HHsearch alignment for GI: 254780834 and conserved domain: pfam08275
>pfam08275 Toprim_N DNA primase catalytic core, N-terminal domain.
Probab=99.97 E-value=1.5e-31 Score=309.83 Aligned_cols=128 Identities=49% Similarity=0.854 Sum_probs=123.1
Q ss_pred HHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEE
Q ss_conf 99997326777578999985068853510124422567741034554205997345232012100346541000016716
Q gi|254780834|r 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206 (648)
Q Consensus 127 ~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri 206 (648)
T Consensus 1 fy~~~L~~~~~~~a~~YL~~Rgi~~~~i~~F~iGyap~~~~~L~~~l~~~~~~~~~l~~~Gl~~~~~~~~-~~D~F~~Ri 79 (128)
T pfam08275 1 FYHELLKTKEGAAARDYLKSRGLSPETIKRFGLGYAPDGWDNLLNHLEKKGFDLELLLEAGLLVKREDGG-YYDRFRNRI 79 (128)
T ss_pred CHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCC-EEEEECCEE
T ss_conf 9378857975589999999859999999984878787606899998753289899998689869879998-855441248
Q ss_pred EEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHH
Q ss_conf 8889707785888501001465530010387676535210110817888
Q gi|254780834|r 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 (648)
Q Consensus 207 ~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~ 255 (648)
T Consensus 80 ~fPI~d~~g~vigFgGR~l~~~~~~KYlNS~et~iF~K~~~Lygl~~Ak 128 (128)
T pfam08275 80 MFPIRDESGRVVGFGGRALDDEEPPKYLNSPETPLFKKGKVLYGLDEAK 128 (128)
T ss_pred EEEEECCCCCEEEEEEEECCCCCCCCEECCCCCCCEECCCCEECCCCCC
T ss_conf 9988779998999871577999998704799984685640103831049