Query gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 648
No_of_seqs 198 out of 1905
Neff 7.9
Searched_HMMs 33803
Date Wed Jun 1 19:09:36 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780834.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1dd9_A DNA primase, DNAG; top 100.0 3.5E-30 1E-34 296.6 9.0 145 95-243 1-145 (145)
2 >2au3_A DNA primase; zinc ribb 99.9 8.6E-28 2.5E-32 274.6 9.2 127 110-241 3-129 (129)
3 >1dd9_A DNA primase, DNAG; top 99.8 8.7E-20 2.6E-24 201.0 11.2 139 244-392 1-139 (140)
4 >2au3_A DNA primase; zinc ribb 99.8 1.1E-18 3.4E-23 190.7 11.1 124 242-378 1-124 (125)
5 >2fcj_A Small toprim domain pr 99.8 7.2E-19 2.1E-23 192.6 5.2 104 270-380 3-118 (119)
6 >1t6t_1 Putative protein; stru 99.7 6.6E-18 2E-22 183.7 3.6 114 245-381 2-115 (118)
7 >1q57_A DNA primase/helicase; 99.6 3.1E-15 9.1E-20 159.2 7.2 117 245-381 1-123 (129)
8 >1nui_A DNA primase/helicase; 99.6 8.5E-15 2.5E-19 155.1 8.0 111 245-375 1-117 (118)
9 >1d0q_A DNA primase; zinc-bind 99.6 2.6E-15 7.8E-20 159.8 4.6 47 21-72 1-47 (47)
10 >2au3_A DNA primase; zinc ribb 99.5 3.5E-15 1E-19 158.6 4.7 47 21-72 1-47 (47)
11 >1d0q_A DNA primase; zinc-bind 97.9 4.4E-05 1.3E-09 65.8 6.6 49 2-102 4-52 (56)
12 >2r5u_A Replicative DNA helica 97.6 0.005 1.5E-07 46.9 14.1 68 479-546 29-96 (200)
13 >2r6a_A DNAB helicase, replica 97.4 0.0089 2.6E-07 44.6 12.9 66 480-545 13-78 (155)
14 >2r6a_C DNAG primase, helicase 97.1 0.0072 2.1E-07 45.4 9.9 90 478-576 4-93 (100)
15 >1b79_A DNAB helicase; hexamer 96.9 0.03 9E-07 39.7 11.3 69 480-548 20-88 (119)
16 >3gxv_A Replicative DNA helica 96.8 0.036 1.1E-06 39.0 11.4 70 481-550 11-80 (123)
17 >2q6t_A DNAB replication FORK 96.7 0.088 2.6E-06 35.4 17.6 66 480-545 9-75 (152)
18 >3bgw_A DNAB-like replicative 96.0 0.19 5.6E-06 32.3 11.6 63 481-545 15-77 (154)
19 >1t3w_A DNA primase; DNAG, DNA 91.4 1.2 3.6E-05 24.9 8.1 73 484-557 18-90 (109)
20 >2au3_A DNA primase; zinc ribb 90.9 0.3 8.9E-06 30.5 3.9 28 73-100 20-47 (48)
21 >1xmx_A Hypothetical protein V 82.5 3.4 1E-04 20.9 6.8 73 289-366 1-75 (141)
22 >2gai_A DNA topoisomerase I; z 78.9 2.9 8.5E-05 21.5 4.1 84 272-363 6-93 (100)
23 >1ffy_A Isoleucyl-tRNA synthet 78.7 1.5 4.5E-05 24.1 2.6 79 271-387 47-125 (272)
24 >3k9f_C DNA topoisomerase 4 su 78.4 4.4 0.00013 19.8 5.7 67 291-363 97-170 (187)
25 >1nui_A DNA primase/helicase; 76.6 3 8.7E-05 21.4 3.6 50 170-226 13-62 (72)
26 >1q57_A DNA primase/helicase; 75.6 3.5 0.0001 20.7 3.8 50 170-226 15-64 (74)
27 >2kao_A Methionine-R-sulfoxide 72.9 2.6 7.6E-05 21.9 2.5 25 42-69 3-28 (69)
28 >1xri_A AT1G05000; structural 70.2 3 8.9E-05 21.3 2.4 57 40-96 60-132 (151)
29 >3gjx_A Exportin-1; transport, 66.7 7.6 0.00022 17.6 7.2 80 357-436 19-110 (211)
30 >1d3y_A DNA topoisomerase VI A 64.7 6.3 0.00019 18.4 3.1 95 270-366 46-152 (226)
31 >1vdd_A Recombination protein 64.6 8.2 0.00024 17.3 6.2 84 269-357 11-106 (109)
32 >3f41_A Phytase; tandem repeat 63.2 8.6 0.00026 17.1 5.3 90 6-101 52-160 (212)
33 >1yn9_A BVP, polynucleotide 5' 62.7 4.6 0.00014 19.6 2.1 24 314-337 112-135 (169)
34 >3iac_A Glucuronate isomerase; 62.2 9 0.00027 17.0 4.3 24 77-100 73-96 (117)
35 >2vbc_A Dengue 4 NS3 FULL-leng 61.8 5.3 0.00016 19.1 2.3 19 208-226 50-68 (88)
36 >2img_A Dual specificity prote 60.6 5.9 0.00017 18.7 2.3 60 38-97 57-131 (151)
37 >2wgp_A Dual specificity prote 60.4 6 0.00018 18.6 2.3 36 61-96 107-144 (147)
38 >2hcm_A Dual specificity prote 60.1 7.6 0.00022 17.6 2.8 73 22-99 46-133 (164)
39 >2zbk_A Type II DNA topoisomer 60.0 6.4 0.00019 18.3 2.4 98 271-368 49-155 (236)
40 >2uzz_A N-methyl-L-tryptophan 58.8 5.9 0.00018 18.6 2.1 20 142-161 19-38 (154)
41 >1dsq_A Nucleic acid binding p 58.5 2.6 7.8E-05 21.9 0.2 11 63-73 4-14 (26)
42 >2e0t_A Dual specificity phosp 57.7 6.4 0.00019 18.3 2.1 36 61-96 89-126 (128)
43 >1svp_A Sindbis virus capsid p 56.9 7.3 0.00022 17.8 2.3 23 206-228 9-35 (72)
44 >1mw9_X DNA topoisomerase I; d 56.9 11 0.00032 16.3 5.1 85 272-364 3-93 (100)
45 >2fp7_B Polyprotein; flaviviru 55.7 7.1 0.00021 17.9 2.1 17 209-225 123-139 (172)
46 >2q01_A Uronate isomerase; str 55.1 11 0.00034 16.0 3.5 23 78-100 71-93 (114)
47 >1b3u_A Protein (protein phosp 54.8 11 0.00034 16.0 5.8 80 355-434 11-92 (111)
48 >1twf_J DNA-directed RNA polym 54.6 12 0.00034 16.0 3.2 30 63-92 6-39 (70)
49 >2i6j_A Ssoptp, sulfolobus sol 52.8 7.2 0.00021 17.8 1.7 40 61-100 93-134 (161)
50 >2g6z_A Dual specificity prote 51.6 13 0.00037 15.6 3.5 63 38-100 51-128 (211)
51 >2r4f_A 3-hydroxy-3-methylglut 51.5 13 0.00037 15.6 3.2 47 314-360 53-103 (105)
52 >2qx5_A Nucleoporin NIC96; mRN 51.2 13 0.00038 15.6 3.5 13 485-497 68-80 (207)
53 >2wv9_A Flavivirin protease NS 51.1 9.9 0.00029 16.6 2.2 17 146-164 81-97 (231)
54 >1s1i_9 L37A, YL35, 60S riboso 51.1 9.6 0.00029 16.7 2.1 26 41-69 36-61 (91)
55 >1ile_A Ilers, isoleucyl-tRNA 50.6 13 0.00039 15.5 2.8 70 271-379 37-106 (305)
56 >2ggv_B NS3, non-structural pr 50.5 10 0.0003 16.4 2.2 17 209-225 137-153 (185)
57 >2pq5_A Dual specificity prote 50.5 8.2 0.00024 17.3 1.7 38 62-99 136-175 (205)
58 >3cc2_Z 50S ribosomal protein 50.3 9.6 0.00029 16.7 2.0 25 41-69 61-86 (116)
59 >2hxp_A Dual specificity prote 50.0 11 0.00033 16.1 2.3 40 61-100 89-131 (155)
60 >3cxk_A Methionine-R-sulfoxide 49.5 12 0.00035 15.8 2.4 14 147-160 59-72 (164)
61 >1b3u_A Protein (protein phosp 49.4 14 0.0004 15.3 3.2 18 358-375 24-41 (127)
62 >3e90_B NS3 protease; trypsin- 49.3 11 0.00031 16.3 2.1 17 209-225 142-158 (198)
63 >1vh4_A SUFD protein; structur 48.4 10 0.00031 16.4 1.9 82 347-436 342-424 (435)
64 >2waq_N DNA-directed RNA polym 48.0 14 0.00042 15.2 3.0 31 63-93 6-39 (66)
65 >1vq8_Z 50S ribosomal protein 48.0 11 0.00033 16.1 2.0 25 41-69 28-53 (83)
66 >3f81_A Dual specificity prote 47.0 15 0.00043 15.0 2.7 61 40-100 83-160 (183)
67 >1zbr_A AAQ65385, conserved hy 46.5 15 0.00044 15.0 3.0 53 303-355 1-58 (59)
68 >3hcj_A MSRB, peptide methioni 46.4 7.4 0.00022 17.7 0.9 14 56-69 7-20 (69)
69 >2k8d_A Peptide methionine sul 45.3 8.6 0.00026 17.1 1.1 14 56-69 29-42 (63)
70 >1m1j_A Fibrinogen alpha subun 44.9 15 0.00046 14.8 5.2 14 619-632 32-45 (373)
71 >2zkr_z 60S ribosomal protein 44.8 16 0.00046 14.8 2.6 25 42-69 38-62 (71)
72 >2fom_B Polyprotein; flaviviru 44.6 13 0.00039 15.5 2.0 16 209-224 138-153 (185)
73 >3ljn_A Hypothetical protein; 43.9 6.4 0.00019 18.3 0.3 21 42-66 3-23 (93)
74 >2aja_A Ankyrin repeat family 43.4 11 0.00032 16.2 1.4 58 242-315 50-107 (156)
75 >3iar_A Adenosine deaminase; p 42.9 11 0.00032 16.3 1.3 66 79-153 14-79 (188)
76 >1ses_A Seryl-tRNA synthetase; 42.0 17 0.0005 14.4 8.8 52 584-639 16-67 (83)
77 >1b3u_A Protein (protein phosp 41.4 15 0.00043 15.0 1.8 66 357-422 20-86 (117)
78 >1wii_A Hypothetical UPF0222 p 41.0 17 0.00051 14.3 2.6 30 42-71 25-57 (85)
79 >2esb_A Dual specificity prote 40.7 18 0.00052 14.3 2.7 35 62-96 102-138 (188)
80 >3emu_A Leucine rich repeat an 40.6 18 0.00052 14.3 2.7 60 38-97 55-129 (161)
81 >2oud_A Dual specificity prote 40.3 18 0.00053 14.2 2.3 40 61-100 91-133 (177)
82 >3hvm_A Agmatine deiminase; hy 40.2 18 0.00053 14.2 3.0 53 303-355 1-58 (67)
83 >3e7h_A DNA-directed RNA polym 40.2 4.8 0.00014 19.5 -0.8 53 200-260 12-72 (81)
84 >1nc8_A Nucleocapsid protein; 39.7 11 0.00032 16.2 1.0 16 58-73 3-18 (29)
85 >1a12_A RCC1, regulator of chr 39.7 18 0.00052 14.3 2.0 11 211-221 74-84 (188)
86 >2r0b_A Serine/threonine/tyros 39.7 18 0.00054 14.2 2.9 37 61-97 94-132 (154)
87 >3e0m_A Peptide methionine sul 39.6 17 0.00051 14.4 2.0 15 147-161 42-56 (160)
88 >2dq0_A Seryl-tRNA synthetase; 39.6 18 0.00054 14.1 9.2 61 574-636 33-93 (113)
89 >1wrm_A Dual specificity phosp 38.7 19 0.00055 14.0 2.9 44 57-100 82-128 (165)
90 >3cqy_A Anhydro-N-acetylmurami 38.4 19 0.00056 14.0 2.0 52 245-322 99-153 (180)
91 >2k5e_A Uncharacterized protei 37.9 17 0.00049 14.5 1.7 34 152-185 23-59 (73)
92 >1q77_A Hypothetical protein A 37.8 19 0.00057 13.9 4.1 39 312-353 2-40 (138)
93 >1nui_A DNA primase/helicase; 37.5 19 0.00057 13.9 4.0 29 40-70 14-42 (65)
94 >3i1a_A Spectinomycin phosphot 37.5 15 0.00045 14.8 1.4 16 285-300 68-83 (103)
95 >2dq3_A Seryl-tRNA synthetase; 37.4 19 0.00057 13.9 5.6 51 586-638 44-94 (112)
96 >1z0j_B FYVE-finger-containing 37.3 19 0.00058 13.9 6.8 45 589-633 12-56 (59)
97 >2k53_A A3DK08 protein; NESG, 37.1 20 0.00058 13.8 1.9 25 161-185 33-57 (76)
98 >3bfv_A CAPA1, CAPB2, membrane 36.9 20 0.00058 13.8 5.2 78 282-363 183-260 (271)
99 >3hcg_A Peptide methionine sul 36.8 16 0.00047 14.7 1.4 14 147-160 29-42 (146)
100 >1wle_A Seryl-tRNA synthetase; 36.7 20 0.00059 13.8 11.1 69 571-639 31-105 (121)
101 >3jyw_9 60S ribosomal protein 36.7 15 0.00045 14.8 1.3 26 41-69 27-52 (72)
102 >1b3u_A Protein (protein phosp 36.4 20 0.00059 13.8 5.5 75 357-431 18-94 (155)
103 >1ffk_W Ribosomal protein L37A 36.3 19 0.00055 14.0 1.7 26 41-69 28-53 (61)
104 >3fmc_A Putative succinylgluta 35.9 17 0.0005 14.4 1.4 15 51-65 60-74 (76)
105 >1jmv_A USPA, universal stress 35.2 21 0.00061 13.6 4.8 36 314-352 2-37 (141)
106 >2f46_A Hypothetical protein; 35.2 21 0.00062 13.6 2.1 24 71-94 116-139 (156)
107 >3can_A Pyruvate-formate lyase 34.9 21 0.00062 13.6 6.8 77 282-362 23-112 (182)
108 >3f62_A Interleukin 18 binding 34.7 16 0.00046 14.7 1.1 23 48-70 6-28 (109)
109 >2iye_A Copper-transporting AT 34.4 21 0.00063 13.5 4.4 121 238-381 29-157 (164)
110 >1fpz_A Cyclin-dependent kinas 34.1 22 0.00064 13.5 2.1 25 314-338 132-156 (212)
111 >3kb9_A EPI-isozizaene synthas 33.4 22 0.00065 13.4 4.5 12 510-521 36-47 (177)
112 >2etv_A Iron(III) ABC transpor 33.4 20 0.0006 13.7 1.5 39 285-326 27-68 (171)
113 >1juh_A Quercetin 2,3-dioxygen 33.4 15 0.00044 14.9 0.8 10 228-237 22-31 (152)
114 >1pj3_A NAD-dependent malic en 33.0 22 0.00066 13.3 2.5 123 144-324 18-143 (305)
115 >1taf_B TFIID TBP associated f 32.9 22 0.00066 13.3 5.3 49 85-134 8-57 (70)
116 >2nt2_A Protein phosphatase sl 32.8 22 0.00066 13.3 2.3 44 57-100 80-127 (145)
117 >3f6q_B LIM and senescent cell 32.8 17 0.00051 14.4 1.0 15 54-68 27-43 (45)
118 >3cxj_A Uncharacterized protei 32.5 23 0.00067 13.3 3.8 55 295-363 54-108 (165)
119 >1ef4_A Subunit N, DNA-directe 32.3 23 0.00067 13.2 2.7 31 63-93 5-38 (55)
120 >3bk2_A RNAse J, metal depende 32.2 23 0.00068 13.2 2.4 45 200-244 18-80 (161)
121 >1yz4_A DUSP15, dual specifici 32.1 23 0.00068 13.2 2.5 59 39-97 52-126 (160)
122 >1dzl_A Late major capsid prot 32.1 23 0.00068 13.2 1.7 14 198-211 90-103 (505)
123 >2vqp_A Matrix protein; viral 31.8 15 0.00044 14.9 0.6 18 37-54 18-36 (133)
124 >2pt0_A MYO-inositol hexaphosp 31.5 23 0.00069 13.1 8.3 89 6-100 52-158 (214)
125 >3pfk_A Phosphofructokinase; t 31.3 24 0.0007 13.1 4.3 35 315-351 2-37 (186)
126 >1vcp_A Semliki forest virus c 31.2 24 0.0007 13.1 2.4 12 209-220 41-52 (86)
127 >1gqe_A Release factor 2, RF2; 31.1 24 0.0007 13.1 12.0 93 539-634 23-116 (120)
128 >2e9h_A EIF-5, eukaryotic tran 31.1 24 0.0007 13.1 1.8 32 42-73 2-35 (54)
129 >1vho_A Endoglucanase; structu 30.8 16 0.00047 14.7 0.6 63 273-335 60-128 (259)
130 >1qtq_A GLNRS, protein (glutam 30.7 14 0.0004 15.3 0.3 71 140-228 31-101 (175)
131 >3e3v_A Regulatory protein REC 30.6 19 0.00057 13.9 1.0 18 138-155 36-53 (64)
132 >1vd4_A Transcription initiati 30.5 24 0.00071 13.0 1.8 30 38-69 14-47 (62)
133 >1iq0_A Arginyl-tRNA synthetas 30.0 25 0.00073 12.9 2.8 28 353-380 41-68 (209)
134 >1pfk_A Phosphofructokinase; t 29.8 25 0.00073 12.9 4.1 34 315-350 3-37 (185)
135 >2w84_A Peroxisomal membrane p 29.7 25 0.00073 12.9 2.5 36 121-156 18-54 (70)
136 >1efd_N Ferrichrome-binding pe 29.2 25 0.00074 12.9 1.4 69 284-355 29-101 (104)
137 >1svp_A Sindbis virus capsid p 29.1 25 0.00075 12.8 2.4 12 209-220 41-52 (89)
138 >1kxf_A Sindbis virus capsid p 29.1 25 0.00075 12.8 2.4 12 209-220 41-52 (87)
139 >1yzm_A FYVE-finger-containing 29.1 25 0.00075 12.8 6.8 44 590-633 6-49 (51)
140 >1zzw_A Dual specificity prote 29.0 25 0.00075 12.8 2.7 40 61-100 87-129 (149)
141 >3eol_A Isocitrate lyase; seat 28.9 25 0.00075 12.8 1.5 34 275-308 48-81 (85)
142 >1yqf_A Hypothetical protein L 28.8 26 0.00076 12.8 1.6 16 210-225 98-113 (203)
143 >1twf_I B12.6, DNA-directed RN 28.5 26 0.00076 12.7 2.6 29 41-69 20-55 (69)
144 >1ep5_B Capsid protein C, coat 28.3 26 0.00077 12.7 2.4 12 209-220 41-52 (87)
145 >1ky9_A Protease DO, DEGP, HTR 28.2 26 0.00077 12.7 2.6 23 209-231 85-107 (134)
146 >1z0k_B FYVE-finger-containing 28.2 26 0.00077 12.7 6.1 43 590-632 24-66 (69)
147 >3iyj_F Major capsid protein L 28.2 23 0.00069 13.1 1.1 11 56-66 88-100 (495)
148 >1p0z_A Sensor kinase CITA; tr 27.9 26 0.00078 12.6 2.8 22 205-226 103-124 (131)
149 >1gq2_A Malic enzyme; oxidored 27.7 27 0.00079 12.6 2.6 45 280-324 95-140 (298)
150 >2vpu_A TET3, 354AA long hypot 27.7 18 0.00053 14.2 0.4 40 298-337 93-133 (259)
151 >1i7d_A DNA topoisomerase III; 27.6 27 0.00079 12.6 3.1 59 305-364 86-144 (152)
152 >3fos_A Sensor protein; sensor 27.6 27 0.00079 12.6 1.6 68 144-225 27-98 (100)
153 >3ff5_A PEX14P, peroxisomal bi 27.6 27 0.00079 12.6 3.3 37 120-156 12-49 (54)
154 >2pfs_A USP, universal stress 27.5 27 0.00079 12.6 4.6 37 314-353 6-42 (150)
155 >3h7c_X Agmatine deiminase; st 27.4 27 0.00079 12.6 3.3 72 284-355 36-116 (134)
156 >2iw3_A Elongation factor 3A; 27.3 27 0.0008 12.6 1.6 18 358-375 22-39 (170)
157 >2be1_A Serine/threonine-prote 26.9 27 0.00081 12.5 1.5 13 198-210 52-64 (109)
158 >3e3v_A Regulatory protein REC 26.9 27 0.00081 12.5 3.8 35 122-156 5-41 (45)
159 >2hjn_A MPS1 binder 1, mainten 26.5 28 0.00082 12.5 1.9 30 345-374 61-90 (236)
160 >1ep5_B Capsid protein C, coat 26.0 28 0.00083 12.4 2.1 22 206-228 8-33 (70)
161 >2ysa_A Retinoblastoma-binding 26.0 15 0.00045 14.8 -0.2 15 61-75 7-21 (55)
162 >2q1f_A Chondroitinase; alpha 25.8 19 0.00055 14.0 0.2 67 156-237 117-186 (190)
163 >1jmu_B Protein MU-1; protein- 25.4 26 0.00076 12.8 0.9 16 140-155 79-94 (145)
164 >1zxx_A 6-phosphofructokinase; 25.4 29 0.00085 12.3 4.8 15 231-245 58-72 (182)
165 >1rxd_A Protein tyrosine phosp 25.1 29 0.00086 12.3 2.3 28 67-94 107-134 (159)
166 >2yvq_A Carbamoyl-phosphate sy 25.0 15 0.00046 14.8 -0.3 16 285-301 45-60 (143)
167 >3e0o_A Peptide methionine sul 24.7 30 0.00087 12.2 1.4 12 149-160 17-28 (131)
168 >2z08_A Universal stress prote 24.6 30 0.00088 12.2 3.7 37 314-353 2-38 (137)
169 >2gf3_A MSOX, monomeric sarcos 24.4 19 0.00055 14.1 0.0 20 140-159 18-37 (228)
170 >3dlo_A Universal stress prote 24.3 30 0.00089 12.1 5.1 38 314-354 24-62 (155)
171 >3clc_A Regulatory protein; pr 24.2 30 0.00089 12.1 1.4 39 146-184 33-71 (82)
172 >3icy_A Sensor protein; sensor 23.9 30 0.0009 12.1 2.8 21 206-226 55-75 (77)
173 >1mbm_A NSP4 proteinase, chymo 23.8 31 0.0009 12.1 1.1 14 59-72 102-116 (149)
174 >1ev0_A MINE; topological spec 23.6 25 0.00074 12.8 0.6 25 4-30 5-29 (58)
175 >3c1d_A Protein ORAA, regulato 23.5 31 0.00091 12.0 4.0 34 123-156 6-40 (47)
176 >2yzq_A Putative uncharacteriz 23.1 31 0.00093 12.0 2.3 18 206-223 32-49 (77)
177 >3d5l_A Regulatory protein REC 23.1 31 0.00093 12.0 3.9 35 122-156 5-41 (45)
178 >1tq8_A Hypothetical protein R 23.0 31 0.00093 11.9 3.0 41 312-355 15-55 (128)
179 >1fmk_A C-SRC, P60-SRC, tyrosi 23.0 11 0.00032 16.2 -1.4 76 141-221 6-84 (192)
180 >2jer_A Agmatine deiminase; hy 22.8 32 0.00094 11.9 2.5 72 284-355 37-116 (133)
181 >2k4q_A Major tail protein V; 22.7 32 0.00094 11.9 4.9 36 316-357 84-119 (156)
182 >1yzy_A Hypothetical protein H 22.6 32 0.00094 11.9 1.8 16 206-221 110-125 (413)
183 >2ja2_A Glutamyl-tRNA syntheta 22.5 32 0.00095 11.9 2.9 34 132-165 91-126 (168)
184 >1ka5_A Phosphocarrier protein 22.4 32 0.00095 11.8 5.1 62 306-377 22-83 (88)
185 >2pke_A Haloacid delahogenase- 22.1 33 0.00096 11.8 1.2 61 275-335 24-87 (163)
186 >1ryi_A Glycine oxidase; flavo 22.1 25 0.00074 12.9 0.3 17 143-159 35-51 (228)
187 >3c8f_A Pyruvate formate-lyase 22.1 33 0.00097 11.8 6.4 78 286-363 94-181 (245)
188 >2jk1_A HUPR, hydrogenase tran 22.0 33 0.00097 11.8 6.0 99 273-380 3-105 (139)
189 >1xng_A NH(3)-dependent NAD(+) 22.0 33 0.00097 11.8 3.4 90 60-158 9-106 (136)
190 >2om6_A Probable phosphoserine 21.9 33 0.00097 11.8 2.3 29 272-300 91-122 (150)
191 >3f2b_A DNA-directed DNA polym 21.8 33 0.00098 11.8 2.5 28 149-176 93-120 (230)
192 >1ps1_A Pentalenene synthase; 21.6 33 0.00098 11.7 4.0 38 277-314 36-73 (337)
193 >1a1t_A Nucleocapsid protein; 21.4 31 0.00091 12.0 0.7 11 61-71 12-22 (55)
194 >3ezz_A Dual specificity prote 21.4 34 0.00099 11.7 2.5 46 55-100 78-127 (144)
195 >1djl_A Transhydrogenase DIII; 21.3 34 0.001 11.7 4.2 18 337-354 68-85 (207)
196 >3hno_A Pyrophosphate-dependen 21.2 34 0.001 11.7 4.7 38 315-355 4-44 (211)
197 >1pi1_A MOB1A; mitotic EXIT ne 20.9 34 0.001 11.6 1.3 27 348-374 11-37 (185)
198 >2vug_A PAB1020; RNA, ligase, 20.9 2.3 6.8E-05 22.4 -5.2 29 15-52 4-32 (101)
199 >1y56_B Sarcosine oxidase; deh 20.9 33 0.00097 11.8 0.7 15 143-157 23-37 (222)
200 >2yvy_A MGTE, Mg2+ transporter 20.6 35 0.001 11.6 2.3 17 207-223 29-45 (75)
201 >1bjt_A Topoisomerase II; quat 20.5 35 0.001 11.6 2.8 85 294-387 90-179 (202)
202 >1l6w_A Fructose-6-phosphate a 20.5 31 0.0009 12.1 0.5 71 76-152 30-107 (196)
203 >1vcp_A Semliki forest virus c 20.5 35 0.001 11.5 2.4 21 207-228 2-26 (63)
204 >1evy_A Glycerol-3-phosphate d 20.4 24 0.0007 13.1 -0.1 14 509-522 117-130 (167)
205 >2csx_A Methionyl-tRNA synthet 20.3 35 0.001 11.5 2.9 26 354-379 301-326 (348)
206 >1kcq_A Gelsolin, brevin, ADF, 20.2 35 0.001 11.5 4.5 55 315-369 37-93 (104)
207 >3eat_X Pyoverdine biosynthesi 20.2 23 0.00068 13.2 -0.2 13 87-99 46-58 (200)
No 1
>>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:1-145)
Probab=99.96 E-value=3.5e-30 Score=296.65 Aligned_cols=145 Identities=34% Similarity=0.638 Sum_probs=133.9
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 81885877682036777889999999999999999973267775789999850688535101244225677410345542
Q gi|254780834|r 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 (648)
Q Consensus 95 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~ 174 (648)
.|||++|... ..++..+++.++++++.|++|||.+|+++.+++|++||.+|||++++|+.|+|||||.+|+.|..++.
