HHsearch alignment for GI: 254780834 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.28 E-value=0.032 Score=40.10 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 78588850100146553001038767653521011081788886433100002356787089971438899987
Q gi|254780834|r 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 (648)
Q Consensus 214 ~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~ 287 (648)
T Consensus 193 ~g~LiIiaARP---s---------------mGKTafalnia~n~A~~---------~g~~Vl~fSLEMs~eql~ 239 (421)
T TIGR03600 193 KGDLIVIGARP---S---------------MGKTTLALNIAENVALR---------EGKPVLFFSLEMSAEQLG 239 (421)
T ss_pred CCCEEEEEEEC---C---------------CCHHHHHHHHHHHHHHH---------CCCEEEEEECCCCHHHHH
T ss_conf 88689998546---7---------------87459999999999986---------698389992579999999