BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] (648 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] gi|254040511|gb|ACT57307.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 648/648 (100%), Positives = 648/648 (100%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG Sbjct: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL Sbjct: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE Sbjct: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI Sbjct: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT Sbjct: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD Sbjct: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL Sbjct: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP Sbjct: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR Sbjct: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK Sbjct: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL Sbjct: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 >gi|227822812|ref|YP_002826784.1| DNA primase [Sinorhizobium fredii NGR234] gi|227341813|gb|ACP26031.1| DNA primase [Sinorhizobium fredii NGR234] Length = 663 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 294/665 (44%), Positives = 419/665 (63%), Gaps = 25/665 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PIS++IG+ V WDRRKTN +GDYWACCPFH EK+PSFHC D K Sbjct: 1 MRFSPSFLDEIRDRVPISDVIGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKS 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P DP+ E++E+ +T L+ + Sbjct: 61 RYHCFGCGVSGDHFRFLTDLEGLSFPEAVQQIADMAGVPMPQPDPQAERRERERTSLLDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL ERG+ IE F+LG+APDSR +L+E L K + Sbjct: 121 MELATQFFQDQLQAATGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKSVGK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G + SYDRFR+R++FPI S+R +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVVHGPDVPVSYDRFRDRIMFPILSAREKVIAFGGRAMSADAPAKYLNSNETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+NF A R + + II VEGYMDV++L QAG++N V+ LGT Sbjct: 241 LFHKGNVLFNFARAR-------RASQGADGTGTIIAVEGYMDVIALHQAGLENAVAPLGT 293 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++ + VLCFDGD G+RAA +A+DL L HL PG V F +L G+DPD Sbjct: 294 ALTENQLDLLWKMTAQPVLCFDGDGAGIRAANRAVDLALPHLKPGRSVRFAMLPDGKDPD 353 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F+K++ + L DM+W RE + F+TP++RAELE L+ + + D+ + Sbjct: 354 DLVRHEGREPFDKVLANARSLADMVWMREVQGGGFDTPEKRAELEARLRQVTSVVGDESV 413 Query: 421 RYYYSQAIRDRLQQLFQ----------------KYITEHSGYGRYWKKNARHRDQKGPSQ 464 R +Y Q +RDRL Q + G G R+ S Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRSERRPFERGGRDRGGRQGGGFRQAGADRNAGPTTISD 473 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 RL +SSLV G+ P LRE+ L LT++NHP +L ++Y E++ I +D+ +LQ+ W+ + + Sbjct: 474 RLARSSLVSGQQ-AVPLLRESVLALTIVNHPQLLFDEYDEISTIEFDHRDLQRCWAAVLN 532 Query: 525 DFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + ++L GFG L+ LD+Q+R A LW+ATT A D R+GY QALA Sbjct: 533 AAATNGPRLTREGLVEQLETEGFGVLIGALDQQIRYARLWTATTAAAPEDAREGYLQALA 592 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 L+KR + L+ Q+ E+E+++A T +G+ E L+ L EV +++ ++E+QEA+IEGFG Sbjct: 593 LHKRTKALNWQRRELERELAYATEEGDIEAVPQLLRTLQEVQLEVTRLENQEAIIEGFGV 652 Query: 644 MSGRL 648 +SGR+ Sbjct: 653 LSGRV 657 >gi|110633817|ref|YP_674025.1| DNA primase [Mesorhizobium sp. BNC1] gi|110284801|gb|ABG62860.1| DNA primase [Chelativorans sp. BNC1] Length = 639 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 278/655 (42%), Positives = 392/655 (59%), Gaps = 26/655 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS ++G V +D+RK+N +GD+WACCPFH EK+PSFHC D KG Sbjct: 1 MRFPNSFLDEIRDRVPISQVVGSRVTFDKRKSNPGRGDFWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP+ EK+EK + L + Sbjct: 61 RYHCFGCGVSGDHFRFLTELDGMSFPEAVERVAEMAGVPMPARDPEAEKREKERASLTDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L+ AR YL RGI S + F+LG+APDSR +L+E L +G + Sbjct: 121 MEMAAQFFQDCLQGARGAEARAYLRGRGIASLTQQTFRLGFAPDSRNALKEFLAGRGVGK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E++ GL++ G + SYDRFR R++FPI +RG+VIAFGGR LS KYLNSP+T Sbjct: 181 EQMEACGLVVSGPDVPVSYDRFRGRVMFPIEDARGRVIAFGGRALSSDVPAKYLNSPDTE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A ++ +I VEGYMDV++L QA V+NVV+ LGT Sbjct: 241 LFHKGNVLYNHARARKAVKD-----------GPVIAVEGYMDVIALAQASVENVVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++S VLCFDGD GLRAA++A DL L + PG + F LL G+DPD Sbjct: 290 ALTENQLELLWRISGEPVLCFDGDGAGLRAAWRAADLALPLVQPGRSLRFALLPEGKDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ AF+ LI E+ PL D+LW RET R F+TP+ RAELE + N I+D+ + Sbjct: 350 DLVREEGRQAFDALIGETRPLADLLWMRETSGRVFDTPERRAELEQTFRELANRIRDENV 409 Query: 421 RYYYSQAIRDRLQQLF-------QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R +Y+Q +R+R+Q F ++ S G K + S+ L +S++VK Sbjct: 410 RRHYAQELRERVQSFFGSGPQPGRQQRGGFSPRGGGPGKPGAAAGRFAVSESLARSAMVK 469 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 P LREA L++ L+NHPA++ EQ+ + + N +L+KL+S L Sbjct: 470 RTAGMMP-LREATLIVALVNHPALIDEQFDAVEKLSLANADLKKLYSALLDAVAHDVARD 528 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E + + G GE+L++ VR A W A EA + D R+ + QAL L++ L R Sbjct: 529 HEALTAAIGAAGLGEILERAQTLVRRANQWPALPEAALEDAREAFLQALHLHRSAGALHR 588 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + E+ +A E T L E+ ++ ++S EA+IEGFG +SGR+ Sbjct: 589 ELKAAEQALA-------NEPTEENYRHLVEIQAELRNLQSAEALIEGFGILSGRV 636 >gi|222086545|ref|YP_002545079.1| DNA primase protein [Agrobacterium radiobacter K84] gi|221723993|gb|ACM27149.1| DNA primase protein [Agrobacterium radiobacter K84] Length = 664 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 305/665 (45%), Positives = 422/665 (63%), Gaps = 24/665 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PIS++IG+ V WDRRKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISDVIGRRVTWDRRKTNVPRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP K+EK +T L+ + Sbjct: 61 RYHCFGCGVTGDHFRFLTDLEGLSFPEAVQQIADMAGVPMPIADPMEAKREKERTSLLDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A R YL +RG+ I+ F+LGY+PDSR +L+E L K + Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIDTFRLGYSPDSRNALKEFLSSKDVVK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G + SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSSREKVIAFGGRAMSPDAPAKYLNSNETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A + S II VEGYMDV++L QAGV+N V+ LGT Sbjct: 241 LFHKGNVLYNFTRARRAA-------QGNDGSGTIIAVEGYMDVIALHQAGVENAVAPLGT 293 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++P+ +LCFDGD G+RAA +A DL L H+ PG V F LL G+DPD Sbjct: 294 ALTESQLELLWKMTPQPMLCFDGDGAGIRAANRAADLALPHIKPGRTVRFALLPDGKDPD 353 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F+K++ ++ PL +M+W RET N +F+TP+ RAELE LK ++ I D+ + Sbjct: 354 DLVRHDGRAPFDKVLAQAKPLAEMIWGRETSNGTFDTPEARAELEARLKQMVSVIADENV 413 Query: 421 RYYYSQAIRDRLQQLFQKYITE---------------HSGYGRYWKKNARHRDQKGPSQR 465 R +Y Q IRDRL LFQ S GR + R + Sbjct: 414 RRHYQQDIRDRLNGLFQPQFRRNDNQQGRGFSRENNGRSFGGRGGQSRDRPAAVSTKATD 473 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + S + P LRE+ L +T++NHP +LQ++Y E+A I Y++ ELQ+LWS + Sbjct: 474 RLMRSGMIKGHQDVPGLRESVLAVTIVNHPLLLQDEYDEIAAIDYESRELQRLWSAMLGA 533 Query: 526 FVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + ++L E+GF LLK LD+QVR+A LW+AT EA + D R+GY+QALA Sbjct: 534 AATIPAQQLSRERLLEQLEEQGFAALLKALDQQVRNARLWTATEEAAMEDAREGYRQALA 593 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 L+KR + L K E+E+ +A+ T +G+ E L+ L EV ++ ++E+QEA+I+GFG Sbjct: 594 LHKRSKALRWHKIELERAVAEATEEGDGELIEQLMRALQEVQLEALRLENQEAIIDGFGV 653 Query: 644 MSGRL 648 +SGR+ Sbjct: 654 LSGRI 658 >gi|17986813|ref|NP_539447.1| DNA primase [Brucella melitensis bv. 1 str. 16M] gi|17982446|gb|AAL51711.1| DNA primase [Brucella melitensis bv. 1 str. 16M] Length = 681 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 27 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 86 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 87 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 146 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 147 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 206 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 207 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 266 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 267 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 321 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 322 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 381 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 382 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 441 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 442 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 501 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 502 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 561 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 562 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 621 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 622 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 674 Query: 646 GR 647 GR Sbjct: 675 GR 676 >gi|27382461|ref|NP_773990.1| DNA primase [Bradyrhizobium japonicum USDA 110] gi|27355632|dbj|BAC52615.1| DNA primase [Bradyrhizobium japonicum USDA 110] Length = 666 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 238/683 (34%), Positives = 365/683 (53%), Gaps = 58/683 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L + +S ++G+ V + ++ PF EKTPSF+ ND KG Sbjct: 1 MRFTPQFLDELRARLSVSEVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS GD ++F+ G F E+V+RLA++AG+PLP V P ++E+ + L + Sbjct: 56 FYHDFSSGKHGDIITFVMETDGLPFAEAVERLASMAGLPLPAVTPDAARQEQRRRSLHDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A +F +L + + YL +R I F+LGYA R++L+EHL + G S Sbjct: 116 MDLAAKYFAETLASRVGAKARGYLADRAISPATQLQFRLGYASPDRFALKEHLGKLGVSV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLLI GD+ YDRFR+R++FPI RG+VIAFGGR L K KYLNSPET Sbjct: 176 DDMVETGLLIGGDDIPVPYDRFRDRVMFPITDLRGRVIAFGGRALEKDVPAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + S +I+VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGDNLYNHQTARKA----------THDGSTLIVVEGYVDVIAMVTAGFAGSVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++ +LCFDGD G +AAY+A DL L L PG + F LL G+DPD Sbjct: 286 ALTENQLALLWKMADEPILCFDGDRAGQKAAYRAADLALPFLSPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ A E++I + PL DMLW RE E +F TP+ RA LE +K I+D+ + Sbjct: 346 DLVRSGGRGAMEEVIAAARPLADMLWSRELEGGNFATPERRAALEARIKELAGGIRDEVV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------------------ 462 R YY Q + +RLQ+ F GR + + P Sbjct: 406 RRYYRQDLAERLQRTFAPESGRGGFAGRGNFRPGQGGRPFQPRSGGQANRFGGQGFRGAP 465 Query: 463 ------------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 + + +S + S REA +L LINHP +L E +E+A + + Sbjct: 466 GPTPLPSGPYQAASPQLATSPIMKGQRSVISRREALILQCLINHPWLLHEHLEEVAALEF 525 Query: 511 DNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + E KL + + + F + P E++ + + GF +LL++++ + A +W Sbjct: 526 AHPEAHKLRAGIIAAFANDHHHSPDPGELAEKMRADIEKGGFSQLLQRVENGITTAAVWG 585 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 A A DV + Q +AL++++ L R+ ++ E + + + + ++ L +V Sbjct: 586 AREGAARDDVLSTWHQLVALHRQWHSLLRELKDAELALGE-------DPSEANLAWLRDV 638 Query: 625 HIQIHQIESQEAMIEGFGKMSGR 647 +I +++ EA+IEGFG++SGR Sbjct: 639 KARIGEVDGTEALIEGFGELSGR 661 >gi|23502349|ref|NP_698476.1| DNA primase [Brucella suis 1330] gi|254704734|ref|ZP_05166562.1| DNA primase [Brucella suis bv. 3 str. 686] gi|261755431|ref|ZP_05999140.1| DNA primase [Brucella suis bv. 3 str. 686] gi|23348330|gb|AAN30391.1| DNA primase [Brucella suis 1330] gi|261745184|gb|EEY33110.1| DNA primase [Brucella suis bv. 3 str. 686] Length = 655 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGSRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|86358556|ref|YP_470448.1| DNA primase [Rhizobium etli CFN 42] gi|86282658|gb|ABC91721.1| DNA primase protein [Rhizobium etli CFN 42] Length = 665 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 311/660 (47%), Positives = 422/660 (63%), Gaps = 13/660 (1%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL +RG+ IE F+LGYAPDSR +L+E L KG S+ Sbjct: 121 MEMATSFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A +Q R D N+S II VEGYMDV++L QAG++N V+ LGT Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLGT 299 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L L HL PG V F LL G+DPD Sbjct: 300 ALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDPD 359 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F+K++ ++ PL +MLW RE F+TP+ RAELE LK + I D+ + Sbjct: 360 DLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIGDENV 419 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL--------- 471 R +Y Q IRDRL FQ + R + + ++ +S Sbjct: 420 RRHYQQDIRDRLNAFFQPQFQNRNSGERRGFSGSPRNGRDNAAKAGPKSPSLISDRLARS 479 Query: 472 -VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVE 528 +LRE+ L LT++NHPA++ + Y E+A I YD+ ELQ+LWS + + V Sbjct: 480 GPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRELQRLWSAMLGAAAAVA 539 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + E + +RL GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR Sbjct: 540 GPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRA 599 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + L RQK E+E++IA T G+ E LI EVH++ ++E+QEA+I+GFG +SGR+ Sbjct: 600 KALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGRV 659 >gi|148559018|ref|YP_001259365.1| DNA primase [Brucella ovis ATCC 25840] gi|148370275|gb|ABQ60254.1| DNA primase [Brucella ovis ATCC 25840] Length = 681 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 27 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 86 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 87 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 146 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 147 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 206 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 207 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 266 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 267 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 321 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 322 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 381 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 382 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 441 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 442 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 501 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 502 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 561 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 562 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 621 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 622 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 674 Query: 646 GR 647 GR Sbjct: 675 GR 676 >gi|306844487|ref|ZP_07477076.1| DNA primase [Brucella sp. BO1] gi|306275098|gb|EFM56854.1| DNA primase [Brucella sp. BO1] Length = 655 Score = 520 bits (1338), Expect = e-145, Method: Composition-based stats. Identities = 279/662 (42%), Positives = 403/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF H L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFEHQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD------------QKGPSQRLMQ 468 R +YSQ +R+R Q F + + G+ + R + + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGHVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|254719521|ref|ZP_05181332.1| DNA primase [Brucella sp. 83/13] gi|265984527|ref|ZP_06097262.1| DNA primase [Brucella sp. 83/13] gi|264663119|gb|EEZ33380.1| DNA primase [Brucella sp. 83/13] Length = 656 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 278/663 (41%), Positives = 402/663 (60%), Gaps = 28/663 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF + L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFENQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467 R +YSQ +R+R Q F + + G+ + R + S L Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGSGRLAISDSLA 475 Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 RSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLD 535 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L Sbjct: 536 VLAAGHVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHL 595 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 ++R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648 Query: 645 SGR 647 SGR Sbjct: 649 SGR 651 >gi|161619428|ref|YP_001593315.1| DNA primase [Brucella canis ATCC 23365] gi|260566018|ref|ZP_05836488.1| DNA primase [Brucella suis bv. 4 str. 40] gi|161336239|gb|ABX62544.1| DNA primase [Brucella canis ATCC 23365] gi|260155536|gb|EEW90616.1| DNA primase [Brucella suis bv. 4 str. 40] Length = 655 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGSRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLYKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|254714702|ref|ZP_05176513.1| DNA primase [Brucella ceti M644/93/1] gi|254717763|ref|ZP_05179574.1| DNA primase [Brucella ceti M13/05/1] gi|261219610|ref|ZP_05933891.1| DNA primase [Brucella ceti M13/05/1] gi|261322498|ref|ZP_05961695.1| DNA primase [Brucella ceti M644/93/1] gi|260924699|gb|EEX91267.1| DNA primase [Brucella ceti M13/05/1] gi|261295188|gb|EEX98684.1| DNA primase [Brucella ceti M644/93/1] Length = 655 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISNSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|163843734|ref|YP_001628138.1| DNA primase [Brucella suis ATCC 23445] gi|163674457|gb|ABY38568.1| DNA primase [Brucella suis ATCC 23445] Length = 655 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGATHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|225852962|ref|YP_002733195.1| DNA primase [Brucella melitensis ATCC 23457] gi|254689669|ref|ZP_05152923.1| DNA primase [Brucella abortus bv. 6 str. 870] gi|254694159|ref|ZP_05155987.1| DNA primase [Brucella abortus bv. 3 str. Tulya] gi|254702197|ref|ZP_05164025.1| DNA primase [Brucella suis bv. 5 str. 513] gi|254708149|ref|ZP_05169977.1| DNA primase [Brucella pinnipedialis M163/99/10] gi|254710519|ref|ZP_05172330.1| DNA primase [Brucella pinnipedialis B2/94] gi|256032012|ref|ZP_05445626.1| DNA primase [Brucella pinnipedialis M292/94/1] gi|256045104|ref|ZP_05448005.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1] gi|256114034|ref|ZP_05454811.1| DNA primase [Brucella melitensis bv. 3 str. Ether] gi|256160210|ref|ZP_05457904.1| DNA primase [Brucella ceti M490/95/1] gi|256255416|ref|ZP_05460952.1| DNA primase [Brucella ceti B1/94] gi|256257920|ref|ZP_05463456.1| DNA primase [Brucella abortus bv. 9 str. C68] gi|256263560|ref|ZP_05466092.1| DNA primase [Brucella melitensis bv. 2 str. 63/9] gi|260169149|ref|ZP_05755960.1| DNA primase [Brucella sp. F5/99] gi|260565294|ref|ZP_05835778.1| DNA primase [Brucella melitensis bv. 1 str. 16M] gi|260755201|ref|ZP_05867549.1| DNA primase [Brucella abortus bv. 6 str. 870] gi|260884216|ref|ZP_05895830.1| DNA primase [Brucella abortus bv. 9 str. C68] gi|261214464|ref|ZP_05928745.1| DNA primase [Brucella abortus bv. 3 str. Tulya] gi|261222620|ref|ZP_05936901.1| DNA primase [Brucella ceti B1/94] gi|261315655|ref|ZP_05954852.1| DNA primase [Brucella pinnipedialis M163/99/10] gi|261318092|ref|ZP_05957289.1| DNA primase [Brucella pinnipedialis B2/94] gi|261752771|ref|ZP_05996480.1| DNA primase [Brucella suis bv. 5 str. 513] gi|261758661|ref|ZP_06002370.1| DNA primase [Brucella sp. F5/99] gi|265989124|ref|ZP_06101681.1| DNA primase [Brucella pinnipedialis M292/94/1] gi|265991537|ref|ZP_06104094.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1] gi|265995375|ref|ZP_06107932.1| DNA primase [Brucella melitensis bv. 3 str. Ether] gi|265998585|ref|ZP_06111142.1| DNA primase [Brucella ceti M490/95/1] gi|225641327|gb|ACO01241.1| DNA primase [Brucella melitensis ATCC 23457] gi|260151362|gb|EEW86456.1| DNA primase [Brucella melitensis bv. 1 str. 16M] gi|260675309|gb|EEX62130.1| DNA primase [Brucella abortus bv. 6 str. 870] gi|260873744|gb|EEX80813.1| DNA primase [Brucella abortus bv. 9 str. C68] gi|260916071|gb|EEX82932.1| DNA primase [Brucella abortus bv. 3 str. Tulya] gi|260921204|gb|EEX87857.1| DNA primase [Brucella ceti B1/94] gi|261297315|gb|EEY00812.1| DNA primase [Brucella pinnipedialis B2/94] gi|261304681|gb|EEY08178.1| DNA primase [Brucella pinnipedialis M163/99/10] gi|261738645|gb|EEY26641.1| DNA primase [Brucella sp. F5/99] gi|261742524|gb|EEY30450.1| DNA primase [Brucella suis bv. 5 str. 513] gi|262553209|gb|EEZ09043.1| DNA primase [Brucella ceti M490/95/1] gi|262766488|gb|EEZ12277.1| DNA primase [Brucella melitensis bv. 3 str. Ether] gi|263002321|gb|EEZ14896.1| DNA primase [Brucella melitensis bv. 1 str. Rev.1] gi|263093588|gb|EEZ17613.1| DNA primase [Brucella melitensis bv. 2 str. 63/9] gi|264661321|gb|EEZ31582.1| DNA primase [Brucella pinnipedialis M292/94/1] gi|326409501|gb|ADZ66566.1| DNA primase [Brucella melitensis M28] gi|326539208|gb|ADZ87423.1| DNA primase [Brucella melitensis M5-90] Length = 655 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 278/662 (41%), Positives = 401/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|294852800|ref|ZP_06793473.1| DNA primase [Brucella sp. NVSL 07-0026] gi|294821389|gb|EFG38388.1| DNA primase [Brucella sp. NVSL 07-0026] Length = 691 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 37 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 97 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 156 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + + S L + Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTHRNEGARGRGGPAGSGRLAISDSLAR 511 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 512 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 571 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 572 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 631 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 632 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 684 Query: 646 GR 647 GR Sbjct: 685 GR 686 >gi|237815875|ref|ZP_04594872.1| DNA primase [Brucella abortus str. 2308 A] gi|237789173|gb|EEP63384.1| DNA primase [Brucella abortus str. 2308 A] Length = 691 Score = 518 bits (1334), Expect = e-144, Method: Composition-based stats. Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 37 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P P++EK+E + L + Sbjct: 97 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARAPEMEKREAQRATLYDV 156 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 511 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 512 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 571 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 572 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 631 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 632 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 684 Query: 646 GR 647 GR Sbjct: 685 GR 686 >gi|256369897|ref|YP_003107408.1| DNA primase [Brucella microti CCM 4915] gi|256000060|gb|ACU48459.1| DNA primase [Brucella microti CCM 4915] Length = 655 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+AT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATILAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|62290371|ref|YP_222164.1| DNA primase [Brucella abortus bv. 1 str. 9-941] gi|82700293|ref|YP_414867.1| DNA primase [Brucella melitensis biovar Abortus 2308] gi|189024599|ref|YP_001935367.1| DNA primase [Brucella abortus S19] gi|254697812|ref|ZP_05159640.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59] gi|254730701|ref|ZP_05189279.1| DNA primase [Brucella abortus bv. 4 str. 292] gi|260546910|ref|ZP_05822649.1| DNA primase [Brucella abortus NCTC 8038] gi|260758421|ref|ZP_05870769.1| DNA primase [Brucella abortus bv. 4 str. 292] gi|260762247|ref|ZP_05874590.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59] gi|62196503|gb|AAX74803.1| DnaG, DNA primase [Brucella abortus bv. 1 str. 9-941] gi|82616394|emb|CAJ11455.1| Mitochondrial substrate carrier:Zn-finger, CHC2 type:Toprim sub-domain:TOPRIM:DNA primase:Toprim, primase [Brucella melitensis biovar Abortus 2308] gi|189020171|gb|ACD72893.1| DNA primase [Brucella abortus S19] gi|260095960|gb|EEW79837.1| DNA primase [Brucella abortus NCTC 8038] gi|260668739|gb|EEX55679.1| DNA primase [Brucella abortus bv. 4 str. 292] gi|260672679|gb|EEX59500.1| DNA primase [Brucella abortus bv. 2 str. 86/8/59] Length = 655 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 277/662 (41%), Positives = 400/662 (60%), Gaps = 27/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P P++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARAPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------GPSQRLMQ 468 R +YSQ +R+R Q F + G+ + R + S L + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNEGARGRGGPAGSGRLAISDSLAR 475 Query: 469 SSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 STLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLDV 535 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L+ Sbjct: 536 LAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHLH 595 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG S Sbjct: 596 QRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLSS 648 Query: 646 GR 647 GR Sbjct: 649 GR 650 >gi|306843168|ref|ZP_07475786.1| DNA primase [Brucella sp. BO2] gi|306286646|gb|EFM58209.1| DNA primase [Brucella sp. BO2] Length = 656 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 278/663 (41%), Positives = 402/663 (60%), Gaps = 28/663 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDLWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF + L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFENQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467 R +YSQ +R+R Q F + + G+ + R + S L Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGYQNGGQRSQPFTRRNEGARGRGGPAGGSGRLAISDSLA 475 Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +S+LVKG LRE A++LTL+NHP +++E ++ LA + ++ L+ L + Sbjct: 476 RSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHDALKTLHLAMLD 535 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + L + G G+L+K L++ V+ A LW+ATT A D R+ +QAL L Sbjct: 536 VLAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATTLAAEDDAREALRQALHL 595 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 ++R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648 Query: 645 SGR 647 SGR Sbjct: 649 SGR 651 >gi|241205664|ref|YP_002976760.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859554|gb|ACS57221.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 669 Score = 515 bits (1326), Expect = e-143, Method: Composition-based stats. Identities = 312/665 (46%), Positives = 426/665 (64%), Gaps = 19/665 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ D+ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ + R YL +RG+ IE F+LGYAPDSR +L+E L KG S+ Sbjct: 121 MEMATQFFQDQLQTSNGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 DQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG LYNF A +Q R D + +++ II VEGYMDV++L QAG++N V+ LG Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNATGTIIAVEGYMDVIALHQAGIENAVAPLG 299 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL LLWK+ P+ +LCFDGD G+RAA +A +L L HL PG V F LL G+DP Sbjct: 300 TALTENQLELLWKMVPQPMLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G+ F+K++ ++ PL +MLW RE F+TP+ RAELE LK + I D+ Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADEN 419 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------------HRDQKGPSQR 465 +R +Y Q IRDRL FQ + R N + S+R Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGDRRGGFNGNGNYRTGRDNAGKAGPKSPSVISER 479 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-- 523 L +S V+G + +LRE L LT++NHP+++ + Y E+A I YD+ ELQ+LWS + Sbjct: 480 LARSGPVRGHQNN-TALRECVLALTVVNHPSLMIDDYDEIAAIEYDSRELQRLWSAMLGA 538 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + V + E + +RL GFG L+K LD+QVR+A LW AT EA + D R+GY+QALA Sbjct: 539 AAAVAGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWIATEEAAMEDAREGYRQALA 598 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 +KR + L RQK E+E++IA T G+ E L+ EVH + ++E+QEA+I+GFG Sbjct: 599 SHKRAKALRRQKIELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGV 658 Query: 644 MSGRL 648 +SGR+ Sbjct: 659 LSGRV 663 >gi|90418028|ref|ZP_01225940.1| putative DNA primase [Aurantimonas manganoxydans SI85-9A1] gi|90337700|gb|EAS51351.1| putative DNA primase [Aurantimonas manganoxydans SI85-9A1] Length = 654 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 255/666 (38%), Positives = 382/666 (57%), Gaps = 36/666 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ D+ IPIS++IG+ V WDRRK+ +GD+WACCPFH EKTPSFHC D+KG Sbjct: 1 MRFSPAFLDDIRDRIPISDVIGRRVTWDRRKSQPGRGDHWACCPFHGEKTPSFHCEDAKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+RLAA AGVP+P D + E++E + ++ Sbjct: 61 RYHCFGCGVSGDHFRFLTELEGLSFPEAVERLAAEAGVPMPARDAQAEQREAAKATIVDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A+ FF L+ + YL +RG+ H + F LGYAP+SR L+E+L KG Sbjct: 121 MRHASSFFQAMLQEPEGAKARAYLRDRGLTPHTQKKFGLGYAPNSRNRLKEYLASKGVGR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +I AGL++ G+ A SYDRFR+R++FPI + IAFGGR +S KYLNSPET Sbjct: 181 SEIEAAGLVVHGEGIAVSYDRFRDRIMFPIVDLHDKPIAFGGRAMSAEAQAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+ LYN A + ++ +++VEGYMDV++L QAG +NVV+ LGT Sbjct: 241 IFHKGQVLYNLGQARRAAK----------AAGTLVVVEGYMDVIALAQAGFENVVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD GL+AA+++ +L L L PG + F L+ G+DPD Sbjct: 291 ALTERQLDLLWRSTGEPILCFDGDSAGLKAAHRSAELALPALKPGRSLRFALMPPGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G AF ++ + PL D+LW RET F+TP+ RA+LE +K + + D+ + Sbjct: 351 DLVREGGPDAFREIQGAARPLADLLWMRETAGGDFDTPERRADLEHRVKALLRQVGDESV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-------------------KG 461 R +Y Q + +RL+ F R ++ R + Sbjct: 411 RRHYLQDVEERLRSFFGGSAKTAGYGNRRDGRDNRGGGRDRDDHGGGPRRGGAAGGRRSA 470 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 S RL +SSL++ + +PSLRE A++L +NHPA++ E++ AD+ +L +L S Sbjct: 471 ISDRLARSSLMRPQQGPQPSLREIAIVLGFVNHPALIHEEFDYFADLDLPTGDLDRLRSC 530 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + E + + L RG ++ + + + R LW ++A D R+ +QA Sbjct: 531 VLDAYAESPPADRDALLAELQARGARDIFESYENKARMVRLWPFLSDAAPEDAREAVRQA 590 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 L L+ R R L+ + + E+ + + E + + L EV ++ +++ EA+IEGF Sbjct: 591 LHLHHRSRALASELKLAEEALGR-------ESSEAAFAHLMEVKRELERVDGTEALIEGF 643 Query: 642 GKMSGR 647 G +SGR Sbjct: 644 GTLSGR 649 >gi|15966071|ref|NP_386424.1| DNA primase [Sinorhizobium meliloti 1021] gi|307305626|ref|ZP_07585373.1| DNA primase [Sinorhizobium meliloti BL225C] gi|307317629|ref|ZP_07597068.1| DNA primase [Sinorhizobium meliloti AK83] gi|15075341|emb|CAC46897.1| Probable DNA primase [Sinorhizobium meliloti 1021] gi|306896787|gb|EFN27534.1| DNA primase [Sinorhizobium meliloti AK83] gi|306902329|gb|EFN32925.1| DNA primase [Sinorhizobium meliloti BL225C] Length = 667 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 290/668 (43%), Positives = 413/668 (61%), Gaps = 27/668 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PIS++IG+ V WDRRKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSPSFLDEIRDRVPISDVIGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P DP+ E++E+ +T L+ + Sbjct: 61 RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADLAGVPMPQPDPQAEQRERERTSLLDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL ERG+ IE F+LG+APDSR +L+E L KG + Sbjct: 121 MELATQFFQDQLQTANGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKGIGK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ GD SYDRFR+R++FPI S+R +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVVHGDGIPVSYDRFRDRIMFPIPSAREKVIAFGGRAMSPDAPAKYLNSNETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+NF A R + + II VEGYMDV++L QAG++N V+ LGT Sbjct: 241 LFHKGNVLFNFARAR-------RASQGADGAGTIIAVEGYMDVIALHQAGIENAVAPLGT 293 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++ + VLCFDGD G+RAA++A+DL L HL PG V F LL G+DPD Sbjct: 294 ALTENQLDLLWKMTTQPVLCFDGDGAGVRAAHRAVDLALPHLKPGRSVRFALLPEGKDPD 353 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F+K++ + L DM+W+RE + F+TP++RAELE L+ + I D+ + Sbjct: 354 DVVRHDGREPFDKVLANARSLADMVWQREVQGGDFDTPEKRAELEARLRQVTSVIADESV 413 Query: 421 RYYYSQAIRDRLQQLF--------QKYITEHSGYGRYWKKNARHRDQKGP---------- 462 R +Y Q +RDRL ++ E G + P Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRGERRPFERGGRQAGRQGGRGWSPAPNPVMGAAVEAGT 473 Query: 463 -SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + L G + P LRE+ L LT++NHP +L ++Y E+A I +D+ +LQ+ W+ Sbjct: 474 