T Consensus 1 ~~gi~l~~~~--~~~~~~~~~~l~~~~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~F~lGyap~~~~~l~~~~~ 78 (145)
T 1dd9_A 1 MRGSHHHHHH--GSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFG 78 (145)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHC
T ss_pred CCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9875445667--88767799999999999999999996897408999999977989999986512547655799999987
Q ss_pred CCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCC
Q ss_conf 059973452320121003465410000167168889707785888501001465530010387676535
Q gi|254780834|r 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 (648)
Q Consensus 175 ~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~ 243 (648)
++|++.++|.++||+..+++|. +||+|+|||||||+|..|+|||||||+|+++ .|||||||||++|+
T Consensus 79 ~~~~~~~~l~~~GL~~~~~~g~-~~d~F~~RiifPI~d~~G~vvgF~gR~l~~~-~pKYlNspet~iF~ 145 (145)
T 1dd9_A 79 GNPENRQSLIDAGMLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGND-TPKYLNSPETDIFH 145 (145)
T ss_dssp SSHHHHHHHHHTTSEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSSC-SCSEEECCCCSSCC
T ss_pred HCCCCHHHHHHCCCEEECCCCC-CHHHHCCEEEEEEECCCCEEEEEEEEECCCC-CCCCCCCCCCCCCC
T ss_conf 5798767787547734346533-0122223268888516621899931231666-43245788754544
No 2
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:96-224)
Probab=99.95 E-value=8.6e-28 Score=274.63 Aligned_cols=127 Identities=32% Similarity=0.573 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCC
Q ss_conf 77889999999999999999973267775789999850688535101244225677410345542059973452320121
Q gi|254780834|r 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 (648)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~ 189 (648)
+...+..++++++.|++|||.+|++ +++|++||++|||++++|+.|+|||||++|. +..++.++||+.+++.++||+
T Consensus 3 k~~~~~~~~~i~~~a~~fy~~~L~~--~~~a~~YL~~Rgl~~e~i~~F~lGyap~~~~-~~~~~~~~~~~~~~l~~~Gl~ 79 (129)
T 2au3_A 3 KISKDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPSSEA-LVKVLKENDLLEAYLETKNLL 79 (129)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEECCCHHH-HHHHHHHHTCHHHHHTTTCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHHHCCCCCCHH-HHHHHHHCCHHHHHHHHHCCC
T ss_conf 2210268999999999999875312--5679999886487477775432114776245-666664112037777752233
Q ss_pred EECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCC
Q ss_conf 0034654100001671688897077858885010014655300103876765
Q gi|254780834|r 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 (648)
Q Consensus 190 ~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~i 241 (648)
...+++ +||+|+|||||||+|..|+|||||||+|+++..|||||||||+|
T Consensus 80 ~~~~~~--~~d~F~~RiifPI~d~~G~vvgF~GR~l~~~~~pKYlNSpeT~i 129 (129)
T 2au3_A 80 SPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRV 129 (129)
T ss_dssp CSSTTC--CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSS
T ss_pred CCCCCC--CCCCHHHCCCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 135787--65310001244304258956643100014566755345443300
No 3
>>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein; HET: DNA; 1.60A {Escherichia coli} (A:146-285)
Probab=99.82 E-value=8.7e-20 Score=200.98 Aligned_cols=139 Identities=35% Similarity=0.683 Sum_probs=132.0
Q ss_pred CCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECC
Q ss_conf 21011081788886433100002356787089971438899987435542113432136626789885126818996178
Q gi|254780834|r 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 (648)
Q Consensus 244 K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDg 323 (648)
||+.|||++.+.+.+++ .++++||||++|+++++++|+.++|+++|+++|..|+..|.+..++|++|||+
T Consensus 1 K~~~lyg~~~~~~~~~~----------~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~i~i~~D~ 70 (140)
T 1dd9_A 1 KGRQLYGLYEAQQDNAE----------PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDG 70 (140)
T ss_dssp TTTCCBTHHHHHHTCSS----------CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEES
T ss_pred CHHHCCCHHHHHHHCCC----------CCCEEEEECHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 20211325554321155----------65259995579899998715234401331021178999987407745787536
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 866225777888888777536973067525788888899720366889988641499279999999853
Q gi|254780834|r 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 (648)
Q Consensus 324 D~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~ 392 (648)
|.||++++.++...+..+...+..+++..+|+|+||+|+++++|.++|.++++++.|+.+|+++.+.++
T Consensus 71 D~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kD~nd~~~~~g~e~~~~~i~~a~~~~~~~~~~~~~~ 139 (140)
T 1dd9_A 71 DRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQ 139 (140)
T ss_dssp SHHHHHHHHHHHHHHGGGCCTTCEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 620216788589987687359973899980589988999885177999999862888999999999855
No 4
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:225-349)
Probab=99.79 E-value=1.1e-18 Score=190.74 Aligned_cols=124 Identities=45% Similarity=0.770 Sum_probs=117.3
Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEE
Q ss_conf 35210110817888864331000023567870899714388999874355421134321366267898851268189961
Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 (648)
Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~f 321 (648)
|+|++.|||++.++..+++. ++++||||++|+++++|+|++++|+++||+++..|+..+.+..++||||+
T Consensus 1 f~k~~~lygl~~~~~~~~~~----------~~v~i~EG~~dals~~~~g~~~~~~~~g~~~~~~~~~~l~~~~~~vvi~~ 70 (125)
T 2au3_A 1 FKKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILY 70 (125)
T ss_dssp CCGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEEC
T ss_pred ECCCCCCCCCHHHHHHHCCC----------CCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 03464444410122210134----------41033046235678876186553343123433688988761277236742
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHC
Q ss_conf 788662257778888887775369730675257888888997203668899886414
Q gi|254780834|r 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 (648)
Q Consensus 322 DgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A 378 (648)
|+|.||++|+.+....+ ...+..++++.+|+++|++|+++++|.+++++++++|
T Consensus 71 D~D~aG~~~a~~~~~~l---~~~~~~~~~~~~p~~kD~nD~l~~~g~e~l~~~l~~a 124 (125)
T 2au3_A 71 DGDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSS 124 (125)
T ss_dssp CSSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHH---HCCCCCEEEEECCCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 78677775578877654---0236521366589998849999864999999999668
No 5
>>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} (A:)
Probab=99.75 E-value=7.2e-19 Score=192.55 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=94.3
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCHHHH-HCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 78708997143889998743554211343-21366267898851268--1899617886622577788888877753697
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~-Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~ 346 (648)
..+++||||||||||+|||+|++||||++ |||+|.+|+++|+++++ +|++|||||.||++|+.+.... ..
T Consensus 3 k~~~viIVEG~~D~i~l~~~G~~n~Va~~~gta~~~~~l~~l~~~~~~~~iil~~D~D~aG~~a~~~l~~~-------l~ 75 (119)
T 2fcj_A 3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRM-------FP 75 (119)
T ss_dssp CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHH-------CT
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH-------CC
T ss_conf 28989998088999999981898869768986373999999999708984899844892889999999986-------78
Q ss_pred CEEEEECCCC---------CCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 3067525788---------888899720366889988641499
Q gi|254780834|r 347 RVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 347 ~v~vv~LP~G---------~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648)
.++++.+|.| +||+++++++|.+++..++++|.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~d~~e~l~~~~~~~~~~~i~~a~~ 118 (119)
T 2fcj_A 76 EAEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118 (119)
T ss_dssp TSEEECCCTTTCSTTTSCHHHHHHHHHHTTCCBCGGGTC----
T ss_pred CCCEEEECCCCCCHHCCCHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 5538885465410202456789999997761688988887337
No 6
>>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} (1:)
Probab=99.70 E-value=6.6e-18 Score=183.71 Aligned_cols=114 Identities=29% Similarity=0.227 Sum_probs=105.0
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC
Q ss_conf 10110817888864331000023567870899714388999874355421134321366267898851268189961788
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD 324 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD 324 (648)
+++|||++++++.++.. ..+++|||||++||++|+++|++||||++|+++++.|+..|+++ .+||+|||+|
T Consensus 2 ~e~lygl~~~~~~~~~~--------~~~~viIvEG~~Dalsl~~~G~~~~va~~g~~~~~~~~~~l~~~-~~vii~~D~D 72 (118)
T 1t6t_1 2 TKEPRNLSEWIKELKKA--------SREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDXLEGKW-EKVILLFDLD 72 (118)
T ss_dssp ---CCSHHHHHHHHHHH--------TTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHHHHHHHTTTC-SEEEECCCSS
T ss_pred CCCHHHHHHHHHHHHHC--------CCCCEEEEECHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHCC-CCEEEEECCC
T ss_conf 71034089999999981--------79968998145999999983412324128875458999998348-9269984898
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf 662257778888887775369730675257888888997203668899886414992
Q gi|254780834|r 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648)
Q Consensus 325 ~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648)
.||++++.+.++. ++|+|+|||++++++|++++..+++++.+.
T Consensus 73 ~~G~~~~~~~~~~--------------l~~~g~D~~~~~~~~g~~~~~~~i~~a~~~ 115 (118)
T 1t6t_1 73 THGERINQKXKEL--------------LSSQGFLVDENFRNFLKKWNIIHIEEINGG 115 (118)
T ss_dssp HHHHHHHHHHHHH--------------HHHTTCEEECHHHHHHHHTTCCCGGGC---
T ss_pred HHHHHHHHHHHHH--------------HHHCCCEEEHHHHHHHHHHCHHHHHHHHCC
T ss_conf 8899999999999--------------998699442459999988486999865476
No 7
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203)
Probab=99.59 E-value=3.1e-15 Score=159.19 Aligned_cols=117 Identities=15% Similarity=0.126 Sum_probs=100.4
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHC---CCEEE
Q ss_conf 1011081788886433100002356787089971438899987435542113---43213662678988512---68189
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKL---SPRIV 318 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~---~~~vv 318 (648)
|+.|||++.+.+. +.++||||+||+++++++|+++++| +.|++++..|+..+.++ ..+||
T Consensus 1 s~~ly~~~~~~~~--------------~~i~i~EG~~Dalsl~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~iv 66 (129)
T 1q57_A 1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII 66 (129)
T ss_dssp TTCEETGGGCSSE--------------EEEEEESSHHHHHHHTTTTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEE
T ss_pred CCCCCCEECCCCC--------------CEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 6642040204799--------------98999886689999999658886156157542104889999899863698799
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf 961788662257778888887775369730675257888888997203668899886414992
Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648)
Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648)
+|||+|+||++|+.|....+ ...-..+.+|+++||+|+++++|.++++..+++++++
T Consensus 67 i~~D~D~aG~~~a~~~~~~~------~~~~~~~~~p~~kD~nd~l~~~~~~~~~~~l~~a~~~ 123 (129)
T 1q57_A 67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQVWNAGPW 123 (129)
T ss_dssp EECCSSHHHHHHHHHHHHHS------CGGGEEECCCSSSSHHHHHTTSCHHHHHHHHTTCCCC
T ss_pred EECCCCHHHHHHHHHHHHHC------CCCEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCC
T ss_conf 96089989999999998755------7755999856656874566642313456787752136
No 8
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:138-255)
Probab=99.57 E-value=8.5e-15 Score=155.12 Aligned_cols=111 Identities=15% Similarity=0.127 Sum_probs=95.4
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCC---CEEE
Q ss_conf 1011081788886433100002356787089971438899987435542113---432136626789885126---8189
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLS---PRIV 318 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~---~~vv 318 (648)
|+.|||++.+++. ++++||||++|++|++|+|++++|+ ++|++++..|+..+.++. .+|+
T Consensus 1 S~~l~~~~~~~~~--------------~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ii 66 (118)
T 1nui_A 1 SDALFGKHLWNGG--------------KKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQII 66 (118)
T ss_dssp TTCCTTGGGCCCB--------------SCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEE
T ss_pred CCCCEEEEECCCC--------------CEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 4632022104687--------------66999788136999999842688654367630121467788888743677599
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 961788662257778888887775369730675257888888997203668899886
Q gi|254780834|r 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 319 l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll 375 (648)
+|||+|.||++++.+..+.+ ...-..+.+|+|+||+|+++++|.++|+++|
T Consensus 67 i~~DnD~aG~~~~~~~~~~l------~~~~~~~~~p~~kD~nd~l~~~g~~~~~~~i 117 (118)
T 1nui_A 67 LMFDMDEAGRKAVEEAAQVL------PAGKVRVAVLPCKDANECHLNGHDREIMEQV 117 (118)
T ss_dssp EECCSSHHHHHHHHHHHHHS------CTTTEEECCCSSSSHHHHHTTTTHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHHC------CCCCEEEEECCCCCHHHHHHCCCHHHHHHHH
T ss_conf 97789989999999999875------7787999508987989998819999999975
No 9
>>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:23-69)
Probab=99.56 E-value=2.6e-15 Score=159.80 Aligned_cols=47 Identities=47% Similarity=1.025 Sum_probs=46.0
Q ss_pred HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
Q ss_conf 5412221015887777755753458888587879817897467136888878
Q gi|254780834|r 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 (648)
Q Consensus 21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd 72 (648)
||+||+|+|+|+| |||+||||+||||||+|+|+|++|||||||+|||
T Consensus 1 ig~~v~l~~~G~~-----~~~~CPfH~ek~PSf~V~~~k~~~~CFgCg~gGd 47 (47)
T 1d0q_A 1 IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 47 (47)
T ss_dssp HTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred HHHCCCEEECCCC-----EEEECCCCCCCCCCEEECCCCCEEEEECCCCCCH
T ss_conf 9640786887966-----0787121279887438816841035630036633
No 10
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:20-66)
Probab=99.55 E-value=3.5e-15 Score=158.62 Aligned_cols=47 Identities=43% Similarity=0.940 Sum_probs=46.0
Q ss_pred HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
Q ss_conf 5412221015887777755753458888587879817897467136888878
Q gi|254780834|r 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 (648)
Q Consensus 21 v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd 72 (648)
||+||+|+|+|+| ||++||||+||||||+|+|+||+|||||||+|||
T Consensus 1 i~~yv~l~~~G~~-----~~~~CPfH~ek~PSf~v~~~k~~~~CFgCg~gGd 47 (47)
T 2au3_A 1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47 (47)
T ss_dssp HHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEEC
T ss_pred HHHCEEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCC
T ss_conf 8626048976974-----7987989999899559988999899658998977
No 11
>>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A {Bacillus stearothermophilus} (A:1-22,A:70-103)
Probab=97.86 E-value=4.4e-05 Score=65.80 Aligned_cols=49 Identities=35% Similarity=0.575 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648)
+||.+.||+||..+|||+|+ |+|+|++|
T Consensus 4 ~ip~e~i~~irr~~div~v~----------------------------------------------------fsflmdie 31 (56)
T 1d0q_A 4 RIPEETIEAIRRGVDIVDVA----------------------------------------------------FTFLMDIE 31 (56)
T ss_dssp TSCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHCCHHHHH----------------------------------------------------HHHHHHHH
T ss_conf 88989999999859999999----------------------------------------------------99999996
Q ss_pred CCCHHHHHHHHHHHHCCCCCC
Q ss_conf 999799999999981885877
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPV 102 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~ 102 (648)
|++|.||++.||.++||++..
T Consensus 32 gi~fiea~krla~ka~vdls~ 52 (56)
T 1d0q_A 32 GIPFVEAAKRLAAKAGVDLSV 52 (56)
T ss_dssp TCCHHHHHHHHHHHHTCCCGG
T ss_pred CCCHHHHHHHHHHHHCCCCCC
T ss_conf 869999999999996998777
No 12
>>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis} (A:)
Probab=97.63 E-value=0.005 Score=46.91 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 30379999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648)
Q Consensus 479 ~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648)
.....|+.+|..|+.+|+.+.++...|...+|.++.++.||..+.+.+.++...+...+...+...+.
T Consensus 29 ~~~~aE~~vLg~ll~~p~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~~ 96 (200)
T 2r5u_A 29 QDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGL 96 (200)
T ss_dssp CCHHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 88999999999999387279999985899874739999999999999986998765788999877687
No 13
>>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A (A:1-155)
Probab=97.40 E-value=0.0089 Score=44.59 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 037999999999847788999984430023799889999999999975388999899998851112
Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648)
Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648)
..-.|+.+|.+|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+...+
T Consensus 13 ~~eaE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~ai~~l~~~g~~iD~~~v~~~l~~~~ 78 (155)
T 2r6a_A 13 SIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASE 78 (155)
T ss_dssp CHHHHHHHHHHHHHCGGGHHHHHHHCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 899999999999859626999994059877799899999999999997699999999999986459
No 14
>>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A* (C:1-100)
Probab=97.11 E-value=0.0072 Score=45.45 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53037999999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648)
Q Consensus 478 ~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648)
.....+|+.||+.|+++|+++..+... ...+|.++.++.|+..+...+.++..+++..+...+.++. ..++.++
T Consensus 4 ~~~~~AEr~LL~~ml~~~~~~~~v~~~-~~~~F~~~~yq~i~~~l~~~~~e~~~~~~a~f~~~l~de~-~~~~~~i---- 77 (100)
T 2r6a_C 4 PAFQNAERLLLAHXXRSRDVALVVQER-IGGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGEL-QPLASEL---- 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH-CCSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCSSS-HHHHHHH----
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHH-HHHHHHH----
T ss_conf 943999999999998794899999977-2246615989999999999984144305889999965111-3669999----
Q ss_pred HHHHHHHCCCCCCHHHHHH
Q ss_conf 5433320256899889999
Q gi|254780834|r 558 RDAGLWSATTEANIVDVRQ 576 (648)
Q Consensus 558 ~~~~~~~~~~e~~~~d~~e 576 (648)
.......+.+.+.+.+
T Consensus 78 ---~~~~~~~e~s~~ei~D 93 (100)
T 2r6a_C 78 ---SLLLIADDVSEQELED 93 (100)
T ss_dssp ---TTSCCCSSCCHHHHHH
T ss_pred ---HHHHCCCCCCHHHHHH
T ss_conf ---9987036651788999
No 15
>>1b79_A DNAB helicase; hexamer, DNA replication; 2.30A {Escherichia coli} (A:)
Probab=96.86 E-value=0.03 Score=39.67 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 037999999999847788999984430023799889999999999975388999899998851112899
Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 (648)
Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~e 548 (648)
..-.|+.+|..|+.+|+.+.++...+...+|.++.++.||..+.+.+.++...+...+...+...+.-.
T Consensus 20 ~~~aE~~vLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~~~~id~~tv~~~l~~~~~~~ 88 (119)
T 1b79_A 20 SIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLD 88 (119)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTTHH
T ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH
T ss_conf 889999999999949408999997659998274989999999999850599988999999998679735
No 16
>>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C (A:)
Probab=96.82 E-value=0.036 Score=39.00 Aligned_cols=70 Identities=10% Similarity=-0.059 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3799999999984778899998443002379988999999999997538899989999885111289999
Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 (648)
Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL 550 (648)
...|+.+|..++.+|+.+.++...+...+|.++.++.||..+.+.+.++...|...+...+.+.+.-..+
T Consensus 11 ~~aE~~lLg~ll~~~~~~~~v~~~L~~edF~~~~h~~If~~i~~l~~~g~~iD~~tv~~~l~~~~~~~~~ 80 (123)
T 3gxv_A 11 QNIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDKQIKEE 80 (123)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHTSCSSSCCCHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
T ss_conf 9999999999996972899999668999829898999999999998456888699999999876981431
No 17
>>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} (A:1-152)
Probab=96.71 E-value=0.088 Score=35.44 Aligned_cols=66 Identities=12% Similarity=0.133 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 03799999999984778899998443-0023799889999999999975388999899998851112
Q gi|254780834|r 480 PSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648)
Q Consensus 480 ~~~~E~~LL~llI~~P~l~~~~~e~l-~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648)
....|+.+|..++.+|+.+.++.+.+ ...+|.++.++.||..+.+.+..+...|...+...+...+
T Consensus 9 ~~~aE~~vLg~ll~~~~~~~~~~~~ll~~e~F~~~~h~~If~ai~~l~~~~~~iD~~tv~~~l~~~~ 75 (152)
T 2q6t_A 9 SLEAEQSVLGSILLDSDVMDEVEGLLPSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRG 75 (152)
T ss_dssp CHHHHHHHHHHHHHCGGGHHHHHHHCCSGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 8999999999998596489999987588653488889999999999996699999999999985568
No 18
>>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} (A:1-154)
Probab=96.02 E-value=0.19 Score=32.34 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 37999999999847788999984430023799889999999999975388999899998851112
Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648)
Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648)
.-.|+.+|..++.+|+.+.+ -.+...+|.++.++.||..+.+.+.++...+...+...+....
T Consensus 15 ~eaE~~vLg~ll~~~~~~~~--i~L~~edF~~~~h~~If~~i~~l~~~~~~iD~~~l~~~l~~~~ 77 (154)
T 3bgw_A 15 EYAEQAVLGSILTEPELIKE--CPLTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEKL 77 (154)
T ss_dssp HHHHHHHHHHHHHSTTHHHH--SCCCGGGSCTTHHHHHHHHHHHHHHTTCCCSHHHHHHHSSTTC
T ss_pred HHHHHHHHHHHHCCHHHHHH--CEECHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999879745644--1008788888899999999999997699999999999986388
No 19
>>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication; HET: DNA MSE; 2.80A {Escherichia coli} (A:1-109)
Probab=91.36 E-value=1.2 Score=24.93 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648)
Q Consensus 484 E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648)
.+.+|.++++||.+...+.+.-.-.....+. -.++..+++.+..++......+.++..+....+.++.+..+.
T Consensus 18 ~r~lI~LLLq~P~La~~v~~~~~l~~~~~~g-~~lL~~L~~~~~~~p~~~t~qLLE~~r~t~~~~~L~~LA~~~ 90 (109)
T 1t3w_A 18 XRILIGLLVQNPELATLVPPLENLDENKLPG-LGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSXWD 90 (109)
T ss_dssp HHHHHHHHHHCGGGGGGCCCCTTSCGGGSTT-HHHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHCCCCHHHHHHCCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 9999999986909775198446675445501-499999999998589998999999981986899999998675
No 20
>>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus} (A:1-19,A:67-95)
Probab=90.85 E-value=0.3 Score=30.54 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 9899898859997999999999818858
Q gi|254780834|r 73 HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 73 ~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
+|+||.-+|++++-||...||.|+|+.+
T Consensus 20 aikfvslye~isyfeaa~~lakr~g~kl 47 (48)
T 2au3_A 20 AIKFVSLYEDISYFEAALELAKRYGKKL 47 (48)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 7899999829988999999999708652
No 21
>>1xmx_A Hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative, structural genomics, PSI, midwest center for structural genomics; 2.10A {Vibrio cholerae} (A:1-141)
Probab=82.54 E-value=3.4 Score=20.86 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHH-C-CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf 355421134321366267898851-2-68189961788662257778888887775369730675257888888997203
Q gi|254780834|r 289 AGVQNVVSSLGTALTEYQLRLLWK-L-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648)
Q Consensus 289 ~G~~n~va~~Gtalt~~~~~~l~r-~-~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648)
+|.+--|+++|+.-...-...+.+ + .++|+|.++.+..+....++.. +.+.|.++.++.+++-.|+++..+.-
T Consensus 1 ~~M~vli~~iG~~~~~~~~~i~~~~~~~d~v~li~s~~~~~~~~~l~~~-----l~~~~~~~~~~~i~d~~d~~~~~~~i 75 (141)
T 1xmx_A 1 NAMAIHVGIIDQDPVRLVTPLLDHRTVSRHIIFIGDHTQTVIYQRLSDV-----LNKRNISTDFFEIPAGSNTSAIKSAI 75 (141)
T ss_dssp CTTEEEEEECCSSCHHHHHHHHSTTCCCCEEEEEECGGGHHHHHHHHHH-----HHHTTCEEEEEECCSSSCHHHHHHHH
T ss_pred CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHH-----HHHCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 9618999996377221201755478998679999773258899999999-----98659861798457644779999999
No 22
>>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima MSB8} PDB: 2gaj_A* (A:1-35,A:63-127)
Probab=78.91 E-value=2.9 Score=21.50 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=55.9
Q ss_pred CEEEEECCHHHHHHHH-HCCCC-CCHHHHHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7089971438899987-43554-21134321366267898851268--18996178866225777888888777536973
Q gi|254780834|r 272 SFIILVEGYMDVLSLC-QAGVQ-NVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 (648)
Q Consensus 272 ~~~i~vEGy~Dvi~l~-~~G~~-n~va~~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~ 347 (648)
..+|+||..--.=.+- -.|-. -|||++| ...|+..|+++.+ .||++-|.|.-|..=++..++. +.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---kkk~i~~Lkkl~k~adIIiATD~DREGE~Ia~eIl~~----~~~~kp 78 (100)
T 2gai_A 6 KKYIVVESPAKAKTIKSILGNEYEVFASMG---KEKVVEKLKDLAKKGELLIASDMDREGEAIAWHIARV----TNTLGR 78 (100)
T ss_dssp -CEEEESCHHHHHHHHHHHGGGSEEEECCS---CHHHHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHH----HTCTTS
T ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEEECC---HHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHH----HCCCCC
T ss_conf 579998797999999998094989996146---6999999999846898999489981520999999998----588898
Q ss_pred EEEEECCCCCCHHHHH
Q ss_conf 0675257888888997
Q gi|254780834|r 348 VNFVLLSRGEDPDSFI 363 (648)
Q Consensus 348 v~vv~LP~G~DPDe~i 363 (648)
++=+.+ ....|.+..
T Consensus 79 vkRl~f-sslT~~~I~ 93 (100)
T 2gai_A 79 KNRIVF-SEITPRVIR 93 (100)
T ss_dssp SCBCCC-SSCCHHHHH
T ss_pred EEEEEE-ECCCHHHHH
T ss_conf 058997-107999999
No 23
>>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} (A:1-88,A:598-781)
Probab=78.73 E-value=1.5 Score=24.06 Aligned_cols=79 Identities=18% Similarity=0.148 Sum_probs=56.5
Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 87089971438899987435542113432136626789885126818996178866225777888888777536973067
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648)
+...+|+-++-- .|...-+|.++|--..-.+.|| .| ..|.+||
T Consensus 47 ~~~~~i~~~~py---------~~g~~HiGH~~~~~~~Dv~~Ry------------------~r---------~~G~~VK- 89 (272)
T 1ffy_A 47 NETFILHDGPPY---------ANGNLHMGHALNKILKDFIVRY------------------KT---------MQGFYAK- 89 (272)
T ss_dssp SCBCCEECCCCB---------SSSCCCHHHHHHHHHHHHHHHH------------------HH---------TTTCBCS-
T ss_pred CCCEEEECCCCC---------CCCCCHHHHHHHHHHHHHHHHH------------------HH---------CCCCCCC-
T ss_conf 996899648999---------8887414377888999999999------------------87---------3799665-
Q ss_pred EECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf 5257888888997203668899886414992799999
Q gi|254780834|r 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 (648)
Q Consensus 351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~ 387 (648)
.+-++.||++++.++|+|+++-++-.+.+..|+-|.
