HHsearch alignment of GI: 254780834 and MMDB domain: 1nui_A_138-255
>1nui_A (A:138-255) DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
Probab=99.57 E-value=8.5e-15 Score=155.12 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=95.4
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCC---CEEE
Q ss_conf 1011081788886433100002356787089971438899987435542113---432136626789885126---8189
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLS---PRIV 318 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~---~~vv 318 (648)
|+.|||++.+++. ++++||||++|++|++|+|++++|+ ++|++++..|+..+.++. .+|+
T Consensus 1 S~~l~~~~~~~~~--------------~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ii 66 (118)
T 1nui_A 1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII 66 (118)
T ss_dssp TTCCTTGGGCCCB--------------SCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEE
T ss_pred CCCCEEEEECCCC--------------CEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4632022104687--------------66999788136999999842688654367630121467788888743677599
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 961788662257778888887775369730675257888888997203668899886
Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll 375 (648)
+|||+|.||++++.+..+.+ ...-..+.+|+|+||+|+++++|.++|+++|
T Consensus 67 i~~DnD~aG~~~~~~~~~~l------~~~~~~~~~p~~kD~nd~l~~~g~~~~~~~i 117 (118)
T 1nui_A 67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQV 117 (118)
T ss_dssp EECCSSHHHHHHHHHHHHHS------CTTTEEECCCSSSSHHHHHTTTTHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf 97789989999999999875------7787999508987989998819999999975