Query gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 648
No_of_seqs 198 out of 1905
Neff 7.9
Searched_HMMs 23785
Date Tue May 31 22:21:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780834.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2au3_A DNA primase; zinc ribbo 100.0 0 0 761.1 36.7 399 3-439 3-401 (407)
2 1dd9_A DNA primase, DNAG; topr 100.0 0 0 677.6 25.1 320 108-439 12-331 (338)
3 1d0q_A DNA primase; zinc-bindi 99.9 7.5E-24 3.2E-28 237.0 11.4 98 2-104 4-101 (103)
4 1nui_A DNA primase/helicase; z 99.9 2.6E-24 1.1E-28 241.3 8.8 237 38-375 10-254 (255)
5 1q57_A DNA primase/helicase; d 99.8 4.6E-19 1.9E-23 192.9 7.4 186 129-380 5-196 (503)
6 1t6t_1 Putative protein; struc 99.7 2.9E-17 1.2E-21 176.4 6.3 110 246-374 3-112 (118)
7 2fcj_A Small toprim domain pro 99.2 6.7E-12 2.8E-16 127.1 4.8 104 270-377 3-115 (119)
8 2r6a_C DNAG primase, helicase 98.6 3E-06 1.2E-10 75.1 13.9 138 478-629 4-141 (143)
9 2r5u_A Replicative DNA helicas 97.4 0.012 4.9E-07 42.1 14.1 66 481-546 31-96 (200)
10 3gxv_A Replicative DNA helicas 96.6 0.044 1.8E-06 36.8 11.4 64 482-545 12-75 (123)
11 2r6a_A DNAB helicase, replicat 96.6 0.075 3.2E-06 34.7 15.5 43 214-283 202-244 (454)
12 1b79_A DNAB helicase; hexamer, 96.4 0.064 2.7E-06 35.3 11.3 66 481-546 21-86 (119)
13 1t3w_A DNA primase; DNAG, DNA- 96.4 0.036 1.5E-06 37.6 10.0 107 484-602 18-125 (148)
14 2q6t_A DNAB replication FORK h 96.3 0.099 4.2E-06 33.6 17.2 29 214-260 199-227 (444)
15 3bgw_A DNAB-like replicative h 96.0 0.14 5.7E-06 32.3 12.3 42 214-283 196-237 (444)
16 1vdd_A Recombination protein R 69.8 4.7 0.0002 18.1 6.3 82 271-357 79-172 (228)
17 2hcm_A Dual specificity protei 68.9 3.4 0.00014 19.4 3.2 35 62-96 94-130 (164)
18 3nme_A Ptpkis1 protein, SEX4 g 67.2 3.1 0.00013 19.7 2.7 67 138-224 122-190 (294)
19 3ezz_A Dual specificity protei 65.6 3.4 0.00014 19.5 2.6 36 61-96 85-122 (144)
20 3k7a_M Transcription initiatio 65.4 1.8 7.4E-05 22.1 1.1 47 29-75 10-58 (345)
21 1rqg_A Methionyl-tRNA syntheta 64.6 5.8 0.00024 17.3 4.4 60 354-413 350-412 (722)
22 2r0b_A Serine/threonine/tyrosi 64.3 3.8 0.00016 19.0 2.7 20 75-94 110-129 (154)
23 2wgp_A Dual specificity protei 61.7 6.1 0.00026 17.1 3.3 14 283-296 44-57 (190)
24 3k1f_M Transcription initiatio 61.4 6.5 0.00027 16.9 3.5 42 39-80 20-63 (197)
25 2oud_A Dual specificity protei 61.0 4.8 0.0002 18.0 2.7 16 397-412 116-131 (177)
26 2img_A Dual specificity protei 59.6 5.3 0.00022 17.7 2.7 15 345-359 56-70 (151)
27 1dsq_A Nucleic acid binding pr 58.7 1.8 7.7E-05 21.9 0.2 11 63-73 4-14 (26)
28 3e3v_A Regulatory protein RECX 58.2 7.2 0.0003 16.4 3.8 52 495-548 49-100 (177)
29 3dfg_A Xcrecx, regulatory prot 58.1 7.2 0.0003 16.4 5.3 51 494-547 47-97 (162)
30 3f81_A Dual specificity protei 56.4 7.6 0.00032 16.2 3.1 13 284-296 47-59 (183)
31 2zkr_z 60S ribosomal protein L 56.3 6.2 0.00026 17.0 2.6 26 41-69 37-62 (92)
32 2nt2_A Protein phosphatase sli 55.6 5.7 0.00024 17.4 2.3 23 73-95 99-121 (145)
33 3ghg_A Fibrinogen alpha chain; 55.4 7.9 0.00033 16.1 5.9 25 354-378 34-58 (562)
34 2yzr_A Pyridoxal biosynthesis 54.9 4.7 0.0002 18.1 1.8 68 4-98 62-144 (330)
35 3e90_B NS3 protease; trypsin-l 54.2 5.6 0.00023 17.5 2.1 16 209-224 142-157 (198)
36 3lkw_A Fusion protein of nonst 53.3 5.8 0.00024 17.3 2.1 16 209-224 188-203 (236)
37 3cc2_Z 50S ribosomal protein L 53.2 7.4 0.00031 16.3 2.6 25 41-69 61-86 (116)
38 2fp7_B Polyprotein; flavivirus 52.9 5.9 0.00025 17.2 2.1 16 209-224 123-138 (172)
39 2ggv_B NS3, non-structural pro 52.4 6.4 0.00027 16.9 2.2 16 209-224 137-152 (185)
40 1nc8_A Nucleocapsid protein; H 52.2 3.8 0.00016 19.0 1.0 16 58-73 3-18 (29)
41 2vdw_A Vaccinia virus capping 51.9 5.7 0.00024 17.4 1.8 22 57-78 47-68 (302)
42 1s1i_9 L37A, YL35, 60S ribosom 51.4 6.7 0.00028 16.7 2.1 26 41-69 36-61 (91)
43 2kxo_A Cell division topologic 50.9 3.9 0.00016 18.9 0.9 23 3-27 35-57 (95)
44 2prx_A Thioesterase superfamil 50.8 2.6 0.00011 20.6 -0.1 10 61-70 15-24 (160)
45 1rxd_A Protein tyrosine phosph 50.8 7.6 0.00032 16.2 2.3 15 345-359 61-75 (159)
46 1ohe_A CDC14B, CDC14B2 phospha 50.8 9.1 0.00038 15.5 5.6 43 39-81 19-67 (348)
47 2pq5_A Dual specificity protei 50.3 9.3 0.00039 15.4 2.8 13 348-360 97-109 (205)
48 3d5l_A Regulatory protein RECX 50.1 9.3 0.00039 15.4 3.8 13 500-512 97-109 (221)
49 2k8d_A Peptide methionine sulf 49.9 4.7 0.0002 18.2 1.1 10 59-68 59-68 (151)
50 1wle_A Seryl-tRNA synthetase; 49.4 9.5 0.0004 15.3 11.1 15 86-100 50-64 (501)
51 1vq8_Z 50S ribosomal protein L 48.7 8.4 0.00035 15.8 2.3 25 41-69 28-53 (83)
52 3d72_A Vivid PAS protein VVD; 48.3 9.8 0.00041 15.2 2.7 17 206-222 129-145 (149)
53 3ea0_A ATPase, para family; al 48.0 9.9 0.00042 15.2 6.4 49 291-340 119-167 (245)
54 2fom_B Polyprotein; flavivirus 47.9 7.6 0.00032 16.2 2.0 20 204-223 62-82 (185)
55 2odx_A Cytochrome C oxidase po 47.9 8.3 0.00035 15.9 2.2 32 37-69 31-64 (80)
56 2dq0_A Seryl-tRNA synthetase; 46.7 10 0.00043 15.0 9.2 11 484-494 411-421 (455)
57 3ib6_A Uncharacterized protein 45.8 5.6 0.00023 17.5 1.0 24 272-295 115-140 (189)
58 1ef4_A Subunit N, DNA-directed 45.8 11 0.00045 14.9 2.7 17 63-79 5-22 (55)
59 1xri_A AT1G05000; structural g 44.5 9.6 0.0004 15.3 2.1 25 301-325 20-44 (151)
60 1cu1_A Protein (protease/helic 44.1 10 0.00044 15.0 2.2 28 198-225 145-172 (645)
61 1ses_A Seryl-tRNA synthetase; 43.4 11 0.00048 14.6 9.5 11 484-494 385-395 (421)
62 3d45_A Poly(A)-specific ribonu 43.2 5.3 0.00022 17.7 0.6 57 247-317 261-317 (507)
63 1zcl_A Protein tyrosine phosph 43.0 11 0.00047 14.7 2.2 19 342-360 79-97 (180)
64 2l1u_A MSRB2, methionine-R-sul 43.0 10 0.00042 15.1 2.0 11 59-69 35-45 (143)
65 3hcj_A MSRB, peptide methionin 42.7 10 0.00044 15.0 2.0 10 59-68 48-57 (154)
66 2g6z_A Dual specificity protei 42.7 12 0.00049 14.5 3.4 11 285-295 26-36 (211)
67 1x4t_A Hypothetical protein LO 42.7 12 0.00049 14.5 2.9 33 404-436 33-65 (92)
68 2i6j_A Ssoptp, sulfolobus solf 42.6 11 0.00046 14.8 2.1 64 294-360 8-74 (161)
69 2gag_B Heterotetrameric sarcos 42.4 11 0.00045 14.9 2.0 12 89-100 89-100 (405)
70 3bgv_A MRNA CAP guanine-N7 met 42.2 8.8 0.00037 15.6 1.6 17 62-78 38-54 (313)
71 1tv8_A MOAA, molybdenum cofact 41.9 12 0.0005 14.4 4.1 80 273-355 76-171 (340)
72 3cxk_A Methionine-R-sulfoxide 41.6 6.7 0.00028 16.7 0.9 13 148-160 60-72 (164)
73 2nv1_A Pyridoxal biosynthesis 41.6 6.5 0.00027 16.9 0.8 11 84-94 134-144 (305)
74 1yn9_A BVP, polynucleotide 5'- 40.4 10 0.00043 15.0 1.7 10 214-223 19-28 (169)
75 2hjn_A MPS1 binder 1, maintena 39.9 11 0.00048 14.6 1.9 26 349-374 65-90 (236)
76 1ffy_A Isoleucyl-tRNA syntheta 39.8 10 0.00044 15.0 1.6 28 354-381 601-628 (917)
77 2px2_A Genome polyprotein [con 39.5 13 0.00054 14.1 2.6 15 331-345 161-175 (269)
78 2yx0_A Radical SAM enzyme; pre 39.4 13 0.00054 14.1 6.2 99 272-380 151-266 (342)
79 2waq_N DNA-directed RNA polyme 38.8 13 0.00055 14.0 2.5 17 63-79 6-23 (66)
80 3jyw_9 60S ribosomal protein L 38.1 9.9 0.00042 15.2 1.3 26 41-69 27-52 (72)
81 2g29_A Nitrate transport prote 37.5 14 0.00057 13.9 4.3 17 360-377 246-262 (417)
82 1ffk_W Ribosomal protein L37AE 37.4 12 0.00052 14.2 1.7 25 41-69 28-53 (73)
83 1p0z_A Sensor kinase CITA; tra 36.4 14 0.00059 13.8 2.8 17 205-221 103-119 (131)
84 3d5a_X RF1, peptide chain rele 36.0 14 0.0006 13.7 5.8 15 399-413 260-274 (354)
85 1dih_A Dihydrodipicolinate red 36.0 14 0.0006 13.7 5.1 60 278-339 83-144 (273)
86 2e0t_A Dual specificity phosph 35.9 14 0.0006 13.7 3.6 25 73-97 103-127 (151)
87 2kao_A Methionine-R-sulfoxide 35.6 14 0.0006 13.7 1.8 12 58-69 17-28 (124)
88 3f62_A Interleukin 18 binding 35.4 11 0.00044 14.9 1.1 24 48-71 6-29 (109)
89 2c46_A MRNA capping enzyme; gu 35.4 14 0.00058 13.8 1.7 40 386-432 160-199 (241)
90 3l48_A Outer membrane usher pr 34.7 14 0.00061 13.7 1.7 24 205-228 9-32 (94)
91 1twf_J DNA-directed RNA polyme 34.5 15 0.00063 13.5 3.2 16 63-78 6-22 (70)
92 1ev0_A MINE; topological speci 34.4 8.1 0.00034 16.0 0.4 28 3-32 4-31 (58)
93 3cwf_A Alkaline phosphatase sy 34.3 9.5 0.0004 15.3 0.7 45 206-251 49-96 (122)
94 1wrm_A Dual specificity phosph 33.8 15 0.00064 13.4 6.4 24 73-96 101-124 (165)
95 3dlo_A Universal stress protei 33.7 15 0.00064 13.4 4.9 40 314-356 24-65 (155)
96 3emu_A Leucine rich repeat and 33.7 15 0.00064 13.4 4.3 15 281-295 26-40 (161)
97 1dzl_A Late major capsid prote 33.6 15 0.00065 13.4 1.7 24 198-221 90-116 (505)
98 2b3t_B RF-1, peptide chain rel 33.2 16 0.00065 13.4 3.9 16 399-414 265-280 (360)
99 2d1p_B TUSC, hypothetical UPF0 33.2 16 0.00065 13.4 5.0 42 316-357 3-44 (119)
100 2q05_A Late protein H1, dual s 32.9 16 0.00066 13.3 3.3 49 269-320 11-59 (195)
101 1wii_A Hypothetical UPF0222 pr 32.2 16 0.00068 13.2 2.8 29 42-70 25-56 (85)
102 3can_A Pyruvate-formate lyase- 32.2 16 0.00068 13.2 7.6 75 286-362 28-112 (182)
103 1zr9_A Zinc finger protein 593 31.6 15 0.00064 13.4 1.4 39 57-95 46-85 (124)
104 1gqe_A Release factor 2, RF2; 31.5 16 0.00069 13.1 11.9 15 399-413 282-296 (365)
105 1pj3_A NAD-dependent malic enz 31.2 17 0.0007 13.1 2.5 51 305-356 241-293 (564)
106 1byw_A Protein (human ERG pota 30.8 17 0.00071 13.0 2.5 19 206-224 86-104 (110)
107 1z0k_B FYVE-finger-containing 30.4 17 0.00072 13.0 6.1 43 591-633 25-67 (69)
108 2wv9_A Flavivirin protease NS2 30.1 17 0.00072 13.0 2.2 16 209-224 192-207 (673)
109 1v54_F VI, cytochrome C oxidas 30.1 17 0.00072 12.9 3.1 16 52-68 71-86 (98)
110 2nx2_A Hypothetical protein YP 30.0 17 0.00073 12.9 5.6 44 311-362 128-172 (181)
111 1qtq_A GLNRS, protein (glutami 29.9 14 0.00061 13.6 1.1 19 84-102 76-94 (553)
112 1y56_B Sarcosine oxidase; dehy 29.8 17 0.00073 12.9 2.7 25 271-295 194-218 (382)
113 3h99_A Methionyl-tRNA syntheta 29.5 18 0.00074 12.9 5.1 24 354-377 351-374 (560)
114 3ff5_A PEX14P, peroxisomal bio 29.1 18 0.00075 12.8 3.3 37 120-156 12-49 (54)
115 3e0m_A Peptide methionine sulf 29.0 18 0.00075 12.8 1.4 14 81-94 61-74 (313)
116 1svp_A Sindbis virus capsid pr 29.0 18 0.00075 12.8 2.4 21 207-227 10-34 (161)
117 3iyj_F Major capsid protein L1 28.9 16 0.00066 13.3 1.1 11 56-66 88-100 (495)
118 2dum_A Hypothetical protein PH 28.7 18 0.00076 12.8 2.3 37 314-353 5-41 (170)
119 1ep5_B Capsid protein C, coat 28.7 18 0.00076 12.8 2.4 11 209-219 111-121 (157)
120 2dq3_A Seryl-tRNA synthetase; 28.3 18 0.00077 12.7 5.5 11 484-494 390-400 (425)
121 2esb_A Dual specificity protei 28.3 18 0.00077 12.7 4.3 15 282-296 37-51 (188)
122 1vq8_I 50S ribosomal protein L 28.0 16 0.00066 13.3 1.0 62 301-376 95-157 (162)
123 3ijp_A DHPR, dihydrodipicolina 28.0 19 0.00078 12.7 4.4 71 279-351 100-172 (288)
124 2x1l_A Methionyl-tRNA syntheta 27.9 19 0.00078 12.7 4.6 26 355-380 317-342 (524)
125 1dl6_A Transcription factor II 27.6 19 0.00079 12.6 2.5 32 42-75 13-46 (58)
126 1vcp_A Semliki forest virus ca 27.3 19 0.0008 12.6 2.4 12 209-220 104-115 (149)
127 1tq8_A Hypothetical protein RV 27.2 19 0.0008 12.6 3.1 36 315-353 18-53 (163)
128 1vd4_A Transcription initiatio 27.0 19 0.0008 12.5 1.8 31 38-70 14-48 (62)
129 1gax_A Valrs, valyl-tRNA synth 26.9 19 0.00081 12.5 2.9 28 354-381 534-562 (862)
130 1zzw_A Dual specificity protei 26.8 19 0.00081 12.5 3.7 22 74-95 102-123 (149)
131 2w84_A Peroxisomal membrane pr 26.3 20 0.00082 12.4 2.6 49 121-169 18-69 (70)
132 2gj3_A Nitrogen fixation regul 25.9 20 0.00084 12.4 2.7 21 206-226 95-115 (120)
133 1zbt_A RF-1, peptide chain rel 25.8 20 0.00084 12.4 3.2 12 345-356 254-265 (371)
134 1yzm_A FYVE-finger-containing 25.7 20 0.00084 12.3 6.8 44 590-633 6-49 (51)
135 1taf_B TFIID TBP associated fa 25.6 20 0.00085 12.3 5.3 49 86-134 9-57 (70)
136 3nwr_A A rubisco-like protein; 25.5 20 0.00085 12.3 4.0 13 201-213 91-103 (432)
137 3hgm_A Universal stress protei 25.2 20 0.00086 12.3 3.9 36 315-353 3-38 (147)
138 1wz2_A Leucyl-tRNA synthetase; 25.2 20 0.00086 12.3 3.1 27 354-380 656-683 (967)
139 2ysa_A Retinoblastoma-binding 25.0 12 0.00048 14.6 -0.2 15 61-75 7-21 (55)
140 3fnr_A Arginyl-tRNA synthetase 24.9 21 0.00087 12.2 9.0 121 357-528 294-416 (464)
141 3mhs_C SAGA-associated factor 24.8 6.7 0.00028 16.7 -1.4 70 6-80 14-89 (99)
142 2a1r_A Poly(A)-specific ribonu 24.7 18 0.00075 12.8 0.8 57 248-318 267-323 (430)
143 2dis_A Unnamed protein product 24.5 21 0.00088 12.2 2.0 67 295-361 13-97 (109)
144 3bfv_A CAPA1, CAPB2, membrane 24.3 21 0.00089 12.1 4.1 59 303-365 204-262 (271)
145 3lyx_A Sensory BOX/ggdef domai 24.1 21 0.00089 12.1 3.6 21 206-226 97-117 (124)
146 3c38_A Autoinducer 2 sensor ki 24.0 21 0.0009 12.1 1.3 21 208-228 141-164 (270)
147 1ri5_A MRNA capping enzyme; me 23.7 22 0.00091 12.0 1.9 13 64-76 70-82 (298)
148 1z81_A Cyclophilin; structural 23.5 22 0.00091 12.0 1.6 14 275-288 192-206 (229)
149 3luq_A Sensor protein; PAS, hi 23.5 22 0.00091 12.0 2.7 20 205-224 91-110 (114)
150 1exn_A 5'-exonuclease, 5'-nucl 23.5 22 0.00092 12.0 2.5 58 270-334 17-75 (290)
151 3bbo_G Ribosomal protein L4; l 23.4 20 0.00085 12.3 0.8 54 301-366 185-243 (293)
152 2d69_A Ribulose bisphosphate c 23.4 22 0.00092 12.0 3.6 25 159-183 17-42 (430)
153 2z08_A Universal stress protei 23.4 22 0.00092 12.0 4.0 36 315-353 3-38 (137)
154 1ydm_A Hypothetical protein YQ 23.2 22 0.00092 12.0 1.3 23 204-226 117-141 (187)
155 2oxt_A Nucleoside-2'-O-methylt 23.2 22 0.00093 12.0 2.0 28 332-362 163-194 (265)
156 1yz4_A DUSP15, dual specificit 23.0 22 0.00093 11.9 5.7 36 61-96 88-125 (160)
157 2l02_A Uncharacterized protein 22.8 12 0.00052 14.3 -0.4 20 48-67 56-75 (82)
158 2whx_A Serine protease/ntpase/ 22.6 22 0.00095 11.9 2.2 53 271-325 356-412 (618)
159 2p8j_A S-adenosylmethionine-de 22.4 23 0.00095 11.8 1.0 21 58-79 24-44 (209)
160 2hue_C Histone H4; mini beta s 22.3 23 0.00096 11.8 6.4 66 81-147 9-74 (84)
161 3f2k_A Histone-lysine N-methyl 22.2 23 0.00096 11.8 7.6 93 315-434 123-216 (226)
162 1i7d_A DNA topoisomerase III; 22.1 23 0.00097 11.8 3.2 13 481-493 490-502 (659)
163 1j72_A Macrophage capping prot 22.0 23 0.00097 11.8 2.8 51 317-367 172-224 (347)
164 1ile_A Ilers, isoleucyl-tRNA s 21.8 23 0.00097 11.8 3.1 25 354-378 597-621 (821)
165 3od1_A ATP phosphoribosyltrans 21.6 23 0.00098 11.7 6.6 49 168-224 251-300 (400)
166 3hot_A Transposable element ma 21.5 23 0.00099 11.7 9.6 93 314-433 241-334 (345)
167 2k4q_A Major tail protein V; G 21.5 24 0.00099 11.7 4.9 35 316-356 84-118 (156)
168 1jnr_B Adenylylsulfate reducta 21.4 22 0.00093 11.9 0.7 21 205-225 85-105 (150)
169 2zkr_i 60S ribosomal protein L 21.2 24 0.001 11.7 1.6 52 301-366 103-155 (165)
170 1kxf_A Sindbis virus capsid pr 21.1 24 0.001 11.6 2.2 10 206-215 114-123 (264)
171 1h7b_A Anaerobic ribonucleotid 21.1 24 0.001 11.6 0.8 12 290-301 280-291 (605)
172 1f7u_A Arginyl-tRNA synthetase 21.1 24 0.001 11.6 9.8 27 481-507 521-547 (607)
173 2oem_A 2,3-diketo-5-methylthio 20.9 24 0.001 11.6 3.5 10 354-363 148-158 (413)
174 1m93_C Serine proteinase inhib 20.8 24 0.001 11.6 2.8 23 206-229 18-40 (41)
175 2z67_A O-phosphoseryl-tRNA(SEC 20.6 24 0.001 11.6 4.9 62 292-362 151-219 (456)
176 2i50_A Ubiquitin carboxyl-term 20.4 25 0.001 11.5 2.6 18 51-68 86-103 (126)
177 3eul_A Possible nitrate/nitrit 20.4 25 0.001 11.5 6.1 102 273-383 17-124 (152)
No 1
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transferase; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=100.00 E-value=0 Score=761.12 Aligned_cols=399 Identities=34% Similarity=0.590 Sum_probs=354.9
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 78889999987488888754122210158877777557534588885878798178974671368888789899898859
Q gi|254780834|r 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 (648)
Q Consensus 3 i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~ 82 (648)
+| +.||+|++++||||||++||+|+|+|+| |+|+||||+||||||+|||+||+|||||||+|||+|+|||+++|
T Consensus 3 ~~-~~i~~ik~~~~I~~v~~~~~~l~~~G~~-----~~~~CPfH~dktPSf~V~~~k~~~~CF~Cg~~Gd~i~fv~~~~~ 76 (407)
T 2au3_A 3 MS-SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYED 76 (407)
T ss_dssp CC-CHHHHHHHHCCHHHHHHHHSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHHHT
T ss_pred CC-HHHHHHHHHCCHHHHHHHCCEEEECCCE-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHC
T ss_conf 71-7999999849999998506228986984-----79879498998998599889998996789999789999999819
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCC
Q ss_conf 99799999999981885877682036777889999999999999999973267775789999850688535101244225
Q gi|254780834|r 83 CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 (648)
Q Consensus 83 ~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~a 162 (648)
++|+||+++||+++||+++....... .....+++.+..+|+..+.. +..+++|+..||++++++++|.+||+
T Consensus 77 ~sf~eA~~~l~~~~gi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~yl~~r~l~~~~i~~f~~g~~ 148 (407)
T 2au3_A 77 ISYFEAALELAKRYGKKLDLEKISKD------EKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYA 148 (407)
T ss_dssp CCHHHHHHHHHHHHTCCCCTTSCCHH------HHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTCCHHHHHHTTCEEC
T ss_pred CCHHHHHHHHHHHHCCCCHHCCCHHH------HHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 98899999999981976300111016------78999999999999997513--89999999867999999986223577
Q ss_pred CCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCC
Q ss_conf 67741034554205997345232012100346541000016716888970778588850100146553001038767653
Q gi|254780834|r 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 (648)
Q Consensus 163 p~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if 242 (648)
|..|..+.... ..+...+ ....++......|. +||+|++||||||+|.+|++|||+||.+.++..|||+|||+|++|
T Consensus 149 ~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~d~f~~ri~fPi~~~~G~~v~f~~R~~~~~~~~Kylns~~~~~f 225 (407)
T 2au3_A 149 PSSEALVKVLK-ENDLLEA-YLETKNLLSPTKGV-YRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVF 225 (407)
T ss_dssp CCHHHHHHHHH-HHTCHHH-HHTTTCEECSSTTC-CEETTTTEEEEEEECTTSCEEEEEEEECSCCSSCSEEECCCCSSC
T ss_pred CCCHHHHHHHH-HCCHHHH-HHHHCCCCCCCCCC-CEECCCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 86247788875-0010688-87750661037895-112256734500450079389998666478887654467653001
Q ss_pred CCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEEC
Q ss_conf 52101108178888643310000235678708997143889998743554211343213662678988512681899617
Q gi|254780834|r 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322 (648)
Q Consensus 243 ~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fD 322 (648)
+|+..|||++.+++.+++. +.+||||||||||++|++|++|+||++||++|.+|+..|+|++++||+|||
T Consensus 226 ~K~~~l~~~~~~~~~~~~~----------~~viivEG~~D~l~l~~~Gi~n~va~~Gt~lt~~~~~~L~~~~~~vvl~~D 295 (407)
T 2au3_A 226 KKGENLFGLYEAKEYIKEE----------GFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYD 295 (407)
T ss_dssp CGGGCEETHHHHHHHHHHH----------TCEEECSSHHHHHHHHHTTCCSEEEESSSSCCHHHHHHHHTTCSEEEEECC
T ss_pred CCCCCCHHHHHHHHHHCCC----------CCCEEECCCCHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 5530000069999863025----------432530363039999866976457415776838999998611671588458
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 88662257778888887775369730675257888888997203668899886414992799999998530233145799
Q gi|254780834|r 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 (648)
Q Consensus 323 gD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka 402 (648)
+|+||++|+.|+++.+ ++.|++++|+.||+|+|||||++++|.++|.+++++|.+++||+|+.+.++.+..+++.+
T Consensus 296 ~D~AG~~A~~k~~~~l---~~~g~~v~vv~lP~gkDpdd~l~~~g~~~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~- 371 (407)
T 2au3_A 296 GDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFR- 371 (407)
T ss_dssp SSHHHHHHHHHHHHHH---HHTTCEEEEECCCTTCCHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHGGGCHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHH---HHCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHH-
T ss_conf 8699999999999998---751760489979899895999987399999999956885899999998736886789999-
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999885417998999999999999988765776
Q gi|254780834|r 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 (648)
Q Consensus 403 ~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~~~~ 439 (648)
..++.|+|++.|..|+++++++++.....+
T Consensus 372 -------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 401 (407)
T 2au3_A 372 -------YYLGFISDGVRRFALASEFHTKYKVPMEIL 401 (407)
T ss_dssp -------HHHTTCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred -------HHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf -------999868999999999999999969899999
No 2
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=100.00 E-value=0 Score=677.60 Aligned_cols=320 Identities=35% Similarity=0.650 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHC
Q ss_conf 67778899999999999999999732677757899998506885351012442256774103455420599734523201
Q gi|254780834|r 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 (648)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~g 187 (648)
.....+|..|+++++.|+.|||.+|+++.++.|++||++||+++++|++|+|||||++|+.|+++|.++||+.+.+.++|
T Consensus 12 ~~~~~~r~~l~~i~~~a~~~y~~~L~~~~~~~a~~YL~~Rgl~~~~i~~f~lGyap~~~~~l~~~l~~~~~~~~~l~~~g 91 (338)
T 1dd9_A 12 SGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAG 91 (338)
T ss_dssp --------CHHHHHHHHHHHHHHHHTSGGGHHHHHHHHHTTCCHHHHHHHTCEEECSSSCHHHHHHCSSHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHHCC
T ss_conf 87688999999999999999999967985089999999779999999875245266458999999975799889999778
Q ss_pred CCEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCC
Q ss_conf 21003465410000167168889707785888501001465530010387676535210110817888864331000023
Q gi|254780834|r 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVR 267 (648)
Q Consensus 188 l~~~~~~~~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~ 267 (648)
|+..+++|. +||+|+|||||||+|.+|+|||||||++++ +.|||+|||||++|+|+++|||++.|++.|++
T Consensus 92 L~~~~~~g~-~~d~F~~Ri~fPI~d~~g~vigF~gR~~~~-~~~KYlNs~et~~f~K~~~lyg~~~ak~~i~~------- 162 (338)
T 1dd9_A 92 MLVTNDQGR-SYDRFRERVMFPIRDKRGRVIGFGGRVLGN-DTPKYLNSPETDIFHKGRQLYGLYEAQQDNAE------- 162 (338)
T ss_dssp SEEEC---C-EEESCCSEEEEEEECTTSCEEEEEEEESSS-CSCSEEECCCCSSCCTTTCCBTHHHHHHTCSS-------
T ss_pred CEEECCCCC-CCCCCCCEEEEEEECCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHCCHHHHHHHHCC-------
T ss_conf 855646776-342226637998872789789983022467-88776079876666643022048999875225-------
Q ss_pred CCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 56787089971438899987435542113432136626789885126818996178866225777888888777536973
Q gi|254780834|r 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 (648)
Q Consensus 268 ~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~ 347 (648)
.+.+||||||||||+|||+||+||||+||||||++|+++|+|++++|++|||||+||++|+.|+++++++....|+.
