HHsearch alignment for GI: 254780834 and conserved domain: pfam01807

>pfam01807 zf-CHC2 CHC2 zinc finger. This domain is principally involved in DNA binding in DNA primases.

Probab=99.96  E-value=2.5e-28  Score=280.14  Aligned_cols=96  Identities=46%  Similarity=0.823  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf             78889999987488888754122210158877777557534588885878798178974671368888789899898859
Q gi|254780834|r    3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG   82 (648)
Q Consensus         3 i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~   82 (648)
T Consensus         1 I~~~~I~~ik~~~~i~~vv~~~v~L~~~G~~-----~~~~CPFH~ek~PS~~V~~~k~~f~CF~Cg~~Gd~i~fv~~~e~   75 (98)
T pfam01807         1 IPEESIDDLKNRIDIVDIIGQYVKLKKKGRD-----YKGLCPFHDEKTPSFSVSPDKQFYHCFGCGAGGDAISFLMKIDK   75 (98)
T ss_pred             CCHHHHHHHHHHCCHHHHHHHCCEEEECCCC-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf             9889999999859999998622516888986-----58879988999982799769996997789999767878998859


Q ss_pred             CCHHHHHHHHHHHHCCCCCCC
Q ss_conf             997999999999818858776
Q gi|254780834|r   83 CSFIESVQRLAAIAGVPLPVV  103 (648)
Q Consensus        83 ~~f~ea~~~la~~~gi~~~~~  103 (648)
T Consensus        76 ~~f~eAv~~LA~~~gi~l~~~   96 (98)
T pfam01807        76 LSFVEAVKKLADRAGIDLPYE   96 (98)
T ss_pred             CCHHHHHHHHHHHHCCCCCCC
T ss_conf             799999999999969988876