HHsearch alignment of GI: 254780834 and MMDB domain: 1d0q_A_1-22_70-103
>1d0q_A (A:1-22,A:70-103) DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus}
Probab=97.86 E-value=4.4e-05 Score=65.80 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648)
+||.+.||+||..+|||+|+ |+|+|++|
T Consensus 4 ~ip~e~i~~irr~~div~v~----------------------------------------------------fsflmdie 31 (56)
T 1d0q_A 4 RIPEETIEAIRRGVDIVDVA----------------------------------------------------FTFLMDIE 31 (56)
T ss_dssp TSCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_conf 88989999999859999999----------------------------------------------------99999996
Q ss_pred CCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999799999999981885877
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPV 102 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~ 102 (648)
|++|.||++.||.++||++..
T Consensus 32 gi~fiea~krla~ka~vdls~ 52 (56)
T 1d0q_A 32 GIPFVEAAKRLAAKAGVDLSV 52 (56)
T ss_dssp TCCHHHHHHHHHHHHTCCCGG
T ss_pred CCCHHHHHHHHHHHHCCCCCC
T ss_conf 869999999999996998777