T Consensus 163 ---~~~viivEG~~Dvi~l~q~Gi~n~VA~~GTa~t~~~~~~l~r~~~~i~l~~D~D~AG~~A~~r~~~~~l~~~~~g~~ 239 (338)
T 1dd9_A 163 ---PNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ 239 (338)
T ss_dssp ---CSCEEEESSHHHHHHHHHTTCCCEEECCC-CCCHHHHHHHHHHCSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCE
T ss_pred ---CCCEEEEECHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf ---67279983579999998704224555545475458899876227856998457654304577489997665048975
Q ss_pred EEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 06752578888889972036688998864149927999999985302331457999999999885417998999999999
Q gi|254780834|r 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 (648)
Q Consensus 348 v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~ 427 (648)
|+|+.||+|+|||||++++|+++|.+++++|.++++|+|+.+..+.++++|++++.+++++.++|+.|+|+++|++|+++
T Consensus 240 v~v~~lp~g~DPDe~~~~~G~~~~~~ll~~a~~~~eF~i~~l~~~~d~~spe~k~~~~~~i~~~I~~I~d~~~r~~yi~~ 319 (338)
T 1dd9_A 240 LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 319 (338)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEHHHHHHHHHGGGCCTTSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99997999979799975417999999985279899999999985589999999999999999999968999999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999988765776
Q gi|254780834|r 428 IRDRLQQLFQKY 439 (648)
Q Consensus 428 la~~L~~~~~~~ 439 (648)
++++++......
T Consensus 320 la~~l~i~e~~~ 331 (338)
T 1dd9_A 320 LGNKLGILDDSQ 331 (338)
T ss_dssp HHHHHTCSCGGG
T ss_pred HHHHHCCCCHHH
T ss_conf 999848992999
No 3
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=99.91 E-value=7.5e-24 Score=236.96 Aligned_cols=98 Identities=40% Similarity=0.785 Sum_probs=94.9
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHC
Q ss_conf 87888999998748888875412221015887777755753458888587879817897467136888878989989885
Q gi|254780834|r 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 2 ~i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~ 81 (648)
|||++.|++||+++||++|+++|++|+++|++ |+++||||+|+||||+|+++++.||||+||+|||+|+|||+++
T Consensus 4 ri~~~~i~~ik~~~~i~d~l~~~~~lk~~G~~-----~~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd~i~~v~~~~ 78 (103)
T 1d0q_A 4 RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDIE 78 (103)
T ss_dssp TSCHHHHHHHHHHCCHHHHHTTTSCCEEETTE-----EEECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCHHHHHHCCCCEEECCCC-----EEEECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 78999999999859999999637775877983-----5888988899999879973887799888799988999999995
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99979999999998188587768
Q gi|254780834|r 82 GCSFIESVQRLAAIAGVPLPVVD 104 (648)
Q Consensus 82 ~~~f~ea~~~la~~~gi~~~~~~ 104 (648)
|++|.||+++||+++||++|..+
T Consensus 79 ~~sf~eA~~~La~~~gi~~~~~~ 101 (103)
T 1d0q_A 79 GIPFVEAAKRLAAKAGVDLSVYE 101 (103)
T ss_dssp TCCHHHHHHHHHHHHTCCCGGGC
T ss_pred CCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 97999999999999599877657
No 4
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=99.91 E-value=2.6e-24 Score=241.25 Aligned_cols=237 Identities=14% Similarity=0.099 Sum_probs=161.0
Q ss_pred CEE--EECCCCCCCCCCEEEECCCCEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 557--534588885878798178974671368888789899898859997999999999818858776820367778899
Q gi|254780834|r 38 DYW--ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 (648)
Q Consensus 38 ~~~--~~cPfh~ektpsf~v~~~~~~~~cf~c~~~gd~~~f~~~~~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~ 115 (648)
.|. +.||....+. .|+|+.+ +.||||+||.++....+.+.......+ ...........
T Consensus 10 ~~~~h~pCP~Cg~~d-~~~~~~d-g~~~C~~Cg~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~------ 69 (255)
T 1nui_A 10 VFLYHIPCDNCGSSD-GNSLFSD-GHTFCYVCEKWTAGNEDTKERASKRKP------------SGGKPGTYNVW------ 69 (255)
T ss_dssp CEEEEECCSSSCCSS-CEEEETT-SCEEETTTCCEEC----CHHHHHTTCC------------CCBSTTCBCCB------
T ss_pred EEECCCCCCCCCCCC-CCEEEEC-CCEEECCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCC------
T ss_conf 756768999898999-9879529-988976799844787633332222444------------43432223323------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCC
Q ss_conf 99999999999999973267775789999850688535101244225677410345542059973452320121003465
Q gi|254780834|r 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 (648)
Q Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~ 195 (648)
.+. .......||.+|||+.++++.|++|+...+
T Consensus 70 ---------------~~~--~~~~~~~~L~~RgIs~e~~~~~~~~~~~~~------------------------------ 102 (255)
T 1nui_A 70 ---------------NFG--ESNGRYSALTARGISKETCQKAGYWIAKVD------------------------------ 102 (255)
T ss_dssp ---------------CGG--GTTCBCCCBGGGTBCHHHHHHHTEEEEEET------------------------------
T ss_pred ---------------CCC--CCCCCCHHHHHCCCCHHHHHHCEEEEEECC------------------------------
T ss_conf ---------------333--234430027577999899755708999659------------------------------
Q ss_pred CCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEE
Q ss_conf 41000016716888970778588850100146553001038767653521011081788886433100002356787089
Q gi|254780834|r 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275 (648)
Q Consensus 196 ~~~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i 275 (648)
...+++||++|..|++++|.+|.+++. .++..++ +...+|+.+.+. ..++++
T Consensus 103 ------~~~~~~~~~~~~~g~~~~~~~r~~~~k--~~~~~~~------~~~~~~~~~~~~--------------~~~~v~ 154 (255)
T 1nui_A 103 ------GVMYQVADYRDQNGNIVSQKVRDKDKN--FKTTGSH------KSDALFGKHLWN--------------GGKKIV 154 (255)
T ss_dssp ------TEEEEEEEEECTTSCEEEEEEECTTCC--CEEEECC------CTTCCTTGGGCC--------------CBSCCE
T ss_pred ------CCEEEEEEEECCCCCEEEEEEECCCCC--CEECCCC------CCCCCCHHHHCC--------------CCCEEE
T ss_conf ------904899621379997864575013676--3154888------767442012126--------------887799
Q ss_pred EECCHHHHHHHHHCCCCCCHHHH---HCCCCHHHHHH---HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 97143889998743554211343---21366267898---8512681899617886622577788888877753697306
Q gi|254780834|r 276 LVEGYMDVLSLCQAGVQNVVSSL---GTALTEYQLRL---LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 (648)
Q Consensus 276 ~vEGy~Dvi~l~~~G~~n~va~~---Gtalt~~~~~~---l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~ 349 (648)
||||+||+++++|+|+.++++.. |++-+..++.. +....++||||||+|+||++|+.|+++++ . ...++
T Consensus 155 I~EGe~Dalsl~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~Iii~~DnD~aG~~aa~k~~~~l----~-~~~~~ 229 (255)
T 1nui_A 155 VTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVL----P-AGKVR 229 (255)
T ss_dssp EESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHS----C-TTTEE
T ss_pred EEECHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC----C-CCCEE
T ss_conf 991468899999861268851024655310023325666653155659996799999999999999974----6-78799
Q ss_pred EEECCCCCCHHHHHHCCCHHHHHHHH
Q ss_conf 75257888888997203668899886
Q gi|254780834|r 350 FVLLSRGEDPDSFIRCYGKTAFEKLI 375 (648)
Q Consensus 350 vv~LP~G~DPDe~ir~~G~eaf~~ll 375 (648)
++.+| ++||+|+++++|.++|.+.+
T Consensus 230 iv~~p-~KD~nd~l~~~~~~~~~~~i 254 (255)
T 1nui_A 230 VAVLP-CKDANECHLNGHDREIMEQV 254 (255)
T ss_dssp ECCCS-SSSHHHHHTTTTHHHHHHHH
T ss_pred EEECC-CCCHHHHHHCCCHHHHHHHH
T ss_conf 96189-87989998829999999965
No 5
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.77 E-value=4.6e-19 Score=192.92 Aligned_cols=186 Identities=17% Similarity=0.146 Sum_probs=139.0
Q ss_pred HHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEE
Q ss_conf 99732677757899998506885351012442256774103455420599734523201210034654100001671688
Q gi|254780834|r 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 (648)
Q Consensus 129 ~~~l~~~~~~~a~~yl~~Rg~~~~~~~~f~lG~ap~~~~~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~f 208 (648)
.++|..+.|. ..||.+|||+.+|+++|++|+... +|. .+++|
T Consensus 5 ~~~~~~~~~~--~~~L~~RgI~~~~~~~~~~~~~~~-----------------------------~~~-------~~~~~ 46 (503)
T 1q57_A 5 VWNFGESNGR--YSALTARGISKETCQKAGYWIAKV-----------------------------DGV-------MYQVA 46 (503)
T ss_dssp CCCBTTBCCB--CCCBTTTTBCHHHHHHHTEEECCB-----------------------------TTB-------CEEEE
T ss_pred ECCCCCCCCC--HHHHHHCCCCHHHHHHCCCEEEEC-----------------------------CCC-------EEEEE
T ss_conf 1345556657--103754888999999759168702-----------------------------892-------69997
Q ss_pred EEEECCCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 89707785888501001465530010387676535210110817888864331000023567870899714388999874
Q gi|254780834|r 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~ 288 (648)
|++|..|+++||..|..++ ..||.+++ |+..|||++.+. ..+.++||||.|||+|++|
T Consensus 47 ~~~~~~G~~~~~~~R~~~k--~~~~~~~~------~~~~l~g~~~~~--------------~~~~v~i~EGe~Dals~~~ 104 (503)
T 1q57_A 47 DYRDQNGNIVSQKVRDKDK--NFKTTGSH------KSDALFGKHLWN--------------GGKKIVVTEGEIDMLTVME 104 (503)
T ss_dssp EEECTTSCEEEEEEEETTT--EEEEEECC------CTTCEETGGGCS--------------SEEEEEEESSHHHHHHHTT
T ss_pred EEECCCCCEEEEEEECCCC--CEEEECCC------CCCCCCCCEECC--------------CCCEEEEECCHHHHHHHHH
T ss_conf 2688699799999989999--86780799------876212201047--------------9998999886799999999
Q ss_pred CCCCCCHHHHHCCCCHHHHHHHHHC------CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 3554211343213662678988512------6818996178866225777888888777536973067525788888899
Q gi|254780834|r 289 AGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 (648)
Q Consensus 289 ~G~~n~va~~Gtalt~~~~~~l~r~------~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ 362 (648)
+|..+.++.+.++-+....+.+++. .++||||||+|+||++|+.+...++ ....++++.+| ++||.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~D~D~~G~~~~~~~~~~~-----~~~~~~~~~~~-~kd~~~~ 178 (503)
T 1q57_A 105 LQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVL-----PAGKVRVAVLP-CKDANEC 178 (503)
T ss_dssp TTTTCSCEEEESSTTTTHHHHHHTTHHHHHTEEEEEEECCSSHHHHHHHHHHHHHS-----CGGGEEECCCS-SSSHHHH
T ss_pred HCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHC-----CCCEEEEEECC-CCCCHHH
T ss_conf 64888750215753124688999989871688989996289989999999999755-----77607998666-6683155
Q ss_pred HHCCCHHHHHHHHHHCCC
Q ss_conf 720366889988641499
Q gi|254780834|r 363 IRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 363 ir~~G~eaf~~ll~~A~~ 380 (648)
+...+.++....+.++.+
T Consensus 179 ~~~~~~~~~~~~~~~a~~ 196 (503)
T 1q57_A 179 HLNGHDREIMEQVWNAGP 196 (503)
T ss_dssp HTTSCHHHHHHHHTTCCC
T ss_pred HHHCCHHHHHHHHHHHHH
T ss_conf 663130677899997442
No 6
>1t6t_1 Putative protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.80A {Aquifex aeolicus VF5} SCOP: c.136.1.1
Probab=99.68 E-value=2.9e-17 Score=176.44 Aligned_cols=110 Identities=26% Similarity=0.344 Sum_probs=97.1
Q ss_pred HHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 01108178888643310000235678708997143889998743554211343213662678988512681899617886
Q gi|254780834|r 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 (648)
Q Consensus 246 ~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~ 325 (648)
+.+|+|+.+.+.+++. +.+.+|||||||||++||++||+|+||++||++|+ |+..+++...+||+|||+|+
T Consensus 3 ~~~~~l~e~~~~ir~~--------~~~~viiVEG~~D~~aL~~~Gi~n~va~~Gt~~~~-~~~~l~~~~~~Vil~~D~D~ 73 (118)
T 1t6t_1 3 KEPRNLSEWIKELKKA--------SREAVILVEGKNDKKALSKFSIKNVIDLSGKRYAD-VVDMLEGKWEKVILLFDLDT 73 (118)
T ss_dssp --CCSHHHHHHHHHHH--------TTTSEEEESSHHHHHHHHTTTCCCEEECTTSCHHH-HHHHHTTTCSEEEECCCSSH
T ss_pred CCHHHHHHHHHHHHHC--------CCCCEEEECCHHHHHHHHHCCCCHHHHCCCCCHHH-HHHHHHHCCCEEEEEECCCH
T ss_conf 3224189999999965--------89978997389999999981652323016865599-99999864893899867888
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 6225777888888777536973067525788888899720366889988
Q gi|254780834|r 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 326 AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
||++|+.|..+.+. ..|+.|. .|||+++++.|...++++
T Consensus 74 aG~~~~~k~~~~L~---~~g~~v~-------~d~~~~l~~~g~~~ieel 112 (118)
T 1t6t_1 74 HGERINQKMKELLS---SQGFLVD-------ENFRNFLKKWNIIHIEEI 112 (118)
T ss_dssp HHHHHHHHHHHHHH---HTTCEEE-------CHHHHHHHHTTCCCGGGC
T ss_pred HHHHHHHHHHHHHH---HCCCCCC-------CCHHHHHHHCCHHHHHHH
T ss_conf 89999999999999---8779137-------599999988196999863
No 7
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=99.22 E-value=6.7e-12 Score=127.07 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=76.3
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCHHHH-HCCCCHHHHHHHHHC--CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 78708997143889998743554211343-213662678988512--681899617886622577788888877753697
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~-Gtalt~~~~~~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~ 346 (648)
..+.+|||||+|||++|+|+|+.|||+.. |.+++.+|+..|+++ ..+|++|||+|.||++++.+.... +....
T Consensus 3 k~~~vIIVEG~~D~~al~q~g~~~v~~~~~~~~~~~~~~~~l~~~~~~~~Iil~~D~D~aG~k~~~~l~~~----L~~a~ 78 (119)
T 2fcj_A 3 RVEKVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRRM----FPEAE 78 (119)
T ss_dssp CCCEEEEESSHHHHHHHHHHBSSCCEEEECCSCCCHHHHHHHHHHTTTSEEEEECCSSHHHHHHHHHHHHH----CTTSE
T ss_pred CCCEEEEEECHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH----CCCCC
T ss_conf 48979999488899999982798729952786478999999999727986999738977999999999986----77563
Q ss_pred CEEEEECCC--CCCHHHHHH----CCCHHHHHHHHHH
Q ss_conf 306752578--888889972----0366889988641
Q gi|254780834|r 347 RVNFVLLSR--GEDPDSFIR----CYGKTAFEKLIVE 377 (648)
Q Consensus 347 ~v~vv~LP~--G~DPDe~ir----~~G~eaf~~ll~~ 377 (648)
.+++-..+. ..+||+++. ++|.+....++..
T Consensus 79 ~~~i~~~~~~v~~~p~~~~~~~l~~~~~~~~~~~~~~ 115 (119)
T 2fcj_A 79 HLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMR 115 (119)
T ss_dssp EECCCTTTCSTTTSCHHHHHHHHHHTTCCBCGGGTC-
T ss_pred EEEECCCCCCHHHCCHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 8986677634311998999999998686087877753
No 8
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=98.57 E-value=3e-06 Score=75.15 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=106.1
Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53037999999999847788999984430023799889999999999975388999899998851112899999999986
Q gi|254780834|r 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 (648)
Q Consensus 478 ~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~ 557 (648)
+....+|+.||++|+.+|+++..+.+.+ ..+|.++.++.|+..+...+..+...++..+...+.++.. ..+..+
T Consensus 4 p~~~~AEr~LL~~ml~~~~~~~~v~~~~-~~~F~~~~~r~I~~~i~~~~~~~~~~~~~~~~~~l~~e~~-~~~~~i---- 77 (143)
T 2r6a_C 4 PAFQNAERLLLAHMMRSRDVALVVQERI-GGRFNIEEHRALAAYIYAFYEEGHEADPGALISRIPGELQ-PLASEL---- 77 (143)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHC-CSCCSSHHHHHHHHHHHHHHTTSCCSCHHHHTTTSCSSSH-HHHHHH----
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHH----
T ss_conf 9469999999999986989999998425-9870284789999999999872465308899999827776-689999----
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 543332025689988999999999999985899999999999999872412798999999999999999999
Q gi|254780834|r 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 (648)
Q Consensus 558 ~~~~~~~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~ 629 (648)
.......+... ..+.+++...++ ..+.+++.++..++.++...+|.+...+++.++.+++++|.
