HHsearch alignment for GI: 254780834 and conserved domain: pfam00772
>pfam00772 DnaB DnaB-like helicase N terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This N-terminal domain is required both for interaction with other proteins in the primosome and for DnaB helicase activity.
Probab=95.95 E-value=0.069 Score=36.97 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 79999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648)
Q Consensus 482 ~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648)
T Consensus 7 eaE~~lLg~lL~~~~~~~~i~~~l~~edF~~~~h~~If~~i~~l~~~~~~iD~~tl~~~l~~~~~ 71 (103)
T pfam00772 7 EAEQAVLGALLLDPEAIDEVADILKPEDFYDPAHRLIFEAILELYDKGKPIDPVTVAEELERKGK 71 (103)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 99999999999697489999972799984959999999999999845699689999999976798