AGSSKLNQMLKAGGSLRPPVLRESVLALTIVNHPQLLFDEYDEIATIEFDHRDLQRCWAA 533 Query: 522 LFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + E + ++L GF L+ LD+QVR A LW+AT A D R+GY Q Sbjct: 534 VLNAAAANGLRLTRETLMEQLEAEGFSALIGALDQQVRYARLWTATAAAAPEDAREGYLQ 593 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 AL L++R + L QK E+E++IA+ TA + E+ L+ + EV +++H+++ EA+IEG Sbjct: 594 ALTLHRRTKALLWQKRELEREIAEATASEDVEQGQRLVRAMEEVQLELHRMDKLEAIIEG 653 Query: 641 FGKMSGRL 648 FG +SGR+ Sbjct: 654 FGVLSGRV 661 >gi|325293529|ref|YP_004279393.1| DNA primase [Agrobacterium sp. H13-3] gi|325061382|gb|ADY65073.1| DNA primase [Agrobacterium sp. H13-3] Length = 661 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 305/667 (45%), Positives = 433/667 (64%), Gaps = 33/667 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ + IS++IG+ V WD++KTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNTPRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AG+ +P DP+ EK+E+ +T L + Sbjct: 61 RYHCFGCGVSGDHFRFLTDLEGLSFPEAVQQIADMAGISMPQPDPQAEKRERERTSLQDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A R YL +RG+ IE F+LG+APDSR +L+EHL KG + Sbjct: 121 MEMATLFFQDQLQTALGARARAYLRDRGLTGRTIETFRLGFAPDSRNALKEHLASKGVAR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E++ GL++ +N SYDRFR+R++FPI SSR +VIAFGGR ++ KYLNS ET Sbjct: 181 EQMEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMAADAVAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A + S +I VEGYMDV++L QAGV+N V+ LGT Sbjct: 240 LFHKGNVLYNFARARRA---------SQASGGTVIAVEGYMDVIALYQAGVENAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK+SP+ +LCFDGD G+RAA +A DL L H+ P V+F LL G+DPD Sbjct: 291 ALTESQLDLLWKMSPQPILCFDGDGAGIRAANRAADLALPHIKPDRSVSFALLPDGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F++++ E+ PL M+W RET + +F+TP++RA+LE L+ + I D+ + Sbjct: 351 DLVRLEGRAPFDRVLSEAKPLAAMIWSRETSSVTFDTPEKRAQLESRLRQIVAVIGDEAV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE------------HSGYGRYWKKNARHR------DQKGP 462 R +Y Q +RDRL FQ + G GR +++NA R Sbjct: 411 RRFYQQDMRDRLNAFFQPRFQQGGSQGGNFRRDGQQGNGRGFQRNASGRGGAMAAPASNI 470 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S RL QS LV+G +K PSLRE+ L +T++NHP +L E+Y E+A I Y+N +LQ+LWS + Sbjct: 471 SDRLTQSGLVRGHQTK-PSLRESVLAITIVNHPELLLEEYDEIAAIDYENRDLQRLWSTV 529 Query: 523 FSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + E + +RL ++GF LLK +D+QVR+A LW+AT +A + D R+GY QA Sbjct: 530 LTFAAESAAEISRAGLIERLSQQGFEVLLKTMDQQVRNARLWTATEQAALEDAREGYVQA 589 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 L+L+KR + L QK E+E++I + T + E+ +L+ L EV ++I ++E+QEA+I+GF Sbjct: 590 LSLHKRTKSLLWQKRELEREIGEAT---DDERGTLLVRALAEVQLEIGRMENQEAIIDGF 646 Query: 642 GKMSGRL 648 G MSGR+ Sbjct: 647 GVMSGRV 653 >gi|15889447|ref|NP_355128.1| DNA primase [Agrobacterium tumefaciens str. C58] gi|15157311|gb|AAK87913.1| DNA primase [Agrobacterium tumefaciens str. C58] Length = 661 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 305/667 (45%), Positives = 434/667 (65%), Gaps = 33/667 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ + IS++IG+ V WD++KTNA +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNSFLDEIRDRVNISDVIGRRVSWDKKKTNAPRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AG+ +P DP+ EK+E+ +T L + Sbjct: 61 RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADMAGISMPQPDPQAEKRERERTSLQDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ + R YL +RG+ IE F+LGYAPDSR +L+EHL KG S+ Sbjct: 121 MEMATLFFQDQLQTSLGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEHLASKGVSK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E++ GL++ +N SYDRFR+R++FPI SSR +VIAFGGR ++ KYLNS ET Sbjct: 181 EQMEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMAADAVAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF + + + + +I VEGYMDV++L QAGV+N V+ LGT Sbjct: 240 LFHKGNVLYNF---------ARARRASQAAGGTVIAVEGYMDVIALYQAGVENAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ QL LLWK+SP+ VLCFDGD G+RAA +A DL L H+ P V+F LL G+DPD Sbjct: 291 ALTDSQLDLLWKMSPQPVLCFDGDGAGIRAANRAADLALPHIKPDRSVSFALLPDGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F++++ E+ PL M+W RET +F+TP++RA+LE L+ + I D+ + Sbjct: 351 DLVRLEGRAPFDRVLSEAKPLAAMIWSRETSGVTFDTPEKRAQLESRLRQIVTVIADETV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE------------HSGYGRYWKKNARHR------DQKGP 462 R +Y Q +RDRL FQ + G GR +++NA R Sbjct: 411 RRFYQQDMRDRLNGFFQPRFQQGGSQGGNFRRDGGQGAGRGFQRNAPGRGGAMSAPASSI 470 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S RL QS LV+G +K PSLRE+ L +T++NHP +L E+Y E+A I Y+N +LQ+LWS + Sbjct: 471 SDRLTQSGLVRGHQTK-PSLRESVLAITIVNHPELLLEEYDEIAAIDYENRDLQRLWSTV 529 Query: 523 FSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + E + RL + GF LLK +D+QVR+A LW+AT +A + D R+GY QA Sbjct: 530 LTYAAESAADISRAGLIDRLSQHGFEPLLKTMDQQVRNARLWTATEQAAMEDAREGYVQA 589 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 L+L+KR + L QK E+E++IA+ T + E+ +L+ + EV ++I ++E+QEA+I+GF Sbjct: 590 LSLHKRTKSLLWQKRELEREIAEAT---DDERGTLLVRAIAEVQLEIGRMENQEAIIDGF 646 Query: 642 GKMSGRL 648 G MSGR+ Sbjct: 647 GVMSGRV 653 >gi|116253150|ref|YP_768988.1| DNA primase [Rhizobium leguminosarum bv. viciae 3841] gi|115257798|emb|CAK08896.1| putative DNA primase [Rhizobium leguminosarum bv. viciae 3841] Length = 669 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 314/665 (47%), Positives = 426/665 (64%), Gaps = 19/665 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ D+ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A R YL +RG+ IE F+LG+APDSR +L+E L KG + Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGFAPDSRNALKEFLAGKGVLK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG LYNF A +Q R D + +++ II VEGYMDV++L QAG++N V+ LG Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNATGTIIAVEGYMDVIALYQAGIENAVAPLG 299 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L L HL PG V F LL G+DP Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G+ F+K++ ++ PL +MLW RE N F+TP+ RAELE LK + I D+ Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNNGKFDTPEARAELEARLKQLVAVIADEN 419 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------------HRDQKGPSQR 465 +R +Y Q IRDRL FQ + R N + S+R Sbjct: 420 VRRHYQQDIRDRLNIFFQPQFQNRNNGDRRGGFNGNGNYRTGRDNAGKAGPKSPSVISER 479 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF-- 523 L +S V+G + +LRE L LT++NHP+++ + Y E+A I YD+ ELQ+LWS + Sbjct: 480 LARSGPVRGHQNN-TALRECVLALTVVNHPSLMIDDYDEIAAIEYDSRELQRLWSAMLGA 538 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + V + E + +RL GFG L+K LD+QVR+A LW AT EA + D R+GY+QALA Sbjct: 539 AAAVAGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWIATEEAAMEDAREGYRQALA 598 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 +KR + L RQK E+E++IA T G+ E L+ EVH + ++E+QEA+I+GFG Sbjct: 599 SHKRAKALRRQKIELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGV 658 Query: 644 MSGRL 648 +SGR+ Sbjct: 659 LSGRV 663 >gi|90422489|ref|YP_530859.1| DNA primase [Rhodopseudomonas palustris BisB18] gi|90104503|gb|ABD86540.1| DNA primase [Rhodopseudomonas palustris BisB18] Length = 680 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 234/697 (33%), Positives = 362/697 (51%), Gaps = 72/697 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L +P+S ++G+ V + ++ PF EK+PSF ND KG Sbjct: 1 MRFTPQFLDELRARLPVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKSPSFTVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS GD +SF+ GC F E+V+RLA +AGVPLP V P ++E+ + L + Sbjct: 56 FYHDFSSGKHGDIISFVMETDGCGFTEAVERLAQMAGVPLPAVTPDAARQEQRRKSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A FF +L + R YL +R + F++GYAP R++L+EHL + G Sbjct: 116 MDLAAKFFADTLAARQGARARGYLADRAMSPATQLKFRIGYAPGERFALKEHLGKLGIPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++EAGLLI G++ +DRFR+R++FPI RG+VIAFGGR L K KYLNSPET Sbjct: 176 EDMVEAGLLISGEDIPVPFDRFRDRVMFPIADVRGRVIAFGGRALEKDVPAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + +I+VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGDNLYNLAVARAAAH----------DGAPLIVVEGYVDVIAMVGAGYAATVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLWK++ +LCFDGD G +AA++A D+ L HL PG + F LL G+DPD Sbjct: 286 ALTENQLQLLWKMADEPILCFDGDKAGQKAAWRAADMALPHLAPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A +++I + L D+LW RE ++ SF TP+ RA LE + N I+D+ L Sbjct: 346 DLARSGGRAAIDEVIGSARGLADVLWTREIQSGSFATPERRAALEARINELTNGIRDEVL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEH----------------------------------SGY 446 R YY Q + +RL+ F Sbjct: 406 RRYYRQDMAERLRSAFAPQGGFGGRGGYGRGGPRGGGGGGFGGESGRGFPQRSAFTPGAA 465 Query: 447 GRYWKKNAR----------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 GR + R +R + + SS + S REA +LLTL+NHP Sbjct: 466 GRMQPRGGRGAVSAGSQTINRMPYQVASPDLASSPIMRGQRSAISRREALILLTLLNHPW 525 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL------PEEIHQRLCERGFGELL 550 +L ++ +E+A + + E +L + + + F + ++ L G E L Sbjct: 526 LLHDRLEEVAALELAHPEAHRLRAGIIAAFANDYHHTGSPGEPSAKLRADLAAAGLSEQL 585 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++++R + +W+A +A DV + Q +AL++++ L R+ ++ E + Sbjct: 586 QRVERAITTNDVWAAGPDAAPEDVLSTWHQLVALHRQWHSLLRELKDAELALGD------ 639 Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 +++ L +V ++ +++ EA+IEGFG+ SGR Sbjct: 640 -QQSEANFGWLRDVKARLAEVDGTEALIEGFGESSGR 675 >gi|190892704|ref|YP_001979246.1| DNA primase [Rhizobium etli CIAT 652] gi|190697983|gb|ACE92068.1| DNA primase protein [Rhizobium etli CIAT 652] Length = 666 Score = 510 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 310/661 (46%), Positives = 421/661 (63%), Gaps = 14/661 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL +RG+ IE F+LGYAPDSR +L+E L KG S+ Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG LYNF A +Q R D + +++ II VEGYMDV++L QAGV+N V+ LG Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDQQDDNASGTIIAVEGYMDVIALHQAGVENAVAPLG 299 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L L HL PG V F LL G+DP Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G+ F+K++ ++ PL +MLW RE F+TP+ RAELE LK + I D+ Sbjct: 360 DDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIADEN 419 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471 +R +Y Q IRDRL FQ + R + P + +S Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNSERRGFGGNSRNGRDNPGKAGPKSPSLISDRLAR 479 Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527 +LRE+ L LT++NHPA++ + Y E+A I YD+ +LQ+LWS + V Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRKLQRLWSAVLGAAAAV 539 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + E + +RL GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR Sbjct: 540 AGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + L RQK E+E++IA T G+ E LI EVH++ ++E+QEA+I+GFG +SGR Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGR 659 Query: 648 L 648 + Sbjct: 660 V 660 >gi|327192723|gb|EGE59660.1| DNA primase protein [Rhizobium etli CNPAF512] Length = 666 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 308/661 (46%), Positives = 420/661 (63%), Gaps = 14/661 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AG+P+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGIPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL +RG+ IE F+LGYAPDSR +L+E L KG S+ Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSADAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG LYNF A +Q R D + +++ II VEGYMDV++L QAGV+N V+ LG Sbjct: 240 LFHKGNVLYNFARARRAIQGPGRGDPQDDNASGTIIAVEGYMDVIALHQAGVENAVAPLG 299 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L L HL PG V F LL G+DP Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGYSVRFALLPDGKDP 359 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G+ F+K++ ++ PL +MLW RE F+TP+ RAELE LK + I D+ Sbjct: 360 DDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDTPEARAELEARLKQLVAVIADEN 419 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471 +R +Y Q IRDRL FQ + R + + +S Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRNGRDNAGKAGPKSPSLISDRLAR 479 Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527 +LRE+ L LT++NHPA++ + Y E+A I YD+ ELQ+LWS + V Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPALMIDDYDEIAAIEYDSRELQRLWSAVLGAAAAV 539 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + +RL GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR Sbjct: 540 AGPHLTRDYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + L RQK E+E++IA T G+ E LI EVH++ ++E+QEA+I+GFG +SGR Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGR 659 Query: 648 L 648 + Sbjct: 660 V 660 >gi|146338437|ref|YP_001203485.1| DNA primase [Bradyrhizobium sp. ORS278] gi|146191243|emb|CAL75248.1| DNA primase [Bradyrhizobium sp. ORS278] Length = 668 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 232/683 (33%), Positives = 358/683 (52%), Gaps = 59/683 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +F+ +L +P+S+++G+ V + ++ PF EKTPSF+ ND KGF Sbjct: 3 RFTPEFLDELRARLPVSDVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+ FS G+ F+ GCSF E+V+RLA +AG+ LPV P ++ + + L ++ Sbjct: 58 YHDFSSGKHGNIFDFIMETEGCSFPEAVERLAGLAGLALPVATPDAAREARQRKTLYDVM 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E+A FF +L + R YL +R I F+LGYAP R++L+EHL +G Sbjct: 118 ELAAKFFADTLASRHGARARGYLADRAILPQTQLQFRLGYAPPDRFALKEHLGAQGVPVN 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++EAGLLI G++ YDRF++R++FPI RG+VIAFGGR + K KYLNSPET L Sbjct: 178 DMVEAGLLIGGEDIPVPYDRFKDRVMFPITDLRGRVIAFGGRAMQKDVPAKYLNSPETPL 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG NLYN A + + +I+VEGY+DV++L AG V+ LGTA Sbjct: 238 FHKGDNLYNLASARQAAH----------NGAPMIVVEGYVDVIALVAAGFAGAVAPLGTA 287 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE QL L+WK+ +LCFDGD G +AA++A D+ L L PG + F LL G+DPD Sbjct: 288 LTESQLSLIWKMVDEPILCFDGDRAGQKAAHRAADIALPLLKPGKSLRFALLPEGQDPDD 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G+ A E+++ + PL +++W RE E SFNTP+ RA LE + I D+ +R Sbjct: 348 LVRSGGRGAVEEVLKIAKPLAEVIWSREIEGGSFNTPERRAALEARIGQLTGAIADEVVR 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-------------------------- 455 YY Q + +RL Q F G + R Sbjct: 408 RYYKQDLSNRLYQAFAPDGGRRFSRGFGAESGRRIAPRGPGSGQQGRLSTGGGRRGGPPS 467 Query: 456 -----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 R + + S + S REA +L LINHP +L + +E+A + Sbjct: 468 TGPAMARGPYMAASPQLAMSPIMRGQRSAISRREALILQCLINHPWLLHDHLEEIAALEL 527 Query: 511 DNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + E KL + + + F + P E++ L + GF ELL++++R + +W+ Sbjct: 528 AHPEAHKLRAAIIAAFAHDHHHSPDPNEQAEKMRADLEKGGFSELLQRVERAITTPAVWA 587 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 A A DV + Q +AL++++ L R+ ++ E + + ++ + L +V Sbjct: 588 AKPGAARDDVLATWHQLVALHRQWHSLLRELKDAELALGEDPSEPN-------MGWLRDV 640 Query: 625 HIQIHQIESQEAMIEGFGKMSGR 647 ++ +++ EA+IEGFG++SGR Sbjct: 641 KARMAEMDGTEALIEGFGELSGR 663 >gi|158425266|ref|YP_001526558.1| DNA primase [Azorhizobium caulinodans ORS 571] gi|158332155|dbj|BAF89640.1| DNA primase [Azorhizobium caulinodans ORS 571] Length = 643 Score = 509 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 235/661 (35%), Positives = 355/661 (53%), Gaps = 38/661 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +P+S ++G+ V ++ ++ PF+ EKTPSF ND KG Sbjct: 1 MRFPPSFLDEIRTRLPVSEVVGRRVKLKKQGR-----EFAGLSPFNAEKTPSFFVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL G F E+V+RLA++AG+PLP V P+ KE + L + Sbjct: 56 FYHCFSSGKHGDVFDFLMETEGLPFGEAVERLASMAGLPLPDVTPEAAAKEARRRTLHEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L+ + YL +RG+ + F+LGYAP R++L+E L + G Sbjct: 116 MEMAAAFFEAELQARAGAKARGYLSDRGLGPSTQKRFRLGYAPGDRFALKEALGKAGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++E GLLI GD+ YDRFR+R++FPI +G+V+AFGGR L K KYLNSPET Sbjct: 176 SDMVETGLLIAGDDIPVPYDRFRDRVMFPITDLKGRVVAFGGRALEKDVPAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN + A +QK + +I VEGY+DV++L +AG + V+ LGT Sbjct: 236 LFHKGSLLYNAYSARAAVQK----------GAPVIAVEGYVDVIALVEAGFEGAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLW+++ VL FDGD G RAA++A+ L L H+ PG ++F L G+DPD Sbjct: 286 ALTEEQLQLLWRMADEPVLLFDGDKAGRRAAFRAVGLALPHIKPGKSLSFGALPDGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G+ A E ++ ++ PL MLW RETE + TP+ RA LE + + I+D+ + Sbjct: 346 DLIRASGREAMEGVLAQAQPLSAMLWARETEGSNLETPERRAALEARIGEAVAAIQDENV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITE--------------HSGYGRYWKKNARHRDQKGPSQRL 466 R +Y Q ++DRL++L SG R P L Sbjct: 406 RRHYKQDLQDRLRRLLSPGSENRPRRFEGGWSAAPGRSGNFRPQNGRFMREPPLVPGTEL 465 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 +S++V+G L+ P EA LL LINHP ++ E +E+A + + N + +L L Sbjct: 466 ARSAVVRGPLASLPRN-EALLLFCLINHPWLMDEYAEEVAGLPFANKDADRLRRALLEAH 524 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 +E + E + + L L +++ W A + D R + Q AL++ Sbjct: 525 LEGAH-EGEALTEHLTREDLDALAQRVRAFANPKMDWPAYPDTAPEDARLWWLQRAALHQ 583 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 + LS++ E E+ + ++ + + L +V ++ E EA++EGFG SG Sbjct: 584 KAYALSKELREAERSLG-------SDPSEANFAWLRDVRERLSAAEGTEALVEGFGASSG 636 Query: 647 R 647 R Sbjct: 637 R 637 >gi|222149283|ref|YP_002550240.1| DNA primase [Agrobacterium vitis S4] gi|221736267|gb|ACM37230.1| DNA primase [Agrobacterium vitis S4] Length = 678 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 301/677 (44%), Positives = 428/677 (63%), Gaps = 37/677 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + DF+ ++ +PIS +IG V WDR+KTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNDFLDEIRDRVPISAVIGARVPWDRKKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G +F E+V+R+A +AG+ +P VD + ++E+ +T L + Sbjct: 61 RYHCFGCGVSGDHFRFLTDLEGLNFPEAVERIADMAGIAMPKVDARDIERERERTSLQDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A+ + YL ERG+ IE F+LGYAP+SR +L+EHL KG + Sbjct: 121 MEMATLFFQDQLQAAQGAKARAYLRERGLSGRTIETFRLGYAPESRNALKEHLAGKGVPK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G + SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSSRDKVIAFGGRAMSPDAPAKYLNSNETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN+ A R + + II VEGYMDV++L QAGV+N V+ LGT Sbjct: 241 LFHKGNVLYNYSRAR-------RTLQGADGAETIIAVEGYMDVIALYQAGVENAVAPLGT 293 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL L+WK++P+ VLCFDGD G RAA++A+DL L HL PG V F +L G+DPD Sbjct: 294 ALTENQLELMWKMTPQPVLCFDGDGAGQRAAFRAVDLALPHLKPGKSVRFAMLPDGKDPD 353 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G+ F++++ E+ L +M+W RET F+TP++RAELE LK +N I D+ + Sbjct: 354 DLVKQDGRAPFDRVLAEARSLDEMVWLRETGQGRFDTPEQRAELEARLKQIVNIIADENV 413 Query: 421 RYYYSQAIRDRLQQLFQKYITE----------------------------HSGYGRYWKK 452 R +Y Q +RDRL FQ + G Sbjct: 414 RRHYQQNVRDRLYGFFQGRGQGQGAGRAGRGNFERGGGGFTGNRPGNGRFQNNAGGRGAP 473 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 + S RL +S +V + +PSLRE+ L LT++NHP +LQE Y E++ I +D+ Sbjct: 474 AGQRPGSTMASDRLTRSGMV-SRSHDQPSLRESVLALTIVNHPQLLQEDYDEISCIDFDS 532 Query: 513 NELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 +LQ+LW + + + E++++RL GF LLK LD+Q+R+A LW+ATT A + Sbjct: 533 RDLQRLWPAVLTAVAQTGAQLTREDLYERLMSGGFDALLKALDQQIRNARLWTATTVAAL 592 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 D R+GY QAL+L+KR + L RQ+ E+E++IA+ T +A + L+S+L EV ++I ++ Sbjct: 593 EDAREGYTQALSLHKRAKALRRQRIELEREIAEATEADDAGRIDGLMSVLQEVQLEIVRM 652 Query: 632 ESQEAMIEGFGKMSGRL 648 E+QEA+I+GFG MSGR+ Sbjct: 653 ENQEAIIDGFGVMSGRV 669 >gi|150397427|ref|YP_001327894.1| DNA primase [Sinorhizobium medicae WSM419] gi|150028942|gb|ABR61059.1| DNA primase [Sinorhizobium medicae WSM419] Length = 671 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 284/672 (42%), Positives = 416/672 (61%), Gaps = 31/672 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PIS+++G+ V WDRRKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSPSFLDEIRDRVPISDVVGKRVTWDRRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGV +P DP+ E++E+ +T L+ + Sbjct: 61 RYHCFGCGVSGDHFRFLTELEGLSFPEAVQQIADMAGVAMPQPDPQAEQRERERTSLLDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L++A + YL ERG+ IE F+LG+APDSR +L+E L KG + Sbjct: 121 MELATHFFQDQLQSATGAKARAYLRERGLTGRTIETFRLGFAPDSRNALKEFLAGKGIGK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G + SYDRFR+R++FPI S+R +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVVHGPDIPVSYDRFRDRIMFPILSAREKVIAFGGRAMSPDAPAKYLNSNETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+NF A R + + II VEGYMDV++L QAG++N V+ LGT Sbjct: 241 LFHKGNVLFNFTRAR-------RASQGADGAGTIIAVEGYMDVIALHQAGIENAVAPLGT 293 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWKL+ + VLCFDGD G+RAA++A+DL L HL PG V F +L G+DPD Sbjct: 294 ALTENQLDLLWKLTAQPVLCFDGDGAGIRAAHRAVDLALPHLKPGRSVRFAMLPEGKDPD 353 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ F++++ + L DM+W RE + F+TP++RAELE L+ I D+ + Sbjct: 354 DVVRQDGREPFDRVLANARSLADMVWLREVQGGDFDTPEKRAELEGRLRQVSAVIADESV 413 Query: 421 RYYYSQAIRDRLQQLFQ---KYITEHSGYGRYWKKNARHR-------------------- 457 R +Y Q +RDRL Q + E + R ++ Sbjct: 414 RRHYGQDMRDRLNAFLQGSAPFRGERRPFDRGGRQGGGQAGRQGGRGWSRAANPVLGAAV 473 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + + + G + P LRE+ L LT++NHP +L ++Y E+A I +D+ +LQ+ Sbjct: 474 EAGTAGSSKLNQMMKAGGSLRPPVLRESVLALTIVNHPQLLFDEYDEIATIEFDHRDLQR 533 Query: 518 LWSFLFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 W+ + + E + ++L GF +L+ LD+Q+R+A LW+AT A D R+ Sbjct: 534 CWAAVLNAAAANGLRLTRETLLEQLEAEGFSQLIGALDQQIRNARLWTATEAAAPEDARE 593 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 GY QAL L++R + L QK E+E++IA+ TA +A++ L+ + EV +++H+++ EA Sbjct: 594 GYLQALTLHRRTKALLWQKRELEREIAEATASEDADQGQRLVRAMEEVQLELHRMDKLEA 653 Query: 637 MIEGFGKMSGRL 648 +IEGFG +SGR+ Sbjct: 654 IIEGFGVLSGRV 665 >gi|148257987|ref|YP_001242572.1| DNA primase [Bradyrhizobium sp. BTAi1] gi|146410160|gb|ABQ38666.1| DNA primase [Bradyrhizobium sp. BTAi1] Length = 671 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 239/686 (34%), Positives = 360/686 (52%), Gaps = 62/686 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + F+ +L +P+S+++G+ V + ++ PF EKTPSF+ ND KGF Sbjct: 3 RFTPQFLDELRARLPVSDVVGKRVKLKKAGR-----EWKGLSPFQQEKTPSFYVNDQKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+ FS G+ F+ GCSF E+V+RLA++AG+PLP V P ++E+ + L ++ Sbjct: 58 YHDFSSGKHGNIFDFVMETEGCSFPEAVERLASLAGLPLPAVTPDAARQERQRKTLYDVM 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E+A FF +L + R YL +R I F+LGYAP R+ L+E L +G Sbjct: 118 ELAAKFFTDTLASRHGARARGYLADRAILPQTQLQFRLGYAPPDRFGLKEFLGAQGVPVN 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++EAGLL+ GD+ YDRFR+R++FPI RG+VIAFGGR L K KYLNSPET L Sbjct: 178 DMVEAGLLVGGDDIPVPYDRFRDRVMFPIADLRGRVIAFGGRALQKDVPAKYLNSPETPL 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG NLYN A + + +I+VEGY+DV++L AG V+ LGTA Sbjct: 238 FHKGDNLYNLQSARQAAH----------NGAPMIVVEGYVDVIALVAAGFAGAVAPLGTA 287 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE QL L+WK+ +LCFDGD G +AAY+A DL L HL PG + F LL G+DPD Sbjct: 288 LTESQLALIWKMVDEPILCFDGDRAGQKAAYRAADLALPHLQPGKSLRFALLPEGQDPDD 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G+ A E+++ + PL +++W RE E SF TP+ RA LE + N I+D+ +R Sbjct: 348 LVRTGGRGAVEEVLAVAKPLAEVIWSREIEGGSFTTPERRAALEARIGELTNSIRDEVVR 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-------------------------- 455 YY Q + +RL + F G G + R Sbjct: 408 RYYKQDLTERLYRAFAPEGGRGFGRGYGAESGRRFGVRSPGSGQPGRLSTGGGGKGRRGG 467 Query: 456 --------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 R + + S + S REA +L LINHP +L + +E+A Sbjct: 468 APSTGPAMARGPYMAASPQLAMSPIMRGQRSAISRREALILQCLINHPWLLHDHLEEVAA 527 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLP------EEIHQRLCERGFGELLKQLDRQVRDAG 561 + + E KL + + + F + P E++ L GF ELL++++R + A Sbjct: 528 LELAHPEAHKLRAAIIAAFAHDHHHSPDPDEQAEKMRADLENSGFSELLQRVERAITTAA 587 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +W+A A DV + Q + L++++ L R+ ++ E + + E + + L Sbjct: 588 VWAARPGAARDDVLATWHQLVTLHRQWHSLLRELKDAELALGE-------EPSEPNMGWL 640 Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647 +V ++ +I+ EA++EGFG++SGR Sbjct: 641 RDVKARMAEIDGTEALVEGFGELSGR 666 >gi|153009016|ref|YP_001370231.1| DNA primase [Ochrobactrum anthropi ATCC 49188] gi|151560904|gb|ABS14402.1| DNA primase [Ochrobactrum anthropi ATCC 49188] Length = 656 Score = 508 bits (1308), Expect = e-141, Method: Composition-based stats. Identities = 278/663 (41%), Positives = 394/663 (59%), Gaps = 28/663 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRASFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF + L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFENQLQSAVGAKARAYLRDRGLSTATQQSFRIGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A + + II VEGYMDV++L QAG+ VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKAC-----QPQAGEPAKSIIAVEGYMDVIALAQAGIHQVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP VLCFDGD GLRAAY+A+DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPVLCFDGDGAGLRAAYRAVDLGLPALQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF ++ ++ PLVDM+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPAAFHVVLRDARPLVDMVWTRETTGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467 R +YSQ +RDR Q F + + G+ R D S L+ Sbjct: 416 RRHYSQDMRDRAQAFFGQGRQGYQVGGQRNSSFNRRNDGGRGRGGPAGGNGRLAISDSLV 475 Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +S+LVKG LRE A++LTL+NHP +++E ++ LA + + L+ L + Sbjct: 476 RSTLVKGGRPGAGSHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHEALKSLHLAMLD 535 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L G GE ++ L+ V+ A LW+AT A D R+ +QAL L Sbjct: 536 VLAAGHMEDGHAMRHALVNAGHGEQIEMLELVVKGAKLWTATALAAEDDAREALRQALHL 595 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 ++R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG Sbjct: 596 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 648 Query: 645 SGR 647 SGR Sbjct: 649 SGR 651 >gi|163761138|ref|ZP_02168215.1| DNA primase [Hoeflea phototrophica DFL-43] gi|162281689|gb|EDQ31983.1| DNA primase [Hoeflea phototrophica DFL-43] Length = 680 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 275/670 (41%), Positives = 409/670 (61%), Gaps = 37/670 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + F+ D+ +PIS++IG++V WDR+KTN +GD+WACCPFH EK+PSFHC D KG Sbjct: 17 RFSPSFLDDIRERVPISDVIGRHVTWDRKKTNTSRGDWWACCPFHGEKSPSFHCEDRKGR 76 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C V GDH FL+ L +F E+V+R+A +AGV +P DP+ ++E+ + L ++ Sbjct: 77 YHCFGCGVSGDHFKFLTELENLNFPEAVERIADMAGVAMPAPDPEAARREQKRASLEDVM 136 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E+A +FF L+ A + YL +RG+ I F+LGY+PDSR +L+EHL +G ++ Sbjct: 137 EMAAEFFESQLQGAEGAKARAYLRDRGLSGRTIVAFRLGYSPDSRSALKEHLASRGVDKD 196 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +I GL++ G + A SYDRFR+R++FPI SSR +VIAFGGR LS KYLNS ET L Sbjct: 197 QIEACGLVVHGPDIAVSYDRFRDRIMFPILSSRERVIAFGGRALSPTAPAKYLNSNETEL 256 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK LYNF A +++VEGYMDV++L QAGV+N V+ LGTA Sbjct: 257 FHKSNVLYNFARARRA----------CGQDGTLVVVEGYMDVIALAQAGVENAVAPLGTA 306 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE QL+L+W+++P+ VLCFDGD+ G RAA + DL L + PG + F +L G+DPD Sbjct: 307 LTENQLKLIWRVTPQPVLCFDGDEAGQRAANRTADLALPLIAPGRSLRFAVLPPGKDPDD 366 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G+ F++L+ ++ L D++W RE + F TP+ RAELE L+ + I D+ +R Sbjct: 367 LVRQDGRAPFDQLLEQARALADVVWSREAGSGVFETPESRAELEARLRQITSQIADESVR 426 Query: 422 YYYSQAIRDRLQQLFQKYITEHSG-----------------------YGRYWKKNARHRD 458 +Y Q +R+R+Q F ++ + Sbjct: 427 RHYQQDMRERMQAFFGGGGYGQRNGDGRGGYQRGGGGRGGSERGYGGGRGGGPQSMQSSR 486 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 S+RL +S LV+G + PSLRE L++T+ NHP +L E + EL+ + +D+ L ++ Sbjct: 487 GLAVSERLTRSGLVRGH-GEMPSLRETVLVMTVANHPQMLHEDFDELSTLEFDDKGLMRI 545 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 W + F E +++ L G GELL +L+ QVR+A +W+AT EA D R+GY Sbjct: 546 WQVMLDAASVGGRFDRERLYEALEAEGQGELLARLESQVRNARIWTATVEAAAEDAREGY 605 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 QALAL+KR R L QK E+E+ I + +AE++ +++ L +V ++I ++E+QEA+I Sbjct: 606 SQALALHKRTRDLKWQKAELERDIVECE---DAEQSYAIMAALQQVQLEIARLENQEAII 662 Query: 639 EGFGKMSGRL 648 +GFG +SGR+ Sbjct: 663 DGFGVLSGRV 672 >gi|209550283|ref|YP_002282200.