T Consensus 90 -SlGN~V~p~e~l~~yg~D~lR~~Ll~~~~~~d~~fs 125 (272)
T 1ffy_A 90 -SLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRIS 125 (272)
T ss_dssp -SSSCCCCHHHHHHHTCHHHHHHHHHTSCTTSCEECC
T ss_pred -CCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCCCCCC
T ss_conf -577876621103556864899999736865578644
No 24
>>3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* (C:1-161,C:205-230)
Probab=78.41 E-value=4.4 Score=19.79 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=38.8
Q ss_pred CCCCHHHHHCCCCHH-HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHH------HHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 542113432136626-7898851268189961788662257778888887------775369730675257888888997
Q gi|254780834|r 291 VQNVVSSLGTALTEY-QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL------CHLIPGNRVNFVLLSRGEDPDSFI 363 (648)
Q Consensus 291 ~~n~va~~Gtalt~~-~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l------~~l~~g~~v~vv~LP~G~DPDe~i 363 (648)
|.+-+..+|+.+... ++..| || .+|+|+-|.|.-|.. .|++-+.. ++++.|. |+ +..|..++||.+-
T Consensus 97 i~~l~~alG~~~~~~~d~~~l-RY-gkIiImtDaD~DG~H--I~~Llltff~~~~p~Li~~G~-vy-ia~p~~~~~~~l~ 170 (187)
T 3k9f_C 97 INTMIYTIGAGVGADFSIEDA-NY-DKIIIMTDADTDGAH--IQTLLLTFFYRYMRPLVEAGH-VY-IALPGEMNADQLW 170 (187)
T ss_dssp HHHHHHHHCSCC--CCCCC-C-CC-SEEEEECCSSHHHHH--HHHHHHHHHHHTSHHHHHTTC-EE-EECCGGSCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCC-CC-CEEEEEECCCCCCHH--HHHHHHHHHHHHHHHHCCCCC-EE-EECCCCCCHHHHH
T ss_conf 767876406667887876546-76-707998579876221--577999999987498702894-56-7538768988999
No 25
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:66-137)
Probab=76.62 E-value=3 Score=21.39 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=32.9
Q ss_pred HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf 455420599734523201210034654100001671688897077858885010014
Q gi|254780834|r 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~ 226 (648)
+..|.+.|++++.-.+.|......+|. ++ .++|.+|..|++||.--|-=+
T Consensus 13 y~~L~~RgiteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~ 62 (72)
T 1nui_A 13 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD 62 (72)
T ss_dssp CCCBGGGTBCHHHHHHHTEEEEEETTE-EE------EEEEEECTTSCEEEEEEECTT
T ss_pred HHHHHHCCCCHHHHHHCEEEEEECCCC-EE------EEEEEECCCCCEEEEEEECCC
T ss_conf 335757789989963155999964992-47------998656799988645762045
No 26
>>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} (A:1-74)
Probab=75.63 E-value=3.5 Score=20.69 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=33.2
Q ss_pred HHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCC
Q ss_conf 455420599734523201210034654100001671688897077858885010014
Q gi|254780834|r 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 170 ~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~ 226 (648)
+..|...|++++.-.+.|..+...+|. ++ .++|.+|..|++|+.--|-=+
T Consensus 15 y~~L~aRgIteeTCrK~gY~V~~~~g~-~v------qva~Y~D~~G~lVaQKvR~k~ 64 (74)
T 1q57_A 15 YSALTARGISKETCQKAGYWIAKVDGV-MY------QVADYRDQNGNIVSQKVRDKD 64 (74)
T ss_dssp CCCBTTTTBCHHHHHHHTEEECCBTTB-CE------EEEEEECTTSCEEEEEEEETT
T ss_pred CCHHHHCCCCHHHHHHCCEEEECCCCC-EE------EEEEEECCCCCEEEEEEECCC
T ss_conf 111432998999999749078613992-78------996458979949999975799
No 27
>>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} (A:1-43,A:99-124)
Probab=72.85 E-value=2.6 Score=21.94 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=16.6
Q ss_pred EC-CCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 34-58888587879817897467136888
Q gi|254780834|r 42 CC-PFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 42 ~c-Pfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
.| ||-++-- .-..+.|+|+|-+||.
T Consensus 3 FcsPFtGeyy---~n~~e~GvYvC~~Cg~ 28 (69)
T 2kao_A 3 FCSFFGGEVF---QNHFEPGVYVCAKCSY 28 (69)
T ss_dssp CCCCCCSCTT---TTCCCCCEEEESSSCC
T ss_pred CCCCCCCCHH---CCCCCCEEEEECCCCC
T ss_conf 4346557210---2889985999479996
No 28
>>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics, phosphoprotein phosphatase; 3.30A {Arabidopsis thaliana} (A:)
Probab=70.16 E-value=3 Score=21.31 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=42.3
Q ss_pred EEECCCCCCCCCCEEE--------------ECCCC-EEEEC-CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7534588885878798--------------17897-46713-6888878989989885999799999999981
Q gi|254780834|r 40 WACCPFHDEKTPSFHC--------------NDSKG-FYYCF-SCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 40 ~~~cPfh~ektpsf~v--------------~~~~~-~~~cf-~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
.-.-|+-+..+|+... .+.+. .-||- |+|.+|-++-++|...|+++.+|+..+..+-
T Consensus 60 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~RS~~via~~m~~~g~s~~~A~~~v~~~R 132 (151)
T 1xri_A 60 LFQFGIEGNKEPFVNIPDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSIFDEYQRFA 132 (151)
T ss_dssp EEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSSSSSHHHHHHHHHHHHTTBCHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 5346742343432001099999999999716699888776899507899999999994999999999999976
No 29
>>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3gb8_A (A:558-768)
Probab=66.73 E-value=7.6 Score=17.63 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=62.2
Q ss_pred CCHHHHHHCCCHHHHHHHHHHC------------CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 8888997203668899886414------------9927999999985302331457999999999885417998999999
Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVES------------LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 (648)
Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A------------~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~y 424 (648)
.||+.-|+.+...+|..+.+++ .|+++-+++.+..-...-.+..+..+...+-.++..+++...+..|
T Consensus 19 ~d~~~~Vqe~A~~Al~~iae~~~~~~~~~~~~~~~p~l~~ii~~l~~~~~~l~~~~~~~~~e~i~~i~~~v~~~~~~~~~ 98 (211)
T 3gjx_A 19 HETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHL 98 (211)
T ss_dssp TCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 18988999999999999999999998641403547899999999888875279999999999999999806746568999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999988765
Q gi|254780834|r 425 SQAIRDRLQQLF 436 (648)
Q Consensus 425 l~~la~~L~~~~ 436 (648)
+..+-..+....
T Consensus 99 ~~~lm~~l~~~~ 110 (211)
T 3gjx_A 99 IEKYMLLPNQVW 110 (211)
T ss_dssp HHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999998889999
No 30
>>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanococcus jannaschii} (A:76-301)
Probab=64.70 E-value=6.3 Score=18.40 Aligned_cols=95 Identities=20% Similarity=0.189 Sum_probs=52.5
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCC----C-HHHHHC--CCCHHHHHHHHHC-CCEEEEEECCCCCC-HHHHH--HHHHHH
Q ss_conf 787089971438899987435542----1-134321--3662678988512-68189961788662-25777--888888
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQN----V-VSSLGT--ALTEYQLRLLWKL-SPRIVLCFDGDDPG-LRAAY--KAIDLV 338 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n----~-va~~Gt--alt~~~~~~l~r~-~~~vvl~fDgD~AG-~kAa~--Ra~e~~ 338 (648)
..+.+++||=..=.-.|.+.++.. . |-.-|- ..|..=++.|.+- .-.++.+.|+|.+| ...+. +..-..
T Consensus 46 ~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kGyPd~~tr~~l~~L~~~~~~p~~~~~D~Dp~G~~~I~~~y~~gs~~ 125 (226)
T 1d3y_A 46 DADFILAIETSGMFARLNAERFWDKHNCILVSLKGVPARATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGSGK 125 (226)
T ss_dssp CCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSCCHHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC----
T ss_pred CCCEEEEEEEHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCC
T ss_conf 46689999632089999864755225566872788896899999999866219987999758861089999999961122
Q ss_pred HHHHHCCCCEEEEEC-CCCCCHHHHHHCC
Q ss_conf 777536973067525-7888888997203
Q gi|254780834|r 339 LCHLIPGNRVNFVLL-SRGEDPDSFIRCY 366 (648)
Q Consensus 339 l~~l~~g~~v~vv~L-P~G~DPDe~ir~~ 366 (648)
... ....+.+-.| |-|.+|+++.+..
T Consensus 126 ~~~--~~~~~~~p~l~~~g~~~~~~~~~~ 152 (226)
T 1d3y_A 126 AIH--LADKLSIPAARLIGVTPQDIIDYD 152 (226)
T ss_dssp -------CTTCCTTCEEEESCHHHHHHTT
T ss_pred CCC--CCCCCCCCCCEECCCCHHHHHHCC
T ss_conf 321--121234777779047799974015
No 31
>>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} (A:67-175)
Probab=64.64 E-value=8.2 Score=17.32 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=55.9
Q ss_pred CCCCEEEEECCHHHHHHHHHCCCCCCH-HHHHC------CCCHHHHH---HHHHC--CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 678708997143889998743554211-34321------36626789---88512--68189961788662257778888
Q gi|254780834|r 269 NSSSFIILVEGYMDVLSLCQAGVQNVV-SSLGT------ALTEYQLR---LLWKL--SPRIVLCFDGDDPGLRAAYKAID 336 (648)
Q Consensus 269 ~~~~~~i~vEGy~Dvi~l~~~G~~n~v-a~~Gt------alt~~~~~---~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e 336 (648)
+..+.+.|||-.-|++++-+.|+-+.+ =.||. ..+++++. ++.|. .++|||++...--|+--|.=..+
T Consensus 11 Rd~~~lcVVE~~~Di~~iE~s~~y~G~YhVL~g~isp~~gi~p~~l~~~~L~~r~~~i~EvIlA~s~t~EGe~Ta~yi~~ 90 (109)
T 1vdd_A 11 RDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQR 90 (109)
T ss_dssp SCTTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEECHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 77526999956899899985122221042305744734488852011256677624776799982698650899999999
Q ss_pred HHHHHHHCCCCEEEEECCCCC
Q ss_conf 887775369730675257888
Q gi|254780834|r 337 LVLCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 337 ~~l~~l~~g~~v~vv~LP~G~ 357 (648)
+ -....++|-.|-.|.
T Consensus 91 ~-----lk~~~ikvtrlA~Gi 106 (109)
T 1vdd_A 91 L-----LEPLGAAISRIAYGV 106 (109)
T ss_dssp H-----HTTSSCEEEECCBCB
T ss_pred H-----HHHCCCEEEEECCCC
T ss_conf 8-----423496187602268
No 32
>>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol phosphatase, hydrolase; 2.30A {Mitsuokella multacida} (A:349-420,A:490-629)
Probab=63.19 E-value=8.6 Score=17.11 Aligned_cols=90 Identities=12% Similarity=0.043 Sum_probs=52.8
Q ss_pred HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE----------C-C-CCEEEE-CCCC
Q ss_conf 8999998748--88887--541222101588777775575345888858787981----------7-8-974671-3688
Q gi|254780834|r 6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN----------D-S-KGFYYC-FSCH 68 (648)
Q Consensus 6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~----------~-~-~~~~~c-f~c~ 68 (648)
..+..|++++ +|+.| =-+.-..++.|-. | --.|+-+...|+...- + + +=..|| -|.|
T Consensus 52 ~~~~~~~~~~~~~~~~~dlr~e~e~~~~~gi~-----y-~~i~~~D~~~P~~e~i~~~v~~i~~~~~~~~VlVHC~aG~G 125 (212)
T 3f41_A 52 AMLPVLKQQAKGPIYIMDLRQEQQLVEKNGLH-----Y-YRIAATDHIWPSAANIDEFINFTRTMPANAWLHFHCQAGAG 125 (212)
T ss_dssp HHHHHHHHHCCSCEEEEEEECHHHHHHHTTCE-----E-EEEEECTTSCCCHHHHHHHHHHHHHSCTTCEEEEECSSSSH
T ss_pred HHHHHHCCCCCCCEEEEECCCHHHHHHCCCCE-----E-EEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99998443789848999888799997368963-----8-98436767798878999999999738898559998899987
Q ss_pred CCCCHHHHH-H-HHCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 887898998-9-88599979999999998188587
Q gi|254780834|r 69 VKGDHLSFL-S-ALLGCSFIESVQRLAAIAGVPLP 101 (648)
Q Consensus 69 ~~gd~~~f~-~-~~~~~~f~ea~~~la~~~gi~~~ 101 (648)
..|-++... | +..++++.||+..+...-+.-++
T Consensus 126 RTgtvia~yli~~~~~~s~~eai~~ir~~R~~~~~ 160 (212)
T 3f41_A 126 RTTAYMAMYDMMKNPDVSLGDILSRQYLLGGNYVA 160 (212)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 89899999998747771278999999885530222
No 33
>>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus} (A:)
Probab=62.73 E-value=4.6 Score=19.60 Aligned_cols=24 Identities=8% Similarity=-0.190 Sum_probs=12.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 681899617886622577788888
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDL 337 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~ 337 (648)
.+.+++.-..+.-|+-+++=++.+
T Consensus 112 ~~~~v~VHC~~G~gRSgt~i~a~l 135 (169)
T 1yn9_A 112 PGMLVGVHCTHGINRTGYMVCRYL 135 (169)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 998599996047785699999999
No 34
>>3iac_A Glucuronate isomerase; IDP02065, structural genomics, center for structural genomics of infectious diseases, csgid; 2.22A {Salmonella typhimurium} (A:28-49,A:143-237)
Probab=62.15 E-value=9 Score=16.96 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=13.6
Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 898859997999999999818858
Q gi|254780834|r 77 LSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 77 ~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
+|+.++-+|.+-|..|++.+|+++
T Consensus 73 al~i~~~~f~~yv~kL~e~sg~~I 96 (117)
T 3iac_A 73 VFKIELDGFVDYLRKLEAAADVSI 96 (117)
T ss_dssp HHCTTSTTHHHHHHHHHHHHTCCC
T ss_pred HCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 026561659999999999859886
No 35
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:88-175)
Probab=61.81 E-value=5.3 Score=19.07 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.9
Q ss_pred EEEEECCCCEEEEECCCCC
Q ss_conf 8897077858885010014
Q gi|254780834|r 208 FPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 208 fPi~~~~g~~i~f~gR~l~ 226 (648)
=||.|..|+|||+.|-=+-
T Consensus 50 SPIin~~G~VvGLYGNGv~ 68 (88)
T 2vbc_A 50 SPIINKKGKVIGLYGNGVV 68 (88)
T ss_dssp CEEECSSSSEEEEEECCCC
T ss_pred CCCCCCCCCEEEEEEEEEE
T ss_conf 8738899968998601788
No 36
>>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens} (A:)
Probab=60.65 E-value=5.9 Score=18.66 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=45.1
Q ss_pred CEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 557534588885878798------------17897-46713-6888878-9899898859997999999999818
Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG 97 (648)
Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g 97 (648)
-..-..|+++..+|+..- ...+. .-||- |+|.+|- +.-++|...++++.+|++.+.++-.
T Consensus 57 i~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~VlVHC~~G~~Rsg~~~~~~Lm~~~~~~~~~a~~~ir~~R~ 131 (151)
T 2img_A 57 LTLHRLRIPDFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLVKERGLAAGDAIAEIRRLRP 131 (151)
T ss_dssp SEEEECCCCTTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHST
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 599955642689979999999999999988449819998278876479999999998619899999999998788
No 37
>>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens} (A:1-147)
Probab=60.38 E-value=6 Score=18.59 Aligned_cols=36 Identities=11% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4671-36888878-989989885999799999999981
Q gi|254780834|r 61 FYYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 61 ~~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
.-|| -|.|.+|- ++-++|...++++.||++.+-.+-
T Consensus 107 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~R 144 (147)
T 2wgp_A 107 LVHCAAGVSRSATLCIAYLMKFHNVCLLEAYNWVKARR 144 (147)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 98887656508999999999983999999999999979
No 38
>>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus} (A:)
Probab=60.05 E-value=7.6 Score=17.63 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=44.8
Q ss_pred HHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEE------------ECCCC-EEEEC-CCCCCCCHH-HHHHHHCCCCHH
Q ss_conf 4122210158877777557534588885878798------------17897-46713-688887898-998988599979
Q gi|254780834|r 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC------------NDSKG-FYYCF-SCHVKGDHL-SFLSALLGCSFI 86 (648)
Q Consensus 22 ~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v------------~~~~~-~~~cf-~c~~~gd~~-~f~~~~~~~~f~ 86 (648)
.+.-.....+- .|..+.++.+...|.... ...+. .-||- |.+.+|-++ -++|...|+++.
T Consensus 46 ~e~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yLm~~~~~~~~ 120 (164)
T 2hcm_A 46 RQQPGPRAPGV-----AELRVPVFDDPAEDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTAYLMRHRGHSLD 120 (164)
T ss_dssp SSCCCCCCTTC-----EEEECCCCSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHHHHHHHSCCCHH
T ss_pred CCCCCCCCCCC-----EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHCCCHH
T ss_conf 25664568886-----5999705788435431117999999988875133079984577860799999999998696999
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999981885
Q gi|254780834|r 87 ESVQRLAAIAGVP 99 (648)
Q Consensus 87 ea~~~la~~~gi~ 99 (648)
||++.+..+-..-
T Consensus 121 eAl~~v~~~r~~~ 133 (164)
T 2hcm_A 121 RAFQMVKSARPVA 133 (164)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999989977
No 39
>>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} (A:154-389)
Probab=60.05 E-value=6.4 Score=18.31 Aligned_cols=98 Identities=15% Similarity=0.017 Sum_probs=54.6
Q ss_pred CCEEEEECCHHHHHHHHHCCCC---CCHHHHHC----CCCHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8708997143889998743554---21134321----366267898851268-189961788662257778888887775
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQ---NVVSSLGT----ALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKAIDLVLCHL 342 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~---n~va~~Gt----alt~~~~~~l~r~~~-~vvl~fDgD~AG~kAa~Ra~e~~l~~l 342 (648)
...+++||=..=.-.|.+.++. +++...|- .-|..=++.|.+-.. .++.+.|.|..|..=+..-........
T Consensus 49 ~~~VlvVEn~~~F~~L~~~~~~~~~~~ilI~~~G~p~~~tr~ll~~L~~~~~~~i~~~gD~Dp~Gl~I~~~~~~~~~~~~ 128 (236)
T 2zbk_A 49 AEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGSISLS 128 (236)
T ss_dssp CSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHHHHHHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCSCC--
T ss_pred CCEEEEEECCHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 66899992523899998616343367468956888987999999999753288779996688138899999974133223
Q ss_pred HCCCCEEEEEC-CCCCCHHHHHHCCCH
Q ss_conf 36973067525-788888899720366
Q gi|254780834|r 343 IPGNRVNFVLL-SRGEDPDSFIRCYGK 368 (648)
Q Consensus 343 ~~g~~v~vv~L-P~G~DPDe~ir~~G~ 368 (648)
-..-.+.+-.+ |-|+||.++.+....
T Consensus 129 ~~~~~~~~p~l~~~g~~~~~~~~~~~~ 155 (236)
T 2zbk_A 129 YESERLATPDAKFLGVSMGDIFGNSRK 155 (236)
T ss_dssp ---CCCSCSSCEECCCCHHHHHCCSSS
T ss_pred CCCCCCCCCCCEEECCCHHHHHHCCCC
T ss_conf 101246688508931659997412567
No 40
>>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} (A:1-39,A:149-206,A:316-372)
Probab=58.79 E-value=5.9 Score=18.60 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.1
Q ss_pred HHHHHCCCCHHHHCCCCCCC
Q ss_conf 99985068853510124422
Q gi|254780834|r 142 YYLDERGIDSHAIEMFKLGY 161 (648)
Q Consensus 142 ~yl~~Rg~~~~~~~~f~lG~ 161 (648)
.||.++|++--.+++..++.
T Consensus 19 ~~l~~~g~~v~~~e~~~~~~ 38 (154)
T 2uzz_A 19 YYATRAGLNVLMTDAHMPPH 38 (154)
T ss_dssp HHHHHTTCCEEEECSSCSSS
T ss_pred HHHHHCCCCEEEEECCCCCC
T ss_conf 99997899589993899985
No 41
>>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} (A:)
Probab=58.50 E-value=2.6 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.8
Q ss_pred EECCCCCCCCH
Q ss_conf 71368888789
Q gi|254780834|r 63 YCFSCHVKGDH 73 (648)
Q Consensus 63 ~cf~c~~~gd~ 73 (648)
-||+||+.|.+
T Consensus 4 vcfscgktghi 14 (26)
T 1dsq_A 4 VCFSCGKTGHI 14 (26)
T ss_dssp BCTTTCCBSSC
T ss_pred EEEECCCCCCC
T ss_conf 77756876651
No 42
>>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA; 1.67A {Homo sapiens} (A:1-128)
Probab=57.73 E-value=6.4 Score=18.29 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=28.1
Q ss_pred EEEECC-CCCCC-CHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 467136-88887-8989989885999799999999981
Q gi|254780834|r 61 FYYCFS-CHVKG-DHLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 61 ~~~cf~-c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
+.||-+ .|.+| =++-++|..+|+++.+|++.+..+-
T Consensus 89 lVHC~~G~~RS~~i~~ayLm~~~~~s~~~A~~~v~~~R 126 (128)
T 2e0t_A 89 LVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR 126 (128)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99844568608999999999860999999999999828
No 43
>>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:1-72)
Probab=56.93 E-value=7.3 Score=17.80 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=18.6
Q ss_pred EEEEEEECCCCEEE----EECCCCCCC
Q ss_conf 68889707785888----501001465
Q gi|254780834|r 206 LIFPIRSSRGQVIA----FGGRTLSKG 228 (648)
Q Consensus 206 i~fPi~~~~g~~i~----f~gR~l~~~ 228 (648)
=+|||.++.|+|+| .|||++.+-
T Consensus 9 ~~F~v~~~dG~V~GyA~~vggkv~KP~ 35 (72)
T 1svp_A 9 RLFDVKNEDGDVIGHALAMEGKVMKPL 35 (72)
T ss_dssp SEEEEECTTSCEEEEEEEETTEEEEET
T ss_pred CCCCCCCCCCCEEEEEEEECCEEECCC
T ss_conf 656533247836788899747640232
No 44
>>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA; 1.67A {Escherichia coli} (X:1-32,X:89-156)
Probab=56.85 E-value=11 Score=16.26 Aligned_cols=85 Identities=22% Similarity=0.251 Sum_probs=55.9
Q ss_pred CEEEEECCHHHHHHHH-HCCCCCCH-HHHHCCCCHHHHHHHHHC---CCEEEEEECCCCCCHHHHHHHHHHHHHHHHC-C
Q ss_conf 7089971438899987-43554211-343213662678988512---6818996178866225777888888777536-9
Q gi|254780834|r 272 SFIILVEGYMDVLSLC-QAGVQNVV-SSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP-G 345 (648)
Q Consensus 272 ~~~i~vEGy~Dvi~l~-~~G~~n~v-a~~Gtalt~~~~~~l~r~---~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~-g 345 (648)
+.+++||...-+-... ..|-..|| .+.| ...|+..|+++ +++||+|-|.|.=|..=++..++.+ .. +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~kk~l~~Ikkl~k~ad~IIiATD~DREGE~Ia~eI~~~~----~~~~ 75 (100)
T 1mw9_X 3 KALVIVESPAKAKTINKYLGSDYVVKSSVG---KEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVI----GGDD 75 (100)
T ss_dssp CEEEEESCHHHHHHHHTTSCTTEEEEECCS---CHHHHHHHHHHHHTCSEEEECCCSSHHHHHHHHHHHHHH----CSCG
T ss_pred CEEEEECCHHHHHHHHHHHCCCCEEEECCC---HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHH----CCCC
T ss_conf 839998989999999998299989995467---799999999998459999988898733539999999996----6899
Q ss_pred CCEEEEECCCCCCHHHHHH
Q ss_conf 7306752578888889972
Q gi|254780834|r 346 NRVNFVLLSRGEDPDSFIR 364 (648)
Q Consensus 346 ~~v~vv~LP~G~DPDe~ir 364 (648)
..++=+.+ ....|++..+
T Consensus 76 k~vkRl~f-sslT~~~I~~ 93 (100)
T 1mw9_X 76 ARYSRVVF-NEITKNAIRQ 93 (100)
T ss_dssp GGEEECCC-SSCSHHHHHH
T ss_pred CCEEEEEE-CCCCHHHHHH
T ss_conf 86599996-6689999999
No 45
>>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} (B:)
Probab=55.74 E-value=7.1 Score=17.88 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=14.6
Q ss_pred EEEECCCCEEEEECCCC
Q ss_conf 89707785888501001
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648)
||.|..|+|||+.|--+
T Consensus 123 PIin~~G~VVGLYGNGv 139 (172)
T 2fp7_B 123 PIVDKNGDVIGLYGNGV 139 (172)
T ss_dssp EEECTTSCEEEESCCEE
T ss_pred CEECCCCCEEEEECCEE
T ss_conf 63745896999853549
No 46
>>2q01_A Uronate isomerase; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics; 2.34A {Caulobacter crescentus CB15} (A:35-55,A:154-246)
Probab=55.06 E-value=11 Score=16.03 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=11.6
Q ss_pred HHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 98859997999999999818858
Q gi|254780834|r 78 SALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 78 ~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
|+.++-+|.+-|+.|++.+|+++
T Consensus 71 l~i~~~~f~~yi~kL~~~sg~~I 93 (114)
T 2q01_A 71 IDFEDERSPRAFERFAETSGQDV 93 (114)
T ss_dssp TCTTCTTHHHHHHHHHHHHTSCT
T ss_pred CCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 26677107999999999709886
No 47
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:478-588)
Probab=54.76 E-value=11 Score=15.99 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=60.4
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 888888997203668899886414--992799999998530233145799999999988541799899999999999998
Q gi|254780834|r 355 RGEDPDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 (648)
Q Consensus 355 ~G~DPDe~ir~~G~eaf~~ll~~A--~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L 432 (648)
.=.|||..+|.....++..+...- ....+.++..+.+...-+++.-|..+..-+..++..+++.......+..+...+
T Consensus 11 ~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~i~~~l~~~l 90 (111)
T 1b3u_A 11 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLT 90 (111)
T ss_dssp TTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_conf 86499878999999999999998596878999999999886999879999999999999987080758999999999976
Q ss_pred HH
Q ss_conf 87
Q gi|254780834|r 433 QQ 434 (648)
Q Consensus 433 ~~ 434 (648)
..
T Consensus 91 ~d 92 (111)
T 1b3u_A 91 QD 92 (111)
T ss_dssp TC
T ss_pred CC
T ss_conf 79
No 48
>>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (J:)
Probab=54.58 E-value=12 Score=15.97 Aligned_cols=30 Identities=37% Similarity=0.575 Sum_probs=17.2
Q ss_pred EECCCCC-CCCHH-HHHHHHCC--CCHHHHHHHH
Q ss_conf 7136888-87898-99898859--9979999999
Q gi|254780834|r 63 YCFSCHV-KGDHL-SFLSALLG--CSFIESVQRL 92 (648)
Q Consensus 63 ~cf~c~~-~gd~~-~f~~~~~~--~~f~ea~~~l 92 (648)
.||+||+ =||.+ .|....+. .+-.+|+-.|
T Consensus 6 RCFTCGkvig~~we~y~~~~~~ge~~~~~~LD~L 39 (70)
T 1twf_J 6 RCFSCGKVVGDKWESYLNLLQEDELDEGTALSRL 39 (70)
T ss_dssp BCTTTCCBCTTCHHHHHHHHHTSCCCHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 6578986818889999999970798788999984
No 49
>>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 2i6o_A* 2dxp_A* 2i6p_A* (A:)
Probab=52.77 E-value=7.2 Score=17.83 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=28.4
Q ss_pred EEEEC-CCCCCCCHH-HHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 46713-688887898-99898859997999999999818858
Q gi|254780834|r 61 FYYCF-SCHVKGDHL-SFLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 61 ~~~cf-~c~~~gd~~-~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
.-||- |+|.+|-++ -++|...+++..+|++.+-.+=..-+
T Consensus 93 lVHC~~G~gRSg~~~~~yl~~~~~~~~~~a~~~lr~~R~~~i 134 (161)
T 2i6j_A 93 LVHCVGGIGRTGTILASYLILTEGLEVESAIDEVRLVRPGAV 134 (161)
T ss_dssp EEECSSSSHHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCS
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 999724767069999999999827999999999998689998
No 50
>>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens} (A:)
Probab=51.58 E-value=13 Score=15.59 Aligned_cols=63 Identities=5% Similarity=-0.103 Sum_probs=41.6
Q ss_pred CEEEECCCCCCCCCCEEE------------ECCC-CEEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 557534588885878798------------1789-746713-6888878-9899898859997999999999818858
Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSK-GFYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~-~~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
.|..++.+-++.+|.+.- ...+ -.-||. |-|.+|- |+-++|..+++++.||+..+..+-....