T Consensus 78 ---~~~~~~~~~~~----~~i~dyi~~ik~-~~l~~~i~~l~~~i~ea~~~gD~~~~~~l~~ei~~L~k~L~ 141 (143)
T 2r6a_C 78 ---SLLLIADDVSE----QELEDYIRHVLN-RPKWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKMLS 141 (143)
T ss_dssp ---TTSCCCSSCCH----HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHCCCCCCH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---99860268989----999999999999-99999999999999999888899999999999999999751
No 9
>2r5u_A Replicative DNA helicase; DNAB, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication, DNA-binding, endonuclease; 1.90A {Mycobacterium tuberculosis}
Probab=97.38 E-value=0.012 Score=42.11 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 379999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648)
Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648)
.-.|+.+|..++.+|+.+.++...+...+|.++.++.||..+.+.+.++...+...+...+...+.
T Consensus 31 ~eaEkaVLg~lL~~~~~~~~i~~~L~~edFy~~~h~~If~ai~~l~~~~~~iD~vtl~~~L~~~~~ 96 (200)
T 2r5u_A 31 LAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYGRGEPADAVTVAAELDRRGL 96 (200)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHTTCCTTCCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 999999999999494079999975799877879999999999999986999986899999887588
No 10
>3gxv_A Replicative DNA helicase; hexameric helicase, primase, replication, ATP-binding, autocatalytic cleavage, DNA replication; 2.20A {Helicobacter pylori} PDB: 3gxv_D 3gxv_C
Probab=96.62 E-value=0.044 Score=36.83 Aligned_cols=64 Identities=11% Similarity=-0.006 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 7999999999847788999984430023799889999999999975388999899998851112
Q gi|254780834|r 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 (648)
Q Consensus 482 ~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~ 545 (648)
-.|+.+|..++.+|+.+.++...+...+|.++.++.+|..+.+.+.++...+...+...+...+
T Consensus 12 ~~E~alLg~lL~~p~~~~~v~~~l~~edF~~~~h~~If~ai~~l~~~~~~iD~~tv~~~L~~~~ 75 (123)
T 3gxv_A 12 NIERIVLSGIVLANHKIEEVHSVLEPSDFYYPPNGLFFEIALKLHEEDCPIDENFIRQKMPKDK 75 (123)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHTTCCGGGCSSHHHHHHHHHHHHHHHTTCCCSHHHHHHTSCSSS
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 9999999999969848999994689999597989999999999984558876899999998769
No 11
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.57 E-value=0.075 Score=34.67 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 7858885010014655300103876765352101108178888643310000235678708997143889
Q gi|254780834|r 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 (648)
Q Consensus 214 ~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dv 283 (648)
.|.++.++||.=. |+..+.++.|....... ...|.++=--|..
T Consensus 202 ~g~l~vi~a~pg~------------------GKT~~~~~~a~~~~~~~---------g~~Vl~~SlEm~~ 244 (454)
T 2r6a_A 202 RSDLIIVAARPSV------------------GKTAFALNIAQNVATKT---------NENVAIFSLEMSA 244 (454)
T ss_dssp TTCEEEEECCTTS------------------CHHHHHHHHHHHHHHHS---------SCCEEEEESSSCH
T ss_pred CCCEEEEEECCCC------------------CCHHHHHHHHHHHHHHC---------CCCEEEEECCCCH
T ss_conf 8877999956776------------------53299998997576625---------9807998078999
No 12
>1b79_A DNAB helicase; hexamer, DNA replication, hydrolase; 2.30A {Escherichia coli} SCOP: a.81.1.1 PDB: 1jwe_A
Probab=96.43 E-value=0.064 Score=35.30 Aligned_cols=66 Identities=8% Similarity=-0.017 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 379999999998477889999844300237998899999999999753889998999988511128
Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 (648)
Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l 546 (648)
.-.|+.+|..++.+|+.+.++.+.+...+|.++.++.||..+.+.+.++...|.-.+...+...+.
T Consensus 21 ~eAE~~vLG~lL~~p~~~~~v~~~l~~edFy~~~h~~If~ai~~l~~~g~~iD~~tv~~~L~~~~~ 86 (119)
T 1b79_A 21 IEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQ 86 (119)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHTTCCGGGSSSHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
T ss_conf 899999999999185189999960499871889899999999999865999889999999986798
No 13
>1t3w_A DNA primase; DNAG, DNA-directed RNA polymerase, E. coli, DNA replication; HET: DNA MSE; 2.80A {Escherichia coli} SCOP: a.236.1.1 PDB: 2haj_A*
Probab=96.43 E-value=0.036 Score=37.57 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999998477889999844300-2379988999999999997538899989999885111289999999998654333
Q gi|254780834|r 484 EAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 (648)
Q Consensus 484 E~~LL~llI~~P~l~~~~~e~l~~-~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~~~~~~ 562 (648)
-+.+|.++|+||++...+.. ... ..+..+.. .++..+++.+.+++..+...+..+..+....+.+..+......
T Consensus 18 ~r~aI~lLL~~P~la~~l~~-~~~l~~~~~~~~-~lL~~L~~~~~~~p~~~ta~Lle~~r~t~~~~~L~~La~~e~~--- 92 (148)
T 1t3w_A 18 MRILIGLLVQNPELATLVPP-LENLDENKLPGL-GLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDI--- 92 (148)
T ss_dssp HHHHHHHHHHCGGGGGGCCC-CTTSCGGGSTTH-HHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCHHHHCCCC-HHHHHHCCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCC---
T ss_conf 99999999859198761995-577755456113-9999999999858999999999998188389999999855566---
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2025689988999999999999985899999999999999
Q gi|254780834|r 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 (648)
Q Consensus 563 ~~~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l 602 (648)
.+.++....+.+++.-+... .+..++..+....
T Consensus 93 ------~~~~~~~~ef~d~l~~L~~~-~~~~r~~~L~~k~ 125 (148)
T 1t3w_A 93 ------ADKNIAEQTFTDSLNHMFDS-LLELRQEELIARE 125 (148)
T ss_dssp ------HHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf ------88068999999999999999-9999999999776
No 14
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.33 E-value=0.099 Score=33.55 Aligned_cols=29 Identities=24% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 78588850100146553001038767653521011081788886433
Q gi|254780834|r 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 (648)
Q Consensus 214 ~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~ 260 (648)
.|.++-++||.=- |+..+.++.|...+.+
T Consensus 199 ~g~l~vi~a~pg~------------------GKT~~~~~~a~~~a~~ 227 (444)
T 2q6t_A 199 PGSLNIIAARPAM------------------GKTAFALTIAQNAALK 227 (444)
T ss_dssp TTCEEEEEECTTS------------------CHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCC------------------CCHHHHHHHHHHHHHH
T ss_conf 8848999830466------------------6218888789999997
No 15
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.00 E-value=0.14 Score=32.27 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCCCCCCCCCHHCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHH
Q ss_conf 7858885010014655300103876765352101108178888643310000235678708997143889
Q gi|254780834|r 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 (648)
Q Consensus 214 ~g~~i~f~gR~l~~~~~~KYlNSpeT~if~K~~~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dv 283 (648)
.|.++-++||.=- |+..+.++.|...... ...++++=.-|..
T Consensus 196 ~G~L~viaarpg~------------------GKT~~al~la~~~~~~----------g~~v~~~SlEMs~ 237 (444)
T 3bgw_A 196 RRNFVLIAARPSM------------------GKTAFALKQAKNMSDN----------DDVVNLHSLEMGK 237 (444)
T ss_dssp SSCEEEEEECSSS------------------SHHHHHHHHHHHHHHT----------TCEEEEECSSSCT
T ss_pred CCCEEEEECCCCC------------------CHHHHHHHHHHHHHCC----------CCCHHCCHHHCCH
T ss_conf 8876998507998------------------7479999999975312----------5513105141788
No 16
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=69.80 E-value=4.7 Score=18.12 Aligned_cols=82 Identities=22% Similarity=0.170 Sum_probs=53.7
Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCH-HHHHCCC------CHHHHH---HHHHC--CCEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 8708997143889998743554211-3432136------626789---88512--6818996178866225777888888
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVV-SSLGTAL------TEYQLR---LLWKL--SPRIVLCFDGDDPGLRAAYKAIDLV 338 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~v-a~~Gtal------t~~~~~---~l~r~--~~~vvl~fDgD~AG~kAa~Ra~e~~ 338 (648)
...+.|||-..|++++-+.|.-+.+ -.||-.+ +++.+. ++.|. .++|||+++..--|..-|.=..++
T Consensus 79 ~~~iCVVE~~~Dl~aIE~tg~y~G~YhVLgG~iSpldgigp~~l~i~~L~~Ri~~~~EVIlA~~~t~EGe~Ta~yi~~~- 157 (228)
T 1vdd_A 79 QRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQGMEVILATGTTVEGDATALYLQRL- 157 (228)
T ss_dssp TTEEEEESSHHHHHHTTTTSSCCSEEEECSSCCBGGGTBCTTTSTTGGGGGGCCTTCEEEECCCSSHHHHHHHHHHHHH-
T ss_pred CCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH-
T ss_conf 5458997789999999860811269986687637234899410036999998635867999817985518999999998-
Q ss_pred HHHHHCCCCEEEEECCCCC
Q ss_conf 7775369730675257888
Q gi|254780834|r 339 LCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 339 l~~l~~g~~v~vv~LP~G~ 357 (648)
+ .+..++|-.|..|.
T Consensus 158 ---L-k~~~ikiTRLA~Gl 172 (228)
T 1vdd_A 158 ---L-EPLGAAISRIAYGV 172 (228)
T ss_dssp ---H-TTSSCEEEECCBCB
T ss_pred ---H-HHCCCEEEEECCCC
T ss_conf ---5-44497087610068
No 17
>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}
Probab=68.89 E-value=3.4 Score=19.38 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=15.6
Q ss_pred EEECC-CCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 67136-888878-989989885999799999999981
Q gi|254780834|r 62 YYCFS-CHVKGD-HLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 62 ~~cf~-c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
-||-. ++.++- ++-|+|.+.|+++.+|++.+..+-
T Consensus 94 VhC~~G~sRS~~iv~aYLm~~~~~s~~~A~~~vr~~R 130 (164)
T 2hcm_A 94 VYCKNGRSRSAAVCTAYLMRHRGHSLDRAFQMVKSAR 130 (164)
T ss_dssp EEESSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHHC
T ss_pred EECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 9858998756999999999983999999999999989
No 18
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=67.23 E-value=3.1 Score=19.74 Aligned_cols=67 Identities=7% Similarity=0.021 Sum_probs=32.5
Q ss_pred HHHHHHH-HHCCCCHHHHCCCCCCCCCCCCC-HHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 5789999-85068853510124422567741-034554205997345232012100346541000016716888970778
Q gi|254780834|r 138 KRLHYYL-DERGIDSHAIEMFKLGYAPDSRY-SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215 (648)
Q Consensus 138 ~~a~~yl-~~Rg~~~~~~~~f~lG~ap~~~~-~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~~g 215 (648)
.-+..|| ..+|++-+.+-.|=-.--|-..+ ..+... .+-|+. | +=+..|.|-+.+..|
T Consensus 122 ~vv~aYLm~~~g~s~~~A~~~v~~~Rpc~P~~~~~~~~-----------~~~~~~----~-----~~~~~v~f~~~~~~~ 181 (294)
T 3nme_A 122 AVALTYMFWVQGYKLMEAHKLLMSKRSCFPKLDAIRNA-----------TIDILT----G-----LKRKTVTLTLKDKGF 181 (294)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHCCCCCCHHHHHHH-----------HHHHHH----C-----CCCEEEEEEEECSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHH-----------HHHHHH----C-----CCCCEEEEEEECCCC
T ss_conf 99999999981999999999999759989982799999-----------999863----7-----777239999988999
Q ss_pred CEEEEECCC
Q ss_conf 588850100
Q gi|254780834|r 216 QVIAFGGRT 224 (648)
Q Consensus 216 ~~i~f~gR~ 224 (648)
+.|...|=-
T Consensus 182 ~~V~v~G~f 190 (294)
T 3nme_A 182 SRVEISGLD 190 (294)
T ss_dssp SCEEEEETT
T ss_pred CEEEEEEEE
T ss_conf 899998474
No 19
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} PDB: 1m3g_A
Probab=65.57 E-value=3.4 Score=19.46 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=20.1
Q ss_pred EEEEC-CCCCCCC-HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 46713-6888878-989989885999799999999981
Q gi|254780834|r 61 FYYCF-SCHVKGD-HLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 61 ~~~cf-~c~~~gd-~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
+-||. |.+.++- ++-|+|+.+++++.+|++.+..+-
T Consensus 85 lVHC~~G~sRS~~v~~aYLm~~~~~s~~~A~~~v~~~R 122 (144)
T 3ezz_A 85 LVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQRR 122 (144)
T ss_dssp EEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTTC
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 99846777765999999999981999999999999989
No 20
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=65.40 E-value=1.8 Score=22.08 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=33.7
Q ss_pred ECCCCCCCCCEEEECCCCCCCCCCEEEECCCCEEEECCCCC--CCCHHH
Q ss_conf 15887777755753458888587879817897467136888--878989
Q gi|254780834|r 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV--KGDHLS 75 (648)
Q Consensus 29 ~~g~n~~~~~~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~--~gd~~~ 75 (648)
|.|.+....+..=.||...+.+|.+......|.+-|..||. .-.+|+
T Consensus 10 ~~~~~~~~~~~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~e~~id 58 (345)
T 3k7a_M 10 RAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58 (345)
T ss_dssp -------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCCCCCCC
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCEEEECCCCCEECCCCCCCCCCCCCC
T ss_conf 2357799986031895999999864678788988314688780464455
No 21
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=64.59 E-value=5.8 Score=17.31 Aligned_cols=60 Identities=7% Similarity=0.045 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7888888997203668899886414992---79999999853023314579999999998854
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A~~l---~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~ 413 (648)
-...||++++.++|+|+++-++-...+. .+|-++......+.+-......+..++...+.
T Consensus 350 GNvIdp~dli~~ygaD~lR~~l~~~~~~~~d~df~~~~~~~~~n~~l~~~l~N~~~r~~~~~~ 412 (722)
T 1rqg_A 350 NWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVN 412 (722)
T ss_dssp TBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 873788998750582789999997088877753027899999888877655479999997455
No 22
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=64.27 E-value=3.8 Score=18.97 Aligned_cols=20 Identities=5% Similarity=0.340 Sum_probs=7.2
Q ss_pred HHHHHHCCCCHHHHHHHHHH
Q ss_conf 99898859997999999999
Q gi|254780834|r 75 SFLSALLGCSFIESVQRLAA 94 (648)
Q Consensus 75 ~f~~~~~~~~f~ea~~~la~ 94 (648)
-|+|.+.|+++.+|++.+..
T Consensus 110 ayLm~~~~~~~~~A~~~v~~ 129 (154)
T 2r0b_A 110 AYIMETFGMKYRDAFAYVQE 129 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHH
T ss_conf 99999849999999999999
No 23
>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specificity phosphatase; 1.88A {Homo sapiens}
Probab=61.71 E-value=6.1 Score=17.10 Aligned_cols=14 Identities=21% Similarity=0.242 Sum_probs=8.0
Q ss_pred HHHHHHCCCCCCHH
Q ss_conf 99987435542113
Q gi|254780834|r 283 VLSLCQAGVQNVVS 296 (648)
Q Consensus 283 vi~l~~~G~~n~va 296 (648)
.-.|.+.||+.+|.
T Consensus 44 ~~~L~~~gIt~Iln 57 (190)
T 2wgp_A 44 RHLLQARGITCIVN 57 (190)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
T ss_conf 99999879978997
No 24
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=61.35 E-value=6.5 Score=16.85 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=34.3
Q ss_pred EEEECCCCCCCCCCEEEECCCCEEEECCCCC--CCCHHHHHHHH
Q ss_conf 5753458888587879817897467136888--87898998988
Q gi|254780834|r 39 YWACCPFHDEKTPSFHCNDSKGFYYCFSCHV--KGDHLSFLSAL 80 (648)
Q Consensus 39 ~~~~cPfh~ektpsf~v~~~~~~~~cf~c~~--~gd~~~f~~~~ 80 (648)
..-.||-...+.+++...++.|-.-|-.||. ..++||.=.+-
T Consensus 20 itl~CPeCGS~~t~IVeD~s~GEiVCsdCGLVIEErIIDeGPEW 63 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVDTRSEW 63 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCCCCCBCHHHHH
T ss_pred EEEECCCCCCCCCEEEEECCCCCEECCCCCEEECCCCCCCCCCC
T ss_conf 54689999998998989799896897148929245335799310
No 25
>2oud_A Dual specificity protein phosphatase 10; A central five-stranded B-sheet, hydrolase; 2.80A {Homo sapiens}
Probab=61.04 E-value=4.8 Score=18.04 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHHHH
Q ss_conf 1457999999999885
Q gi|254780834|r 397 TPDERAELEIHLKNCI 412 (648)
Q Consensus 397 spe~ka~~~~~l~~~I 412 (648)
++++-..+++..++.+
T Consensus 116 ~~~~A~~~vr~~Rp~i 131 (177)
T 2oud_A 116 TMTDAYKFVKGKRPII 131 (177)
T ss_dssp CHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHCCCC
T ss_conf 9999999999989976
No 26
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}
Probab=59.61 E-value=5.3 Score=17.69 Aligned_cols=15 Identities=13% Similarity=0.100 Sum_probs=6.5
Q ss_pred CCCEEEEECCCCCCH
Q ss_conf 973067525788888
Q gi|254780834|r 345 GNRVNFVLLSRGEDP 359 (648)
Q Consensus 345 g~~v~vv~LP~G~DP 359 (648)
|++..-+.+|++..|
T Consensus 56 ~i~~~~~p~~D~~~p 70 (151)
T 2img_A 56 GLTLHRLRIPDFCPP 70 (151)
T ss_dssp TSEEEECCCCTTCCC
T ss_pred CCEEEEEECCCCCCC
T ss_conf 947999752589998
No 27
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=58.73 E-value=1.8 Score=21.93 Aligned_cols=11 Identities=45% Similarity=0.996 Sum_probs=8.8
Q ss_pred EECCCCCCCCH
Q ss_conf 71368888789
Q gi|254780834|r 63 YCFSCHVKGDH 73 (648)
Q Consensus 63 ~cf~c~~~gd~ 73 (648)
-||+||+.|.+
T Consensus 4 vcfscgktghi 14 (26)
T 1dsq_A 4 VCFSCGKTGHI 14 (26)
T ss_dssp BCTTTCCBSSC
T ss_pred EEEECCCCCCC
T ss_conf 77756876651
No 28
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Lactobacillus salivarius UCC118}
Probab=58.20 E-value=7.2 Score=16.43 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 788999984430023799889999999999975388999899998851112899
Q gi|254780834|r 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 (648)
Q Consensus 495 P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~e 548 (648)
|+.+..+++.+....+.|.. .....++..........+..|...|...++..
T Consensus 49 ~~~i~~vi~~L~~~gyidD~--ryA~~~v~~~~~~~~~G~~~I~~~L~~kGi~~ 100 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDK--NYAESYVRTMMNTSDKGPKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHH--HHHHHHHHHHHHHCCCCHHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCH
T ss_conf 99999999999995999949--99999999998724742999999999869999
No 29
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=58.08 E-value=7.2 Score=16.41 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 778899998443002379988999999999997538899989999885111289
Q gi|254780834|r 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 (648)
Q Consensus 494 ~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~ 547 (648)
.++.+..+++.+....|.|.. .....++..... ....+..+...|...++.
T Consensus 47 ~~~~i~~vI~~l~~~gyldD~--~ya~~~v~~~~~-~g~G~~~I~~~L~~kGI~ 97 (162)
T 3dfg_A 47 EPEAAQAAVERLAGEGWQDDV--RFAASVVRNRAS-SGYGPLHIRAELGTHGLD 97 (162)
T ss_dssp CHHHHHHHHHHHHHTTSCCHH--HHHHHHHHHHHT-TTCCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHH-CCCHHHHHHHHHHHCCCC
T ss_conf 999999999999993999989--999999997402-575199999999994999
No 30
>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} PDB: 1vhr_A* 1j4x_A*
Probab=56.44 E-value=7.6 Score=16.20 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=6.8
Q ss_pred HHHHHCCCCCCHH
Q ss_conf 9987435542113
Q gi|254780834|r 284 LSLCQAGVQNVVS 296 (648)
Q Consensus 284 i~l~~~G~~n~va 296 (648)
-.|.+.||+.+|.
T Consensus 47 ~~L~~~gI~~Vin 59 (183)
T 3f81_A 47 PKLQKLGITHVLN 59 (183)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHCCCEEEEE
T ss_conf 9999889919997
No 31
>2zkr_z 60S ribosomal protein L37A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1ysh_D
Probab=56.25 E-value=6.2 Score=17.03 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=18.5
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||.+-. ++. -..-|+|+|=.||.
T Consensus 37 y~Cp~Cgk~--~vk-R~a~GIW~C~kC~~ 62 (92)
T 2zkr_z 37 YTCSFCGKT--KMK-RRAVGIWHCGSCMK 62 (92)
T ss_dssp BCCSSSCSS--CEE-EEETTEEEETTTCC
T ss_pred CCCCCCCCC--EEE-EEEEEEEECCCCCC
T ss_conf 509999998--778-89988868479999
No 32
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=55.57 E-value=5.7 Score=17.40 Aligned_cols=23 Identities=4% Similarity=0.066 Sum_probs=9.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 98998988599979999999998
Q gi|254780834|r 73 HLSFLSALLGCSFIESVQRLAAI 95 (648)
Q Consensus 73 ~~~f~~~~~~~~f~ea~~~la~~ 95 (648)
++-|+|.+.++++.+|++.+-.+
T Consensus 99 ~~aYLm~~~~~~~~~A~~~vr~~ 121 (145)
T 2nt2_A 99 VIAYAMKEYGWNLDRAYDYVKER 121 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999998498999999999997
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, alternative splicing, amyloid, amyloidosis, blood coagulation, coiled coil; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.40 E-value=7.9 Score=16.07 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHC
Q ss_conf 7888888997203668899886414
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVES 378 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A 378 (648)
|-..|+|==++-=..=.++.+|++.