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536039|gb|ACI55974.1| DNA primase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 666 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 307/661 (46%), Positives = 420/661 (63%), Gaps = 14/661 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ D+ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDDIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A R YL +RG+ IE F+LGYAPDSR +L+E+L KG ++ Sbjct: 121 MEMATQFFQDQLQTANGARARAYLRDRGLTGRTIETFRLGYAPDSRNALKEYLAGKGVTK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ +N SYDRFR+R++FPI SSR +VIAFGGR +S KYLNS ET Sbjct: 181 EQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVIAFGGRAMSSDAPAKYLNSNETE 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG LYNF A +Q R D + +++ II VEGYMDV++L QAG++N V+ LG Sbjct: 240 LFHKGNVLYNFARARRAIQGPSRGDAQDDNASGTIIAVEGYMDVIALYQAGIENAVAPLG 299 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L L HL PG V F LL G+DP Sbjct: 300 TALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAELALPHLKPGRSVRFALLPDGKDP 359 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G+ F+K++ ++ PL +MLW RE F+TP+ RAELE LK + I D+ Sbjct: 360 DDLVRDDGRAPFDKVMSQAKPLSEMLWSREVNTGKFDTPEARAELEARLKQLVAVIADEN 419 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471 +R +Y Q IRDRL FQ + R + + +S Sbjct: 420 VRRHYQQDIRDRLNAFFQPQFQNRNNGERRGFSGNSRTGRDNAVKAGPKSPSLISDRLAR 479 Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFV 527 +LRE+ L LT++NHP+++ + Y E+A I YD+ EL++LWS + V Sbjct: 480 SGPVRGHRDNTALRESVLALTIVNHPSLMIDDYDEIAAIDYDSRELKQLWSAVLGAAAAV 539 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + E + +RL GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA +KR Sbjct: 540 AGPHLTREYLTERLEFEGFGPLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKR 599 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + L RQK E+E++IA T G+ E L+ EVH + ++E+QEA+I+GFG +SGR Sbjct: 600 AKALRRQKMELEREIALATEAGDGEAIVQLMRAQQEVHFEGVRLENQEAIIDGFGVLSGR 659 Query: 648 L 648 + Sbjct: 660 V 660 >gi|13472239|ref|NP_103806.1| DNA primase [Mesorhizobium loti MAFF303099] gi|14022984|dbj|BAB49592.1| DNA primase [Mesorhizobium loti MAFF303099] Length = 652 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 260/657 (39%), Positives = 373/657 (56%), Gaps = 27/657 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS +IGQ V WDRRKTNA +GD+WACCPFH EK+PSFHC D KG Sbjct: 9 MRFPPAFLDEIRDRVPISQVIGQRVAWDRRKTNASRGDFWACCPFHGEKSPSFHCEDKKG 68 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+++A +AGVP+PV D + E++EK + L + Sbjct: 69 RYHCFGCSVSGDHFKFLTELDGMSFPEAVEKIADMAGVPMPVRDAQEERREKERASLTDV 128 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ + YL +RG+ + F+LGYAPDSR +L+EHL KG + Sbjct: 129 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQQSFRLGYAPDSRNALKEHLAAKGVPK 188 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I GL+ GD+ SYD FR+R++FPI SRG++IAFGGR L+ KY+NSP+T Sbjct: 189 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALAPDALAKYMNSPDTE 248 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A L K +I VEGYMDV++L QAG +NVV+ LGT Sbjct: 249 LFHKGNVLYNFARARKALAKD----------GTVIAVEGYMDVIALAQAGFENVVAPLGT 298 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+++P +LCFDGD GL+AA++A DL L + G F LL G+DPD Sbjct: 299 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADLALPSVQAGRSARFALLPEGKDPD 358 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF ++ ++ PLVD+LW RET F+TP+ RAEL L+ + I+D+ Sbjct: 359 DLVKAEGPDAFRAVLADARPLVDLLWMRETAGGVFDTPERRAELGKTLRELASRIRDEST 418 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV-------- 472 RY+Y Q +R+R + F G + + G + + Sbjct: 419 RYHYQQEMREREKSFFGSQRDARQGRQDWKPGQGKAAAPGGQFAKPGGGRMAITESLGQS 478 Query: 473 --KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + S+ S+REA +L+ L+NHP ++ E + + + N+ELQ+L + + Sbjct: 479 ALVKRGSEGMSVREATILVALVNHPPLIDENFAHVEFLDLANSELQRLHAAILDAMAHDM 538 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + G E+ ++ +R A W A A + D R QAL L + R Sbjct: 539 ANDRHAVVATIERAGCAEIWERAVGLIRRARQWPALETAALDDARDALNQALHLQRSART 598 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 L ++ ++ E + EA+ + L E+ Q +++ EA+IEGFG SGR Sbjct: 599 LHKELKQAEAAL-------EADPSDENFRHLIEIQAQFQDVQATEALIEGFGVSSGR 648 >gi|239832357|ref|ZP_04680686.1| DNA primase [Ochrobactrum intermedium LMG 3301] gi|239824624|gb|EEQ96192.1| DNA primase [Ochrobactrum intermedium LMG 3301] Length = 668 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 280/663 (42%), Positives = 395/663 (59%), Gaps = 28/663 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 13 MRFPPSFLDEIRDRVPISTLIGTRASFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 72 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 73 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 132 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L+NA + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 133 MELAAQFFESQLQNAVGAKARAYLRDRGLSTATQQAFRIGYAPESRNALKEFLAGKGVSR 192 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 193 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 252 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ VV+ LGT Sbjct: 253 LFHKGRVLYNGLRARKACQPQG-----GEPAKSIIAVEGYMDVIALAQAGIHQVVAPLGT 307 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP VLCFDGD GLRAAY+A+DL L L PG + F LL G+DPD Sbjct: 308 ALTEEQLDLLWRISPEPVLCFDGDGAGLRAAYRAVDLGLPALQPGKSLRFALLPEGQDPD 367 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF ++ ++ PLVDM+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 368 DLVKAEGSAAFHAVLRDARPLVDMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 427 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------GPSQRLM 467 R +YSQ +RDR Q F + + G G+ R + S L+ Sbjct: 428 RRHYSQDMRDRAQAFFGQGRQGYQGGGQRNSSFNRRNEGGRGRGGPAGGSGRLAISDSLV 487 Query: 468 QSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +S+LVKG LRE A++LTL+NHP +++E ++ LA + + L+ L + Sbjct: 488 RSTLVKGGRPGAGSHAPLRETAIVLTLLNHPRLIEEDFETLAALDLGHEALRSLHLAMLD 547 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + L G GE ++ L+ V+ A LW+AT A D R+ +QAL L Sbjct: 548 VLAAGHMEDGHAMRRALVNAGHGEQIEMLELVVKGAKLWTATALAAEDDAREALRQALHL 607 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 ++R R L ++ +E + E ++T L + L ++ QI + ++ EA+I+GFG Sbjct: 608 HQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQILKADATEALIDGFGLS 660 Query: 645 SGR 647 SGR Sbjct: 661 SGR 663 >gi|319782037|ref|YP_004141513.1| DNA primase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167925|gb|ADV11463.1| DNA primase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 645 Score = 505 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 256/658 (38%), Positives = 377/658 (57%), Gaps = 28/658 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS++IGQ V WDR+KTNA +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFPPAFLDEIRDRVPISSVIGQRVAWDRKKTNAPRGDYWACCPFHGEKSPSFHCEDKKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+++A +AGVP+PV D + E++EK + L + Sbjct: 61 RYHCFGCSVSGDHFKFLTELDGMSFPEAVEKIADMAGVPMPVRDAQEERREKERASLTDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ + YL +RG+ + F+LG+APDSR +L+EHL +G + Sbjct: 121 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQQSFRLGFAPDSRNALKEHLAARGVPK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I GL+ GD+ SYD FR+R++FPI SRG++IAFGGR L KY+NSP+T Sbjct: 181 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALQPDALAKYMNSPDTE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A L K +I VEGYMDV++L QAG +NVV+ LGT Sbjct: 241 LFHKGNVLYNFARARKALAK----------GGTVIAVEGYMDVIALAQAGFENVVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+++P +LCFDGD GL+AA++A D+ L + G F LL G+DPD Sbjct: 291 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADMALPSVQAGRSARFALLPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF ++ E+ PLVD+LW RET F+TP+ RAELE L+ + I+D+ L Sbjct: 351 DLVKAEGPDAFRSVLAEARPLVDLLWMRETAGGVFDTPERRAELEKTLRELTSRIRDESL 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHS-----------GYGRYWKKNARHRDQKGPSQRLMQS 469 RY+Y Q +R+R+ F + + A+ + + Sbjct: 411 RYHYQQEMRERVLSFFGSQRSGRQDGGRPGQRGQGKAAAPGGQFAKSGGGRIAITESLGQ 470 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 S + + + S+REA +++ L+NHPA++ E + + + N++L++L + + Sbjct: 471 SALVKRGGEGMSVREATIIVALVNHPALIDENFAHIEFLDLANSDLRRLHAAILDAMAHD 530 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + G E+ ++ +R W A A + D R + QAL L + R Sbjct: 531 MANDRQAVIATIERAGCAEIWERAVGLIRRMRQWPALETAALEDARDAFSQALHLQRSAR 590 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 L ++ ++ E +A + T L E+ Q +++ EA+IEGFG SGR Sbjct: 591 TLHKELKQAEAALA-------TDPTDENYRHLIEIQAQFQDVQATEALIEGFGVSSGR 641 >gi|39934362|ref|NP_946638.1| DNA primase [Rhodopseudomonas palustris CGA009] gi|39648211|emb|CAE26730.1| putative DNA primase [Rhodopseudomonas palustris CGA009] Length = 669 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 234/686 (34%), Positives = 355/686 (51%), Gaps = 61/686 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ DL + +S ++G+ V + ++ PF EKTPSF ND K Sbjct: 1 MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AGV LPV P ++E+ + L + Sbjct: 56 AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQSPDTARQEQRRKSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A ++F +L + R YL +R I F+LGYA + RY+L+EHL + G Sbjct: 116 MELAANYFAENLASRAGARARGYLADRAILPGTQVKFRLGYASNERYALKEHLGKHGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL G + +D+FR+R++FPI RG+VIAFGGR L K + KYLNSPET Sbjct: 176 SDMIEAGLLSAGPDIPVPFDKFRDRVMFPITDLRGRVIAFGGRALEKDVAAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A +I+VEGY+DV++L AG V+ LGT Sbjct: 236 LFHKGDNLYNHAPARKAAH----------DGGAVIVVEGYVDVIALVTAGFPATVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+ LWK++ +LCFDGD G +AAY+A DL L HL PG + F LL G+DPD Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A E++I + PL DMLW RE E F TP+ RA LE + N I+D+ + Sbjct: 346 DLARAGGRLAVEEVIGAARPLADMLWAREVEGGLFATPERRAALEARINELSNGIQDEVV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEH--------------------------SGYGRYWKKNA 454 R YY Q + +RL+ F G GR+ + Sbjct: 406 RRYYRQDLAERLRAAFAPPGGYGGGFGGGFRGGGGGDSGRRFAPRDGFPQGGGRFAPRGR 465 Query: 455 R-------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 R + + SS + S REA +L++L+NHP +L + +E+A Sbjct: 466 PGQPAPMLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAA 525 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + E +L + + + F + + E++ L + G E L++++R + + Sbjct: 526 LEFAHPEAHRLRAAIIAAFAQHHHRGDDPVGQAEKLRADLVKAGLSEQLQRVERAITTSA 585 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +W + +A DV +QQ +AL+++ L R+ ++ E + + + + L Sbjct: 586 VWGSGPKAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMRWL 638 Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647 ++V ++ Q+E EA+IEGFG+ SGR Sbjct: 639 NDVKARLAQVEGTEALIEGFGESSGR 664 >gi|192289890|ref|YP_001990495.1| DNA primase [Rhodopseudomonas palustris TIE-1] gi|192283639|gb|ACF00020.1| DNA primase [Rhodopseudomonas palustris TIE-1] Length = 669 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 235/686 (34%), Positives = 356/686 (51%), Gaps = 61/686 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ DL + +S ++G+ V + ++ PF EKTPSF ND K Sbjct: 1 MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AGV LPV P ++E+ + L + Sbjct: 56 AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQSPDSARQEQRRKSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A ++F +L + R YL +R I F+LGYA + RY+L+EHL + G Sbjct: 116 MELAANYFAENLASRAGARARGYLADRAILPGTQVKFRLGYASNERYALKEHLGKHGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL G + +D+FR+R++FPI RG+VIAFGGR L K S KYLNSPET Sbjct: 176 SDMIEAGLLSAGPDIPVPFDKFRDRVMFPITDLRGRVIAFGGRALEKDVSAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A +I+VEGY+DV++L AG V+ LGT Sbjct: 236 LFHKGDNLYNHAPARKAAH----------DGGAVIVVEGYVDVIALVTAGFPATVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+ LWK++ +LCFDGD G +AAY+A DL L HL PG + F LL G+DPD Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A E++I + PL DMLW RE E F TP+ RA LE + N I+D+ + Sbjct: 346 DLARAGGRLAVEEVIGAARPLADMLWAREVEGGLFATPERRAALEARINELSNGIQDEVV 405 Query: 421 RYYYSQAIRDRLQQLFQK----------------------YITEHSGYGRYWKKNARHRD 458 R YY Q + +RL+ F G+ + + A Sbjct: 406 RRYYRQDLAERLRAAFAPPGGYGGGFGGGFRGGGGGDSGRRFAPRDGFPQSGGRFAPRGR 465 Query: 459 QKGPSQRLMQ-----------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 P+ L + SS + S REA +L++L+NHP +L + +E+A Sbjct: 466 PGQPAPMLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAA 525 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + E +L + + + F + + E++ L + G E L++++R + + Sbjct: 526 LEFAHPEAHRLRAAIIAAFAQHHHRGDDPVGQAEKLRADLVKAGLSEQLQRVERAITTSA 585 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +W + +A DV +QQ +AL+++ L R+ ++ E + + + + L Sbjct: 586 VWGSGPKAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMRWL 638 Query: 622 HEVHIQIHQIESQEAMIEGFGKMSGR 647 ++V ++ Q+E EA+IEGFG+ SGR Sbjct: 639 NDVKARLAQVEGTEALIEGFGESSGR 664 >gi|260464076|ref|ZP_05812271.1| DNA primase [Mesorhizobium opportunistum WSM2075] gi|259030247|gb|EEW31528.1| DNA primase [Mesorhizobium opportunistum WSM2075] Length = 648 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 257/656 (39%), Positives = 370/656 (56%), Gaps = 21/656 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS +IGQ V WDR+KTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFPPAFLDEIRDRVPISQVIGQRVAWDRKKTNTSRGDYWACCPFHGEKSPSFHCEDKKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+++A +AGVP+PV D + E++EK + L + Sbjct: 61 RYHCFGCSVSGDHFKFLTELEGLSFPEAVEKIADMAGVPMPVRDEREEQREKERASLTDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ + YL +RG+ F+LG+APDSR +L+EHL KG + Sbjct: 121 MEMATAFFQERLQGPEGAKARAYLRDRGLTPATQHSFRLGFAPDSRNALKEHLAAKGVPK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I GL+ GD+ SYD FR+R++FPI SRG++IAFGGR L+ KY+NSP+T Sbjct: 181 ADIEACGLVRHGDDIPVSYDWFRDRIMFPIPDSRGKIIAFGGRALAADAVAKYMNSPDTE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYNF A + K +I VEGYMDV++L QAG +NVV+ LGT Sbjct: 241 LFHKGNVLYNFARARQAMAKGALA-----KGGTVIAVEGYMDVIALAQAGFENVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+++P +LCFDGD GL+AA++A DL L + G F LL G+DPD Sbjct: 296 ALTENQLELLWRMAPEPMLCFDGDKAGLKAAWRAADLALPSVQAGRSARFALLPEGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF ++ ++ PLVD+LW RET F+TP+ RAELE L+ + I+D+ L Sbjct: 356 DLVKAEGPDAFRAILADARPLVDLLWMRETAGGVFDTPERRAELEKTLRELTSRIRDESL 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG------ 474 RY+YSQ +R+R+ F + + G + + Sbjct: 416 RYHYSQEMRERVLSFFGSQRGARQSRQDWKPGQGKAAAPGGQFAKAGSGRMAITESLGQS 475 Query: 475 ---KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K + S+REA +++ L+NHP ++ E + + + N +LQ+L + Sbjct: 476 ALVKRGEGMSVREATIIVALVNHPPLIDENFAHVEFLDLANADLQRLHGAILDAMAHDMA 535 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + G E+ ++ +R A W A A + D R QAL L + R L Sbjct: 536 NDRHAVVATIERAGCAEIWERAVGLIRRARQWPALETAALDDARDALNQALHLQRSARTL 595 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 ++ ++ E + EA+ + L E+ Q +++ EA+IEGFG SGR Sbjct: 596 HKELKQAEAAL-------EADPSDENFRHLIEIQAQFRDVQATEALIEGFGVSSGR 644 >gi|299132000|ref|ZP_07025195.1| DNA primase [Afipia sp. 1NLS2] gi|298592137|gb|EFI52337.1| DNA primase [Afipia sp. 1NLS2] Length = 665 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 233/685 (34%), Positives = 356/685 (51%), Gaps = 61/685 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ DL +P+S ++G+ V R ++ PFH EKTPSF ND KG Sbjct: 1 MRFTPQFLDDLRARLPVSEVVGKRVKLKRAGK-----EWKGLSPFHQEKTPSFTVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS G+ F+ G F+E+V+RLA++AG+ LP V P + E+ + L + Sbjct: 56 FYHDFSSGKHGNIFDFVMETEGVGFVEAVERLASLAGMALPAVTPDAARHEQRRRTLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A+ FF +L + + YL +R I F++GYAP R++L+EHL G S Sbjct: 116 MELASKFFAETLASRTGAKARGYLADRSISPATQLQFRMGYAPGERFALKEHLGSHGVSV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGLLI GD+ YDRFR+R++FPI +R ++IAFGGR L K KYLNSPET Sbjct: 176 DDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDARNRIIAFGGRALEKDVPAKYLNSPETT 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + +I+ EGY+DV++L AG V+ LGT Sbjct: 236 LFHKGDNLYNQATARQAAH----------DGAPVIVAEGYVDVIALVGAGFPAAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++ +LCFDGD G RAA++A DL L HL+PG + F ++ G+DPD Sbjct: 286 ALTESQLSLLWKMADEPLLCFDGDGAGQRAAFRAADLALPHLMPGKSLRFAMMPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A +++ + PL DM+W R TE F TP+ RA LE L N I+D+ + Sbjct: 346 DLARTGGRAALDEVFAAARPLADMIWARATEGGEFATPERRAALEAKLHELTNGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-------------------- 460 R YY Q +RL+++F G + R + Sbjct: 406 RRYYRQDFAERLRRMFAPEGAAPGGGYGGARGGFRSESPRRFPGRGGFGAGSGGRPGSRA 465 Query: 461 -------------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 S +L S L++G+ S S REA +L +LINHP +L + +E+A Sbjct: 466 NLSTAALGRGPYQAASPQLANSPLMRGQRSA-LSRREALILQSLINHPWLLHDHLEEIAG 524 Query: 508 IRYDNNELQKLWSFLFSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 + + + KL + + + F + I L + + E ++++++ + + Sbjct: 525 LELAHPDAVKLRAGIIAAFANYGAADDPEAERDRIASWLQKNNYSEQIQRVEKALTTKDV 584 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 W A DV +QQ +AL+++ L R+ ++ E+ + ++ L+ Sbjct: 585 WGTQAGAAREDVLSTWQQLVALHRQSHALLRELKDAEQALGHDGSEANN-------VWLN 637 Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647 +V ++ + EA+IEGFG+ SGR Sbjct: 638 DVKARLAAADGTEALIEGFGESSGR 662 >gi|316935467|ref|YP_004110449.1| DNA primase [Rhodopseudomonas palustris DX-1] gi|315603181|gb|ADU45716.1| DNA primase [Rhodopseudomonas palustris DX-1] Length = 668 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 230/685 (33%), Positives = 354/685 (51%), Gaps = 60/685 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ DL + +S ++G+ V + ++ PF EKTPSF ND K Sbjct: 1 MRFSPQFLDDLKARLSVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AGV LPV + ++E+ + L + Sbjct: 56 AWFDFSSGKNGSIFDFVMLTEGVDFPEAVERLAAMAGVALPVQTQESARQEQRRKSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A ++F +L + R YL +R I F+LGYA + R++L+EHL + G Sbjct: 116 MELAANYFADNLASRAGARARGYLADRAILPGTQVKFRLGYASNERFALKEHLGKHGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL G + +D+FR+R++FPI RG+VIAFGGR L K + KYLNSPET Sbjct: 176 ADMIEAGLLSAGPDIPVPFDKFRDRVMFPILDLRGRVIAFGGRALEKDVAAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A +I+VEGY+DV++L G V+ LGT Sbjct: 236 LFHKGDNLYNHAPARKAAH----------EGGSVIVVEGYVDVIALVTVGFPATVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+ LWK++ +LCFDGD G +AAY+A DL L HL PG + F LL G+DPD Sbjct: 286 ALTEAQLQHLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A +++I + PL DMLW RE E F TP+ RA LE + N I+D+ + Sbjct: 346 DLARAGGRLAVDEVISAARPLADMLWAREAEGGMFATPERRAALEARINELSNGIRDEIV 405 Query: 421 RYYYSQAIRDRLQQLFQK---------------------YITEHSGYGRYWKKNARHRDQ 459 R +Y Q + DRL+ F G+ + + A Sbjct: 406 RRHYRQDLTDRLRAAFAPAGGFGGFGGGFRGGGGGDSGRRFAPRGGFPQGGGRFAPRGRP 465 Query: 460 KGPSQRLMQ-----------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 P+ L + SS + S REA +L++L+NHP +L + +E+A + Sbjct: 466 GQPAPTLGRGPYQIASPDLISSPIMRGQRSAMSRREALILISLLNHPWLLDDHLEEIAAL 525 Query: 509 RYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 + + E +L + + + F + + E++ L + G E L++++R + + + Sbjct: 526 EFAHPEAHRLRAAIIAAFAQHHHRGDDPAGQAEKLRADLVKAGLSEQLQRVERAITTSAV 585 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 W+ A DV +QQ +AL+++ L R+ ++ E + + + + L+ Sbjct: 586 WAVGPAAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGD-------DGSEANMQWLN 638 Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647 +V ++ Q+E EA+IEGFG+ SGR Sbjct: 639 DVKARLAQVEGTEALIEGFGESSGR 663 >gi|91978434|ref|YP_571093.1| DNA primase [Rhodopseudomonas palustris BisB5] gi|91684890|gb|ABE41192.1| DNA primase [Rhodopseudomonas palustris BisB5] Length = 685 Score = 497 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 230/693 (33%), Positives = 360/693 (51%), Gaps = 59/693 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L + +S+++G+ V + ++ PF EKTPSF ND K Sbjct: 1 MRFTPQFLDELKARLLVSDVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AG+ LP P ++E+ + L + Sbjct: 56 AWFDFSSGKNGSIFDFIMQTDGVDFPEAVERLAAMAGLALPAATPDAARQEQRRRSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F +L + R YL +RGI F++G+A + RY+L+EHL G Sbjct: 116 MELAAAYFADNLASRAGARARGYLADRGILPSTQVKFRIGFAANERYALKEHLGSHGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL GD+ +D+FR+R++FPI RG+VIAFGGR L K + KYLNSPET Sbjct: 176 GDMIEAGLLSAGDDIPVPFDKFRDRVMFPITDIRGRVIAFGGRALEKDVAAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + NS++ +I+VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGDNLYNLATARKAAHDAA-GKSTPNSAAAVIVVEGYIDVIAMVTAGFAATVAPLGT 294 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLWK++ +LCFDGD G +AA++A DL L HL PG + F LL G+DPD Sbjct: 295 ALTENQLQLLWKMADEPILCFDGDRAGQKAAFRAADLALPHLKPGKSLRFALLPEGQDPD 354 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A E++I + PL D+LW RE E SF TP+ RA LE + I+D+ + Sbjct: 355 DLARAGGRLAIEEVIGAARPLADLLWSREAEGGSFATPERRAALEARINELSGSIRDEVV 414 Query: 421 RYYYSQAIRDRLQQLFQKYITEH--------------------------------SGYGR 448 R YY Q +RL+ F G GR Sbjct: 415 RRYYRQDWAERLRAAFAPQGGFGGGFGGGFGGGFRGGAGRGGDSRRGFPPRGGFPQGGGR 474 Query: 449 YWKKNARHRDQKGP--------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + P + + SS + S REA +L +L++HP +L + Sbjct: 475 FAPRGQPSGLSSPPFGRGAYQVASPDLASSPIMRGQRSAMSRREALILQSLLHHPWLLHD 534 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLD 554 +E+A + + + E +L + + + F + + E++ L + G E L++++ Sbjct: 535 HLEEIAALEFAHPEAHRLRAAIIAAFAQDHHHGDDPAGHAEKLRADLVKAGLSEQLQRVE 594 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 R + + +W A + A DV +QQ +AL+++ L R+ ++ E + + ++ Sbjct: 595 RAITTSAVWGAGSGAAREDVLSTWQQLVALHRQSHSLLRELKDAELALGEDGSEANN--- 651 Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + L++V ++ ++E EA+IEGFG+ SGR Sbjct: 652 ----AWLNDVKARLSEVEGTEALIEGFGESSGR 680 >gi|315122784|ref|YP_004063273.1| DNA primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496186|gb|ADR52785.1| DNA primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 650 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 488/650 (75%), Positives = 566/650 (87%), Gaps = 2/650 (0%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+YP DFI DLLI PIS+LIGQ+V+WDR+KTNAVKGDYW+CCPFH+EK PSFHC+D KG Sbjct: 1 MHYPHDFIDDLLIRTPISHLIGQHVNWDRKKTNAVKGDYWSCCPFHNEKNPSFHCDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCFSCH G+HL+FLS LLGCSFIESVQ+LA IAGV LP DP ++KK+K QT LI+L Sbjct: 61 VYYCFSCHATGNHLTFLSTLLGCSFIESVQKLAVIAGVSLPTFDPILDKKQKKQTSLIQL 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 I++A DFFH SLKN +KRL YYLD+RGI+SH+IE FKLGYAPDSR+SL E+L KGF++ Sbjct: 121 IDIAADFFHQSLKNNDNKRLRYYLDKRGINSHSIETFKLGYAPDSRHSLEEYLHTKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EKIIEAGLLI GDN T YDRFR+RLIFPI SSRGQ IAFGGR+LSKG+++KYLNSPETI Sbjct: 181 EKIIEAGLLIHGDNITTPYDRFRDRLIFPILSSRGQGIAFGGRSLSKGDNIKYLNSPETI 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKGKNLYNFFGALNY Q+SIR+DV++ SSSFI+LVEGYMDV+SL QAG+QNVVSSLGT Sbjct: 241 LFHKGKNLYNFFGALNYRQRSIRQDVQKQSSSFIVLVEGYMDVVSLHQAGIQNVVSSLGT 300 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LTE QLRLLWKLSPR+VLCFDGDDPGLRAAYKA+DLVL HL GN VNF+LLS GEDPD Sbjct: 301 SLTEDQLRLLWKLSPRVVLCFDGDDPGLRAAYKAVDLVLSHLSIGNSVNFILLSEGEDPD 360 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SF++ YGK AFEKLI+ES+PLVD+LWKRETE SF TPD RAELE LKNC++ I DQKL Sbjct: 361 SFVQRYGKIAFEKLILESVPLVDVLWKRETEYHSFETPDARAELEGRLKNCLDRITDQKL 420 Query: 421 RYYYSQAIRDRLQQLFQKYITEHS--GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 RYYY ++I++RL LFQ HS G+G+YW K ++RD+ GPSQRLMQSSLVKGK SK Sbjct: 421 RYYYFKSIQERLHHLFQTNPRPHSSYGHGQYWGKKVKYRDKAGPSQRLMQSSLVKGKNSK 480 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 KPSLREAALLLTLINHP ILQEQ EL DI YDN+ELQK+WSFLFS+FV QK F EEI+ Sbjct: 481 KPSLREAALLLTLINHPKILQEQCYELTDISYDNSELQKMWSFLFSEFVVQKDFSREEIN 540 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q+LC RGFGELL++LD+QVRDAGLWSAT EA+IVDVRQGYQQA+ALYKRFRLLSRQK ++ Sbjct: 541 QKLCTRGFGELLQRLDKQVRDAGLWSATAEADIVDVRQGYQQAVALYKRFRLLSRQKADL 600 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 EKQIAQ+T +GE +KT LISIL+++HIQI+ IE QEA+IEGFGKMSGR+ Sbjct: 601 EKQIAQMTEQGEEKKTTTLISILNDIHIQINTIECQEAIIEGFGKMSGRV 650 >gi|298292325|ref|YP_003694264.1| DNA primase [Starkeya novella DSM 506] gi|296928836|gb|ADH89645.1| DNA primase [Starkeya novella DSM 506] Length = 645 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 240/662 (36%), Positives = 361/662 (54%), Gaps = 37/662 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +P+S ++G+ V ++ ++ PF+ EKTPSF+ ND KG Sbjct: 1 MRFPPSFLDEIRARLPVSEVVGKRVQLKKQGR-----EWRGLSPFNPEKTPSFYVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL + G F E+V+RLA++AG+P+PV + E++E + L + Sbjct: 56 FYHCFSSGKHGDQFDFLMEVEGLPFPEAVERLASMAGLPMPVQSREEEQRESRRKTLHEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A ++ L++ + YL +RG+ F+LGY+ R++L+E L KG Sbjct: 116 MELAAKYYEAVLQSRAGAKGRGYLADRGLGPSTQGRFRLGYSLPDRFALKEALGGKGIPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++EAGLLI ++ A YDRFR+R++FPI RG+V+AFGGR L K KYLNSPET Sbjct: 176 EDMVEAGLLITAEDVAIPYDRFRDRVMFPITDLRGRVVAFGGRALEKDVPAKYLNSPETS 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN F A + + +I VEGY+DV++L +AG V+ LGT Sbjct: 236 LFHKGSLLYNGFSARAAAH----------NGAPVIAVEGYVDVIALVEAGFSGAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLWK++ VL FDGD G RAAY+AIDL L HL PG ++F L G+DPD Sbjct: 286 ALTEEQLALLWKMAAEPVLLFDGDKAGRRAAYRAIDLALPHLKPGVSLSFGTLPDGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ A + ++ ++ PL D+LW RE E+ S +TP+ RA LE + + I D+ + Sbjct: 346 DLVRAGGREAVDAVLAQARPLADVLWSREMESASVDTPERRAALEARIGEVVRVIADETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG---------------YGRYWKKNARHRDQKGPSQR 465 R +Y + DR ++LF + G GR ++ R G + Sbjct: 406 RKHYRSELMDRFRRLFTPVAVQGEGSRRGSGDYQGRFDRSSGRGGRRPNDRRPVSGVAGE 465 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 M+ S + + + EA LL INHP +L + +ELAD+ + N E +L L Sbjct: 466 GMRRSALVRGAAAEIPRNEALLLFAAINHPWLLDQCAEELADLPFQNKEAAELRRALLDA 525 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ E + RL +G L+ +L R W A +A DV + Q L L+ Sbjct: 526 HMDGDDADHERLAARLESQGHAPLVARLARAAIARHDWPAFADAARSDVELWWHQRLVLH 585 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 +R LS+ +E EK++A+ E T + + +V Q+ ++ EA++EGFG S Sbjct: 586 RRGHALSKDLKEAEKRLAE-------EPTDMNWARFLDVQRQLAALDGTEALVEGFGAAS 638 Query: 646 GR 647 GR Sbjct: 639 GR 640 >gi|154245187|ref|YP_001416145.1| DNA primase [Xanthobacter autotrophicus Py2] gi|154159272|gb|ABS66488.1| DNA primase [Xanthobacter autotrophicus Py2] Length = 639 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 225/657 (34%), Positives = 342/657 (52%), Gaps = 34/657 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +P+S ++G+ V ++ ++ PF+ EKTPSF ND KG Sbjct: 1 MRFPPAFLDEIRARLPVSEVVGRRVKLKKQGR-----EFAGLSPFNAEKTPSFFVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL G F E+V+RLAA+AG+PLP P+ KE+ + L + Sbjct: 56 FYHCFSSGKHGDVFDFLMETEGVPFGEAVERLAAMAGLPLPQETPEAAAKERRRHTLFEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +A F +L++ + YL +R + + + F LGYA R+ L+E L + G Sbjct: 116 MSLAARHFEETLQSRLGAKARGYLADRELGAATQKRFGLGYAAGERFRLKEALGKAGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++EAGLLI GD+ YDRFR+R++FPI +G+++ FGGR L K KYLNSPET+ Sbjct: 176 EDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDLKGRIVGFGGRALEKDVPAKYLNSPETV 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A S + +I VEGY+DV+++ +AG V+ LGT Sbjct: 236 LFHKGSLLYNGAAARTAA----------QSGARVIAVEGYVDVIAMAEAGFGATVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLW++S +L FDGD G RAA++AIDL L HL G + F L G+DPD Sbjct: 286 ALTEEQLQLLWRMSEEPLLLFDGDKAGRRAAHRAIDLALPHLKAGRSLAFATLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G+ A E ++ ++ PLV LW RE+E + +TP+ RA LE L ++ I D+ + Sbjct: 346 DLIRRSGRDAMEAVLAQARPLVAELWARESEAATLDTPERRAGLEARLGEVVSAIADETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y Q + R L + R K+ L + +G + Sbjct: 406 RKHYRQELLGRFNALVSPQDRAPARARREGWKDGWQPSGGRRGTPLPPPLVPRGTEIARS 465 Query: 481 SLR----------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 +L EA LL LINH +L E +++A + N E +L L +E Sbjct: 466 ALVRGPMAALPRNEALLLFCLINHTFLLDEADEDVASLPLANPEADRLRRILIEAHLEG- 524 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + +RL L +++ W A + DVR + Q AL+++ Sbjct: 525 -ADADALTERLGRADIDALTRRVKALANPRHDWPAYPDTAQNDVRLWWHQRTALHRKAHA 583 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 LSR+ +E E+ + + + + + L +V ++ ++ EA++EGFG SGR Sbjct: 584 LSRELKEAERSLGE-------DPSEANFAWLRDVRERLSALDGTEALVEGFGASSGR 633 >gi|86751239|ref|YP_487735.1| DNA primase [Rhodopseudomonas palustris HaA2] gi|86574267|gb|ABD08824.1| DNA primase [Rhodopseudomonas palustris HaA2] Length = 683 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 230/691 (33%), Positives = 359/691 (51%), Gaps = 57/691 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L + +S ++G+ V + ++ PF EKTPSF ND K Sbjct: 1 MRFTPQFLDELKARLLVSEVVGRRVKLKKAGR-----EWKGLSPFQQEKTPSFFVNDEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AG+ LP P ++E+ + L + Sbjct: 56 AWFDFSSGKNGSIFDFIMQTDGVDFPEAVERLAAMAGLALPAATPDAARQEQRRRSLYDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F +L + R YL +RGI F++GYA R++L+EHL + G S Sbjct: 116 MEMAAVYFSENLASRAGARARGYLADRGILPSTQVKFRIGYASPDRFALKEHLGKHGVSV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGLL GD+ +D+FR+R++FPI RG+VIAFGGR L K + KYLNSPET Sbjct: 176 DDMVEAGLLSAGDDIPVPFDKFRDRVMFPITDIRGRVIAFGGRALEKDVAAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + K ++S +I+VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGDNLYNLATARKAAHDAAGKSTPTGAAS-VIVVEGYIDVIAMVTAGFAATVAPLGT 294 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLWK++ +LCFDGD G +AAY+A DL L HL PG + F LL G+DPD Sbjct: 295 ALTENQLQLLWKMADEPILCFDGDRAGQKAAYRAADLALPHLKPGKSLRFALLPEGQDPD 354 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A E++I + PL D+LW RE E SF TP+ RA LE + N I+D+ + Sbjct: 355 DLARAGGRLAIEEVIGAARPLADLLWSREAEGGSFATPERRAALEARINELANGIRDEVV 414 Query: 421 RYYYSQAIRDRLQQLFQKYITEHS-----------------GYGRYWKKNA--------- 454 R YY + +RL+ F R+ + + Sbjct: 415 RRYYRKDWAERLRAAFAPQGGFGGGFGGGFRAGGGARGGADSGRRFQPRGSFPQGGGRYA 474 Query: 455 ------------RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 + R + + SS + S REA +L +L+NHP +L + Sbjct: 475 PFGRQTGLSSPPQGRGPYQVASPDLASSPIMRGQRSALSRREALILQSLLNHPWLLHDHL 534 Query: 503 QELADIRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 +E+A + + + E +L + + + + E++ L + G E L++L+R Sbjct: 535 EEVAALEFAHPEAHRLRAAIIAAFAADHHHGDDPAGQSEKLRADLAKAGLSEQLQRLERA 594 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + +W A +A DV +QQ +AL+++ L R+ ++ E + + + + Sbjct: 595 ITTHAVWGAGPDAAPEDVLSTWQQLVALHRQSHSLLRELKDAELALGE-------DGSEA 647 Query: 617 LISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 ++ L +V ++ ++E EA+IEGFG+ SGR Sbjct: 648 NVAWLRDVKARLSEVEGTEALIEGFGQSSGR 678 >gi|209884281|ref|YP_002288138.1| DNA primase [Oligotropha carboxidovorans OM5] gi|209872477|gb|ACI92273.1| DNA primase [Oligotropha carboxidovorans OM5] Length = 665 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 232/685 (33%), Positives = 351/685 (51%), Gaps = 61/685 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F++DL +P+S ++G+ V R ++ PFH EKTPSF ND KG Sbjct: 1 MRFTPQFLEDLRARLPVSEVVGKRVKLKRAGK-----EWKGLSPFHQEKTPSFTVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS G+ F+ G F+E+V+R+AA+AGV LP V P + E+ + L + Sbjct: 56 FYHDFSSGKHGNIFDFIMETEGVGFVEAVERIAAMAGVALPAVTPDAARHEQRRKTLYEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF +L + R YL +RGI F++GYAP R++L+EHL G S Sbjct: 116 MELAAKFFADTLTSRSGARARGYLADRGISGATQLQFRMGYAPPDRFALKEHLGGLGVSV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +IEA LL GD+ YDRFR+R++FPI R ++IAFGGR + K KYLNS + + Sbjct: 176 DDMIEARLLSAGDDIPVPYDRFRDRVMFPITDQRNRIIAFGGRAMEKDAPAKYLNSADGV 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A ++ + +I+ EGY+DV++L AG V+ LGT Sbjct: 236 LFHKGDNLYNQAMARQAVR----------DGAPVIVAEGYVDVIALVGAGFPGAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+++ VLCFDGD G RAA +A L L HL PG + F ++ G+DPD Sbjct: 286 ALTENQLALLWRMADEPVLCFDGDGAGQRAALRAASLALPHLKPGKSLRFAMMPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A +++ + PL D++W TE F TP+ RA LE L + + I D+ + Sbjct: 346 DLARSGGRAALDEVFAAARPLADVVWAMATEGVDFATPERRAALEARLGDLMREIGDEVV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------------- 455 R YY Q +RL+++F T G + R Sbjct: 406 RRYYRQDFAERLRRMFAPETTGTGGGYGGPRNGFRNESARRFPARNGPGSAMRPGGRGGL 465 Query: 456 --------HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 + S +L S L++G+ S S REA +L +L+NHP +LQ+ +E A Sbjct: 466 STAAFALGRGPYQAMSPQLANSPLIRGQRST-LSRREALILQSLLNHPWLLQDHLEEAAK 524 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEE-----IHQRLCERGFGELLKQLDRQVRDAGL 562 + + + KL + + F + E I L GF + ++ ++ + + Sbjct: 525 LELAHPDSVKLREGIIAAFAQYGATDDSEAERSRIADWLARNGFSKQIQMVESTLTTRNV 584 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 W A A DV + Q +AL+++ L R+ ++ E+ + E T ++ L Sbjct: 585 WGAEAGAAREDVLATWHQLVALHRQSHALLRELKDAEQALG-------HENTEAHVAWLQ 637 Query: 623 EVHIQIHQIESQEAMIEGFGKMSGR 647 +V ++ + EA+IEGFG+ SGR Sbjct: 638 DVKARLAAADGLEALIEGFGESSGR 662 >gi|114704975|ref|ZP_01437883.1| DNA primase [Fulvimarina pelagi HTCC2506] gi|114539760|gb|EAU42880.1| DNA primase [Fulvimarina pelagi HTCC2506] Length = 650 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 253/662 (38%), Positives = 382/662 (57%), Gaps = 32/662 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ D+ +PIS++IGQ V WDRRK+ KGD+WACCPFH EK+PSFHC D KG Sbjct: 1 MRFPPSFLDDIRARVPISDVIGQRVTWDRRKSRPAKGDHWACCPFHGEKSPSFHCEDDKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF ++V+RLA +AG+ +P DP+ E++E+ + ++ Sbjct: 61 RYHCFGCGVSGDHFRFLTELDGMSFPDAVERLAGLAGLQMPARDPEAERREEKRGTILDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +A++FF L++ + YL +RG+ + F LG+AP+ R L+EHL KG + Sbjct: 121 LRLASEFFRERLQDNEGAKARGYLRDRGLTPATQKRFGLGFAPEGRNRLKEHLAGKGVGK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +I AGL++ GD+ S+DRFR+R++FPI + +AFGGR +S KYLNSPET Sbjct: 181 AEIEAAGLVVWGDDIPVSFDRFRDRIMFPILDPSERCVAFGGRAMSPEARAKYLNSPETD 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG LYN A + S+ I+VEGYMDV++L QAG N V+ LGT Sbjct: 241 VFHKGTMLYNLAAARRAAK----------STGTFIVVEGYMDVIALAQAGFDNAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW+ + VLCFDGD GL+AA++A +L L L PG + F LL G+DPD Sbjct: 291 ALTESQIELLWRNAGEPVLCFDGDGAGLKAAHRAAELALPMLKPGRSLRFALLPDGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF +++ ++ PL DM+W RET +F+TP+ RA+LE L I D+ + Sbjct: 351 DLVKGRGPDAFHEVLAQARPLSDMVWSRETAGSTFDTPEARADLEARLNQLTRQIGDESV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYG---------RYWKKNARHRDQKGP------SQR 465 R +Y +R RL F ++ G + ++N R + P S R Sbjct: 411 RRHYQNDMRQRLSAFFGNASSQPRYGGRGERGRYGDQQGRRNTGSRQGQAPGLRPAISDR 470 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L +SSL++ + PSLRE A+++ +NHP ++ E + AD+ + +L +L + + Sbjct: 471 LARSSLLRASGGQAPSLREIAIVVGFVNHPILMHEAFDYFADLEIEAPDLARLRASVLDI 530 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + E E I L G + + +++ R+ LW +A D R+ +QAL L Sbjct: 531 YAESAPDSREVIVAGLERAGTDTIFETYEKKAREVRLWPVLADAAADDAREALRQALNLQ 590 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 RF+ L+R+ + E+ + + E T + V +I ++E+ EA+I+GFG +S Sbjct: 591 HRFKALTRELRQAERLLGE-------EPTEEAYEHMRAVKAEIERLETVEALIDGFGILS 643 Query: 646 GR 647 GR Sbjct: 644 GR 645 >gi|296445788|ref|ZP_06887741.1| DNA primase [Methylosinus trichosporium OB3b] gi|296256768|gb|EFH03842.1| DNA primase [Methylosinus trichosporium OB3b] Length = 643 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 231/662 (34%), Positives = 339/662 (51%), Gaps = 39/662 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP F+ ++ +P+S ++ Q V ++ ++ PF+ EKTPSF+ ND KG Sbjct: 1 MRYPPSFLDEIRARVPVSAVVSQKVKLKKQGR-----EWRGLSPFNAEKTPSFYVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS GD +FL G +F E+V++LA +AG+P+PV + + E + L + Sbjct: 56 FYHDFSSGKNGDGFTFLMETEGLTFPEAVEKLAGMAGLPMPVETTEAREAEAKRASLGDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L+ YL R I F+LG+AP+ R+ LR+HL KG S Sbjct: 116 LEWAALYFEAQLRGPAGGAARAYLAGRSIGETDRARFRLGFAPNERHGLRDHLAGKGASV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IEAGLL+ G++ YDRFR+R++FPI G+VIAFGGR + K KY+NSPET Sbjct: 176 EAMIEAGLLVHGEDIVVPYDRFRDRIMFPILDRAGRVIAFGGRAMQKDAQAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + +I VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGATLYNHHNARKAAH----------EAGTVIAVEGYVDVIAMTAAGFAQTVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q LLW ++ +LCFDGD G +AA +AID L L PG F LL G+DPD Sbjct: 286 ALTAEQCNLLWTMAEEPILCFDGDKAGRKAADRAIDTALPLLGPGRSFRFALLPDGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G A + I + PLVD+LW RETE +TP+ RA LE +I D+ L Sbjct: 346 ELFRAGGPAAIAEAIGAARPLVDLLWARETEGARLDTPERRAALERRFAELARNIADEAL 405 Query: 421 RYYYSQAIRDRLQQLFQKYIT---------------EHSGYGRYWKKNARHRDQKGPSQR 465 R +YSQ + DR LF + + R Sbjct: 406 RRHYSQELIDRCATLFGRSRNYPPRREQRSGGGGGGRGPMRRFGGNEQPSLRGPVTIGAS 465 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L +S L +G+ + REA +LL L+NHP +L E+ +E+A + + + E ++L + LF Sbjct: 466 LARSPLFRGE-GAAIAPREALILLILLNHPQLLLERLEEIAALDFASAEARELLAALFRA 524 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + E + + + G +L A LW+ A D + +QAL L Sbjct: 525 -ADDGAPDEESVAREIAAAGLEAFCARLAGMGAHASLWNVRRGAATTDAAESLRQALVLQ 583 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 R R L ++ +IE+++A + + + L ++ Q++ IE EAM++GFG +S Sbjct: 584 HRVRALHKELRKIEQRLADAPSDHD-------FARLSDIQAQLNAIEGTEAMLDGFGSLS 636 Query: 646 GR 647 GR Sbjct: 637 GR 638 >gi|323137009|ref|ZP_08072089.1| DNA primase [Methylocystis