HHsearch alignment for GI: 254780834 and conserved domain: smart00766
>smart00766 DnaG_DnaB_bind DNA primase DnaG DnaB-binding. DnaG_DnaB_bind defines a domain of primase required for functional interaction with DnaB that attracts primase to the replication fork. DnaG_DnaB_bind is responsible for the interaction between DnaG and DnaB.
Probab=96.90 E-value=0.033 Score=39.91 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=77.8
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999847788999984430023799889999999999975388999899998851112899999999986543332
Q gi|254780834|r 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 (648)
Q Consensus 484 E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~~~~~~~ 563 (648)
T Consensus 1 ~R~~I~llLq~P~la~~v~~~~~~~~~~~~~~~-ll~~L~~~~~~~p~~~t~~Lle~~rd~~~~~~L~~La~~~~----- 74 (125)
T smart00766 1 MRELIRLLLQNPELASLVPDLLTLEDFTHPGLA-LLAELLATCRGNPGLTTGQLLEHWRDTPYEELLSELAVWDH----- 74 (125)
T ss_pred CHHHHHHHHHCHHHHHHCCCCHHHHHCCCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC-----
T ss_conf 989999998692988658881345545681079-99999999854999879999989549808999999985574-----
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0256899889999999999999858999999999999998
Q gi|254780834|r 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 (648)
Q Consensus 564 ~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~ 603 (648)
T Consensus 75 ----~~~~~~~~~ef~d~l~~L~~~-~~~~ri~~L~~k~~ 109 (125)
T smart00766 75 ----LIDEENLEEEFLDTLARLRKQ-LLERRIEELIAKLR 109 (125)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_conf ----578067999999999999999-99999999999873