T Consensus 51 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~RS~~~v~aYLm~~~~~~~~~A~~~v~~~R~~~~ 128 (211)
T 2g6z_A 51 HYKWIPVEDSHTADISSHFQEAIDFIDCVREKGGKVLVHSEAGISRSPTICMAYLMKTKQFRLKEAFDYIKQRRSMVS 128 (211)
T ss_dssp EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 699985266856899999999998656777337518998788787309999999998629999999999999899668
No 51
>>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... (A:154-258)
Probab=51.53 E-value=13 Score=15.59 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCEEEEE---ECCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHH
Q ss_conf 6818996---17886622577788888877753697-30675257888888
Q gi|254780834|r 314 SPRIVLC---FDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLLSRGEDPD 360 (648)
Q Consensus 314 ~~~vvl~---fDgD~AG~kAa~Ra~e~~l~~l~~g~-~v~vv~LP~G~DPD 360 (648)
.+.|++. .=||++|+|=.-+|.+.++..++... .+.++.|..+...|
T Consensus 53 G~~v~lRF~~~TGDAmGmNMvtkat~~~~~~i~~~~p~~~~~~lsGN~ctD 103 (105)
T 2r4f_A 53 GRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTD 103 (105)
T ss_dssp TTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCC
T ss_pred CCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf 766999999722777876799999999999999868876056322552565
No 52
>>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A (A:89-295)
Probab=51.24 E-value=13 Score=15.55 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=7.1
Q ss_pred HHHHHHHHHCHHH
Q ss_conf 9999999847788
Q gi|254780834|r 485 AALLLTLINHPAI 497 (648)
Q Consensus 485 ~~LL~llI~~P~l 497 (648)
-.+++.++....+
T Consensus 68 Wa~IyY~LR~G~~ 80 (207)
T 2qx5_A 68 WALIFYLLRAGLI 80 (207)
T ss_dssp HHHHHHHHTTTCH
T ss_pred HHHHHHHHHCCCH
T ss_conf 8999999943889
No 53
>>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; NS2B-NS3 protease; 2.75A {Murray valley encephalitis virus} (A:1-231)
Probab=51.09 E-value=9.9 Score=16.57 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=8.1
Q ss_pred HCCCCHHHHCCCCCCCCCC
Q ss_conf 5068853510124422567
Q gi|254780834|r 146 ERGIDSHAIEMFKLGYAPD 164 (648)
Q Consensus 146 ~Rg~~~~~~~~f~lG~ap~ 164 (648)
.||+-.. .+.+.||.-+
T Consensus 81 ~~~l~g~--~q~GvG~~~~ 97 (231)
T 2wv9_A 81 ARGILGR--YQAGVGVMHE 97 (231)
T ss_dssp EECSSCE--EEEEEEEEET
T ss_pred ECCCCCC--CEEEEEEEEC
T ss_conf 3445666--4212799789
No 54
>>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (9:)
Probab=51.06 E-value=9.6 Score=16.67 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=18.3
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||..-..=- -...|+|+|=.||.
T Consensus 36 y~C~fCgk~~vk---R~a~GIW~C~~C~~ 61 (91)
T 1s1i_9 36 YDCSFCGKKTVK---RGAAGIWTCSCCKK 61 (91)
T ss_dssp CCCTTTCSSCCC---EETTTEECCSSSCC
T ss_pred CCCCCCCCCEEE---EEEEEEEECCCCCC
T ss_conf 239899997348---99888868799998
No 55
>>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} (A:1-78,A:595-821)
Probab=50.61 E-value=13 Score=15.47 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=47.5
Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 87089971438899987435542113432136626789885126818996178866225777888888777536973067
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648)
++..+|.-|+--| |..--+|.++|--..-.+.||. | ..|.+|
T Consensus 37 ~~k~~i~~~~PY~---------ng~lH~GH~~~~~~~D~~aR~~------------------r---------m~G~~v-- 78 (305)
T 1ile_A 37 GPRYTVYEGPPTA---------NGLPHVGHAQARSYKDLFPRYK------------------T---------MRGYYA-- 78 (305)
T ss_dssp SCBCCBCCCCCCT---------TSCCCTTHHHHHHHHHHHHHHH------------------H---------HTTCBC--
T ss_pred CCCEEEECCCCCC---------CCCCHHHHHHHHHHHHHHHHHH------------------H---------CCCCCC--
T ss_conf 9988997289887---------8860342778889999999998------------------7---------389987--
Q ss_pred EECCCCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 52578888889972036688998864149
Q gi|254780834|r 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 (648)
Q Consensus 351 v~LP~G~DPDe~ir~~G~eaf~~ll~~A~ 379 (648)
.+-.+.||++++.++|+|+++-.+-.+.
T Consensus 79 -SkGN~v~p~e~i~~yGaD~lR~~ll~~~ 106 (305)
T 1ile_A 79 -SKGNVVDPWDIIRKFGADALRWYIYVSA 106 (305)
T ss_dssp -TTTCCCCHHHHHTTTCHHHHHHHHHHHS
T ss_pred -CCCCCCCHHHHHHHCCCHHHHHHHHHHC
T ss_conf -4788787999987507078889998708
No 56
>>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B (B:)
Probab=50.55 E-value=10 Score=16.44 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=12.2
Q ss_pred EEEECCCCEEEEECCCC
Q ss_conf 89707785888501001
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648)
||.|..|+|||+.|--+
T Consensus 137 PIi~~~G~vVGLYGnGv 153 (185)
T 2ggv_B 137 PIVDKNGDVIGLYGNGV 153 (185)
T ss_dssp EEECTTSCEEEEEEEEE
T ss_pred CEECCCCCEEEEECCEE
T ss_conf 74755983999855749
No 57
>>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A (A:)
Probab=50.55 E-value=8.2 Score=17.30 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=18.4
Q ss_pred EEE-CCCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCC
Q ss_conf 671-36888878-989989885999799999999981885
Q gi|254780834|r 62 YYC-FSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVP 99 (648)
Q Consensus 62 ~~c-f~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~ 99 (648)
-|| -|-|.+|- +.-++|...++++.||++.+..+-.+.
T Consensus 136 VHC~~G~~RS~~i~~ayLm~~~~~~~~~A~~~v~~~R~~~ 175 (205)
T 2pq5_A 136 VHCAMGVSRSATLVLAFLMIYENMTLVEAIQTVQAHRNIC 175 (205)
T ss_dssp EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHTTTSCCC
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 9835666424999999999974989999999999768979
No 58
>>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} (Z:)
Probab=50.31 E-value=9.6 Score=16.67 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=18.4
Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf 5345888858787981-7897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648)
--|||..-.+ |- ...|+|+|=.||.
T Consensus 61 y~CpfCgk~~----vkR~a~GIW~C~~C~~ 86 (116)
T 3cc2_Z 61 HACPNCGEDR----VDRQGTGIWQCSYCDY 86 (116)
T ss_dssp EECSSSCCEE----EEEEETTEEEETTTCC
T ss_pred CCCCCCCCCE----EEEEEEEEEECCCCCC
T ss_conf 4188889970----4778888878588899
No 59
>>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 1mkp_A (A:)
Probab=50.03 E-value=11 Score=16.14 Aligned_cols=40 Identities=8% Similarity=0.051 Sum_probs=28.8
Q ss_pred EEEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 46713-68888789-89989885999799999999981-8858
Q gi|254780834|r 61 FYYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648)
Q Consensus 61 ~~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648)
.-||- |-|.+|-+ .-++|...+++|.+|++.+..+- ++.+
T Consensus 89 lVHC~~G~~RS~~~v~ayL~~~~~~~~~~A~~~v~~~R~~~~~ 131 (155)
T 2hxp_A 89 LVHSLAGVSRSVTVTVAYLMQKLHLSLNDAYDLVKRKKSNISP 131 (155)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHCSCCCC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 9986677881799999999998399799999999998898899
No 60
>>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, microfluidic labcard, PSI-2; 1.70A {Burkholderia pseudomallei STRAIN1710B} PDB: 3cez_A (A:)
Probab=49.52 E-value=12 Score=15.84 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=7.4
Q ss_pred CCCCHHHHCCCCCC
Q ss_conf 06885351012442
Q gi|254780834|r 147 RGIDSHAIEMFKLG 160 (648)
Q Consensus 147 Rg~~~~~~~~f~lG 160 (648)
|-++.+....+.-|
T Consensus 59 ~pftg~y~~~~~~G 72 (164)
T 3cxk_A 59 PPFTGEYTDTEDAG 72 (164)
T ss_dssp CTTCSTTTTCCCSE
T ss_pred CCCCCCCCCCCCCC
T ss_conf 99977675788985
No 61
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:351-477)
Probab=49.38 E-value=14 Score=15.32 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=6.9
Q ss_pred CHHHHHHCCCHHHHHHHH
Q ss_conf 888997203668899886
Q gi|254780834|r 358 DPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 358 DPDe~ir~~G~eaf~~ll 375 (648)
|||..+|......+..+.
T Consensus 24 d~~~~vr~~a~~~l~~l~ 41 (127)
T 1b3u_A 24 DECPEVRLNIISNLDCVN 41 (127)
T ss_dssp CSCHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCC
T ss_conf 001013478887633200
No 62
>>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus} (B:)
Probab=49.26 E-value=11 Score=16.32 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=13.4
Q ss_pred EEEECCCCEEEEECCCC
Q ss_conf 89707785888501001
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTL 225 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l 225 (648)
||.|..|+|||+.|--+
T Consensus 142 PIi~~~G~vVGLYGnGv 158 (198)
T 3e90_B 142 PIVDKNGDVIGLYGNGV 158 (198)
T ss_dssp EEECTTCCEEEECCCEE
T ss_pred CEECCCCCEEEEECCEE
T ss_conf 64745896999853668
No 63
>>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} (A:)
Probab=48.36 E-value=10 Score=16.37 Aligned_cols=82 Identities=10% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CEEEEECCCC-CCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 3067525788-888899720366889988641499279999999853023314579999999998854179989999999
Q gi|254780834|r 347 RVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 (648)
Q Consensus 347 ~v~vv~LP~G-~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl 425 (648)
..++...|.= -|-||.--.||.. -+.---|-+|-....+.+ ..-..+.-...++.+.+..|+|+.+|+...
T Consensus 342 ~A~~~s~P~LeI~~dDV~~sHgAt-------vG~id~e~LFYL~SRGi~-~~~A~~Llv~gF~~~vl~~i~~e~lr~~i~ 413 (435)
T 1vh4_A 342 LAEVDTKPQLEIYADDVKCSHGAT-------VGRIDDEQIFYLRSRGIN-QQDAQQMIIYAFAAELTEALRDEGLKQQVL 413 (435)
T ss_dssp TCEEEEEEEEEECCSSEEEEEEEE-------EECCCHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CCEEEECCEEEEECCCEEEEEEEE-------CCCCCHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 841665623899639726994021-------467898999999876999-999999999998999998698599999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999988765
Q gi|254780834|r 426 QAIRDRLQQLF 436 (648)
Q Consensus 426 ~~la~~L~~~~ 436 (648)
+.+.++|....
T Consensus 414 ~~i~~~l~~~~ 424 (435)
T 1vh4_A 414 ARIGQRLPGGA 424 (435)
T ss_dssp HHHHTTSTTC-
T ss_pred HHHHHHHHCCC
T ss_conf 99998611422
No 64
>>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N (N:)
Probab=48.01 E-value=14 Score=15.16 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=18.8
Q ss_pred EECCCCC-CCCHH-HHHHHH-CCCCHHHHHHHHH
Q ss_conf 7136888-87898-998988-5999799999999
Q gi|254780834|r 63 YCFSCHV-KGDHL-SFLSAL-LGCSFIESVQRLA 93 (648)
Q Consensus 63 ~cf~c~~-~gd~~-~f~~~~-~~~~f~ea~~~la 93 (648)
.||+||+ =||.+ .|+... +|.+-.+|+-.|.
T Consensus 6 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg 39 (66)
T 2waq_N 6 RCFTCGSLIADKWQPFITRVNAGENPGKVLDDLG 39 (66)
T ss_dssp SCTTTCCCCGGGHHHHHHHHTTTCCHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 6577860479989999999876999899999869
No 65
>>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (Z:)
Probab=47.99 E-value=11 Score=16.14 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=18.5
Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf 5345888858787981-7897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648)
-.|||..-.+ |- ...|+|+|=+||.
T Consensus 28 y~C~fCgk~~----vkR~~~GIW~C~~C~~ 53 (83)
T 1vq8_Z 28 HACPNCGEDR----VDRQGTGIWQCSYCDY 53 (83)
T ss_dssp EECSSSCCEE----EEEEETTEEEETTTCC
T ss_pred CCCCCCCCCC----EEEEEEEEEECCCCCC
T ss_conf 5198989971----2888888878899999
No 66
>>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A* (A:)
Probab=46.99 E-value=15 Score=15.04 Aligned_cols=61 Identities=5% Similarity=0.022 Sum_probs=37.0
Q ss_pred EEECCCCCCCCCCE--------------EEECCCC-EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 75345888858787--------------9817897-46713-6888878-9899898859997999999999818858
Q gi|254780834|r 40 WACCPFHDEKTPSF--------------HCNDSKG-FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 40 ~~~cPfh~ektpsf--------------~v~~~~~-~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
.-.+|+.+..+|.. .-...+. .-||- |=|.+|- ++-++|...++++.+|+..+..+-.+.+
T Consensus 83 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~vlVHC~~G~~RS~~vv~aylm~~~~~~~~~A~~~v~~~r~~~~ 160 (183)
T 3f81_A 83 YLGIKANDTQEFNLSAYFERAADFIDQALAQKNGRVLVHCREGYSRSPTLVIAYLMMRQKMDVKSALSIVRQNREIGP 160 (183)
T ss_dssp EEECCCCCSTTSCGGGGHHHHHHHHHHHHHSTTCCEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 997316877148799999999999877530477239998077777409999999998309899999999996798998
No 67
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:205-263)
Probab=46.51 E-value=15 Score=14.98 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=33.4
Q ss_pred CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC
Q ss_conf 6267898851268--1899617886622-57778888887775--3697306752578
Q gi|254780834|r 303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR 355 (648)
Q Consensus 303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~ 355 (648)
|..||-.|-||+. .|+++...|..-- -+.++...-.|.-. ..|..++++.||.
T Consensus 1 TDGHID~larFv~p~~vl~~~~~d~~d~~y~~~~~~~~~L~~~tda~Gr~~~i~~lP~ 58 (59)
T 1zbr_A 1 TDGHIDTLARFVDTRTIVYVRSEDPSDEHYSDLTAXEQELKELRRPDGQPYRLVPLPX 58 (59)
T ss_dssp SSSCGGGSEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC
T ss_pred CCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 6665123589807995688624787651567999999999986431487434798247
No 68
>>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A* (A:39-82,A:130-154)
Probab=46.36 E-value=7.4 Score=17.73 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=11.1
Q ss_pred ECCCCEEEECCCCC
Q ss_conf 17897467136888
Q gi|254780834|r 56 NDSKGFYYCFSCHV 69 (648)
Q Consensus 56 ~~~~~~~~cf~c~~ 69 (648)
+.++|+|+|-+||.
T Consensus 7 ~~e~GvY~C~~Cg~ 20 (69)
T 3hcj_A 7 NKLDGVYTCRLCGL 20 (69)
T ss_dssp SCSSEEEEETTTCC
T ss_pred CCCCCEEEECCCCC
T ss_conf 87773785078996
No 69
>>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase, zinc; NMR {Methanothermobacterthermautotrophicus str} (A:28-79,A:141-151)
Probab=45.32 E-value=8.6 Score=17.12 Aligned_cols=14 Identities=29% Similarity=0.826 Sum_probs=11.7
Q ss_pred ECCCCEEEECCCCC
Q ss_conf 17897467136888
Q gi|254780834|r 56 NDSKGFYYCFSCHV 69 (648)
Q Consensus 56 ~~~~~~~~cf~c~~ 69 (648)
+.++|+|+|=+||.
T Consensus 29 ~~e~G~Y~C~~Cg~ 42 (63)
T 2k8d_A 29 LHDDGIYRCICCGT 42 (63)
T ss_dssp CCSCSEEEETTTTE
T ss_pred CCCCCEEECCCCCC
T ss_conf 87788897228998
No 70
>>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} (A:119-491)
Probab=44.93 E-value=15 Score=14.79 Aligned_cols=14 Identities=14% Similarity=0.335 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999988
Q gi|254780834|r 619 SILHEVHIQIHQIE 632 (648)
Q Consensus 619 ~el~elk~~L~~l~ 632 (648)
+...++..+++.++
T Consensus 32 ~~~~~~~~~~~~~~ 45 (373)
T 1m1j_A 32 RLEVDIDIKIRACK 45 (373)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999
No 71
>>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D (z:1-71)
Probab=44.83 E-value=16 Score=14.78 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=18.2
Q ss_pred ECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 3458888587879817897467136888
Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 42 ~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
.|||..-.+- --...|+|+|=.||.
T Consensus 38 ~CpfCgk~~v---kR~a~GIW~C~~C~~ 62 (71)
T 2zkr_z 38 TCSFCGKTKM---KRRAVGIWHCGSCMK 62 (71)
T ss_dssp CCSSSCSSCE---EEEETTEEEETTTCC
T ss_pred CCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf 1999999746---888888868889999
No 72
>>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} (B:)
Probab=44.60 E-value=13 Score=15.47 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=7.6
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 138 PIin~~G~vVGlygnG 153 (185)
T 2fom_B 138 PIVDKKGKVVGLYGNG 153 (185)
T ss_dssp EEECTTSCEEEETTCE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 6575899799985455
No 73
>>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} (A:272-364)
Probab=43.86 E-value=6.4 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=16.5
Q ss_pred ECCCCCCCCCCEEEECCCCEEEECC
Q ss_conf 3458888587879817897467136
Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKGFYYCFS 66 (648)
Q Consensus 42 ~cPfh~ektpsf~v~~~~~~~~cf~ 66 (648)
-|||||-.| |-|++=-|--|.
T Consensus 3 ~aPfHNGtt----v~peRI~WL~fv 23 (93)
T 3ljn_A 3 ACPYHNGTT----VLPDRVVWLDFV 23 (93)
T ss_dssp TCTTBSSSS----BCGGGCCCCTTS
T ss_pred CCCCCCCCC----CCHHHHCCCCHH
T ss_conf 376656775----542320334489
No 74
>>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} (A:221-376)
Probab=43.42 E-value=11 Score=16.16 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=33.4
Q ss_pred CCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 35210110817888864331000023567870899714388999874355421134321366267898851268
Q gi|254780834|r 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 (648)
Q Consensus 242 f~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~ 315 (648)
+.|+..+.|++.+|..||.. -|+.+|-|.+ -..|+++-|..-|+.|..|-..|-|++-
T Consensus 50 ~~~eEa~~~FYmlRNLIRRN---------------D~~l~DdiRf-LLsIPsvkaLAh~ait~~~~NELlRLAl 107 (156)
T 2aja_A 50 VTKSECLQGFYXLRNLIRRN---------------DEVLLDDIRF-LLSIPGIKALAPTATIPGDANELLRLAL 107 (156)
T ss_dssp SSHHHHHHHHHHHHHHHHHC---------------CGGGHHHHHH-HHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred HHCCCCCCCCCCHHHHHHHC---------------CCCHHHHHHH-HHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 84654213776316999850---------------5786999999-9864677549999988999988999999
No 75
>>3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:1-60,A:240-367)
Probab=42.89 E-value=11 Score=16.25 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=34.9
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 885999799999999981885877682036777889999999999999999973267775789999850688535
Q gi|254780834|r 79 ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 (648)
Q Consensus 79 ~~~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~ 153 (648)
+.+|-=-+|.+..||.+.||++|..+...-.. .+... .... +...|. -..+...+++.++|+.-+.
T Consensus 14 HldGs~~~~t~~~la~~~~~~lp~~~~~~~~~------~~~~~-~~~~-l~~~l~-~~d~~~~~~l~e~~i~ie~ 79 (188)
T 3iar_A 14 HLDGSIKPETILYYGRRRGIALPANTAEGLLN------VIGMD-KPLT-LPDFLA-LEDQALYNRLRQENMHFEI 79 (188)
T ss_dssp BGGGSCCHHHHHHHHHHHTCCCSCSSHHHHHH------HHCCS-SCCC-HHHHHG-GGCHHHHHHHHHTTCEEEE
T ss_pred CCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH------HHCCC-CCCC-HHHHHH-CCCHHHHHHHHHHCCCEEE
T ss_conf 88478899999999998399999899999998------84455-7788-999999-6699999999984997898
No 76
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=41.97 E-value=17 Score=14.43 Aligned_cols=52 Identities=17% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99858999999999999998724127989999999999999999999884132676
Q gi|254780834|r 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 (648)
Q Consensus 584 l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~e 639 (648)
+......+..+.+.+.++|.++ ..+....+..+..+++.++..++....-++
T Consensus 16 l~~~~~~l~~~rn~~sk~I~~~----~~~~~~~l~~e~~~lk~~i~~le~~~~~~~ 67 (83)
T 1ses_A 16 LKKRLQEVQTERNQVAKRVPKA----PPEEKEALIARGKALGEEAKRLEEALREKE 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSS----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999997532----515489999999999999999886799998
No 77
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:1-117)
Probab=41.40 E-value=15 Score=15.02 Aligned_cols=66 Identities=6% Similarity=-0.021 Sum_probs=26.7
Q ss_pred CCHHHHHHCCCHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 88889972036688998864149-9279999999853023314579999999998854179989999
Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 (648)
Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A~-~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~ 422 (648)
.|||..+|......+..+...-. ....-.+..+.....-++++-|..+...+..++..++......
T Consensus 20 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~d~~~~vR~~~~~~l~~l~~~~~~~~~~~ 86 (117)
T 1b3u_A 20 RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVH 86 (117)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 5999999999999999999984917449999999999865747999999999999998728756899
No 78
>>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} (A:)
Probab=40.99 E-value=17 Score=14.32 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=20.4
Q ss_pred ECCCCC-CCCCCEEEECC--CCEEEECCCCCCC
Q ss_conf 345888-85878798178--9746713688887
Q gi|254780834|r 42 CCPFHD-EKTPSFHCNDS--KGFYYCFSCHVKG 71 (648)
Q Consensus 42 ~cPfh~-ektpsf~v~~~--~~~~~cf~c~~~g 71 (648)
-|||.+ |++=+..+.-. .+.-+|-.||..-
T Consensus 25 ~CPfCnh~~sV~vkidk~~~~g~i~C~vCg~~~ 57 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEEECCCEE
T ss_conf 399788987599999922798999985078837
No 79
>>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens} (A:)
Probab=40.73 E-value=18 Score=14.28 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=17.0
Q ss_pred EEEC-CCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6713-68888789-89989885999799999999981
Q gi|254780834|r 62 YYCF-SCHVKGDH-LSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 62 ~~cf-~c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
-||- |.|.+|-+ .-++|...++++.+|+..+..+-
T Consensus 102 VHC~~G~~RS~~iv~ayLm~~~~~~~~~A~~~v~~~R 138 (188)
T 2esb_A 102 LHCAAGVSRSAALCLAYLMKYHAMSLLDAHTWTKSCR 138 (188)
T ss_dssp EECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 9813544438999999999971999999999999979
No 80
>>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica} (A:)
Probab=40.61 E-value=18 Score=14.27 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=39.6
Q ss_pred CEEEECCCCCCCCCCEEE------------ECCCCE-EEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 557534588885878798------------178974-67136-8888789-899898859997999999999818
Q gi|254780834|r 38 DYWACCPFHDEKTPSFHC------------NDSKGF-YYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG 97 (648)
Q Consensus 38 ~~~~~cPfh~ektpsf~v------------~~~~~~-~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g 97 (648)
.|.-++|+-+...|.... ...+.. -||.. -|.+|-+ .-++|...++++.||++.+..+-.
T Consensus 55 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~Rp 129 (161)
T 3emu_A 55 DILRLDIVSEEGHQLYDSIPNAIKFIIRSIQRKEGVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGLYP 129 (161)
T ss_dssp EEEEECCCCSSTTHHHHHHHHHHHHHHHHHHTTCEEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 899996478872689999999999754441168537998412242149999999998429999999999999899
No 81
>>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens} (A:)
Probab=40.28 E-value=18 Score=14.23 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=26.8
Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 46713-6888878-989989885999799999999981-8858
Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648)
Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648)
+-||- |=|.+|- |.-|+|..+++++.+|++++..+- ++.+
T Consensus 91 lVHC~~G~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~R~~~~~ 133 (177)
T 2oud_A 91 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP 133 (177)
T ss_dssp EEECSSSSSHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 9984755560699999999998298999999999998996799
No 82
>>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori J99} PDB: 2cmu_A (A:199-265)
Probab=40.21 E-value=18 Score=14.22 Aligned_cols=53 Identities=17% Similarity=0.109 Sum_probs=32.1
Q ss_pred CHHHHHHHHHCCC--EEEEEECCCCCCH-HHHHHHHHHHHHHH--HCCCCEEEEECCC
Q ss_conf 6267898851268--1899617886622-57778888887775--3697306752578
Q gi|254780834|r 303 TEYQLRLLWKLSP--RIVLCFDGDDPGL-RAAYKAIDLVLCHL--IPGNRVNFVLLSR 355 (648)
Q Consensus 303 t~~~~~~l~r~~~--~vvl~fDgD~AG~-kAa~Ra~e~~l~~l--~~g~~v~vv~LP~ 355 (648)
|..||-.|-||+. .|+++...|..-- -+..++..-.|.-. ..|..++|+.||.
T Consensus 1 TDGHID~lArFv~p~~vl~~~~~d~~dp~~~~~~~~~~~L~~~tda~G~~~~ii~lP~ 58 (67)
T 3hvm_A 1 TDSHTDTLARFLDKDTIVYSACEDKNDEHYTALKKMQEELKTFKKLDKTPYKLIPLEI 58 (67)
T ss_dssp SSCCGGGTEEEEETTEEEEEECCCTTSTTHHHHHHHHHHHHHCBCTTSCBCEEEEEEC
T ss_pred CCCCCCCCEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 5677402104447983999971477631489999999999985532115775057628
No 83
>>3e7h_A DNA-directed RNA polymerase subunit beta; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Vibrio cholerae} (A:7-87)
Probab=40.17 E-value=4.8 Score=19.48 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=37.4
Q ss_pred CCCCC-EEEEEEEECCCCEEEEECCCCCCCC-------CCEECCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 00167-1688897077858885010014655-------3001038767653521011081788886433
Q gi|254780834|r 200 DRFRN-RLIFPIRSSRGQVIAFGGRTLSKGE-------SVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 (648)
Q Consensus 200 d~Fr~-Ri~fPi~~~~g~~i~f~gR~l~~~~-------~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~ 260 (648)
|||+| |+.|+|.| .|.||.=.||.++... +-|++.=| ...|+|-+.|.+-+..
T Consensus 12 e~~~G~~~~~DIvd-tGeviv~~g~kIT~~~~kkl~~aGi~~i~v~-------~e~l~gk~la~divd~ 72 (81)
T 3e7h_A 12 ERLRGETATFDIEA-DGKVYVEKGRRVTARHIRQLEKDGVNFIEVP-------VEYIVGKVSAKDYVNE 72 (81)
T ss_dssp HHHTTCBCSSCEEE-TTEEEECTTCBCCHHHHHHHHHTTCCEEEEC-------GGGGGTCSCCCTTBCT
T ss_pred HHHCCCCCCCCCCC-CCEEEEECCCEECHHHHHHHHHCCCCEEECC-------HHHHCCEEEHHHEECC
T ss_conf 99678764523035-9909993797638999999864768559817-------7893354503002768
No 84
>>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} (A:)
Probab=39.74 E-value=11 Score=16.15 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=11.8
Q ss_pred CCCEEEECCCCCCCCH
Q ss_conf 8974671368888789
Q gi|254780834|r 58 SKGFYYCFSCHVKGDH 73 (648)
Q Consensus 58 ~~~~~~cf~c~~~gd~ 73 (648)
.+..-+||-||+-|-+
T Consensus 3 ~rk~vkCfNCGK~GH~ 18 (29)
T 1nc8_A 3 QRKVIRCWNCGKEGHS 18 (29)
T ss_dssp CCCCCBCTTTSCBSSC
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 6545677527874320
No 85
>>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} (A:1-109,A:335-413)
Probab=39.69 E-value=18 Score=14.28 Aligned_cols=11 Identities=55% Similarity=0.806 Sum_probs=6.0
Q ss_pred EECCCCEEEEE
Q ss_conf 70778588850
Q gi|254780834|r 211 RSSRGQVIAFG 221 (648)
Q Consensus 211 ~~~~g~~i~f~ 221 (648)
....|++-+||
T Consensus 74 ~~~~g~~y~~G 84 (188)
T 1a12_A 74 LSKSGQVYSFG 84 (188)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCEEEEEE
T ss_conf 96699899994
No 86
>>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens} (A:)
Probab=39.66 E-value=18 Score=14.15 Aligned_cols=37 Identities=3% Similarity=0.038 Sum_probs=28.8
Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 46713-6888878-9899898859997999999999818
Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAG 97 (648)
Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~g 97 (648)
+-||- |.|.+|- +..++|...++++.+|++.+..+-.