sp. ATCC 49242] gi|322397770|gb|EFY00292.1| DNA primase [Methylocystis sp. ATCC 49242] Length = 641 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 231/659 (35%), Positives = 355/659 (53%), Gaps = 35/659 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +P+S ++ + V R+ ++ PF+ EKTPSF+ ND KG Sbjct: 1 MRFSPSFLDEIRARVPVSEVVRRKVKLTRQGR-----EWRGLSPFNAEKTPSFYVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++ FS GD +FL G SF E+V+RLA +AG+P+PV P+ ++++ + L Sbjct: 56 FFHDFSSGKHGDGFTFLMETEGLSFPEAVERLAGLAGLPMPVETPEQREQDERRATLGDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L + YLD R I + + F+LG+AP R++LR+HL +G + Sbjct: 116 LEWAAGFFEKQLAGPAGREARAYLDRRQISARSRAQFRLGFAPAERHALRDHLAARGATV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IEAGLLI G++ A YDRFRNR++FPI G+VIAFGGR + KYLNSPET Sbjct: 176 ETMIEAGLLIHGEDIAVPYDRFRNRVMFPICDRSGRVIAFGGRAMEADAQAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A S ++ VEGY+DV++L AG +VV+ LGT Sbjct: 236 LFHKGATLYNLHNARKAAH----------ESGTVVAVEGYIDVIALTAAGFPHVVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q LLW+++ +LCFDGD GL+AA++A+D L + PG + FVLL G+DPD Sbjct: 286 ALTPEQCGLLWRMAEEPILCFDGDKAGLKAAFRAVDTALPLVGPGRTLRFVLLPDGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A + + + LPLVD+LW RETE + +TP+ RA LE L+ I D+ L Sbjct: 346 ELLRAGGPSAVAQALGQPLPLVDLLWMRETEGVALDTPERRAGLERRLREVAGQITDETL 405 Query: 421 RYYYSQAIRDRLQQLFQK------------YITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 R +Y Q + +RL +LF + + S R W + + Sbjct: 406 RRHYQQELSERLDRLFGRGAARFTGRRPDASPRDFSARRRQWGGRGEPAGGSVRIGQSLA 465 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 +S + + + RE +LL L+NHP +L Q ++A + + + E + L + E Sbjct: 466 NSPLFRGVKATITPREGLILLILMNHPEVLAAQVDDIAALDFASPEAAAMRDALV-HWAE 524 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 E+ + L E GF L ++ V A +WS +A D + +QAL L++R Sbjct: 525 AGGGDRLELRRSLEESGFANLAARIAGMVAHATIWSVRPDAAPADAAESLRQALVLHRRS 584 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 L+++ +E ++A+ ++ + L ++ Q+ ++ EA +EGFG +SGR Sbjct: 585 CALNKELRAVEARLAENPNDQDS-------ARLRDIQTQLTALDGAEAALEGFGTLSGR 636 >gi|115523079|ref|YP_779990.1| DNA primase [Rhodopseudomonas palustris BisA53] gi|115517026|gb|ABJ05010.1| DNA primase [Rhodopseudomonas palustris BisA53] Length = 688 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 228/688 (33%), Positives = 351/688 (51%), Gaps = 63/688 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ DL + +S+++G+ V + ++ PF EKTPSF ND K Sbjct: 20 MRFTPQFLDDLKARLMVSDVVGRRVKLKKSGR-----EWKGLSPFQQEKTPSFFVNDEKQ 74 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ FS G F+ G F E+V+RLAA+AG+ LP P ++E+ + L + Sbjct: 75 AWFDFSSGKNGSIFDFVMQTEGVDFPEAVERLAALAGMALPQATPDAARQERHRKSLYEV 134 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF +L R YL +R I F+LG+AP R++L+EHL + G Sbjct: 135 MELAAAFFTETLAARGGARARGYLADRAIAPATQVKFRLGFAPADRFALKEHLGKHGIPV 194 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGLLI GD+ YDRFR+R++FPI RG+VIAFGGR + K KYLNSPET Sbjct: 195 SDMVEAGLLIAGDDIPVPYDRFRDRVMFPITDIRGRVIAFGGRAMEKDVPAKYLNSPETP 254 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG NLYN A + +++VEGY+DV+++ G V+ LGT Sbjct: 255 LFHKGDNLYNLASARGAAH----------QGASLVVVEGYVDVIAMSAVGYAATVAPLGT 304 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL+LLWK++ +LCFDGD G +AA++A DL L +L PG + F LL G+DPD Sbjct: 305 ALTENQLQLLWKMADEPILCFDGDKAGQKAAWRAADLALPYLAPGKSLRFALLPEGQDPD 364 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G+ A +++I + PL D+LW RE SF TP+ RA LE + N I+D+ + Sbjct: 365 DLAKLGGRAAVDEVIGAARPLADVLWSREHGAGSFATPERRAALEARINELTNGIRDEVV 424 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR----------------------- 457 R YY Q + +RL+Q F ++ Sbjct: 425 RRYYRQDLGERLRQAFAPQGGFGGNRNFQGRRGDSPGGFVPRGPFQPGGGRPQPRGGRNA 484 Query: 458 -----------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 + S L S +++G+ S S REA +L TLINHP +L ++ +++A Sbjct: 485 GAMTGIALSRLPYQVASPELAASPIMRGQRSA-ISRREALILQTLINHPWLLHDRLEQVA 543 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEE------IHQRLCERGFGELLKQLDRQVRDA 560 + + E +L + + + F + + + L G E L++++R + Sbjct: 544 ALELAHPEAHRLRAAIIAAFANDHHHADDAAEQSGRLRADLEAMGLTEQLQRVERSITTK 603 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +W A A DV +QQ +AL++++ L R+ ++ E + E + + Sbjct: 604 DVWGAQPGAAAEDVLSTWQQLVALHRQWHSLLRELKDAELALGD-------EPSDANFAW 656 Query: 621 LHEVHIQIHQIESQEAMIEGFGKMSGRL 648 L +V ++ +++ EA+IEGFG SGRL Sbjct: 657 LRDVKARLAEVDGIEALIEGFGASSGRL 684 >gi|182680200|ref|YP_001834346.1| DNA primase [Beijerinckia indica subsp. indica ATCC 9039] gi|182636083|gb|ACB96857.1| DNA primase [Beijerinckia indica subsp. indica ATCC 9039] Length = 665 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 235/682 (34%), Positives = 349/682 (51%), Gaps = 57/682 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F++++ +P+S ++ + V + ++ PF+ E+TPSF ND KG Sbjct: 1 MRFPTSFLEEIKHRLPMSEVVRRRVKLQKAGR-----EWKGLSPFNQERTPSFTVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CFS G+ FL G SF E+V+RLA AG+ LP V + E++EK + L + Sbjct: 56 FFHCFSSGQHGNIFDFLMLTEGLSFPEAVERLANDAGLALPRVSAESEEREKQRAGLHEI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF +L++ YL +RG+ F+LG++P +Y+LR+HL KG + Sbjct: 116 LEWAALFFEKALQSPAGANARTYLAQRGLSPDLQTRFRLGFSPPEKYALRDHLAGKGATR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IEAGLL+ G A YDRFR R++FPI G+VIAFGGR LSK + KYLNSPET Sbjct: 176 EAMIEAGLLVHGPEIAVPYDRFRERIMFPIADRSGRVIAFGGRALSKDVAAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + +I VEGY+DV+++ AG +VV+ LGT Sbjct: 236 LFHKGAGLYNLHQARKPAH----------EAGTVIAVEGYVDVIAMTAAGFPHVVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q LLW+++ +LCFDGD G +AAY+A D+ L L P + + F LL G+DPD Sbjct: 286 ALTRDQCALLWRMAEEPILCFDGDRAGRKAAYRAADVALPLLGPSHSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 R G+ A E ++ ++LPLVD++W RETE F TP+ RA LE L++ IKD L Sbjct: 346 DLARSGGRMAIEGVLEKALPLVDLVWMRETEAGGFTTPERRAALEQRLEDLARGIKDPTL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITE----------------------HSGYGRYWKKNARHRD 458 + YY +RL LF R +++R + Sbjct: 406 QRYYRGEFANRLAALFGPLAAPASDRRDPSRPFGARSSFPRSPFQGRGARNDNRSSRFQS 465 Query: 459 QKGPSQRLMQSSLVKGKL---------SKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + + SSL + +L + P REA +LL L+ HP ++ + LA + Sbjct: 466 PDFKAPLQISSSLARSRLLQTARSDAANDLPPSREALILLLLLRHPGLIDRHVEALAALD 525 Query: 510 YDNNELQKLWSFLFSDF----VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + N E L S L + E + RL G G LL++L+ + A W Sbjct: 526 FVNTEASALRSLLLEAAWHDGADDLPPSHEALLDRLTAEGKGALLQKLESVIPVASHWYL 585 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 +A +D +QA+ L++R L R+ + + +A+ T + L ++ Sbjct: 586 QPDAADIDAEALLEQAITLHQRAGALHRELQLAKAALAEDTNETN-------FDRLKDIQ 638 Query: 626 IQIHQIESQEAMIEGFGKMSGR 647 Q+ + EA +EGFG SGR Sbjct: 639 AQLQALGGTEAAVEGFGFSSGR 660 >gi|163868738|ref|YP_001609952.1| DNA primase [Bartonella tribocorum CIP 105476] gi|161018399|emb|CAK01957.1| DNA primase [Bartonella tribocorum CIP 105476] Length = 645 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 259/643 (40%), Positives = 383/643 (59%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P DF+ +L +PIS +IGQ VD+D RK+ +GD+W CCPFH EKTPSFHC+D KG Sbjct: 1 MRFPPDFLNELRSRLPISTVIGQRVDFDMRKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C V GD +FL L G F ESV+RLA AG+ LP+ DP+ +++ + DL + Sbjct: 61 RYYCFGCGVSGDIFTFLCELDGLHFSESVERLADFAGMKLPIEDPQNHQRQMEKADLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF + L++ + YL+ERG+ IE F++G+AP R +L+E L +G S Sbjct: 121 MKIATDFFQYHLRDKGGAQARRYLEERGVTQKLIERFRIGFAPVKRTALKEALSTRGISI 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ E GLL + S SYDRFRNR++FPI RG+V+AFGGR L K KYLNSPET+ Sbjct: 181 KQMEECGLLTVHEESVDSYDRFRNRIMFPIEDLRGRVVAFGGRALEKETRAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + V +++VEGYMDV++L + G + VV+ LGT Sbjct: 241 LFHKGNILYNAAAARKNSR-----FVGDEKIHSLLVVEGYMDVIALTKVGFEGVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ +LCFDGDD GL+AA++ D VL L G V FVLL +G+DPD Sbjct: 296 ALTEAQIELLWQMGKEPILCFDGDDAGLKAAFRVADRVLPLLKVGVCVRFVLLPQGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F + +++PL+++LW R T + F TP+ RA LE LK I IKD+ + Sbjct: 356 EIVCAGGAQLFSSFLQKAIPLIELLWWRATYGKQFETPEARAALEKQLKQQIFMIKDEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q ++ RL F+ ++ G GRY + + +R K S L+ +S + S+ Sbjct: 416 RRYYLQDVKKRLFDFFRPPFSKKKGGGRYGQ-TSPNRIFKDQSFSLLANSEIVRNSSQAI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LLTL +P + E ++ L+++ N +L + EQ E + Sbjct: 475 PLREAVILLTLAYYPELWHENFEILSELELKNTQLICFHQTMLEILGEQTLHDKETMVAF 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L +RG LL+++ VR+ G+ A+I D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEKRGQKALLERMKHLVRNIGMRIIFGGASIEDARAILKQAVYLHLQEHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 Q+ + + +L E+ ++ Q+++ EA+IEGFG Sbjct: 595 QLVENPKS-------EVFDLLREIKNELEQMQATEALIEGFGS 630 >gi|240850914|ref|YP_002972314.1| DNA primase [Bartonella grahamii as4aup] gi|240268037|gb|ACS51625.1| DNA primase [Bartonella grahamii as4aup] Length = 645 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 256/643 (39%), Positives = 385/643 (59%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P DF+ +L +PIS +IGQ VD+D RK+ +GD+W CCPFH EKTPSFHC+D KG Sbjct: 1 MRFPPDFLNELRTRLPISTVIGQRVDFDPRKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C V GD +FL L G F ESV+RLA AG+ LP++D + K++ + +L + Sbjct: 61 RYYCFGCGVSGDIFTFLCELDGLHFSESVERLADFAGMKLPILDSQSHKRQLEKAELYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF ++L++ + YLD RG+ +E F++G+AP R +L+E L +G S Sbjct: 121 MKIATDFFQYNLRDKGGVQARRYLDARGVTPELVERFRIGFAPVRRTALKEALSARGISI 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ E GLL + SA SYDRFRNR++FPI RG+V+AFGGR L K KYLNSPET+ Sbjct: 181 KQMEECGLLTVREGSADSYDRFRNRIMFPIEDLRGRVVAFGGRALEKETRAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + V + +++VEGYMDV++L +AG + VV+ LGT Sbjct: 241 LFHKGNILYNAVAARKNSR-----FVGDEKNHSLLVVEGYMDVIALTKAGFEGVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ +LCFDGDD GL AA++ D VL L G V FVLL +G+DPD Sbjct: 296 ALTEAQIELLWQMGKEPILCFDGDDAGLNAAFRVADRVLPLLKAGVCVRFVLLPQGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F + +++PL ++LW R T + F TP+ RA LE LK I IKD+ + Sbjct: 356 EIVCAGGAQLFSSFLQKAIPLSELLWWRATYGKHFETPETRAALEKQLKQQIFTIKDEDV 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q ++ RL F+ ++ G GR + +++ +R K S L+ +S + S+ Sbjct: 416 RRYYLQDVKKRLFDFFRPSFSKKKGEGR-YDQSSSNRIFKDQSFSLLANSEIVRNSSQSI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LLTL +P + E ++ L+++ N +L + Q+ E + Sbjct: 475 PLREAVILLTLAYYPELWYENFEILSELELKNTQLMCFHQAMLEILGNQQLHDKETMIAL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L +RG LL+++ V++ G+ A+I D R +QA+ L+ + L ++ ++I++ Sbjct: 535 LEKRGQKALLERMKHLVQNIGMRIIFGRASIEDARAILKQAVYLHLQEHHLHKRLQDIKE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 Q+ + + +L EV ++ Q+++ EA+IEGFG Sbjct: 595 QLVENPKS-------EVFDLLREVKNELEQMQATEALIEGFGS 630 >gi|49474477|ref|YP_032519.1| DNA primase [Bartonella quintana str. Toulouse] gi|49239981|emb|CAF26394.1| DNA primase [Bartonella quintana str. Toulouse] Length = 642 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 254/646 (39%), Positives = 378/646 (58%), Gaps = 13/646 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P DF+ ++ +PIS +IGQ V +D +K+ +GD+W CCPFH EKTPSFHC+D KG Sbjct: 1 MRFPSDFLDEIRTRLPISTVIGQRVVFDPQKSKPSRGDFWCCCPFHGEKTPSFHCDDHKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C V GD +FL L G F ESV+RLA AG+ LPV DP+ K++ + DL + Sbjct: 61 RYYCFGCGVSGDIFTFLCELDGLRFSESVERLADFAGMKLPVSDPQSHKRQMEKADLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A DFF +SL + + YLDERG+ E F++G+AP R +L+E L +G S Sbjct: 121 MKIAMDFFQYSLHDKGGAQARRYLDERGVTPKLAERFRIGFAPIRRTALKEALSARGISI 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLL ++ TSYDRFRNR++FPI RG+V+AFGGR L K KYLNS ET+ Sbjct: 181 KQMEDCGLLKVNEDGTTSYDRFRNRIMFPIEDLRGRVVAFGGRALEKDTQAKYLNSSETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + V + +++VEGYMDV++L +AG + VV+ LGT Sbjct: 241 LFHKGNMLYNAAAARKNSR-----LVGDKKNHSLLVVEGYMDVITLTKAGFERVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ + CFDGD+ GL+AA++ + VL L G V FVLL +G+DPD Sbjct: 296 ALTEAQIALLWQIGSDPIFCFDGDEAGLKAAFRVAERVLPLLKVGVSVRFVLLPQGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I G F + +S+ L+++LW R T + F TP+ RA LE LK I I D + Sbjct: 356 EIICAGGAQLFASFLQKSISLIELLWWRATYGKDFETPEARAALEKQLKQQIFTINDADI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F+ + + G+ + +N ++R K S ++ +S + S Sbjct: 416 RRYYFQDIKKRLFDFFRPFFLKKKDAGQ-YDQNPKNRIFKDQSFSMLANSNIIRDSSHSV 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E ++ LA + N +L L + Q+ E + Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAALELQNTQLVSLHQSMLEVLGSQQLHNKETMIAF 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ERG LL+++ V++ G+ + A I D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEERGQKTLLERMKNLVQNVGMRTVFAGAPIEDARAVLKQAIYLHLQEYHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 Q+ + + ++L E+ I++ Q ++ EA+IEGFG G Sbjct: 595 QLVENPN-------NEIFNLLREIKIELEQTQATEALIEGFGSGFG 633 >gi|319408881|emb|CBI82538.1| DNA primase [Bartonella schoenbuchensis R1] Length = 645 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 256/642 (39%), Positives = 375/642 (58%), Gaps = 13/642 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P DFI ++ +PIS +I Q V +D +K+ +GD+W CCPFH EKTPSFHCND KG Sbjct: 1 MRFPPDFIDEIRSRLPISTVINQRVTFDPQKSKPARGDFWFCCPFHGEKTPSFHCNDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C V G+ +FL L G F+E+V+RLA +AG+ LPV+DP+ ++E + L + Sbjct: 61 CYYCFGCGVSGNIFTFLCELDGLQFLEAVERLADLAGMKLPVLDPQSYEREMQKASLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +ATDFF SL N ++ YYL ERG+ I+ F++G+AP R +L+E L +G S Sbjct: 121 MGMATDFFQCSLHNKEGEQARYYLGERGVTPELIKRFRIGFAPTKRTALKEALSMRGISV 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLL+ G++ YDRFRNR+IFPI RG+V+AFGGR L K KYLNSPET+ Sbjct: 181 KQMEDCGLLVSGEDVTVPYDRFRNRIIFPIEDLRGRVVAFGGRGLDKNVRAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + + I++VEGYMDV++L +AG + VV+ LGT Sbjct: 241 LFHKGNMLYNAASARKSNH-----SIEEKKARSILVVEGYMDVIALTKAGFEKVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ P V CFDGDD GL+AA++ D VL L G V+F+LL +GEDPD Sbjct: 296 ALTEEQIALLWQIEPDCVFCFDGDDAGLKAAFRVADRVLPLLRVGVSVHFILLPQGEDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G F + +S+PL+++LW R T + F TP+ RA LE LK + IKD+ + Sbjct: 356 EIIRAGGAPLFNSFLQKSIPLIELLWWRATYGQRFETPETRAALERRLKQEVFTIKDEDV 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F + Y K + L S++V+ L Sbjct: 416 RRYYFQDIKKRLFDFFSPSFLQKKNTAGYGKNQKNEIFKGQSFSSLENSNMVR-NLPHSI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L ++P + E ++ L+ + N EL + Q+ + + Sbjct: 475 PLREAVILLILAHYPDLWYENFEVLSKLELKNTELTNFHQSMLEILGSQQIHDKAVMIEL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E+G +L+++ V+ G+ + T+A I D R +QA+ L+ R L ++ ++IE+ Sbjct: 535 LEEKGQKAILERMRNLVQSVGMRTTFTKAPIEDARAVLKQAIYLHLREHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 Q+ + + +L E ++ Q+ + EA+IEGFG Sbjct: 595 QLMENPN-------NEVFDLLRETKTELEQMRATEALIEGFG 629 >gi|319898527|ref|YP_004158620.1| DNA primase [Bartonella clarridgeiae 73] gi|319402491|emb|CBI76034.1| DNA primase [Bartonella clarridgeiae 73] Length = 642 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 250/643 (38%), Positives = 371/643 (57%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P DF+ ++ +PIS +IGQ V +D +K+ +GD+W CCPFH EKTPSFHC+D +G Sbjct: 1 MRIPPDFLDEIRARLPISTVIGQRVTFDPKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C+ GD +FL L G F ESV+RLA AG+ LPV D + K E + DL + Sbjct: 61 RYYCFGCNTSGDIFTFLCELDGLRFSESVERLAGFAGMKLPVFDLQNHKGEIKKNDLYDI 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A DFF ++L + + +YL RG+ + F++G+AP R +L++ L +G S Sbjct: 121 MKIAADFFQNNLHHQIGTQARHYLGARGVTLELAKRFQIGFAPVGRTALKDALSARGISL 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLLI G++ A YDRFRNR+IFPI+ RG+V+AFGGR+L K KYLNSPET+ Sbjct: 181 KQMEDCGLLISGEDIAIPYDRFRNRIIFPIKDLRGRVVAFGGRSLDKNAQAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + + + I++VEGYMDV++L + G + VV+ LGT Sbjct: 241 LFHKGNTLYNAASARKNSR-----SSVKGEAHSILVVEGYMDVIALTKVGFEKVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ P +LCFDGDD GL+AA++ D VL L G V FVLL G+DPD Sbjct: 296 ALTETQIGLLWQMEPNPILCFDGDDAGLKAAFRVADRVLPLLKAGMSVRFVLLPNGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G F + +S+PL+++LW R T + F TP+ RA LE LK I+ IKDQ + Sbjct: 356 EIIRAGGAHLFSSFVQKSIPLIELLWWRATFGKHFTTPEARAALERELKQQISTIKDQDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F+ + +Y + + L S++V+ + Sbjct: 416 RRYYFQDIKRRLFDFFRSSFLKQKNEEKYVQDQKDGMFKDQSFSALANSNIVRSSKN-FI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E ++ LA + N++L L + Q+ E + Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAKLELKNDQLISLHQSMLEILGNQELCDKETMAVF 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ++G +L+ +D V+ G+ A I D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEKKGQKAILEYIDSLVQKVGMRITFGGAPIEDARTVLKQAIYLHLQEHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 Q+ + +L E ++ Q ++ EA+IEGFG Sbjct: 595 QLI-------KNPRDEVFDLLRETKAELEQTQATEALIEGFGS 630 >gi|49475879|ref|YP_033920.1| DNA primase [Bartonella henselae str. Houston-1] gi|49238687|emb|CAF27937.1| DNA primase [Bartonella henselae str. Houston-1] Length = 645 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 255/643 (39%), Positives = 377/643 (58%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + DF+ +L +PIS +IGQ V +D +K+ +GD+W+CCPFH EKTPSFHC+D KG Sbjct: 1 MRFSPDFLDELRTRLPISTVIGQRVTFDPQKSKPSRGDFWSCCPFHGEKTPSFHCDDHKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C V GD +FL L G F ESV RLA AG+ LP+ DP+ K + + DL + Sbjct: 61 RYYCFGCGVSGDIFTFLCELDGLHFSESVVRLADFAGMKLPLFDPQSHKSQMGKADLYNV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF +SL++ + YLD RG+ E F++G+AP R +L+E L +G S Sbjct: 121 MKIATDFFQYSLRDKAGVQARRYLDARGVTPKLAERFRIGFAPTRRTALKEALNARGISI 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ E GL+ G++ TS DRFRNR++FPI RG+V+AFGGR L K KYLNSPET+ Sbjct: 181 KQMEECGLIKMGEDGTTSSDRFRNRIMFPIEDLRGRVVAFGGRALEKDIRAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + V + +++VEGYMDV++L +AG + V+ LGT Sbjct: 241 LFHKGDMLYNAASARKNSR-----LVGDEKNHALLVVEGYMDVITLTKAGFEGAVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ +LCFDGDD GL+AA++ D VL L G V FVLL +G+DPD Sbjct: 296 ALTEAQIALLWQIGTDPILCFDGDDAGLKAAFRVADRVLPLLKAGVSVRFVLLPQGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I G F + +S+PL+++LW R T ++F P+ RA LE LK I IKD+ + Sbjct: 356 EIICAGGAELFTSFLQKSIPLIELLWWRATYGKNFEIPEARAALEKQLKQQIFTIKDEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F+ + GR ++ ++ +R K S ++ +S + S Sbjct: 416 RRYYLQDIKKRLFDFFRPSFSNKKFTGRSYQ-SSPNRILKDQSFSVLANSNIVRNSSHSI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E ++ LA++ N +L + + Q+ E + Sbjct: 475 PLREAVILLILAYYPELWYENFEVLAELELQNTQLVRFHQSMLEILGNQQLHDKETMIAL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ERG LL+ + V+ G+ + A I D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEERGLKVLLELMKNLVKKIGMRTIFYGAPIEDARAILKQAIYLHLQEYHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 Q+ + + +L E I++ Q+++ EA+IEGFG Sbjct: 595 QLVENPKS-------EVFDLLCETKIELEQMQATEALIEGFGS 630 >gi|170747006|ref|YP_001753266.1| DNA primase [Methylobacterium radiotolerans JCM 2831] gi|170653528|gb|ACB22583.1| DNA primase [Methylobacterium radiotolerans JCM 2831] Length = 629 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 212/638 (33%), Positives = 333/638 (52%), Gaps = 24/638 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S+++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRSRLPASSVVGRRVQLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD +FL G SF E+V+RLA AGV LP E+ + I + Sbjct: 56 FYHCFSSSKHGDIFTFLMETEGLSFPEAVERLAGEAGVSLPAPTEDNRASEQKRAGAIEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L++ + YL+ RG+ F+LGYAP+ RY+LR+HL +G + Sbjct: 116 MEMAARWFEERLRSGQGSEARAYLERRGLRDETQRAFRLGYAPNDRYALRDHLAGQGVEK 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++E GLL G+ + YD FR+R++FPI +RG+V+AFGGR L+K KYLNSPET Sbjct: 176 ALMVELGLLAAGEGVSVPYDYFRDRVMFPITDTRGRVVAFGGRALAKEVRAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN GA II VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRTLYNLHGARKVAH----------ERGSIIAVEGYVDVIAMTLAGHPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAAY+A+D+ L L PG + LL G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDKAGQRAAYRALDIALPLLEPGRSLRIALLPGGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G TA ++++ +LPL ++LW+R E +TP+ RA L L+ + I+D+ + Sbjct: 346 DLLRSGGPTAIDQVLTAALPLSELLWRRALEAGPVDTPERRAGLTQTLRTTVATIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSK 478 R YY I +RL+ L + R ++ R + P + S + Sbjct: 406 RRYYRDDIEERLRGLSPRGNRAAGAAPRGRQRFTRPGEPVSPRITGSPSPSVTASAGFTG 465 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 S+REA ++ TL+ HP ++ E +E A++ +++ + + L S L + E ++ PE + Sbjct: 466 AASVREAVIVGTLLAHPEMMAEFGEEAAELDFEDPDARALLSVLLACAAEDEHAAPEVLQ 525 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R+ G ++ R + A+ +QA+ L+++ L Sbjct: 526 NRINRAGLTGAADRILALARSRDRTTLAPHADPAHRADALRQAMILHRQAGALH------ 579 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ + E + T + L EV ++ + + EA Sbjct: 580 -SELREARQAFEDDPTDAGWAWLCEVKARLETVIAAEA 616 >gi|121602151|ref|YP_989246.1| DNA primase [Bartonella bacilliformis KC583] gi|120614328|gb|ABM44929.1| DNA primase [Bartonella bacilliformis KC583] Length = 646 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 257/642 (40%), Positives = 379/642 (59%), Gaps = 13/642 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P DF+ ++ +PIS +IGQ V +D RK+ + +GD+W CCPFH EKTPSFHC+D KG Sbjct: 2 MRFPPDFLDEIRTRLPISTVIGQRVTFDPRKSKSSRGDFWCCCPFHGEKTPSFHCDDRKG 61 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +Y+CF C V GD +FL L G F ESV+RLA +AG+ LPV+D + K+E + DL + Sbjct: 62 YYHCFGCGVSGDIFNFLCELDGLQFSESVERLADLAGMKLPVLDLQSYKREMQKADLYDV 121 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +ATDFF ++L + + YLDERGI + F++G+AP R +L+E L +G S Sbjct: 122 MAIATDFFQNNLYDKGGAQARQYLDERGITPELAKRFRIGFAPAKRTALKEVLSARGVSV 181 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLLI G++ A YDRFRNR+IFPI+ RG+V+AFGGRTL + KYLNSPET+ Sbjct: 182 KQMEDCGLLISGEDIAVPYDRFRNRIIFPIQDLRGRVVAFGGRTLDQDVQAKYLNSPETV 241 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + I++VEGY+DV+SL +AG + VV+ LGT Sbjct: 242 LFHKGNILYNAASARKNN-----SFTSGEKAPSILVVEGYIDVISLIKAGFEKVVAPLGT 296 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLWK+S +LCFDGDD GL+AA++ D VL L G V F+LL +G+DPD Sbjct: 297 ALTEAQIELLWKMSSDPILCFDGDDAGLKAAFRVADRVLPLLKAGLSVRFILLPQGQDPD 356 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G F+ + +S+PL+++LW R T + F TP+ERA LE LK I IKD+ + Sbjct: 357 EIVRVGGAKFFDSYVQKSIPLIELLWLRATYGKRFETPEERAALERELKQEIFKIKDESV 416 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F+ ++ Y + Q L S +V+ P Sbjct: 417 RRYYLQDIKKRLFDFFRSSFSKKKSTEGYSENQKNGIFQGKIFSALENSDMVRTSSHSIP 476 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L ++P + E ++ LA++ N +L + Q E + Sbjct: 477 -LREAVILLVLAHYPDLWHENFEVLAELELKNTQLMNFHQSMLEILGSQCLLAEETMIIA 535 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ++G +L+ + V+ G+ + A I D R +QA+ L+ + L ++ ++IE+ Sbjct: 536 LEKKGQKIILEHMMNLVQKVGMRTFFARAPIEDARSVLKQAIYLHLQEHHLHKRLQDIEE 595 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 Q+ ++ + +L E +++ Q + EA+IEGFG Sbjct: 596 QLL-------NNPSSEIFDLLRETKVELEQTHATEALIEGFG 630 >gi|217977789|ref|YP_002361936.1| DNA primase [Methylocella silvestris BL2] gi|217503165|gb|ACK50574.1| DNA primase [Methylocella silvestris BL2] Length = 647 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 230/665 (34%), Positives = 338/665 (50%), Gaps = 41/665 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ D+ +P+S ++ + V R ++ PF+ EKTPSF ND K Sbjct: 1 MRFSPSFLDDVKARLPVSEVVRRRVKLIRAGR-----EWKGLSPFNTEKTPSFFVNDQKM 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++ S G+ F+ G SF E+V+RLAA AGVPLP P+ E +E+ + L Sbjct: 56 AWFDLSAGKNGNIFDFVMETEGLSFREAVERLAAEAGVPLPQASPEAEAQEQKRAGLHET 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +A DFF L + YL R + + A + F++GYAP +++LR+HL KG + Sbjct: 116 LGLAADFFCAQLAGPSGGKARDYLTGRALSAEAQKNFRIGYAPADKFALRDHLAGKGVAR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +IEAGLLI G++ A YDRFR+R+IFPI G+ IAFGGR LS KYLNSPET Sbjct: 176 DTMIEAGLLIHGEDIAVPYDRFRDRIIFPICDRSGRPIAFGGRALSAEAQPKYLNSPETT 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A SS II+VEGY+DV++L +AG V+ LGT Sbjct: 236 LFHKGGVLFNHHRARTAAH----------SSDRIIVVEGYVDVIALSEAGFAETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q LLW+++ +LCFDGD G +AAY+AID+ L + G + F LL G+DPD Sbjct: 286 ALTPDQAELLWQMTAEPILCFDGDKAGRKAAYRAIDMALPLIGAGRSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A ++ ++LPL D++W+RETE F+TP+ RA E L I+D+ L Sbjct: 346 DLIRSAGPHAMADVLSQALPLADLIWRRETEGADFSTPERRAGFERRLDEIAQEIRDETL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------------GP 462 R YY R R Q LF + R + A+ + Sbjct: 406 RRYYRDEFRQRRQSLFAPQRSTVKAPWREGSRPAQGARRGFGPGRDGFQTADAAPVRLTA 465 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S L S+L+ + REA +LL LI+HP ++++ +++ADI + + L L Sbjct: 466 SPSLAGSALMMRSGASGLPPREALILLILISHPGLIEQHLEDIADIEFSGRDAGVLRDRL 525 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 P E GFG +L +LD A W A D + +QAL Sbjct: 526 IDKVSSAP-LDPAGARAFAQEEGFGAVLARLDAFAAHASHWYMKENAAEADADEVLKQAL 584 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 L+ + R L++ ++ + + T + ++ L + ++ + EA +EGFG Sbjct: 585 TLHHKERGLNKDLRAAQQAFER-------DMTDVNLARLKAIREDLNALGGTEATVEGFG 637 Query: 643 KMSGR 647 +SGR Sbjct: 638 ALSGR 642 >gi|319403850|emb|CBI77436.1| DNA primase [Bartonella rochalimae ATCC BAA-1498] Length = 642 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 243/643 (37%), Positives = 369/643 (57%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P DF+ ++ +PIS +IGQ V +D++K+ +GD+W CCPFH EKTPSFHC+D +G Sbjct: 1 MRIPPDFLDEIRARLPISVVIGQRVIFDQKKSKPSRGDFWCCCPFHGEKTPSFHCDDRRG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C+ GD +FL L G F ESV+RLA AG+ LP D + K E + DL + Sbjct: 61 RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPAFDLQNHKDEMKKNDLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF ++L + + +YLDERG+ + F++G+AP R +L++ L +G S Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLDERGVTLELAKRFQIGFAPIGRTTLKDALSARGISL 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLLI G++ +T YDRFRNR+IFPI RG+V+AFGGR+L K KYLNSPET+ Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIEDLRGRVVAFGGRSLDKNARAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN + + + +++VEGYMDV++L + G + VV+ LGT Sbjct: 241 LFHKGNMLYNAASVRKNSR-----ASEKKEACSVLVVEGYMDVIALTKVGFEKVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ +LCFDGD+ GL+AA++ D VL L G V FVLL G+DPD Sbjct: 296 ALTETQIELLWQMESDPILCFDGDNAGLKAAFRVADRVLPLLKAGKSVRFVLLPNGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR F + +++PL+++LW R T + F TP+ RA LE LK I IKD+ + Sbjct: 356 EIIRTGDAHLFSSFVQKAIPLIELLWWRATSGKHFTTPEARAALERELKQQIATIKDKDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 YY Q I+ RL F+ + + G Y + + L S++V+ Sbjct: 416 HRYYFQDIKRRLFAFFRSSLLKQKKQGEYIQNQKDGMFKDQSFSALENSNIVRSSKH-FI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E + A++ N++L L + Q+ E + Sbjct: 475 PLREAVILLILAYYPELWYENFDVFAELELKNDQLMSLHQSMLEILGNQQLCDKETMTVL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E+G +L+ +D V+ G+ A + D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEEKGKKSILEHIDNLVQRVGMRITFGGAPVEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 ++ + +L EV ++ + ++ EA+IEGFG Sbjct: 595 ELI-------KNPRDEVFDLLREVKAELERTQATEALIEGFGS 630 >gi|319406861|emb|CBI80496.1| DNA primase [Bartonella sp. 1-1C] Length = 642 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 245/643 (38%), Positives = 372/643 (57%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P DF+ ++ +PIS +IGQ V +D++K+ +GD+W CCPFH EKTPSFHC+D +G Sbjct: 1 MRIPPDFLDEIRARLPISVVIGQRVKFDQKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C+ GD +FL L G F ESV+RLA AG+ LPV+D + K E + DL + Sbjct: 61 RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPVLDLQNHKDEMKKNDLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF ++L + + +YLDERG+ F++G+AP R +L++ L +G S Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLDERGVTLELARRFQIGFAPIGRTTLKDALSARGISL 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLLI G++ +T YDRFRNR+IFPI RG+V+AFGGR+L K KYLNSPET+ Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIEDLRGRVVAFGGRSLDKSARAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN + + + +++VEGYMDV++L + G + VV+ LGT Sbjct: 241 LFHKGNMLYNAASIRKNSR-----AAEKKEACSVLVVEGYMDVIALTKVGFEKVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++ +LCFDGD+ GL+AA++ D VL L G V FVLL G+DPD Sbjct: 296 ALTETQIELLWQMESDPILCFDGDNAGLKAAFRVADRVLPLLKAGKSVRFVLLPNGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR F + +++PL+++LW R T + F TP+ RA LE LK I IKD+ + Sbjct: 356 EIIRAGDAHLFSSFVQKAIPLIELLWWRATSGKHFTTPEARAALERELKQQIATIKDKDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 YY Q I+ RL + F+ + +H G Y + + L S++V+ Sbjct: 416 YRYYFQDIKRRLFEFFRSSLLQHKKQGEYIQNQKDGMFKDQSFSALENSNIVRSSKH-FI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E + A++ N +L L + Q+ + E + Sbjct: 475 PLREAVILLILAYYPELWYENFDVFAELELKNAQLMSLHQSMLEILGNQQLYDKETMTVL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E+G +L+ +D V+ G+ A + D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEEKGKKSILEHIDNLVQRIGMRITLGGAPVEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 ++ + +L EV ++ + ++ EA+IEGFG Sbjct: 595 ELI-------NNPRDEVFDLLREVKAELERTQATEALIEGFGS 630 >gi|319405290|emb|CBI78904.1| DNA primase [Bartonella sp. AR 15-3] Length = 635 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 244/643 (37%), Positives = 370/643 (57%), Gaps = 13/643 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P DF+ ++ +PIS +IGQ V +D++K+ +GD+W CCPFH EKTPSFHC+D +G Sbjct: 1 MRIPPDFLDEIRARLPISVVIGQRVTFDKKKSKPSRGDFWCCCPFHGEKTPSFHCDDRQG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C+ GD +FL L G F ESV+RLA AG+ LP D + K E + DL + Sbjct: 61 RYYCFGCNTSGDIFTFLCELDGLRFSESVERLANFAGMKLPTFDLQNHKDEMKKNDLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ATDFF ++L + + +YL ERG+ + F++G+A R +L++ L +G S Sbjct: 121 MKIATDFFQNNLHHQIGAQARHYLYERGVTLELAKRFQIGFASVGRTTLKDALSVRGISL 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ + GLLI G++ +T YDRFRNR+IFPI+ RG+V+AFGGR+L + KYLNSPET+ Sbjct: 181 KQMEDCGLLISGEDISTPYDRFRNRIIFPIQDLRGRVVAFGGRSLDENARAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN + + + +++VEGYMDV++L +AG + VV+ LGT Sbjct: 241 LFHKGNMLYNAASVHKNSR-----ISEKGEAYSVLVVEGYMDVIALTKAGFEKVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+RLLW++ +LCFDGD GL+AA++ D VL L G V FVLL G+DPD Sbjct: 296 ALTETQIRLLWQMESDPILCFDGDSAGLKAAFRVADRVLPLLRAGKSVRFVLLPNGKDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR F + +S+PL+++LW R T + F TP+ RA LE LK I+ IKDQ + Sbjct: 356 EMIRAGDAHLFSSFVQKSIPLIELLWWRATFGKHFPTPEARAALERELKQQISTIKDQDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY Q I+ RL F+ + R + +N + S +++S + Sbjct: 416 RRYYFQDIKRRLFDFFRSSFLKQKNQ-REYIQNQKDGMFNDQSFSALENSNIVRSSKHFI 474 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +LL L +P + E + A++ N +L L + Q+ E + Sbjct: 475 PLREAVILLILAYYPELWYEDFDVFAELELKNAQLISLHQSMLEILGSQQLCDKETMSVL 534 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ++G +L+ +D + G+ + A I D R +QA+ L+ + L ++ ++IE+ Sbjct: 535 LEKKGKKTILEHIDNLAQRVGMRITSGGAPIEDARAVLKQAIYLHLQEHHLHKRLQDIEE 594 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 Q+ + +L EV ++ + ++ EA+IEGFG Sbjct: 595 QLI-------KNPRDEVFDLLREVKAELERTKALEALIEGFGS 630 >gi|300023332|ref|YP_003755943.1| DNA primase [Hyphomicrobium denitrificans ATCC 51888] gi|299525153|gb|ADJ23622.1| DNA primase [Hyphomicrobium denitrificans ATCC 51888] Length = 661 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 218/667 (32%), Positives = 332/667 (49%), Gaps = 54/667 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + +F+ ++ +P+S ++G+ V + +Y PF EK+PSF ND KG Sbjct: 1 MRFNPNFLDEIRARLPVSQVVGRKVALKKAGR-----EYRGLSPFKTEKSPSFFVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ GD +FL G F E+V+RLA AGVP+P + E + L RL Sbjct: 56 FYHCFASGEHGDIFTFLMKTEGLEFPEAVERLAQEAGVPMPKQPERNVADEDQRDRLYRL 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + FF SL++ Y+++RG+ + F+LG+AP+SR +L HL+ KGFS Sbjct: 116 LEASAAFFEESLRSGLGAEARRYIEKRGLQHETVRAFRLGFAPNSRTALTAHLKGKGFSL 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + AG+LI G + YDRFRNR++FPI +G+VIAFGGR L K KYLNSPET Sbjct: 176 ADMASAGMLIAGSDIPEPYDRFRNRVMFPILDLKGRVIAFGGRALEKDVPAKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A + R +I+VEGYMDV++L + G V+ LGT Sbjct: 236 LFHKGHTLFNAARARSAAHDKNR----------VIVVEGYMDVVALAEGGFAESVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q++LLW+ +P LCFDGD G +AA +A+++ L L PG+ + F L G DPD Sbjct: 286 ALTEDQVKLLWRFAPEPTLCFDGDSAGRKAADRAVEVALPWLKPGHSLGFAFLPDGLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ PLVD+LW RE +TP++RA LE L + I+D + Sbjct: 346 DLIRQQGAAAMSDALSKARPLVDVLWDRELRAAPSDTPEQRAALEARLFALVGTIQDATV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------HSGYGRYWKKNARHRDQKG 461 R +Y + +RDRL QL + K G Sbjct: 406 RSHYQRELRDRLYQLGRNRFPRPMAGLPTGRQGGGIAQASYARPVAAPDWKARDRARLNG 465 Query: 462 PSQRLMQSSLVKGKLSKKPSL---------REAALLLTLINHPAILQEQYQELADIRYDN 512 P +R + + ++ P L REA ++ TL+NHP ++ E + +A I + + Sbjct: 466 PERRFTKKNNAPELVNASPELAGHMQSVLPREALIMKTLLNHPWLIDEHSEAIAVIEFSS 525 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 L L + + Q + +L + G +++ + R + A +A+ Sbjct: 526 QPLTALRDEILAVHARQNSLDRASLGTQLSKSGVAKVVDLVARTITHISDRFAEPDASAT 585 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 DV + LAL++R L R + E+ + + T + L ++ QI + Sbjct: 586 DVEAAWNHILALHQRQDALGRALKAAEEAWYR-------DCTEEAETHLLDIKRQIAR-- 636 Query: 633 SQEAMIE 639 EA ++ Sbjct: 637 --EASMD 641 >gi|218528656|ref|YP_002419472.1| DNA primase [Methylobacterium chloromethanicum CM4] gi|218520959|gb|ACK81544.1| DNA primase [Methylobacterium chloromethanicum CM4] Length = 641 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S ++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD F+ G SF E+V+RLA AGV LP + + E+ E+ + + + Sbjct: 56 FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ YLD R + + F+LGY+ RY+LR+ L KG Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLASKGVDR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLL + YD+FR+R++FPI RG+V+AFGGR + KY+NSPET Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A R I+ VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRMLYNLHAARKAAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAA++A+D+ L L PG + +L +G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A E ++ + PLV+MLW RE E + TP+ RA L L+ + I+D+ + Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464 R +Y I RL+ L + G + P Q Sbjct: 406 RRFYRDDIEGRLRGLSDGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465 Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L++++ + + REA ++++L+ HP +L + + LA + N + + L + Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L E E + RL G E +L V W+ A+ + Q QA Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626 >gi|240137187|ref|YP_002961656.1| DNA primase [Methylobacterium extorquens AM1] gi|240007153|gb|ACS38379.1| DNA primase [Methylobacterium extorquens AM1] Length = 641 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S ++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD F+ G SF E+V+RLA AGV LP + + E+ E+ + + + Sbjct: 56 FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ YLD R + + F+LGY+ RY+LR+ L KG Sbjct: 116 MELAAVYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLASKGVDR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLL + YD+FR+R++FPI RG+V+AFGGR + KY+NSPET Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A R I+ VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRMLYNLHAARKAAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAA++A+D+ L L PG + +L +G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A E ++ + PLV+MLW RE E + TP+ RA L L+ + I+D+ + Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464 R +Y I RL+ L + G + P Q Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465 Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L++++ + + REA ++++L+ HP +L + + LA + N + + L + Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L E E + RL G E +L V W+ A+ + Q QA Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626 >gi|163850053|ref|YP_001638096.1| DNA primase [Methylobacterium extorquens PA1] gi|163661658|gb|ABY29025.1| DNA primase [Methylobacterium extorquens PA1] Length = 641 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 204/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S ++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD F+ G SF E+V+RLA AGV LP + + E+ E+ + + + Sbjct: 56 FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ YLD R + + F+LGY+ RY+LR+ L KG Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALGETTRKTFRLGYSLPGRYALRDFLASKGVDR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLL + YD+FR+R++FPI RG+V+AFGGR + KY+NSPET Sbjct: 176 DLMLELGLLAAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A R II VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IIAVEGYVDVIAMTLAGYPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAA++A+D+ L L PG + +L +G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A E ++ + PLV+MLW RE E + TP+ RA L L+ + I+D+ + Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464 R +Y I RL+ L + G + P Q Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRPERAAGGRPAAPRGAPFQRRPRPGDPPPSPRITT 465 Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L++++ + + REA ++++L+ HP +L + + LA + N + + L + Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L E E + RL G E +L V W+ A+ + Q QA Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626 >gi|254559199|ref|YP_003066294.1| DNA primase [Methylobacterium extorquens DM4] gi|254266477|emb|CAX22241.1| DNA primase [Methylobacterium extorquens DM4] Length = 641 Score = 455 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 203/648 (31%), Positives = 321/648 (49%), Gaps = 41/648 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S ++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRARVPTSEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD F+ G SF E+V+RLA AGV LP + + E+ E+ + + + Sbjct: 56 FYHCFSSGKHGDIFKFVMETEGLSFPEAVERLAGEAGVTLPKMTVENEQAEERRKGALEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ YLD R + + F+LGY+ RY+LR+ L KG Sbjct: 116 MELAAVYFEEQLRGQAGGEARAYLDRRALGEATRKTFRLGYSLPGRYALRDFLAGKGVDR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLL + YD+FR+R++FPI RG+V+AFGGR + KY+NSPET Sbjct: 176 DLMLELGLLTAPEGVNVPYDKFRDRIMFPILDIRGRVVAFGGRAMQAEAKAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A R I+ VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IVAVEGYVDVIAMTLAGYPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAA++A+D+ L L PG + +L +G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A E ++ + PLV+MLW RE E + TP+ RA L L+ + I+D+ + Sbjct: 346 DLMRSGGPSAIEAVLSAARPLVEMLWAREAEAATLETPERRAGLARTLREAVAGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---------------- 464 R +Y I RL+ L + G + P Q Sbjct: 406 RRFYRDDIEGRLRGLSGGPASFSGGRSERAAGGRPASPRGAPFQRRPRPGDPPPSPRITT 465 Query: 465 ---RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L++++ + + REA ++++L+ HP +L + + LA + N + + L + Sbjct: 466 GFNPLLKTAAPVPAAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDARALRTL 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L E E + RL G E +L V W+ A+ + Q QA Sbjct: 526 LLDRAAEAGTPEAELMEARLRRAGLEEAHARLLALVSSGDRWTLDPNADPQRLEQTLHQA 585 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 586 VILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 626 >gi|188579855|ref|YP_001923300.1| DNA primase [Methylobacterium populi BJ001] gi|179343353|gb|ACB78765.1| DNA primase [Methylobacterium populi BJ001] Length = 642 Score = 447 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 207/649 (31%), Positives = 322/649 (49%), Gaps = 42/649 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S ++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHILEEIRARVPASEVVGRRVRLKKAGR-----EWRGLSPFNSEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL G SF E+V+RLA+ AGV LP + + E+ E+ + I + Sbjct: 56 FYHCFSSGKHGDIFKFLMETEGLSFPEAVERLASEAGVTLPKMTVESEQAEERRKGAIEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ YLD R + + F+LGY+ RY+LR+ L KG Sbjct: 116 MELAAAYFEEQLRGQAGGEARAYLDRRALSEATRQKFRLGYSLPGRYALRDFLAGKGVDR 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++E GLL + + YD+FR+R++FPI RG+V+AFGGR + KY+NSPET Sbjct: 176 DLMLELGLLTAPEGVSVPYDKFRDRIMFPILDIRGRVVAFGGRAMQADAKAKYMNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A R II VEGY+DV+++ AG V+ LGT Sbjct: 236 LFHKGRMLYNLHAARKSAHDRSR----------IIAVEGYVDVIAMTLAGYPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+ + +LCFDGD G RAA++A+D+ L L PG + +L +G+DPD Sbjct: 286 ALTEDQLALLWRHADEPILCFDGDGAGQRAAFRALDVALPMLEPGKSLRIAMLPQGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A E ++ + PLV+MLW RE E + +TP+ RA L L+ + I+D+ + Sbjct: 346 DLMRASGPAAIEAVLSGARPLVEMLWAREAEAATLDTPERRAGLARTLREAVAGIRDETV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------------- 463 R +Y I DRL+ L +G R +G Sbjct: 406 RRFYRDDIEDRLRSLSGGSGGGFAGGRSERAAGGRPPSPRGAPFQRRPRPGDPPPSPRIT 465 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 L++++ + + REA ++++L+ HP +L + + LA + N + L + Sbjct: 466 TGFNPLLKAAAPVPTAGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVNPDASALRT 525 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 L E PE + RL G E +L V W A+ + Q Sbjct: 526 LLLDRAAEAGTPEPELMEARLRRAGLEEAHARLLTLVNPGDRWMLDPNADPQRLEHTLHQ 585 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 A+ L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 586 AVILHRQTGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 627 >gi|254512191|ref|ZP_05124258.1| DNA primase [Rhodobacteraceae bacterium KLH11] gi|221535902|gb|EEE38890.1| DNA primase [Rhodobacteraceae bacterium KLH11] Length = 648 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 217/638 (34%), Positives = 344/638 (53%), Gaps = 22/638 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S ++G+ V WD+RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRLSLSQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKTASFHVDDQKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ SFIE+V+ LA AG+P+P DPK ++K+ ++ L + Sbjct: 61 FYYCFGCHAKGDAISFVKETENVSFIEAVEILAREAGMPMPARDPKAQEKQDRRSQLADV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK YL RG+D+ A++ +++G+APD +L +HLR K +E Sbjct: 121 MEQAVQFFRLQLKTGAGAAARDYLTRRGLDAQALDRWEIGFAPDGWQALWDHLRGKNVTE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL + YD FRNR+I+PIR RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILGAGLAKPSNKGKKPYDTFRNRIIYPIRDPRGRCIAFGGRAMDPNDNAKYLNSPETD 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRSLYNHGPARQAAGK----------GQPLIVAEGYMDVIALAEAGFGASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL+LLW++S ++ DGD GLRAA +A+DL L L G + F L+ G+DPD Sbjct: 291 AITEHQLQLLWRISNEPIIALDGDTAGLRAAMRAVDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + ++ ++P+V +LW+RETE + F++P+ +A L+ L++ I I+D + Sbjct: 351 DLLRAEGPGAVQAVLEGAIPMVKLLWQRETEGKVFDSPERKAALDKSLRDKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y Q I+D QLF+ + + + P+ ++S + + Sbjct: 411 RSHYGQEIKDLRWQLFRPQRQSQN----RAWQPRGKWQPQQPATPGARASFLASSENADI 466 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREAA+L + +P ++ + +L ++ N + L + ++ L + I Q Sbjct: 467 ELREAAILAIALLNPDVVVQFETQLEEMDCRNPDHSALRGAILRHAIDDPENLKDHIVQT 526 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L LL A + ++ + + LA K R L + E + Sbjct: 527 LGPEPLENLLA----LRHVAVIPCVYKPGDVEKAQMTLAEELAKIKALRGLDAEIAEAAE 582 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 +++ + + T L E + + ++++ + Sbjct: 583 ELSDL---ADEALTYRLAQAAEE-RNRTSRSQNEDKAV 616 >gi|220927259|ref|YP_002502561.1| DNA primase [Methylobacterium nodulans ORS 2060] gi|219951866|gb|ACL62258.1| DNA primase [Methylobacterium nodulans ORS 2060] Length = 629 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 216/632 (34%), Positives = 326/632 (51%), Gaps = 25/632 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P+S+++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHLLEEIRARLPLSDVVGRKVRLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL G SF E+V+RLAA AGV LP + E+ + + + Sbjct: 56 FYHCFSSGKHGDVFRFLQETEGLSFPEAVERLAAEAGVALPAPSRETRDSEERRRGALEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L R YL RG+ F+LGYAP R++LR+HL + Sbjct: 116 MELAAAFFESQLAGRPGGRARDYLARRGLGEAVQRDFRLGYAPGERFALRDHLAARDVPA 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +IE GLL+ G++ A YDRFR+R+IFPIR RG+VIAFGGR L+ KYLNSPET Sbjct: 176 DLMIELGLLVGGEDIAVPYDRFRDRVIFPIRDLRGRVIAFGGRGLAPDAKPKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + R +I VEGY+DV+++ G V+ LGT Sbjct: 236 LFHKGSVLYNHHAARRAAHDTSR----------VIAVEGYVDVIAMTMGGHPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW+++ +LCFDGD G RAAY+A+D+ L L PG + F LL G+DPD Sbjct: 286 ALTEDQLALLWRMADEPILCFDGDGAGRRAAYRALDVALPGLAPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A ++++ + PLV++LW RETE +TP+ RA L L+ + I+D+ L Sbjct: 346 DLLRSGGAAALDRVLEAARPLVEVLWSRETEMTPVDTPERRAGLAQRLRELVGQIRDETL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--- 477 R +Y I RL+ L + AR D+ + ++S + + S Sbjct: 406 RRFYRDEIEARLRSLGPSPAARARREAAPFVPRARLTDRAASPRLTARASPLLARSSLFA 465 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 S REA ++ L+ HP +L + ++LA++ + + + L L E E + Sbjct: 466 GGTSPREALIIGMLLVHPELLAGEVEDLAELDLASVDARALRQALIDHAAEGGIGDAEAV 525 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + RL G ++ VR W+ A+ V + +QA+ L+++ L Sbjct: 526 NARLERVGLAAAAGRIAAHVRPGDRWALDPHADPVRLEDALRQAVILHRKAGSLH----- 580 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ E+T + L +V ++ Sbjct: 581 --SELRAAERALAEEETEANFAWLRDVLDRLA 610 >gi|154252763|ref|YP_001413587.1| DNA primase [Parvibaculum lavamentivorans DS-1] gi|154156713|gb|ABS63930.1| DNA primase [Parvibaculum lavamentivorans DS-1] Length = 633 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 225/651 (34%), Positives = 348/651 (53%), Gaps = 43/651 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M++P+ F+ +L I +S ++G+ V RR ++ PF +EK+PSF ND K Sbjct: 1 MSFPKAFLDELKGRIRVSEVVGRKVKLIRRGR-----EFVGLSPFSNEKSPSFTVNDDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CFS GD + FL SFIE+V+RLAA AG+ +P D + ++EK LI + Sbjct: 56 FFHCFSSGEHGDVIKFLEKTENLSFIEAVERLAAEAGMEMPKRDSFVAEREKEAATLIDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQK 176 +E+A FF L+ YLD RG+ + ++ F +GYAP R +L +L+ + Sbjct: 116 MEMAAQFFRQKLQEGAGAEARAYLDRRGMKAKTLDDFGVGYAPGDERADRTALMRYLKSR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++E++ EAGL+I G + +DRFRNR++FPI +RG+VIAFGGR L+ KYLNS Sbjct: 176 DVTQEQMAEAGLIISGPDIREPHDRFRNRVMFPIADARGRVIAFGGRALASDAKAKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LFHKG+ LYN A +I VEGYMDV+ L Q G+ N V+ Sbjct: 236 PDTPLFHKGRVLYNLNRARKPAY----------DEGTVIAVEGYMDVIGLSQGGIDNAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTALTE Q+ LLW+++P +LCFDGD GLRAAY+A++ VL L PG+ + F LL G Sbjct: 286 PLGTALTEDQIALLWRMAPEPILCFDGDKAGLRAAYRAVERVLPLLKPGHSLRFALLPEG 345 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD +R G A ++ ++ PL +M+W++E ++TP+ RA+LE L+ + I Sbjct: 346 KDPDDLVREEGGQAMRDILAKARPLAEMVWEKEISAGQWDTPERRAKLEADLEAAVATIS 405 Query: 417 DQKLRYYYSQAIRDRLQQLF------------QKYITEHSGYGRYWKKNARHRDQ---KG 461 D K+R +YS +R ++QQ F + +GR +KK +RD+ Sbjct: 406 DPKVRGHYSDNLRAKVQQFFGGSARGGQRAGLGQNRFPRGQFGRPFKKGTFNRDRDYIPP 465 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + L +S+L G REA LLLTL+NHP +L+ +E++ + L +L + Sbjct: 466 ITPELRRSALASGGGG--ERSREALLLLTLLNHPELLENYAEEVSRVEIGTPALDRLRNE 523 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + E + L R E+ ++L+ A +A + G+ Sbjct: 524 IIDIAALHAPLEREALRNHLLSRDLAEIARRLEAGSAFKSDRFAWPDAAPDEAEAGFLHT 583 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 LA ++R +L + + E+ +A+ E T + L +H Q+ + E Sbjct: 584 LARHRRAIVLQAELKAAERALAE-------EMTEENFARLQAIHAQLERSE 627 >gi|83955716|ref|ZP_00964296.1| DNA primase [Sulfitobacter sp. NAS-14.1] gi|83840010|gb|EAP79186.1| DNA primase [Sulfitobacter sp. NAS-14.1] Length = 657 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 215/612 (35%), Positives = 326/612 (53%), Gaps = 17/612 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRSRASLSQVVGRKVMWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ SF+E+V+ LA AG+P+P DP+ ++K +T L + Sbjct: 61 FYYCFGCHAKGDAISFVRETENVSFMEAVEILAREAGMPMPKQDPRAQEKADKRTQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ A YL RG+ A+E +++G+APD L +HL+ K + Sbjct: 121 MELAVQYFRLQLRTAAAGAARDYLAGRGLTPQALEQWEIGFAPDQWQGLWDHLKAKNVED 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I+ AGL YD FR R+++PIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ALILGAGLAKPSSKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A +I+ EGYMDV++L QAG V+ LGT Sbjct: 241 LFDKGRSLYNVRDARTAA----------GQGKPLIVAEGYMDVIALVQAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW++SP ++ DGD G RAA + IDL L L G + F ++ G+DPD Sbjct: 291 AITESQLQMLWRISPEPIITLDGDAAGQRAAMRLIDLALPLLEAGQSLRFAVMPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R +G A +KL+ ++P+V +LW+RET+ R F++P+ +A L+ L+ I IKD + Sbjct: 351 DLLRAHGAPALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAGLDKALREKIMMIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLS 477 R +Y Q I+D QLF+ + S R +GPS S LV L Sbjct: 411 RSHYGQEIKDLRWQLFRPQKAKRDFSPVARASGGGKWAPAPQGPSPSAKSSILVTAAGLG 470 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 LREA +L+ L+ P +++E LA +R + + ++ + L E+I Sbjct: 471 ATEHLREAVILMALLGCPQLVEEFENGLAAMRCQDPDHGRIRDLMLRHVHHDPAVLREKI 530 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E +L Q + + N+ R + L + R L + + Sbjct: 531 YDAVGEYTLENMLSQRHVAITP----CIRSPGNLEKTRMTVAEELGKLEAVRGLDEEIAD 586 Query: 598 IEKQIAQVTAKG 609 + + +G Sbjct: 587 AVEDLTGTADEG 598 >gi|260434102|ref|ZP_05788073.1| DNA primase [Silicibacter lacuscaerulensis ITI-1157] gi|260417930|gb|EEX11189.1| DNA primase [Silicibacter lacuscaerulensis ITI-1157] Length = 650 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 226/638 (35%), Positives = 348/638 (54%), Gaps = 20/638 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S ++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRLSLSQVVGRKVMWDNRKSNPGKGDMWAPCPFHHEKTASFHVDDQKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ SF+E+V+ LA AG+P+P DPK ++K+ + L + Sbjct: 61 FYYCFGCHAKGDAISFVKETENVSFMEAVEILAREAGLPMPARDPKAQEKQDHRAQLADV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK YLD RG+D+ A++ +++G+APD +L +HLR K +E Sbjct: 121 MEQAVQFFRLQLKTGAGAEARAYLDRRGLDAQALDRWEIGFAPDGWQALWDHLRGKNVAE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL + YD FRNR++FPIR RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILGAGLAKPSNKGKKPYDTFRNRIMFPIRDPRGRCIAFGGRAMDPNDNAKYLNSPETA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRSLYNHGPARQAAGK----------GQPLIVAEGYMDVIALSEAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL +LW++S ++ DGD GLRAA +AIDL L L+ G + F L+ G+DPD Sbjct: 291 AITEHQLHMLWRISDEPIIALDGDTAGLRAAMRAIDLALPLLVAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + ++ ++P+V +LW+RETE + F++P+ +A L+ L+ I I+D + Sbjct: 351 DLLRAEGPAAVQAVLDAAIPMVRLLWRRETEGKVFDSPERKAALDKALREKIQLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y Q I+D QLF+ R W+ + + K + ++S + + Sbjct: 411 RSHYGQEIKDLRWQLFRPQRQ--GAGARNWQPKGKWQPPKPLATPDARASFLASSENADI 468 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREAA+L T I +P ++ + +L ++ + EL L + ++ L E I + Sbjct: 469 RLREAAILATAILNPQVVIQFETQLEEMECLDPELAALRDVVLRHAIDDPDNLKEHIVRT 528 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L L R A + ++ + + LA K R L + E E+ Sbjct: 529 LGAAPLEN----LMRLRHVAVIPCVRKPGDVEKAQMTLAEELAKIKALRGLDAEIAEAEE 584 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 +++ VT + T L E + + ++++ I Sbjct: 585 ELSDVT---DEALTFRLAQAAEE-RNRASRSQNEDRAI 618 >gi|83941157|ref|ZP_00953619.1| DNA primase [Sulfitobacter sp. EE-36] gi|83846977|gb|EAP84852.1| DNA primase [Sulfitobacter sp. EE-36] Length = 657 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 215/612 (35%), Positives = 325/612 (53%), Gaps = 17/612 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRSRASLSQVVGRKVMWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ SF+E+V+ LA AG+P+P DP+ ++K +T L + Sbjct: 61 FYYCFGCHAKGDAISFVRETENVSFMEAVEILAREAGMPMPKQDPRAQEKADKRTQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ A YL RG+ A+E +++G+APD L +HL+ K + Sbjct: 121 MELAVQYFRLQLRTAAAGAARDYLAGRGLTPQALEQWEIGFAPDQWQGLWDHLKAKNVED 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I+ AGL YD FR R+++PIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ALILGAGLAKPSSKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A +I+ EGYMDV++L QAG V+ LGT Sbjct: 241 LFDKGRSLYNVRDARTAA----------GQGKPLIVAEGYMDVIALVQAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW++SP ++ DGD G RAA + IDL L L G + F ++ G+DPD Sbjct: 291 AITESQLQMLWRISPEPIITLDGDAAGQRAAMRLIDLALPLLEAGQSLRFAVMPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R +G A +KL+ ++P+V +LW+RET+ R F++P+ +A L+ L+ I IKD + Sbjct: 351 DLLRAHGAPALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAGLDKALREKIMMIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLS 477 R +Y Q I+D QLF+ + S R GPS S LV L Sbjct: 411 RSHYGQEIKDLRWQLFRPQKAKRDFSPVARASGGGKWAPAPPGPSPSAKSSILVTAAGLG 470 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 LREA +L+ L+ P +++E LA +R + + ++ + L E+I Sbjct: 471 ATEHLREAVILMALLGCPQLVEEFETGLAAMRCQDPDHGRIRDLMLRHVHHDPAVLREKI 530 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E +L Q + + N+ R + L + R L + + Sbjct: 531 YDAVGEYTLENMLSQRHVAITP----CIRSPGNLEKTRMTVAEELGKLEAVRGLDEEIAD 586 Query: 598 IEKQIAQVTAKG 609 + + +G Sbjct: 587 AVEDLTGTADEG 598 >gi|85705218|ref|ZP_01036317.1| DNA primase [Roseovarius sp. 217] gi|85670091|gb|EAQ24953.1| DNA primase [Roseovarius sp. 217] Length = 650 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 218/661 (32%), Positives = 327/661 (49%), Gaps = 31/661 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S ++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELQSRLSLSQVVGRKVTWDNRKSNQGKGDMWAPCPFHQEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LAA AG+P+P DP+ + K + LI + Sbjct: 61 FYYCFGCHAKGDAIAFVRETENVDFMEAVKILAAEAGMPMPERDPQAQAKADRRGQLIEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L++ YL R + F +G+APD L EHL KG Sbjct: 121 MEQAVKYFGLQLRSGAGAAARDYLKGRNLTEATQAQFDMGFAPDGWQGLWEHLTGKGVPP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ GL D YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 EMILACGLAKDSTKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETD 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K LYN A K +I+ EGYMDV++L AG V+ LGT Sbjct: 241 LFDKSHTLYNHGPAREASGK----------GQTLIVAEGYMDVIALVAAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL+L+W++S V+ DGD GLRAAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTEHQLQLMWRISSEPVIALDGDTAGLRAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G +A + I + P+V +LW+RETE R F++P+ +A L+ L+ I I+D + Sbjct: 351 DVLRSEGASAVQAHIEGAWPMVQLLWQRETEGRDFDSPERKAALDKVLREKIMMIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y QAI+D QLF + + R + + + S LV + Sbjct: 411 RSHYGQAIKDLRWQLFNPRRSASTFTPRA--RGGKWPPPEPARAVTKSSMLVASGAGGEI 468 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +L TLI P+++ + + + + +L + + E + ++ Sbjct: 469 HLREAVILATLICCPSVMARFETGIEQLECRDPDHARLREIILRY----ESGDVEALREQ 524 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L++L A + + + LA K R + E + Sbjct: 525 IEVEIGLGPLEKLMSLPHVALIPPVRHPGDEDLATMTLSEELAKLKAQRGWLAEVSEASQ 584 Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 I A+ A ++ +++ +I+ E E F + G+ Sbjct: 585 DIDGLADEALTWRLGQAAEARNRATRSQQEDRAEYDLGENGARIKRDE--KEQFNALLGK 642 Query: 648 L 648 + Sbjct: 643 I 643 >gi|255262664|ref|ZP_05342006.1| DNA primase [Thalassiobium sp. R2A62] gi|255104999|gb|EET47673.1| DNA primase [Thalassiobium sp. R2A62] Length = 649 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 215/662 (32%), Positives = 344/662 (51%), Gaps = 37/662 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + I+ ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPDGFLDELRTRLSIAQVVGRKVIWDPRKSNQGKGDMWAPCPFHQEKSASFHVDDQKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F+E+VQ LA AG+P+P DP+ +KK +T L + Sbjct: 61 YYYCFGCHAKGDAISFVRETENVGFMEAVQILAGEAGMPMPQRDPEAQKKADRRTQLADV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF SLK YL RG + ++E +++G+APD +L +HL KG S Sbjct: 121 MEQAVQFFRLSLKTGPASEARDYLVGRGFNDTSLERWEIGFAPDGWQNLWDHLTAKGVSP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +++ GL YD FRNR++FPIR G+ IAFGGR + ++ KYLNSPET+ Sbjct: 181 DMMMDCGLAKPSSKGGKPYDTFRNRIMFPIRDGLGRAIAFGGRAMDPNDNAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRNLYNQKPAREAAGK----------GGDLIVAEGYMDVIALSEAGFGATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W+++ ++ DGD G+RAA + ID L L G V F L+ G DPD Sbjct: 291 AITEDQLRLMWRIAREPIIALDGDTAGMRAAMRVIDTALPMLEAGQSVRFALMPEGMDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G A + L+ +++P+V +LW+RETE + F++P+ +A L+ L+ I IKD + Sbjct: 351 DLVKGQGPGAMQALLDQAIPMVQLLWRRETEGKVFDSPERKAALDKALRAKIQEIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y + I+ +LF+ G + + +G ++S++ + + Sbjct: 411 RSHYGEEIKSLRWELFR---QNRGGTAKSTYQPRGKWQPQGVPMASTKASVLGAGAAAED 467 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LRE+ +L TLI++PAIL + L + ++E + + L +Q L + Sbjct: 468 HLRESVILATLISNPAILGQFESALERMICASSEHEAIRHALLRHVGDQPEVLRGNLVGE 527 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + L++L Q A + + + L R +R+ + + Sbjct: 528 LGP----DTLEKLMSQSHVAITPAVRRAGDTEIAAACVAEELDKLGAKRGHAREIADAVE 583 Query: 601 QIAQVTAKGEAEKTAILISIL-------HEVHIQIH------QIESQE-----AMIE--G 640 ++ + +G + + + + E + +++ E A+++ G Sbjct: 584 DLSGIADEGVTWRLSQAANAINGTGRGAQEDKTEFETGENGAKMKKDERSKFDALLDQIG 643 Query: 641 FG 642 FG Sbjct: 644 FG 645 >gi|110679090|ref|YP_682097.1| DNA primase [Roseobacter denitrificans OCh 114] gi|109455206|gb|ABG31411.1| DNA primase [Roseobacter denitrificans OCh 114] Length = 651 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 210/635 (33%), Positives = 332/635 (52%), Gaps = 17/635 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRLSLTQVVGRKVMWDARKSNQGKGDMWAPCPFHQEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ F+E+V+ LA AG+P+P D + ++K +T L + Sbjct: 61 FYYCFGCHAKGDAISFVCETENVGFMEAVRILAQEAGMPVPERDLQAQQKADRRTQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L YL+ RG+ + +E +++G+APD L +HL+ K ++ Sbjct: 121 MELAVKYFRLQLNTGLAAEARGYLERRGLSAQVLERWEIGFAPDQWQGLWDHLKAKSVAD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL YD FR R+++PIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILAAGLAKPSTKGGRPYDTFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K +I+ EGYMDV++L AG V+ LGT Sbjct: 241 LFDKGRSLYNQKEARTAAGK----------GQPLIVAEGYMDVIALDAAGFTAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW+++P ++ DGD GLRAA + IDL L L G + F ++ G+DPD Sbjct: 291 AITENQLQMLWRIAPEPIVALDGDTAGLRAAMRLIDLALPLLEAGRSLRFAIMPAGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A +KL+ E+LP+V +LW+RETE F++P+ +A LE L++ + IKD + Sbjct: 351 DLLREQGAGALQKLLDEALPMVQLLWQRETEGGVFDSPERKAALEKALRDKVALIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + +Y Q ++D QLF+ ++ G+ + + P Q S+L + Sbjct: 411 QNHYKQELKDLQWQLFRPQRQKNKGWRKGGRP--WGASVATPLQSTKASALASAQTIDVT 468 Query: 481 S-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LREA LL P++++E +L + ++ Q L L + I + Sbjct: 469 ENLREAVLLAAFATCPSVIEEFESDLERMTCSDHTHQALRDILLRHMSATAAEMRAVISE 528 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L LL Q A + ++ R + A R L+ + EE Sbjct: 529 TLGPDALENLL----TQSHVAIVPCIRRPGDVEKTRMTVAEEFAKLSATRGLNAEIEEAS 584 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ + +G + + +H+ ++ Sbjct: 585 EDMSGLADEGLTWRLSQAAKAAENARKSVHEDRAE 619 >gi|83951482|ref|ZP_00960214.1| DNA primase [Roseovarius nubinhibens ISM] gi|83836488|gb|EAP75785.1| DNA primase [Roseovarius nubinhibens ISM] Length = 648 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 207/603 (34%), Positives = 315/603 (52%), Gaps = 17/603 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I+ ++G+ V WD+RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRNRTSIAQVVGRKVMWDKRKSNPGKGDLWAPCPFHHEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD + F+ F+E+V+ LA AG+ LP DP+ + K T L + Sbjct: 61 YYYCFGCHAKGDAIGFVRETENVEFMEAVRILAQEAGMTLPERDPQAQAKADRITLLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L YL RG+ + E F++G+ P+ L + L +G Sbjct: 121 MEQAVRYFRMQLHAGAGAAAREYLARRGLSAETQERFEIGFVPEGWQGLWDTLSGQGVEA 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I++ GL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET+ Sbjct: 181 QMILDCGLARESSKGKQPYDVFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K +NL+N A K +++ EGYMDV++L QAG + V+ LGT Sbjct: 241 LFDKSRNLFNLGPAREAAGK----------GLPLVVAEGYMDVIALAQAGHEAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL +LW+++ V+ DGD G++AAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTETQLAMLWRVADEPVMALDGDRAGVQAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + + +LP+V++LW+RETE RSF++P+ +A L+ L+ I I D + Sbjct: 351 DLIREGGIEALREKVEGALPMVELLWRRETEGRSFDSPERKAALDKVLREVIKRIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y QAI+D QLF K R + + P S+L+ ++ + Sbjct: 411 RGHYGQAIKDLRWQLFSPQRKPRQD---RGKWTPRGQMEMAPKPSTKASALLAADVAAQE 467 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREAA+L L+ P + E +L + +++L L + + + + E Sbjct: 468 RLREAAILAVLLATPEVAIEFEAQLERLECRDSDLGLLRDVILRHCDKGREAVVEAAENA 527 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L G L A + + ++ R + LA R ++ + E + Sbjct: 528 LGGVGLEN----LTSLPHVALVPAVRRPGDVDLARVTVAEELAKIAATRGIAVEISEAME 583 Query: 601 QIA 603 +A Sbjct: 584 DLA 586 >gi|254465869|ref|ZP_05079280.1| DNA primase [Rhodobacterales bacterium Y4I] gi|206686777|gb|EDZ47259.1| DNA primase [Rhodobacterales bacterium Y4I] Length = 665 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 219/676 (32%), Positives = 337/676 (49%), Gaps = 44/676 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I IS+++G+ V WD+RK+ KGDYW CPFH EKT SFH D KG Sbjct: 1 MSLPPGFLDELRTRISISDVVGRKVMWDQRKSQPGKGDYWGPCPFHHEKTASFHVEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ F+E+V+ LA AG+ +P DP+ ++K+ +T L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVGFMEAVEILAGEAGMEMPKRDPRAQEKQDRRTLLADV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK + YL RG+ + A++ +++G+APD +L + LR K E Sbjct: 121 MEQAVQFFRLQLKTNAAREAREYLQRRGLTAQALDRWEIGFAPDGWQNLWDALRGKNVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + II AGL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLIIGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A + S +I+ EGYMDV++L + G Q+ V+ LGT Sbjct: 241 LFDKGRSLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEGGFQSSVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW++S ++ DGD GLRAA + IDL L L G + F ++ G+DPD Sbjct: 291 AITENQLQMLWRMSDEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFAIMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A ++ +++P+V +LW+RETE + F++P+ +A L+ L+ I I+D + Sbjct: 351 DMIRSEGPEAVRAVLDQAIPMVKLLWRRETEGKVFDSPERKAALDKSLREKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHS---------------GYGRYWKKNARHRDQKGPSQR 465 R +Y + +++ QLF+ G WK P Sbjct: 411 RKHYGEDVKEMRWQLFRGSRGSSEGGYQQRGGRGGGFRDGARAPWKPGKGFGVIPQPRAT 470 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S + ++REA +L T I PA++ + L ++ + +L L + Sbjct: 471 TRASLVAGADDESFAAMREAVILATAITTPAVIPDFETSLERLQCADPDLALLRDMVLRH 530 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L EEI L L A + + + LA Sbjct: 531 GIDAPERLREEIDWSLGPHALENLFG----LRHVAIIPCLRKPGDTELASMTLAEELAKL 586 Query: 586 KRFRLLSRQKEEIEKQI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + R L + E E+ + AK +A ++ ++V ++ Sbjct: 587 EALRGLDAELAEAEEDLHGLADEALTWRLRQAAEAKNKAVRSENEDKATYDVGKNGARLN 646 Query: 633 SQEAMIEGFGKMSGRL 648 E + FG + R+ Sbjct: 647 RDER--DAFGALLDRI 660 >gi|83309797|ref|YP_420061.1| DNA primase [Magnetospirillum magneticum AMB-1] gi|82944638|dbj|BAE49502.1| DNA primase [Magnetospirillum magneticum AMB-1] Length = 623 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 195/636 (30%), Positives = 310/636 (48%), Gaps = 33/636 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ +L IP+++++ + V R+ ++ CPFH+EKTPSF N+ KG Sbjct: 1 MAFPPQFLDELRARIPVTSVVARRVKLVRKGR-----EHQGLCPFHNEKTPSFTVNEDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CF C GD + F SF E+V++LAA AG+ +P P+ +E+ + L Sbjct: 56 FFHCFGCGAHGDAIGFEMRAGHLSFTEAVEKLAAEAGIEVPKASPEERVREQRRASLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A+ FF L+ + YL RG+ I F+LG+APDSR +L+ L K E Sbjct: 116 LEAASAFFEKHLRGPAGRDGFAYLKNRGLSDDTIARFRLGFAPDSREALKSALMSKECPE 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL ++ A+ +D FR R++FPI RG+VI FG RTL KYLNSP+T Sbjct: 176 SLLIEAGLLKKPESGAS-FDYFRGRVMFPITDRRGRVIGFGARTL-GDGQPKYLNSPDTP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY A ++ R +++VEGYMDV++L QAG V+ LGT Sbjct: 234 LFHKGQTLYGLAHAREMARELNR----------VVVVEGYMDVIALHQAGFAYAVAPLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE Q+ LW+L+P +LC DGD G RA +A++ L PG + F L EDPD Sbjct: 284 AVTEQQIEELWRLAPEPILCLDGDKAGQRAMERALERAFPILKPGQSLRFATLPAPEDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S I+ G A ++ + PLV++ W+ T++R +TP+ RA LE L + I D+ + Sbjct: 344 SLIKARGPAAMAAVLDAAQPLVEVAWRVATQDRPLDTPERRALLEKELSDKAFSIADETV 403 Query: 421 RYYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 RY Y R ++++ F+ G K R R + L Sbjct: 404 RYQYLATFRQKIKESFRPPPRPWTNAGGGKMGGKGFGRFRPDPQAPLKGPDGMLPGVGRP 463 Query: 478 KKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + P +E +L +++HP ++ + L + + + L L + + Sbjct: 464 RPPRPNAGAQEWMMLTLVLDHPRLMDSIGERLGETTFADKTLDNLRRGILKHLGAARDLD 523 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L G+ E+L L + + + + + + R ++ LY R Sbjct: 524 ADGLATYLRTDGYSEILDSLL-DANERRVRALRDDLSTEEARIHWEHVYNLYTR------ 576 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +++ +++ A+ TA S V Q Sbjct: 577 --KDLLADVSEANAELAQGPTAASWSRFEAVKKQQQ 610 >gi|170744800|ref|YP_001773455.1| DNA primase [Methylobacterium sp. 4-46] gi|168199074|gb|ACA21021.1| DNA primase [Methylobacterium sp. 4-46] Length = 627 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 212/633 (33%), Positives = 316/633 (49%), Gaps = 27/633 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP ++++ +P S+++G+ V + ++ PF+ EKTPSF+ ND K Sbjct: 1 MRYPPHLLEEIRARLPASDVVGRKVRLKKAGR-----EWRGLSPFNAEKTPSFYVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CFS GD +FL G SF E+V+RLAA AGV LP + E+ + + + Sbjct: 56 FFHCFSSGKHGDIFTFLQETEGLSFPEAVERLAAEAGVALPAPSRESRDSEERRRGGLEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L R YL RG+ F+LGYAP RY+LR+HL + Sbjct: 116 MELAAAFFEAQLAGRGGARARDYLARRGLSDAVQREFRLGYAPAERYALRDHLAARDVPA 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IE GL+ G++ A YD FR+R+IFPIR RG+VIAFGGR L+ KYLNSPET Sbjct: 176 ELMIELGLIKGGEDVAVPYDHFRDRIIFPIRDLRGRVIAFGGRALAPEAKPKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A + R +I VEGY+DV+++ G V+ LGT Sbjct: 236 LFHKGTVLYNHHAARRAAHDTGR----------VIAVEGYVDVIAMTMGGHPETVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL L+W+++ +LCFDGD G RAAY+A+D+ L L PG + F LL G+DPD Sbjct: 286 ALTEDQLGLMWRMADEPILCFDGDGAGRRAAYRALDVALPGLAPGKSLRFALLPEGQDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A ++++ + PLV++LW RETE +TP+ RA L L+ + I+D+ L Sbjct: 346 DLLRAGGAVALDRVLEGARPLVEVLWSRETEMAPVDTPERRAGLAQRLRELVGQIRDETL 405 Query: 421 RYYYSQAIRDRLQQLFQKY----ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R YY I RL+ + + + R L + L Sbjct: 406 RRYYRDEIEARLRAFGPAPAGGGRRDAAPAFARRGRGQPERPASPRLTARASPLLARSSL 465 Query: 477 SK-KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 S REA ++ L+ HP +L + ++LA + + + + L L E Sbjct: 466 FAGGTSSREALIIGVLVVHPELLAGEAEDLAALDLASADARDLRQALLDHAAEGGPGDAA 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ RL G ++ VR W+ A+ V + +QA+ L++R L Sbjct: 526 ALNTRLERAGLAAAAGRIAAHVRPGDRWALDPHADPVRLEDALRQAVILHRRAGSLH--- 582 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 ++ E+T + L +V ++ Sbjct: 583 ----SELRAAERALAEEETEANFAWLRDVKERL 611 >gi|149202117|ref|ZP_01879090.1| DNA primase [Roseovarius sp. TM1035] gi|149144215|gb|EDM32246.1| DNA primase [Roseovarius sp. TM1035] Length = 649 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 214/602 (35%), Positives = 305/602 (50%), Gaps = 17/602 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S+++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELQNRLSLSHVVGRKVTWDNRKSNPGKGDMWAPCPFHQEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LAA AG+P+P DP+ + K + LI + Sbjct: 61 FYYCFGCHAKGDAIAFVRETENVDFMEAVKILAAEAGMPMPERDPQAQAKADRRGQLIEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L++ YL R + F +G+APD L EHL KG Sbjct: 121 MEQAVKFFGLHLRSGAGAAARDYLKGRKLAEATQAQFDIGFAPDGWQGLWEHLTGKGVPP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ GL + YD FRNR++FPIR +RG+ IAFGGR + + KYLNSPET Sbjct: 181 DMILACGLAKESQKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPSDPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K LYN A K +I+ EGYMDV++L AG V+ LGT Sbjct: 241 LFDKSHTLYNHGPAREASGK----------GQTLIVAEGYMDVIALVAAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL+L+W++SP V+ DGD GLRAAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTEHQLQLMWRISPEPVIALDGDTAGLRAAYRVIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + I +LP+V +LW+RETE R +++P+ RA L+ L+ I I+D + Sbjct: 351 DLLRSEGAGAVQGRIDAALPMVQLLWQRETEGRDYDSPERRAALDKVLREKIMLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y QAI+D QLF S + + + S LV Sbjct: 411 RSHYGQAIKDLRWQLFNP---RRSTGFTPRARGGKWPPPEPARAATKSSLLVAAGGDGTV 467 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +L TLI+ P++ L + + +L +L + V E + R Sbjct: 468 HLREAVVLATLISCPSVAARFEAGLERLECRDPDLARLRDLILRHAVSG----AEGLRAR 523 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L++L A + + + A R + E + Sbjct: 524 IEAEIGSAPLEKLMTLPHVALIPPVRRPGDEELAILTLTEEFAKLTAQRGWMAELSEATE 583 Query: 601 QI 602 I Sbjct: 584 DI 585 >gi|126738767|ref|ZP_01754463.1| DNA primase [Roseobacter sp. SK209-2-6] gi|126719948|gb|EBA16655.1| DNA primase [Roseobacter sp. SK209-2-6] Length = 672 Score = 425 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 216/683 (31%), Positives = 345/683 (50%), Gaps = 51/683 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I IS+++G+ V WD+RK+ KGDYW+ CPFH EKT SFH D KG Sbjct: 1 MSLPPGFLDELRTRISISDVVGRKVMWDQRKSQPGKGDYWSPCPFHHEKTASFHVEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ SF+E+V+ LA AG+ +P DP+ ++K+ +T L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGMEMPKRDPRAQEKQDRRTLLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK YL RG+ A++ +++G+APD +L + LR K E Sbjct: 121 MEQAVQFFRLQLKTGAAGPARDYLQRRGLTPPALDRWEIGFAPDGWQNLWDALRAKNVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + II AGL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLIIAAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A + S +++ EGYMDV++L + G + V+ LGT Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSQLVVAEGYMDVIALSEGGFTSSVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL+++W++S ++ DGD G+RAA + +DL L HL G + F L+ G+DPD Sbjct: 291 AVTENQLQMMWRMSDEPIIALDGDKAGIRAAMRLVDLALPHLQAGKSLRFALMPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ +++P+V +LW+RETE + F++P+ +A L+ L++ I I+D + Sbjct: 351 DLIRSKGPAAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYG----------------------RYWKKNARHRD 458 R +Y + I++ LF+ +G + Sbjct: 411 RKHYGEDIKEMRWTLFRGNRPPGAGGYDGTEGKPGSYKGGNYKGGGFRDGARRPWKGQAA 470 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + P S + S+ +REA +L I+ P I+ E L + + L L Sbjct: 471 AQAPLSTTRSSLVAAADESELARVREAVVLAVAISCPWIIVEFEVNLERMTCADGALAAL 530 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + V+ PE++ +R+CE + L+ L A + ++ R Sbjct: 531 RDQVLRHGVDA----PEQLKERICETLGSQALENLMSLRHVAIIPCLRRPEDLEAARLTL 586 Query: 579 QQALALYKRFRLLSRQKEEIEK------------QIAQVTAKGEAE-KTAILISILHEVH 625 + A + R L+ + E E+ ++ + ++ ++V Sbjct: 587 AEEFAKLEALRGLNAELAEAEEDLSGLADEALTWRLKEAAEARNRAVRSENEDKATYDVG 646 Query: 626 IQIHQIESQEAMIEGFGKMSGRL 648 ++ +E + FG + R+ Sbjct: 647 ENGARLSREER--DAFGALLDRI 667 >gi|302382121|ref|YP_003817944.1| DNA primase [Brevundimonas subvibrioides ATCC 15264] gi|302192749|gb|ADL00321.1| DNA primase [Brevundimonas subvibrioides ATCC 15264] Length = 623 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 193/630 (30%), Positives = 303/630 (48%), Gaps = 19/630 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+++L + S++IG+ V R+ ++ PF EK+PSF ND KG Sbjct: 1 MRFDDRFLEELKARLRPSDVIGRSVKLKRQGR-----EWVGLSPFSKEKSPSFFVNDDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++ FS GD +SFL SF E+V+RLAA AG+ LP DP+ ++E + L Sbjct: 56 FFHDFSSGKHGDVISFLQETERLSFPEAVERLAAEAGMQLPAEDPQAAEREAKKQGLSDW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A +F +L+ + K YL+ RG+ E F LGYAP+ R L+ L Q+G Sbjct: 116 MDLAQKWFAANLRRSTGKAAREYLERRGLPEDQWERFGLGYAPNDREGLKSALVQRGAKP 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++E G+LI + YDRFR+RL+FPI +RG++++FGGR ++ + KYLN PE+ Sbjct: 176 GDLVEMGMLISPEGGGAPYDRFRDRLMFPILDARGRLVSFGGRAMNPDDRAKYLNGPESP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LY A L S+ +I+VEGYMDV++ +AG+ V+ +GT Sbjct: 236 LFHKGATLYGLPEARRIL------GAESKSTQSVIVVEGYMDVIACQRAGLP-AVAPMGT 288 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LLW++S +LCFDGD G RAAY+AI+ L L G F LL G+DPD Sbjct: 289 ALTEDQMALLWRVSSEPILCFDGDGAGQRAAYRAIERALPLLKSGRSFRFALLEGGQDPD 348 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + + E+ P ++L+KRE E +TP+ RA L+ L+ I D+ L Sbjct: 349 DILRDKGAPALRQAMTETRPFAEVLFKREAEVEPLDTPERRAGLKGRLRTAAGAIADKDL 408 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKLSKK 479 Y + + +R LF R + R R P + + + L++ Sbjct: 409 AEQYRRELFERFDALFPSRAQAPQ---RPQQSGGRWRPGPPPKLGQTAEGAQAMQALNRS 465 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 AAL I P + + + +A + + L L L + + + Sbjct: 466 IEPVAAALAHGAIEDPERMDDHLEAIASHGFGDPALDGLAQELVRLRFGGQTLDSAALRR 525 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L G L++++++ +G A + + R + Q R L + Sbjct: 526 HLASSGHDALVREVEKAAAKSGAPFLAANAPLAEARVRWSQGFDALTRVAGLDAALASAK 585 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +A + L + + I Sbjct: 586 S---GADHVFDASAFSRLKAERDALRRAIK 612 >gi|260425557|ref|ZP_05779537.1| DNA primase [Citreicella sp. SE45] gi|260423497|gb|EEX16747.1| DNA primase [Citreicella sp. SE45] Length = 650 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 217/626 (34%), Positives = 327/626 (52%), Gaps = 16/626 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRTSLSQVVGRKVMWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C KGD +SF+ F+E+V+ LA AG+P+P DP+ K+ ++ L + Sbjct: 61 FYYCFGCQAKGDAISFIRESENVEFMEAVEILAREAGMPMPARDPQAAKQADRRSQLSEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L++ YLD RG+D + F+LG+AP+ +L +HLR +G +E Sbjct: 121 MEQAVRWFRMQLRSGGATAARAYLDRRGLDESVRDRFELGFAPEGWQNLWDHLRGQGVAE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL D YD FRNR++FPIR RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ELILGAGLAKPSDRGRAPYDVFRNRIMFPIRDGRGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRNLYNHAPAREAAGK----------GQPLIVAEGYMDVIALSEAGFGASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL+LLW++S ++ DGD GLRAAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTETQLQLLWRISDEPIVALDGDKAGLRAAYRVIDLALPLLQAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A +++ +++P+V +LW+RETE +SF++P+ +A L+ L+ I ++DQ L Sbjct: 351 DLLRAEGPAAVARVLEQAMPMVQLLWRRETEGKSFDSPERKAALDARLREVIKTVQDQGL 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y I+D QLF+ G G+ K A PS + S LV + + Sbjct: 411 RRHYGDEIKDLRWQLFRAQRQPRGGSGKGAAKRA-WNAPAPPSASVRSSLLVSVGEAGET 469 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +L L+++P+ L E + + + + L + L + + + + Sbjct: 470 RLREAVILAVLLSYPSFLTEFEHRIEAMACGDADHAMLRNALLRCMDAEPERVRDMVADA 529 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L R + + R L + S + E E Sbjct: 530 IGPEALESFLA-----ARHLMIVPCLRRQDPEFARMTIIDYLDRIEAAAGRSLEIHEAEA 584 Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626 + ++ + E+ + V Sbjct: 585 DMHELADEVVTERLKLANETYDRVQR 610 >gi|16127279|ref|NP_421843.1| DNA primase [Caulobacter crescentus CB15] gi|221236080|ref|YP_002518517.1| DNA primase [Caulobacter crescentus NA1000] gi|13424695|gb|AAK25011.1| DNA primase [Caulobacter crescentus CB15] gi|220965253|gb|ACL96609.1| DNA primase [Caulobacter crescentus NA1000] Length = 643 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 200/641 (31%), Positives = 325/641 (50%), Gaps = 25/641 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+++L + S+++G+ V R+ +Y PF EK+PSF ND KG Sbjct: 1 MRFDDRFLEELKSRLRPSDVVGKTVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD +SFL +F E+V+RLAA AG+ LP VDP+ ++E+ ++ L Sbjct: 56 FYHCFSSGKHGDIISFLQETERLTFAEAVERLAAEAGMSLPEVDPRAAREEQKRSSLGDW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ + YL++RG+ F++G+AP++R L+++L KG Sbjct: 116 MELAAAWFESELRRPVGQTARAYLEKRGLPESEWSRFRIGFAPNNRTGLKDYLIAKGAKP 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++AG+LI ++ YDRFR+R+IFPI SRG+V++FGGR + KYLN PET Sbjct: 176 GDLVDAGVLIAPEDGGAPYDRFRDRIIFPIADSRGKVVSFGGRAMDPAARAKYLNGPETS 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY F A L +++VEGYMDV++ +AGV V+++GT Sbjct: 236 LFHKGRVLYGLFEARKILH----AGQSGGEKPPMVVVEGYMDVIACQRAGVP-AVAAMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LW+L P LCFDGD G RAA +AID L L PG F + G+DPD Sbjct: 291 ALTEEQMEGLWRLHPTPTLCFDGDKAGKRAADRAIDRALPLLKPGRSFLFSMPVGGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + + ++ P V L++RE E F+TP++R L++ L+ I D+ L Sbjct: 351 DVLREQGPAALKAQVSDTKPFVQALFEREKEVEPFDTPEQRTNLKVRLRTLAATIADKDL 410 Query: 421 RYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRL------MQSSLV 472 + Y + + DRL ++ ++ + S GR + + P + + Sbjct: 411 AHAYKEELLDRLDEMRAARRVKADASDAGRALSRQRWDNSPRRPWGKPRLEGATAEGRQA 470 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L + P AALL+ I P ++ ++ + L + + + L + L + +E + Sbjct: 471 AAALHQAPRPFSAALLIAAIRDPKVVDDRIEVLMNQGFGDERLDAIAHELVNLRLEADHV 530 Query: 533 LPEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + RL G+ E L++ V+ + + ++ +R + QA L R Sbjct: 531 ETGLLRGRLASAGYDEGVLAALERAAAHVKALDVAQSAAQSPQEAIRVLWSQAFDLLLRL 590 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 L R ++ + +A + + L + V I Sbjct: 591 TALERAVDDAKTDLAD---DSDFQTLLRLKTERDAVKRLIE 628 >gi|254440883|ref|ZP_05054376.1| DNA primase catalytic core, N-terminal domain family [Octadecabacter antarcticus 307] gi|198250961|gb|EDY75276.1| DNA primase catalytic core, N-terminal domain family [Octadecabacter antarcticus 307] Length = 654 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 208/621 (33%), Positives = 328/621 (52%), Gaps = 15/621 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + I ++G+ V WD+RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRTRLSIGQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F+E+V+ LA AG+P+P DP+ + K +T L + Sbjct: 61 YYYCFGCHAKGDAISFVRETENVGFMEAVEILAVEAGMPVPKRDPQAQAKSDRRTLLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ LK YL RG+ + A+E +++G AP +L +HL KG +E Sbjct: 121 MEQAVQFYRLQLKTGAGAEARDYLVGRGLSAAALERWEIGLAPQGWQNLWDHLTGKGVAE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL ++ YD FR+R++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILGAGLGKPSNSGKKPYDTFRHRIMFPIRDARGRAIAFGGRAMDPSDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++L+NF A K +++ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRSLFNFGPAREAAGK----------GLPLLVAEGYMDVIALVEAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL+++W+++P V+ DGD G RAA + IDL L L G V F ++ G+DPD Sbjct: 291 AVTETQLQMMWRIAPEPVITLDGDVAGQRAAMRVIDLALPLLEAGQSVRFAMMPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G A + + +LP+V +LW+RE E ++F++P+ +A L+ L+ I IKD + Sbjct: 351 DLLKSAGAGAMRERVDGALPMVQLLWQREVEGKNFDSPERKAALDKSLREKIMLIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y QAI+D +LF G ++ + K P+Q ++SL+ G S + Sbjct: 411 RSHYGQAIKDMRWELFGNNRKAFGGGSTGQQRGKWLPKGAKLPAQMSTKASLLGGGPSSE 470 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-IH 538 LREA +L LI +P IL + L + ++ L L E + Sbjct: 471 DHLREAVILAVLIRNPLILVDFNGALERMICSGPDIAMLRDALLKV---DPQADLEAVLS 527 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + +L Q + A + + + + + + A + EE+ Sbjct: 528 AEIGDGPLVKLFAQAHVTITPAVRRPDNGDLARMCLAEEFAKLTARRGHANEVQDAVEEM 587 Query: 599 EKQIAQVTAKGEAEKTAILIS 619 +A ++ ++ Sbjct: 588 NSDVADERLTTRLAQSIAAMN 608 >gi|163796953|ref|ZP_02190909.1| DNA primase [alpha proteobacterium BAL199] gi|159177700|gb|EDP62251.1| DNA primase [alpha proteobacterium BAL199] Length = 616 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 187/625 (29%), Positives = 308/625 (49%), Gaps = 20/625 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ F+ +L + +S+++G+ R+ ++ + CPFH + PS + D KG Sbjct: 1 MALPQGFLDELRDRVSVSSMVGRRHALIRKGR-----EFVSLCPFHSDSKPSLNIVDDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+C GD + F+ G F+E++++LA +AG+ +P P+ ++ + L + Sbjct: 56 FYHCFACGAHGDVIKFVMETEGLGFMEAIEQLAGVAGLEVPKETPEERQRAERTRSLQEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A ++ L+ + YL ERG+ I F+LG+AP+ R +L+ ++ +G Sbjct: 116 VDLACRWYERQLRTSIGDAGLRYLRERGLSEETIARFRLGWAPEDRKALQRAMKAEGVEV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL + + + D R R++FPI RG+VIAFGGR L KYLNSP+T Sbjct: 176 DILVEAGL-VKRYDDGETGDYMRGRVLFPITDRRGKVIAFGGRVL-GDGQPKYLNSPDTP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY A K S +++ EGYMDV++L Q G+ V+ LGT Sbjct: 234 LFHKGRVLYGLAQAREAAHK----------SGTLVVTEGYMDVIALAQVGIP-SVAPLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LWK+ P V+CFDGD G RAA +A D L L PG+ + F++L GEDPD Sbjct: 283 ALTEDQIAELWKVVPEPVVCFDGDTAGQRAATRACDRALPMLTPGHSLRFIVLPEGEDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S R G + F +L+ + P+VD LW E + +TP+ RA+ ++ I I D+ + Sbjct: 343 SLTRRDGPSGFRRLLDAAEPMVDRLWTAEATSGPVDTPERRADFWRRVRERIRVIADRTV 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + YS I R++ + G G + + P S + ++ Sbjct: 403 QQSYSDEIETRIEAMRPSRQNRSDGRGSAGRGTFKGGKWTPPPVEPPGSRASRARVDTAL 462 Query: 481 SLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 R+ +L T+I+HP +L E + LA + + L KL + + Sbjct: 463 GQRQQQIILATVIHHPGLLDELGETLAHLELGDQFLDKLRREILEITEADPDLDAAGLTD 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L G+ + + L + A A + R G + +A R R L RQ E Sbjct: 523 HLKALGYSDTVNGLLGADSLSHAAFARPSATHSEARAGLIELVARVGRGR-LERQLAEAR 581 Query: 600 KQIAQVTAKGEAEKTAILISILHEV 624 + + + + ++ L L ++ Sbjct: 582 RIAEESMTEADMDRMMGLRKALQQI 606 >gi|89055940|ref|YP_511391.1| DNA primase [Jannaschia sp. CCS1] gi|88865489|gb|ABD56366.1| DNA primase [Jannaschia sp. CCS1] Length = 646 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 202/645 (31%), Positives = 312/645 (48%), Gaps = 20/645 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I+ ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRTRTSIAQVVGRKVIWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C KGD F+ F+E+VQ LA AG+ +P DP+ ++K T L ++ Sbjct: 61 FYYCFGCQAKGDMFKFVQETENVGFMEAVQILAGEAGMQMPARDPQAQEKADKATQLAKV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A F LK YL+ RG+D ++ F++G+AP+ R S + L KGF+ Sbjct: 121 TEAAVQHFRLQLKTQAASDARAYLEGRGMDQATLDRFEIGFAPNGRNSTHQALVDKGFAV 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I A + D+ YD FR+R+IFPIR +RG+ + FGGR + KYLNS ET Sbjct: 181 DDITAANVSTKPDDGGAPYDAFRDRIIFPIRDARGRCLGFGGRAMDPNARAKYLNSRETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LYN A K +I+ EGYMDV++L AG + V+ LGT Sbjct: 241 LFDKGRALYNHGPAREAAGK----------GQPLIVAEGYMDVIALVGAGFEAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W+++ ++ DGD GLRAA + +DL + L G + FV+L G+DPD Sbjct: 291 AVTEDQLRLMWRITDEPIIALDGDKAGLRAAMRLVDLAMPLLEGGKSLRFVILPEGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + L+ ++ P+V +LW+RETE + F++P+ R+ L+ L+ + I D L Sbjct: 351 DLIRAQGPGAMQALLDKAEPMVTLLWRRETEGQVFDSPERRSALDGRLRQALQRIGDPGL 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y AI + + LF+ R K + + P + ++ + Sbjct: 411 RRHYGDAISELRRALFRPQQKPWQPGKRGPWKGRGFAEAQAP----LAATRARVGALSGE 466 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 +LR ++ T I P ++ +L + + + +L + L + + Sbjct: 467 TLRTGLIVATCIRFPDLIDVFEPQLDRMNPRDPDHARLTAHLLRT----QNREAATLLDE 522 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L+ L R A + ++ A R + + E + Sbjct: 523 INASPLAPALESLLRLSHLAITPFLIGAGDRARAEDCLEEEFARLTAARAIEDEMVEASQ 582 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + +G+ + L Q E E FG+ S Sbjct: 583 DVEAAPDEGDPALAYRMKEALRG--KHAAQSPKGEDNAEQFGETS 625 >gi|114764809|ref|ZP_01443991.1| DNA primase [Pelagibaca bermudensis HTCC2601] gi|114542695|gb|EAU45718.1| DNA primase [Roseovarius sp. HTCC2601] Length = 653 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 213/631 (33%), Positives = 321/631 (50%), Gaps = 26/631 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRTSLVQVVGRKVMWDNRKSNQAKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ F+E+++ LA AG+P+P DP+ KK + L + Sbjct: 61 FYYCFGCHAKGDAISFVRESENVEFMEAIEILAREAGMPMPARDPQAAKKADRREQLSEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L+ YLD RG+ + F++G+AP+ +L +HLR +G +E Sbjct: 121 MEQAVRFFRMQLRAGAATEARAYLDRRGLKEDVRDRFEIGFAPEGWQNLWDHLRGQGVAE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL D YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILGAGLAKASDRGKAPYDVFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRNLYNHAPAREAAGK----------GQPLIVAEGYMDVIALSEAGFGASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE Q++LLW+++ ++ DGD GLRAAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTETQMQLLWRITDEPIVALDGDKAGLRAAYRVIDLALPLLQAGKTLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A K++ ++P+V +LW+RETE + F++P+ +A L+ L++ + I+D L Sbjct: 351 DLLRAEGAGAVSKVLEGAMPMVQLLWRRETEGKVFDSPERKAALDARLRDVLRQIQDPGL 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y I++ QLF+ + G G PS + S LV + + Sbjct: 411 RRHYGDEIKELRFQLFRPQRPKRAFGGGGAGGPRRAWNAPAPPSASVKSSLLVAAGDTAE 470 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LREA +L L++ P ++ E Q L + + L L + + L EE Sbjct: 471 NELREAVILAVLLSTPELIAEFEQGLEMLNCTDPVRASLRDVLLRNNADSAAALREEAEY 530 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--------------- 584 R+ LL V E + V + + A Sbjct: 531 RIGPEPLENLLAARHVAVVPCVRRPGDIELARMTVAEELSKITARSGAAAEIAEAEEDLE 590 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + L+ + + K + + + + Sbjct: 591 HLADEALTWRLAQAAKARNEAVLRKDEGEMD 621 >gi|254459667|ref|ZP_05073083.1| DNA primase [Rhodobacterales bacterium HTCC2083] gi|206676256|gb|EDZ40743.1| DNA primase [Rhodobacteraceae bacterium HTCC2083] Length = 654 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 206/605 (34%), Positives = 318/605 (52%), Gaps = 17/605 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRTRLSLSQVVGRKVMWDSRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C KGD +SF+ F+E+++ LA AG+ +P DP+ ++K +T+L+ + Sbjct: 61 FYYCFGCQAKGDAISFVRETENVGFMEAIEILAGEAGLEVPKQDPRAQQKADERTELVDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L+ YLD RG+ E F++G+APD+ L +HL KG S Sbjct: 121 MEQAVQFFRLQLRTGNASEARGYLDRRGLKEATQERFEIGFAPDAWQGLWDHLSGKGVSA 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EKI+ AGL YD FRNR+IFPIR +RG+ AFGGR + ++ KYLNSPET+ Sbjct: 181 EKILAAGLAKPSSKGGKPYDTFRNRIIFPIRDARGRCTAFGGRAMDPNDNAKYLNSPETL 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K + +I+ EGYMDV++L + G V+ LGT Sbjct: 241 LFDKGRSLYNHGPAREAAGK----------GAPLIVAEGYMDVIALAEGGFGACVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QL LLW++S ++ DGD GLRAA + IDL L L G + F L+ G+DPD Sbjct: 291 AITDNQLHLLWRISDEPIIALDGDTAGLRAAQRLIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A +++I ++P+V +LW +E E ++F++P+ +A L+ L+ + I+D + Sbjct: 351 DLIRAEGPEAVQRVIDGAMPMVQLLWDKEIEGKNFDSPERKAALDKTLREKLMLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQK---YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R +Y QAI+D QLF+ + + + + + R+ + S L Sbjct: 411 RSHYGQAIKDMRWQLFRAGSGGSSSKKPWAKGKRGDWRNPPPAPATASAKASLLAGAGED 470 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + +REA ++ +LI P ++ E +L ++ E + + L E+I Sbjct: 471 TQRQMREAVIIASLICTPDVVAEFEGQLEELHVSTQEHRAFLDLILVHSSHGPEVLREKI 530 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 LL + E ++ + LA + + LS + E Sbjct: 531 VDARGTDSLENLLGAGHVAITPCVRRPGDIEMAMM----AISEELAKLEAEQGLSAEVAE 586 Query: 598 IEKQI 602 + + Sbjct: 587 AAEDL 591 >gi|295690892|ref|YP_003594585.1| DNA primase [Caulobacter segnis ATCC 21756] gi|295432795|gb|ADG11967.1| DNA primase [Caulobacter segnis ATCC 21756] Length = 642 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 200/637 (31%), Positives = 329/637 (51%), Gaps = 24/637 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+++L + S+++G+ V R+ +Y PF EK+PSF ND KG Sbjct: 1 MRFDDRFLEELKSRLRPSDVVGKTVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD +SFL +F E+V+RLAA AG+ LP VDP+ ++E+ ++ L Sbjct: 56 FYHCFSSGKHGDIISFLQETERLTFAEAVERLAAEAGMSLPEVDPRAAREEQKRSSLGDW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F L+ + YL++RG+ F++G+AP++R L+++L KG Sbjct: 116 MELAAAWFESELRRPVGQAARAYLEKRGLPESEWSRFRIGFAPNNRTGLKDYLIAKGAKP 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++AG+LI ++ YDRFR+R+IFPI SRG+V++FGGR + KYLN PET Sbjct: 176 GDLVDAGVLIAPEDGGQPYDRFRDRIIFPIADSRGKVVSFGGRAMDPAARAKYLNGPETS 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY F A L +++VEGYMDV++ +AG+ V+++GT Sbjct: 236 LFHKGRVLYGLFEARKILH----AGQSGGEKPPMVVVEGYMDVIACQRAGIP-AVAAMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LW+L P LCFDGD G RAA +AID L L PG F + G+DPD Sbjct: 291 ALTEEQMEGLWRLHPTPTLCFDGDKAGRRAADRAIDRALPLLKPGRSFLFSMPVGGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + I + P V+ L++RE E F+TP++R L++ L+ I D+ L Sbjct: 351 DVLREQGPAALKAQISNTKPFVEALFERERELEPFDTPEQRTNLKVRLRTLAATIADKDL 410 Query: 421 RYYYSQAIRDRLQQL--FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--- 475 + Y + + DRL ++ ++ + S GR + + + ++ S +G+ Sbjct: 411 AHAYKEELLDRLDEMRAARRVKADASDAGRALSRQRWDNTPRRGGKGRLEGSTAEGRQAA 470 Query: 476 --LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L + P AALL+ I P ++ ++ + L + + + L + L + ++ + Sbjct: 471 AALQQAPRPFSAALLIAAIRDPKVVDDRIEVLMNQGFGDQRLDAIAQELVNLRMDADHVE 530 Query: 534 PEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + RL G+ + L++ V+ + ++ +R + QA L R Sbjct: 531 AGMVRGRLATAGYDDATLAALERSAAHVKALDAAQSAAQSPEDAIRGLWSQAFDLLIRLT 590 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 L R +E + +A +G++ L + V Sbjct: 591 ALERAVDEAKADLA---HEGDSHTLFRLKTERDAVKR 624 >gi|56696626|ref|YP_166987.1| DNA primase [Ruegeria pomeroyi DSS-3] gi|56678363|gb|AAV95029.1| DNA primase [Ruegeria pomeroyi DSS-3] Length = 649 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 207/634 (32%), Positives = 327/634 (51%), Gaps = 21/634 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRSRLSLTQVVGRKVMWDMRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C KGD L+F+ F+E+V+ LA AG+ +P DP+ ++K+ ++ L + Sbjct: 61 FYYCFGCQAKGDALTFVQQTENVGFMEAVEILAREAGMTMPARDPRAQEKQDHRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF +L YL RG+ + A+E +++G+APD L +HLR KG E Sbjct: 121 MEQAVRFFRLNLSAGGGGAARDYLARRGLSAQALERWEIGFAPDGWQGLWDHLRGKGVGE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET+ Sbjct: 181 ELITGAGLAKPSTKGGKPYDTFRNRIMFPIRDARGRCIAFGGRAMDPKDNAKYLNSPETL 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++L+N A +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRSLFNHGPARTAA----------GQGQPLIVAEGYMDVIALAEAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL+++W+++ ++ DGD GLRAA + +DL L L G V F ++ G+DPD Sbjct: 291 AVTEHQLQMIWRIADEPIVALDGDTAGLRAALRVVDLALPLLEAGKSVRFAIMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ ++ P+V +LW+RETE R F++P+ +A L+ L+ I I+D + Sbjct: 351 DLIRAEGPAAMQSVLDQARPMVQLLWQRETEGRVFDSPERKAALDKALREKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y Q I+D QLF+ + + R + S L + + Sbjct: 411 RAHYGQEIKDLRWQLFRPQRGTKQPW---QPRGGRGAAPAAATAGTRASLLASSGEAAQI 467 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LREA +L I PA++ L + + +L L ++ PE + +R Sbjct: 468 RLREAVILAAAIATPAVIVRFEHALERLDCHDPDLAMLRDLALRIGID----DPEGLRER 523 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + E L+ L + ++ + LA + R + EE + Sbjct: 524 IDQTLGPEALENLYALRHVQVIPCMRRPGDVDLAEMTLAEELAKIQALRGYDAEIEEARE 583 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 IA+ + + A + + +++ Sbjct: 584 DIAEDADESLTWRVAQAAEE----KQRAARSQNE 613 >gi|254486658|ref|ZP_05099863.1| DNA primase [Roseobacter sp. GAI101] gi|214043527|gb|EEB84165.1| DNA primase [Roseobacter sp. GAI101] Length = 650 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 217/634 (34%), Positives = 334/634 (52%), Gaps = 22/634 (3%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +L +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KGFYYCF CH Sbjct: 2 DELRSRASLSQVVGRKVMWDARKSNQGKGDMWAPCPFHQEKSASFHVDDRKGFYYCFGCH 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 KGD +SF+ SF+E+V+ LA AG+P+P DP+ ++K +T L +++E A FF Sbjct: 62 AKGDAISFVRETENVSFMEAVEILAREAGMPVPQQDPRAQEKADKRTQLAQVMEQAVQFF 121 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L+ YL RG+++ A+E +++G+A D L +HL+ KG +E I AGL Sbjct: 122 RLQLQTGAAGAARDYLARRGLNAQALERWEIGFAADQWQGLWDHLKAKGVEDELIFGAGL 181 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 YD FR R+IFPIR +RG+ IAFGGR + ++ KYLNSPET LF KG++L Sbjct: 182 AKPSTKGGRPYDTFRGRIIFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSL 241 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 YN A +++ EGYMDV++L QAG V+ LGTA+TE QL+ Sbjct: 242 YNVKDARTAA----------GQGQPLLVAEGYMDVIALVQAGFGAAVAPLGTAITESQLQ 291 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +LW++SP ++ DGD G RAA + IDL L L G + F ++ G+DPD +R +G Sbjct: 292 MLWRISPEPIITLDGDTAGQRAALRLIDLALPLLEAGQSLRFAVMPEGQDPDDLLRAHGA 351 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 A +KL+ ++P+V +LW+RET+ R F++P+ +A L+ L+ I I+D +R +Y Q I Sbjct: 352 PALQKLLDNAMPMVRLLWQRETDGRVFDSPERKAALDKSLREKIMLIRDPSIRSHYGQEI 411 Query: 429 RDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLV-KGKLSKKPSLREA 485 +D QLF+ + + R + + +GPS S LV L LREA Sbjct: 412 KDLRYQLFRPQQAKKAFAPGARSAGQGRWNAAPQGPSPSAKSSILVTAAGLGATEHLREA 471 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 +L L+ P +++E +A + + + + + + PE +H+++C+ Sbjct: 472 VILCALLGCPQLVEEFETGVAAMACQDPDHAVIRDLMLRYA----HRSPEALHEKICDAL 527 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 + L+ + Q A NI R + L + R L + + + ++ V Sbjct: 528 GAQALENMTTQRHVAITPCIRNPGNIEMTRMTVAEELGKLEAVRGLDAEIADAVEDLSGV 587 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +G + + + Q QE E Sbjct: 588 ADEGLTWRLSEAAR-----NADRAQRSGQEDTAE 616 >gi|312113101|ref|YP_004010697.1| DNA primase [Rhodomicrobium vannielii ATCC 17100] gi|311218230|gb|ADP69598.1| DNA primase [Rhodomicrobium vannielii ATCC 17100] Length = 627 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 206/646 (31%), Positives = 333/646 (51%), Gaps = 40/646 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP D + ++ +P+S ++ + V R+ +Y PF E++PSF ND KG Sbjct: 1 MRYPPDLLDEIRSRLPVSRVVERRVKLKRQGR-----EYIGLSPFKTERSPSFTVNDHKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ GD +FL + G SF E+V+RLAA AGV LP +P KE ++ + Sbjct: 56 FYHCFATGEHGDVFTFLMKVEGLSFPEAVERLAAEAGVMLPEPEPVDAVKESHESRVRAA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E FF +L + YL++RG+ + + F+LGYAPDS+ L++HL KGF+ Sbjct: 116 LEETCRFFEVALASLDGMAARAYLEKRGVGAAEVAAFRLGYAPDSKTRLKQHLSAKGFTL 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ +AGLLI G++ YDRFR RLIFPI ++ +VIAFGGR L + KYLNSPET+ Sbjct: 176 AEMEDAGLLIHGEDIPVPYDRFRGRLIFPITDAKRRVIAFGGRALQPDQQPKYLNSPETL 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A + + +IL EGYMDV++L + G N V+ LGT Sbjct: 236 LFHKGHVLFNHAAARDASK----------VERAVILAEGYMDVIALARGGFPNAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QLRLLW +SP LCFDGD G +AA++A+D L L PG + F L G DPD Sbjct: 286 ALTADQLRLLWAMSPLPTLCFDGDSAGRKAAHRALDTALPFLEPGRSLQFAFLPEGRDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + A KL+ E LP +D+LW RE E + +TP++RA E L I+ + L Sbjct: 346 DMVSGGARDALAKLLAEPLPFIDVLWSREAEKHALDTPEQRASFEARLTEAAQKIEHKSL 405 Query: 421 RYYYSQAIRDRLQQL-----------------FQKYITEHSGYGRYWKKNARHRDQKGPS 463 R++Y R+RL+ + + + +G R + A R Sbjct: 406 RFHYMAGFRERLRGIGHKSGGLPRPRPDAESWRARSMLAPTGGARKPRAPAGGRSMLPQR 465 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + SS + + + REA ++ ++ HP ++ E +E+A I + + + ++ + + Sbjct: 466 TSELLSSPLTQATAPVTAPREAVIISAILAHPWLIDEHMEEIARIPFIDPDCNRIRNAVL 525 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + +++ + L + G+ L++LD+ +A V++G++ + Sbjct: 526 TVHQFDESLDNKKLLEHLSKEGYEAELERLDKACAHKADPHFAPDAEREQVQEGWRHVMM 585 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 L+ + + + + ++ ++++ L V Q+ Sbjct: 586 LHDKAG--------VPSSLLEAESEWMSDQSDENSVRLIAVKQQVE 623 >gi|126730241|ref|ZP_01746052.1| DNA primase [Sagittula stellata E-37] gi|126708974|gb|EBA08029.1| DNA primase [Sagittula stellata E-37] Length = 675 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 214/653 (32%), Positives = 333/653 (50%), Gaps = 45/653 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ ++ + +++++G+ V WD+RK+ KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPTGFLDEIRNRLSLADVVGRKVLWDKRKSQPGKGDLWAPCPFHHEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F+E+++ LA AG+ +P DP+ ++K +T L + Sbjct: 61 YYYCFGCHEKGDAISFVQKTENVGFMEAIEILATEAGMEMPARDPQAKQKADRRTILGEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK YL +RG+D+ E F++G+AP +LR L KG S Sbjct: 121 MEQAVQFFRFQLKTQAATDARAYLAKRGLDAGTQERFEIGFAPAGWDNLRLALTGKGVSV 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++ GL D YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 EHLVACGLSKTSDKGREPYDVFRNRIMFPIRDARGRCIAFGGRAMDPDDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K +NLYN A +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKSRNLYNLRAAREA----------TGRGQPLVVAEGYMDVIALSEAGFKGAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL +W+LSP ++ DGD GLRAAY+ IDL L L G + F L+ G+DPD Sbjct: 291 AVTENQLHAMWRLSPEPIIALDGDKAGLRAAYRVIDLALPLLEAGKGLRFALMPDGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + + +LP+VD+LW++ETE RSF++P+ RA L+ L+ + +KD L Sbjct: 351 DLIRSDGPDAVQTCLDAALPMVDLLWQQETEGRSFDSPERRAALDKVLRERVQRVKDPSL 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE------------------------HSGYGRYWKKNARH 456 