T Consensus 34 ~~~~~~~~~~~~~~~c~~~~~~~~~ 58 (562)
T 3ghg_A 34 PFCSDEDWNYKCPSGCRMKGLIDEV 58 (562)
T ss_dssp CBCCSSSBTTEEECHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9774754567798610156789886
No 34
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661}
Probab=54.94 E-value=4.7 Score=18.12 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHCCHHHH----HHHHCC---CEECCCCCCCCCEEE----ECC----CCCCCCCCEEEECCCCEEEECCCC
Q ss_conf 88899999874888887----541222---101588777775575----345----888858787981789746713688
Q gi|254780834|r 4 PRDFIKDLLIHIPISNL----IGQYVD---WDRRKTNAVKGDYWA----CCP----FHDEKTPSFHCNDSKGFYYCFSCH 68 (648)
Q Consensus 4 ~~~~i~~i~~~~~i~~v----v~~~v~---l~~~g~n~~~~~~~~----~cP----fh~ektpsf~v~~~~~~~~cf~c~ 68 (648)
++..|++|.++++|-=. ||+++. |.--|- +|+- |.| ||-.|+. |.| -|.||
T Consensus 62 dp~~I~eI~~avsIPVmAK~RIGH~~EAqiLealgV-----D~IDESEVLTpADe~~HI~K~~-F~v--------PFVCG 127 (330)
T 2yzr_A 62 DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGV-----DMIDESEVLTQADPFFHIYKKK-FNV--------PFVCG 127 (330)
T ss_dssp CHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHTTC-----SEEEEETTSCCSCSSCCCCGGG-CSS--------CEEEE
T ss_pred CHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCC-CCC--------CEECC
T ss_conf 879999999743776211330230799999987099-----8526113567787202133304-777--------64337
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 887898998988599979999999998188
Q gi|254780834|r 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 (648)
Q Consensus 69 ~~gd~~~f~~~~~~~~f~ea~~~la~~~gi 98 (648)
+. ++.||++..++=+-+
T Consensus 128 ar-------------nLGEALRRI~EGAaM 144 (330)
T 2yzr_A 128 AR-------------NLGEAVRRIWEGAAM 144 (330)
T ss_dssp CS-------------SHHHHHHHHHHTCSE
T ss_pred CC-------------CHHHHHHHHHCCHHH
T ss_conf 89-------------708999988600211
No 35
>3e90_B NS3 protease; trypsin-like serine protease, protease inhibitor, catalytic histidine, induced FIT, ATP-binding, capsid protein, helicase; HET: NKK; 2.45A {West nile virus}
Probab=54.16 E-value=5.6 Score=17.46 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=12.6
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 142 PIin~~G~VVGLYGNG 157 (198)
T 3e90_B 142 PIVDKNGDVIGLYGNG 157 (198)
T ss_dssp EEECTTCCEEEECCCE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 6474698599985364
No 36
>3lkw_A Fusion protein of nonstructural protein 2B and nonstructural protein 3; viral protease, serine protease, NS3 protease, NS2B cofactor; 2.00A {Dengue virus 1} PDB: 3l6p_A
Probab=53.31 E-value=5.8 Score=17.30 Aligned_cols=16 Identities=25% Similarity=0.611 Sum_probs=11.8
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 188 PIin~~G~VVGLYGNG 203 (236)
T 3lkw_A 188 PIVNREGKIVGLYGNG 203 (236)
T ss_dssp EEECTTSCEEEESCCE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 6587899799985354
No 37
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y*
Probab=53.17 E-value=7.4 Score=16.33 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=18.1
Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf 5345888858787981-7897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648)
-.|||.+-. .|- ..-|+|+|=.||.
T Consensus 61 y~CpfCgk~----~vkR~a~GIW~C~kCg~ 86 (116)
T 3cc2_Z 61 HACPNCGED----RVDRQGTGIWQCSYCDY 86 (116)
T ss_dssp EECSSSCCE----EEEEEETTEEEETTTCC
T ss_pred CCCCCCCCC----CEEEEEEEEEECCCCCC
T ss_conf 609888998----03889989987489898
No 38
>2fp7_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, substrate-based inhibitor, viral protein/protease complex; HET: NDL; 1.68A {West nile virus} SCOP: b.47.1.3
Probab=52.94 E-value=5.9 Score=17.21 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=9.4
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 123 PIi~~~G~vVGLYGnG 138 (172)
T 2fp7_B 123 PIVDKNGDVIGLYGNG 138 (172)
T ss_dssp EEECTTSCEEEESCCE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 6474599699985354
No 39
>2ggv_B NS3, non-structural protein 3; beta barrel, serine protease, viral protease, flavivirus, hydrolase; 1.80A {West nile virus} PDB: 2ijo_B
Probab=52.42 E-value=6.4 Score=16.88 Aligned_cols=16 Identities=38% Similarity=0.619 Sum_probs=9.6
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 137 PIi~~~G~vVGLYGnG 152 (185)
T 2ggv_B 137 PIVDKNGDVIGLYGNG 152 (185)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred CEECCCCCEEEEECCE
T ss_conf 7475598299985575
No 40
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=52.21 E-value=3.8 Score=19.01 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=12.7
Q ss_pred CCCEEEECCCCCCCCH
Q ss_conf 8974671368888789
Q gi|254780834|r 58 SKGFYYCFSCHVKGDH 73 (648)
Q Consensus 58 ~~~~~~cf~c~~~gd~ 73 (648)
.+...+||-||+-|-.
T Consensus 3 qr~~ikCfNCGkeGH~ 18 (29)
T 1nc8_A 3 QRKVIRCWNCGKEGHS 18 (29)
T ss_dssp CCCCCBCTTTSCBSSC
T ss_pred CCCEEEEECCCCCCHH
T ss_conf 6645676527874320
No 41
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=51.86 E-value=5.7 Score=17.37 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHH
Q ss_conf 7897467136888878989989
Q gi|254780834|r 57 DSKGFYYCFSCHVKGDHLSFLS 78 (648)
Q Consensus 57 ~~~~~~~cf~c~~~gd~~~f~~ 78 (648)
+.+..-=..|||.|||...|..
T Consensus 47 ~~~~~VLDlgcG~GgDl~K~~~ 68 (302)
T 2vdw_A 47 SNKRKVLAIDFGNGADLEKYFY 68 (302)
T ss_dssp CSCCEEEETTCTTTTTHHHHHH
T ss_pred CCCCEEEEEEEEECHHHHHHHH
T ss_conf 8899799995000452799996
No 42
>1s1i_9 L37A, YL35, 60S ribosomal protein L43; 80S ribosome, 60S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=51.37 E-value=6.7 Score=16.74 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=18.2
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||.+-.. + ---.-|+|+|=.||.
T Consensus 36 y~Cp~Cgk~~--v-kR~a~GIW~C~kC~~ 61 (91)
T 1s1i_9 36 YDCSFCGKKT--V-KRGAAGIWTCSCCKK 61 (91)
T ss_dssp CCCTTTCSSC--C-CEETTTEECCSSSCC
T ss_pred CCCCCCCCCE--E-EEEEEEEEECCCCCC
T ss_conf 2398999973--4-899888868799998
No 43
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=50.89 E-value=3.9 Score=18.93 Aligned_cols=23 Identities=17% Similarity=0.423 Sum_probs=10.7
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHCCC
Q ss_conf 7888999998748888875412221
Q gi|254780834|r 3 YPRDFIKDLLIHIPISNLIGQYVDW 27 (648)
Q Consensus 3 i~~~~i~~i~~~~~i~~vv~~~v~l 27 (648)
+++++++.++. ||.+||+.||+.
T Consensus 35 ~sp~~l~~lk~--dIl~VIsKYv~I 57 (95)
T 2kxo_A 35 QTPDYLPTLRK--ALMEVLSKYVNV 57 (95)
T ss_dssp CCCCSHHHHHH--HHHHHHHHHSCC
T ss_pred CCHHHHHHHHH--HHHHHHHHHEEE
T ss_conf 99899999999--999999987221
No 44
>2prx_A Thioesterase superfamily protein; ZP_00837258.1, structural genomics, joint center for structural genomics, JCSG; 1.50A {Shewanella loihica pv-4}
Probab=50.81 E-value=2.6 Score=20.57 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=7.8
Q ss_pred EEEECCCCCC
Q ss_conf 4671368888
Q gi|254780834|r 61 FYYCFSCHVK 70 (648)
Q Consensus 61 ~~~cf~c~~~ 70 (648)
+-||||||..
T Consensus 15 ~~~CfgCG~~ 24 (160)
T 2prx_A 15 LSHCYGCGRN 24 (160)
T ss_dssp -CCSCC----
T ss_pred CCCEEEECCC
T ss_conf 9968890998
No 45
>1rxd_A Protein tyrosine phosphatase type IVA, member 1; protein tyrosine phosphatase IVA1...; structural genomics, NYSGXRC, unknown function, PSI; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1xm2_A 1zck_A 1r6h_A 1v3a_A
Probab=50.77 E-value=7.6 Score=16.23 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=6.6
Q ss_pred CCCEEEEECCCCCCH
Q ss_conf 973067525788888
Q gi|254780834|r 345 GNRVNFVLLSRGEDP 359 (648)
Q Consensus 345 g~~v~vv~LP~G~DP 359 (648)
|+++.-+..|++..|
T Consensus 61 gi~~~~~p~~D~~~p 75 (159)
T 1rxd_A 61 GIHVLDWPFDDGAPP 75 (159)
T ss_dssp TCEEEECCC--CCCC
T ss_pred CCEEEEEEECCCCCC
T ss_conf 947999754698896
No 46
>1ohe_A CDC14B, CDC14B2 phosphatase; protein phosphatase, cell cycle, hydrolase; HET: SEP; 2.20A {Homo sapiens} SCOP: c.45.1.1 c.45.1.1 PDB: 1ohc_A 1ohd_A
Probab=50.76 E-value=9.1 Score=15.49 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=23.1
Q ss_pred EEEECCCCCCCCC---CEEEECCCC---EEEECCCCCCCCHHHHHHHHC
Q ss_conf 5753458888587---879817897---467136888878989989885
Q gi|254780834|r 39 YWACCPFHDEKTP---SFHCNDSKG---FYYCFSCHVKGDHLSFLSALL 81 (648)
Q Consensus 39 ~~~~cPfh~ektp---sf~v~~~~~---~~~cf~c~~~gd~~~f~~~~~ 81 (648)
|++++--.-..|| -|+|..+-. ||..||-=-=|-+..|..+..
T Consensus 19 y~~~~~~~p~~~~~~~~f~~d~~l~Y~~f~~DfGPlnl~~~~rf~~~~~ 67 (348)
T 1ohe_A 19 CFAILYSRPKSASNVHYFSIDNELEYENFYADFGPLNLAMVYRYCCKIN 67 (348)
T ss_dssp EEEECSSCCCCBTTEEEEECTTTSCCCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9997267899999737997277047756653468732999999999999
No 47
>2pq5_A Dual specificity protein phosphatase 13; hydrolase, dual specificity phosphatase, DUSP13, testis and skeletal muscle specific DSP; 2.30A {Homo sapiens} PDB: 2gwo_A
Probab=50.28 E-value=9.3 Score=15.43 Aligned_cols=13 Identities=8% Similarity=0.330 Sum_probs=4.8
Q ss_pred EEEEECCCCCCHH
Q ss_conf 0675257888888
Q gi|254780834|r 348 VNFVLLSRGEDPD 360 (648)
Q Consensus 348 v~vv~LP~G~DPD 360 (648)
+....+|-..+|+
T Consensus 97 i~y~~i~~~D~~~ 109 (205)
T 2pq5_A 97 LEYYGIEADDNPF 109 (205)
T ss_dssp CEEEECBCCCCTT
T ss_pred CEEEEEECCCCCC
T ss_conf 4699777887886
No 48
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomics, protein structure initiative; 2.35A {Lactobacillus reuteri 100-23}
Probab=50.13 E-value=9.3 Score=15.42 Aligned_cols=13 Identities=8% Similarity=0.049 Sum_probs=4.4
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9984430023799
Q gi|254780834|r 500 EQYQELADIRYDN 512 (648)
Q Consensus 500 ~~~e~l~~~~f~~ 512 (648)
.+++.+....+.|
T Consensus 97 ~vi~~L~~~gyld 109 (221)
T 3d5l_A 97 PILKKLRGQQLID 109 (221)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999999869989
No 49
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase, zinc; NMR {Methanothermobacterthermautotrophicus str}
Probab=49.87 E-value=4.7 Score=18.16 Aligned_cols=10 Identities=40% Similarity=1.225 Sum_probs=3.6
Q ss_pred CCEEEECCCC
Q ss_conf 9746713688
Q gi|254780834|r 59 KGFYYCFSCH 68 (648)
Q Consensus 59 ~~~~~cf~c~ 68 (648)
.|+|+|-+||
T Consensus 59 ~G~Y~C~~C~ 68 (151)
T 2k8d_A 59 DGIYRCICCG 68 (151)
T ss_dssp CSEEEETTTT
T ss_pred CCEEEECCCC
T ss_conf 8889837899
No 50
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=49.44 E-value=9.5 Score=15.33 Aligned_cols=15 Identities=20% Similarity=0.107 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 999999999818858
Q gi|254780834|r 86 IESVQRLAAIAGVPL 100 (648)
Q Consensus 86 ~ea~~~la~~~gi~~ 100 (648)
+|.|+.-..+=|+++
T Consensus 50 pe~v~~~l~~R~~~~ 64 (501)
T 1wle_A 50 PEDAARALDLRKGEL 64 (501)
T ss_dssp HHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHCCCCC
T ss_conf 999999999728974
No 51
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=48.69 E-value=8.4 Score=15.84 Aligned_cols=25 Identities=24% Similarity=0.672 Sum_probs=18.0
Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf 5345888858787981-7897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648)
-.|||.+-. .|- ..-|+|+|=.||.
T Consensus 28 y~Cp~Cgk~----~vkR~a~GIW~C~kC~~ 53 (83)
T 1vq8_Z 28 HACPNCGED----RVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp EECSSSCCE----EEEEEETTEEEETTTCC
T ss_pred CCCCCCCCC----EEEEEEEEEEECCCCCC
T ss_conf 719899997----67899988978378999
No 52
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A*
Probab=48.34 E-value=9.8 Score=15.20 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=15.0
Q ss_pred EEEEEEECCCCEEEEEC
Q ss_conf 68889707785888501
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGG 222 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~g 222 (648)
-+.||+|..|++++|-|
T Consensus 129 ~~~Pi~de~G~i~~~vG 145 (149)
T 3d72_A 129 TMIPVRDETGEYRYSMG 145 (149)
T ss_dssp EEEEEECTTSSEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
T ss_conf 99999999989999999
No 53
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: ATP; 2.20A {Chlorobium tepidum tls}
Probab=48.03 E-value=9.9 Score=15.16 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=31.3
Q ss_pred CCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 54211343213662678988512681899617886622577788888877
Q gi|254780834|r 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 (648)
Q Consensus 291 ~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~ 340 (648)
+..+|-=+|..++..... +...++.|++..+.|-.+..++.|.++.+..
T Consensus 119 ~D~iiiD~~~~~~~~~~~-~l~~ad~vi~v~~~~~~sl~~~~~~~~~l~~ 167 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVW-VLEHLDELCIVTTPSLQSLRRAGQLLKLCKE 167 (245)
T ss_dssp CSEEEEEEESSCCTTHHH-HGGGCSEEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCHHHHH-HHHHCCEEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 897996689988999999-9997894799717999999999999999998
No 54
>2fom_B Polyprotein; flavivirus, NS3 protease, NS2B cofactor, viral protein/protease complex; 1.50A {Dengue virus 2} SCOP: b.47.1.3 PDB: 1df9_A 2qid_A 1bef_A
Probab=47.92 E-value=7.6 Score=16.23 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=9.3
Q ss_pred CEEEEEE-EECCCCEEEEECC
Q ss_conf 7168889-7077858885010
Q gi|254780834|r 204 NRLIFPI-RSSRGQVIAFGGR 223 (648)
Q Consensus 204 ~Ri~fPi-~~~~g~~i~f~gR 223 (648)
++.+=|. .|.++.+|.+||-
T Consensus 62 g~~~~p~w~~V~~DlisYgGp 82 (185)
T 2fom_B 62 GKRIEPSWADVKKDLISYGGG 82 (185)
T ss_dssp TEEECEEEEETTTTEEEESSS
T ss_pred CCEEEEEEECCCCCEEEECCC
T ss_conf 968611565100627861686
No 55
>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}
Probab=47.92 E-value=8.3 Score=15.85 Aligned_cols=32 Identities=16% Similarity=0.327 Sum_probs=19.8
Q ss_pred CCEEEE--CCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 755753--458888587879817897467136888
Q gi|254780834|r 37 GDYWAC--CPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 37 ~~~~~~--cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-+++|| ||=++...=-|.+..++ ...|+-||.
T Consensus 31 ~RiVGC~g~~~dsh~v~W~~l~~g~-~~RC~eCG~ 64 (80)
T 2odx_A 31 YRYVGCTGSPAGSHTIMWLKPTVNE-VARCWECGS 64 (80)
T ss_dssp SCCEEESSSTTCCSCCEEECCCTTC-EEECSSSCC
T ss_pred CEEEEEECCCCCCCEEEEEEECCCC-CCCCCCCCC
T ss_conf 7798775788887466899960798-423566886
No 56
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=46.68 E-value=10 Score=15.00 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=6.6
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999847
Q gi|254780834|r 484 EAALLLTLINH 494 (648)
Q Consensus 484 E~~LL~llI~~ 494 (648)
-|.|+++|-+|
T Consensus 411 ~R~l~ailEn~ 421 (455)
T 2dq0_A 411 SRAIVAILENH 421 (455)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHC
T ss_conf 78999999847
No 57
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Listeria monocytogenes CLIP81459}
Probab=45.77 E-value=5.6 Score=17.47 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=17.5
Q ss_pred CEEEEEC-C-HHHHHHHHHCCCCCCH
Q ss_conf 7089971-4-3889998743554211
Q gi|254780834|r 272 SFIILVE-G-YMDVLSLCQAGVQNVV 295 (648)
Q Consensus 272 ~~~i~vE-G-y~Dvi~l~~~G~~n~v 295 (648)
..+++|. . ..|+.+..++|+..+-
T Consensus 115 ~~~l~VGD~~~~Di~~A~~aG~~ti~ 140 (189)
T 3ib6_A 115 TEAVMVGNTFESDIIGANRAGIHAIW 140 (189)
T ss_dssp GGEEEEESBTTTTHHHHHHTTCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHCCCEEEE
T ss_conf 63289974708879999985997999
No 58
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=45.76 E-value=11 Score=14.89 Aligned_cols=17 Identities=18% Similarity=0.336 Sum_probs=10.2
Q ss_pred EECCCCC-CCCHHHHHHH
Q ss_conf 7136888-8789899898
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA 79 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~~ 79 (648)
.||+||+ =||.+..+.+
T Consensus 5 RCFTCgkvi~~k~~~y~~ 22 (55)
T 1ef4_A 5 RCLSCGKPVSAYFNEYQR 22 (55)
T ss_dssp SCSCTTSCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 737886508999999999
No 59
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics, phosphoprotein phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=44.51 E-value=9.6 Score=15.28 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 3662678988512681899617886
Q gi|254780834|r 301 ALTEYQLRLLWKLSPRIVLCFDGDD 325 (648)
Q Consensus 301 alt~~~~~~l~r~~~~vvl~fDgD~ 325 (648)
.+|+.++..|.++.-+-|+.+-++.
T Consensus 20 ~~~~~~~~~L~~lgI~tIi~lr~~~ 44 (151)
T 1xri_A 20 FPDSANFSFLQTLGLRSIIYLCPEP 44 (151)
T ss_dssp CCCHHHHHHHHHHTCSEEEECCSSC
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9896539999987998899888866
No 60
>1cu1_A Protein (protease/helicase NS3); bifunctional,protease-helicase, hydrolase; 2.50A {Hepatitis c virus} SCOP: b.47.1.3 c.37.1.14 c.37.1.14
Probab=44.15 E-value=10 Score=14.98 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=20.0
Q ss_pred CCCCCCCEEEEEEEECCCCEEEEECCCC
Q ss_conf 0000167168889707785888501001
Q gi|254780834|r 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 (648)
Q Consensus 198 ~~d~Fr~Ri~fPi~~~~g~~i~f~gR~l 225 (648)
+.|.++|-===||.|..|+|||+.|--+
T Consensus 145 ~ld~p~GtSGSPIi~~~G~VVGlYgngv 172 (645)
T 1cu1_A 145 PVSYLKGSSGGPLLCPSGHAVGIFRAAV 172 (645)
T ss_dssp EGGGTTTCTTCEEECTTSCEEEEEEEEE
T ss_pred CCCCCCCCCCCCEECCCCCEEEEECCEE
T ss_conf 1577999998870879985898735389
No 61
>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=43.43 E-value=11 Score=14.61 Aligned_cols=11 Identities=36% Similarity=0.410 Sum_probs=5.4
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999847
Q gi|254780834|r 484 EAALLLTLINH 494 (648)
Q Consensus 484 E~~LL~llI~~ 494 (648)
.|.|.+++-+|
T Consensus 385 ~R~l~ailE~~ 395 (421)
T 1ses_A 385 PRILAMLLENH 395 (421)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHC
T ss_conf 89999999973
No 62
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, cytoplasm, exonuclease, hydrolase, magnesium, metal-binding, nonsense- mediated mRNA decay; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=43.21 E-value=5.3 Score=17.66 Aligned_cols=57 Identities=16% Similarity=0.204 Sum_probs=35.6
Q ss_pred HCCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEE
Q ss_conf 11081788886433100002356787089971438899987435542113432136626789885126818
Q gi|254780834|r 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317 (648)
Q Consensus 247 ~Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~v 317 (648)
-..|+-.-.+.+.+. +.++|.-=|.+|++-+++.= +++|=-.+.+ =.+.+.++-+.|
T Consensus 261 ~~~GFr~v~~~l~~~---------kkpiVgHN~~~Dl~~l~~~F----~gpLP~~~~e-Fk~~v~~lFP~i 317 (507)
T 3d45_A 261 DAVGFSRVIHAIANS---------GKLVVGHNMLLDVMHTIHQF----YCPLPADLNE-FKEMAICVFPRL 317 (507)
T ss_dssp HHSBTHHHHHHHHHH---------CCEEEESSCHHHHHHHHHHH----TCSCCSSHHH-HHHHHHHHCSCE
T ss_pred HHHHHHHHHHHHHHC---------CCEEEEECCHHHHHHHHHHH----CCCCCCCHHH-HHHHHHHHCCCC
T ss_conf 421489999999725---------98399924388899999984----2889967999-999999977750
No 63
>1zcl_A Protein tyrosine phosphatase 4A1; PRL-1 PTP4A dual specific phosphatase, hydrolase; 2.90A {Rattus norvegicus} PDB: 1x24_A
Probab=43.03 E-value=11 Score=14.69 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=12.0
Q ss_pred HHCCCCEEEEECCCCCCHH
Q ss_conf 5369730675257888888
Q gi|254780834|r 342 LIPGNRVNFVLLSRGEDPD 360 (648)
Q Consensus 342 l~~g~~v~vv~LP~G~DPD 360 (648)
...|+.+.-+.+|++..|.
T Consensus 79 ~~~gI~~~~~p~~D~~~P~ 97 (180)
T 1zcl_A 79 EKEGIHVLDWPFDDGAPPS 97 (180)
T ss_dssp HTTTCEEEECCCCTTSCCC
T ss_pred HHCCCEEEEEECCCCCCCC
T ss_conf 9759889995169999979
No 64
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=42.96 E-value=10 Score=15.13 Aligned_cols=11 Identities=36% Similarity=1.105 Sum_probs=4.8
Q ss_pred CCEEEECCCCC
Q ss_conf 97467136888
Q gi|254780834|r 59 KGFYYCFSCHV 69 (648)
Q Consensus 59 ~~~~~cf~c~~ 69 (648)
+|+|+|-+||.