T Consensus 94 lVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~rp 132 (154)
T 2r0b_A 94 LVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQERRF 132 (154)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHHST
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 998320013489999999998639899999999999899
No 87
>>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} (A:154-313)
Probab=39.63 E-value=17 Score=14.35 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=7.9
Q ss_pred CCCCHHHHCCCCCCC
Q ss_conf 068853510124422
Q gi|254780834|r 147 RGIDSHAIEMFKLGY 161 (648)
Q Consensus 147 Rg~~~~~~~~f~lG~ 161 (648)
|-++.+-...+.-|.
T Consensus 42 ~pftg~y~~~~~~Gi 56 (160)
T 3e0m_A 42 APFTNAYDQTFEEGI 56 (160)
T ss_dssp CSSSSTTTTCCCSEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 986788766689869
No 88
>>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113)
Probab=39.58 E-value=18 Score=14.14 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999858999999999999998724127989999999999999999999884132
Q gi|254780834|r 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 (648)
Q Consensus 574 ~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Ea 636 (648)
+.....+.-.+......+..+.+.+.++|.+....++. ..++..+..+++.++..++....
T Consensus 33 i~~l~~~~r~~~~~~~~l~~~rn~lsk~i~~~~~~~~e--~~~l~~e~~~lk~~l~~le~~~~ 93 (113)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP--VDELLAKSREIVKRIGELENEVE 93 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC--THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999867997--89999999999999999999999
No 89
>>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens} (A:)
Probab=38.71 E-value=19 Score=14.04 Aligned_cols=44 Identities=5% Similarity=0.146 Sum_probs=30.0
Q ss_pred CCCCE-EEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 78974-6713-6888878-9899898859997999999999818858
Q gi|254780834|r 57 DSKGF-YYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 57 ~~~~~-~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
..+.+ -||- |=+.+|- ++-++|...++++.+|+..+..+-..-.
T Consensus 82 ~~~~VlVHC~~G~~RS~~v~~ayL~~~~~~~~~~A~~~v~~~Rp~~~ 128 (165)
T 1wrm_A 82 RGESCLVHCLAGVSRSVTLVIAYIMTVTDFGWEDALHTVRAGRSCAN 128 (165)
T ss_dssp TTCEEEEECSSSSSHHHHHHHHHHHHTSSCCHHHHHHHHHHHCTTCC
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 34305788334466259999999999808789999999999799789
No 90
>>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, protein structure initiative; 2.30A {Shewanella oneidensis mr-1} (A:146-325)
Probab=38.45 E-value=19 Score=14.01 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=34.5
Q ss_pred CHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH-HHHHCCC--EEEEEE
Q ss_conf 1011081788886433100002356787089971438899987435542113432136626789-8851268--189961
Q gi|254780834|r 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR-LLWKLSP--RIVLCF 321 (648)
Q Consensus 245 ~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~-~l~r~~~--~vvl~f 321 (648)
++.+||.......+.. +.....+.++||+ |+||-..|. .+.++.+ +|++|=
T Consensus 99 grE~F~~~~~~~~l~~-------------------------~~~ls~~D~~aTl-t~~TA~sI~~~~~~~~~~~~v~v~G 152 (180)
T 3cqy_A 99 GRELFNQAWLEQQLSA-------------------------FNQLNEEDIQSTL-LDLTCHSIAQDILKLAQEGELFVCG 152 (180)
T ss_dssp CSSSSSHHHHHHHTTT-------------------------CTTSCHHHHHHHH-HHHHHHHHHHHHHHHCSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHC-------------------------CCCCCCHHHHHHH-HHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 4555445432443201-------------------------2457820255678-8899999875555413567238966
Q ss_pred C
Q ss_conf 7
Q gi|254780834|r 322 D 322 (648)
Q Consensus 322 D 322 (648)
=
T Consensus 153 G 153 (180)
T 3cqy_A 153 G 153 (180)
T ss_dssp G
T ss_pred C
T ss_conf 8
No 91
>>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii} (A:)
Probab=37.90 E-value=17 Score=14.51 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=17.6
Q ss_pred HHHCCCCCCC---CCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 3510124422---567741034554205997345232
Q gi|254780834|r 152 HAIEMFKLGY---APDSRYSLREHLRQKGFSEEKIIE 185 (648)
Q Consensus 152 ~~~~~f~lG~---ap~~~~~l~~~l~~~~~~~~~~~~ 185 (648)
++-.+|+|+| +-.++..|-..+..+|++.+.+++
T Consensus 23 ~vF~~~gi~~~~c~~~~~~tL~~aa~~~gid~~~ll~ 59 (73)
T 2k5e_A 23 GVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILR 59 (73)
T ss_dssp HHHHHTTGGGGGTTTGGGSBHHHHHHHTTCCHHHHHH
T ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999859999798776668299999993989999999
No 92
>>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} (A:)
Probab=37.76 E-value=19 Score=13.92 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=31.5
Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 126818996178866225777888888777536973067525
Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
+..++|+++.|+.++..+|...+++++.. .|-++.++..
T Consensus 2 ~m~k~Ilv~vD~s~~s~~al~~a~~~a~~---~~~~i~~~hv 40 (138)
T 1q77_A 2 NAXKVLLVLTDAYSDCEKAITYAVNFSEK---LGAELDILAV 40 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTT---TCCEEEEEEE
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHH---CCCEEEEEEE
T ss_conf 86789999983999999999999998876---2956999995
No 93
>>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:1-65)
Probab=37.50 E-value=19 Score=13.89 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=18.3
Q ss_pred EEECCCCCCCCCCEEEECCCCEEEECCCCCC
Q ss_conf 7534588885878798178974671368888
Q gi|254780834|r 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 (648)
Q Consensus 40 ~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~ 70 (648)
--.||=..-+. -.+|+.+.-.| ||+|+..
T Consensus 14 H~pCpnCGSSD-a~s~YsDGh~~-CF~C~~~ 42 (65)
T 1nui_A 14 HIPCDNCGSSD-GNSLFSDGHTF-CYVCEKW 42 (65)
T ss_dssp EECCSSSCCSS-CEEEETTSCEE-ETTTCCE
T ss_pred CCCCCCCCCCC-CCEEECCCCEE-ECCCCCC
T ss_conf 58999897999-98795399889-7889985
No 94
>>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* (A:1-103)
Probab=37.48 E-value=15 Score=14.83 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=9.5
Q ss_pred HHHHCCCCCCHHHHHC
Q ss_conf 9874355421134321
Q gi|254780834|r 285 SLCQAGVQNVVSSLGT 300 (648)
Q Consensus 285 ~l~~~G~~n~va~~Gt 300 (648)
.|++.|++.||||+=|
T Consensus 68 ~L~d~Gl~~VvAPl~t 83 (103)
T 3i1a_A 68 LLHDSGIKEIIFPIHT 83 (103)
T ss_dssp HHHHTTCCSSCCCCCC
T ss_pred HHHHCCCCCCCCEEEC
T ss_conf 9996499888824762
No 95
>>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} (A:1-112)
Probab=37.35 E-value=19 Score=13.87 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85899999999999999872412798999999999999999999988413267
Q gi|254780834|r 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 (648)
Q Consensus 586 ~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~~Eal~ 638 (648)
.....+..+.+.+.+++.+....++. ...+..+..+++.++..++.+...+
T Consensus 44 ~~~~~l~~~~n~~sk~i~~~k~~~~e--~~~l~~e~~~lk~~l~~le~~~~~~ 94 (112)
T 2dq3_A 44 KRLEALRSERNKLSKEIGKLKREGKD--TTEIQNRVKELKEEIDRLEEELRKV 94 (112)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGSSCSC--TTTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998767888--9999999999999999889999999
No 96
>>1z0j_B FYVE-finger-containing RAB5 effector protein rabenosyn-5, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} (B:)
Probab=37.34 E-value=19 Score=13.87 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998724127989999999999999999999884
Q gi|254780834|r 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648)
Q Consensus 589 ~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648)
..|..++..++.-|.++...+.-|....|-.-|++++.++.+++.
T Consensus 12 dPL~eQ~~~i~~yI~qAk~~~rfdEV~tL~~NL~EL~~E~~~~q~ 56 (59)
T 1z0j_B 12 ELLLQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQKG 56 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999886899963267407546999999999999999998637
No 97
>>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405} (A:)
Probab=37.08 E-value=20 Score=13.84 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf 2567741034554205997345232
Q gi|254780834|r 161 YAPDSRYSLREHLRQKGFSEEKIIE 185 (648)
Q Consensus 161 ~ap~~~~~l~~~l~~~~~~~~~~~~ 185 (648)
+.-.++..|...+..+|++.+.+++
T Consensus 33 c~~~~~~tL~~a~~~~gid~~~ll~ 57 (76)
T 2k53_A 33 CPSSMGESIEDACAVHGIDADKLVK 57 (76)
T ss_dssp SCCCCCSBHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHCCCCHHHHHH
T ss_conf 8766777599999891999999999
No 98
>>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* (A:)
Probab=36.93 E-value=20 Score=13.82 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
Q ss_conf 89998743554211343213662678988512681899617886622577788888877753697306752578888889
Q gi|254780834|r 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 (648)
Q Consensus 282 Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe 361 (648)
.++......+..++--++..++......+-..++.|++..+.|..+.+++.++++.+- ..|..+--+ +-+..||+.
T Consensus 183 ~~~~~~~~~~d~ViiD~~~~~~~~~~~~l~~~ad~viiV~~~~~~~~~~~~~~~~~l~---~~~~~~~gv-vlN~~~~~~ 258 (271)
T 3bfv_A 183 NLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIE---ATGAKLLGV-VLNRMPKDK 258 (271)
T ss_dssp HHHHHHHHHCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHH---TTTCEEEEE-EEEEECC--
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH---HCCCCCEEE-EECCCCCCC
T ss_conf 9998544128889971788654799999999699899995887779999999999999---779982899-975807886
Q ss_pred HH
Q ss_conf 97
Q gi|254780834|r 362 FI 363 (648)
Q Consensus 362 ~i 363 (648)
-.
T Consensus 259 ~~ 260 (271)
T 3bfv_A 259 SA 260 (271)
T ss_dssp --
T ss_pred CC
T ss_conf 76
No 99
>>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} PDB: 3hch_A* 1l1d_A (A:)
Probab=36.84 E-value=16 Score=14.67 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.8
Q ss_pred CCCCHHHHCCCCCC
Q ss_conf 06885351012442
Q gi|254780834|r 147 RGIDSHAIEMFKLG 160 (648)
Q Consensus 147 Rg~~~~~~~~f~lG 160 (648)
|-++.+-...+.-|
T Consensus 29 ~pftg~y~~~~~~G 42 (146)
T 3hcg_A 29 YAFSHEYDHLFKPG 42 (146)
T ss_dssp CTTCSGGGGCCCSE
T ss_pred CCCCCCCCCCCCCC
T ss_conf 99873343446668
No 100
>>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159)
Probab=36.69 E-value=20 Score=13.79 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999858999999999999998724127------989999999999999999999884132676
Q gi|254780834|r 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG------EAEKTAILISILHEVHIQIHQIESQEAMIE 639 (648)
Q Consensus 571 ~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~------d~e~~~~l~~el~elk~~L~~l~~~Eal~e 639 (648)
.+.+.+...+...+......+..+...+.++|......+ +.+....+..+..+++.++..++....-++
T Consensus 31 vd~i~~ld~~~r~~~~~~~~l~~~~n~isk~i~~~~~~~~~~~~~~~~e~~~L~~~~~~lk~~i~~le~~~~~~~ 105 (121)
T 1wle_A 31 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLE 105 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999998567751000268999999999999999999999999999
No 101
>>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} (9:)
Probab=36.68 E-value=15 Score=14.83 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=17.7
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||..-..= --..-|+|+|=+|+.
T Consensus 27 y~C~fCgk~~v---kR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 27 YDCSFCGKKTV---KRGAAGIWTCSCCKK 52 (72)
T ss_dssp BCCSSCCSSCB---SBCSSSCBCCSSSCC
T ss_pred CCCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf 40999999735---898888878899998
No 102
>>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} (A:196-350)
Probab=36.38 E-value=20 Score=13.75 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=34.9
Q ss_pred CCHHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 888899720366889988641499--279999999853023314579999999998854179989999999999999
Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVESLP--LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 (648)
Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~A~~--l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~ 431 (648)
.|||..+|......+..+.....+ +.+.++..+.+...-.+++-|..+..-+..++...++.......+..+.+.
T Consensus 18 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~ 94 (155)
T 1b3u_A 18 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL 94 (155)
T ss_dssp TCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 35572267888866776513798799998878999998751578899999985331000200010133326899998
No 103
>>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} (W:1-61)
Probab=36.32 E-value=19 Score=14.03 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=17.8
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||..-.+- --...|+|+|=.||.
T Consensus 28 y~C~fCgk~~v---kR~a~GIW~C~~C~~ 53 (61)
T 1ffk_W 28 YKCPVCGFPKL---KRASTSIWVCGHCGY 53 (61)
T ss_pred CCCCCCCCCEE---EEEEEEEEECCCCCC
T ss_conf 45999998504---777887897478998
No 104
>>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} (A:289-364)
Probab=35.89 E-value=17 Score=14.44 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=7.2
Q ss_pred CCEEEECCCCEEEEC
Q ss_conf 787981789746713
Q gi|254780834|r 51 PSFHCNDSKGFYYCF 65 (648)
Q Consensus 51 psf~v~~~~~~~~cf 65 (648)
||-+|+...+.|+||
T Consensus 60 aSASV~qGTeLYKv~ 74 (76)
T 3fmc_A 60 ASASVHQGTELYKVX 74 (76)
T ss_dssp SSSEECTTCEEEEEE
T ss_pred CCCCCCCCCEEEEEE
T ss_conf 887337999999986
No 105
>>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} (A:)
Probab=35.19 E-value=21 Score=13.61 Aligned_cols=36 Identities=14% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 681899617886622577788888877753697306752
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~ 352 (648)
.++|+++.|+...+++|..-|++++... |-.+.++.
T Consensus 2 ~~~ILv~vd~s~~s~~al~~a~~~a~~~---~~~i~~l~ 37 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRH---DAKLSIIH 37 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHH---TCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEE
T ss_conf 9829999889989999999999999875---99489999
No 106
>>2f46_A Hypothetical protein; 7380613, DUF442, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.41A {Neisseria meningitidis Z2491} (A:)
Probab=35.17 E-value=21 Score=13.60 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=9.2
Q ss_pred CCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 789899898859997999999999
Q gi|254780834|r 71 GDHLSFLSALLGCSFIESVQRLAA 94 (648)
Q Consensus 71 gd~~~f~~~~~~~~f~ea~~~la~ 94 (648)
+-++-.+|.+.|+++.+|++.+..
T Consensus 116 s~lv~~yl~~~g~s~~~A~~~v~~ 139 (156)
T 2f46_A 116 SLLWGFRRAAEGXPVDEIIRRAQA 139 (156)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999839999999999998
No 107
>>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} (A:)
Probab=34.86 E-value=21 Score=13.56 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=51.4
Q ss_pred HHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHH---------HHHHHHHHHHHHHCCC--CEE
Q ss_conf 8999-874355421134321366267898851268189961788662257---------7788888877753697--306
Q gi|254780834|r 282 DVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA---------AYKAIDLVLCHLIPGN--RVN 349 (648)
Q Consensus 282 Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kA---------a~Ra~e~~l~~l~~g~--~v~ 349 (648)
+++. +++.|+...+.|.||-++ +....+....+.|.+.+||....... .+++++. +.+.|. .++
T Consensus 23 ~i~~~~~~~g~~~~l~Tng~~~~-~~~~~~~~~~~~i~isld~~~~~~~~~~~~~~~~~~~~~i~~---l~~~~~~~~i~ 98 (182)
T 3can_A 23 DILKRCGQQGIHRAVDTTLLARK-ETVDEVXRNCELLLIDLKSXDSTVHQTFCDVPNELILKNIRR---VAEADFPYYIR 98 (182)
T ss_dssp HHHHHHHHTTCCEEEECTTCCCH-HHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHH---HHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEEECCCHHH-HHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCEEE
T ss_conf 99999987799299972521107-777766520000024322003888887873025788866666---76630231244
Q ss_pred EEECCCCCC-HHHH
Q ss_conf 752578888-8899
Q gi|254780834|r 350 FVLLSRGED-PDSF 362 (648)
Q Consensus 350 vv~LP~G~D-PDe~ 362 (648)
++..|.-.| ++++
T Consensus 99 ~~~~~~~~d~~~ei 112 (182)
T 3can_A 99 IPLIEGVNADEKNI 112 (182)
T ss_dssp EEECBTTTCSHHHH
T ss_pred EECCCCCCCCHHHH
T ss_conf 30227975999999
No 108
>>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus} (A:)
Probab=34.69 E-value=16 Score=14.75 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=13.1
Q ss_pred CCCCCEEEECCCCEEEECCCCCC
Q ss_conf 85878798178974671368888
Q gi|254780834|r 48 EKTPSFHCNDSKGFYYCFSCHVK 70 (648)
Q Consensus 48 ektpsf~v~~~~~~~~cf~c~~~ 70 (648)
-|-|.+.+...-|-|||-||-+.
T Consensus 6 ~kcpnl~ivtssgef~c~gcv~~ 28 (109)
T 3f62_A 6 TKCPNLDIVTSSGEFHCSGCVEH 28 (109)
T ss_dssp CCSCCCEEEEETTEEEEEEEECS
T ss_pred CCCCCCCEEECCCCEEECHHHHH
T ss_conf 33898326813682886315542
No 109
>>2iye_A Copper-transporting ATPase; hydrolase, P-type ATPase, CPX-ATPase, COPB, heavy metal translocation; 2.6A {Sulfolobus solfataricus} (A:1-39,A:139-263)
Probab=34.38 E-value=21 Score=13.50 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=60.6
Q ss_pred CCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHH--HHHCCCCCCHHHHHCCCCHHH-HHHHH---
Q ss_conf 676535210110817888864331000023567870899714388999--874355421134321366267-89885---
Q gi|254780834|r 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALTEYQ-LRLLW--- 311 (648)
Q Consensus 238 eT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~--l~~~G~~n~va~~Gtalt~~~-~~~l~--- 311 (648)
+|.+|+|.-+|=+.-.+.+..++.+ -..+|+......+.. +.+.||.++.|-+ +++| .+.+.
T Consensus 29 ~~~~~~~~~~~P~a~e~I~~L~~~G--------i~v~IiTGD~~~~a~~ia~~lgI~~v~a~v----~p~~K~~iv~~L~ 96 (164)
T 2iye_A 29 DTIIFDKTGTLPNLKDYLEKLKNEG--------LKIIILSGDKEDKVKELSKELNIQEYYSNL----SPEDKVRIIEKLK 96 (164)
T ss_dssp CEEEEESTTTTSCCHHHHHHHHGGG--------CEEEEECSSCHHHHHHHHHHHTCSEEECSC----CHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCHHHHHHHHHHHCC--------CCEEEECCCCCCCCHHHHHHHCHHHHHHCC----CHHHHHHHHHHHH
T ss_conf 9999918852312999999999759--------927982387421101479985302534023----5788988884552
Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCCHHH-HHHCCCHHHHHHHHHHCCCH
Q ss_conf 1268189961788662257778888887775369730675257-8888889-97203668899886414992
Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS-FIRCYGKTAFEKLIVESLPL 381 (648)
Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP-~G~DPDe-~ir~~G~eaf~~ll~~A~~l 381 (648)
+....|.++=||- .--++++.++.. +-+-.-+ .-+.-.| .+.......+..++..++-.
T Consensus 97 ~~g~~Va~VGDg~--ND~~aL~~AdVG---------Ia~~~~~~~a~~aADvvl~~~~l~~i~~~i~~sR~~ 157 (164)
T 2iye_A 97 QNGNKVLMIGDGV--NDAAALALADVS---------VAMGNGVDISKNVADIILVSNDIGTLLGLIKNRKRL 157 (164)
T ss_dssp HTTCCEEEEECST--TTHHHHHHSSEE---------EEESTTTCSSCCCSSEEETTCCHHHHHHHHTCC---
T ss_pred CCCCEEEEEECCC--CHHHHHHHCCEE---------EECCCCCHHHHHHCCEEEECCCHHHHHHHHHHHHHH
T ss_conf 2560589994231--046688648799---------983673088998579999579989999999999999
No 110
>>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} (A:)
Probab=34.06 E-value=22 Score=13.46 Aligned_cols=25 Identities=20% Similarity=0.038 Sum_probs=17.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 6818996178866225777888888
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLV 338 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~ 338 (648)
...+|+.-..+..|+-|++=++..+
T Consensus 132 ~~~~vvVHC~~G~gRsgtf~~~~~l 156 (212)
T 1fpz_A 132 NYRKTLIHSYGGLGRSCLVAACLLL 156 (212)
T ss_dssp TTCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 6990898899999668999999999
No 111
>>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* (A:206-382)
Probab=33.40 E-value=22 Score=13.38 Aligned_cols=12 Identities=0% Similarity=-0.045 Sum_probs=4.6
Q ss_pred CCCHHHHHHHHH
Q ss_conf 799889999999
Q gi|254780834|r 510 YDNNELQKLWSF 521 (648)
Q Consensus 510 f~~~~~~~L~~~ 521 (648)
+.++.++.+...
T Consensus 36 ~~~~~~~~l~~~ 47 (177)
T 3kb9_A 36 RKHPAYRRAALL 47 (177)
T ss_dssp HTSHHHHHHHHH
T ss_pred HHCCHHHHHHHH
T ss_conf 608258999999
No 112
>>2etv_A Iron(III) ABC transporter, periplasmic iron- binding protein, putative; TM0189, structural genomics; HET: MLY; 1.70A {Thermotoga maritima MSB8} (A:176-346)
Probab=33.40 E-value=20 Score=13.73 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=27.5
Q ss_pred HHHHCCCCCCHHHHHCC---CCHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 98743554211343213---6626789885126818996178866
Q gi|254780834|r 285 SLCQAGVQNVVSSLGTA---LTEYQLRLLWKLSPRIVLCFDGDDP 326 (648)
Q Consensus 285 ~l~~~G~~n~va~~Gta---lt~~~~~~l~r~~~~vvl~fDgD~A 326 (648)
.+..+|..|+.+..|+. ++.|++ -...+.|||..+++..
T Consensus 27 ~i~~aGg~Nv~~~~~~~~~~is~E~i---l~~~PDvIi~~~~~~~ 68 (171)
T 2etv_A 27 PFVVLHARNVVDELGEGHXFIDPEXL---LVWNPEYIFIDENGLS 68 (171)
T ss_dssp HHHHTTCEETTGGGCSEEEECCTHHH---HHHCCSEEEEEGGGHH
T ss_pred HHHHHCCCCHHHHCCCCCCCCCHHHH---HHHCCCEEEEECCCCC
T ss_conf 99981880202214678741589899---7609899999579854
No 113
>>1juh_A Quercetin 2,3-dioxygenase; copper, cupin, glycoprotein, beta sandwich, oxidoreductase; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} (A:1-23,A:222-350)
Probab=33.36 E-value=15 Score=14.94 Aligned_cols=10 Identities=50% Similarity=0.521 Sum_probs=7.4
Q ss_pred CCCCEECCCC
Q ss_conf 5530010387
Q gi|254780834|r 228 GESVKYLNSP 237 (648)
Q Consensus 228 ~~~~KYlNSp 237 (648)
-.+||||||.
T Consensus 22 ~~GPKYLNs~ 31 (152)
T 1juh_A 22 YSGPKYLNSQ 31 (152)
T ss_dssp TCSCEEEECT
T ss_pred CCCCHHHCCC
T ss_conf 8851100256
No 114
>>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} (A:260-564)
Probab=33.05 E-value=22 Score=13.34 Aligned_cols=123 Identities=14% Similarity=0.182 Sum_probs=67.4
Q ss_pred HHHCCCCHHHHCCCCCCCCCCCC-CHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEC
Q ss_conf 98506885351012442256774-10345542059973452320121003465410000167168889707785888501
Q gi|254780834|r 144 LDERGIDSHAIEMFKLGYAPDSR-YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 (648)
Q Consensus 144 l~~Rg~~~~~~~~f~lG~ap~~~-~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~g 222 (648)
+.++.|++..|--|+-|-|--+- +.|..++...|.+.++..+- | =+.|.+|=+. .+
T Consensus 18 i~g~~L~d~~iv~~GAGsAgigia~ll~~~~~~~gls~e~a~~~-------------------i--~lvD~~Gli~--~~ 74 (305)
T 1pj3_A 18 VISKPISEHKILFLGAGEAALGIANLIVXSXVENGLSEQEAQKK-------------------I--WXFDKYGLLV--KG 74 (305)
T ss_dssp HHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHT-------------------E--EEEETTEECB--TT
T ss_pred HHCCCHHHCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHCCCC-------------------E--EEECCCCEEE--CC
T ss_conf 85897234468996354589999999999530137853323243-------------------8--9974606070--68
Q ss_pred CC-CCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCC
Q ss_conf 00-14655300103876765352101108178888643310000235678708997143889998743554211343213
Q gi|254780834|r 223 RT-LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 (648)
Q Consensus 223 R~-l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gta 301 (648)
|- +.+..++.|- +.. ...-.-.-.|||...+.-+--.++..|.+
T Consensus 75 r~~~~~~~k~~~~---------~~~--------------------------~~~~~~~L~evv~~vkptvLiG~S~~~g~ 119 (305)
T 1pj3_A 75 RKAKIDSYQEPFT---------HSA--------------------------PESIPDTFEDAVNILKPSTIIGVAGAGRL 119 (305)
T ss_dssp CSSCCCTTTGGGC---------BCC--------------------------CSSCCSSHHHHHHHHCCSEEEECCCSSCC
T ss_pred CCCCCHHHHHHHH---------HHC--------------------------CCCCCCCHHHHHHHCCCCEEEEECCCCCC
T ss_conf 7542688899998---------602--------------------------23433203456650477469974576666
Q ss_pred CCHHHHHHHHHCCCE-EEEEECCC
Q ss_conf 662678988512681-89961788
Q gi|254780834|r 302 LTEYQLRLLWKLSPR-IVLCFDGD 324 (648)
Q Consensus 302 lt~~~~~~l~r~~~~-vvl~fDgD 324 (648)
||++.++.+..++++ |||.+=+=
T Consensus 120 Fte~vi~~Ma~~~~rPIIFaLSNP 143 (305)
T 1pj3_A 120 FTPDVIRAXASINERPVIFALSNP 143 (305)
T ss_dssp SCHHHHHHHHHHCSSCEEEECCSS
T ss_pred CCHHHHHHHHHCCCCCEEEECCCC
T ss_conf 898999999854899779980798
No 115
>>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} (B:)
Probab=32.91 E-value=22 Score=13.32 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 799999999981885-87768203677788999999999999999997326
Q gi|254780834|r 85 FIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 (648)
Q Consensus 85 f~ea~~~la~~~gi~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (648)
-+|.|+..|+-.||. ++. +....-...-.-++-++.+.|.+|.++--++
T Consensus 8 ~~esik~iAeS~Gi~~l~d-e~a~~LA~DVeyRi~eiiQeA~KFMrhskR~ 57 (70)
T 1taf_B 8 SAESMKVIAESIGVGSLSD-DAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70)
T ss_dssp CHHHHHHHHHHTTCCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7889999999859888899-9999989999999999999999999974667
No 116
>>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens} (A:)
Probab=32.80 E-value=22 Score=13.30 Aligned_cols=44 Identities=2% Similarity=-0.091 Sum_probs=29.1
Q ss_pred CCCCE-EEECC-CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 78974-67136-888878-989989885999799999999981-8858
Q gi|254780834|r 57 DSKGF-YYCFS-CHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648)
Q Consensus 57 ~~~~~-~~cf~-c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648)
..+.+ -||-. =|.+|- +.-++|...|+++.+|++.+-.+- ++.+
T Consensus 80 ~~~~VlVHC~~G~~Rs~~vv~ayLm~~~~~~~~~A~~~v~~~R~~~~~ 127 (145)
T 2nt2_A 80 HGSKCLVHSKMGVSRSASTVIAYAMKEYGWNLDRAYDYVKERRTVTKP 127 (145)
T ss_dssp TTCEEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHHCTTCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 473289980102360799999999998199999999999997996789
No 117
>>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B (B:1-45)
Probab=32.78 E-value=17 Score=14.39 Aligned_cols=15 Identities=33% Similarity=0.820 Sum_probs=10.7
Q ss_pred EEECCCCEEE--ECCCC
Q ss_conf 9817897467--13688
Q gi|254780834|r 54 HCNDSKGFYY--CFSCH 68 (648)
Q Consensus 54 ~v~~~~~~~~--cf~c~ 68 (648)
.||...+.|| ||.|-
T Consensus 27 iVNSnGel~HeqCFVCa 43 (45)
T 3f6q_B 27 IVNSNGELYHEQCFVCA 43 (45)
T ss_dssp EEEETTEEEETTTSSCT
T ss_pred EEEECCCEECCCCCCCC
T ss_conf 99979846763248864
No 118
>>3cxj_A Uncharacterized protein; PSI-II, structural genomics, protein structure initiative; 2.80A {Methanothermobacter thermautotrophicusstr} (A:)
Probab=32.53 E-value=23 Score=13.27 Aligned_cols=55 Identities=13% Similarity=0.032 Sum_probs=35.2
Q ss_pred HHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
Q ss_conf 134321366267898851268189961788662257778888887775369730675257888888997
Q gi|254780834|r 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 (648)
Q Consensus 295 va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~i 363 (648)
+-+||++++++|.+.|..+..+ =++.-+. ++...++ -+.+.|.++|++++|..+.