R +Y +A+R+ L +L+ + + SG G+ + + Sbjct: 411 RRHYGEAVRELLDKLYNRAGVQPAEPWNGGNGGGFSGGFSGGFAGGFSGKGKGARGRRKW 470 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + PS S LV + +R+ +L L +HP +++ +L + + +L Sbjct: 471 NAPEPPSPTAKASMLVARGEDAEVVMRQEIVLAILYHHPTLIEAFDGQLEKLTPRDPDLA 530 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 L L ++ L + +R+ LL A + ++ R Sbjct: 531 ALRDVLLD-MADRPERLADAAMERIGAGWLETLLA----ARHIAVVPCIRSQGAKDLARM 585 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHE 623 + LA + + + E E+ + + + EA + I L + Sbjct: 586 TVAEELAKLEAYHGWQAELREAEEDLDDLADEALTWRLAEAARARSAIGRLKD 638 >gi|302389495|ref|YP_003825316.1| DNA primase [Thermosediminibacter oceani DSM 16646] gi|302200123|gb|ADL07693.1| DNA primase [Thermosediminibacter oceani DSM 16646] Length = 610 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 183/637 (28%), Positives = 286/637 (44%), Gaps = 39/637 (6%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ YP + I+++ I ++ YV +R N Y CPFH EKTPSF + K Sbjct: 1 MSLYPEELIREVQNRADIVEIVSDYVSLKKRGEN-----YVGLCPFHSEKTPSFTISPKK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDL 117 +YCF C G+ SFL +F E+V+ LA GV LP K+ + K + ++ Sbjct: 56 QLFYCFGCGTGGNIFSFLMKKENWTFPEAVRWLAERVGVRLPEEGTWGKVSEAFKQKREI 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + +A +FFH +L K A KR YL RGI S +E F LGYAP L +R K Sbjct: 116 LEINRLAAEFFHQNLIKTAEGKRAREYLANRGITSETVEKFFLGYAPPRWDGLIRFMRSK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G ++ +++AGL+I + YDRFR+R+IFPI+ G + FGGR L +GE KYLNS Sbjct: 176 GVRDDSLLKAGLVIPRSDGKGYYDRFRDRVIFPIKDITGNTVGFGGRILGEGEP-KYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LY S +ILVEGYMD +SL Q G V+ Sbjct: 235 PETTVFTKREQLYGLPMIKK-------------GGSNLILVEGYMDCISLHQNGFTQTVA 281 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+LTE Q ++L + S +++ +D D G A + I++ + G +V + L G Sbjct: 282 SLGTSLTEQQAKILKRYSEEVIIAYDADTAGQSATLRGIEI---LVKEGLKVRVLSLPEG 338 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD FIR GK AF + + + VD T D + + + + + I+ Sbjct: 339 KDPDEFIRTRGKDAFAEQLSSARNFVDYKLDLAGRGLDLKTRDGKIKFIKNAISVLAGIE 398 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 ++ R Y Q + + L Q E + K R L + K Sbjct: 399 NRVERELYVQKLSEELNIPRQALYEEINKIIDRTTLPNIGSKYKNSQLRDNNKELTRFKA 458 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E +L +I + + + L + + + +K+ +F + P Sbjct: 459 LSGVRKAERDILRMMIEDDSARDKIMKNLTPNNFVDTKHRKIAEMIFEMVNRNEVVTPNG 518 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I +L + E +L + D+ AL + L + Sbjct: 519 ISIKLKDD--QETAAELANIL-----------METADIENSMVDALINRVKENYLKLAIK 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +I+ +I Q GE +K L++ H + ++I Q++ Sbjct: 566 KIKNEINQAEKIGEVKKAFSLLNTYHRLKLEIEQLKR 602 >gi|86137898|ref|ZP_01056474.1| DNA primase [Roseobacter sp. MED193] gi|85825490|gb|EAQ45689.1| DNA primase [Roseobacter sp. MED193] Length = 676 Score = 411 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 218/687 (31%), Positives = 350/687 (50%), Gaps = 55/687 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ F+ +L I IS+++G+ V WD+RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLTPGFMDELRSRISISDVVGRKVMWDQRKSNVGKGDLWAPCPFHHEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF C KGD L F+ F+E+V+ LA AG+ +P DPK ++K+ +T LI + Sbjct: 61 YYYCFGCQAKGDALKFVQETENVGFMEAVEILAREAGMEMPARDPKAQQKQDRRTQLIEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK YL +RG+ A+E +++G APD +L +HLR K E Sbjct: 121 MEQAVQFFRLQLKTNNASMARSYLQKRGLTPPALERWEIGLAPDGWQNLWDHLRGKNVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL +YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ELIMAAGLAKPSTKGGRAYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN + +I+ EGYMDV++L + G + V+ LGT Sbjct: 241 LFDKGRSLYNH----------APARAAAGRGTPLIVAEGYMDVIALSEGGFPSSVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL+L+W+++ ++ DGD GLRAA + IDL L L G + F ++ G+DPD Sbjct: 291 AVTETQLQLMWRMADEPIIALDGDTAGLRAAMRVIDLALPLLQAGKSLRFAIMPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G A + ++ +++P+V +LW+RETE + F++P+ +A L+ L+ I I+D + Sbjct: 351 DLIKSKGPEAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALREKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------------HSGYGRYWKKNAR 455 R +Y + I+D +LF+ E SG+G +K + Sbjct: 411 RKHYGEDIKDLRWELFRGSRPEGRDRDFDTGGSGEGWKGGNSWKQGRKSGFGDGGRKPWK 470 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNE 514 ++ +SSLV + + REA +L I+ P ++ E L ++ + E Sbjct: 471 GQNISPAPLASTRSSLVAAADDAEIARTREAVVLAVAISTPDMIAEFEGNLERMQCADAE 530 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L +L + ++ P ++ RL E + L+ L A + ++ Sbjct: 531 LGRLRDQVLRFGID----TPSDLKTRLRENLGAQALENLMALRHVAIIPCLRRPSDTEAA 586 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEK------------QIAQVTAKGEAEKTAILISILH 622 RQ + A + + L + E E+ ++ Q + + Sbjct: 587 RQTLAEEFAKLEAMQGLDAELAEAEEDLIGLADEALTWRLKQAAEARNRAVRSENEDKAN 646 Query: 623 -EVHIQIHQIESQEAMIEGFGKMSGRL 648 +V +++ +E ++ FG + R+ Sbjct: 647 FDVGENGARLDREE--LDAFGALLDRI 671 >gi|259416280|ref|ZP_05740200.1| DNA primase [Silicibacter sp. TrichCH4B] gi|259347719|gb|EEW59496.1| DNA primase [Silicibacter sp. TrichCH4B] Length = 669 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 214/667 (32%), Positives = 332/667 (49%), Gaps = 37/667 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + +S+++G+ V WD+RK+ KGD W+ CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRVSLSDVVGRKVMWDQRKSQPGKGDMWSPCPFHHEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ SF+E+V+ LA AG+ +P DPK +K+ +T L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGLEMPKRDPKAAEKQDRRTQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F LK YL RG+D A++ +++G+APD +L + L+ K ++ Sbjct: 121 MEQAVHYFRLQLKTQAASEARAYLARRGLDPAALDRWEIGFAPDGWQNLWDALKGKDVAD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL + YD FRNR++FPIR +RG+ IAFGGR + +S KYLNSPET Sbjct: 181 DLILGAGLAKPSNKGGKPYDVFRNRIMFPIRDARGRAIAFGGRAMDPNDSAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A + S +I+ EGYMDV++L +AG Q+ V+ LGT Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEAGFQSAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QL LLW++S V+ DGD GLRAA + ID+ L L G + F ++ G+DPD Sbjct: 291 AVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEAGKSLRFAIMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ +++P+V +LW+RETE R F++P+ +A L+ L+ I I+D + Sbjct: 351 DLIRAEGPEAVQTVLDQAIPMVQLLWRRETEGRVFDSPERKAALDKSLREKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE-------------------HSGYGRYWKKNARHRDQKG 461 R +Y++ I++ QLF+ G Sbjct: 411 RLHYAEDIKELRFQLFRGQRGGSGQGGTGYGQRYGGYKSGSRVQGGFRDGSRMPWGAPPP 470 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P S + + +REA +L T I P ++ E L ++ + + L Sbjct: 471 PRSTTRASMVASSEEQDFARVREAVILATAITTPTVIPEFEINLERMQCQDMDHAHLRDL 530 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + ++ L +EI L LL A ++ + Sbjct: 531 VLRYGIDAPERLRDEIAYALGPDALENLLS----LRHVAISPCVRKPGDLDMASLTLAEE 586 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 A + L+ + E E+ + + T L E + + E+++ Sbjct: 587 FAKLESIAGLNAELAEAEEDL---DGLADEALTWRL-RQAAEARNRAVRSENEDKATYDV 642 Query: 642 GKMSGRL 648 G+ RL Sbjct: 643 GENGARL 649 >gi|99081982|ref|YP_614136.1| DNA primase [Ruegeria sp. TM1040] gi|99038262|gb|ABF64874.1| DNA primase [Ruegeria sp. TM1040] Length = 669 Score = 410 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 216/667 (32%), Positives = 333/667 (49%), Gaps = 37/667 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I +S+++G+ V WD+RK+ KGD W+ CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRISLSDVVGRKVMWDQRKSQPGKGDMWSPCPFHHEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ SF+E+V+ LA AG+ +P DPK +K+ +T L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVSFMEAVEILAGEAGLEMPKRDPKAAEKQDRRTQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F LK YL RG+D+ A++ +++G+APD +L + L+ K ++ Sbjct: 121 MEQAVKYFRLQLKTQAASEARAYLARRGLDAAALDRWEIGFAPDGWQNLWDALKGKDIAD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+ AGL + YD FRNR++FPIR++RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 DLILGAGLAKPSNKGKKPYDVFRNRIMFPIRNARGRAIAFGGRAMDPNDNAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A + S +I+ EGYMDV++L +AG Q+ V+ LGT Sbjct: 241 LFDKGRNLYNHGPARAASGR----------GSTLIVAEGYMDVIALSEAGFQSAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QL LLW++S V+ DGD GLRAA + ID+ L L G + F ++ G+DPD Sbjct: 291 AVTDNQLHLLWRMSDEPVIALDGDTAGLRAAMRLIDMALPLLEAGKSLRFAIMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ +++P+V +LW+RETE R F++P+ +A L+ L+ I I+D + Sbjct: 351 DLIRAEGPEAVQAVLDQAIPMVQLLWRRETEGRVFDSPERKAALDKSLREKIKLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKY-------------------ITEHSGYGRYWKKNARHRDQKG 461 R +Y+ I++ QLF+ G Sbjct: 411 RLHYANDIKELRFQLFRGQRGGGGQGGTGYGQRYGGFKPGSRMQGGFRDGARMPWGAPPP 470 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P S + + +REA +L T I P ++ E L ++ + E L Sbjct: 471 PRSTTRASMVASSEEQDFARVREAVILATAITTPTVIPEFEINLERMQCQDMEHAHLRDL 530 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + +E L +EI L LL A ++ + Sbjct: 531 VLRYGIEAPERLRDEIAYALGPDALENLLS----LRHVAISPCVRKPGDLDMASLTLAEE 586 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 A + L+ + E E+ + + T L E + + E+++ Sbjct: 587 FAKLESIAGLNAELAEAEEDL---DGLADEALTWRL-RQAAEARNRAVRSENEDKATYDV 642 Query: 642 GKMSGRL 648 G+ RL Sbjct: 643 GENGARL 649 >gi|77463968|ref|YP_353472.1| DNA primase [Rhodobacter sphaeroides 2.4.1] gi|77388386|gb|ABA79571.1| DNA primase [Rhodobacter sphaeroides 2.4.1] Length = 643 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 201/646 (31%), Positives = 320/646 (49%), Gaps = 21/646 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N KGD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LA AG+ +P DP+ +K ++ L + Sbjct: 61 FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL R + E F +G+APD R +L + L KG + Sbjct: 121 MEEAVKFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDGRQALFQALTGKGIAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL ++ YDRFR R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKGRNLYNAGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ P V+ DGD G+RAA + +DL L L G + F +L G DPD Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G +A +++ + P+V +LW+RETE F++P+ RA L+ L+ + I D + Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479 R +Y + ++F + + + + R P S L + + Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +R +L T HP ++ E L + + + + L L + + + Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 G L++L S ++ R + LA + R ++ EE Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + +A + +G + + H + +++ + E +S Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626 >gi|75676625|ref|YP_319046.1| DNA primase [Nitrobacter winogradskyi Nb-255] gi|74421495|gb|ABA05694.1| DNA primase [Nitrobacter winogradskyi Nb-255] Length = 634 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 201/638 (31%), Positives = 324/638 (50%), Gaps = 34/638 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P FI ++ +P+S ++G+ V R ++ PF EKTPSF ND K Sbjct: 1 MRFPPSFIDEVKARLPVSEVVGRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS G+ F+ G SF E+V+RLAA+AG+PLP + E++E+ + L + Sbjct: 56 FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAAMAGLPLPRNSREDEQREQRRKSLFEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +F +L + + YL +R I +I F++GYA R++L+E+L KG Sbjct: 116 MELAAKYFEQNLASRVGAQARGYLSDRAIVPSSIVEFRIGYATADRFALKEYLGSKGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLLI GD+ YDRFR+R++ PI RG+++ FGGR L K KYLNSPET Sbjct: 176 ADMIEAGLLIAGDDIPVPYDRFRDRIMIPIHDQRGRLVGFGGRALRKDVQPKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG ++NF A ++ ++ VEGYMD +++ QAG++ VV+++GT Sbjct: 236 IFHKGSVVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LW+LSP V+CFD D G+ AAY++ID +L L G FV + +DPD Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGVAAAYRSIDRILPLLRVGKTFRFVFMDEQKDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G AF ++ SLPL D+LW+RET+ + TPD++A LE L + I+D + Sbjct: 346 DLIREKGVEAFRNVLSGSLPLWDVLWQRETDGQDVRTPDKQAALEQRLYALVRTIQDPAV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + R +L LF W+ N + + + ++ + + Sbjct: 406 NTAFFRTSRMQLANLF-------------WQVNRGPSRNQKEAGSKFVRNELRIRGEDQR 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S + LL L+ +P +L+++ + +++ + + S LF V + I +R Sbjct: 453 SGLQKVLLGMLVQYPELLEDKRDVVLRLQFPD-AFDQFLSHLFQLLVTEAKLSVSVIWER 511 Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + L + R L+ L + R L + +E Sbjct: 512 LDHEFYETLQTVHGDAGAGKPRGHRLFERFPVLKNDPPSDFVSGCLDHFIRILLWHQLEE 571 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +IE+ +G+ A L++++ E H + I ++ Sbjct: 572 DIERARLDA-GEGDETAVARLLNLVREGHAEQEAISAE 608 >gi|126733204|ref|ZP_01748951.1| DNA primase [Roseobacter sp. CCS2] gi|126716070|gb|EBA12934.1| DNA primase [Roseobacter sp. CCS2] Length = 661 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 202/600 (33%), Positives = 314/600 (52%), Gaps = 15/600 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + + ++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG Sbjct: 7 MSLPPGFLDELRNRLSLGQVVGRKVMWDTRKSNQGKGDLWAPCPFHQEKTASFHVDDRKG 66 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LAA AG+P+P DP+ ++K +T L+ + Sbjct: 67 FYYCFGCHAKGDAITFVRETENVDFMEAVKILAAEAGMPVPERDPQAQEKADARTVLVDV 126 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A + L+ YL+ RG+ + A +++G+AP + + E L KG + Sbjct: 127 MEQAVQYHRLQLQTGAAADARDYLERRGLSADAQARWEIGFAPPN-GGVLEQLSGKGIDQ 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + II+AGL + D Y+RFR+R++FPIR +RG+ I FGGR + KY NSPET Sbjct: 186 KLIIDAGLAAESDRGNGLYNRFRDRIMFPIRDARGRAIGFGGRAMDPNHPAKYYNSPETA 245 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++L+N A K +++ EGYMDV++L +AG V+ LGT Sbjct: 246 LFDKGRSLFNHGPAREAAGK----------GKPLVVAEGYMDVIALSEAGFTATVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W+ +P ++ DGD GLRAA + ID+ L L G + F L+ G DPD Sbjct: 296 AITEDQLRLMWRTAPEPIISLDGDKAGLRAAMRVIDIALPLLEAGQSLRFALMPEGLDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G A +KL+ +++P+V +LW+RETE +F++P+ +A LE L+ + I+D + Sbjct: 356 DLIKAQGAGAMQKLLDQAIPMVQLLWRRETEGGTFDSPERKAALEKALREKVELIRDPTI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM--QSSLVKGKLSK 478 R +Y QA++D LF N+R K + +SS + + Sbjct: 416 RSHYDQALKDMRWALFSNRKAASVRKAGGGTWNSRQDPWKREVSPVATSRSSALASGAAD 475 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LREA +L T I P + E L + + L + L L I Sbjct: 476 QDHLREAVILATFIAAPTVASEFETGLEQMECRDPIHHDLQACLLRHLGADD--LRAAIV 533 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + +L Q + A + + + + + + A + R + E++ Sbjct: 534 ADLGDTPLEKLFAQNHVAISPAIRRGGDVDIARLCLAEEFAKLTARRGQVREIEDAVEDL 593 >gi|315499352|ref|YP_004088156.1| DNA primase [Asticcacaulis excentricus CB 48] gi|315417364|gb|ADU14005.1| DNA primase [Asticcacaulis excentricus CB 48] Length = 632 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 209/645 (32%), Positives = 319/645 (49%), Gaps = 26/645 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+++L + S +IG+ V R ++ PF EKTPSF+ ND KG Sbjct: 1 MRFDDRFLEELKSRLRPSEVIGKAVKLRRNGR-----EWVGLSPFSKEKTPSFYVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++ FS GD +SFL SF+E+V+RLA+ AG+ LPV P+ + E+ + L Sbjct: 56 FFHDFSSGKHGDIISFLQETERLSFVEAVERLASEAGMALPVQTPQAAQAEQKRQSLNDW 115 Query: 121 IEVATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +E+A +F L K YL +RG+ + F LGYAP + +L++ L QKG Sbjct: 116 MELAARWFAARLHDNTPGAKAARDYLKKRGLSDQDVAHFGLGYAPKEQTALKDALVQKGA 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++E GLLI+ + A YDRFRNRL+FPI +R ++++FGGR L E KYLN PE Sbjct: 176 KVSELVECGLLIEIEGKA-PYDRFRNRLMFPIEDARSKIVSFGGRALDPDEKAKYLNGPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHKG LY AL L + +++VEGYMDVL+ +A + V+ L Sbjct: 235 TPLFHKGSLLYGLPKALKILG-------SSQTGPELVVVEGYMDVLACQRAQIA-AVAPL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q+ +LW+ P LCFDGD G+RAA +A+D L L PG L++ G+D Sbjct: 287 GTALTEEQIDILWRRHPEPTLCFDGDKAGMRAANRALDRALPKLKPGKSFKVCLITGGKD 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R G A + + E+ P V++L+KRE E +TP+ +A L L+ I+D+ Sbjct: 347 PDDVLREKGALALRESLSETQPFVEVLFKRERELEPLDTPERKAGLRKRLRALAAQIEDK 406 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEH-------SGYGRYWKKNARHRDQKGPSQRLMQSSL 471 L Y Q + R LFQ+ G GR+ ++A+ R + P+ + + Sbjct: 407 DLADSYRQDLMARYDALFQRQPQNLQPRFQSAQGRGRFAYRDAQGRLIEPPTIATPEGQM 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 LSK AAL L++HP + + + L + L L L S Sbjct: 467 AARALSKALDPMAAALAQGLLDHPDWMFDHMEALESYGLGDPALDALVRALVSLSFSTSP 526 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 +++ L +GFG LL ++ + + + + D + G+ +A + R L Sbjct: 527 LDSGAVNRHLQNQGFGALLSEIQKAALRSASPILAQDKTLADAQAGWIKAFNAFARLTAL 586 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R + +A+ +AE A + + + EA Sbjct: 587 DRALKAAR---DDASAEFDAEIFARTKQERDSLRKALKSGQIFEA 628 >gi|84515378|ref|ZP_01002740.1| DNA primase [Loktanella vestfoldensis SKA53] gi|84510661|gb|EAQ07116.1| DNA primase [Loktanella vestfoldensis SKA53] Length = 654 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 199/610 (32%), Positives = 312/610 (51%), Gaps = 18/610 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + + ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRLSLGQVVGRKVMWDARKSNPGKGDLWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F+E+V+ LA AG+P+P DP ++K ++ L+ + Sbjct: 61 YYYCFGCHAKGDAISFVRETENVDFMEAVKILAGEAGMPMPERDPAAQQKADLRGQLVEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + L+ A YL RG+ A + +G+AP HL +G Sbjct: 121 MEKVIKWHRLQLQTAAATEARDYLARRGLSPEAQARWDIGFAPAQ-GGALAHLSAQGVDA 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +I AG+ + D YDRFR R+IFPIR +RG+ I GGR + KY NSPET Sbjct: 180 KLVIAAGIAAESDRGGAPYDRFRGRIIFPIRDARGRAIGMGGRAMDPNAPAKYYNSPETP 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++L+N A K +I+ EGYMDV++L +AG V+ LGT Sbjct: 240 LFDKGRSLFNHGPAREAAGK----------GKPLIVAEGYMDVIALAEAGFTATVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRLLW+++P ++ DGD GLRAA + ID+ L L G + F L+ G DPD Sbjct: 290 AITEDQLRLLWRIAPEPIIALDGDTAGLRAAMRLIDIALPLLESGQSLRFALMPPGLDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G A +KL+ ++P+V +LW+RETE ++F++P+ +A L+ L++ I I D + Sbjct: 350 DVIKTQGAGAMQKLLDAAIPMVQLLWQRETEGKNFDSPERKAALDKALRDKIKLIADPSI 409 Query: 421 RYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y +AI++ LF G W +NA + ++S++ + Sbjct: 410 RSHYGEAIKEMRWALFSTRRPAAPRAQGGTWSRNADPWKRAISPVATARNSMLGAGAVSQ 469 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LREA +L T+I P++ E L I + + L + + ++ Sbjct: 470 EHLREAVILATMIVAPSVAVEFGDALERIDCRDPAHRDLQAAILRHLGN------ADLET 523 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L++L Q A + + R + A R +R+ E+ Sbjct: 524 IISADLGADALEKLLTQSHVAISPAVRRKGEAEVARLCLAEEFAKLTARRGHAREIEDAV 583 Query: 600 KQIAQVTAKG 609 + + + +G Sbjct: 584 EDLGGLADEG 593 >gi|332558840|ref|ZP_08413162.1| DNA primase [Rhodobacter sphaeroides WS8N] gi|332276552|gb|EGJ21867.1| DNA primase [Rhodobacter sphaeroides WS8N] Length = 643 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 201/646 (31%), Positives = 321/646 (49%), Gaps = 21/646 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N KGD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LA AG+ +P DP+ +K ++ L + Sbjct: 61 FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL R + E F +G+APD+R +L + L KG + Sbjct: 121 MEEAVRFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDARQALFQALTGKGIAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL ++ YDRFR R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKGRNLYNVGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ P V+ DGD G+RAA + +DL L L G + F +L G DPD Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G +A +++ + P+V +LW+RETE F++P+ RA L+ L+ + I D + Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479 R +Y + ++F + + + + R P S L + + Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +R +L T HP ++ E L + + + + L L + + + Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 G L++L S ++ R + LA + R ++ EE Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + +A + +G + + H + +++ + E +S Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626 >gi|149914288|ref|ZP_01902819.1| DNA primase [Roseobacter sp. AzwK-3b] gi|149811807|gb|EDM71640.1| DNA primase [Roseobacter sp. AzwK-3b] Length = 634 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 209/609 (34%), Positives = 310/609 (50%), Gaps = 18/609 (2%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G+ V WD RK+N KGD WA CPFH EKT SFH +D KGFYYCF CH KGD + F+ Sbjct: 3 GRKVMWDMRKSNQAKGDMWAPCPFHQEKTASFHVDDRKGFYYCFGCHAKGDAIGFVKDTE 62 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141 F+E+V+ LAA AG+P+P DP+ ++K + L ++E+A FF LK Sbjct: 63 NVDFMEAVRILAAEAGMPMPERDPQAQQKADRRQQLAEVMEMAVQFFRLQLKMGAGAAAR 122 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS-ATSYD 200 YL RG+ E F++G+AP S +L +HL KG +E I++ GL YD Sbjct: 123 DYLAGRGLAEAGQERFEIGFAPASWQALLDHLTSKGVEQELILDCGLCRRSTKPGGRPYD 182 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 FRNR++FPIR RG+ IAFGGR + + KYLNS +T LF K + LY+ A K Sbjct: 183 AFRNRIMFPIRDPRGRCIAFGGRAMDPADDAKYLNSQDTELFDKSRVLYHHGQAREAAGK 242 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 +I+ EGYMDV++L AG V+ LGTA+TE+ L+LLW+++ ++ Sbjct: 243 ----------GKPLIVAEGYMDVIALAMAGFDASVAPLGTAVTEHHLQLLWRIADEPIIA 292 Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 DGD GLRAAY+ ID+ L L G + F L+ G DPD +R G A ++++ +LP Sbjct: 293 LDGDGAGLRAAYRTIDVALPLLESGKSLRFALMPEGMDPDDLLRAKGPVAVQEILDRALP 352 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 +V +LW+RETE R F++P+ RA L+ L+ I I+D +R +Y +AI++ LF Sbjct: 353 MVQLLWQRETEARIFDSPERRASLDKALREKIMLIRDPSIRSHYGEAIKELRWALFSPRR 412 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 E G + + + R + Q S LV LREA +L T+I P + + Sbjct: 413 QEGGGARQGFGRGGRWQPPASARQTTRASLLVAAGEGAHQRLREALILATVICTPQVFDD 472 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 +L + + E ++L + + E + RL G+ L++L A Sbjct: 473 VEGQLEGMTCSDPEHERLRGLILRHAGQAG----EALRARLETEAGGDALEKLLSLPHVA 528 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + + R + L+ + R L+ + E + +A + T L Sbjct: 529 LAPAVRRPGDPDIARMTIAEELSKLEAERGLNAEVREAAEDLA---GVADEAVTWRLGQA 585 Query: 621 LHEVHIQIH 629 E + Sbjct: 586 AEERQRALR 594 >gi|15613938|ref|NP_242241.1| DNA primase [Bacillus halodurans C-125] gi|18203179|sp|Q9KD44|PRIM_BACHD RecName: Full=DNA primase gi|10173991|dbj|BAB05094.1| DNA primase [Bacillus halodurans C-125] Length = 599 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 37/630 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ + I ++IG+YV ++ N Y CPFH E TPSF + K Sbjct: 4 RIPQETIEEIRRSVDILDVIGEYVQLKKQGRN-----YIGLCPFHGENTPSFSVSPDKQL 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G+ +FL + G +F+E+V+ LA A V LP K+ + + LI + Sbjct: 59 YHCFGCGAGGNAFTFLEQIEGFTFVEAVETLAKRANVVLPERVSPSVKQNRDEELLISIQ 118 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FFHH L K YL+ RG IE F++G+AP +L L ++ Sbjct: 119 EFAAKFFHHVLMLTEEGKAGRTYLERRGFTKEQIEHFQIGFAPPHWDALTNVLAKRDVDL 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +K E+GLL++ ++ YDRFRNR+IFPIR+ +G+++AFGGRTL + KYLNSPE+ Sbjct: 179 KKAGESGLLVERESDGKRYDRFRNRVIFPIRNGKGKIVAFGGRTL-GDDKPKYLNSPESP 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KGK LY F+ A ++K + +L EGY+DV++ +AGV N V++LGT Sbjct: 238 IFQKGKLLYGFYQARPAIRK----------ENEAVLFEGYVDVIAAWKAGVTNGVATLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LTE Q R++ + + +++C DGD G A +++ DL G V ++ G DPD Sbjct: 288 SLTEEQARMIRRNAETVIICNDGDAAGAEATFRSADL---LQQEGCHVKVAMIPDGLDPD 344 Query: 361 SFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 +I+ YG F+K +I ESL L+ K R+ ER + I + Sbjct: 345 DYIQKYGAERFKKDVIGESLTLMKFKMKYFRMGRNLQNEGERILYIEEIIKEIAKLSKAV 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y + + + E R K+ + K + R + + +L Sbjct: 405 ERDHYLRQLAEEFSLSLDALKQEQYRIYREMKRQNQVSQGKTNTVRQKKHDFEQKRLLPA 464 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E LL ++ + ++ + + L R++ + Q + + LF+ + E P Q Sbjct: 465 YQNAERILLAHMMRNVSVAETVQERLGG-RFNVDHYQAIVAHLFAYYAEGFEPDPCTFIQ 523 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 RL ++ + +L + E N ++ Y + + +Y ++ L + + ++ Sbjct: 524 RLEDQELIRVATELA-------MLEINEEINDQELND-YIEKIEMYPKWLELQQIESALK 575 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 K+ + A L + Q+ Sbjct: 576 KE-------TDPVLYATRKQELINMKKQLK 598 >gi|167648219|ref|YP_001685882.1| DNA primase [Caulobacter sp. K31] gi|167350649|gb|ABZ73384.1| DNA primase [Caulobacter sp. K31] Length = 641 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 185/648 (28%), Positives = 305/648 (47%), Gaps = 28/648 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L + S++IG+ V R+ +Y PF EK+PSF ND KG Sbjct: 1 MRFDDHFLDELKQRLRPSDVIGKSVKLRRQGR-----EYAGLSPFTKEKSPSFFVNDDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD +S+L +F E+V+RLAA AG+ LP D + +++K + L Sbjct: 56 FYHCFSSGKHGDIISYLQETERLTFTEAVERLAAEAGMALPEPDARAAQEDKKRATLTDW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L+ + YL R + F++G++P+ R +L+++L KG Sbjct: 116 METAAAWFESELRRPVGQAARDYLARRALPEDQWSRFRIGFSPNGRTALKDYLIAKGAKP 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++I+AGLLI ++ YDRFR+R+IFPI +RG+V++FGGR + KYLN PET Sbjct: 176 AELIDAGLLIAPEDGGQPYDRFRDRIIFPITDTRGRVVSFGGRAMDPAARAKYLNGPETT 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + A L + + +++VEGYMDV++ +AG+ V+ +GT Sbjct: 236 LFHKGRLLYGLYEARKLLH--AAQAAAPTEQTPLLVVEGYMDVVACQRAGLP-AVAPMGT 292 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE Q+ +LW+L P L FDGD G RAA +AID L L PG F +++ G+DPD Sbjct: 293 AMTEEQMEVLWRLHPEPTLSFDGDKAGQRAASRAIDRALPLLKPGRSFKFSIVTGGKDPD 352 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + ++ P V+ L+ RE + +TP+ +A + L+ I D+ L Sbjct: 353 DVLREQGAAALRSQLTQTTPFVEALFNRERDLEPLDTPERKAGFKQRLRAAAGTIADKDL 412 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + +L LF K G W + + + Sbjct: 413 AAAYRDDLYAKLDALFPKPAFGGGGTHGSWGGGESRPWTPRAQWKGGRDRGPPDPGIRGV 472 Query: 481 SLRE---------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E AA+ + + HPA + + + I + + L L + LF ++ Sbjct: 473 ARAEIVGRLNPFHAAVAVAALRHPAWARPYDEAIERIGFGDPRLAPLAAELFEALSDEIS 532 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 L +G G L + +R + + R + Sbjct: 533 DDVP-FRDILTRKGLGPQLAEAERVASAISAPFLDVKMDAHRARALWAACYEALV----- 586 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + E+ + + + TA +S + ++ +I +E Q + +E Sbjct: 587 --EIGDAERALQSLRGE---AVTAGTLSAVRDLRTRIGVLERQISGLE 629 >gi|84687693|ref|ZP_01015566.1| DNA primase [Maritimibacter alkaliphilus HTCC2654] gi|84664276|gb|EAQ10767.1| DNA primase [Rhodobacterales bacterium HTCC2654] Length = 652 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 209/622 (33%), Positives = 317/622 (50%), Gaps = 18/622 (2%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +L ++ ++G+ V WD+RK+N KGD WA CPFH EKT SFH +D KGFYYCF CH Sbjct: 2 DELRTRTSLAQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKTASFHVDDRKGFYYCFGCH 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 KGD LSF+ F+E+V+ LA AG+ +P DPK ++K +T L ++E A FF Sbjct: 62 AKGDALSFVKETENVGFMEAVEILAREAGMQMPERDPKAQEKADRRTQLAEVMEQAVQFF 121 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 LK YLD RG+ A + + +G+APD L +HLR KG +++ I+ AGL Sbjct: 122 RLQLKTNSGVGAREYLDRRGLKEAAQDRWDIGFAPDGWQGLWDHLRGKGVADDLILGAGL 181 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET LF KG++L Sbjct: 182 AKASSKGKQPYDTFRNRIMFPIRDARGRCIAFGGRAMDPNDNAKYLNSPETELFDKGRSL 241 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 YN A K + +++ EGYMDV++L +AG V+ LGTA+TE QLR Sbjct: 242 YNHGPAREAAGK----------GTPLVVAEGYMDVIALSEAGFGATVAPLGTAITEDQLR 291 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 LLW+++P ++ DGD GLRAA + ID L L G + F ++ G DPD I+ G Sbjct: 292 LLWRIAPEPIIALDGDTAGLRAAMRVIDTALPMLEAGQSLRFAIMPEGLDPDDLIKAQGA 351 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 A +K++ + P+V +LW+RETE + F++P+ RA L+ L+ I I+DQ +R +Y + I Sbjct: 352 GAMQKVLDGARPMVSLLWQRETEGKVFDSPERRAALDRDLRQAIAKIQDQSIRQHYGEEI 411 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----SQRLMQSSLVKGKLSKKPSLRE 484 + +LF G + R K S L + LRE Sbjct: 412 KRLRYELFNPRRDSAPRQGGWQGGGGRRGPWKPAGPAFQPATKGSLLAAASGQVEEVLRE 471 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A +L TL+ HP +++ + +E + + S E E++ ++ Sbjct: 472 AVILATLVTHPHLIESFESAFERVEMATDEHAAMQRAILSFDGEA----TEDLCAKIDAE 527 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L++L + + + LA R + ++ +I Sbjct: 528 VGTRALEKLFALNHVQIAPPIRRKDDPELAALCLAEELAKLDAARGARHELDDAVAEIGA 587 Query: 605 VTAKGEAEKTAILISILHEVHI 626 ++ +G + + + +L E Sbjct: 588 LSDEGLTFRLSEAVRLLDEARR 609 >gi|85715951|ref|ZP_01046928.1| DNA primase [Nitrobacter sp. Nb-311A] gi|85697149|gb|EAQ35030.1| DNA primase [Nitrobacter sp. Nb-311A] Length = 634 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 199/638 (31%), Positives = 322/638 (50%), Gaps = 34/638 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P FI ++ +P+S ++G+ V R ++ PF EKTPSF ND K Sbjct: 1 MRFPPSFIDEVKARLPVSEVVGRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS G+ F+ G SF E+V+RLA +AG+PLP + E++E+ Q L + Sbjct: 56 FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAVMAGLPLPRSSREDEQREQRQKSLFEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF +L + + YL +R I ++ F++GYA R++L+E+L KG Sbjct: 116 MELAAKFFEQNLASRVGAQARGYLSDRAIAPSSVIEFRIGYATPDRFALKEYLGSKGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IEAGLLI GD+ YDRFR+R++ PI RG+V+ FGGR L K KYLNSPET Sbjct: 176 EDMIEAGLLIAGDDIPVPYDRFRDRIMIPIHDQRGRVVGFGGRALRKDAQPKYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG ++NF A ++ ++ VEGYMD +++ QAG++ VV+++GT Sbjct: 236 IFHKGSVVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LW+LSP V+CFD D G+ AAY+++D +L L G FV + +DPD Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGVAAAYRSVDRILPLLRVGKTFRFVFMDEQKDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G AF ++ SLPL D+LW+RET+ R TPD++A LE L + I+D + Sbjct: 346 DLIREKGVEAFRGVLSGSLPLWDVLWQRETDGRDIRTPDKQAALEQKLYTLVRTIQDPAV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + R +L LF W+ N + + + ++ + + Sbjct: 406 NTAFFRTSRMQLANLF-------------WQVNRGPSRKNREAGSKFVRNELRIRGEDQR 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S + +L L+ +P +L+++ + + + E + LF V +I + Sbjct: 453 SGLQKVILGMLVEYPNLLEDKQDSVERLHFP-EEFNGFLTSLFRLLVTDAKLSVADIWTK 511 Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + L + D + R L+ + L + R ++ Sbjct: 512 LKPEFYDTLQTVHGEAGDGKQRGHRLFERFPILSRDPPSDFVSGCLDHFIRILHWHELED 571 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +I++ +G+ A L++++ E H + I ++ Sbjct: 572 DIQRARLDA-GEGDESAVARLLNLVREGHAEQEGISAE 608 >gi|254454455|ref|ZP_05067892.1| DNA primase [Octadecabacter antarcticus 238] gi|198268861|gb|EDY93131.1| DNA primase [Octadecabacter antarcticus 238] Length = 644 Score = 406 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 208/610 (34%), Positives = 324/610 (53%), Gaps = 15/610 (2%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + I ++G+ V WD+RK+N KGD WA CPFH EK+ SFH +D KG+YYCF CH KG Sbjct: 2 RTRLSIGQVVGRKVMWDQRKSNQGKGDLWAPCPFHQEKSASFHVDDRKGYYYCFGCHAKG 61 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D +SF+ SF+E+V+ LA AG+P+P DP+ + K +T L ++E A F+ Sbjct: 62 DAISFVRETENVSFMEAVEILAVEAGMPVPKRDPQAQAKSDRRTLLAEVMEQAVQFYRLQ 121 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 LK YL RG+ A+E +++G AP +L +HL KG +E+ I+ AGL Sbjct: 122 LKAGAGAEARDYLAGRGLSEAALERWEIGLAPQGWQNLWDHLSGKGVAEDLILGAGLGKP 181 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 + YD FR+R++FPIR +RG+ IAFGGR + ++ KYLNSPET LF KG++LYNF Sbjct: 182 SNQGKKPYDTFRHRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSLYNF 241 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311 A K +++ EGYMDV++L +AG V+ LGTA+TE QL+++W Sbjct: 242 APAREAAGK----------GQPLLVAEGYMDVIALVEAGFGAAVAPLGTAVTETQLQMMW 291 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 +++P V+ DGD G RAA + IDL L L G V F ++ G+DPD ++ G A Sbjct: 292 RIAPEPVITLDGDVAGQRAAMRVIDLALPLLEAGQSVRFAMMPDGQDPDDLLKSAGAGAM 351 Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + + +LP+V +LW+RE E ++F++P+ +A L+ L+ I IKD +R +Y QAI+D Sbjct: 352 RERVEGALPMVQLLWQREVEGKNFDSPERKAALDKSLREKIMLIKDPSIRSHYGQAIKDM 411 Query: 432 LQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +LF +G G ++ + K P+Q ++SL+ G S + LREA +L Sbjct: 412 RWELFGNNRKAFNGGGTGQQRGKWLPKGAKLPAQMSTKASLLGGGPSSEDHLREAVILAV 471 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCERGFGEL 549 LI +P IL + + L + ++ L L + + E I + + +L Sbjct: 472 LIRNPLILNDFHGALERMICSGPDIAMLRDALL---MVEPQVDLEAILASEIGDAPLVKL 528 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 Q + A E + + + + A + +E+ +A Sbjct: 529 FAQAHVTITPAVRRPDNGELARMCLAEEIAKLTARRGHAHEVQDAIDEMNSDVADERLTT 588 Query: 610 EAEKTAILIS 619 ++ ++ Sbjct: 589 RLAQSIAAMN 598 >gi|163747452|ref|ZP_02154804.1| DNA primase [Oceanibulbus indolifex HEL-45] gi|161379305|gb|EDQ03722.1| DNA primase [Oceanibulbus indolifex