T Consensus 35 ~G~Y~C~~C~~ 45 (143)
T 2l1u_A 35 TGMYHCVCCDS 45 (143)
T ss_dssp CEEEEESSSSC
T ss_pred CEEEEEECCCC
T ss_conf 74898237999
No 65
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=42.71 E-value=10 Score=14.98 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=3.8
Q ss_pred CCEEEECCCC
Q ss_conf 9746713688
Q gi|254780834|r 59 KGFYYCFSCH 68 (648)
Q Consensus 59 ~~~~~cf~c~ 68 (648)
+|+|+|-+||
T Consensus 48 ~G~Y~C~~Cg 57 (154)
T 3hcj_A 48 DGVYTCRLCG 57 (154)
T ss_dssp SEEEEETTTC
T ss_pred CEEEECCCCC
T ss_conf 8089736899
No 66
>2g6z_A Dual specificity protein phosphatase 5; alpha/beta, hydrolase; 2.70A {Homo sapiens}
Probab=42.70 E-value=12 Score=14.52 Aligned_cols=11 Identities=9% Similarity=0.190 Sum_probs=4.2
Q ss_pred HHHHCCCCCCH
Q ss_conf 98743554211
Q gi|254780834|r 285 SLCQAGVQNVV 295 (648)
Q Consensus 285 ~l~~~G~~n~v 295 (648)
.|.+.||+.+|
T Consensus 26 ~L~~~gI~~Ii 36 (211)
T 2g6z_A 26 FLANLHITALL 36 (211)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHHCCCEEEE
T ss_conf 99987987999
No 67
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=42.67 E-value=12 Score=14.52 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999885417998999999999999988765
Q gi|254780834|r 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 (648)
Q Consensus 404 ~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~~~ 436 (648)
++++|-..++.|.|+.+=++-++++.+.++.++
T Consensus 33 vikEIs~kvs~Iqn~~L~E~~IRdLNDeINkL~ 65 (92)
T 1x4t_A 33 IIGEISKKVAQIQNAGLGEFRIRDLNDEINKLL 65 (92)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999985089987899999999999999
No 68
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB: 2i6i_A 2i6m_A 2i6o_A* 2dxp_A* 2i6p_A*
Probab=42.65 E-value=11 Score=14.79 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=28.4
Q ss_pred CHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCCHH--HHHH-HHHHHHHHHHCCCCEEEEECCCCCCHH
Q ss_conf 113432136626789885126818996178866225--7778-888887775369730675257888888
Q gi|254780834|r 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR--AAYK-AIDLVLCHLIPGNRVNFVLLSRGEDPD 360 (648)
Q Consensus 294 ~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~AG~k--Aa~R-a~e~~l~~l~~g~~v~vv~LP~G~DPD 360 (648)
.+|.++-..+++++..|++..-+.|+++-.+.--.. .... .... ..+.|+...-..+|++.=|+
T Consensus 8 ~l~gs~~P~~~~~~~~l~~~gi~~Iv~L~~~~e~~~~~~~~~~~~~~---~~~~gi~~~~~pi~D~~~P~ 74 (161)
T 2i6j_A 8 TIGGSGLPYTENEILEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSI---LKKNGLQPLHIPIPDGGVPS 74 (161)
T ss_dssp TEEEECCCSSHHHHHHHHHHTCCEEEECSCHHHHHHHHSCHHHHHHH---HHHTTCEEEECCCCTTCCCC
T ss_pred EEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCHHCCCCHHHHHHH---HHHCCCEEEEEECCCCCCCC
T ss_conf 68987799999999999977998999888886302204532668999---99879979996338999979
No 69
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=42.44 E-value=11 Score=14.89 Aligned_cols=12 Identities=8% Similarity=-0.017 Sum_probs=4.8
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999818858
Q gi|254780834|r 89 VQRLAAIAGVPL 100 (648)
Q Consensus 89 ~~~la~~~gi~~ 100 (648)
.+.+....|..+
T Consensus 89 ~~~~~~~~~~~~ 100 (405)
T 2gag_B 89 WEQLPEDLEYDF 100 (405)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHCCCE
T ss_conf 999998747612
No 70
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Probab=42.22 E-value=8.8 Score=15.62 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=13.5
Q ss_pred EEECCCCCCCCHHHHHH
Q ss_conf 67136888878989989
Q gi|254780834|r 62 YYCFSCHVKGDHLSFLS 78 (648)
Q Consensus 62 ~~cf~c~~~gd~~~f~~ 78 (648)
-=..|||.|||...|..
T Consensus 38 VLDlGCG~G~dl~k~~~ 54 (313)
T 3bgv_A 38 VLDLGCGKGGDLLKWKK 54 (313)
T ss_dssp EEEETCTTTTTHHHHHH
T ss_pred EEEEECCCCHHHHHHHH
T ss_conf 99973477688999996
No 71
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=41.91 E-value=12 Score=14.43 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=49.2
Q ss_pred EEEEECCHHHHHHHH-HCC-CCCCHHHHHCCCCHHHHHHHHHC-CCEEEEEECCCCC-------CH----HHHHHHHHHH
Q ss_conf 089971438899987-435-54211343213662678988512-6818996178866-------22----5777888888
Q gi|254780834|r 273 FIILVEGYMDVLSLC-QAG-VQNVVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDP-------GL----RAAYKAIDLV 338 (648)
Q Consensus 273 ~~i~vEGy~Dvi~l~-~~G-~~n~va~~Gtalt~~~~~~l~r~-~~~vvl~fDgD~A-------G~----kAa~Ra~e~~ 338 (648)
+-.+-....+.|... +.| +..++.|-|+.+|++.+..|+.. .++|.+.+||..+ |. ..++++++.
T Consensus 76 EPllr~d~~~~i~~~~~~~~~~~~~~Tng~ll~~~~~~~L~~~gl~~v~ISld~~~~e~~~~i~g~~g~~~~~~~~i~~- 154 (340)
T 1tv8_A 76 EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDY- 154 (340)
T ss_dssp CGGGSTTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCCHHHHHHHHHH-
T ss_pred CHHCCHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCCCCHHHHHHHHH-
T ss_conf 6200700699998752102210242107865342138999984998885046776588887765105650000379999-
Q ss_pred HHHHHCCCCEEE--EECCC
Q ss_conf 777536973067--52578
Q gi|254780834|r 339 LCHLIPGNRVNF--VLLSR 355 (648)
Q Consensus 339 l~~l~~g~~v~v--v~LP~ 355 (648)
+.+.|+.|++ +.++.
T Consensus 155 --~~~~g~~v~in~vv~~~ 171 (340)
T 1tv8_A 155 --ATSIGLNVKVNVVIQKG 171 (340)
T ss_dssp --HHHTTCEEEEEEEECTT
T ss_pred --HHHCCCCEEEEEEECCC
T ss_conf --99879987999897488
No 72
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, microfluidic labcard, PSI-2; 1.70A {Burkholderia pseudomallei STRAIN1710B} PDB: 3cez_A
Probab=41.59 E-value=6.7 Score=16.72 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=5.1
Q ss_pred CCCHHHHCCCCCC
Q ss_conf 6885351012442
Q gi|254780834|r 148 GIDSHAIEMFKLG 160 (648)
Q Consensus 148 g~~~~~~~~f~lG 160 (648)
-++.+-...+.-|
T Consensus 60 pfsg~y~~~~~~G 72 (164)
T 3cxk_A 60 PFTGEYTDTEDAG 72 (164)
T ss_dssp TTCSTTTTCCCSE
T ss_pred CCCCCCCCCCCCE
T ss_conf 9866786898987
No 73
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=41.59 E-value=6.5 Score=16.86 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=4.0
Q ss_pred CHHHHHHHHHH
Q ss_conf 97999999999
Q gi|254780834|r 84 SFIESVQRLAA 94 (648)
Q Consensus 84 ~f~ea~~~la~ 94 (648)
++.||++..++
T Consensus 134 nLGEALRRI~E 144 (305)
T 2nv1_A 134 DLGEATRRIAE 144 (305)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHH
T ss_conf 72899998860
No 74
>1yn9_A BVP, polynucleotide 5'-phosphatase; RNA triphosphatase, cysteine phosphatase, P-loop, hydrolase; HET: PO4; 1.50A {Autographa californicanucleopolyhedrovirus}
Probab=40.43 E-value=10 Score=14.99 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=6.0
Q ss_pred CCCEEEEECC
Q ss_conf 7858885010
Q gi|254780834|r 214 RGQVIAFGGR 223 (648)
Q Consensus 214 ~g~~i~f~gR 223 (648)
..++|+|.+-
T Consensus 19 ~~r~i~~k~P 28 (169)
T 1yn9_A 19 DSNLICFKTP 28 (169)
T ss_dssp TSSEEEECCC
T ss_pred CCEEEEECCC
T ss_conf 9869885276
No 75
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=39.86 E-value=11 Score=14.58 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHCCCHHHHHHH
Q ss_conf 67525788888899720366889988
Q gi|254780834|r 349 NFVLLSRGEDPDSFIRCYGKTAFEKL 374 (648)
Q Consensus 349 ~vv~LP~G~DPDe~ir~~G~eaf~~l 374 (648)
..|.||+|+|.+||+-.+-.+-|..+
T Consensus 65 ~aVklP~g~d~nEWlAv~~~dFfn~i 90 (236)
T 2hjn_A 65 QAVKLPRGEDENEWLAVHCVDFYNQI 90 (236)
T ss_dssp -CCSCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98369199871320899999999999
No 76
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=39.82 E-value=10 Score=14.97 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHCCCH
Q ss_conf 7888888997203668899886414992
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVESLPL 381 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A~~l 381 (648)
-+..||++++.++|+|+++-.+..+-+.
T Consensus 601 GNvi~P~~ii~~yGaD~lRl~~~~~~~~ 628 (917)
T 1ffy_A 601 GNVIVPDQVVKQKGADIARLWVSSTDYL 628 (917)
T ss_dssp SCCCCHHHHHHHTCHHHHHHHHHTSCTT
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHCCCC
T ss_conf 8977956753430816999999709854
No 77
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=39.52 E-value=13 Score=14.14 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 778888887775369
Q gi|254780834|r 331 AYKAIDLVLCHLIPG 345 (648)
Q Consensus 331 a~Ra~e~~l~~l~~g 345 (648)
++|.++++.+.++.+
T Consensus 161 tlrVL~l~e~wL~~~ 175 (269)
T 2px2_A 161 TLRILEMVSDWLSRG 175 (269)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 789999999997028
No 78
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=39.43 E-value=13 Score=14.13 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=52.3
Q ss_pred CEEEEECCHHHHHH-HHHCCCCCCHHHHHCCCCHHH-HHHHHHCCCEEEEEECCCCC---------CHHH----HHHHHH
Q ss_conf 70899714388999-874355421134321366267-89885126818996178866---------2257----778888
Q gi|254780834|r 272 SFIILVEGYMDVLS-LCQAGVQNVVSSLGTALTEYQ-LRLLWKLSPRIVLCFDGDDP---------GLRA----AYKAID 336 (648)
Q Consensus 272 ~~~i~vEGy~Dvi~-l~~~G~~n~va~~Gtalt~~~-~~~l~r~~~~vvl~fDgD~A---------G~kA----a~Ra~e 336 (648)
++-++-....+.|. +++.|+...+.|.||-++... +.......+.|.+.+||-.. +.+. .+++++
T Consensus 151 GEPll~p~l~eli~~~~~~gi~~~l~TNGtl~~~~~~l~~~~~~~~~l~vSLDa~~~e~~~ki~r~~~~~~~ervl~~L~ 230 (342)
T 2yx0_A 151 GEPMLYPYMGDLVEEFHKRGFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLE 230 (342)
T ss_dssp SCGGGSTTHHHHHHHHHHTTCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 77534555999999998639649996588661179999987478867998357899899998737667677999999999
Q ss_pred HHHHHHHCCCC--EEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 88777536973--067525788888899720366889988641499
Q gi|254780834|r 337 LVLCHLIPGNR--VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 337 ~~l~~l~~g~~--v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648)
+ +.+.|.. +++..++.--| +-.++|.++++.+.|
T Consensus 231 ~---L~~~g~~~vir~tlv~g~N~-------~ei~~~a~li~~~~p 266 (342)
T 2yx0_A 231 L---MRDLPTRTVVRLTLVKGENM-------HSPEKYAKLILKARP 266 (342)
T ss_dssp H---HTTCSSEEEEEEEECTTTTC-------CCHHHHHHHHHHHCC
T ss_pred H---HHHCCCCEEEEEEEECCCCH-------HHHHHHHHHHHHCCC
T ss_conf 9---99669988999999689876-------669999999986599
No 79
>2waq_N DNA-directed RNA polymerase RPO10 subunit; multi-subunit, transcription; 3.35A {Sulfolobus shibatae} PDB: 2wb1_N 2pmz_N 3hkz_N
Probab=38.76 E-value=13 Score=14.05 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=10.7
Q ss_pred EECCCCC-CCCHHHHHHH
Q ss_conf 7136888-8789899898
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLSA 79 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~~ 79 (648)
.||+||+ =||.+..+.+
T Consensus 6 RCFTCGkvia~k~~~y~~ 23 (66)
T 2waq_N 6 RCFTCGSLIADKWQPFIT 23 (66)
T ss_dssp SCTTTCCCCGGGHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
T ss_conf 657786418998999999
No 80
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=38.11 E-value=9.9 Score=15.17 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=18.1
Q ss_pred EECCCCCCCCCCEEEECCCCEEEECCCCC
Q ss_conf 53458888587879817897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~~~~~~~~cf~c~~ 69 (648)
-.|||.+-.. .--..-|+|+|=.|+.
T Consensus 27 y~CpfCgk~~---vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 27 YDCSFCGKKT---VKRGAAGIWTCSCCKK 52 (72)
T ss_dssp BCCSSCCSSC---BSBCSSSCBCCSSSCC
T ss_pred CCCCCCCCCE---EEEEEEEEEECCCCCC
T ss_conf 4099999977---7889888987389898
No 81
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=37.47 E-value=14 Score=13.89 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.3
Q ss_pred HHHHHCCCHHHHHHHHHH
Q ss_conf 899720366889988641
Q gi|254780834|r 360 DSFIRCYGKTAFEKLIVE 377 (648)
Q Consensus 360 De~ir~~G~eaf~~ll~~ 377 (648)
++|++++ ++..+.+++-
T Consensus 246 ~~~~~~n-Pe~v~afv~A 262 (417)
T 2g29_A 246 ADWVDQN-PKAAKALLMA 262 (417)
T ss_dssp HHHHHHC-HHHHHHHHHH
T ss_pred HHHHHHC-HHHHHHHHHH
T ss_conf 8988539-8999999999
No 82
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=37.37 E-value=12 Score=14.25 Aligned_cols=25 Identities=20% Similarity=0.393 Sum_probs=17.3
Q ss_pred EECCCCCCCCCCEEEE-CCCCEEEECCCCC
Q ss_conf 5345888858787981-7897467136888
Q gi|254780834|r 41 ACCPFHDEKTPSFHCN-DSKGFYYCFSCHV 69 (648)
Q Consensus 41 ~~cPfh~ektpsf~v~-~~~~~~~cf~c~~ 69 (648)
-.|||.+-.. |- ..-|+|+|=.||.
T Consensus 28 y~Cp~Cgk~~----vkR~a~GIW~C~~C~~ 53 (73)
T 1ffk_W 28 YKCPVCGFPK----LKRASTSIWVCGHCGY 53 (73)
T ss_pred CCCCCCCCCE----EEEEEEEEEECCCCCC
T ss_conf 6099899977----7889988987479999
No 83
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=36.45 E-value=14 Score=13.76 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.3
Q ss_pred EEEEEEEECCCCEEEEE
Q ss_conf 16888970778588850
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFG 221 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~ 221 (648)
|..-||+|..|++||.-
T Consensus 103 ~~~~PV~~~~G~viGvV 119 (131)
T 1p0z_A 103 RGKSPIQDATGKVIGIV 119 (131)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEEEECCCCCEEEEE
T ss_conf 99993898999799999
No 84
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=36.03 E-value=14 Score=13.71 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 579999999998854
Q gi|254780834|r 399 DERAELEIHLKNCIN 413 (648)
Q Consensus 399 e~ka~~~~~l~~~I~ 413 (648)
..|..+.+.|+..+.
T Consensus 260 ~Nk~~A~~~L~~kL~ 274 (354)
T 3d5a_X 260 KNREKALMILRSRLL 274 (354)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999999
No 85
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=35.97 E-value=14 Score=13.70 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=34.7
Q ss_pred CCHHHHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCC-CCCHHHHHHHHHHHH
Q ss_conf 14388999-874355421134321366267898851268189961788-662257778888887
Q gi|254780834|r 278 EGYMDVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD-DPGLRAAYKAIDLVL 339 (648)
Q Consensus 278 EGy~Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD-~AG~kAa~Ra~e~~l 339 (648)
++.++.+. +.++|++-||+| |-++++|...+...+.++-+++-+- .=|.+...+.++.+.
T Consensus 83 ~~~~~~~~~~~~~~~p~ViGT--TG~~~~~~~~~~~~~~~~~vl~apNfSlGv~ll~~l~~~aa 144 (273)
T 1dih_A 83 EGTLNHLAFCRQHGKGMVIGT--TGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAA 144 (273)
T ss_dssp HHHHHHHHHHHHTTCEEEECC--CCCCHHHHHHHHHHTTTSCEEECSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEC--CCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999996287679954--79860137788776337725637706588999999999999
No 86
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA; 1.67A {Homo sapiens}
Probab=35.94 E-value=14 Score=13.70 Aligned_cols=25 Identities=16% Similarity=0.379 Sum_probs=13.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 9899898859997999999999818
Q gi|254780834|r 73 HLSFLSALLGCSFIESVQRLAAIAG 97 (648)
Q Consensus 73 ~~~f~~~~~~~~f~ea~~~la~~~g 97 (648)
++-++|.+.|+++.+|++.+..+-+
T Consensus 103 v~ayLm~~~~~s~~~A~~~vr~~R~ 127 (151)
T 2e0t_A 103 VLAYLMLYHHLTLVEAIKKVKDHRG 127 (151)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 9999999819999999999998189
No 87
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=35.61 E-value=14 Score=13.68 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=7.3
Q ss_pred CCCEEEECCCCC
Q ss_conf 897467136888
Q gi|254780834|r 58 SKGFYYCFSCHV 69 (648)
Q Consensus 58 ~~~~~~cf~c~~ 69 (648)
++|+|+|-+||.
T Consensus 17 e~G~Y~C~~Cg~ 28 (124)
T 2kao_A 17 EPGVYVCAKCSY 28 (124)
T ss_dssp CCCEEEESSSCC
T ss_pred CCEEEEECCCCC
T ss_conf 985999379998
No 88
>3f62_A Interleukin 18 binding protein; immunoglobulin, IL-18, beta trefoil, cytokine, secreted; 2.00A {Ectromelia virus}
Probab=35.44 E-value=11 Score=14.93 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=14.8
Q ss_pred CCCCCEEEECCCCEEEECCCCCCC
Q ss_conf 858787981789746713688887
Q gi|254780834|r 48 EKTPSFHCNDSKGFYYCFSCHVKG 71 (648)
Q Consensus 48 ektpsf~v~~~~~~~~cf~c~~~g 71 (648)
-|-|.+.+...-|-|||-||-++-
T Consensus 6 ~kc~nl~ivtssgef~csgcv~~m 29 (109)
T 3f62_A 6 TKCPNLDIVTSSGEFHCSGCVEHM 29 (109)
T ss_dssp CCSCCCEEEEETTEEEEEEEECSS
T ss_pred CCCCCCCEEECCCCEEECHHHHHC
T ss_conf 338983268136828863155428
No 89
>2c46_A MRNA capping enzyme; guanylyltransferase, phosphatase, transferase, alternative splicing, hydrolase, mRNA processing, multifunctional enzyme; 1.6A {Homo sapiens} PDB: 1i9s_A 1i9t_A
Probab=35.44 E-value=14 Score=13.84 Aligned_cols=40 Identities=8% Similarity=0.002 Sum_probs=17.4
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 99998530233145799999999988541799899999999999998
Q gi|254780834|r 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 (648)
Q Consensus 386 ~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L 432 (648)
.-++.....+ ++++-....+..+ |..+.+..|++.+..+.
T Consensus 160 ~aYLm~~~~~-s~~eAi~~~~~~R------P~~i~k~~yl~~L~~~y 199 (241)
T 2c46_A 160 CAFLVEKMDW-SIEAAVATFAQAR------PPGIYKGDYLKELFRRY 199 (241)
T ss_dssp HHHHHHTTCC-CHHHHHHHHHHHS------TTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHC------CCCCCCHHHHHHHHHHH
T ss_conf 9999997299-9999999999878------99779989999999997
No 90
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=34.73 E-value=14 Score=13.66 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.4
Q ss_pred EEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 168889707785888501001465
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGGRTLSKG 228 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~gR~l~~~ 228 (648)
|+|+-+++..|+.+-||+.+.+.+
T Consensus 9 ~~ll~l~~~~G~~lP~Ga~V~~~~ 32 (94)
T 3l48_A 9 RLFAILRLADGSQPPFGASVTSEK 32 (94)
T ss_dssp CEEEEEEETTSCCCCTTCEEECTT
T ss_pred EEEEEEECCCCCCCCCCCEEECCC
T ss_conf 999999944888989865999599
No 91
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=34.46 E-value=15 Score=13.51 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=10.2
Q ss_pred EECCCCC-CCCHHHHHH
Q ss_conf 7136888-878989989
Q gi|254780834|r 63 YCFSCHV-KGDHLSFLS 78 (648)
Q Consensus 63 ~cf~c~~-~gd~~~f~~ 78 (648)
.||+||+ =||.+..+.
T Consensus 6 RCFTCgkvi~~k~~~y~ 22 (70)
T 1twf_J 6 RCFSCGKVVGDKWESYL 22 (70)
T ss_dssp BCTTTCCBCTTCHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
T ss_conf 65788706488899999
No 92
>1ev0_A MINE; topological specificity, cell division, mincd, minicell, cell cycle; NMR {Escherichia coli} SCOP: d.71.1.1
Probab=34.36 E-value=8.1 Score=15.97 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHCCCEECCC
Q ss_conf 788899999874888887541222101588
Q gi|254780834|r 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKT 32 (648)
Q Consensus 3 i~~~~i~~i~~~~~i~~vv~~~v~l~~~g~ 32 (648)
..++++..++. +|.+||+.||+....+-
T Consensus 4 ~~Pd~Lp~Lk~--eIl~VI~KYv~Id~d~v 31 (58)
T 1ev0_A 4 AEPHYLPQLRK--DILEVICKYVQIDPEMV 31 (58)
T ss_dssp GTTSSHHHHHH--HHHHHHHHHSCCCGGGE
T ss_pred CCCHHHHHHHH--HHHHHHHHHEEECHHHE
T ss_conf 88333999999--99999987387547986
No 93
>3cwf_A Alkaline phosphatase synthesis sensor protein PHOR; PAS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 2.20A {Bacillus subtilis subsp}
Probab=34.26 E-value=9.5 Score=15.31 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=22.7
Q ss_pred EEEEEEECCCCEE-EEECCCCCCCCCCEECCCCCCCCCCCC--HHCCCH
Q ss_conf 6888970778588-850100146553001038767653521--011081
Q gi|254780834|r 206 LIFPIRSSRGQVI-AFGGRTLSKGESVKYLNSPETILFHKG--KNLYNF 251 (648)
Q Consensus 206 i~fPi~~~~g~~i-~f~gR~l~~~~~~KYlNSpeT~if~K~--~~Ly~l 251 (648)
+-..+.|..|+|+ +||||.-+ ++..|-+-|.+.-+-+|. ++.||+
T Consensus 49 ~~vsvidtkG~vlyhsggR~Ad-~q~V~al~S~~eg~~s~~d~kvyyg~ 96 (122)
T 3cwf_A 49 VSASVIDTDGKVLYGSNGRSAD-SQKVQALVSGHEGILSTTDNKLYYGL 96 (122)
T ss_dssp CEEEEEETTSCEEEETTSSCCC-HHHHHHHHTTCCEECCC-CSCCEEEE
T ss_pred CEEEEECCCCCEEEECCCCCCC-HHHHHHHHCCCCCEECCCCCCEEEEE
T ss_conf 4068971788688714996400-78899987253533278766269867
No 94
>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}
Probab=33.82 E-value=15 Score=13.43 Aligned_cols=24 Identities=4% Similarity=0.213 Sum_probs=11.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 989989885999799999999981
Q gi|254780834|r 73 HLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 73 ~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
++.|+|.+.++++.+|++.+..+-
T Consensus 101 v~aYLm~~~~~~~~~Al~~v~~~R 124 (165)
T 1wrm_A 101 VIAYIMTVTDFGWEDALHTVRAGR 124 (165)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 999999981999999999999989
No 95
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.97A {Archaeoglobus fulgidus}
Probab=33.74 E-value=15 Score=13.42 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=27.3
Q ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEE-CCCC
Q ss_conf 681899617-886622577788888877753697306752-5788
Q gi|254780834|r 314 SPRIVLCFD-GDDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRG 356 (648)
Q Consensus 314 ~~~vvl~fD-gD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~-LP~G 356 (648)
..+|+++.| |-+...+|...|++++... |-.+.++. +|.+
T Consensus 24 ~~~IlVavD~~S~~s~~al~~A~~~A~~~---~~~l~lvhv~~~~ 65 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLR---GVPVYVVHSLPGG 65 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH---TCCEEEEEEECCS
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEEECCC
T ss_conf 47389998795989999999999999983---9969999974388
No 96
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=33.70 E-value=15 Score=13.42 Aligned_cols=15 Identities=7% Similarity=0.219 Sum_probs=7.0
Q ss_pred HHHHHHHHCCCCCCH
Q ss_conf 889998743554211
Q gi|254780834|r 281 MDVLSLCQAGVQNVV 295 (648)
Q Consensus 281 ~Dvi~l~~~G~~n~v 295 (648)
+|+-.|.+.||+.+|
T Consensus 26 ~~~~~L~~~gI~~VI 40 (161)
T 3emu_A 26 HNVDYIHNNNISSIL 40 (161)
T ss_dssp GCHHHHHHTTEEEEE
T ss_pred CCHHHHHHCCCCEEE
T ss_conf 799999988993999
No 97
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human papillomavirus type 16} SCOP: b.121.6.1
Probab=33.64 E-value=15 Score=13.41 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=11.8
Q ss_pred CCCCCCCEEEEEEEE---CCCCEEEEE
Q ss_conf 000016716888970---778588850
Q gi|254780834|r 198 SYDRFRNRLIFPIRS---SRGQVIAFG 221 (648)
Q Consensus 198 ~~d~Fr~Ri~fPi~~---~~g~~i~f~ 221 (648)
.||.=+.|+++-++- .+|+..|.|
T Consensus 90 ~ynPe~eRLVW~l~GieigRG~PLGvg 116 (505)
T 1dzl_A 90 FYNPDTQRLVWACVGVEVGRGQPLGVG 116 (505)
T ss_dssp TSCTTTEEEEEEEEEEEEEECSCSBCC
T ss_pred CCCCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 779876567778888982378888126
No 98
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=33.24 E-value=16 Score=13.36 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5799999999988541
Q gi|254780834|r 399 DERAELEIHLKNCINH 414 (648)
Q Consensus 399 e~ka~~~~~l~~~I~~ 414 (648)
..|..+.+.|+..+..
