HHsearch alignment for GI: 254780834 and conserved domain: TIGR00334
>TIGR00334 primaseG_like primase homolog; InterPro: IPR004466 This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases..
Probab=90.81 E-value=0.52 Score=28.92 Aligned_cols=65 Identities=28% Similarity=0.338 Sum_probs=56.5
Q ss_pred CEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHH
Q ss_conf 70899714388999874355421134321366267898851268--189961788662257778888
Q gi|254780834|r 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAID 336 (648)
Q Consensus 272 ~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e 336 (648)
T Consensus 3 ~~~~~~~g~~d~~~~~~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~dpd~~g~~~~~~~~~ 69 (176)
T TIGR00334 3 KGVIVCEGKDDLARLKELFDVDVIETNGSALKDETINLLKKALKKKGVILLLDPDKPGEKIRKKLEE 69 (176)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
T ss_conf 7426640761467777764001100354023578899999877536736875687322689999998