T Consensus 54 ii~~gi~is~~H~~~L~~l~~e----------eR~efl~--~i~~~Ll--~m~vdf~~~pp~~~p~~i~ 108 (165)
T 3cxj_A 54 LIACATSVSPEHQAGIRALSXE----------KRTEFIW--KVRFTLN--RFGVDFQLDHPENVLNSYL 108 (165)
T ss_dssp EEEEEEECCTTHHHHHHHSCHH----------HHHHHHH--HHHHHHT--TTTCEEEEECTTSCCCEEE
T ss_pred EEEEEEEECHHHHHHHHHCCHH----------HHHHHHH--HHHHHHH--HCCCCEEEECCCCCCCEEE
T ss_conf 9999988889999999858988----------8999999--9999999--6089789848834686589
No 119
>>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=32.31 E-value=23 Score=13.24 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=18.7
Q ss_pred EECCCCC-CCCHHHHHHH-H-CCCCHHHHHHHHH
Q ss_conf 7136888-8789899898-8-5999799999999
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA-L-LGCSFIESVQRLA 93 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~~-~-~~~~f~ea~~~la 93 (648)
.||+||+ =||.+.=+.+ . ++.+-.+|+-.|.
T Consensus 5 RCFTCGkvig~~we~y~~~~~~g~~~~~aLD~Lg 38 (55)
T 1ef4_A 5 RCLSCGKPVSAYFNEYQRRVADGEDPKDVLDDLG 38 (55)
T ss_dssp SCSCTTSCCHHHHHHHHHHHHHTCCHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 6089976889999999999986999789998849
No 120
>>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* (A:219-379)
Probab=32.15 E-value=23 Score=13.22 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCCEEEEEEEE--------------CCCCEEEEECCCCCCC----CCCEECCCCCCCCCCC
Q ss_conf 0016716888970--------------7785888501001465----5300103876765352
Q gi|254780834|r 200 DRFRNRLIFPIRS--------------SRGQVIAFGGRTLSKG----ESVKYLNSPETILFHK 244 (648)
Q Consensus 200 d~Fr~Ri~fPi~~--------------~~g~~i~f~gR~l~~~----~~~KYlNSpeT~if~K 244 (648)
..-.|||++.-+. ..||-|.|.||.+... ..-+|++-|++.+--|
T Consensus 18 ~~a~gRIivs~faSni~RIq~i~~~A~~~~Rkv~~~Grsl~~~~~~a~~lg~l~~p~~~i~~~ 80 (161)
T 3bk2_A 18 GRAPGRVFVTTFASHIHRIQSVIWAAEKYGRKVAXEGRSXLKFSRIALELGYLKVKDRLYTLE 80 (161)
T ss_dssp HHCSSCEEEECCTTCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHHHHHTTSCCCSSCCBCTG
T ss_pred HHCCCCEEEEECCCHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHCCCCCCCCCEECHH
T ss_conf 970697798522323889999999999849903532312334345676527645764321415
No 121
>>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens} (A:)
Probab=32.14 E-value=23 Score=13.22 Aligned_cols=59 Identities=8% Similarity=0.143 Sum_probs=38.2
Q ss_pred EEEECCCCCCCCCCEEE-------------ECCCC-EEEECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 57534588885878798-------------17897-467136-8888789-899898859997999999999818
Q gi|254780834|r 39 YWACCPFHDEKTPSFHC-------------NDSKG-FYYCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIAG 97 (648)
Q Consensus 39 ~~~~cPfh~ektpsf~v-------------~~~~~-~~~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~g 97 (648)
..-.||..+..++.... ...+. ..||-+ =|.+|-+ +-++|...++++.+|++.+..+-.
T Consensus 52 ~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RSgtv~~ayLm~~~~~~~~~A~~~v~~~Rp 126 (160)
T 1yz4_A 52 TYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATRP 126 (160)
T ss_dssp EEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTCT
T ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 035413345866799999999999888753010478762331246249999999999849689999999999799
No 122
>>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} (A:)
Probab=32.13 E-value=23 Score=13.22 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=6.7
Q ss_pred CCCCCCCEEEEEEE
Q ss_conf 00001671688897
Q gi|254780834|r 198 SYDRFRNRLIFPIR 211 (648)
Q Consensus 198 ~~d~Fr~Ri~fPi~ 211 (648)
.||.=+.|+++-++
T Consensus 90 ~ynPe~eRLVW~l~ 103 (505)
T 1dzl_A 90 FYNPDTQRLVWACV 103 (505)
T ss_dssp TSCTTTEEEEEEEE
T ss_pred CCCCCCCEEEEEEE
T ss_conf 76987656777888
No 123
>>2vqp_A Matrix protein; viral protein, peripheral membrane protein, RSV, virion, envelope protein; HET: GOL; 1.60A {Human respiratory syncytial virus A2} (A:125-257)
Probab=31.85 E-value=15 Score=14.93 Aligned_cols=18 Identities=22% Similarity=0.360 Sum_probs=7.8
Q ss_pred CCEEEECCCCC-CCCCCEE
Q ss_conf 75575345888-8587879
Q gi|254780834|r 37 GDYWACCPFHD-EKTPSFH 54 (648)
Q Consensus 37 ~~~~~~cPfh~-ektpsf~ 54 (648)
++.++||-||| |+.-+++
T Consensus 18 HdlIAlCdF~n~~~~~~v~ 36 (133)
T 2vqp_A 18 HDIIALCEFENIVTSKKVI 36 (133)
T ss_dssp EEEEEEEEEEETTTCCEEE
T ss_pred HHHEECCCCCHHHCCCEEE
T ss_conf 2220101540222186241
No 124
>>2pt0_A MYO-inositol hexaphosphate phosphohydrolase; PTP, protein tyrosine phosphatase, phytase, P-loop, cysteine-sulfonic acid, oxidized thiol.; 1.70A {Selenomonas ruminantium} (A:58-129,A:199-340)
Probab=31.46 E-value=23 Score=13.13 Aligned_cols=89 Identities=7% Similarity=-0.114 Sum_probs=57.2
Q ss_pred HHHHHHHHHC--CHHHH--HHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEE-----------CCCC-EEEEC-CCC
Q ss_conf 8999998748--88887--541222101588777775575345888858787981-----------7897-46713-688
Q gi|254780834|r 6 DFIKDLLIHI--PISNL--IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN-----------DSKG-FYYCF-SCH 68 (648)
Q Consensus 6 ~~i~~i~~~~--~i~~v--v~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~-----------~~~~-~~~cf-~c~ 68 (648)
..+..|++++ +|+.| =-+-=-.++.|- -.-.|||-+...|+...- .++. ..||. |+|
T Consensus 52 ~~~~~~~~~~~~~~~~~dlr~e~~~~e~~gi------~y~~ip~~D~~~P~~e~l~~~v~~I~~~~~~~~VlVHC~aG~G 125 (214)
T 2pt0_A 52 NVAAKLREKTAGPIYDVDLRQEQEVAEAAGM------RYFRIAATDHVWPTPENIDRFLAFYRTLPQDAWLHFHXEAGVG 125 (214)
T ss_dssp HHHHHHHTTCSSCEEEEEEECHHHHHHHTTC------EEEEEEECTTSCCCHHHHHHHHHHHHTCCTTCEEEEECSSSSH
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHCCC------EEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 9999985347998799988889999985697------4999335888898989999999999738999708998189996
Q ss_pred CCCCHHH-HHHHHCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8878989-9898859997999999999818858
Q gi|254780834|r 69 VKGDHLS-FLSALLGCSFIESVQRLAAIAGVPL 100 (648)
Q Consensus 69 ~~gd~~~-f~~~~~~~~f~ea~~~la~~~gi~~ 100 (648)
..|-++. ++|...+.+..||+..+...-..-+
T Consensus 126 RTgtiia~yLm~~~~~~~~eai~~lr~~R~~~v 158 (214)
T 2pt0_A 126 RTTAFMVMTDMLKNPSVSLKDILYRQHEIGGFY 158 (214)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 899999999998676999999999998751765
No 125
>>3pfk_A Phosphofructokinase; transferase(phosphotransferase); 2.40A {Bacillus stearothermophilus} (A:1-131,A:251-305)
Probab=31.29 E-value=24 Score=13.11 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=22.7
Q ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 818-9961788662257778888887775369730675
Q gi|254780834|r 315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 (648)
Q Consensus 315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv 351 (648)
++| |+.--||.+|.||+.|++=. .....|.+|.-+
T Consensus 2 KrI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~ev~G~ 37 (186)
T 3pfk_A 2 KRIGVLTSGGDSPGMNAAIRSVVR--KAIYHGVEVYGV 37 (186)
T ss_dssp CEEEEEEESSCCTTHHHHHHHHHH--HHHHTTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEEE
T ss_conf 889998768876899999999999--999779999998
No 126
>>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:64-149)
Probab=31.16 E-value=24 Score=13.09 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=10.9
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|+|||.
T Consensus 41 pi~DN~GrVVaI 52 (86)
T 1vcp_A 41 PIFDNKGRVVAI 52 (86)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 117688879999
No 127
>>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120)
Probab=31.15 E-value=24 Score=13.09 Aligned_cols=93 Identities=12% Similarity=0.202 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 8851112899999999986543332025689-988999999999999985899999999999999872412798999999
Q gi|254780834|r 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 (648)
Q Consensus 539 ~~L~~~~l~elL~~L~~~~~~~~~~~~~~e~-~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l 617 (648)
..+.-..+..-+.++.........|...... ....-...+...+.. ...+.....++...+.-+....|.+....+
T Consensus 23 ~~l~l~~~~~rl~eLe~~l~~p~fw~d~~~a~~i~ke~~~L~~~v~~---~~~l~~~~~dl~~~~el~~ee~D~e~~e~~ 99 (120)
T 1gqe_A 23 GYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDT---LDQXKQGLEDVSGLLELAVEADDEETFNEA 99 (120)
T ss_dssp HHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 66798999999999999860972454999999999999999999999---999999999899999987502246799999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998841
Q gi|254780834|r 618 ISILHEVHIQIHQIESQ 634 (648)
Q Consensus 618 ~~el~elk~~L~~l~~~ 634 (648)
..++.++.+++..++-.
T Consensus 100 ~~el~~l~~~l~~lE~~ 116 (120)
T 1gqe_A 100 VAELDALEEKLAQLEFR 116 (120)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999874
No 128
>>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} (A:104-157)
Probab=31.08 E-value=24 Score=13.08 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=21.3
Q ss_pred ECCCCCCCCCCEEEECCCC--EEEECCCCCCCCH
Q ss_conf 3458888587879817897--4671368888789
Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKG--FYYCFSCHVKGDH 73 (648)
Q Consensus 42 ~cPfh~ektpsf~v~~~~~--~~~cf~c~~~gd~ 73 (648)
|||...-----+.|+..++ .-.|=.||..|++
T Consensus 2 LC~~C~NPET~~~i~~k~~~I~~~C~ACG~~s~v 35 (54)
T 2e9h_A 2 LCPECENPETDLHVNPKKQTIGNSCKACGYRGML 35 (54)
T ss_dssp SCTTTCCSCCEEEEETTTTEEEEECSSSCCEEEC
T ss_pred ECCCCCCCCEEEEEECCCCEEEEEHHHCCCCCCC
T ss_conf 9899999865999935875898573236998863
No 129
>>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} (A:1-70,A:158-346)
Probab=30.76 E-value=16 Score=14.70 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=37.1
Q ss_pred EEEEECCHHHHHHHHHCCCCCCHH---HHHCCCCHHHHHHHHHCCCE--E-EEEECCCCCCHHHHHHHH
Q ss_conf 089971438899987435542113---43213662678988512681--8-996178866225777888
Q gi|254780834|r 273 FIILVEGYMDVLSLCQAGVQNVVS---SLGTALTEYQLRLLWKLSPR--I-VLCFDGDDPGLRAAYKAI 335 (648)
Q Consensus 273 ~~i~vEGy~Dvi~l~~~G~~n~va---~~Gtalt~~~~~~l~r~~~~--v-vl~fDgD~AG~kAa~Ra~ 335 (648)
+.|++=|-|||+..-..|.-..=| -.|+|.--+-++.|++...+ | ++++|+-+-|...+...+
T Consensus 60 ~~i~~~~H~D~~~~~~~~~~~~Ga~Dn~sGva~lLelar~l~~~~~~~ti~fv~~~~EE~g~~Gs~~~~ 128 (259)
T 1vho_A 60 GKLAFFAHVDETAFETNGKVVGKALDNRASCGVLVKVLEFLKRYDHPWDVYVVFSVQEETGCLGALTGA 128 (259)
T ss_dssp CEEEEEEECCBCCEEETTEEEETTHHHHHHHHHHHHHHHHHTTCCCSSEEEEEEECTTSSSHHHHHHTT
T ss_pred CCEEEEECCCCEEEEECCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEE
T ss_conf 738999715778997037488623214234788999999987336677742000022102676774210
No 130
>>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} (A:262-345,A:463-553)
Probab=30.69 E-value=14 Score=15.28 Aligned_cols=71 Identities=14% Similarity=0.020 Sum_probs=35.5
Q ss_pred HHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEE
Q ss_conf 89999850688535101244225677410345542059973452320121003465410000167168889707785888
Q gi|254780834|r 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 (648)
Q Consensus 140 a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~ 219 (648)
-+.=|+.||++++.|+.|-+.--+...++.+++ +.+..+. +...|.=..|.|+= +-.. -.+-
T Consensus 31 Ti~glrRRG~~peai~~F~~~~Gvsk~~~~i~~--------~~le~~~--------R~~ld~~a~R~~~V-~~vp-vevr 92 (175)
T 1qtq_A 31 TISGLRRRGYTAASIREFCKRIGVTKQDNTIEM--------ASLESCI--------REDLNENAPRAMAV-HALP-VEIR 92 (175)
T ss_dssp BHHHHHHHTCCHHHHHHHHHHHCCCSSCCCBCH--------HHHHHHH--------HHHHHHHSCEECEE-TCEE-EEEE
T ss_pred CHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCH--------HHHHHHH--------HHHHHHHCCCCEEE-CCEE-EEEE
T ss_conf 189999869987999999999588887774267--------8799999--------97505306543168-7674-6999
Q ss_pred EECCCCCCC
Q ss_conf 501001465
Q gi|254780834|r 220 FGGRTLSKG 228 (648)
Q Consensus 220 f~gR~l~~~ 228 (648)
...+.+...
T Consensus 93 lYd~Lf~~~ 101 (175)
T 1qtq_A 93 LYDRLFSVP 101 (175)
T ss_dssp EECCSBSSS
T ss_pred ECCCCCCCC
T ss_conf 367455668
No 131
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:1-64)
Probab=30.62 E-value=19 Score=13.88 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=10.3
Q ss_pred HHHHHHHHHCCCCHHHHC
Q ss_conf 578999985068853510
Q gi|254780834|r 138 KRLHYYLDERGIDSHAIE 155 (648)
Q Consensus 138 ~~a~~yl~~Rg~~~~~~~ 155 (648)
.+.++||.++|+++++|.
T Consensus 36 ~Ei~~kL~~k~~~e~~i~ 53 (64)
T 3e3v_A 36 KEVEDKLRSLDIHEDYIS 53 (64)
T ss_dssp HHHHTTSGGGTCCHHHHH
T ss_pred HHHHHHHHHCCCCHHHHH
T ss_conf 999999986699999999
No 132
>>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} (A:)
Probab=30.54 E-value=24 Score=13.01 Aligned_cols=30 Identities=20% Similarity=0.586 Sum_probs=22.8
Q ss_pred CEEEECCCCCCCCCCEE----EECCCCEEEECCCCC
Q ss_conf 55753458888587879----817897467136888
Q gi|254780834|r 38 DYWACCPFHDEKTPSFH----CNDSKGFYYCFSCHV 69 (648)
Q Consensus 38 ~~~~~cPfh~ektpsf~----v~~~~~~~~cf~c~~ 69 (648)
.|+ ||..+-+=-++- ++|..+.|+|--|+.
T Consensus 14 ~y~--Cp~C~~~ys~Lda~~Lld~~~~~F~C~~C~~ 47 (62)
T 1vd4_A 14 SFK--CPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp EEE--CSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred CEE--CCCCCCEECHHHHHHHCCCCCCEEEECCCCC
T ss_conf 209--9898899467669871597899197358999
No 133
>>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} (A:84-98,A:399-592)
Probab=29.97 E-value=25 Score=12.93 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 5788888899720366889988641499
Q gi|254780834|r 353 LSRGEDPDSFIRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 353 LP~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648)
+.+..||+++++++|+|+++-++-.+.+
T Consensus 41 ~GN~i~~~e~~~~~g~D~lR~~ll~~~~ 68 (209)
T 1iq0_A 41 NPDHPDKEEAARMVALGAIRFSMVKTEP 68 (209)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHHHHHEEEECCCCCC
T ss_conf 1103445567877615344532103576
No 134
>>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} (A:1-132,A:254-306)
Probab=29.78 E-value=25 Score=12.91 Aligned_cols=34 Identities=35% Similarity=0.453 Sum_probs=17.5
Q ss_pred CEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 818-996178866225777888888777536973067
Q gi|254780834|r 315 PRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 (648)
Q Consensus 315 ~~v-vl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~v 350 (648)
++| |+.--||.+|.||+.|++=. .....|.+|.-
T Consensus 3 krI~IltsGGdaPGlNa~Ir~vv~--~a~~~g~~v~G 37 (185)
T 1pfk_A 3 KKIGVLTSGGDAPGMNAAIRGVVR--SALTEGLEVMG 37 (185)
T ss_dssp CEEEEEECSSCCTTHHHHHHHHHH--HHHHTTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHHHCCCEEEE
T ss_conf 649998658886778999999999--99877999999
No 135
>>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A (A:)
Probab=29.68 E-value=25 Score=12.90 Aligned_cols=36 Identities=22% Similarity=0.485 Sum_probs=22.6
Q ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf 99999999997-3267775789999850688535101
Q gi|254780834|r 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM 156 (648)
Q Consensus 121 ~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~ 156 (648)
.+-|..|-++- ..+..-..-+.||++.||+++-|+.
T Consensus 18 i~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~ 54 (70)
T 2w84_A 18 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDM 54 (70)
T ss_dssp HHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999568212018689999999975999999999
No 136
>>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} (N:141-244)
Probab=29.20 E-value=25 Score=12.89 Aligned_cols=69 Identities=23% Similarity=0.202 Sum_probs=40.8
Q ss_pred HHHHHCCCCCCHHHHHCC--CCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH--HHHHHHCCCCEEEEECCC
Q ss_conf 998743554211343213--662678988512681899617886622577788888--877753697306752578
Q gi|254780834|r 284 LSLCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL--VLCHLIPGNRVNFVLLSR 355 (648)
Q Consensus 284 i~l~~~G~~n~va~~Gta--lt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~--~l~~l~~g~~v~vv~LP~ 355 (648)
-.+-.+|..|+.+..++. .+.--...|..+-+.++|+.+.+.......+..-.. -++..+.| +|..+|.
T Consensus 29 ~l~~~~G~~n~~~~~~~~~~~~~is~E~l~~~~pd~ii~~~~~~~~~~~~l~~~p~~~~l~Avk~~---~V~~i~~ 101 (104)
T 1efd_N 29 EILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAG---RFQRVPA 101 (104)
T ss_dssp HHHHHTTCCBSCCSCCCTTSEEEECGGGGGGCCSCEEEEECSSCHHHHHHHHTSHHHHHCHHHHTT---CEEEECC
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCC---CEEEECC
T ss_conf 999990992434123566787414899996549998999918974789999809402068620189---2899696
No 137
>>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} (A:73-161)
Probab=29.14 E-value=25 Score=12.82 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.9
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|+|||.
T Consensus 41 pi~DN~GkVVaI 52 (89)
T 1svp_A 41 PIMDNSGRVVAI 52 (89)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 117688879999
No 138
>>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} (A:178-264)
Probab=29.10 E-value=25 Score=12.82 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.9
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|+|||.
T Consensus 41 pi~DN~GrVVaI 52 (87)
T 1kxf_A 41 PIMDNSGRVVAI 52 (87)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 525688768999
No 139
>>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} (A:)
Probab=29.09 E-value=25 Score=12.82 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998724127989999999999999999999884
Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648)
Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648)
.|-.++..++.-|.++.+.+.-|...-|-.-|++++.+..+.+.
T Consensus 6 PLlqQi~~Ik~yI~QAk~a~R~DEV~~Le~NLreLq~e~~~qq~ 49 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999833428999999999999999999875
No 140
>>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens} (A:)
Probab=29.03 E-value=25 Score=12.81 Aligned_cols=40 Identities=5% Similarity=0.088 Sum_probs=28.3
Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 46713-6888878-989989885999799999999981-8858
Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648)
Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648)
.-||- |=|.+|- +.-++|...++++.+|++.+..+- ++.+
T Consensus 87 lVHC~~G~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~Rp~~~~ 129 (149)
T 1zzw_A 87 LIHCQAGVSRSATIVIAYLMKHTRMTMTDAYKFVKGKRPIISP 129 (149)
T ss_dssp EEECSSSSSHHHHHHHHHHHHHSCCCHHHHHHHHHHHCTTCCC
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 6685555563599999999998497999999999998997799
No 141
>>3eol_A Isocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3e5b_A (A:349-433)
Probab=28.88 E-value=25 Score=12.79 Aligned_cols=34 Identities=24% Similarity=0.380 Sum_probs=19.1
Q ss_pred EEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHH
Q ss_conf 9971438899987435542113432136626789
Q gi|254780834|r 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 (648)
Q Consensus 275 i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~ 308 (648)
.+==||+|.+.-.--|=..+++.||-+.|++|..
T Consensus 48 ~vGa~y~D~v~~~i~gG~Sst~Amg~stte~QF~ 81 (85)
T 3eol_A 48 EVGTGYFDAVSLAITGGQSSTTAMKESTETAQFK 81 (85)
T ss_dssp ----CHHHHHHHHHCC------------------
T ss_pred HCCCCHHHHHHHHHCCCCHHHHHCCCCCCHHHCC
T ss_conf 1065588989998628830444236996566445
No 142
>>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 2.30A {Leishmania major} (A:)
Probab=28.83 E-value=26 Score=12.78 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=6.8
Q ss_pred EEECCCCEEEEECCCC
Q ss_conf 9707785888501001
Q gi|254780834|r 210 IRSSRGQVIAFGGRTL 225 (648)
Q Consensus 210 i~~~~g~~i~f~gR~l 225 (648)
|....|.++.|.-...
T Consensus 98 I~K~~~~~L~f~c~~~ 113 (203)
T 1yqf_A 98 ITQKNGQTMQADLSIE 113 (203)
T ss_dssp EECTTSCEEEEEEEEE
T ss_pred EEECCCCEEEEEEEEC
T ss_conf 9968998799999964
No 143
>>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} (I:54-122)
Probab=28.51 E-value=26 Score=12.74 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=22.2
Q ss_pred EECCCCCCCCCCEEEEC-------CCCEEEECCCCC
Q ss_conf 53458888587879817-------897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCND-------SKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~-------~~~~~~cf~c~~ 69 (648)
..||-.....-.|...+ ..-||.|-.||.
T Consensus 20 ~~Cp~Cg~~ea~f~q~QtRsaDE~mT~Fy~C~~C~~ 55 (69)
T 1twf_I 20 RECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSH 55 (69)
T ss_dssp CCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCC
T ss_pred CCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCC
T ss_conf 678667998711687444667889739999699999
No 144
>>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:71-157)
Probab=28.34 E-value=26 Score=12.72 Aligned_cols=12 Identities=42% Similarity=0.841 Sum_probs=10.9
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|+|||.
T Consensus 41 pi~DN~GrVVaI 52 (87)
T 1ep5_B 41 PILDNQGRVVAI 52 (87)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 117688869999
No 145
>>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} (A:1-24,A:153-262)
Probab=28.25 E-value=26 Score=12.70 Aligned_cols=23 Identities=13% Similarity=0.232 Sum_probs=17.7
Q ss_pred EEEECCCCEEEEECCCCCCCCCC
Q ss_conf 89707785888501001465530
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTLSKGESV 231 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l~~~~~~ 231 (648)
|+.|..|+|||.....+..+..+
T Consensus 85 Pl~n~~GevVGI~~~~~~~~~~~ 107 (134)
T 1ky9_A 85 ALVNLNGELIGINTAILAPDGGN 107 (134)
T ss_dssp EEECTTSCEEEEEECSSTTSCCC
T ss_pred EEEECCCEEEEEEEEEECCCCCC
T ss_conf 04945888977888777058886
No 146
>>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} (B:)
Probab=28.17 E-value=26 Score=12.69 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999872412798999999999999999999988
Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 (648)
Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~ 632 (648)
.|-.++..++.-|.++...+.-|...-|-.-|++++.++.+.+
T Consensus 24 PLlqQi~~ik~yI~QAk~a~r~dEV~~Le~NLreLq~e~~~qq 66 (69)
T 1z0k_B 24 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0999999999999999981441899999999999999999987
No 147
>>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1} (F:)
Probab=28.17 E-value=23 Score=13.12 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.8
Q ss_pred ECCCC--EEEECC
Q ss_conf 17897--467136
Q gi|254780834|r 56 NDSKG--FYYCFS 66 (648)
Q Consensus 56 ~~~~~--~~~cf~ 66 (648)
+|++. .|.|=|
T Consensus 88 nPe~eRLVW~l~G 100 (495)
T 3iyj_F 88 NPSKERLVWAVIG 100 (495)
T ss_dssp CTTTEEEEEEEEE
T ss_pred CCCCCEEEEEEEE
T ss_conf 9876567778888
No 148
>>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} (A:)
Probab=27.85 E-value=26 Score=12.65 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.2
Q ss_pred EEEEEEEECCCCEEEEECCCCC
Q ss_conf 1688897077858885010014
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~gR~l~ 226 (648)
++.-||+|..|+++|.-+-.++
T Consensus 103 ~~a~PI~~~~G~~iGvv~~~~~ 124 (131)
T 1p0z_A 103 RGKSPIQDATGKVIGIVSVGYT 124 (131)
T ss_dssp EEEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEEEE
T ss_conf 9999679799979999999988
No 149
>>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} (A:258-555)
Probab=27.68 E-value=27 Score=12.62 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEE-EEEECCC
Q ss_conf 38899987435542113432136626789885126818-9961788
Q gi|254780834|r 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI-VLCFDGD 324 (648)
Q Consensus 280 y~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~v-vl~fDgD 324 (648)
.-|++...+..+--.++..|-+||++.++.+.+.++++ ||.+=+=
T Consensus 95 l~e~v~~ikp~vlIG~S~~~g~fteevi~~Ma~~~~~PIIFaLSNP 140 (298)
T 1gq2_A 95 LEDIVKDIKPTVLIGVAAIGGAFTQQILQDXAAFNKRPIIFALSNP 140 (298)
T ss_dssp HHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred HHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCC
T ss_conf 4567632487779951434687889999999840899889980797
No 150
>>2vpu_A TET3, 354AA long hypothetical operon protein FRV; unknown function, protease, thermophilic, SELF-compartmentalising, hydrolase; 1.9A {Pyrococcus horikoshii} PDB: 2pe3_A (A:1-74,A:170-354)
Probab=27.66 E-value=18 Score=14.18 Aligned_cols=40 Identities=20% Similarity=0.040 Sum_probs=25.5
Q ss_pred HHCCCCHHHHHHHHHCCCEEEEE-ECCCCCCHHHHHHHHHH
Q ss_conf 32136626789885126818996-17886622577788888
Q gi|254780834|r 298 LGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDL 337 (648)
Q Consensus 298 ~Gtalt~~~~~~l~r~~~~vvl~-fDgD~AG~kAa~Ra~e~ 337 (648)
.|+|.--+-++.|++.-..|+++ +|+-+-|...+...++.