T Consensus 265 ~Nk~~A~~~L~~kl~~ 280 (360)
T 2b3t_B 265 KNKAKALSVLGARIHA 280 (360)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 99
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=33.22 E-value=16 Score=13.36 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 189961788662257778888887775369730675257888
Q gi|254780834|r 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 (648)
Q Consensus 316 ~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~ 357 (648)
++.+.+-.-.-|-..+..++++++.....|.+|++.+.-+|.
T Consensus 3 k~~ii~~~~P~~~~~~~~al~~Ala~~~~~~~V~vff~~dGV 44 (119)
T 2d1p_B 3 RIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV 44 (119)
T ss_dssp CEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGG
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf 699996789998778999999999998379967999924099
No 100
>2q05_A Late protein H1, dual specificity protein phosphatase; structural genomics, APC7320, PSI-2, protein structure initiative; HET: MSE; 2.57A {Vaccinia virus WR}
Probab=32.90 E-value=16 Score=13.32 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=26.9
Q ss_pred CCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEE
Q ss_conf 6787089971438899987435542113432136626789885126818996
Q gi|254780834|r 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 (648)
Q Consensus 269 ~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~ 320 (648)
.++.+-+.|||.||--+++..=+-.....+=++.++ ..+.|.+++++|-
T Consensus 11 ~~~~~~~~~~~~~d~~~~y~~~~~~~~~~~~~~~~p---~~~t~I~~~LYLG 59 (195)
T 2q05_A 11 SSGRENLYFQGHMDKKSLYKYLLLRSTGDMHRAKSP---TIMTRVTNNVYLG 59 (195)
T ss_dssp CCC----CCTTTSCHHHHHHHHHHHHTTCCCCCCBC---CSCEECSSSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC---CCCEEEECCEEEC
T ss_conf 650666777740558888889999850687766799---8853777987899
No 101
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=32.19 E-value=16 Score=13.23 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=19.1
Q ss_pred ECCCCC-CCCCCEEEECCC--CEEEECCCCCC
Q ss_conf 345888-858787981789--74671368888
Q gi|254780834|r 42 CCPFHD-EKTPSFHCNDSK--GFYYCFSCHVK 70 (648)
Q Consensus 42 ~cPfh~-ektpsf~v~~~~--~~~~cf~c~~~ 70 (648)
-|||.+ |++=+..+.-.. +.-+|-.||..
T Consensus 25 ~CPfCnh~~sV~v~idkk~~ig~l~C~vCg~~ 56 (85)
T 1wii_A 25 TCPFCNHEKSCDVKMDRARNTGVISCTVCLEE 56 (85)
T ss_dssp CCTTTCCSSCEEEEEETTTTEEEEEESSSCCE
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEEEEECCCE
T ss_conf 19978998759999993379899998507882
No 102
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, PSI, MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=32.18 E-value=16 Score=13.22 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=46.7
Q ss_pred HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCC-------C--HHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 87435542113432136626789885126818996178866-------2--25777888888777536973067525788
Q gi|254780834|r 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP-------G--LRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 (648)
Q Consensus 286 l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~A-------G--~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G 356 (648)
+.+.|+..+|-|.|+- ..+.+..+..+.+.+.+.+|+-.. | ..-.++.+..+... .....++++.+|.-
T Consensus 28 ~k~~g~~~~l~TNG~l-~~e~~~~~~~~~d~~~~sl~~~~~e~~~~i~g~~~~~v~~~i~~l~~~-~~~v~~~~~vi~~~ 105 (182)
T 3can_A 28 CGQQGIHRAVDTTLLA-RKETVDEVMRNCELLLIDLKSMDSTVHQTFCDVPNELILKNIRRVAEA-DFPYYIRIPLIEGV 105 (182)
T ss_dssp HHHTTCCEEEECTTCC-CHHHHHHHHHTCSEEEEECCCSCHHHHHHHHSSCSHHHHHHHHHHHHT-TCCEEEEEEECBTT
T ss_pred HHHCCCCEEEECCCCC-CHHHHHHHHHHHHHEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCCEEEEEEEECCC
T ss_conf 9887991999817752-489999854322325414233689999988499889999889999971-98505789887886
Q ss_pred CC-HHHH
Q ss_conf 88-8899
Q gi|254780834|r 357 ED-PDSF 362 (648)
Q Consensus 357 ~D-PDe~ 362 (648)
.| .+++
T Consensus 106 ~~~~~~i 112 (182)
T 3can_A 106 NADEKNI 112 (182)
T ss_dssp TCSHHHH
T ss_pred CCCHHHH
T ss_conf 5999999
No 103
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=31.65 E-value=15 Score=13.43 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCCCEEEECCCCCCC-CHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 789746713688887-898998988599979999999998
Q gi|254780834|r 57 DSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAI 95 (648)
Q Consensus 57 ~~~~~~~cf~c~~~g-d~~~f~~~~~~~~f~ea~~~la~~ 95 (648)
|..|-|||.-|+..- +-..|..+..+-.....|+.|.+.
T Consensus 46 PG~Gq~yC~~C~k~F~s~~~~~~H~ksKkHKrrvk~l~e~ 85 (124)
T 1zr9_A 46 PGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVE 85 (124)
T ss_dssp GGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSC
T ss_pred CCCCCEEHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 8988486150549169989999997120999999985237
No 104
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.48 E-value=16 Score=13.13 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 579999999998854
Q gi|254780834|r 399 DERAELEIHLKNCIN 413 (648)
Q Consensus 399 e~ka~~~~~l~~~I~ 413 (648)
..|..+.+.++..+.
T Consensus 282 ~Nk~~A~~~L~~~l~ 296 (365)
T 1gqe_A 282 KNKDQAMKQMKAKLY 296 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 789999999999999
No 105
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=31.18 E-value=17 Score=13.09 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCEEEEEECCCCCCHHHHHHHH-HHHHHHHHCCC-CEEEEECCCC
Q ss_conf 6789885126818996178866225777888-88877753697-3067525788
Q gi|254780834|r 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGN-RVNFVLLSRG 356 (648)
Q Consensus 305 ~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~-e~~l~~l~~g~-~v~vv~LP~G 356 (648)
+-.++|.||-+++ .||.-|.=|-.|..=|. -.++......+ +.|||++-.|
T Consensus 241 ~af~il~~yr~~~-~~fnDDiqGTaav~lAgll~Alki~gk~l~d~riv~~GAG 293 (564)
T 1pj3_A 241 NAFRFLRKYREKY-CTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAG 293 (564)
T ss_dssp HHHHHHHHHTTTS-SEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCS
T ss_pred CHHHHHHHHHHCC-CEECCCCHHHHHHHHHHHHHHHHHHCCCCHHCEEEEECCC
T ss_conf 1899999971048-7544430017899999999999996898111469996443
No 106
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=30.83 E-value=17 Score=13.05 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=14.9
Q ss_pred EEEEEEECCCCEEEEECCC
Q ss_conf 6888970778588850100
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRT 224 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR~ 224 (648)
-+.||+|..|++++|-+=.
T Consensus 86 ~~~pi~d~~G~i~~~v~~~ 104 (110)
T 1byw_A 86 DVVPVKNEDGAVIMFILNF 104 (110)
T ss_dssp EEEEEECTTCCEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEE
T ss_conf 9899998998999999999
No 107
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=30.36 E-value=17 Score=12.99 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998724127989999999999999999999884
Q gi|254780834|r 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648)
Q Consensus 591 L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648)
|-.++..++.-|.++...+.-|...-|-.-|++++.+..+.+.
T Consensus 25 LlqQi~~Ik~yI~QAk~a~r~dEV~~Le~NLreLq~e~~~qq~ 67 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQT 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999943408999999999999999999875
No 108
>2wv9_A Flavivirin protease NS2B regulatory subunit, flavivirin protease NS3 catalytic subunit...; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=30.10 E-value=17 Score=12.95 Aligned_cols=16 Identities=38% Similarity=0.681 Sum_probs=11.3
Q ss_pred EEEECCCCEEEEECCC
Q ss_conf 8970778588850100
Q gi|254780834|r 209 PIRSSRGQVIAFGGRT 224 (648)
Q Consensus 209 Pi~~~~g~~i~f~gR~ 224 (648)
||.|..|+|||+.|--
T Consensus 192 Pi~~~~g~vvgl~~~~ 207 (673)
T 2wv9_A 192 PIVNSNGEIIGLYGNG 207 (673)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred CEECCCCCEEEEEEEE
T ss_conf 7089998199997138
No 109
>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* 3ag3_F* ...
Probab=30.08 E-value=17 Score=12.95 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=6.8
Q ss_pred CEEEECCCCEEEECCCC
Q ss_conf 87981789746713688
Q gi|254780834|r 52 SFHCNDSKGFYYCFSCH 68 (648)
Q Consensus 52 sf~v~~~~~~~~cf~c~ 68 (648)
-|.+..++. ..|+-||
T Consensus 71 W~~l~~g~p-~RC~eCG 86 (98)
T 1v54_F 71 WFWLHKGEA-QRCPSCG 86 (98)
T ss_dssp EEEEESSSC-EECTTTC
T ss_pred EEEEECCCC-CCCCCCC
T ss_conf 899867996-3458778
No 110
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=30.01 E-value=17 Score=12.94 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=27.3
Q ss_pred HHCCCEEEEEECCCCCC-HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHH
Q ss_conf 51268189961788662-25777888888777536973067525788888899
Q gi|254780834|r 311 WKLSPRIVLCFDGDDPG-LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 (648)
Q Consensus 311 ~r~~~~vvl~fDgD~AG-~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ 362 (648)
-.-++.+|.+|||..+| -.-+.+.+... ..+.|..|.++ |||++
T Consensus 128 vd~sd~liavyDg~~~ggt~~~~~~A~k~--a~~~~~pv~~I------~pd~l 172 (181)
T 2nx2_A 128 IDKSDGLLLLYDPEKEGSPKYMLGTAEKR--REQDGYPIYFI------TMDDL 172 (181)
T ss_dssp HHHSSEEEEECCTTTCCTTHHHHHHHHHH--HHHHCCCEEEE------CHHHH
T ss_pred HHHCCEEEEEECCCCCCCCHHHHHHHHHH--HHHCCCEEEEE------CHHHH
T ss_conf 98678899998587899808999999999--98169807997------29999
No 111
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=29.93 E-value=14 Score=13.65 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=11.2
Q ss_pred CHHHHHHHHHHHHCCCCCC
Q ss_conf 9799999999981885877
Q gi|254780834|r 84 SFIESVQRLAAIAGVPLPV 102 (648)
Q Consensus 84 ~f~ea~~~la~~~gi~~~~ 102 (648)
.|.+++..=-+..||.-++
T Consensus 76 e~~~~I~edL~WLGl~wDe 94 (553)
T 1qtq_A 76 EYVESIKNDVEWLGFHWSG 94 (553)
T ss_dssp HHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999977998998
No 112
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii OT3}
Probab=29.76 E-value=17 Score=12.91 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=15.4
Q ss_pred CCEEEEECCHHHHHHHHHCCCCCCH
Q ss_conf 8708997143889998743554211
Q gi|254780834|r 271 SSFIILVEGYMDVLSLCQAGVQNVV 295 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~l~~~G~~n~v 295 (648)
.+.+|++.|..........|+...+
T Consensus 194 a~~~v~~~g~~~~~~~~~~~~~~~~ 218 (382)
T 1y56_B 194 TGIVVNATNAWANLINAMAGIKTKI 218 (382)
T ss_dssp CSEEEECCGGGHHHHHHHHTCCSCC
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 4058871243344320003765412
No 113
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=29.50 E-value=18 Score=12.87 Aligned_cols=24 Identities=0% Similarity=0.086 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHH
Q ss_conf 788888899720366889988641
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVE 377 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~ 377 (648)
-+..||++++.++|+|+++-++-.
T Consensus 351 GN~i~p~~~i~~ygaD~lR~~ll~ 374 (560)
T 3h99_A 351 GTFIKASTWLNHFDADSLRYYYTA 374 (560)
T ss_dssp TCCCBHHHHHHHSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 867889999874181899999998
No 114
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=29.14 E-value=18 Score=12.82 Aligned_cols=37 Identities=22% Similarity=0.495 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCC
Q ss_conf 999999999997-3267775789999850688535101
Q gi|254780834|r 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEM 156 (648)
Q Consensus 120 ~~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~ 156 (648)
+.+-|..|-++- ..+..-..-+.||++.||+++-|+.
T Consensus 12 li~~Av~FL~~p~V~~sp~~~K~~FL~sKGLt~~EI~~ 49 (54)
T 3ff5_A 12 LIATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDL 49 (54)
T ss_dssp HHHHHHHHHHCTTGGGSCHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 99999999568413008789999999986999999999
No 115
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=29.05 E-value=18 Score=12.81 Aligned_cols=14 Identities=14% Similarity=-0.088 Sum_probs=5.4
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 59997999999999
Q gi|254780834|r 81 LGCSFIESVQRLAA 94 (648)
Q Consensus 81 ~~~~f~ea~~~la~ 94 (648)
..+||.+=+...-+
T Consensus 61 ~~ISy~~LL~~F~~ 74 (313)
T 3e0m_A 61 KEVSLREILLYYFR 74 (313)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
T ss_conf 64899999999864
No 116
>1svp_A Sindbis virus capsid protein; chymotrypsin-like serine, mutant, coat protein, viral protein; 2.00A {Sindbis virus} SCOP: b.47.1.3 PDB: 1kxb_A 1kxa_A 2snw_A 1kxc_A 1kxd_A 1kxe_A 2snv_A 1z8y_Q 1wyk_A
Probab=29.01 E-value=18 Score=12.81 Aligned_cols=21 Identities=24% Similarity=0.691 Sum_probs=13.9
Q ss_pred EEEEEECCCCEEE----EECCCCCC
Q ss_conf 8889707785888----50100146
Q gi|254780834|r 207 IFPIRSSRGQVIA----FGGRTLSK 227 (648)
Q Consensus 207 ~fPi~~~~g~~i~----f~gR~l~~ 227 (648)
+||+.++.|+|.| .|||++.+
T Consensus 10 tf~v~~edG~v~GyA~~vg~kv~KP 34 (161)
T 1svp_A 10 LFDVKNEDGDVIGHALAMEGKVMKP 34 (161)
T ss_dssp EEEEECTTSCEEEEEEEETTEEEEE
T ss_pred CCCCCCCCCCEEEEEEEECCEEECC
T ss_conf 5653134784577889874753023
No 117
>3iyj_F Major capsid protein L1; bovine papillomavirus BPV1, single particle cryo-EM, high resolution, late protein, virion; 4.20A {Bovine papillomavirus type 1}
Probab=28.87 E-value=16 Score=13.30 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=5.7
Q ss_pred ECCCC--EEEECC
Q ss_conf 17897--467136
Q gi|254780834|r 56 NDSKG--FYYCFS 66 (648)
Q Consensus 56 ~~~~~--~~~cf~ 66 (648)
+|++. .|.|=|
T Consensus 88 nP~~eRLVW~l~G 100 (495)
T 3iyj_F 88 NPSKERLVWAVIG 100 (495)
T ss_dssp CTTTEEEEEEEEE
T ss_pred CCCCCEEEEEEEE
T ss_conf 9876567778888
No 118
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A, structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii OT3}
Probab=28.71 E-value=18 Score=12.77 Aligned_cols=37 Identities=11% Similarity=-0.017 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 6818996178866225777888888777536973067525
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
-++|.++.|+.+...+|...|++++. ..|..+.++..
T Consensus 5 ~k~ILv~vD~S~~s~~a~~~a~~la~---~~~a~l~llhV 41 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNK---MEVGEVILLHV 41 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCC---SCCSEEEEEEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHH---HCCCEEEEEEE
T ss_conf 59799997499899999999999987---63997999999
No 119
>1ep5_B Capsid protein C, coat protein C; beta barrel, hydrolase; 2.30A {Venezuelan equine encephalitis virus} SCOP: b.47.1.3 PDB: 1ep6_A
Probab=28.65 E-value=18 Score=12.76 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=7.3
Q ss_pred EEEECCCCEEE
Q ss_conf 89707785888
Q gi|254780834|r 209 PIRSSRGQVIA 219 (648)
Q Consensus 209 Pi~~~~g~~i~ 219 (648)
||.|-+|+|||
T Consensus 111 pi~DN~GkVVa 121 (157)
T 1ep5_B 111 PILDNQGRVVA 121 (157)
T ss_dssp EEECTTSCEEE
T ss_pred CCCCCCCCEEE
T ss_conf 11768886999
No 120
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5}
Probab=28.29 E-value=18 Score=12.71 Aligned_cols=11 Identities=27% Similarity=0.096 Sum_probs=6.2
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999847
Q gi|254780834|r 484 EAALLLTLINH 494 (648)
Q Consensus 484 E~~LL~llI~~ 494 (648)
.|.|++++-||
T Consensus 390 ~R~l~ailEn~ 400 (425)
T 2dq3_A 390 GRTLAAILENY 400 (425)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
T ss_conf 78999999735
No 121
>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}
Probab=28.26 E-value=18 Score=12.70 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=7.8
Q ss_pred HHHHHHHCCCCCCHH
Q ss_conf 899987435542113
Q gi|254780834|r 282 DVLSLCQAGVQNVVS 296 (648)
Q Consensus 282 Dvi~l~~~G~~n~va 296 (648)
|.-.|.+.||+.+|.
T Consensus 37 ~~~~L~~~gI~~Vin 51 (188)
T 2esb_A 37 NKLMLSSNQITMVIN 51 (188)
T ss_dssp CHHHHHHTTCCEEEE
T ss_pred CHHHHHHCCCEEEEE
T ss_conf 999999859859998
No 122
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ...
Probab=27.98 E-value=16 Score=13.33 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf 36626789885126818996178866225777888-88877753697306752578888889972036688998864
Q gi|254780834|r 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 (648)
Q Consensus 301 alt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~-e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~ 376 (648)
.+|-+|+..+.+.-..=.. ..-.+++.|.+ -.|.++ |+.| +|+||.++...--..++.+++.
T Consensus 95 ~It~~qv~eIAk~K~~d~~-----~~~l~~~vk~VlGTa~Sm---Gi~V------~g~~p~ev~~~i~~Ge~D~~~~ 157 (162)
T 1vq8_I 95 DLSVDQVKQIAEQKHPDLL-----SYDLTNAAKEVVGTCTSL---GVTI------EGENPREFKERIDAGEYDDVFA 157 (162)
T ss_dssp EECHHHHHHHHHHTTTTCC-----CSSHHHHHHHHHHHTTTT---TEEE------C---------------------
T ss_pred EECHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHCC---EEEE------ECCCHHHHHHHCCCHHHHHHHH
T ss_conf 0649999999999714015-----589999999999826325---5999------7788799997617134789998
No 123
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=27.96 E-value=19 Score=12.66 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=39.6
Q ss_pred CHHHHHH-HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECC-CCCCHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 4388999-87435542113432136626789885126818996178-8662257778888887775369730675
Q gi|254780834|r 279 GYMDVLS-LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG-DDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 (648)
Q Consensus 279 Gy~Dvi~-l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDg-D~AG~kAa~Ra~e~~l~~l~~g~~v~vv 351 (648)
+-++.+. +...|++-||+| |-|+++|...+..+++++-+++=+ =.=|.+...+.+..+...+.++.++.|+
T Consensus 100 ~~~~~~~~~~~~~~plViGT--TG~~~~~~~~i~~~~~~~~il~a~NfS~Gv~ll~~~~~~aa~~l~~~~dieI~ 172 (288)
T 3ijp_A 100 ASVLYANYAAQKSLIHIIGT--TGFSKTEEAQIADFAKYTTIVKSGNMSLGVNLLANLVKRAAKALDDDFDIEIY 172 (288)
T ss_dssp HHHHHHHHHHHHTCEEEECC--CCCCHHHHHHHHHHHTTSEEEECSCCCHHHHHHHHHHHHHHHHSCTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 76889999987396079830--55442259999998533988886640077999999999999873522250888
No 124
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=27.95 E-value=19 Score=12.66 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCCCHHHHHHCCCHHHHHHHHHHCCC
Q ss_conf 88888899720366889988641499
Q gi|254780834|r 355 RGEDPDSFIRCYGKTAFEKLIVESLP 380 (648)
Q Consensus 355 ~G~DPDe~ir~~G~eaf~~ll~~A~~ 380 (648)
+..||++++.++|+|+++-++-.+.+
T Consensus 317 N~i~~~~~l~~ygaD~lR~~l~~~~~ 342 (524)
T 2x1l_A 317 NVVDPVNLVDTFGLDQVRYFLLREVP 342 (524)
T ss_dssp ESSCHHHHHHHHCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 54786999986394399999987087
No 125
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=27.64 E-value=19 Score=12.62 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=24.6
Q ss_pred ECCCCCCCCCCEEEECCCCEEEECCCCC--CCCHHH
Q ss_conf 3458888587879817897467136888--878989
Q gi|254780834|r 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHV--KGDHLS 75 (648)
Q Consensus 42 ~cPfh~ektpsf~v~~~~~~~~cf~c~~--~gd~~~ 75 (648)
-||-... +.+.+.+..|-+.|-.||. .-++|+
T Consensus 13 ~Cp~Cgs--~~iv~D~~~Ge~vC~~CG~Vlee~~ID 46 (58)
T 1dl6_A 13 TCPNHPD--AILVEDYRAGDMICPECGLVVGDRVID 46 (58)
T ss_dssp SBTTBSS--SCCEECSSSCCEECTTTCCEECCSCCC
T ss_pred CCCCCCC--CCEEEECCCCEEECCCCCCEECCCCCC
T ss_conf 8969879--877788889918727899892433136
No 126
>1vcp_A Semliki forest virus capsid protein; virus coat protein, polyprotein, transmembrane, glycoprotein, nucleocapsid protein, viral protein; 3.00A {Semliki forest virus} SCOP: b.47.1.3 PDB: 1dyl_A 1vcq_A
Probab=27.34 E-value=19 Score=12.58 Aligned_cols=12 Identities=42% Similarity=0.847 Sum_probs=9.6
Q ss_pred EEEECCCCEEEE
Q ss_conf 897077858885
Q gi|254780834|r 209 PIRSSRGQVIAF 220 (648)
Q Consensus 209 Pi~~~~g~~i~f 220 (648)
||.|-+|||||.
