HHsearch results for GI: 254780834 and protein with PDBid: 2au3_A
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=0 Score=761.12 Aligned_cols=399 Identities=34% Similarity=0.590 Sum_probs=354.9
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 78889999987488888754122210158877777557534588885878798178974671368888789899898859
Q gi|254780834|r 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 (648)
Q Consensus 3 i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~ 82 (648)
+| +.||+|++++||||||++||+|+|+|+| |+|+||||+||||||+|||+||+|||||||+|||+|+|||+++|
T Consensus 3 ~~-~~i~~ik~~~~I~~v~~~~~~l~~~G~~-----~~~~CPfH~dktPSf~V~~~k~~~~CF~Cg~~Gd~i~fv~~~~~ 76 (407)
T 2au3_A 3 MS-SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYED 76 (407)
T ss_dssp CC-CHHHHHHHHCCHHHHHHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHHHT
T ss_pred CC-HHHHHHHHHCCHHHHHHHCCEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf 71-7999999849999998506228986984-----79879498998998599889998996789999789999999819
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf 99799999999981885877682036777889999999999999999973267775789999850688535101244225
Q gi|254780834|r 83 CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 (648)
Q Consensus 83 ~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~a 162 (648)
++|+||+++||+++||+++....... .....+++.+..+|+..+.. +..+++|+..||++++++++|.+||+
T Consensus 77 ~sf~eA~~~l~~~~gi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~yl~~r~l~~~~i~~f~~g~~ 148 (407)
T 2au3_A 77 ISYFEAALELAKRYGKKLDLEKISKD------EKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYA 148 (407)
T ss_dssp CCHHHHHHHHHHHHTCCCCTTSCCHH------HHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEEC
T ss_pred CCHHHHHHHHHHHHCCCCHHCCCHHH------HHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 98899999999981976300111016------78999999999999997513--89999999867999999986223577
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCC
Q ss_conf 67741034554205997345232012100346541000016716888970778588850100146553001038767653
Q gi|254780834|r 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 (648)
Q Consensus 163 p~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if 242 (648)
|..|..+.... ..+...+ ....++......|. +||+|++||||||+|.+|++|||+||.+.++..|||+|||+|++|
T Consensus 149 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~d~f~~ri~fPi~~~~G~~v~f~~R~~~~~~~~Kylns~~~~~f 225 (407)
T 2au3_A 149 PSSEALVKVLK-ENDLLEA-YLETKNLLSPTKGV-YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVF 225 (407)
T ss_dssp CCHHHHHHHHH-HHTCHHH-HHTTTCEECSSTTC-CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSC
T ss_pred CCCHHHHHHHH-HCCHHHH-HHHHCCCCCCCCCC-CEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 86247788875-0010688-87750661037895-112256734500450079389998666478887654467653001
Q ss_pred CCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEEC
Q ss_conf 52101108178888643310000235678708997143889998743554211343213662678988512681899617
Q gi|254780834|r 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322 (648)
Q Consensus 243 ~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fD 322 (648)
+|+..|||++.+++.+++. +.+||||||||||++|++|++|+||++||++|.+|+..|+|++++||+|||
T Consensus 226 ~K~~~l~~~~~~~~~~~~~----------~~viivEG~~D~l~l~~~Gi~n~va~~Gt~lt~~~~~~L~~~~~~vvl~~D 295 (407)
T 2au3_A 226 KKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYD 295 (407)
T ss_dssp CGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEECC
T ss_pred CCCCCCHHHHHHHHHHCCC----------CCCEEECCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 5530000069999863025----------432530363039999866976457415776838999998611671588458
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88662257778888887775369730675257888888997203668899886414992799999998530233145799
Q gi|254780834|r 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 (648)
Q Consensus 323 gD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka 402 (648)
+|+||++|+.|+++.+ ++.|++++|+.||+|+|||||++++|.++|.+++++|.+++||+|+.+.++.+..+++.+
T Consensus 296 ~D~AG~~A~~k~~~~l---~~~g~~v~vv~lP~gkDpdd~l~~~g~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~- 371 (407)
T 2au3_A 296 GDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFR- 371 (407)
T ss_dssp SSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHGGGCHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHH---HHCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH-
T ss_conf 8699999999999998---751760489979899895999987399999999956885899999998736886789999-
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999885417998999999999999988765776
Q gi|254780834|r 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 (648)
Q Consensus 403 ~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~~~~ 439 (648)
..++.|+|++.|..|+++++++++.....+
T Consensus 372 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (407)
T 2au3_A 372 -------YYLGFISDGVRRFALASEFHTKYKVPMEIL 401 (407)
T ss_dssp -------HHHTTCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred -------HHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -------999868999999999999999969899999