T Consensus 93 sGva~lLe~ar~l~~~~~~i~fv~~~~EE~G~~Gs~~~~~~ 133 (259)
T 2vpu_A 93 ICLYAMIEAARQLGDHEADIYIVGSVQEEVGLRGARVASYA 133 (259)
T ss_dssp HHHHHHHHHHHHCCCCSSEEEEEECSCCTTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCC
T ss_conf 10667899999975223432001222157643113223445
No 151
>>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} (A:1-152)
Probab=27.65 E-value=27 Score=12.62 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
Q ss_conf 678988512681899617886622577788888877753697306752578888889972
Q gi|254780834|r 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 (648)
Q Consensus 305 ~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir 364 (648)
..++.+.+-++.||++-|.|.-|..=++-.++.+-.-......++=+.+ ....|.+..+
T Consensus 86 ~~lk~~~~~~d~iiiatD~DrEGE~I~~~i~~~~~~~~~~~~~v~R~~f-ssiT~~~I~~ 144 (152)
T 1i7d_A 86 NVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLI-NDLNPQAVER 144 (152)
T ss_dssp HHHHHHHHHCSEEEEECCSSHHHHHHHHHHHHHTTCCHHHHHTCEECCC-SCCSHHHHHH
T ss_pred HHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEE-CCCCHHHHHH
T ss_conf 9999998559989989899813419999999985623347885389996-1579999999
No 152
>>3fos_A Sensor protein; sensor histidine kinase domain, bacillus subtilis subsp. subtilis STR. 168, PSI-2, protein structure initiative; 2.48A {Bacillus subtilis subsp} (A:47-146)
Probab=27.65 E-value=27 Score=12.62 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCE----EEEEEEECCCCEEE
Q ss_conf 98506885351012442256774103455420599734523201210034654100001671----68889707785888
Q gi|254780834|r 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR----LIFPIRSSRGQVIA 219 (648)
Q Consensus 144 l~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~R----i~fPi~~~~g~~i~ 219 (648)
+...|.--..-..-..|+-+.++.+..+.+...+.... .-++++--+. +-.||+|..|+++|
T Consensus 27 ~~~~G~~~~~~~~~~~~~d~~~r~wf~~a~~~~~~~is--------------~~~~~~~tg~~~i~~s~pi~d~~g~~~G 92 (100)
T 3fos_A 27 LNAKGDVTASTTELKTKVNLADRSFFIKAKETKKTVIS--------------DSYSSRITGQPIFTICVPVLDSKRNVTD 92 (100)
T ss_dssp EETTCBEEEESSCCSSCCBCTTSHHHHHHHHHCSCEEC--------------CCEECTTTCSEEEEEEEEEECSSCCEEE
T ss_pred ECCCCCEEECCCCCCCCCCHHHCHHHHHHHHCCCCCCC--------------CEEEECCCCCEEEEEEEEEECCCCCEEE
T ss_conf 95999789805766788893446367777633774213--------------3033046784589999867968997899
Q ss_pred EECCCC
Q ss_conf 501001
Q gi|254780834|r 220 FGGRTL 225 (648)
Q Consensus 220 f~gR~l 225 (648)
+-+-.+
T Consensus 93 vv~~~i 98 (100)
T 3fos_A 93 YLVAAI 98 (100)
T ss_dssp EEEEEE
T ss_pred EEEEEE
T ss_conf 999996
No 153
>>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus} (A:)
Probab=27.60 E-value=27 Score=12.61 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf 999999999997-3267775789999850688535101
Q gi|254780834|r 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM 156 (648)
Q Consensus 120 ~~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~ 156 (648)
+.+-|..|-++- ..+..-..-+.||++.||+++-|+.
T Consensus 12 li~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~ 49 (54)
T 3ff5_A 12 LIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDL 49 (54)
T ss_dssp HHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCHHHCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999568212018689999999976999999999
No 154
>>2pfs_A USP, universal stress protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.25A {Nitrosomonas europaea atcc 19718} (A:)
Probab=27.46 E-value=27 Score=12.59 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6818996178866225777888888777536973067525
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
.++|.+++|++....+|...|+.++... +-.+.++..
T Consensus 6 ~k~ILV~vd~s~~s~~al~~a~~~a~~~---~~~i~~lhv 42 (150)
T 2pfs_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI---GARLSLIHV 42 (150)
T ss_dssp CSEEEEECCCCTTHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCCEEEEEE
T ss_conf 9879999839989999999999999872---990688888
No 155
>>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:163-296)
Probab=27.40 E-value=27 Score=12.59 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=43.3
Q ss_pred HHHHHCCCCCCHH-H---HHCCCCHHHHHHHHHCCC--EEEEEECCCCCCHHH-HHHHHHHHHHHH--HCCCCEEEEECC
Q ss_conf 9987435542113-4---321366267898851268--189961788662257-778888887775--369730675257
Q gi|254780834|r 284 LSLCQAGVQNVVS-S---LGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRA-AYKAIDLVLCHL--IPGNRVNFVLLS 354 (648)
Q Consensus 284 i~l~~~G~~n~va-~---~Gtalt~~~~~~l~r~~~--~vvl~fDgD~AG~kA-a~Ra~e~~l~~l--~~g~~v~vv~LP 354 (648)
.-....|++.++= + .|.--|..|+--+-||+. .|+++...|...-+. .+++..-.|... ..|..++|+.||
T Consensus 36 ~L~~~LGv~kviWL~~G~~~dd~TdgHID~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP 115 (134)
T 3h7c_X 36 ELKKYLGVQSFIWLPRGLYGDEDTNGHIDNXCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRKIQVIKLY 115 (134)
T ss_dssp HHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTTSHHHHHHHHHHHHHHTCBCTTSCBCEEEEEE
T ss_pred HHHHHHCCCEEEEECCCEECCCCCCCCCHHEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99986297559997571207878765500048972898079874288768178999999999999987448853379712
Q ss_pred C
Q ss_conf 8
Q gi|254780834|r 355 R 355 (648)
Q Consensus 355 ~ 355 (648)
.
T Consensus 116 ~ 116 (134)
T 3h7c_X 116 I 116 (134)
T ss_dssp C
T ss_pred C
T ss_conf 4
No 156
>>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A (A:165-334)
Probab=27.30 E-value=27 Score=12.57 Aligned_cols=18 Identities=17% Similarity=0.196 Sum_probs=6.7
Q ss_pred CHHHHHHCCCHHHHHHHH
Q ss_conf 888997203668899886
Q gi|254780834|r 358 DPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 358 DPDe~ir~~G~eaf~~ll 375 (648)
|||.-||..-.+.+..+.
T Consensus 22 D~~~~VR~~A~~~l~~i~ 39 (170)
T 2iw3_A 22 DTKKEVKAAATAAXTKAT 39 (170)
T ss_dssp CSSHHHHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 697999999999999997
No 157
>>2be1_A Serine/threonine-protein kinase/endoribonuclease IRE1; transcription; 2.98A {Saccharomyces cerevisiae} (A:1-41,A:205-272)
Probab=26.94 E-value=27 Score=12.52 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=5.2
Q ss_pred CCCCCCCEEEEEE
Q ss_conf 0000167168889
Q gi|254780834|r 198 SYDRFRNRLIFPI 210 (648)
Q Consensus 198 ~~d~Fr~Ri~fPi 210 (648)
|+..|++|-+..|
T Consensus 52 yitPF~dkSLlAi 64 (109)
T 2be1_A 52 CIAPFRDKSLLAS 64 (109)
T ss_dssp CEEEETTTEEEEE
T ss_pred EEEECCCCEEEEE
T ss_conf 0641589849999
No 158
>>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118} (A:65-109)
Probab=26.89 E-value=27 Score=12.52 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHH-CCCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf 99999999973-26777578999-9850688535101
Q gi|254780834|r 122 EVATDFFHHSL-KNARDKRLHYY-LDERGIDSHAIEM 156 (648)
Q Consensus 122 ~~~~~~~~~~l-~~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648)
+.|..|-+... ..+.|+..... |..+|+++++|+.
T Consensus 5 ~fA~~~vr~r~~~~~~Gp~~IrqeL~qKGI~~~~I~~ 41 (45)
T 3e3v_A 5 NYAESYVRTMMNTSDKGPKVIKLNLSKKGIDDNIAED 41 (45)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999999870254089999999986999999999
No 159
>>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae} (A:)
Probab=26.46 E-value=28 Score=12.45 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 973067525788888899720366889988
Q gi|254780834|r 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 345 g~~v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
|---.+|.||+|+|-.+|+-.+-.+-|.++
T Consensus 61 ~~l~~~V~lP~g~D~neWlA~~~~~ff~~i 90 (236)
T 2hjn_A 61 GVLNQAVKLPRGEDENEWLAVHCVDFYNQI 90 (236)
T ss_dssp GC---CCSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 679999269299870411899899999999
No 160
>>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} (B:1-70)
Probab=26.02 E-value=28 Score=12.39 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=16.1
Q ss_pred EEEEEEECCCCEEE----EECCCCCCC
Q ss_conf 68889707785888----501001465
Q gi|254780834|r 206 LIFPIRSSRGQVIA----FGGRTLSKG 228 (648)
Q Consensus 206 i~fPi~~~~g~~i~----f~gR~l~~~ 228 (648)
-+|||.+ .|+|+| .|||++.+-
T Consensus 8 ~~F~v~~-dG~v~GyA~~vggkv~KPl 33 (70)
T 1ep5_B 8 KTFPIML-EGKINGYACVVGGKLFRPM 33 (70)
T ss_dssp CEEEEEE-TTEEEEEEEEETTEEEEET
T ss_pred CEEEEEE-CCEEEEEEEEECCEEECCC
T ss_conf 4645676-4614578999747530232
No 161
>>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=26.01 E-value=15 Score=14.83 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=9.1
Q ss_pred EEEECCCCCCCCHHH
Q ss_conf 467136888878989
Q gi|254780834|r 61 FYYCFSCHVKGDHLS 75 (648)
Q Consensus 61 ~~~cf~c~~~gd~~~ 75 (648)
-|-||-||..|-.|+
T Consensus 7 ~YiC~rCg~~GH~Ik 21 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIK 21 (55)
T ss_dssp SCCCTTTCCTTSCGG
T ss_pred CCEEECCCCCCCCCE
T ss_conf 878756899881046
No 162
>>2q1f_A Chondroitinase; alpha plus beta, lyase; 2.85A {Bacteroides thetaiotaomicron} (A:1-190)
Probab=25.77 E-value=19 Score=14.03 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=31.3
Q ss_pred CCCCCCCCCCCCHHHHHHHC--CCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEE-ECCCCEEEEECCCCCCCCCCE
Q ss_conf 12442256774103455420--599734523201210034654100001671688897-077858885010014655300
Q gi|254780834|r 156 MFKLGYAPDSRYSLREHLRQ--KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR-SSRGQVIAFGGRTLSKGESVK 232 (648)
Q Consensus 156 ~f~lG~ap~~~~~l~~~l~~--~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~-~~~g~~i~f~gR~l~~~~~~K 232 (648)
.|+|.|. +|..-.--... .|-..+.+.+--+..+...|. .|-||||||+. |. |.-.+|...=
T Consensus 117 ~~~LnF~--GWRa~wV~y~~dm~g~~~~g~~~~ri~AP~~~G~----lflD~l~~~~~vd~---------r~~t~D~QvP 181 (190)
T 2q1f_A 117 PFGINFK--GWRAAWVCYERDXQGTPEEGXNELRIVAPDAKGR----LFIDHLITATKVDA---------RQQTADLQVP 181 (190)
T ss_dssp EEECCCS--EEEEEEEETTTTSEECCCTTCCEEEEECCSSCEE----EEEEEEEEEEEECT---------TCBCCCSSCT
T ss_pred EEEEECC--HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC----EEEEEEEECCCCCC---------CCCCCCCCCC
T ss_conf 8877342--1767665467760799768823899974588982----89999980355445---------6578643366
Q ss_pred ECCCC
Q ss_conf 10387
Q gi|254780834|r 233 YLNSP 237 (648)
Q Consensus 233 YlNSp 237 (648)
|+|+.
T Consensus 182 fvN~~ 186 (190)
T 2q1f_A 182 FVNAG 186 (190)
T ss_dssp TTTTT
T ss_pred CCCCC
T ss_conf 66755
No 163
>>1jmu_B Protein MU-1; protein-protein complex, jelly roll, zinc finger, viral protein; HET: BOG; 2.80A {Reovirus SP} (B:1-145)
Probab=25.42 E-value=26 Score=12.76 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=11.8
Q ss_pred HHHHHHHCCCCHHHHC
Q ss_conf 8999985068853510
Q gi|254780834|r 140 LHYYLDERGIDSHAIE 155 (648)
Q Consensus 140 a~~yl~~Rg~~~~~~~ 155 (648)
-|+||..||+++++.+
T Consensus 79 dR~yLda~gv~~~s~~ 94 (145)
T 1jmu_B 79 NREFLDKLRVLSVSPK 94 (145)
T ss_dssp THHHHHHTTCCCSCCC
T ss_pred HHHHHHCCCCCCCCCE
T ss_conf 0776630376766532
No 164
>>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus bulgaricus, transferase; 1.85A {Lactobacillus delbrueckii subsp} (A:1-131,A:253-303)
Probab=25.42 E-value=29 Score=12.30 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=5.8
Q ss_pred CEECCCCCCCCCCCC
Q ss_conf 001038767653521
Q gi|254780834|r 231 VKYLNSPETILFHKG 245 (648)
Q Consensus 231 ~KYlNSpeT~if~K~ 245 (648)
..++|++-|.+-.-+
T Consensus 58 ~~i~~~GGtiLgtsR 72 (182)
T 1zxx_A 58 AHLINVSGTFLYSAR 72 (182)
T ss_dssp TTCTTCCSCTTCCCC
T ss_pred HHHHHCCCCCCCCCC
T ss_conf 767733774013577
No 165
>>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} (A:)
Probab=25.12 E-value=29 Score=12.26 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=10.4
Q ss_pred CCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8888789899898859997999999999
Q gi|254780834|r 67 CHVKGDHLSFLSALLGCSFIESVQRLAA 94 (648)
Q Consensus 67 c~~~gd~~~f~~~~~~~~f~ea~~~la~ 94 (648)
+|.+|-++--++-..+++..||+..+.+
T Consensus 107 ~~RSg~~~~aylm~~~~~~~~A~~~vr~ 134 (159)
T 1rxd_A 107 LGRAPVLVALALIEGGXKYEDAVQFIRQ 134 (159)
T ss_dssp STTHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8746999999999919799999999997
No 166
>>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} (A:)
Probab=25.04 E-value=15 Score=14.78 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=9.4
Q ss_pred HHHHCCCCCCHHHHHCC
Q ss_conf 98743554211343213
Q gi|254780834|r 285 SLCQAGVQNVVSSLGTA 301 (648)
Q Consensus 285 ~l~~~G~~n~va~~Gta 301 (648)
.++..|++ ..||.||+
T Consensus 45 ~l~~~G~~-i~AT~gT~ 60 (143)
T 2yvq_A 45 QLHNEGFK-LFATEATS 60 (143)
T ss_dssp HHHTTTCE-EEEEHHHH
T ss_pred HHHHCCEE-EEECHHHH
T ss_conf 99750714-67438989
No 167
>>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} PDB: 1xm0_A (A:14-144)
Probab=24.66 E-value=30 Score=12.20 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=4.3
Q ss_pred CCHHHHCCCCCC
Q ss_conf 885351012442
Q gi|254780834|r 149 IDSHAIEMFKLG 160 (648)
Q Consensus 149 ~~~~~~~~f~lG 160 (648)
++.+-...+.-|
T Consensus 17 ftg~y~~~~~~G 28 (131)
T 3e0o_A 17 FQNEYWDHKEEG 28 (131)
T ss_dssp TCSTTSSCCCSE
T ss_pred CCCCCCCCCCCE
T ss_conf 987776788886
No 168
>>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} (A:)
Probab=24.56 E-value=30 Score=12.18 Aligned_cols=37 Identities=32% Similarity=0.362 Sum_probs=29.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6818996178866225777888888777536973067525
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
-++|.+++|+...+++|...+++++... +-.+.++..
T Consensus 2 ~~~iLv~vd~s~~~~~al~~a~~la~~~---~~~i~ll~V 38 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAH---GARLIVVHA 38 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE
T ss_conf 9839999889989999999999999875---999999987
No 169
>>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-fuoric acid, oxidoreductase; HET: FAD; 1.30A {Bacillus SP} (A:1-87,A:144-217,A:323-389)
Probab=24.37 E-value=19 Score=14.06 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=9.7
Q ss_pred HHHHHHHCCCCHHHHCCCCC
Q ss_conf 89999850688535101244
Q gi|254780834|r 140 LHYYLDERGIDSHAIEMFKL 159 (648)
Q Consensus 140 a~~yl~~Rg~~~~~~~~f~l 159 (648)
|-.+|.++|++--++++-..
T Consensus 18 aA~~la~~G~~v~vie~~~~ 37 (228)
T 2gf3_A 18 AGYQLAKQGVKTLLVDAFDP 37 (228)
T ss_dssp HHHHHHHTTCCEEEECSSCS
T ss_pred HHHHHHHCCCCEEEEECCCC
T ss_conf 99999978995899955899
No 170
>>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus} (A:)
Probab=24.26 E-value=30 Score=12.14 Aligned_cols=38 Identities=21% Similarity=0.075 Sum_probs=25.9
Q ss_pred CCEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 681899617886-62257778888887775369730675257
Q gi|254780834|r 314 SPRIVLCFDGDD-PGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 (648)
Q Consensus 314 ~~~vvl~fDgD~-AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP 354 (648)
..+|+++.|++. ..++|...++.++... |-.+.++..-
T Consensus 24 ~~~ilv~vd~~s~~s~~~l~~a~~la~~~---~~~l~~l~v~ 62 (155)
T 3dlo_A 24 YXPIVVAVDKKSDRAERVLRFAAEEARLR---GVPVYVVHSL 62 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH---TCCEEEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEE
T ss_conf 51589998797988999999999999865---9949999986
No 171
>>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP} (A:)
Probab=24.16 E-value=30 Score=12.12 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=29.6
Q ss_pred HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf 506885351012442256774103455420599734523
Q gi|254780834|r 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 (648)
Q Consensus 146 ~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~ 184 (648)
.=|++..++.++.-|-..++++.|...+.--|++.+.+.
T Consensus 33 ~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~l~ 71 (82)
T 3clc_A 33 KSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFF 71 (82)
T ss_dssp HHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf 557479899999769999999999999999698999997
No 172
>>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum} (A:1-14,A:56-118)
Probab=23.86 E-value=30 Score=12.08 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.2
Q ss_pred EEEEEEECCCCEEEEECCCCC
Q ss_conf 688897077858885010014
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR~l~ 226 (648)
...||+|..|++++|-|-..|
T Consensus 55 ~~~pi~d~~G~i~~~iGi~~D 75 (77)
T 3icy_A 55 HXRSSFSDDGLFSGIDGILCE 75 (77)
T ss_dssp EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEEE
T ss_conf 999999999799999999997
No 173
>>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed oxyanion HOLE; 2.00A {Equine arteritis virus} (A:1-149)
Probab=23.77 E-value=31 Score=12.06 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=8.1
Q ss_pred CCEEEECC-CCCCCC
Q ss_conf 97467136-888878
Q gi|254780834|r 59 KGFYYCFS-CHVKGD 72 (648)
Q Consensus 59 ~~~~~cf~-c~~~gd 72 (648)
+++..||. ||.+|.
T Consensus 102 ~~~afcfT~cGDSGS 116 (149)
T 1mbm_A 102 GEVCLAWTTSGDSGS 116 (149)
T ss_dssp SSCEECCCCGGGTTC
T ss_pred CCEEEEECCCCCCCC
T ss_conf 854899815788899
No 174
>>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} (A:)
Probab=23.58 E-value=25 Score=12.84 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHCCHHHHHHHHCCCEEC
Q ss_conf 888999998748888875412221015
Q gi|254780834|r 4 PRDFIKDLLIHIPISNLIGQYVDWDRR 30 (648)
Q Consensus 4 ~~~~i~~i~~~~~i~~vv~~~v~l~~~ 30 (648)
.++++..++. +|.+||+.||+....
T Consensus 5 ~pdyLp~L~~--Eil~VI~KyV~Id~d 29 (58)
T 1ev0_A 5 EPHYLPQLRK--DILEVICKYVQIDPE 29 (58)
T ss_dssp TTSSHHHHHH--HHHHHHHHHSCCCGG
T ss_pred CCHHHHHHHH--HHHHHHHHHEEECHH
T ss_conf 8156999999--999999875885468
No 175
>>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} (A:62-108)
Probab=23.49 E-value=31 Score=12.02 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHCCCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf 999999997326777578999-9850688535101
Q gi|254780834|r 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEM 156 (648)
Q Consensus 123 ~~~~~~~~~l~~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648)
.|..|-+..+....|+..... |..+|++.+.|+.
T Consensus 6 yae~~vr~~~~kg~G~~rI~qeL~qKGi~~~~Ie~ 40 (47)
T 3c1d_A 6 FVARFIASRSRKGYGPARIRQELNQKGISREATEK 40 (47)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999998750798789999999998088999999
No 176
>>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} (A:127-203)
Probab=23.11 E-value=31 Score=11.96 Aligned_cols=18 Identities=17% Similarity=0.495 Sum_probs=14.6
Q ss_pred EEEEEEECCCCEEEEECC
Q ss_conf 688897077858885010
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGR 223 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR 223 (648)
-.|||-|..|+++|+--+
T Consensus 32 ~~~pVvd~~g~lvGivt~ 49 (77)
T 2yzq_A 32 MALPVVDSEGNLVGIVDE 49 (77)
T ss_dssp SEEEEECTTSCEEEEEEG
T ss_pred CCCCCCCCCCEEEEEEEH
T ss_conf 221134677438999889
No 177
>>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23} (A:108-152)
Probab=23.09 E-value=31 Score=11.96 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHC-CCCCHHHHHH-HHHCCCCHHHHCC
Q ss_conf 999999999732-6777578999-9850688535101
Q gi|254780834|r 122 EVATDFFHHSLK-NARDKRLHYY-LDERGIDSHAIEM 156 (648)
Q Consensus 122 ~~~~~~~~~~l~-~~~~~~a~~y-l~~Rg~~~~~~~~ 156 (648)
..|..|-..... +..|+..... |..+|++.++|..
T Consensus 5 ~fA~~~v~~r~~~~~~Gp~~I~qeL~qKGI~~~iIe~ 41 (45)
T 3d5l_A 5 AYAASYVRTMINTDLKGPGIIRQHLRQKGIGESDIDD 41 (45)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9999999986012660599999999986999999999
No 178
>>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} (A:1-128)
Probab=23.02 E-value=31 Score=11.95 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=27.1
Q ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 12681899617886622577788888877753697306752578
Q gi|254780834|r 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 (648)
Q Consensus 312 r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~ 355 (648)
...++|+++.|+.+.-++|...|+.++.+. +..+-+...+.
T Consensus 15 ~~~~~ILvavD~S~~s~~al~~a~~la~~~---~~~~~l~~v~~ 55 (128)
T 1tq8_A 15 SAYKTVVVGTDGSDSSXRAVDRAAQIAGAD---AKLIIASAYLP 55 (128)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHTTT---SEEEEEEECCC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCC---CCEEEEEEEEC
T ss_conf 589969999899989999999999998548---98799999961
No 179
>>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} (A:261-452)
Probab=22.98 E-value=11 Score=16.19 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=44.2
Q ss_pred HHHHH---HCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCE
Q ss_conf 99998---506885351012442256774103455420599734523201210034654100001671688897077858
Q gi|254780834|r 141 HYYLD---ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 (648)
Q Consensus 141 ~~yl~---~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~ 217 (648)
.+||. .+.++...+.++-++-| .+ ..||.++|+=--+|.-+.++...+......|....+++.+..+..+..
T Consensus 6 ~~~l~~~~~~~l~~~~~~~i~~qia----~g-L~yLHs~~iiHrDlKp~NILl~~~~~~~i~Dfg~~~~~~~~~~~~~~~ 80 (192)
T 1fmk_A 6 LDFLKGETGKYLRLPQLVDMAAQIA----SG-MAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQG 80 (192)
T ss_dssp HHHHSHHHHTTCCHHHHHHHHHHHH----HH-HHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC------------
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHH----HH-HHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCHHEECCCCCCEEECC
T ss_conf 9998644588899999999999999----99-999986898678745221899799977980241012236887302101
Q ss_pred EEEE
Q ss_conf 8850
Q gi|254780834|r 218 IAFG 221 (648)
Q Consensus 218 i~f~ 221 (648)
...+
T Consensus 81 ~~~~ 84 (192)
T 1fmk_A 81 AKFP 84 (192)
T ss_dssp --CC
T ss_pred CCCC
T ss_conf 4777
No 180
>>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} (A:157-289)
Probab=22.78 E-value=32 Score=11.91 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHHCCCCCCHH-HHH--CCCCHHHHHHHHHCCC--EEEEEECCCCCCHH--HHHHHHHHHHHHH-HCCCCEEEEECCC
Q ss_conf 9987435542113-432--1366267898851268--18996178866225--7778888887775-3697306752578
Q gi|254780834|r 284 LSLCQAGVQNVVS-SLG--TALTEYQLRLLWKLSP--RIVLCFDGDDPGLR--AAYKAIDLVLCHL-IPGNRVNFVLLSR 355 (648)
Q Consensus 284 i~l~~~G~~n~va-~~G--talt~~~~~~l~r~~~--~vvl~fDgD~AG~k--Aa~Ra~e~~l~~l-~~g~~v~vv~LP~ 355 (648)
.-....|+++++= +-| ---|..|+-.+-||+. .|+++...|...-+ +.....+.+.... ..|...+|+.||.
T Consensus 37 ~l~~~LG~~~viWl~~~~~~D~TdgHiD~~arF~~~~~il~~~~~d~~d~~~~~~~~~~~~L~~~~da~G~~~~i~~lP~ 116 (133)
T 2jer_A 37 KLCDYLNVEKVLWLGDGIDPEETNGHVDDVACFIAPGEVACIYTEDQNSPFYEAAQDAYQRLLKMTDAKGRQLKVHKLCC 116 (133)
T ss_dssp HHHHHHTCSEEEEECCCSCTTTTSSCGGGTEEEEETTEEEEECCCCTTSTTHHHHHHHHHHHHTCBCTTCCBCEEEEECC
T ss_pred HHHHHHCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 99886498079986587667667777544479947995699833898883578999999999765653489865897158
No 181
>>2k4q_A Major tail protein V; GPV, bacteriophage lambda, viral protein; NMR {Enterobacteria phage lambda} (A:)
Probab=22.69 E-value=32 Score=11.90 Aligned_cols=36 Identities=11% Similarity=0.134 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 189961788662257778888887775369730675257888
Q gi|254780834|r 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 316 ~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~ 357 (648)
.+.+.||.+.||+.|..-+.+- ..-..+| +.+|+|.
