HHsearch alignment for GI: 254780834 and conserved domain: pfam08275

>pfam08275 Toprim_N DNA primase catalytic core, N-terminal domain.
Probab=99.97  E-value=1.5e-31  Score=309.83  Aligned_cols=128  Identities=49%  Similarity=0.854  Sum_probs=123.1

Q ss_pred             HHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEE
Q ss_conf             99997326777578999985068853510124422567741034554205997345232012100346541000016716
Q gi|254780834|r  127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL  206 (648)
Q Consensus       127 ~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri  206 (648)
T Consensus         1 fy~~~L~~~~~~~a~~YL~~Rgi~~~~i~~F~iGyap~~~~~L~~~l~~~~~~~~~l~~~Gl~~~~~~~~-~~D~F~~Ri   79 (128)
T pfam08275         1 FYHELLKTKEGAAARDYLKSRGLSPETIKRFGLGYAPDGWDNLLNHLEKKGFDLELLLEAGLLVKREDGG-YYDRFRNRI   79 (128)
T ss_pred             CHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHCCCEEECCCCC-EEEEECCEE
T ss_conf             9378857975589999999859999999984878787606899998753289899998689869879998-855441248


Q ss_pred             EEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHH
Q ss_conf             8889707785888501001465530010387676535210110817888
Q gi|254780834|r  207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL  255 (648)
Q Consensus       207 ~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~  255 (648)
T Consensus        80 ~fPI~d~~g~vigFgGR~l~~~~~~KYlNS~et~iF~K~~~Lygl~~Ak  128 (128)
T pfam08275        80 MFPIRDESGRVVGFGGRALDDEEPPKYLNSPETPLFKKGKVLYGLDEAK  128 (128)
T ss_pred             EEEEECCCCCEEEEEEEECCCCCCCCEECCCCCCCEECCCCEECCCCCC
T ss_conf             9988779998999871577999998704799984685640103831049