HHsearch alignment for GI: 254780834 and conserved domain: PRK05667
>PRK05667 dnaG DNA primase; Validated.
Probab=100.00 E-value=0 Score=1218.74 Aligned_cols=592 Identities=36% Similarity=0.583 Sum_probs=500.8
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHH
Q ss_conf 98788899999874888887541222101588777775575345888858787981789746713688887898998988
Q gi|254780834|r 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 (648)
Q Consensus 1 m~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~ 80 (648)
T Consensus 2 grIp~e~Ie~i~~~~dIvdvi~~yv~Lkk~G~~-----~~glCPFH~EktPSF~V~~~k~~~~CFgCg~~Gdv~~Flm~~ 76 (600)
T PRK05667 2 GRIPPEFIDELRARVDIVDVIGEYVKLKKAGRN-----YKGLCPFHDEKTPSFTVSPDKQFYHCFGCGAGGDAIKFLMEY 76 (600)
T ss_pred CCCCHHHHHHHHHHCCHHHHHCCCEEEEECCCC-----CEEECCCCCCCCCCCEEECCCCEEEECCCCCCCCHHHHHHHH
T ss_conf 999989999999849999875162289988998-----378796999999994797899979869999695578978976
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCC
Q ss_conf 59997999999999818858776820-36777889999999999999999973267775789999850688535101244
Q gi|254780834|r 81 LGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 (648)
Q Consensus 81 ~~~~f~ea~~~la~~~gi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~l 159 (648)
T Consensus 77 e~lsF~eAv~~LA~~~gi~l~~~~~~~~~~~~~~~~~l~~~~~~a~~~f~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~l 156 (600)
T PRK05667 77 EGLSFVEAVEELADRAGIELPYEDGGSAQEEKSRRQELYEIMELAAKFYQQQLRTPEGAEARQYLYERGLSEETIERFGI 156 (600)
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 29987999999999959975766775134425689999999999999999984896208999999975999999998383
Q ss_pred CCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCC
Q ss_conf 22567741034554205997345232012100346541000016716888970778588850100146553001038767
Q gi|254780834|r 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 (648)
Q Consensus 160 G~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT 239 (648)
T Consensus 157 Gyap~~~~~l~~~l~~~g~~~~~l~~~GL~~~~~~g-~~yDrFr~RimFPI~d~~G~vIgFgGR~l~~~~~pKYlNSpET 235 (600)
T PRK05667 157 GYAPDGWDALLKHLGKKGIEPKLLEEAGLLIKNEDG-RPYDRFRNRIMFPIRDLRGRVIGFGGRVLGKDDEPKYLNSPET 235 (600)
T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHCCEEECCCC-CCCHHHCCCEEEEEECCCCCEEEEECEECCCCCCCCCCCCCCC
T ss_conf 547771789999987369729999982682599999-8751320805676556899876441203488899870179887
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEE
Q ss_conf 65352101108178888643310000235678708997143889998743554211343213662678988512681899
Q gi|254780834|r 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319 (648)
Q Consensus 240 ~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl 319 (648)
T Consensus 236 ~lF~K~~~Lygl~~A~~~i~~~----------~~~ilvEGymDvIal~q~Gi~naVA~lGTAlT~~h~~~L~r~~~~vil 305 (600)
T PRK05667 236 PLFHKGRELYGLDEARKAIAKK----------DRVIVVEGYMDVIALHQAGITNAVASLGTALTEEHLQLLRRYTDEVIL 305 (600)
T ss_pred CCCHHHHHHHHHHHHHHHHHCC----------CCEEEEECCHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 3401016886358999986235----------857998063999999984986775334341639999999736893899
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHH
Q ss_conf 61788662257778888887775369730675257888888997203668899886414992799999998530233145
Q gi|254780834|r 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 (648)
Q Consensus 320 ~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe 399 (648)
T Consensus 306 ~fDgD~AG~~Aa~ra~~~~~~~~~~g~~v~v~~lp~g~DPD~~i~~~G~~~f~~~l~~a~~~~~f~~~~~~~~~~l~~~e 385 (600)
T PRK05667 306 CFDGDRAGRKAALRALELALPLLKDGRQLRFLFLPDGKDPDDLVRKEGKEAFRALLEQAIPLSEFLIRRLIPGKDLDTPE 385 (600)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 96885888999999999878886389779996189998938999875999999999738998999999997148999999
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79999999998854179989999999999999887657767764332001235555554556643333222233445553
Q gi|254780834|r 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 (648)
Q Consensus 400 ~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (648)
T Consensus 386 ~k~~~~~~~~~~i~~i~d~i~r~~y~~~la~~l~i~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 454 (600)
T PRK05667 386 GRAALLERAAPLIAKIPDPTLRDSYRQKLAELLGIFDDAQVEQLVPKLRRQRSRLAPP-----------PSPKKLSPRSP 454 (600)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCCCCCH
T ss_conf 9999999999999968999999999999999859898999999864310246667888-----------77667888987
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_conf 037999999999847788999984430023799889999999999975388999899998851---11289999999998
Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGFGELLKQLDRQ 556 (648)
Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~---~~~l~elL~~L~~~ 556 (648)
T Consensus 455 ~~~aE~~lL~~ll~~p~l~~~~~~~~~~~~~~~~~~~~l~~~i~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~l~~l~-- 531 (600)
T PRK05667 455 KERAERELLALLLQHPELAEEVRELDALEDFKLPGLRLLYELIDAAG-EQPGLTGAQLLELLRDLRDEELAELLERLA-- 531 (600)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHCCCHHHHHHHHHHH--
T ss_conf 78999999999982989999875013423138878999999999987-478998799999998436859999999997--
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6543332025689988999999999999985899999999999999872-412798999999999999999999988
Q gi|254780834|r 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILHEVHIQIHQIE 632 (648)
Q Consensus 557 ~~~~~~~~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~-~~~~d~e~~~~l~~el~elk~~L~~l~ 632 (648)
T Consensus 532 -----~~~----~~~e~~~~~i~d~i~~L~~~-~l~~~~~~L~~k~~~~~~~~~e~~el~~ll~el~~l~~~~~~l~ 598 (600)
T PRK05667 532 -----VED----LPAELAEQELEDALAKLRKA-LLELRLEELLKKERRLGLAEEEKEELLALLQELKALEQELRALE 598 (600)
T ss_pred -----CCC----CCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----276----78740899999999999983-79999999999984538985539999999999999999999863