HHsearch alignment for GI: 254780834 and conserved domain: COG4643

>COG4643 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=98.32  E-value=4e-05  Score=66.75  Aligned_cols=266  Identities=23%  Similarity=0.285  Sum_probs=147.1

Q ss_pred             ECCCCCCCCCCEEEECCC--CEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf             345888858787981789--746713688887898998988599979999999998188587768203-67778899999
Q gi|254780834|r   42 CCPFHDEKTPSFHCNDSK--GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLI  118 (648)
Q Consensus        42 ~cPfh~ektpsf~v~~~~--~~~~cf~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~gi~~~~~~~~~-~~~~~~~~~~~  118 (648)
T Consensus        34 ~cpvcg~k~-RFr~dD~kGrGtw~c~y~~-~GDGl~lvs~v~~~~~~eaa~~i~~~i~~~~~~~~a~~~s~a~~~~~~~~  111 (366)
T COG4643          34 PCPVCGGKD-RFRFDDRKGRGTWFCNYCG-HGDGLPLVSLVRQRTGIEAAWEIKGDIGNDAPESKAMRASIAPAKADRAA  111 (366)
T ss_pred             CCCCCCCCC-CCCCCCCCCCCCEEEEEEC-CCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf             898557766-3015675677646886404-67885315530577258999987311047613212334221335577788


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCC
Q ss_conf             99999999999973267775789999850688535101244225677410345542059973452320121003465410
Q gi|254780834|r  119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS  198 (648)
Q Consensus       119 ~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~  198 (648)
T Consensus       112 ~~~~la~~~a~~~----~gts~~a~~~~~g~---------------------p~Lp~~~it~~-------------~~i~  153 (366)
T COG4643         112 ERAKLAALLAAKS----RGTSGYAYLVSLGH---------------------PYLPAKGITPA-------------AGIG  153 (366)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHCCCCC---------------------CCCCCCCCCCC-------------CCCC
T ss_conf             9999999999863----30235688735896---------------------15424546512-------------3356


Q ss_pred             CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf             00016716888970778588850100146553001038767653521011081788886433100002356787089971
Q gi|254780834|r  199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE  278 (648)
Q Consensus       199 ~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vE  278 (648)
T Consensus       154 ~~~~~~~slip~~d~~Gel~~lq--~I~~d---------G~Krf~~Ggr~kg~f~p~~g~~~---------~aa~lvi~E  213 (366)
T COG4643         154 GVQLRDGSLIPLRDADGELTGLQ--LIQPD---------GTKRFLKGGRVKGCFIPLGGLAG---------PAARLVIAE  213 (366)
T ss_pred             CCCCCCCCEEEEECCCCCEEEEE--EECCC---------CCCEECCCCCCCCCEEECCCCCC---------CCCCEEEEE
T ss_conf             54446663687772788775368--87678---------65000358742340432588754---------343057740


Q ss_pred             CHHHHHHHHHCC-CCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCC-----CCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             438899987435-54211343213662678988512-681899617886-----62257778888887775369730675
Q gi|254780834|r  279 GYMDVLSLCQAG-VQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDD-----PGLRAAYKAIDLVLCHLIPGNRVNFV  351 (648)
Q Consensus       279 Gy~Dvi~l~~~G-~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~-----AG~kAa~Ra~e~~l~~l~~g~~v~vv  351 (648)
T Consensus       214 GyATal~i~~~~ga~v~aAi~agNll~VA~al~~~~Pda~iIIaAD~D~~~~nnpG~t~A~eaA~Av------ng~~--~  285 (366)
T COG4643         214 GYATALSISQATGAPVAAAIDAGNLLAVASALRKKFPDAQIIIAADDDINTANNPGLTKAEEAAQAV------NGTV--A  285 (366)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH------CCEE--E
T ss_conf             2367879998741066544402358999999997689763699745654467880167899998752------7666--3


Q ss_pred             ECCCC-CCHHHHHHCCCHHHHHHHH
Q ss_conf             25788-8888997203668899886
Q gi|254780834|r  352 LLSRG-EDPDSFIRCYGKTAFEKLI  375 (648)
Q Consensus       352 ~LP~G-~DPDe~ir~~G~eaf~~ll  375 (648)
T Consensus       286 lP~~~~adwpD~~tq~n~la~r~~~  310 (366)
T COG4643         286 LPPFGPADWPDGFTQFNDLATRCAF  310 (366)
T ss_pred             CCCCCCCCCCHHHHHCCHHHHHHHH
T ss_conf             6887887784054332205555332