BLAST/PSIBLAST alignment of GI: 254780834 and GI: 209550283 at iteration 1
>gi|209550283|ref|YP_002282200.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 666
>gi|209536039|gb|ACI55974.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 666
 Score =  628 bits (1620), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/662 (48%), Positives = 430/662 (64%), Gaps = 16/662 (2%)

Query: 1   MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60
           M +   F+ D+   +PISN+I + V WD+RKTN  +GDYWACCPFH EK+PSFHC D KG
Sbjct: 1   MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60

Query: 61  FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120
            Y+CF C V GDH  FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK +  LI +
Sbjct: 61  RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120

Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
           +E+AT FF   L+ A   R   YL +RG+    IE F+LGYAPDSR +L+E+L  KG ++
Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEYLAGKGVTK 180

Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240
           E+I   GL++  +N   SYDRFR+R++FPI SSR +VIAFGGR +S     KYLNS ET 
Sbjct: 181 EQIEACGLVVH-ENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETE 239

Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVR-RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299
           LFHKG  LYNF  A   +Q   R D +  N+S  II VEGYMDV++L QAG++N V+ LG
Sbjct: 240 LFHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLG 299

Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
           TALTE QL LLWK+ P+ VLCFDGD  G+RAA +A +L L HL PG  V F LL  G+DP
Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359

Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419
           D  +R  G+  F+K++ ++ PL +MLW RE     F+TP+ RAELE  LK  +  I D+ 
Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADEN 419

Query: 420 LRYYYSQAIRDRLQQLFQKYITEH--------SGYGRYWKKNARHRDQKGP---SQRLMQ 468
           +R +Y Q IRDRL   FQ              SG  R  + NA     K P   S RL +
Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLAR 479

Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDF 526
           S  V+G      +LRE+ L LT++NHP+++ + Y E+A I YD+ EL++LWS     +  
Sbjct: 480 SGPVRGHRDNT-ALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAA 538

Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586
           V   +   E + +RL   GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +K
Sbjct: 539 VAGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHK 598

Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646
           R + L RQK E+E++IA  T  G+ E    L+    EVH +  ++E+QEA+I+GFG +SG
Sbjct: 599 RAKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGVLSG 658

Query: 647 RL 648
           R+
Sbjct: 659 RV 660