HHsearch results for GI: 254780834 and protein with PDBid: 2r6a_C
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=98.57 E-value=3e-06 Score=75.15 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53037999999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648)
Q Consensus 478 ~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648)
+....+|+.||++|+.+|+++..+.+.+ ..+|.++.++.|+..+...+..+...++..+...+.++.. ..+..+
T Consensus 4 p~~~~AEr~LL~~ml~~~~~~~~v~~~~-~~~F~~~~~r~I~~~i~~~~~~~~~~~~~~~~~~l~~e~~-~~~~~i---- 77 (143)
T 2r6a_C 4 PAFQNAERLLLAHMMRSRDVALVVQERI-GGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQ-PLASEL---- 77 (143)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHC-CSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCSSSH-HHHHHH----
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHH----
T ss_conf 9469999999999986989999998425-9870284789999999999872465308899999827776-689999----
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 543332025689988999999999999985899999999999999872412798999999999999999999
Q gi|254780834|r 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 (648)
Q Consensus 558 ~~~~~~~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~ 629 (648)
.......+... ..+.+++...++ ..+.+++.++..++.++...+|.+...+++.++.+++++|.
T Consensus 78 ---~~~~~~~~~~~----~~i~dyi~~ik~-~~l~~~i~~l~~~i~ea~~~gD~~~~~~l~~ei~~L~k~L~ 141 (143)
T 2r6a_C 78 ---SLLLIADDVSE----QELEDYIRHVLN-RPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKMLS 141 (143)
T ss_dssp ---TTSCCCSSCCH----HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHCCCCCCH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---99860268989----999999999999-99999999999999999888899999999999999999751