HHsearch results for GI: 254780834 and protein with PDBid: 1nui_A
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.91 E-value=2.6e-24 Score=241.25 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=161.0
Q ss_pred CEE--EECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 557--534588885878798178974671368888789899898859997999999999818858776820367778899
Q gi|254780834|r 38 DYW--ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 (648)
Q Consensus 38 ~~~--~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~ 115 (648)
.|. +.||....+. .|+|+.+ +.||||+||.++....+.+.......+ ...........
T Consensus 10 ~~~~h~pCP~Cg~~d-~~~~~~d-g~~~C~~Cg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~------ 69 (255)
T 1nui_A 10 VFLYHIPCDNCGSSD-GNSLFSD-GHTFCYVCEKWTAGNEDTKERASKRKP------------SGGKPGTYNVW------ 69 (255)
T ss_dssp CEEEEECCSSSCCSS-CEEEETT-SCEEETTTCCEEC----CHHHHHTTCC------------CCBSTTCBCCB------
T ss_pred EEECCCCCCCCCCCC-CCEEEEC-CCEEECCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCC------
T ss_conf 756768999898999-9879529-988976799844787633332222444------------43432223323------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCC
Q ss_conf 99999999999999973267775789999850688535101244225677410345542059973452320121003465
Q gi|254780834|r 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 (648)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~ 195 (648)
.+. .......||.+|||+.++++.|++|+...+
T Consensus 70 ---------------~~~--~~~~~~~~L~~RgIs~e~~~~~~~~~~~~~------------------------------ 102 (255)
T 1nui_A 70 ---------------NFG--ESNGRYSALTARGISKETCQKAGYWIAKVD------------------------------ 102 (255)
T ss_dssp ---------------CGG--GTTCBCCCBGGGTBCHHHHHHHTEEEEEET------------------------------
T ss_pred ---------------CCC--CCCCCCHHHHHCCCCHHHHHHCEEEEEECC------------------------------
T ss_conf ---------------333--234430027577999899755708999659------------------------------
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 41000016716888970778588850100146553001038767653521011081788886433100002356787089
Q gi|254780834|r 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275 (648)
Q Consensus 196 ~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i 275 (648)
...+++||++|..|++++|.+|.+++. .++..++ +...+|+.+.+. ..++++
T Consensus 103 ------~~~~~~~~~~~~~g~~~~~~~r~~~~k--~~~~~~~------~~~~~~~~~~~~--------------~~~~v~ 154 (255)
T 1nui_A 103 ------GVMYQVADYRDQNGNIVSQKVRDKDKN--FKTTGSH------KSDALFGKHLWN--------------GGKKIV 154 (255)
T ss_dssp ------TEEEEEEEEECTTSCEEEEEEECTTCC--CEEEECC------CTTCCTTGGGCC--------------CBSCCE
T ss_pred ------CCEEEEEEEECCCCCEEEEEEECCCCC--CEECCCC------CCCCCCHHHHCC--------------CCCEEE
T ss_conf ------904899621379997864575013676--3154888------767442012126--------------887799
Q ss_pred EECCHHHHHHHHHCCCCCCHHHH---HCCCCHHHHHH---HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 97143889998743554211343---21366267898---8512681899617886622577788888877753697306
Q gi|254780834|r 276 LVEGYMDVLSLCQAGVQNVVSSL---GTALTEYQLRL---LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 (648)
Q Consensus 276 ~vEGy~Dvi~l~~~G~~n~va~~---Gtalt~~~~~~---l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~ 349 (648)
||||+||+++++|+|+.++++.. |++-+..++.. +....++||||||+|+||++|+.|+++++ . ...++
T Consensus 155 I~EGe~Dalsl~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~Iii~~DnD~aG~~aa~k~~~~l----~-~~~~~ 229 (255)
T 1nui_A 155 VTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVL----P-AGKVR 229 (255)
T ss_dssp EESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHS----C-TTTEE
T ss_pred EEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC----C-CCCEE
T ss_conf 991468899999861268851024655310023325666653155659996799999999999999974----6-78799
Q ss_pred EEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 75257888888997203668899886
Q gi|254780834|r 350 FVLLSRGEDPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 350 vv~LP~G~DPDe~ir~~G~eaf~~ll 375 (648)
++.+| ++||+|+++++|.++|.+.+
T Consensus 230 iv~~p-~KD~nd~l~~~~~~~~~~~i 254 (255)
T 1nui_A 230 VAVLP-CKDANECHLNGHDREIMEQV 254 (255)
T ss_dssp ECCCS-SSSHHHHHTTTTHHHHHHHH
T ss_pred EEECC-CCCHHHHHHCCCHHHHHHHH
T ss_conf 96189-87989998829999999965