HHsearch alignment for GI: 254780834 and conserved domain: pfam10410
>pfam10410 DnaB_bind DnaB-helicase binding domain of primase. This domain is the C-terminal region three-helical domain of primase. Primases synthesize short RNA strands on single-stranded DNA templates, thereby generating the hybrid duplexes required for the initiation of synthesis by DNA polymerases. Primases are recruited to single-stranded DNA by helicases, and this domain is the region of the primase which binds DnaB-helicase. It is associated with the Toprim domain (pfam01751) which is the central catalytic core.
Probab=97.83 E-value=3.9e-05 Score=66.88 Aligned_cols=56 Identities=30% Similarity=0.361 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 27999999985302331457999999999885417998999999999999988765
Q gi|254780834|r 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 (648)
Q Consensus 381 l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~ 436 (648)
T Consensus 1 l~~f~~~~l~~~~dl~~~egk~~~~~~~~pli~~i~~~~~r~~y~~~la~~~gi~~ 56 (59)
T pfam10410 1 LSEFLFRRLLEGYDLDTPEGRAALLREALPLIAKIPDPVLRELYLQELAELLGISE 56 (59)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 92889999873589999889999999970787559838899999999999878284