HHsearch alignment of GI: 254780834 and MMDB domain: 1nui_A_138-255

>1nui_A (A:138-255) DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
Probab=99.57  E-value=8.5e-15  Score=155.12  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCC---CEEE
Q ss_conf             1011081788886433100002356787089971438899987435542113---432136626789885126---8189
Q gi|254780834|r  245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLS---PRIV  318 (648)
Q Consensus       245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~---~~vv  318 (648)
                      |+.|||++.+++.              ++++||||++|++|++|+|++++|+   ++|++++..|+..+.++.   .+|+
T Consensus         1 S~~l~~~~~~~~~--------------~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ii   66 (118)
T 1nui_A            1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII   66 (118)
T ss_dssp             TTCCTTGGGCCCB--------------SCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEE
T ss_pred             CCCCEEEEECCCC--------------CEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf             4632022104687--------------66999788136999999842688654367630121467788888743677599


Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf             961788662257778888887775369730675257888888997203668899886
Q gi|254780834|r  319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI  375 (648)
Q Consensus       319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll  375 (648)
                      +|||+|.||++++.+..+.+      ...-..+.+|+|+||+|+++++|.++|+++|
T Consensus        67 i~~DnD~aG~~~~~~~~~~l------~~~~~~~~~p~~kD~nd~l~~~g~~~~~~~i  117 (118)
T 1nui_A           67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQV  117 (118)
T ss_dssp             EECCSSHHHHHHHHHHHHHS------CTTTEEECCCSSSSHHHHHTTTTHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf             97789989999999999875------7787999508987989998819999999975