T Consensus 84 s~~~~~d~~~~~~~aL~~a~~s-----~~~~~~k-i~~pdg~ 119 (156)
T 2k4q_A 84 SFTLAWMPGEQGQQALLAWFNE-----GDTRAYK-IRFPNGT 119 (156)
T ss_dssp EEEEEECTTCCCHHHHHHHHHH-----TCCEEEE-EECTTSC
T ss_pred EEEEEECCCCHHHHHHHHHHHC-----CCEEEEE-EECCCCC
T ss_conf 9998748885789999999868-----9969999-9868998
No 182
>>1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae} (A:)
Probab=22.64 E-value=32 Score=11.89 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=11.0
Q ss_pred EEEEEEECCCCEEEEE
Q ss_conf 6888970778588850
Q gi|254780834|r 206 LIFPIRSSRGQVIAFG 221 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~ 221 (648)
++.|-+=..||++-+|
T Consensus 110 ~v~PAfP~~GR~t~~G 125 (413)
T 1yzy_A 110 VITPALPVNGRTIFNG 125 (413)
T ss_dssp EECCCBGGGTEEEETT
T ss_pred EEECCCCCCCCEEECC
T ss_conf 9965656788389877
No 183
>>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} (A:1-89,A:257-335)
Probab=22.46 E-value=32 Score=11.86 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=24.3
Q ss_pred HCCCCCHHHHHHHHHCCCCHHHHCCC--CCCCCCCC
Q ss_conf 32677757899998506885351012--44225677
Q gi|254780834|r 132 LKNARDKRLHYYLDERGIDSHAIEMF--KLGYAPDS 165 (648)
Q Consensus 132 l~~~~~~~a~~yl~~Rg~~~~~~~~f--~lG~ap~~ 165 (648)
|....|.....++++.|+-++.+-.| .||+++.+
T Consensus 91 LSKR~g~~si~~~re~G~~PeAl~nyLa~LG~s~~~ 126 (168)
T 2ja2_A 91 LSKRDPQSNLFAHRDRGFIPEGLLNYLALLGWSIAD 126 (168)
T ss_dssp CCTTSGGGBHHHHHHHTCCHHHHHHHHHTSSCCSCS
T ss_pred CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCC
T ss_conf 344578623677997598889999999985778788
No 184
>>1ka5_A Phosphocarrier protein HPR; open faced beta-sandwich, structural proteomics in europe, spine, structural genomics, ligand transport; NMR {Staphylococcus aureus} (A:)
Probab=22.36 E-value=32 Score=11.85 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 789885126818996178866225777888888777536973067525788888899720366889988641
Q gi|254780834|r 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 (648)
Q Consensus 306 ~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~ 377 (648)
=++...+|...|.+-+||-.+--+-.+..+-+ -+..|-.+.+.. +|.|-++.+ +++.+++++
T Consensus 22 lv~~a~~~~~~I~i~~~~~~~~akSil~ll~L---~~~~G~~i~i~~--~G~De~~Al-----~~l~~~l~~ 83 (88)
T 1ka5_A 22 LVQTASKFDSDIQLEYNGKKVNLKSIMGVMSL---GVGKDAEITIYA--DGSDESDAI-----QAISDVLSK 83 (88)
T ss_dssp HHHHHHHHSSEEEEEETTEEEETTCHHHHHTT---TCCTTCEEEEEE--ESSSHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEECCEEEECHHHHHHHHC---CCCCCCEEEEEE--ECCCHHHHH-----HHHHHHHHH
T ss_conf 99999758998999989999852829999855---999989999999--786899999-----999999986
No 185
>>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} (A:1-24,A:113-251)
Probab=22.14 E-value=33 Score=11.81 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=32.3
Q ss_pred EEECCHHHHHHHHHCCCCCCHHHHHCCC-CHHHHHH--HHHCCCEEEEEECCCCCCHHHHHHHH
Q ss_conf 9971438899987435542113432136-6267898--85126818996178866225777888
Q gi|254780834|r 275 ILVEGYMDVLSLCQAGVQNVVSSLGTAL-TEYQLRL--LWKLSPRIVLCFDGDDPGLRAAYKAI 335 (648)
Q Consensus 275 i~vEGy~Dvi~l~~~G~~n~va~~Gtal-t~~~~~~--l~r~~~~vvl~fDgD~AG~kAa~Ra~ 335 (648)
++..|-.+++..-..|++-+|.|.|+.- -+.-++. |..|.+.|+.+...|.+-...+++.+
T Consensus 24 ~l~pgv~e~L~~Lk~~~~l~IvSn~~~~~~~~~l~~~gl~~~Fd~i~~~~KP~p~~~~~~l~~l 87 (163)
T 2pke_A 24 LVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKDPQTYARVLSEF 87 (163)
T ss_dssp TBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGGGTCCCEEEESCCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 6785699986332110220014578678788888875311211211002577548999988760
No 186
>>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} (A:1-99,A:163-229,A:321-382)
Probab=22.10 E-value=25 Score=12.86 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=6.8
Q ss_pred HHHHCCCCHHHHCCCCC
Q ss_conf 99850688535101244
Q gi|254780834|r 143 YLDERGIDSHAIEMFKL 159 (648)
Q Consensus 143 yl~~Rg~~~~~~~~f~l 159 (648)
+|.++|++--++++-..
T Consensus 35 ~La~~G~~V~iiE~~~~ 51 (228)
T 1ryi_A 35 YLAKENKNTALFESGTM 51 (228)
T ss_dssp HHHHTTCCEEEECSSST
T ss_pred HHHHCCCCEEEEECCCC
T ss_conf 99988995899959999
No 187
>>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* (A:)
Probab=22.07 E-value=33 Score=11.80 Aligned_cols=78 Identities=9% Similarity=0.095 Sum_probs=53.0
Q ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCCCHHHHHH------HHHHHHHHHHCCCC--EEEEECCC-
Q ss_conf 8743554211343213662678988512-68189961788662257778------88888777536973--06752578-
Q gi|254780834|r 286 LCQAGVQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYK------AIDLVLCHLIPGNR--VNFVLLSR- 355 (648)
Q Consensus 286 l~~~G~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~AG~kAa~R------a~e~~l~~l~~g~~--v~vv~LP~- 355 (648)
+...|+...+-+.|+.++.+.+..+... ...+.+.+|+...-.....+ .++.+..+...|.. +..+.+|.
T Consensus 94 ~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~ 173 (245)
T 3c8f_A 94 CKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGW 173 (245)
T ss_dssp HHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEEECCCSSHHHHHHHHSSCSHHHHHHHHHHHHHTCCEEEEEEECTTT
T ss_pred HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC
T ss_conf 88635714661377311445556542133210114500100678887627332666766545422555137766323898
Q ss_pred CCCHHHHH
Q ss_conf 88888997
Q gi|254780834|r 356 GEDPDSFI 363 (648)
Q Consensus 356 G~DPDe~i 363 (648)
+.+++++.
T Consensus 174 ~~~~~~~~ 181 (245)
T 3c8f_A 174 SDDDDSAH 181 (245)
T ss_dssp TCCHHHHH
T ss_pred CCCHHHHH
T ss_conf 89999999
No 188
>>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HUPR1; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B (A:)
Probab=21.98 E-value=33 Score=11.79 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=52.4
Q ss_pred EEEEECCHHHHHHHH----HCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE
Q ss_conf 089971438899987----4355421134321366267898851268189961788662257778888887775369730
Q gi|254780834|r 273 FIILVEGYMDVLSLC----QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 (648)
Q Consensus 273 ~~i~vEGy~Dvi~l~----~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v 348 (648)
.++|||.-.+...+. ..|+.-.+|..| .+-+..+.+....++++ |-.=.|.. +++++-.+.+.+..+
T Consensus 3 ~ILiVDD~~~~~~~l~~~l~~g~~v~~a~~~----~~al~~l~~~~~dlill-D~~lP~~~----G~ell~~lr~~~~~~ 73 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDDFDVLTAQGA----EAAIAILEEEWVQVIIC-DQRMPGRT----GVDFLTEVRERWPET 73 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTTSCEEEESSH----HHHHHHHHHSCEEEEEE-ESCCSSSC----HHHHHHHHHHHCTTS
T ss_pred EEEEEECCHHHHHHHHHHHHCCCEEEEECCH----HHHHHHHHHCCCCEEEE-ECCCCCCC----HHHHHHHHHHCCCCC
T ss_conf 8999969899999999999879999996549----99999998378988996-34454243----899999999718999
Q ss_pred EEEECCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 67525788888899720366889988641499
Q gi|254780834|r 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 349 ~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648)
.|+.+....|.++.++.-..-+...++.+...
T Consensus 74 pvI~lt~~~~~~~~~~~~~~~Ga~dyl~KP~~ 105 (139)
T 2jk1_A 74 VRIIITGYTDSASMMAAINDAGIHQFLTKPWH 105 (139)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTCCEEEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 68989897998999999997599718869899
No 189
>>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} (A:133-268)
Probab=21.97 E-value=33 Score=11.79 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=44.6
Q ss_pred CEEEECCCCCCC-CHHHHHHHHCCCCHHHHHHHHHHHHCCCC------CCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 746713688887-89899898859997999999999818858------7768203677788999-999999999999997
Q gi|254780834|r 60 GFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKIQTD-LIRLIEVATDFFHHS 131 (648)
Q Consensus 60 ~~~~cf~c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~gi~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 131 (648)
|+|-=+|+|.++ +.|.=+-|.+ |..||...||+- |..+-...+.++..-. =|+.++.....+...
T Consensus 9 Gy~Tk~GD~~~d~~pi~~L~Kt~-------V~~Lar~l~vP~~ii~k~PSaeL~~~qtDE~~lg~~Y~~lD~~l~~~~~~ 81 (136)
T 1xng_A 9 GYGTLFGDLACAINPIGELFKTE-------VYELARRLNIPKKILNKPPSADLFVGQSDEKDLGYPYSVIDPLLKDIEAL 81 (136)
T ss_dssp TCSCTTTTTCCSEETTTTSCHHH-------HHHHHHHTTCCHHHHTSCCCCCSSTTCCHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHCCCCCCCCCCCHHH-------HHHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHH
T ss_conf 65512544234300123768999-------99999981984887127999651236787665158889999999987752
Q ss_pred HCCCCCHHHHHHHHHCCCCHHHHCCCC
Q ss_conf 326777578999985068853510124
Q gi|254780834|r 132 LKNARDKRLHYYLDERGIDSHAIEMFK 158 (648)
Q Consensus 132 l~~~~~~~a~~yl~~Rg~~~~~~~~f~ 158 (648)
...+. ...+.|..-|++.+.++++.
T Consensus 82 ~~~~~--~~~~~l~~~~~~~~~v~~i~ 106 (136)
T 1xng_A 82 FQTKP--IDTETLAQLGYDEILVKNIT 106 (136)
T ss_dssp SSSSC--CCHHHHHHTTCCHHHHHHHH
T ss_pred CCCCC--CCHHHHHHCCCCHHHHHHHH
T ss_conf 12245--89999988499999999999
No 190
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:1-14,A:100-235)
Probab=21.87 E-value=33 Score=11.77 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=18.2
Q ss_pred CEEEEEC-CH-HHHHHHHHCCCCCC-HHHHHC
Q ss_conf 7089971-43-88999874355421-134321
Q gi|254780834|r 272 SFIILVE-GY-MDVLSLCQAGVQNV-VSSLGT 300 (648)
Q Consensus 272 ~~~i~vE-Gy-~Dvi~l~~~G~~n~-va~~Gt 300 (648)
+.++.|. .+ -|+.+...+|+..+ |..-|.
T Consensus 91 ~~~i~VGD~~~~Di~~A~~aG~~ti~v~~~~~ 122 (150)
T 2om6_A 91 EESLHIGDTYAEDYQGARKVGXWAVWINQEGD 122 (150)
T ss_dssp GGEEEEESCTTTTHHHHHHTTSEEEEECTTCC
T ss_pred CCCEEECCCCHHHHHHHHHCCCEEEEECCCCC
T ss_conf 22404436728669999986998999889998
No 191
>>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* (A:406-496,A:551-689)
Probab=21.77 E-value=33 Score=11.75 Aligned_cols=28 Identities=4% Similarity=0.084 Sum_probs=15.8
Q ss_pred CCHHHHCCCCCCCCCCCCCHHHHHHHCC
Q ss_conf 8853510124422567741034554205
Q gi|254780834|r 149 IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 (648)
Q Consensus 149 ~~~~~~~~f~lG~ap~~~~~l~~~l~~~ 176 (648)
++++-+-.+.|-|+.+.++..++|+.++
T Consensus 93 lnpeRmPDIDiDf~~~~R~eVi~Yi~~k 120 (230)
T 3f2b_A 93 FKGDKVPDIDLNFSGEYQPRAHNYTKVL 120 (230)
T ss_dssp TTSCSCCCEEEEEETTTHHHHHHHHHHH
T ss_pred CCCCCCCHHHCCCCHHHHHHHHHHHHHH
T ss_conf 3313345322025247789999988876
No 192
>>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} (A:)
Probab=21.63 E-value=33 Score=11.73 Aligned_cols=38 Identities=16% Similarity=0.068 Sum_probs=17.7
Q ss_pred ECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCC
Q ss_conf 71438899987435542113432136626789885126
Q gi|254780834|r 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314 (648)
Q Consensus 277 vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~ 314 (648)
+++-.-.-.+...++...++.+-.-.+.+++.++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~e~l~~~a~~~ 73 (337)
T 1ps1_A 36 IRSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLM 73 (337)
T ss_dssp CCSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 89879999986059999999977899999999999999
No 193
>>1a1t_A Nucleocapsid protein; stem-loop RNA; NMR {Human immunodeficiency virus 1} (A:)
Probab=21.45 E-value=31 Score=12.02 Aligned_cols=11 Identities=36% Similarity=0.914 Sum_probs=5.4
Q ss_pred EEEECCCCCCC
Q ss_conf 46713688887
Q gi|254780834|r 61 FYYCFSCHVKG 71 (648)
Q Consensus 61 ~~~cf~c~~~g 71 (648)
.-+||-||..|
T Consensus 12 ~ikCfNCGk~G 22 (55)
T 1a1t_A 12 TVKCFNCGKEG 22 (55)
T ss_dssp TCBCTTTCCBS
T ss_pred CCEEECCCCCC
T ss_conf 61063578745
No 194
>>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A (A:)
Probab=21.39 E-value=34 Score=11.69 Aligned_cols=46 Identities=7% Similarity=-0.072 Sum_probs=32.1
Q ss_pred EECCCCEE-EECC-CCCCCCH-HHHHHHHCCCCHHHHHHHHHHHH-CCCC
Q ss_conf 81789746-7136-8888789-89989885999799999999981-8858
Q gi|254780834|r 55 CNDSKGFY-YCFS-CHVKGDH-LSFLSALLGCSFIESVQRLAAIA-GVPL 100 (648)
Q Consensus 55 v~~~~~~~-~cf~-c~~~gd~-~~f~~~~~~~~f~ea~~~la~~~-gi~~ 100 (648)
..+.+..+ ||-. =|.+|-+ .-++|...++++.||++.+..+- ++.+
T Consensus 78 ~~~~~~VlVHC~~G~~RS~~~~~~yL~~~~~~~~~~A~~~v~~~R~~~~~ 127 (144)
T 3ezz_A 78 KDCRGRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRRSIISP 127 (144)
T ss_dssp HHTTCCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTCTTCCC
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 62472278884012551799999999998399999999999998996689
No 195
>>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of NADP, oxidoreductase; HET: NAP; 2.00A {Homo sapiens} (A:)
Probab=21.28 E-value=34 Score=11.67 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=8.3
Q ss_pred HHHHHHHCCCCEEEEECC
Q ss_conf 887775369730675257
Q gi|254780834|r 337 LVLCHLIPGNRVNFVLLS 354 (648)
Q Consensus 337 ~~l~~l~~g~~v~vv~LP 354 (648)
++-.+...|.+|+|+.=|
T Consensus 68 l~~~L~~~G~~V~faIHP 85 (207)
T 1djl_A 68 LVKMLTEQGKKVRFGIHP 85 (207)
T ss_dssp HHHHHHHTTCEEEEEECT
T ss_pred HHHHHHHCCCEEEEEECC
T ss_conf 999999779837898420
No 196
>>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A (A:1-148,A:302-364)
Probab=21.20 E-value=34 Score=11.66 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=21.6
Q ss_pred CEEEEE-ECCCCCCHHHHHHHH-HHHHHHHHCCCCE-EEEECCC
Q ss_conf 818996-178866225777888-8887775369730-6752578
Q gi|254780834|r 315 PRIVLC-FDGDDPGLRAAYKAI-DLVLCHLIPGNRV-NFVLLSR 355 (648)
Q Consensus 315 ~~vvl~-fDgD~AG~kAa~Ra~-e~~l~~l~~g~~v-~vv~LP~ 355 (648)
.+|.++ --||.||.||+++++ +.++ ..+.++ +|.-..+
T Consensus 4 kni~I~~sGG~tpgiNasi~gvv~~a~---~~~~~v~~iyG~~~ 44 (211)
T 3hno_A 4 KNAFYAQSGGVTAVINASAAGVIEAAR---KQSGKIGRIYAGRN 44 (211)
T ss_dssp CEEEEEECSSCCSSHHHHHHHHHHHHH---HHCSSCCCEEEETT
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCEEEEEEECC
T ss_conf 648998888825889799999999999---83994879976735
No 197
>>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} (A:)
Probab=20.93 E-value=34 Score=11.62 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 067525788888899720366889988
Q gi|254780834|r 348 VNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 348 v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
-.+|.+|+|.|-+||+-.+-.+-|..+
T Consensus 11 ~~~v~lP~g~d~neWlA~~~~~ff~~i 37 (185)
T 1pi1_A 11 RQAVMLPEGEDLNEWIAVNTVDFFNQI 37 (185)
T ss_dssp HHHTSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 999449199871220999999999999
No 198
>>2vug_A PAB1020; RNA, ligase, AMPPNP, nucleotidyl- transferase; HET: ANP; 2.9A {Pyrococcus abyssi GE5} (A:105-205)
Probab=20.88 E-value=2.3 Score=22.39 Aligned_cols=29 Identities=24% Similarity=0.532 Sum_probs=18.9
Q ss_pred CCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 88888754122210158877777557534588885878
Q gi|254780834|r 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS 52 (648)
Q Consensus 15 ~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektps 52 (648)
+.||.+=|+...++|.|- + |||..+|-+.
T Consensus 4 VRI~~~~g~ilA~TRgG~-------I--CPfTT~rv~~ 32 (101)
T 2vug_A 4 VRVVMYKGKMLGITRGGF-------I--CPFTTERIPD 32 (101)
T ss_dssp EEEEEETTEEEEEETTSC-------B--CHHHHHHGGG
T ss_pred EEEEEECCEEEEEECCCC-------C--CCCCHHHHHH
T ss_conf 999998999999948984-------5--7760566899
No 199
>>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3} (B:1-81,B:145-215,B:313-382)
Probab=20.86 E-value=33 Score=11.79 Aligned_cols=15 Identities=33% Similarity=0.341 Sum_probs=6.5
Q ss_pred HHHHCCCCHHHHCCC
Q ss_conf 998506885351012
Q gi|254780834|r 143 YLDERGIDSHAIEMF 157 (648)
Q Consensus 143 yl~~Rg~~~~~~~~f 157 (648)
+|.+||++--++++-
T Consensus 23 ~La~~G~~v~ilE~~ 37 (222)
T 1y56_B 23 ELAKRGEEVTVIEKR 37 (222)
T ss_dssp HHHHTTCCEEEECSS
T ss_pred HHHHCCCCEEEECCC
T ss_conf 999889939998699
No 200
>>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus HB8} PDB: 2yvz_A (A:204-278)
Probab=20.61 E-value=35 Score=11.57 Aligned_cols=17 Identities=12% Similarity=0.452 Sum_probs=13.5
Q ss_pred EEEEEECCCCEEEEECC
Q ss_conf 88897077858885010
Q gi|254780834|r 207 IFPIRSSRGQVIAFGGR 223 (648)
Q Consensus 207 ~fPi~~~~g~~i~f~gR 223 (648)
-+|+-|..|+++|+=-+
T Consensus 29 ~lpVvD~~g~lvGiit~ 45 (75)
T 2yvy_A 29 VLPVVDEEGRLVGIVTV 45 (75)
T ss_dssp EEEEECTTSBEEEEEEH
T ss_pred EEEEECCCCEEEEEEEH
T ss_conf 89898689969999789
No 201
>>1bjt_A Topoisomerase II; quaternary change, DNA-binding, DNA topology; 2.50A {Saccharomyces cerevisiae} (A:1-153,A:197-245)
Probab=20.53 E-value=35 Score=11.55 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred CHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH-----HHHHHCCCCEEEEECCCCCCHHHHHHCCCH
Q ss_conf 113432136626789885126818996178866225777888888-----777536973067525788888899720366
Q gi|254780834|r 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV-----LCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 (648)
Q Consensus 294 ~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~-----l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~ 368 (648)
-+..+|+.+.......-..--.+|+||-|.|.-|.. .|++-+. .|-|-..-.|+++..|=|.--+-..+++
T Consensus 90 l~~aLG~~~~~~~~d~~~lRY~kIiImTDADvDGsH--Ir~LLltfF~r~~p~Li~~G~vyia~pP~gt~~~~~~~~y-- 165 (202)
T 1bjt_A 90 IKKIMGLQHRKKYEDTKSLRYGHLMIMTDQDHDGSH--IKGLIINFLESSFLGLLDIQGFLLEFITLGTSLAQEVREY-- 165 (202)
T ss_dssp HHHHHTCCSSBCCSCSSSSSCSEEEEEEC-----CC--HHHHHHHHHHHHBTTTTTSTTSEEECCCCSTTHHHHHHHH--
T ss_pred HHHHHCCCCCCCCCCCHHCCCCCEEEEECCCCCCHH--HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHH--
T ss_conf 999978898988786001676847999889888426--9999999999972897355884999848544560345777--
Q ss_pred HHHHHHHHHCCCHHHHHHH
Q ss_conf 8899886414992799999
Q gi|254780834|r 369 TAFEKLIVESLPLVDMLWK 387 (648)
Q Consensus 369 eaf~~ll~~A~~l~dFl~~ 387 (648)
|.++=... +.|.|.
T Consensus 166 --~~~~~~h~---~~f~~~ 179 (202)
T 1bjt_A 166 --FSNLDRHL---KIFHSL 179 (202)
T ss_dssp --HHHHHHHH---HHHHHC
T ss_pred --HCCCCCCC---CEEEEC
T ss_conf --53600002---102312
No 202
>>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} (A:1-196)
Probab=20.52 E-value=31 Score=12.07 Aligned_cols=71 Identities=10% Similarity=-0.047 Sum_probs=41.0
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCHHHHHHHHHCC
Q ss_conf 9898859997999999999818858776---8203677788999999999999999997----32677757899998506
Q gi|254780834|r 76 FLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHS----LKNARDKRLHYYLDERG 148 (648)
Q Consensus 76 f~~~~~~~~f~ea~~~la~~~gi~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~a~~yl~~Rg 148 (648)
.++..++.++.+....++...|.+-+-. .+...+. +.+--.....++... -.+..|-+|...|.++|
T Consensus 30 ~l~~~~~~~~~~~~~~i~~~~~~~g~vsvev~~~d~~~------~i~~A~~l~~~~~ni~IKIP~T~~Gi~Ai~~L~~~G 103 (196)
T 1l6w_A 30 SIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEG------MVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAEG 103 (196)
T ss_dssp HHHHHHCSCHHHHHHHHHHHTTTCSEEEEECCCSSHHH------HHHHHHHHHHHSTTCEEEEECSHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCHHH------HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCC
T ss_conf 99986699999999999998098996899997376777------899999999728675899506275789999988739
Q ss_pred CCHH
Q ss_conf 8853
Q gi|254780834|r 149 IDSH 152 (648)
Q Consensus 149 ~~~~ 152 (648)
++-.
T Consensus 104 I~vn 107 (196)
T 1l6w_A 104 IPTL 107 (196)
T ss_dssp CCEE
T ss_pred CCEE
T ss_conf 3288
No 203
>>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} (A:1-63)
Probab=20.51 E-value=35 Score=11.55 Aligned_cols=21 Identities=24% Similarity=0.718 Sum_probs=16.0
Q ss_pred EEEEEECCCCEEEE----ECCCCCCC
Q ss_conf 88897077858885----01001465
Q gi|254780834|r 207 IFPIRSSRGQVIAF----GGRTLSKG 228 (648)
Q Consensus 207 ~fPi~~~~g~~i~f----~gR~l~~~ 228 (648)
+|||.. .|+|.|+ |||++.+-
T Consensus 2 ~F~v~~-dG~v~GyAc~vg~kv~kP~ 26 (63)
T 1vcp_A 2 IFEVKH-EGKVTGYACLVGDKVMKPA 26 (63)
T ss_dssp EEEEEE-TTEEEEEEECBTTEEBCBT
T ss_pred EEEEEE-CCEEEEEEEEECCEEECCC
T ss_conf 103655-6725688999757630231
No 204
>>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} (A:200-366)
Probab=20.42 E-value=24 Score=13.09 Aligned_cols=14 Identities=0% Similarity=0.176 Sum_probs=5.5
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 37998899999999
Q gi|254780834|r 509 RYDNNELQKLWSFL 522 (648)
Q Consensus 509 ~f~~~~~~~L~~~i 522 (648)
....|-+..+++.+
T Consensus 117 ~i~~Pl~~~vy~Il 130 (167)
T 1evy_A 117 KVKMPLCHQIYEIV 130 (167)
T ss_dssp TCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 99984999999999
No 205
>>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* (A:1-348)
Probab=20.28 E-value=35 Score=11.51 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 78888889972036688998864149
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVESL 379 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A~ 379 (648)
-.+.||++++.++|+|.++-++-...
T Consensus 301 gn~v~~~~~~~~yg~D~~R~~~~~~~ 326 (348)
T 2csx_A 301 GNVVDPYEVVQEYGLDEVRYFLLREV 326 (348)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 86569899998829779999776417
No 206
>>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloidosis--finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} (A:)
Probab=20.21 E-value=35 Score=11.50 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=34.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCHHHHHHCCCHH
Q ss_conf 81899617886622577788888877753697--30675257888888997203668
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN--RVNFVLLSRGEDPDSFIRCYGKT 369 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~--~v~vv~LP~G~DPDe~ir~~G~e 369 (648)
...++..=|-.+=..--..|.+++..+..... ...+..+.+|+.|++|.+..|..
T Consensus 37 ~~~ifvW~G~~s~~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~~gg~ 93 (104)
T 1kcq_A 37 GNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHVSEEGTEPEAMLQVLGPK 93 (104)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHHHHHHTSTTCSEEEEEETTCCCHHHHHHHCSC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHCCC
T ss_conf 998999989979999999999999999862779997399987899949999983998
No 207
>>3eat_X Pyoverdine biosynthesis protein PVCB; paerucumarin, Fe/alpha-ketoglutarate dependent hydroxylase, 2-isocyano-6,7-dihydroxycoumarin; 2.50A {Pseudomonas aeruginosa} (X:1-145,X:239-293)
Probab=20.17 E-value=23 Score=13.20 Aligned_cols=13 Identities=15% Similarity=0.053 Sum_probs=5.0
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999981885
Q gi|254780834|r 87 ESVQRLAAIAGVP 99 (648)
Q Consensus 87 ea~~~la~~~gi~ 99 (648)
++++.+-.++|+-
T Consensus 46 ~~l~~~l~~~Gvv 58 (200)
T 3eat_X 46 QWLKGLARSHHLL 58 (200)
T ss_dssp HHHHHHHHHHSEE
T ss_pred HHHHHHHHHCCEE
T ss_conf 9999999875999
Done!