T Consensus 104 pi~DN~GkVVaI 115 (149)
T 1vcp_A 104 PIFDNKGRVVAI 115 (149)
T ss_dssp EEECTTSCEEEE
T ss_pred CCCCCCCCEEEE
T ss_conf 117688879999
No 127
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.26.2.4
Probab=27.24 E-value=19 Score=12.56 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=24.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 818996178866225777888888777536973067525
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
++|.++.|+-+...+|...|++++.. .+..+.++..
T Consensus 18 k~ILV~vD~S~~s~~a~~~a~~lA~~---~~~~~~~~~~ 53 (163)
T 1tq8_A 18 KTVVVGTDGSDSSMRAVDRAAQIAGA---DAKLIIASAY 53 (163)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHTT---TSEEEEEEEC
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHC---CCCEEEEEEE
T ss_conf 96999988998999999999999854---8988999998
No 128
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.03 E-value=19 Score=12.53 Aligned_cols=31 Identities=19% Similarity=0.580 Sum_probs=21.9
Q ss_pred CEEEECCCCCCCCCCEE----EECCCCEEEECCCCCC
Q ss_conf 55753458888587879----8178974671368888
Q gi|254780834|r 38 DYWACCPFHDEKTPSFH----CNDSKGFYYCFSCHVK 70 (648)
Q Consensus 38 ~~~~~cPfh~ektpsf~----v~~~~~~~~cf~c~~~ 70 (648)
.|+ ||..+-+=-++- ++|..+.|+|--|+.-
T Consensus 14 ~y~--Cp~C~k~ys~Lda~~Lld~~~~~F~C~~C~~e 48 (62)
T 1vd4_A 14 SFK--CPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp EEE--CSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CEE--CCCCCCEECHHHHHHHCCCCCCEEEECCCCCE
T ss_conf 438--88988882375598835967891973688999
No 129
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=26.94 E-value=19 Score=12.52 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHH-CCCH
Q ss_conf 788888899720366889988641-4992
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVE-SLPL 381 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~-A~~l 381 (648)
-+..||++++.++|+|+++-.+-. +.+.
T Consensus 534 GNvi~p~~~i~kyGaDalR~~l~~~~~~~ 562 (862)
T 1gax_A 534 GNVIDPLEMVERYGADALRFALIYLATGG 562 (862)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 99799899998819719888888750677
No 130
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=26.84 E-value=19 Score=12.51 Aligned_cols=22 Identities=5% Similarity=0.144 Sum_probs=8.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8998988599979999999998
Q gi|254780834|r 74 LSFLSALLGCSFIESVQRLAAI 95 (648)
Q Consensus 74 ~~f~~~~~~~~f~ea~~~la~~ 95 (648)
+-++|...++++.+|++.+..+
T Consensus 102 ~ayLm~~~~~~~~~A~~~vr~~ 123 (149)
T 1zzw_A 102 IAYLMKHTRMTMTDAYKFVKGK 123 (149)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999998098999999999998
No 131
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=26.32 E-value=20 Score=12.43 Aligned_cols=49 Identities=27% Similarity=0.444 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHCCCCHHHHCCC--CCCCCCCCCCHH
Q ss_conf 99999999997-32677757899998506885351012--442256774103
Q gi|254780834|r 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMF--KLGYAPDSRYSL 169 (648)
Q Consensus 121 ~~~~~~~~~~~-l~~~~~~~a~~yl~~Rg~~~~~~~~f--~lG~ap~~~~~l 169 (648)
.+-|..|-++- ..+..-..-+.+|++.||+++-|+.- +-|.+|+....+
T Consensus 18 i~~Av~FL~dp~V~~sp~~~K~~FL~sKGLt~~EI~~Al~rag~~~~~p~s~ 69 (70)
T 2w84_A 18 IATAVKFLQNSRVRQSPLATRRAFLKKKGLTDEEIDMAFQQSGTAADEPSSL 69 (70)
T ss_dssp HHHHHHHHCSTTGGGSCHHHHHHHHHHTTCCHHHHHHHHHHHTCCCCC----
T ss_pred HHHHHHHHCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999568312018789999999985999999999999825588999877
No 132
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=25.87 E-value=20 Score=12.37 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=16.5
Q ss_pred EEEEEEECCCCEEEEECCCCC
Q ss_conf 688897077858885010014
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR~l~ 226 (648)
-+.||+|..|++.+|-|=.-|
T Consensus 95 ~~~pi~d~~G~~~~~~~v~~D 115 (120)
T 2gj3_A 95 TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEEE
T ss_conf 999999999899999999983
No 133
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=25.75 E-value=20 Score=12.35 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.2
Q ss_pred CCCEEEEECCCC
Q ss_conf 973067525788
Q gi|254780834|r 345 GNRVNFVLLSRG 356 (648)
Q Consensus 345 g~~v~vv~LP~G 356 (648)
.-.||+..+|.|
T Consensus 254 ~sAVRitH~pTG 265 (371)
T 1zbt_A 254 ATAVRIIHLPTN 265 (371)
T ss_dssp CCEEEEEETTTT
T ss_pred CCEEEEEEECCC
T ss_conf 515899993488
No 134
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=25.68 E-value=20 Score=12.34 Aligned_cols=44 Identities=23% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998724127989999999999999999999884
Q gi|254780834|r 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 (648)
Q Consensus 590 ~L~r~l~ele~~l~e~~~~~d~e~~~~l~~el~elk~~L~~l~~ 633 (648)
.|-.++..++.-|.++...+.-|....|-.-|++++....+.+.
T Consensus 6 PllqQi~~Ik~yI~QAr~a~R~dEV~~Le~NLreLq~e~~~qq~ 49 (51)
T 1yzm_A 6 PLLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQT 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999999853428999999999999999999875
No 135
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcription factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=25.61 E-value=20 Score=12.33 Aligned_cols=49 Identities=27% Similarity=0.360 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999998188587768203677788999999999999999997326
Q gi|254780834|r 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 (648)
Q Consensus 86 ~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (648)
.|.|+..|+..||.--..+....-...-.-++-++.+.|.+|.++.-++
T Consensus 9 ~esik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhsKR~ 57 (70)
T 1taf_B 9 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQ 57 (70)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8899999998498888999999989999999999999999999973657
No 136
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia fungorum}
Probab=25.45 E-value=20 Score=12.31 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=4.9
Q ss_pred CCCCEEEEEEEEC
Q ss_conf 0167168889707
Q gi|254780834|r 201 RFRNRLIFPIRSS 213 (648)
Q Consensus 201 ~Fr~Ri~fPi~~~ 213 (648)
+++=.|-||+.|.
T Consensus 91 ~~~v~IayP~~n~ 103 (432)
T 3nwr_A 91 RARITLSFPLANI 103 (432)
T ss_dssp EEEEEEEEEGGGT
T ss_pred EEEEEEECCHHHC
T ss_conf 2799997766863
No 137
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata}
Probab=25.18 E-value=20 Score=12.27 Aligned_cols=36 Identities=22% Similarity=0.359 Sum_probs=28.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 818996178866225777888888777536973067525
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
++|.++.|+....++|...|++++... |-.+.++..
T Consensus 3 ~~ILv~vD~S~~s~~al~~A~~la~~~---~~~l~lv~v 38 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT---GAELYILCV 38 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH---CCEEEEEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE
T ss_conf 849999789999999999999999872---998999998
No 138
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3}
Probab=25.17 E-value=20 Score=12.27 Aligned_cols=27 Identities=11% Similarity=-0.058 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHH-CCC
Q ss_conf 788888899720366889988641-499
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVE-SLP 380 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~-A~~ 380 (648)
-++.||++++.++|+|+++-.+-. +.+
T Consensus 656 GNvvdP~~ii~~yGAD~lRl~l~~~~~~ 683 (967)
T 1wz2_A 656 GNVLNFIDAIEENGADVVRLYIMSLAEH 683 (967)
T ss_dssp CCCCBHHHHHHTTCHHHHHHHHHHHCCT
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 8865477898741998778998536997
No 139
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.03 E-value=12 Score=14.56 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=9.5
Q ss_pred EEEECCCCCCCCHHH
Q ss_conf 467136888878989
Q gi|254780834|r 61 FYYCFSCHVKGDHLS 75 (648)
Q Consensus 61 ~~~cf~c~~~gd~~~ 75 (648)
-|-||-||..|-.|+
T Consensus 7 gYiC~rCg~~GH~Ik 21 (55)
T 2ysa_A 7 GYTCFRCGKPGHYIK 21 (55)
T ss_dssp SCCCTTTCCTTSCGG
T ss_pred CCEEECCCCCCCCEE
T ss_conf 868752799871003
No 140
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=24.89 E-value=21 Score=12.23 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=58.8
Q ss_pred CCHHHHHHCCCHHHHHHHHHH--CCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 888899720366889988641--499279999999853023314579999999998854179989999999999999887
Q gi|254780834|r 357 EDPDSFIRCYGKTAFEKLIVE--SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 (648)
Q Consensus 357 ~DPDe~ir~~G~eaf~~ll~~--A~~l~dFl~~~l~~~~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~ 434 (648)
..+||++.+-|.++++-.+-+ ...-++|=|+.+..... .++ -.|++....|+..
T Consensus 294 ~~l~dll~evg~~airy~~L~~~~~~~~~Fd~~~~~~~~~---------------------gn~---~~YiqYa~aR~~S 349 (464)
T 3fnr_A 294 ILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDS---------------------SNP---VYYINYAHARIHQ 349 (464)
T ss_dssp CBHHHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCST---------------------TSH---HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCC---------------------CCH---HHHHHHHHHHHHH
T ss_conf 5599999997477876665314655555346687754132---------------------214---7899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 65776776433200123555555455664333322223344555303799999999984778899998443002379988
Q gi|254780834|r 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 (648)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~LL~llI~~P~l~~~~~e~l~~~~f~~~~ 514 (648)
.++..... .... .. .. .......|+.|+..++.+|+.+....+.+..... ...
T Consensus 350 Ilrk~~~~-------------~~~~----~~--------~~-~~~l~~~e~~L~~~l~~fp~vl~~a~~~~~P~~l-~~Y 402 (464)
T 3fnr_A 350 VFAKAGKK-------------IDDV----MK--------AD-LQSLNQDGVNLLFEALNLKAVLNDAFEARALQKI-PDY 402 (464)
T ss_dssp HHHHTTCC-------------TTTS----TT--------CC-CTTCCHHHHHHHHHHHTHHHHHHHHHHHTCTTHH-HHH
T ss_pred HHHHHCCC-------------CCCC----CC--------CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-HHH
T ss_conf 99971534-------------3311----12--------55-4218988999999998489999999983781489-999
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99999999999753
Q gi|254780834|r 515 LQKLWSFLFSDFVE 528 (648)
Q Consensus 515 ~~~L~~~i~~~~~~ 528 (648)
+..|....-..|..
T Consensus 403 l~~La~~Fn~fY~~ 416 (464)
T 3fnr_A 403 LKNLAANFHKFYNE 416 (464)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999988713
No 141
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 3kjl_E 3kik_E
Probab=24.77 E-value=6.7 Score=16.71 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCEEEECCCCCCCCCCEEEEC------CCCEEEECCCCCCCCHHHHHHH
Q ss_conf 8999998748888875412221015887777755753458888587879817------8974671368888789899898
Q gi|254780834|r 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND------SKGFYYCFSCHVKGDHLSFLSA 79 (648)
Q Consensus 6 ~~i~~i~~~~~i~~vv~~~v~l~~~g~n~~~~~~~~~cPfh~ektpsf~v~~------~~~~~~cf~c~~~gd~~~f~~~ 79 (648)
.+.++|...+ |.||+.++....+-+.. .+=.+-||+...+|...|.- ....|.|=.||..=-+=.|-.+
T Consensus 14 ~I~~~LL~~~-I~dv~~e~h~~~kl~~~----~~p~~~~~~~~~~~~~DifG~~~~~~~~~~~~C~~C~r~v~~~rfa~H 88 (99)
T 3mhs_C 14 GILNNLLTTL-IQDIVARETTQQQLLKT----RYPDLRSYYFDPNGSLDINGLQKQQESSQYIHCENCGRDVSANRLAAH 88 (99)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHH----HCTTCCCCCCCTTSCSCTTSCCCCCTTSCEEECTTTCCEEEGGGHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
T ss_conf 9999999999-99999999999998740----487653201268888761799588787777588999886427776999
Q ss_pred H
Q ss_conf 8
Q gi|254780834|r 80 L 80 (648)
Q Consensus 80 ~ 80 (648)
.
T Consensus 89 l 89 (99)
T 3mhs_C 89 L 89 (99)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 142
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase/RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=24.65 E-value=18 Score=12.80 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEE
Q ss_conf 10817888864331000023567870899714388999874355421134321366267898851268189
Q gi|254780834|r 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIV 318 (648)
Q Consensus 248 Ly~l~~a~~~~~~~~~~~~~~~~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vv 318 (648)
..|+-.--+.+.+. +.++|..=|.+|.+-+++.=+ ++|=..+. +-.+.+.++-+.|+
T Consensus 267 ~~Gf~~v~~~l~~~---------~kpiVgHN~~~Dl~~~~~~f~----~~LP~~~~-eFk~~v~~~FP~i~ 323 (430)
T 2a1r_A 267 AVGFSRVIHAIANS---------GKLVIGHNMLLDVMHTVHQFY----CPLPADLS-EFKEMTTCVFPRLL 323 (430)
T ss_dssp TSBTHHHHHHHHHH---------CCEEEESSCHHHHHHHHHHHT----CCCCSSHH-HHHHHHHHHCSSEE
T ss_pred CCCHHHHHHHHHHC---------CCCEEECCHHHHHHHHHHHCC----CCCCCCHH-HHHHHHHHHCCCEE
T ss_conf 11278999999865---------997786642888999998715----89997899-99999998767300
No 143
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.46 E-value=21 Score=12.17 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=32.3
Q ss_pred HHHHHCCCCHHHHHHHHH-CC---CEEEEEECCCCCCHH------------HHHHHHHHHH--HHHHCCCCEEEEECCCC
Q ss_conf 134321366267898851-26---818996178866225------------7778888887--77536973067525788
Q gi|254780834|r 295 VSSLGTALTEYQLRLLWK-LS---PRIVLCFDGDDPGLR------------AAYKAIDLVL--CHLIPGNRVNFVLLSRG 356 (648)
Q Consensus 295 va~~Gtalt~~~~~~l~r-~~---~~vvl~fDgD~AG~k------------Aa~Ra~e~~l--~~l~~g~~v~vv~LP~G 356 (648)
|..+-...|+++|+.+.+ +. ..|.+.-|.+..|+. .|.+|++.+. .+.-.|..++|-.-...
T Consensus 13 V~nLp~~~te~~l~~~F~~~G~~i~~v~l~~~~~~~~~~rG~afV~f~~~~~A~~A~~~l~~~~~~~~g~~i~V~~A~p~ 92 (109)
T 2dis_A 13 IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPE 92 (109)
T ss_dssp EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSS
T ss_pred EECCCCCCCHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCCEEECCEEEEEEECCCC
T ss_conf 97989868899999999972955888998751047898531899998899999999998757992789988899972898
Q ss_pred CCHHH
Q ss_conf 88889
Q gi|254780834|r 357 EDPDS 361 (648)
Q Consensus 357 ~DPDe 361 (648)
.+||.
T Consensus 93 ~~~~~ 97 (109)
T 2dis_A 93 IDVDE 97 (109)
T ss_dssp CSTTT
T ss_pred CCCCH
T ss_conf 89897
No 144
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=24.30 E-value=21 Score=12.14 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred CHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHC
Q ss_conf 626789885126818996178866225777888888777536973067525788888899720
Q gi|254780834|r 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 (648)
Q Consensus 303 t~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~ 365 (648)
.......+.++++.+++..+.+......+.++++.+. +.|..+--+.| ++.||+..-+.
T Consensus 204 ~~~d~~~l~~~aD~vilV~~~~~t~~~~~~~~~~~l~---~~~~~i~G~Vl-N~v~~~~~~~~ 262 (271)
T 3bfv_A 204 TVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIE---ATGAKLLGVVL-NRMPKDKSASY 262 (271)
T ss_dssp TCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHH---TTTCEEEEEEE-EEECC------
T ss_pred CHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH---HCCCCEEEEEE-CCCCCCCCCCC
T ss_conf 5789999999799799993886779999999999999---77998089998-89378766675
No 145
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=24.08 E-value=21 Score=12.11 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=16.0
Q ss_pred EEEEEEECCCCEEEEECCCCC
Q ss_conf 688897077858885010014
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR~l~ 226 (648)
.+.|++|..|++.|+-+=..|
T Consensus 97 ~~~p~~d~~g~~~~~i~~~~D 117 (124)
T 3lyx_A 97 MCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EEEEEECSTTCEEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEEEEEE
T ss_conf 888899899999999999999
No 146
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=24.04 E-value=21 Score=12.10 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=16.8
Q ss_pred EEEEEC-CCCEEE--EECCCCCCC
Q ss_conf 889707-785888--501001465
Q gi|254780834|r 208 FPIRSS-RGQVIA--FGGRTLSKG 228 (648)
Q Consensus 208 fPi~~~-~g~~i~--f~gR~l~~~ 228 (648)
-||.|. .|+||| ++|-+|+++
T Consensus 141 ~PIid~~sGeVIG~Ly~~~VLNNN 164 (270)
T 3c38_A 141 SSLIEAGTGQVVGYLYVGIVLNDN 164 (270)
T ss_dssp EEECCCC-CCCCEEEEEEEECTTC
T ss_pred ECCEECCCCCEEEEEEEEEEECCC
T ss_conf 741748987399999999996596
No 147
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=23.66 E-value=22 Score=12.05 Aligned_cols=13 Identities=31% Similarity=0.644 Sum_probs=5.5
Q ss_pred ECCCCCCCCHHHH
Q ss_conf 1368888789899
Q gi|254780834|r 64 CFSCHVKGDHLSF 76 (648)
Q Consensus 64 cf~c~~~gd~~~f 76 (648)
..|||.||+...+
T Consensus 70 DlGCG~G~~~~~~ 82 (298)
T 1ri5_A 70 DLGCGKGGDLLKY 82 (298)
T ss_dssp EETCTTTTTHHHH
T ss_pred EECCCCCHHHHHH
T ss_conf 9637087899999
No 148
>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1
Probab=23.52 E-value=22 Score=12.02 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=9.8
Q ss_pred EEECCH-HHHHHHHH
Q ss_conf 997143-88999874
Q gi|254780834|r 275 ILVEGY-MDVLSLCQ 288 (648)
Q Consensus 275 i~vEGy-~Dvi~l~~ 288 (648)
-|+||+ ||||--.+
T Consensus 192 ~Vi~G~~mdVl~kIe 206 (229)
T 1z81_A 192 RIIDNDSLLLLKKIE 206 (229)
T ss_dssp EECSHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHH
T ss_conf 999587567999975
No 149
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=23.49 E-value=22 Score=12.02 Aligned_cols=20 Identities=20% Similarity=-0.004 Sum_probs=15.6
Q ss_pred EEEEEEEECCCCEEEEECCC
Q ss_conf 16888970778588850100
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGGRT 224 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~gR~ 224 (648)
-.+.||+|..|+++|+-+-.
T Consensus 91 ~~~~pi~d~~G~~~~~i~~~ 110 (114)
T 3luq_A 91 WEVRPWYEGEGRVGGVVIFT 110 (114)
T ss_dssp EEEEEEECTTSCEEEEEEEE
T ss_pred EEEEEEECCCCCEEEEEEEE
T ss_conf 99999999999999999999
No 150
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=23.45 E-value=22 Score=12.01 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=32.3
Q ss_pred CCCEEEEECCHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHCCC-EEEEEECCCCCCHHHHHHH
Q ss_conf 7870899714388999874355421134321366267898851268-1899617886622577788
Q gi|254780834|r 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKA 334 (648)
Q Consensus 270 ~~~~~i~vEGy~Dvi~l~~~G~~n~va~~Gtalt~~~~~~l~r~~~-~vvl~fDgD~AG~kAa~Ra 334 (648)
.+..++||-|..=+-..+.++... +..+.|+..-.++++.+.+ .|++|||... .++|-
T Consensus 17 ~~~~llLIDG~~l~~R~~~~~~~~---~~~~~f~~~l~~l~~~~~p~~i~v~fD~~~----~t~R~ 75 (290)
T 1exn_A 17 SRRNLMIVDGTNLGFRFKHNNSKK---PFASSYVSTIQSLAKSYSARTTIVLGDKGK----SVFRL 75 (290)
T ss_dssp --CEEEEEEHHHHHHHHHHHCSSS---CCHHHHHHHHHHHHHHTTEEEEEEECCBSC----CHHHH
T ss_pred CCCEEEEECCCHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHCCCCEEEEEECCCC----CEECH
T ss_conf 798399991828999999838999---789999999999998729987999986899----72520
No 151
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.44 E-value=20 Score=12.31 Aligned_cols=54 Identities=7% Similarity=-0.033 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHCC----CEEE-EEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf 36626789885126----8189-961788662257778888887775369730675257888888997203
Q gi|254780834|r 301 ALTEYQLRLLWKLS----PRIV-LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648)
Q Consensus 301 alt~~~~~~l~r~~----~~vv-l~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648)
.=|.+-+..|+++. .+++ +.-|.|+.=. ++... =..|.++ -+++..+-|+++..
T Consensus 185 pKTK~~~~~L~~lgl~~~~k~LiV~~~~~enl~----~A~RN-------I~~V~vl-~~~~LNVyDLLk~~ 243 (293)
T 3bbo_G 185 PKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVE----KSGRN-------IRTLKLL-TPRSLNLFDVLNAE 243 (293)
T ss_dssp CSSHHHHTTHHHHSCSSCSSSCCEECCCSSSCC----TTTSS-------SSSCEEC-CSSCCCHHHHHHSS
T ss_pred CCHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH----HHHHC-------CCCCEEE-ECCCEEHHHHHCCC
T ss_conf 669999999985175565625999656618999----99838-------8997586-45970199983798
No 152
>2d69_A Ribulose bisphosphate carboxylase; alpha/beta barrel, structural genomics, NPPSFA; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.1.14.1 d.58.9.1 PDB: 2cxe_A 2cwx_A
Probab=23.36 E-value=22 Score=12.00 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=10.7
Q ss_pred CCCCCCCCCHHHHHHHC-CCCCHHHH
Q ss_conf 42256774103455420-59973452
Q gi|254780834|r 159 LGYAPDSRYSLREHLRQ-KGFSEEKI 183 (648)
Q Consensus 159 lG~ap~~~~~l~~~l~~-~~~~~~~~ 183 (648)
+.|-|...+.+..|-.+ +|++.+..
T Consensus 17 ~~y~~~~~~i~a~Y~~~p~g~~~~~~ 42 (430)
T 2d69_A 17 LNYEPGRDELIVEYYFEPNGVSPEEA 42 (430)
T ss_dssp TTCCCCTTSEEEEEEEEESSSCHHHH
T ss_pred CCCCCCCCEEEEEEEEECCCCCHHHH
T ss_conf 87767775699999970899899999
No 153
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=23.36 E-value=22 Score=12.00 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=28.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 818996178866225777888888777536973067525
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L 353 (648)
++|.+++|+....++|...+++++... +-.+.++..
