HHsearch alignment for GI: 254780834 and conserved domain: TIGR02760
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI; InterPro: IPR014129 This entry represents TraI, which is a component of the relaxosome complex. In the process of conjugative plasmid transfer the relaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein ..
Probab=98.88 E-value=2.3e-07 Score=87.43 Aligned_cols=303 Identities=19% Similarity=0.293 Sum_probs=197.8
Q ss_pred CCCCCCCCEEEE---CCCCEEEECCCCCCCCHHHHHHHHCCCC-HHHHHHHHHHHHCCCCC---CCCCCHHH-HHHHHHH
Q ss_conf 888858787981---7897467136888878989989885999-79999999998188587---76820367-7788999
Q gi|254780834|r 45 FHDEKTPSFHCN---DSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLP---VVDPKIEK-KEKIQTD 116 (648)
Q Consensus 45 fh~ektpsf~v~---~~~~~~~cf~c~~~gd~~~f~~~~~~~~-f~ea~~~la~~~gi~~~---~~~~~~~~-~~~~~~~ 116 (648)
T Consensus 1759 fg~~KG-~Lkv~L~g~yrG~w~~f~tG~~G~li~li~~~~~LSG~KEal~~A~~l~~~p~~~~~~i~~~a~~~~~~~~~k 1837 (2193)
T TIGR02760 1759 FGTAKG-SLKVSLTGKYRGLWKDFETGEKGTLIDLIEAKKGLSGFKEALNKAASLLGEPEHYQLSINKKAPQLLNTEPEK 1837 (2193)
T ss_pred ECCCCC-CEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 006752-2588750453422242467888768888751058877799999999862787412544142341234344566
Q ss_pred HHHHHH-----HHHHHHHHHHCCCCCHHHHHHH-HHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCE
Q ss_conf 999999-----9999999973267775789999-8506885351012442256774103455420599734523201210
Q gi|254780834|r 117 LIRLIE-----VATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 (648)
Q Consensus 117 ~~~~~~-----~~~~~~~~~l~~~~~~~a~~yl-~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~ 190 (648)
T Consensus 1838 ~~~~e~r~kvi~A~~~f~~s~-~~~gTlAe~YL~~~~G~~--~~D~~~~Rf~P~vy~W--knCneq----------G~~~ 1902 (2193)
T TIGR02760 1838 LAQLEKRNKVILAKKLFQESQ-ELKGTLAEKYLKQHRGLA--SIDNDDIRFHPSVYSW--KNCNEQ----------GKLS 1902 (2193)
T ss_pred HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCC--CCCCCC----------CCCC
T ss_conf 765544456788899863480-167889999998617863--3456451132576751--010112----------5555
Q ss_pred ECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCC--CCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 034654100001671688897077858885010014655--300103876765352101108178888643310000235
Q gi|254780834|r 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 (648)
Q Consensus 191 ~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~--~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~ 268 (648)
T Consensus 1903 ~-~~~~~PA------li~~~~~~~g~~~gi~~~yL~~~~a~k~~~~~~~krv~G~~s~~~~~ln~g~~g----------- 1964 (2193)
T TIGR02760 1903 D-KKKKHPA------LIAAAKDEKGEIKGIQITYLDKDDANKDKDMDSNKRVLGSKSGQFVVLNKGRQG----------- 1964 (2193)
T ss_pred C-CCCCCCE------EEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCEEECCCCCCH-----------
T ss_conf 6-4345530------010111889854116851368655567663656874112013624430477640-----------
Q ss_pred CCCCEEEEECCHHHHHHHHHCCCCC--CHHHHHC-------CCCHHH---------HHHHH--HCCCEEEEEECCCCCCH
Q ss_conf 6787089971438899987435542--1134321-------366267---------89885--12681899617886622
Q gi|254780834|r 269 NSSSFIILVEGYMDVLSLCQAGVQN--VVSSLGT-------ALTEYQ---------LRLLW--KLSPRIVLCFDGDDPGL 328 (648)
Q Consensus 269 ~~~~~~i~vEGy~Dvi~l~~~G~~n--~va~~Gt-------alt~~~---------~~~l~--r~~~~vvl~fDgD~AG~ 328 (648)
T Consensus 1965 ---~~~~~a~G~E~g~~I~~~n~~~~~~~~v~~~~~PWnPvaitGGrvWGdiPd~n~~~i~~~~~~~~v~I~l~n~~~~~ 2041 (2193)
T TIGR02760 1965 ---DISYLAEGIETGLSIAEANPKATVVIAVVGKNRPWNPVAITGGRVWGDIPDNNVSPIAPKDIPKNVVIVLDNDGEEA 2041 (2193)
T ss_pred ---HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCHHH
T ss_conf ---07888886899999975489960699980488764664640660233577334788888887306999724773689
Q ss_pred -----HHHHHHH-HHHHHHHHCCCCEEEEECCC------CCCHHHHHHCCCHHHHHHHHHH----CCCHHHHH
Q ss_conf -----5777888-88877753697306752578------8888899720366889988641----49927999
Q gi|254780834|r 329 -----RAAYKAI-DLVLCHLIPGNRVNFVLLSR------GEDPDSFIRCYGKTAFEKLIVE----SLPLVDML 385 (648)
Q Consensus 329 -----kAa~Ra~-e~~l~~l~~g~~v~vv~LP~------G~DPDe~ir~~G~eaf~~ll~~----A~~l~dFl 385 (648)
T Consensus 2042 yky~~~e~~~~i~ki~~kl~~d~~~~~i~~-P~GlqGK~~TD~Nd~~l~~~~~~~~k~~~~kDiG~i~~~~~k 2113 (2193)
T TIGR02760 2042 YKYVKRESQRAIEKIIKKLKEDNISASIVI-PDGLQGKEKTDLNDVLLKKGEEELKKQLKRKDIGAISSIEDK 2113 (2193)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 999853534329999999616898089981-378676111660001003863799999745422012010036