HHSEARCH alignment of GI: 254780834 and SCOP domain: d1t3wa_

Alignment
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=96.58  E-value=0.014  Score=39.23  Aligned_cols=107  Identities=15%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             HHHHHHHHHCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999998477889999844300237998899999999999753889998999988511128999999999865433320
Q gi|254780834|r  485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS  564 (648)
Q Consensus       485 ~~LL~llI~~P~l~~~~~e~l~~~~f~~~~~~~L~~~i~~~~~~~~~~~~~~l~~~L~~~~l~elL~~L~~~~~~~~~~~  564 (648)
                      +.+|+++|+||++...+.+......+.++.. .+...+++.+..++..+...+..+..+....+.+..+......     
T Consensus         6 r~aI~lLL~~P~La~~~~~~~~l~~~~~~~~-~lL~~L~~~~~~~p~~~t~~Lle~~r~t~~~~~L~~La~~e~~-----   79 (134)
T d1t3wa_           6 RILIGLLVQNPELATLVPPLENLDENKLPGL-GLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDI-----   79 (134)
T ss_dssp             HHHHHHHHHCGGGGGGCCCCTTSCGGGSTTH-HHHHHHHHHHHTSTTCCHHHHHHTTCSGGGHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHCHHHHHCCCCHHHHHHCCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC-----
T ss_conf             9999999869397752984667754568221-9999999999868999999999987098699999999866556-----


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             25689988999999999999985899999999999999
Q gi|254780834|r  565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI  602 (648)
Q Consensus       565 ~~~e~~~~d~~e~~~~~l~l~~r~~~L~r~l~ele~~l  602 (648)
                          .+..+....+.+++.-..+. ..+.++.++....
T Consensus        80 ----~~~~~~~~ef~d~l~~l~~~-~~~~~~~~L~~k~  112 (134)
T d1t3wa_          80 ----ADKNIAEQTFTDSLNHMFDS-LLELRQEELIARE  112 (134)
T ss_dssp             ----HHHHHHHHHHHHHHHTTTHH-HHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_conf             ----88178999999999999998-9999999998653


SCOP domain information

class: All alpha proteins
fold: DNA primase DnaG, C-terminal domain
superfamily: DNA primase DnaG, C-terminal domain
family: DNA primase DnaG, C-terminal domain
domain: DNA primase DnaG, C-terminal domain
species: Escherichia coli [TaxId: 562]