T Consensus 3 k~ILv~~D~s~~s~~al~~a~~la~~~---~~~i~llhV 38 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH---GARLIVVHA 38 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH---TCEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHC---CCEEEEEEE
T ss_conf 809999889989999999999999983---998999998
No 154
>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=23.19 E-value=22 Score=11.97 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=12.9
Q ss_pred CEEEEE--EEECCCCEEEEECCCCC
Q ss_conf 716888--97077858885010014
Q gi|254780834|r 204 NRLIFP--IRSSRGQVIAFGGRTLS 226 (648)
Q Consensus 204 ~Ri~fP--i~~~~g~~i~f~gR~l~ 226 (648)
+=|+.| -+|..|.=+|+||--.|
T Consensus 117 DlilVP~vafD~~G~RlG~GgGyYD 141 (187)
T 1ydm_A 117 DLMIVPGVCFDVNGFRVGFGGGYYD 141 (187)
T ss_dssp CEEECCCSEEETTSCEECCSCCSTT
T ss_pred CEEEEEEEEECCCCCCCCCCCCHHH
T ss_conf 5156215788577946227864888
No 155
>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}
Probab=23.17 E-value=22 Score=11.97 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHH--CC--CCEEEEECCCCCCHHHH
Q ss_conf 788888877753--69--73067525788888899
Q gi|254780834|r 332 YKAIDLVLCHLI--PG--NRVNFVLLSRGEDPDSF 362 (648)
Q Consensus 332 ~Ra~e~~l~~l~--~g--~~v~vv~LP~G~DPDe~ 362 (648)
+|.++++..++. ++ +-+||+ ....|+.+
T Consensus 163 l~Vlel~~~wl~~~p~g~Fv~KVl---~py~p~vi 194 (265)
T 2oxt_A 163 IKILELLEKWKVKNPSADFVVKVL---CPYSVEVM 194 (265)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEES---CTTSHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE---CCCCHHHH
T ss_conf 799999999982689973999991---58997899
No 156
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=22.96 E-value=22 Score=11.94 Aligned_cols=36 Identities=8% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEECC-CCCCC-CHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 467136-88887-8989989885999799999999981
Q gi|254780834|r 61 FYYCFS-CHVKG-DHLSFLSALLGCSFIESVQRLAAIA 96 (648)
Q Consensus 61 ~~~cf~-c~~~g-d~~~f~~~~~~~~f~ea~~~la~~~ 96 (648)
+-||.. .+.++ =++-++|.+.|+++.+|++.+-.+-
T Consensus 88 LVHC~~G~sRS~~vviaYLm~~~~~s~~~A~~~vr~~R 125 (160)
T 1yz4_A 88 LVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKATR 125 (160)
T ss_dssp EEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHTC
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 76846678754999999999983999999999999979
No 157
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=22.82 E-value=12 Score=14.28 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=9.2
Q ss_pred CCCCCEEEECCCCEEEECCC
Q ss_conf 85878798178974671368
Q gi|254780834|r 48 EKTPSFHCNDSKGFYYCFSC 67 (648)
Q Consensus 48 ektpsf~v~~~~~~~~cf~c 67 (648)
+|.--+.|+..-.+|.|||-
T Consensus 56 ~k~g~l~v~~~~nv~F~fg~ 75 (82)
T 2l02_A 56 RKNGLIEIYNEGHFDFSFGL 75 (82)
T ss_dssp EETTEEEEEEGGGTSCCCCC
T ss_pred EECCEEEEEECCCEEEEECC
T ss_conf 87787999825646788302
No 158
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=22.61 E-value=22 Score=11.89 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=27.0
Q ss_pred CCEEEEECCHHHHHH----HHHCCCCCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 870899714388999----8743554211343213662678988512681899617886
Q gi|254780834|r 271 SSFIILVEGYMDVLS----LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 (648)
Q Consensus 271 ~~~~i~vEGy~Dvi~----l~~~G~~n~va~~Gtalt~~~~~~l~r~~~~vvl~fDgD~ 325 (648)
.+.+|.|-+.-++-. |.+.|+. +++.-|. +.+.....+++-...|++|=|-=+
T Consensus 356 gktLVFv~S~~~aeeLA~~L~~~G~~-v~~LHg~-l~~~e~~k~k~g~~~IIVATdIaE 412 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKSGKR-VIQLSRK-TFDTEYPKTKLTDWDFVVTTDISE 412 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCC-EEEECTT-THHHHTTHHHHSCCSEEEECGGGG
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCE-EEEECCC-CCHHHHHHCCCCCCCEEEECHHHH
T ss_conf 99999979889999999999758980-9991799-987887235689963999906743
No 159
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1, methyltransferase domain, structural genomics; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=22.36 E-value=23 Score=11.85 Aligned_cols=21 Identities=14% Similarity=-0.039 Sum_probs=14.0
Q ss_pred CCCEEEECCCCCCCCHHHHHHH
Q ss_conf 8974671368888789899898
Q gi|254780834|r 58 SKGFYYCFSCHVKGDHLSFLSA 79 (648)
Q Consensus 58 ~~~~~~cf~c~~~gd~~~f~~~ 79 (648)
++.+ -.+|||.|+..+.++.+
T Consensus 24 ~~~V-LDiGcG~G~~~~~~~~~ 44 (209)
T 2p8j_A 24 DKTV-LDCGAGGDLPPLSIFVE 44 (209)
T ss_dssp CSEE-EEESCCSSSCTHHHHHH
T ss_pred CCEE-EEEECCCCHHHHHHHHH
T ss_conf 8989-99727889999999985
No 160
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding protein; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D
Probab=22.29 E-value=23 Score=11.84 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
Q ss_conf 5999799999999981885877682036777889999999999999999973267775789999850
Q gi|254780834|r 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER 147 (648)
Q Consensus 81 ~~~~f~ea~~~la~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~yl~~R 147 (648)
++++ ..|++.||.++|+.-=..+....-...-...+.++...+..|-++.=+.+-...-..|.-+|
T Consensus 9 ~~I~-k~~IkRlar~~Gv~rvs~d~~~~l~~~le~~l~~I~~~a~~~a~hakRKTvt~~DV~~ALkR 74 (84)
T 2hue_C 9 QGIT-KPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 74 (84)
T ss_dssp CSSC-HHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred CCCC-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 8868-89999999977923047999999999999999999999999986618864669999999997
No 161
>3f2k_A Histone-lysine N-methyltransferase setmar; histone-lysine N-methyltransferase setmar, SET domain and mariner transposase fusion; 1.85A {Homo sapiens}
Probab=22.24 E-value=23 Score=11.83 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=57.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH-HHHHHHHHC
Q ss_conf 8189961788662257778888887775369730675257888888997203668899886414992799-999998530
Q gi|254780834|r 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM-LWKRETENR 393 (648)
Q Consensus 315 ~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dF-l~~~l~~~~ 393 (648)
..++|..|+..+......+.. ++ ...+.++.+|. .=|| ...+|| +|..+....
T Consensus 123 ~~~i~~~DnA~~H~s~~v~~~------l~-~~~i~~l~~Pp-~SPD------------------LNPIE~~lW~~lK~~v 176 (226)
T 3f2k_A 123 KGPILLHDNARPHVAQPTLQK------LN-ELGYEVLPHPP-YSPD------------------LLPTNYHVFKHLNNFL 176 (226)
T ss_dssp CCCEEECCCCHHHHSTTHHHH------HH-HHTCEECCCCT-TCGG------------------GCHHHHTHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHH------HH-HCCEEECCCCC-CCCC------------------CCHHHHHHHHHHHHHH
T ss_conf 767999738641245999999------98-47877705899-9988------------------4367889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23314579999999998854179989999999999999887
Q gi|254780834|r 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 (648)
Q Consensus 394 dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~~ 434 (648)
.-..+..+..+.+.+......|+.+.++..+ +.+-.|+..
T Consensus 177 ~~~~~~~~~~L~~~i~~~w~~i~~~~~~~li-~sm~~R~~~ 216 (226)
T 3f2k_A 177 QGKRFHNQQDAENAFQEFVESQSTDFYATGI-NQLISRWQK 216 (226)
T ss_dssp TTCBCSSHHHHHHHHHHHHHTSCTTHHHHHH-HHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHH
T ss_conf 8247999999999999999958999999999-989999999
No 162
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex, single-stranded DNA, isomerase/DNA complex; HET: DNA; 2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A* 2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Probab=22.07 E-value=23 Score=11.80 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3799999999984
Q gi|254780834|r 481 SLREAALLLTLIN 493 (648)
Q Consensus 481 ~~~E~~LL~llI~ 493 (648)
...|..|+..|-+
T Consensus 490 ryTEasLi~~Me~ 502 (659)
T 1i7d_A 490 HFTDATLLSAMTG 502 (659)
T ss_dssp CEEHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
T ss_conf 8788999999986
No 163
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, gelsolin, structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1jhw_A
Probab=22.03 E-value=23 Score=11.79 Aligned_cols=51 Identities=22% Similarity=0.390 Sum_probs=28.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC--CCCEEEEECCCCCCHHHHHHCCC
Q ss_conf 8996178866225777888888777536--97306752578888889972036
Q gi|254780834|r 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIP--GNRVNFVLLSRGEDPDSFIRCYG 367 (648)
Q Consensus 317 vvl~fDgD~AG~kAa~Ra~e~~l~~l~~--g~~v~vv~LP~G~DPDe~ir~~G 367 (648)
.++..=|-.+-..--.+|.+++..+... +-...+..+.+|.+|++|.+..|
T Consensus 172 ~iyvW~Gk~s~~~Er~~A~~iA~~i~~~e~~~~~~i~~v~eG~E~~eFw~~lg 224 (347)
T 1j72_A 172 NIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVLG 224 (347)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHTTSCCSSCEEEEEETTCCCHHHHHHHC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHCC
T ss_conf 57999899999999999999999975424378860899858877289998617
No 164
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=21.85 E-value=23 Score=11.77 Aligned_cols=25 Identities=32% Similarity=0.346 Sum_probs=20.3
Q ss_pred CCCCCHHHHHHCCCHHHHHHHHHHC
Q ss_conf 7888888997203668899886414
Q gi|254780834|r 354 SRGEDPDSFIRCYGKTAFEKLIVES 378 (648)
Q Consensus 354 P~G~DPDe~ir~~G~eaf~~ll~~A 378 (648)
-++.||++.|.++|+|+++-.+-.+
T Consensus 597 GNvi~p~~ii~~yGaD~lRl~l~~~ 621 (821)
T 1ile_A 597 GNVVDPWDIIRKFGADALRWYIYVS 621 (821)
T ss_dssp TCCCCHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHCC
T ss_conf 9989989998654988999976205
No 165
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=21.63 E-value=23 Score=11.73 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=26.9
Q ss_pred HHHHHHHCCCCCHHHHHHHCCCEECCCCCCCCCCCCCEEEEEEEEC-CCCEEEEECCC
Q ss_conf 0345542059973452320121003465410000167168889707-78588850100
Q gi|254780834|r 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS-RGQVIAFGGRT 224 (648)
Q Consensus 168 ~l~~~l~~~~~~~~~~~~~gl~~~~~~~~~~~d~Fr~Ri~fPi~~~-~g~~i~f~gR~ 224 (648)
.+.++|...|.+......-+++. |-.|| .-++|=+... .|..|+=|||-
T Consensus 251 ~l~~~l~~~~~~~~i~~Dl~lvr----gl~YY----tG~vFe~~~~~~g~~I~~GGRY 300 (400)
T 3od1_A 251 KLYEVLESYGASEYVKFDLTLVL----HMSYY----TGVVFEGYGNRLGVPLCSGGRY 300 (400)
T ss_dssp HHHHHHHHTTCGGGEEEETTCCS----CSSSC----CSEEEEEEETTCSSEEEEEEEC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCC----CCCCC----CCCEEEEEECCCCCEEEECCCH
T ss_conf 99999987498212233723367----86725----6705999947978857735344
No 166
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=21.51 E-value=23 Score=11.71 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=56.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHHH-HHHHHHHH
Q ss_conf 68189961788662257778888887775369730675257888888997203668899886414992799-99999853
Q gi|254780834|r 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM-LWKRETEN 392 (648)
Q Consensus 314 ~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~dF-l~~~l~~~ 392 (648)
..+++|..|+..+......+.. +. ...+.++++|. .=|| ...+|+ +|..+...
T Consensus 241 ~~~~~l~~DNa~~H~s~~v~~~------l~-~~~i~~~~~Pp-ySPd------------------LNPIE~~~W~~lK~~ 294 (345)
T 3hot_A 241 QHRVIFLHDNAPSHTARAVRDT------LE-TLNWEVLPHAA-YSPD------------------LAPSDYHLFASMGHA 294 (345)
T ss_dssp -CCCEEECCCCTTTTSHHHHHH------HH-HTTCEECCCCT-TCGG------------------GCHHHHTHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHH------HH-HCCCEEECCCC-CCCC------------------CCCHHHHHHHHHHHH
T ss_conf 7628999668766656899999------99-71966405999-9977------------------674559999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 02331457999999999885417998999999999999988
Q gi|254780834|r 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 (648)
Q Consensus 393 ~dl~spe~ka~~~~~l~~~I~~I~d~~~R~~yl~~la~~L~ 433 (648)
.--..+.....+...+......|+.+.++..+- .+-.++.
T Consensus 295 l~~~~~~~~~~L~~~i~~~w~~i~~~~~~~~i~-s~~~R~~ 334 (345)
T 3hot_A 295 LAEQRFDSYESVKKWLDEWFAAKDDEFYWRGIH-KLPERWE 334 (345)
T ss_dssp HTTCCCSSHHHHHHHHHHHHHHSCSHHHHHHHH-HHHHHHH
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHH
T ss_conf 854799999999999999999669999999998-8999999
No 167
>2k4q_A Major tail protein V; GPV, bacteriophage lambda, viral protein; NMR {Enterobacteria phage lambda}
Probab=21.48 E-value=24 Score=11.71 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 18996178866225777888888777536973067525788
Q gi|254780834|r 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 (648)
Q Consensus 316 ~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~LP~G 356 (648)
.+.+.+|.+.||+.|-..+.+. ..-..+| +.+|+|
T Consensus 84 slti~~dP~~~gq~aL~aa~~s-----~~~~~~r-i~~p~G 118 (156)
T 2k4q_A 84 SFTLAWMPGEQGQQALLAWFNE-----GDTRAYK-IRFPNG 118 (156)
T ss_dssp EEEEEECTTCCCHHHHHHHHHH-----TCCEEEE-EECTTS
T ss_pred EEEEEECCCCHHHHHHHHHHHC-----CCEEEEE-EECCCC
T ss_conf 8998768984789999999857-----9969999-990799
No 168
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=21.41 E-value=22 Score=11.93 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=10.4
Q ss_pred EEEEEEEECCCCEEEEECCCC
Q ss_conf 168889707785888501001
Q gi|254780834|r 205 RLIFPIRSSRGQVIAFGGRTL 225 (648)
Q Consensus 205 Ri~fPi~~~~g~~i~f~gR~l 225 (648)
.++.-|.+..|++--|...+.
T Consensus 85 ~~~~~i~~~~g~~~~~~~~i~ 105 (150)
T 1jnr_B 85 DIMWTVKYRNGKVLRFKFAIR 105 (150)
T ss_dssp EEEEEEECTTSCEEEEEEECC
T ss_pred CCEEEEEECCCCEEEECCEEE
T ss_conf 314789842474322021267
No 169
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyw_K 1s1i_K
Probab=21.19 E-value=24 Score=11.66 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH-HHHHHHHHCCCCEEEEECCCCCCHHHHHHCC
Q ss_conf 36626789885126818996178866225777888-8887775369730675257888888997203
Q gi|254780834|r 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 (648)
Q Consensus 301 alt~~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~-e~~l~~l~~g~~v~vv~LP~G~DPDe~ir~~ 366 (648)
.+|-+|+..+.+.-.. |--.--.+|+.|.+ -.|.++ |++| +|+||-|+.+.-
T Consensus 103 ~It~~qv~eIAk~K~~-----dl~~~~l~~a~k~V~GTArSM---GI~V------eG~dPkev~~~i 155 (165)
T 2zkr_i 103 NITFDEIVNIARQMRH-----RSLARELSGTIKEILGTAQSV---GCNV------DGRHPHDIIDDI 155 (165)
T ss_dssp EECHHHHHHHHHHHTT-----TCCCSSHHHHHHHHHHHHHHH---TEEE------C-----------
T ss_pred EECHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHEEHEEE---EEEE------ECCCHHHHHHHH
T ss_conf 3539999999995441-----014799999999855566034---6898------578989999997
No 170
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A
Probab=21.11 E-value=24 Score=11.65 Aligned_cols=10 Identities=20% Similarity=0.670 Sum_probs=4.8
Q ss_pred EEEEEEECCC
Q ss_conf 6888970778
Q gi|254780834|r 206 LIFPIRSSRG 215 (648)
Q Consensus 206 i~fPi~~~~g 215 (648)
|++..|-..|
T Consensus 114 i~Tn~HVv~~ 123 (264)
T 1kxf_A 114 RLFDVKNEDG 123 (264)
T ss_dssp CEEEEECTTC
T ss_pred EECCCCEECC
T ss_conf 8766504267
No 171
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=21.11 E-value=24 Score=11.65 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=6.3
Q ss_pred CCCCCHHHHHCC
Q ss_conf 554211343213
Q gi|254780834|r 290 GVQNVVSSLGTA 301 (648)
Q Consensus 290 G~~n~va~~Gta 301 (648)
|-...|++||.-
T Consensus 280 ~~~~~~~~m~CR 291 (605)
T 1h7b_A 280 GSSVPVSPMGCR 291 (605)
T ss_dssp CCSSCCCCBTTT
T ss_pred CCCCCCCCCCCH
T ss_conf 888663678752
No 172
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=21.09 E-value=24 Score=11.64 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHC
Q ss_conf 379999999998477889999844300
Q gi|254780834|r 481 SLREAALLLTLINHPAILQEQYQELAD 507 (648)
Q Consensus 481 ~~~E~~LL~llI~~P~l~~~~~e~l~~ 507 (648)
...|+.|+..|..+|+.+......++.
T Consensus 521 ~~~e~~L~~~L~~fp~vv~~a~~~~eP 547 (607)
T 1f7u_A 521 EPAAKLLIRLLGQYPDVLRNAIKTHEP 547 (607)
T ss_dssp SHHHHHHHHHHTTHHHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999999999899999999995984
No 173
>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A
Probab=20.90 E-value=24 Score=11.61 Aligned_cols=10 Identities=20% Similarity=0.245 Sum_probs=5.5
Q ss_pred CC-CCCHHHHH
Q ss_conf 78-88888997
Q gi|254780834|r 354 SR-GEDPDSFI 363 (648)
Q Consensus 354 P~-G~DPDe~i 363 (648)
|. |..|+++.
T Consensus 148 P~~GLsp~~~a 158 (413)
T 2oem_A 148 GMIGRDLAYLT 158 (413)
T ss_dssp SCTTCCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 87899978999
No 174
>1m93_C Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1 PDB: 1c8o_B 1f0c_B
Probab=20.81 E-value=24 Score=11.60 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=17.3
Q ss_pred EEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 688897077858885010014655
Q gi|254780834|r 206 LIFPIRSSRGQVIAFGGRTLSKGE 229 (648)
Q Consensus 206 i~fPi~~~~g~~i~f~gR~l~~~~ 229 (648)
-+|=|+|..|. |=|-||..++..
T Consensus 18 FlF~Ir~~t~~-iLF~Grv~~P~s 40 (41)
T 1m93_C 18 FIYVIRHVDGK-ILFVGRYSSPTT 40 (41)
T ss_dssp EEEEEEETTSC-EEEEEEECSCC-
T ss_pred EEEEEEECCCC-EEEEEECCCCCC
T ss_conf 99999938996-999888048889
No 175
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, pyridoxal-5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis S2} SCOP: c.67.1.9
Probab=20.59 E-value=24 Score=11.56 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=35.5
Q ss_pred CCCHHHHHCCCCHHHHHHHHH--CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC-CCC----CCHHHH
Q ss_conf 421134321366267898851--26818996178866225777888888777536973067525-788----888899
Q gi|254780834|r 292 QNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL-SRG----EDPDSF 362 (648)
Q Consensus 292 ~n~va~~Gtalt~~~~~~l~r--~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~~v~vv~L-P~G----~DPDe~ 362 (648)
..++-|.||+.+..-.....+ ...+.|++-+-| .++..+++.. .|+.+.+|.. |++ .||+++
T Consensus 151 ~~~~~~~~T~~~~~l~l~a~~~~~~~~~Vi~~~~~---h~S~~kai~~------~G~~~~~v~~~~~~~~~~~d~~~l 219 (456)
T 2z67_A 151 HAIATPISTGMSISLCLSAARKKYGSNVVIYPYAS---HKSPIKAVSF------VGMNMRLVETVLDGDRVYVPVEDI 219 (456)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCC---CHHHHHHHHH------TTCEEEEECCEEETTEEECCHHHH
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCC---HHHHHHHHHH------CCCEEEEEEEEECCCCCCCCHHHH
T ss_conf 33770436899999999996216899999981624---3999999998------499179987565485567799999
No 176
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=20.40 E-value=25 Score=11.53 Aligned_cols=18 Identities=11% Similarity=0.360 Sum_probs=13.8
Q ss_pred CCEEEECCCCEEEECCCC
Q ss_conf 787981789746713688
Q gi|254780834|r 51 PSFHCNDSKGFYYCFSCH 68 (648)
Q Consensus 51 psf~v~~~~~~~~cf~c~ 68 (648)
=.|.|+.+.+..+||.|+
T Consensus 86 H~~~~~~~~~~vwCy~Cd 103 (126)
T 2i50_A 86 HCLVLSLDNWSVWCYVCD 103 (126)
T ss_dssp CCEEEETTTCCEEETTTT
T ss_pred CEEEEECCCCCEEECCCC
T ss_conf 639998899978878999
No 177
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.39 E-value=25 Score=11.53 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=52.8
Q ss_pred EEEEECCHHHHHH-----HHHCCCCCCHHHHHCCCCH-HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 0899714388999-----8743554211343213662-678988512681899617886622577788888877753697
Q gi|254780834|r 273 FIILVEGYMDVLS-----LCQAGVQNVVSSLGTALTE-YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 (648)
Q Consensus 273 ~~i~vEGy~Dvi~-----l~~~G~~n~va~~Gtalt~-~~~~~l~r~~~~vvl~fDgD~AG~kAa~Ra~e~~l~~l~~g~ 346 (648)
.++||+-.-.+.. |.+.|.-.+| |+|-+. +=+..+.+....++++ |=.=.|.+ +++++..+.+...
T Consensus 17 rVLIvDD~~~~r~~l~~~L~~~~~~~vv---~~a~~~~eal~~~~~~~pDvvll-Dl~mp~~~----G~el~~~ir~~~~ 88 (152)
T 3eul_A 17 RVVVGDDHPLFREGVVRALSLSGSVNVV---GEADDGAAALELIKAHLPDVALL-DYRMPGMD----GAQVAAAVRSYEL 88 (152)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSSEEEE---EEESSHHHHHHHHHHHCCSEEEE-ETTCSSSC----HHHHHHHHHHTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEE---EEECCHHHHHHHHHHCCCCEEEE-CCCCCCCC----HHHHHHHHHHHCC
T ss_conf 8999949999999999999859895799---99899999999998469999998-18999989----9999999997589
Q ss_pred CEEEEECCCCCCHHHHHHCCCHHHHHHHHHHCCCHHH
Q ss_conf 3067525788888899720366889988641499279
Q gi|254780834|r 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 (648)
Q Consensus 347 ~v~vv~LP~G~DPDe~ir~~G~eaf~~ll~~A~~l~d 383 (648)
.++|+.+-...||+...+.. ..+...++.+..+..+
T Consensus 89 ~~~vivlS~~~~~~~~~~a~-~~Ga~~yl~Kp~~~~~ 124 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQAL-QQGAAGFLLKDSTRTE 124 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHH-HTTCSEEEETTCCHHH
T ss_pred CCEEEEEECCCCHHHHHHHH-HCCCCEEEECCCCHHH
T ss_conf 98599996869999999999-8699899979999999
Done!