HHsearch alignment for GI: 254780834 and conserved domain: COG4643
>COG4643 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=98.32 E-value=4e-05 Score=66.75 Aligned_cols=266 Identities=23% Similarity=0.285 Sum_probs=147.1
Q ss_pred ECCCCCCCCCCEEEECCC--CEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 345888858787981789--746713688887898998988599979999999998188587768203-67778899999
Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSK--GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLI 118 (648)
Q Consensus 42 ~cPfh~ektpsf~v~~~~--~~~~cf~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~gi~~~~~~~~~-~~~~~~~~~~~ 118 (648)
T Consensus 34 ~cpvcg~k~-RFr~dD~kGrGtw~c~y~~-~GDGl~lvs~v~~~~~~eaa~~i~~~i~~~~~~~~a~~~s~a~~~~~~~~ 111 (366)
T COG4643 34 PCPVCGGKD-RFRFDDRKGRGTWFCNYCG-HGDGLPLVSLVRQRTGIEAAWEIKGDIGNDAPESKAMRASIAPAKADRAA 111 (366)
T ss_pred CCCCCCCCC-CCCCCCCCCCCCEEEEEEC-CCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 898557766-3015675677646886404-67885315530577258999987311047613212334221335577788
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCC
Q ss_conf 99999999999973267775789999850688535101244225677410345542059973452320121003465410
Q gi|254780834|r 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198 (648)
Q Consensus 119 ~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~ 198 (648)
T Consensus 112 ~~~~la~~~a~~~----~gts~~a~~~~~g~---------------------p~Lp~~~it~~-------------~~i~ 153 (366)
T COG4643 112 ERAKLAALLAAKS----RGTSGYAYLVSLGH---------------------PYLPAKGITPA-------------AGIG 153 (366)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHCCCCC---------------------CCCCCCCCCCC-------------CCCC
T ss_conf 9999999999863----30235688735896---------------------15424546512-------------3356
Q ss_pred CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf 00016716888970778588850100146553001038767653521011081788886433100002356787089971
Q gi|254780834|r 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 (648)
Q Consensus 199 ~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vE 278 (648)
T Consensus 154 ~~~~~~~slip~~d~~Gel~~lq--~I~~d---------G~Krf~~Ggr~kg~f~p~~g~~~---------~aa~lvi~E 213 (366)
T COG4643 154 GVQLRDGSLIPLRDADGELTGLQ--LIQPD---------GTKRFLKGGRVKGCFIPLGGLAG---------PAARLVIAE 213 (366)
T ss_pred CCCCCCCCEEEEECCCCCEEEEE--EECCC---------CCCEECCCCCCCCCEEECCCCCC---------CCCCEEEEE
T ss_conf 54446663687772788775368--87678---------65000358742340432588754---------343057740
Q ss_pred CHHHHHHHHHCC-CCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCC-----CCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 438899987435-54211343213662678988512-681899617886-----62257778888887775369730675
Q gi|254780834|r 279 GYMDVLSLCQAG-VQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDD-----PGLRAAYKAIDLVLCHLIPGNRVNFV 351 (648)
Q Consensus 279 Gy~Dvi~l~~~G-~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~-----AG~kAa~Ra~e~~l~~l~~g~~v~vv 351 (648)
T Consensus 214 GyATal~i~~~~ga~v~aAi~agNll~VA~al~~~~Pda~iIIaAD~D~~~~nnpG~t~A~eaA~Av------ng~~--~ 285 (366)
T COG4643 214 GYATALSISQATGAPVAAAIDAGNLLAVASALRKKFPDAQIIIAADDDINTANNPGLTKAEEAAQAV------NGTV--A 285 (366)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH------CCEE--E
T ss_conf 2367879998741066544402358999999997689763699745654467880167899998752------7666--3
Q ss_pred ECCCC-CCHHHHHHCCCHHHHHHHH
Q ss_conf 25788-8888997203668899886
Q gi|254780834|r 352 LLSRG-EDPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 352 ~LP~G-~DPDe~ir~~G~eaf~~ll 375 (648)
T Consensus 286 lP~~~~adwpD~~tq~n~la~r~~~ 310 (366)
T COG4643 286 LPPFGPADWPDGFTQFNDLATRCAF 310 (366)
T ss_pred CCCCCCCCCCHHHHHCCHHHHHHHH
T ss_conf 6887887784054332205555332