HHsearch alignment of GI: 254780834 and MMDB domain: 2au3_A_20-66
>2au3_A (A:20-66) DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=99.55 E-value=3.5e-15 Score=158.62 Aligned_cols=47 Identities=43% Similarity=0.940 Sum_probs=46.0
Q ss_pred HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
Q ss_conf 5412221015887777755753458888587879817897467136888878
Q gi|254780834|r 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 (648)
Q Consensus 21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd 72 (648)
||+||+|+|+|+| ||++||||+||||||+|+|+||+|||||||+|||
T Consensus 1 i~~yv~l~~~G~~-----~~~~CPfH~ek~PSf~v~~~k~~~~CFgCg~gGd 47 (47)
T 2au3_A 1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47 (47)
T ss_dssp HHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred HHHCEEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
T ss_conf 8626048976974-----7987989999899559988999899658998977