PSIBLAST alignment of GI: 254780834 and protein with PDB id: 2au3
>gi|83754038|pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc Binding And Rna Polymerase Domains) Length = 407
Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats.
Identities = 133/440 (30%), Positives = 202/440 (45%), Gaps = 37/440 (8%)
Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65
I +L I I ++I +Y++ ++ +N Y CPFH + TPSF+ + SK + CF
Sbjct: 5 SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCF 59
Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125
C V GD + F+S S+ E+ LA G L +K + ++
Sbjct: 60 GCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKL------DLEKISKDEKVYVALDRVC 113
Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185
DF+ SL R+ Y+ RGID F LGYAP S ++ K +
Sbjct: 114 DFYRESLLKNREASE--YVKSRGIDPKVARKFDLGYAPSSEALVKVL---KENDLLEAYL 168
Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245
+ D F R++ PI+ RG+VI FGGR + + +S KY+NSP++ +F KG
Sbjct: 169 ETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKG 228
Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
+NL+ + A Y++ F ILVEGY D+L L G++NVV+ LGTALT+
Sbjct: 229 ENLFGLYEAKEYIK----------EEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQN 278
Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
Q LL K + ++ + +DGDD G +A AI L L G V V L G DPD FI+
Sbjct: 279 QANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKE 335
Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425
+GK +LI S L + L K + E + + I D R+ +
Sbjct: 336 FGKEELRRLINSSGELFETLIKTAR--------ENLEEKTREFRYYLGFISDGVRRFALA 387
Query: 426 QAIRDRLQQLFQKYITEHSG 445
+ + + + +
Sbjct: 388 SEFHTKYKVPMEILLMKIEK 407