HEL-45] Length = 659 Score = 405 bits (1041), Expect = e-110, Method: Composition-based stats. Identities = 206/612 (33%), Positives = 309/612 (50%), Gaps = 25/612 (4%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 ++L +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KGFYYCF CH Sbjct: 2 EELRDRASLSQVVGRKVIWDNRKSNQGKGDMWAPCPFHQEKSASFHVDDRKGFYYCFGCH 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 KGD +SF+ SF+E+V+ +A G+P+P DP+ + K +T L ++E A +F Sbjct: 62 AKGDAISFVRETENVSFMEAVEIIAREVGMPVPKQDPRAQAKSDRRTQLAEVMEQAVQWF 121 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L+ YL +RG+ A +++G+APD+ L + L+ KG ++ I AGL Sbjct: 122 RLQLRTGAAGPARDYLAKRGLSEKAQAHWEIGFAPDNWQGLWDALKAKGVEDDLIFGAGL 181 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 YD FR R++FPIR +RG+ IAFGGR + + KYLNSPET LF KG++L Sbjct: 182 AKPSTKGGRPYDTFRGRIMFPIRDARGRAIAFGGRAMDPNDKAKYLNSPETELFDKGRSL 241 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 YN A + +I+ EGYMDV++L AG + V+ LGTA+TE QL+ Sbjct: 242 YNVKDARAAAGR----------GQPLIVAEGYMDVIALHGAGFEGAVAPLGTAITENQLQ 291 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +LW+++P ++ DGD G RAA + IDL L L G + F ++ G+DPD +R G Sbjct: 292 MLWRIAPEPIITLDGDAAGQRAALRLIDLALPLLEAGQSLRFAVMPEGQDPDDLLRAQGA 351 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 A +KL+ +LP+V +LW+RETE + F++P+ +A L+ L+ I I+D +R +Y Q I Sbjct: 352 GALQKLLDSALPMVKLLWQRETEGKVFDSPERKAALDKSLREKIKLIRDPSIRSHYGQEI 411 Query: 429 RDRLQQLFQKYITEH----------SGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLS 477 +D LF+ K P S+LV Sbjct: 412 KDLRWDLFRPQKPRADFRPVGGRGPGKGVGKGGKGGNWGAPLAPLASTKASALVAMSDDQ 471 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 LREA +L+ L P +++ L + + + +L L + L EEI Sbjct: 472 VGLHLREAVILVALAGCPQLIETFETGLEGMACTDPDHARLRDLLLRFGHASEEVLREEI 531 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L E L+ + Q A N+ R + LA R L+ + E Sbjct: 532 SYSLGW----ETLENIKAQRHVAITPCIRKPGNVEMTRMTVAEELAKLDAARGLNEEIAE 587 Query: 598 IEKQIAQVTAKG 609 + ++ +G Sbjct: 588 AVEDLSGPADEG 599 >gi|297559738|ref|YP_003678712.1| DNA primase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844186|gb|ADH66206.1| DNA primase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 623 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 153/645 (23%), Positives = 275/645 (42%), Gaps = 39/645 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + PI+++IG+Y+ NA G CPFHDEK+PSF+ SK Sbjct: 4 RIRDEDIALVRERAPIADVIGEYLQL----RNAGGGSLKGLCPFHDEKSPSFNVTPSKNL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 +YCF C GD +SFL + SF E+V+ LA AG+ L + + L+ Sbjct: 60 WYCFGCGEGGDTISFLQRIDSLSFTEAVETLARQAGITLRYEEGGRSAARHDTGKRQRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ L + +LDERG + E F LGYAP +L HLR+KGF Sbjct: 120 DAHRAAAEFYAEQLLSPGAVTARRFLDERGFNRAHAEHFGLGYAPAGWENLTAHLRRKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 ++ +++E GL +YDRFRNRL++PIR G+V+ FG R L + KYLNSP Sbjct: 180 TDAELVEGGLASQ--GRRGAYDRFRNRLLWPIREVTGEVVGFGARKLDPEEDGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +FHKG+ LY A + + ++VEGY DV++ AG V++ Sbjct: 238 ESPVFHKGRLLYGLDLAKRNIAR----------EGKAVIVEGYTDVMACHLAGEDTAVAT 287 Query: 298 LGTALTEYQLRLLWKL-------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GT+ E +++L ++ S R+V FDGD G +AA +A + Sbjct: 288 CGTSFGEDHVKILRRMLLGRTGQSGRVVFTFDGDKAGQKAAVRAFAEEHGFA---SETFV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP +G A L+ ++ PL + + + E+ +TP+ R Sbjct: 345 AVQPDGLDPCDLRLQHGPQAVVDLVKDAAPLYEFMIRNVMESYDLSTPEGRMAALDAAAP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D+ +R Y + + + L + ++ + + P++ + Sbjct: 405 VVASIRDEGVRRDYGRNLDRWIGILDEAFVLRRVNQHMRGARGRGPGPRTAPARPVPTPD 464 Query: 471 LVKG--KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + L RE L + P++ + + + + + + + + Sbjct: 465 AQEAPYNLGDPSVQRERQALKIALQFPSLAV-GFDAFTEEDFTVPQHRAVLGLITAAGGV 523 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 P L E + + ++ L ++ + Y + + + Sbjct: 524 AAAHDPAAWVNGLREAAPNDTQRDFLTRLVVEQLEFY------GELDEHYARQILGTVKT 577 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++R++ + +++++ + E+ L++ L + Q ++ Sbjct: 578 HSINRRESNLRSELSRLEGTPQVEEQQRLLTELMALQQQKRALQE 622 >gi|126727889|ref|ZP_01743717.1| DNA primase [Rhodobacterales bacterium HTCC2150] gi|126702830|gb|EBA01935.1| DNA primase [Rhodobacterales bacterium HTCC2150] Length = 647 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 202/611 (33%), Positives = 312/611 (51%), Gaps = 17/611 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L ++ ++G+ V WD+RK+N KGD W+ CPFH+EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRTSLTQVVGRKVTWDQRKSNQAKGDMWSPCPFHEEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ SF+E+V+ LA G+P+P DP+ +KK L + Sbjct: 61 FYYCFGCHAKGDALGFIRETENVSFMEAVEILARENGMPMPARDPQAQKKADRNAQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A F+ L+ YL RG+D A F +G+AP+ R L HL K + Sbjct: 121 MEMAVQFYRLQLQTGAAGNARDYLLRRGLDEAAQARFDIGFAPEQRQILFSHLTGKNVAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + IIEAGL D+ YDRFR R++FPIR +RG+ I GGR + + KYLNSPET Sbjct: 181 DLIIEAGLAAKPDDGGAPYDRFRGRILFPIRDARGRAIGLGGRAMDQNARAKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K + +I+ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRSLYNHGPAREAAGK----------GAPLIVAEGYMDVIALVEAGFGAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL L+W++SP ++ DGD G+RAA + ID+ + G + F ++ G+DPD Sbjct: 291 AVTENQLALMWRISPEPIIALDGDKAGIRAAMRLIDIAFPLIEAGKSLRFCIMPEGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G A + L+ ++ P+V++LW+RET+ ++F++P+ RA L+ L++ + IKD + Sbjct: 351 DVIKAQGAGAMQALLDQAEPMVNLLWRRETDGKNFDSPERRAALDKSLRDALMLIKDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR--YWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +Y +A+++ +LF + K ++ P S L Sbjct: 411 QRHYGEAVKNLRWELFDPRQGKTPQKREWTPGGKGKWNKAPTKPLASTKTSLLASAGAGV 470 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LREA +L LI HP+I+ E ++ + E + L + EI Sbjct: 471 EDQLREAVILAALICHPSIIPEFEADMDTLHMS-PEHAGIRDALLRLPTDTDTESAREII 529 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L +L N + + LA R + E Sbjct: 530 A----QEHRSALDKLFALNHVQIAPPVRNTENHSQAAKCVAEELAKLTSIRGAELEISEA 585 Query: 599 EKQIAQVTAKG 609 + + + +G Sbjct: 586 AEDLQGIADEG 596 >gi|221639824|ref|YP_002526086.1| DNA primase [Rhodobacter sphaeroides KD131] gi|221160605|gb|ACM01585.1| DNA primase [Rhodobacter sphaeroides KD131] Length = 643 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 199/646 (30%), Positives = 318/646 (49%), Gaps = 21/646 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N KGD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LA AG+ +P DP+ +K ++ L + Sbjct: 61 FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAMPARDPRAAEKADRRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL R + E F +G+AP+ R +L + L KG + Sbjct: 121 MEEAVKFYRLQLRTGAAAAARDYLARRRLSPEGQERFGIGFAPEGRQALFQALTGKGIAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL + YDRFR R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPEEGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKGRNLYNVGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ V+ DGD G+RAA + +DL L L G + F +L G DPD Sbjct: 291 AITEDQLRLMWRIHSEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G +A +++ + P+V +LW+RETE F++P+ RA L+ L+ + I D + Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479 R +Y + ++F + + + + R P S L + + Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +R +L T HP ++ E L + + + + L L + + + Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDHRALHRVLLAAAG----MAEADTAR 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 G L++L S ++ R + LA + R ++ EE Sbjct: 523 GAIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + +A + +G + + H + +++ + E +S Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626 >gi|254420395|ref|ZP_05034119.1| DNA primase catalytic core, N-terminal domain family [Brevundimonas sp. BAL3] gi|196186572|gb|EDX81548.1| DNA primase catalytic core, N-terminal domain family [Brevundimonas sp. BAL3] Length = 624 Score = 405 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 201/638 (31%), Positives = 319/638 (50%), Gaps = 25/638 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + FI +L + S++IG+ V R+ +Y PF EK+PSF ND KGF Sbjct: 6 RFDERFIDELKARLRPSDVIGRTVKLKRQGR-----EYVGLSPFSKEKSPSFFVNDDKGF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++ FS GD +SFL SF+E+VQRLA AG+ LP DPK ++E+ + L + Sbjct: 61 FHDFSSGKHGDIISFLQETERLSFVEAVQRLAGEAGMQLPAEDPKEAEREQKRQGLSDWM 120 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++A +F +L+ K YL++RG+ E F LGYAP+ R L++ L Q+G Sbjct: 121 DLAQKWFAANLRRTPGKAAREYLEKRGLPEDQWERFGLGYAPNDREGLKQALVQRGARPA 180 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++EAGLLI ++ YDRFR+RL+FPI +RG++++FGGR ++ + KYLN PE+ L Sbjct: 181 ELVEAGLLISPESGGQPYDRFRDRLMFPILDARGRIVSFGGRAMNPDDRAKYLNGPESPL 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG LY A L R D II+VEGYMDV++ +AG+ V+ +GTA Sbjct: 241 FHKGATLYGLPEARRILGAESRNDQA------IIVVEGYMDVIACQRAGLP-AVAPMGTA 293 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE Q+ LW++S VLCFDGD GLRAAY+AI+ L L G F LLS G+DPD Sbjct: 294 LTEEQMERLWRVSHEPVLCFDGDAAGLRAAYRAIERSLPLLKAGRSFRFSLLSGGQDPDD 353 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G A + + ++ ++L++RE + +TP+ +A + L+ + I+D+ L Sbjct: 354 ILRDKGAPALRQALADTHGFAEVLFRREQDVEPLDTPERKAGFKARLRTAASAIQDKDLA 413 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + DR LF + + + ++ + L + S Sbjct: 414 EQYRRDLFDRFDALFPRAPQRAPW---TPGQGRGRFGPPPKLGQTVEGAQAMQSLFRAVS 470 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 AAL I+ L + +E++ + + L+ L L + + + RL Sbjct: 471 PVAAALAYAAIDDIERLDDHLEEVSVQGFGDAALEGLAQELVRLRLSGQPSDAAVVRHRL 530 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + GF LLK++++ +G +++ + + R + + L LSR E ++ Sbjct: 531 RDSGFEPLLKEIEKAASKSGASFLSSDLTVAESRAHWLKVFGLMTHLAALSRAIETAKQD 590 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q T I L + + I A + Sbjct: 591 MGQGTG----------IDALVRLKAERDAITRSFAAPD 618 >gi|307295454|ref|ZP_07575290.1| DNA primase [Sphingobium chlorophenolicum L-1] gi|306878493|gb|EFN09713.1| DNA primase [Sphingobium chlorophenolicum L-1] Length = 623 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 202/642 (31%), Positives = 302/642 (47%), Gaps = 23/642 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ F+ +L +S LIG+ V + +Y ACCPFH+EKTPSF ND KG Sbjct: 1 MSLSPAFLDELRARTSLSTLIGRTVKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G F+E+V+ LA AG+ +P DP+ K+ + L + Sbjct: 56 FYHCFGCGAHGDAIRWMTDHRGLPFMEAVKELAQAAGMEVPAPDPRAAKRAEQAKGLHDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A FF L Y+ RGI + F G++PD R L+ L+ G Sbjct: 116 MAAAQAFFEEQLGGIEGAEARAYVQRRGISAATARSFGFGFSPDGRGRLKAALKDFGEP- 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLLID D SYDRFR RL+ PIR RG+VIAFGGR L GE KYLNSP+T Sbjct: 175 -LLIEAGLLIDPDGERDSYDRFRGRLMLPIRDIRGRVIAFGGRILGAGEP-KYLNSPDTP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LYN A +++ R II+VEGYMDV++L QAG + LGT Sbjct: 233 LFDKGRTLYNIDRASPASRQAGR----------IIVVEGYMDVIALAQAGFGEAAAPLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE+Q+ LWK++ +LCFDGD G +AA +A L L PG + F L G+DPD Sbjct: 283 ALTEHQIERLWKMADVPILCFDGDSAGQKAAMRAATRALPLLKPGMSLAFATLPGGQDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A E ++ + PLV+ LWK E +TP++RA L+ L + I + Sbjct: 343 DLIRAQGPQAMESVLAAAEPLVERLWKFEQAAAPLDTPEQRAALKQRLSAITDAIGHPDV 402 Query: 421 RYYYSQAIRDRLQQLFQK----YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R +Y A R+R LF G + P S Sbjct: 403 RAHYVHAFRERYDALFFARQAFQPRHRRGGSARSGWQRDRKGNWKPPLPPAGSEARAIGA 462 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 S A+L +L+ HP + + L+ +R + L +L + + ++ Sbjct: 463 SGMEQRLLKAILASLLRHPEQIALHRETLSGLRIADGALAELMKAMIAASFGKETVETGG 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + + K + R ++A+ V++ +A+ + + L Sbjct: 523 LLTILGQGEVYNMAKGMLR-ADTFTFTPHRSKADSDRVQRDLDEAIRVMAQGPELEAALA 581 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 E ++ + + + + + ++ ++ E I Sbjct: 582 EATRRARDDLNEDSFAEQQRVRELKLDHDRRLAELAQSEDSI 623 >gi|148553356|ref|YP_001260938.1| DNA primase [Sphingomonas wittichii RW1] gi|148498546|gb|ABQ66800.1| DNA primase [Sphingomonas wittichii RW1] Length = 623 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 195/646 (30%), Positives = 313/646 (48%), Gaps = 26/646 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ F+ +L + +S LIG+ V + ++ ACCPFH+EK+PSF+ ND KG Sbjct: 1 MSLSPQFLDELRARVTLSTLIGRSVKLVKAGR-----EFKACCPFHNEKSPSFYVNDDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + FL+ G +FI++V+ LA AG+ +P DP+ ++ ++Q L + Sbjct: 56 FYHCFGCGAHGDAIRFLTEAKGLTFIDAVKELAQGAGMEVPAPDPRAAQRNEMQAGLHDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F L YL RGID ++ F +G+APDSR LR L+ G ++ Sbjct: 116 MAAAASWFQEQLGGIAGAEARAYLQRRGIDERLVKKFGIGFAPDSRGKLRTALKSFGDAK 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +L++ YDRFR R++ PI+ RG+VIAFGGR L KGE KYLNSP+T Sbjct: 176 LIETGLLILVE---DKEPYDRFRGRVMIPIQDQRGRVIAFGGRILDKGEP-KYLNSPDTP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ L+N A +K+ R +I VEGYMDV++L +AG+ V++ GT Sbjct: 232 LFDKGRTLFNIERASAASRKANR----------VIAVEGYMDVIALAKAGIDEAVAANGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL +W+++ +LCFDGD G +AA +A L + PG + F LL G+DPD Sbjct: 282 ALTEAQLERMWRMTEIPLLCFDGDKAGQKAAVRAAQRALPMIAPGRTLRFALLPGGQDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G A E+++ E++ L ++LW+ E E + +TP+ RA L L + I+D+ + Sbjct: 342 DLVKSGGVRAVEQVLDEAISLDELLWRAEYEAQPLSTPEARAGLRKRLGDLAGSIQDRDV 401 Query: 421 RYYYSQAIRDRLQQLF---QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y R R +LF Q+ E + ++ R P + S Sbjct: 402 RELYQAEFRRRFDELFGSAQRRPFERNFQPFQPRQQRRPGQPWKPEPLPPSRAAHAVNKS 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + A++ L+ PA+ + + ++ + L +L + F E + Sbjct: 462 GVNPMVTRAVMAGLLRFPALFSSHMEAIGQLQLGDERLDRLRAEAFEAGFSGGPLEKEGL 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L E G G ++++L + A+ + A+ LL E Sbjct: 522 ETILAEAGLGAVVEEL-KATNALAFSFLRGNADPDRAMRDLSAAIEAMAARPLLDAALRE 580 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 +++ E+ L++ + + E +G G Sbjct: 581 ATERLGMAADDAGLEEQRRLLAAREAADRALTDLALGE---DGGGA 623 >gi|146276890|ref|YP_001167049.1| DNA primase [Rhodobacter sphaeroides ATCC 17025] gi|145555131|gb|ABP69744.1| DNA primase [Rhodobacter sphaeroides ATCC 17025] Length = 654 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 199/601 (33%), Positives = 304/601 (50%), Gaps = 18/601 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N +GD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGRGDFWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD + F+ F+E+V+ LA AG+ +P DP+ +K ++ L Sbjct: 61 FYYCFGCHAKGDAIGFVKETENVGFMEAVEILAREAGMTMPARDPRAAEKADRRSQLAEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL R + + E F +G+APD R +L + L KG + Sbjct: 121 MEEAVKFYRLQLRTGAASAARDYLVRRRLSNEGQERFGIGFAPDGRQALFQALTGKGIAA 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL ++ YDRFRNR+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRNRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +++ EGYMDV++L +AG V+ LGT Sbjct: 241 LFDKGRNLYNIGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFGATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ V+ DGD GLRAA + +DL L L G + F +L G DPD Sbjct: 291 AVTEDQLRLMWRIHSEPVIALDGDAAGLRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A ++I + P+V +LW+RETE + F++P+ RA L+ L+ + I D + Sbjct: 351 DLIRSEGAAAMARVIEGAQPMVSLLWRRETEGQIFDSPERRAALDKRLRAAVQRIADPTI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--KGKLSK 478 R +Y + LF R + + R G + ++SL+ + Sbjct: 411 RRHYGDELNRLRMDLFGSATPR-----RAFHRGGRREAGAGMQVSVARNSLLARAASEAA 465 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEI 537 + L+EA LL L+ HP ++ + + + +++W L + Sbjct: 466 EEQLQEAVLLAALVTHPGLVARFEAGIEAVDFLGEGHRQVWRALMRHALPGMEVGDLRAR 525 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 G +LL + ++ + VR+ + A R + E+ Sbjct: 526 IAAEAGEGLEKLLSESHLRIAPGAREGDEDDLAEQCVREALAKKAARIAARREIEEALED 585 Query: 598 I 598 I Sbjct: 586 I 586 >gi|310816222|ref|YP_003964186.1| DNA primase [Ketogulonicigenium vulgare Y25] gi|308754957|gb|ADO42886.1| DNA primase [Ketogulonicigenium vulgare Y25] Length = 673 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 198/598 (33%), Positives = 313/598 (52%), Gaps = 18/598 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WDRRK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 28 MSLPAGFLDELRGRLSLAQVVGRKVVWDRRKSNPGKGDMWAPCPFHQEKSASFHVDDRKG 87 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F E+++ LA AG+ +P DP+ +++ +T L + Sbjct: 88 YYYCFGCHAKGDAISFVRETENVGFTEAIEILAREAGMQVPARDPQSQQRADRRTQLSDV 147 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E F+ LK + YL +RG+ A + + LGYAP R L HLR KG + Sbjct: 148 MEQVVQFYRLQLKTQSGEGARAYLQKRGLSPAAWDRWDLGYAP--RAGLFHHLRDKGVAL 205 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++++G+++ D+ +DRFR+R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 206 DLMVDSGMVVVPDDGREPFDRFRDRIIFPIRDARGRAISLGGRAMDPAAPAKYLNGPETP 265 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV-QNVVSSLG 299 LF KG+NL+N A K +I+ EGYMDV++L +AG V+ LG Sbjct: 266 LFDKGRNLFNMGPAREAAGK----------GKPLIVAEGYMDVIALSEAGFGAAGVAPLG 315 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+T QL L+W+++ ++ DGD G+RAA + +DL L L+ G + F LL G+DP Sbjct: 316 TAVTADQLALMWRITDEPLIALDGDTAGMRAAMRVVDLALPLLVAGKGLRFALLPEGQDP 375 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D I+ G A + +I ++P+V ++W+RETE + ++P+ RA L+ L+ I I D Sbjct: 376 DDLIKARGAPAMQAVIDAAMPMVRLMWQRETEGKVIDSPERRAALDKQLRALIMTITDAS 435 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R +Y + +RL+Q + E W+ + GP+ S L S + Sbjct: 436 IRKHYGDEV-NRLRQSLYGPVAEAKPGKLQWRPGKKATAPSGPTAAARASMLA--GSSDQ 492 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LR A +L TL++ P IL E EL + + + + L + + + L I Sbjct: 493 ERLRVAVILATLLSCPEILPEFELELERMACHDPDHRDLRAAILR--NAHQPDLRAAIED 550 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L L + + A + E + + + + A R + E+ Sbjct: 551 SLGHMPLERLFAERHVAISPAVRRAGDAEVARLCLAEELAKLNARRGHAREIEEALED 608 >gi|297180870|gb|ADI17075.1| DNA primase (bacterial type) [uncultured alpha proteobacterium HF0010_30A23] Length = 652 Score = 403 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 188/585 (32%), Positives = 287/585 (49%), Gaps = 20/585 (3%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F+ ++ + +S+++G V R+ ++ ACCPFH+EKTPSF+ N+ KGFY Sbjct: 39 IPPAFLDEIRTRLDLSDVVGARVKLQRKGR-----EWTACCPFHNEKTPSFYVNNEKGFY 93 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GDH+ F+ G +FIE+V+ LA AG+ +P DP +K + L + Sbjct: 94 HCFGCGAHGDHIGFVMNHDGQTFIEAVETLAGQAGLDMPKADPDAARKAERAKGLKEAMV 153 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A + +L Y+D+RG+ +E F LGY+PD+R L + L +GFS + Sbjct: 154 AAVKAYQEALNQPDGAVARAYIDKRGLTPETVERFALGYSPDARDWLFKKLIAQGFSAQV 213 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +I+A L ++ +D FR RL+FPI +G +AFGGR L +GE KYLNSP+T +F Sbjct: 214 LIDAALAKAPEDGRPPFDMFRGRLMFPIWDRQGNPVAFGGRILGEGEP-KYLNSPDTAIF 272 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG+ LY A I++VEGYMD ++L QAGV+N V+ LGTAL Sbjct: 273 HKGQLLYGHHLARKSAH----------DRGEILVVEGYMDAIALGQAGVENAVAPLGTAL 322 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE LRLLWK+ P ++C DGD G RAA + + L L G V F L G+DPD Sbjct: 323 TEDHLRLLWKMVPSPIVCLDGDAAGQRAARRTAERALPLLRAGKSVKFATLPEGQDPDDL 382 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ G A + ++ +S L +W+ E + N ++RA L + + ++D L Sbjct: 383 LKHGGLRALQTVLSQSETLPAAIWRWERQAMLRNDAEQRAALWSRISAGLKSVEDSSLNT 442 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + R + F + G GR W++ N P+ L Q + Sbjct: 443 ALEADMIGRFEASFGHHPFRKQGSGRQWQRQNGAKASWNRPATGLSQPGNDRVSALDTTG 502 Query: 482 LREAA---LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L L +NHP +L + LA + + +L + L ++ E +H Sbjct: 503 LARRQYEVLFAAFLNHPDLLDLYGENLATLTMLDVDLAQFRDALVQALFQEVTLDSEHLH 562 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 L ERG ++K+L A +A +V +G + A Sbjct: 563 PHLSERGLDSMVKRLTGPDTQLHAGFAKPDARKDEVIEGLETLFA 607 >gi|126462811|ref|YP_001043925.1| DNA primase [Rhodobacter sphaeroides ATCC 17029] gi|126104475|gb|ABN77153.1| DNA primase [Rhodobacter sphaeroides ATCC 17029] Length = 643 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 200/646 (30%), Positives = 321/646 (49%), Gaps = 21/646 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N KGD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ L AG+ +P DP+ +K ++ L + Sbjct: 61 FYYCFGCHAKGDAIAFVKDTENVGFMEAVEILTREAGMAMPARDPRAAEKADRRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL R + E F +G+APD+R +L + L KG + Sbjct: 121 MEEAVRFYRLQLRTGAASAARDYLARRRLSEEGQERFGIGFAPDARQALFQALTGKGIAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL ++ YDRFR R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPEDGGAPYDRFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKGRNLYNAGPAREAAGK----------GQPLVVAEGYMDVIALSEAGFRATVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ P V+ DGD G+RAA + +DL L L G + F +L G DPD Sbjct: 291 AITEDQLRLMWRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G +A +++ + P+V +LW+RETE F++P+ RA L+ L+ + I D + Sbjct: 351 DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRAAVQRIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK-K 479 R +Y + ++F + + + + R P S L + + Sbjct: 411 RRHYGDELNRLRMEIFGTSVPRRA----FHRGGKREPLAVAPHPSTRASLLATAAGERIE 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +R +L T HP ++ E L + + + + L L + + + Sbjct: 467 EEMRLGVILATCALHPTLIHEFETALEALELSDPDDRALHRVLLAAAG----MAEADTAR 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + G L++L S ++ R + LA + R ++ EE Sbjct: 523 GVIRAEAGPALERLLALTHVRICPSVRHPGDLEMARMCLAEELAKLEARRGARQEIEEAV 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + +A + +G + + H + +++ + E +S Sbjct: 583 EDLAGLVDEGLTWRLSQAAEARH--RAERARLDDSSDLGEDRAALS 626 >gi|163733985|ref|ZP_02141426.1| DNA primase [Roseobacter litoralis Och 149] gi|161392521|gb|EDQ16849.1| DNA primase [Roseobacter litoralis Och 149] Length = 632 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 207/590 (35%), Positives = 314/590 (53%), Gaps = 17/590 (2%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 +G+ V WD RK+N KGD WA CPFH EKT SFH +D KGFYYCF CH KG+ +SF+ Sbjct: 2 VGRKVMWDARKSNQGKGDMWAPCPFHQEKTASFHVDDRKGFYYCFGCHAKGNAISFVRET 61 Query: 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140 F+E+V+ LA AG+P+P DP+ ++K +T L ++E+A ++F L Sbjct: 62 ENVGFMEAVEILAGEAGMPMPERDPQAQQKADRRTQLAEVMELAVNYFRLQLNTGAAAEA 121 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL+ RG+ S +E +++GYAPD L +HL+ K +E I+ AGL YD Sbjct: 122 RNYLERRGLRSETLERWEIGYAPDQWQGLWDHLKAKNVEDELILAAGLAKPSTKGGKPYD 181 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 FR R+++PIR +RG+ IAFGGR + ++ KYLNSPET LF KG++LYN A K Sbjct: 182 TFRGRIMYPIRDARGRAIAFGGRAMDPNDNAKYLNSPETELFDKGRSLYNQKEARTAAGK 241 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 +I+ EGYMDV++L AG V+ LGTA+TE QL++LW++SP ++ Sbjct: 242 ----------GQPLIVAEGYMDVIALDSAGFNASVAPLGTAITESQLQMLWRISPEPIVA 291 Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 DGD GLRAA + IDL L L G + F ++ G+DPD +R G A +KL+ E++P Sbjct: 292 LDGDTAGLRAAMRLIDLALPLLEAGRSLRFAIMPAGKDPDDLLREQGVAALQKLLDEAMP 351 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 +V +LW+RETE F++P+ +A LE L++ + I+D ++ +Y+QA++D QLF+ Sbjct: 352 MVQLLWQRETEGGVFDSPERKATLEKALRDKVMLIRDPSIQSHYAQALKDMQWQLFRPQR 411 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQ 499 + + + + P S+L + LREA LL P++++ Sbjct: 412 KNNPVWQK--NRRQWGSSPATPLTSTKASALASAQTIDVTEALREAVLLAAFATCPSVIE 469 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + +L + + Q L L EI + E L+ L Q Sbjct: 470 DFESDLERMNCTDRTHQALRDLLLR----NMSATESEIRALVSETLGPNTLENLLAQSHV 525 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 A + T + VR + A R L+ + E + ++ + +G Sbjct: 526 AIVPCIRTPGDAEKVRMTVAEEFAKLSATRGLNAEIAEASEDMSGLADEG 575 >gi|294011420|ref|YP_003544880.1| DNA primase [Sphingobium japonicum UT26S] gi|292674750|dbj|BAI96268.1| DNA primase [Sphingobium japonicum UT26S] Length = 631 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 205/650 (31%), Positives = 310/650 (47%), Gaps = 31/650 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ F+ +L +S LIG+ V + +Y ACCPFH+EKTPSF ND KG Sbjct: 1 MSLSPAFLDELRARTSLSTLIGRTVKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G F+E+V+ LA AG+ +P DP+ K+ + L + Sbjct: 56 FYHCFGCGAHGDAIRWMTDQRGLPFMEAVKELAQAAGMEVPAPDPRAAKRAEQAKGLHDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A FF L YL +RGI + + F G++PD R L+ L G Sbjct: 116 MAAAQGFFEEQLGGIEGAEARAYLQKRGISAATAKAFGFGFSPDGRGRLKAALNVFGEP- 174 Query: 181 EKIIEAGLLIDGD-------NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 +IEAGLLID D SYDRFR RL+ PIR RG+VIAFGGR L GE KY Sbjct: 175 -LLIEAGLLIDPDGAEPDGGRKRDSYDRFRGRLMLPIRDIRGRVIAFGGRILGAGEP-KY 232 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSP+T LF KG+ LYN A +++ R +++VEGYMDV++L QAG + Sbjct: 233 LNSPDTPLFDKGRTLYNIDRASPASRQAGR----------VVVVEGYMDVIALAQAGFEE 282 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+ LGTALTE+Q+ LWK++ +LCFDGD G +AA +A L L PG + F L Sbjct: 283 AVAPLGTALTEHQIERLWKMADVPILCFDGDSAGQKAAIRAATRALPLLRPGMSLAFATL 342 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD IR G A E ++ + PLV+ LWK E +TP+++A L+ L + Sbjct: 343 PAGQDPDDLIRAQGPQAMESVLAAAEPLVERLWKYEQGAAPLDTPEQKAALKQRLSAITD 402 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKY-----ITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I +R +Y A R+R LF + G G R P Sbjct: 403 AIAHPDVRAHYVHAFRERYDALFFARAAFQPRHQRGGSGARSGWQRDRRGNWKPPLPPAG 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S S A+L +L+ HP + + LA +R + L +L + + + Sbjct: 463 SEARAIGASGMEQRLLRAVLASLLRHPEQIALHREMLAGLRIADPVLAELLNAMIAASFS 522 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 ++ + + L + + K + R ++A+ VR+ +A+ + + Sbjct: 523 KETVETDGLLTILGQGEVYNMAKGMLR-ADTFTFTPHRSKADSDRVRRDLDEAIRVMAQG 581 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 L E ++ + + + + + ++ ++ E +I Sbjct: 582 PELEAALAEATRRATDDLNEDSFAEQQRVRRLKLDHDRRLAELAQSEDII 631 >gi|118591039|ref|ZP_01548439.1| DNA primase [Stappia aggregata IAM 12614] gi|118436561|gb|EAV43202.1| DNA primase [Stappia aggregata IAM 12614] Length = 648 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 200/645 (31%), Positives = 314/645 (48%), Gaps = 26/645 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + ++ + +S+++G+ V WDRRKT KGDYWACCPFH EK+PSFH +D + Sbjct: 1 MRFEPRLLDEIRARLTLSDVVGRRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GDH +FL G SF E+V+RLA AGV LP DP+ ++EK + L + Sbjct: 61 RYKCFGCGASGDHFTFLCETEGLSFPEAVERLAEQAGVGLPAPDPQAARREKKRAGLADI 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A FF R Y +RG+ + F+ G+APDSR +L+ +L + E Sbjct: 121 CEMAAQFFQAEFAGPRGDAARAYTQKRGLAQETLREFRFGFAPDSRDALKGYLAAREIPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGL+I ++ SYDRFR RL+ PI RG+V+AFGGRTLS KYLNSPET Sbjct: 181 AAMIEAGLIIKPEDGRPSYDRFRGRLMIPIHDDRGRVVAFGGRTLSPDGQPKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A KS ++VEGY+D ++L QAG+ +VV+SLGT Sbjct: 241 LFHKGVMLFNAHRAREPAFKS----------GEAVVVEGYLDAIALWQAGIHHVVASLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LWK +P V+CFDGD G+ AA++AID + L G F L G DPD Sbjct: 291 AFTEDQVVRLWKFAPEPVICFDGDAAGVSAAHRAIDRIFPVLKSGYSFQFCFLPDGMDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G T F + + L +++W RE +TP+ +A LE + I I+D+++ Sbjct: 351 DLIKQRGVTGFHDEVERAQSLFEVVWDREISVSRLDTPERKAALEKRFDDLIGTIRDERV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y ++ +L LF + + + R + + + Sbjct: 411 RRRYQLDLKFKLSNLFFEQARQSR------QGGKGGRSGGAAEAGVPLGMARERVSATHD 464 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L + P +L ++ + + + N+ ++L L + + E+ Sbjct: 465 FGTERLVLGLSMRFPYLLDRNFERFSRLPFANDLHRELRDILCRIVDDLEATPIAELTSA 524 Query: 541 LCERGFGELLKQLD---------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E +++ ++ R + L + A + L Sbjct: 525 F-EEPLRDIMGEMMLETIGMQQQRGAEFSALTHRFPLLKSNPPEDFIEAAYLHFLDVLEL 583 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + ++E+ ++A + + + ++ ++ + + EA Sbjct: 584 NALEDELSSELATADEQLDEHSWMRIQALTQDLSRRREECARDEA 628 >gi|296133799|ref|YP_003641046.1| DNA primase [Thermincola sp. JR] gi|296032377|gb|ADG83145.1| DNA primase [Thermincola potens JR] Length = 609 Score = 400 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 173/637 (27%), Positives = 282/637 (44%), Gaps = 47/637 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P D + ++ I ++ +Y+ ++ N Y CPFH+EKTPSF + K Y Sbjct: 4 IPDDIVDEIRQRNDIYTIVSEYLRLKKQGRN-----YVGLCPFHNEKTPSFTVSPEKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 YCF C G+ +SF+ + SF E+V+ LA AG+ +P + +K + + RL Sbjct: 59 YCFGCGAGGNVISFIMQIENLSFPEAVKFLADKAGIVIPEGKNSAAAQKLRQREKAYRLN 118 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+ +F+H+ L + YL +RGID IE F+LG+AP SL L+++G+S Sbjct: 119 ELVKNFYHYILLNHDIAAGAREYLLKRGIDRATIEKFQLGFAPPGWDSLLGFLQKRGYSP 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + GL+ YDRFRNR++FPI + VI FGGR L KYLNSPET Sbjct: 179 DYLEAQGLVTKRSTGTGYYDRFRNRVMFPIWDHKNNVIGFGGRVL-DDSLPKYLNSPETS 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K KNLY A+ ++ +++VEGYMDV++ Q GV NVV+SLGT Sbjct: 238 VFNKSKNLYGINFAIPAIR----------EQEHVVIVEGYMDVITCHQYGVSNVVASLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T Q ++L + +P + + +D D G+ A + +++ G RV V + G+DPD Sbjct: 288 AMTREQGKILVRYAPNVYIAYDADTAGVAATLRGLEI---LQDAGCRVKVVTIPDGKDPD 344 Query: 361 SFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 IR G +F +L S L++ + E NT + + + L I I + Sbjct: 345 ELIRKKGPESFTRLIREGSKSLIEYKLAKGMEKFDCNTIEGKIGIVGELIPNIIRIPSEI 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-----------KGPSQRLMQ 468 R + I L E Y + ++KN D+ K P Sbjct: 405 EREEQIKLISTTLGISSHSLWGEIKKYQQKFRKNMAKWDKITLERDNNTEFKAPKGTPKV 464 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFV 527 ++ + E L+ LI H + +EL + + + E + ++L Sbjct: 465 TNPEQVIKKSARRQAEDNLIRLLITHQELYGRVKEELG-VNFTDVPEYIVIINYLDEILA 523 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 F P ++ ++ + L L Q E D + + + Sbjct: 524 SGIEFEPAAFIDKVADKELRQKLSALMMQ-----------EEPPGDPHSLIADYIKV-IK 571 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + ++E + KQI Q + E L+ ++ Sbjct: 572 DDDIKCRRETLLKQIEQAEQSKDMELRDKLLMEFSKL 608 >gi|159044805|ref|YP_001533599.1| DNA primase [Dinoroseobacter shibae DFL 12] gi|157912565|gb|ABV93998.1| DNA primase [Dinoroseobacter shibae DFL 12] Length = 650 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 213/618 (34%), Positives = 316/618 (51%), Gaps = 24/618 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ + G+ + WD RK+ KGD WA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRSRVSMAQVAGRKLIWDMRKSQQGKGDMWAPCPFHQEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YYCF CH KGD +SF+ F+E+V+ LAA AG+P+P DP+ K +T L + Sbjct: 61 YYYCFGCHAKGDAISFVRETENVGFMEAVEILAAEAGMPMPARDPQAAAKADRRTQLSEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF +LK A YL RG+ A +++G+APD L +HLR KG +E Sbjct: 121 AEQAVQFFRLNLKTAAAAEARAYLVRRGLSEEAQARWEIGFAPDGWQHLWDHLRGKGVAE 180 Query: 181 EKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I++AGL YD FRNR++FPIR +RG+ IAFGGR + + KYLNSPET Sbjct: 181 DLILDAGLAKPSRKEGGRPYDVFRNRIMFPIRDARGRAIAFGGRAMDPEDGAKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF K + L+N A KS S +I+ EGYMDV++L +AG V+ LG Sbjct: 241 ELFDKSRVLFNHARAREAAGKS----------SPLIVAEGYMDVIALSEAGFAGAVAPLG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+TE QL LLW++SP V DGD GL+A + +DL L + G + F +L +DP Sbjct: 291 TAVTEPQLELLWRISPEPVFALDGDRAGLQAGQRVVDLALPLITAGKSMRFCILPEKQDP 350 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D IR G A L+ ++ P+V++LW+RET + F++P+ +A L L+ + I D Sbjct: 351 DDVIRAGGAEAMATLLDQAKPMVELLWQRETAGKVFDSPERKAALGKALRQAVAKITDPT 410 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ +Y Q ++ RL LF ++ R R Q+GP+Q S+LV Sbjct: 411 IKQHYGQEVKTRLDALFGYGPSK---GRSGPAGPWRKRGQEGPTQTTRSSALVTADRDD- 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+E+ +L TL HP ++ E +L D R+ ++ + L S P+ Sbjct: 467 -LLQESVILATLCAHPGLIAEFESDLLDHRFGTEAFARMAARLASMM-----PDPDAPEI 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + L+ + + S + R + A R+ E+ Sbjct: 521 SLEGTSCAQTLEAILSERHVTISPSLRPGCDPEVARMTVAEGFAKLAARTGWQREMEDA- 579 Query: 600 KQIAQVTAKGEAEKTAIL 617 I + + + T L Sbjct: 580 --IEDFASVADEDLTWRL 595 >gi|229543824|ref|ZP_04432883.1| DNA primase [Bacillus coagulans 36D1] gi|229324963|gb|EEN90639.1| DNA primase [Bacillus coagulans 36D1] Length = 601 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 147/630 (23%), Positives = 275/630 (43%), Gaps = 38/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ I ++ +YV ++ N Y+ CPFH E TPSF + K + Sbjct: 5 IPNEKIDEIRRSSDIVEVVSEYVQLKKQGRN-----YFGLCPFHGEHTPSFSVSPDKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 +CF C G+ +FL + G SF E+ ++LA A + L VV E+K + + ++ Sbjct: 60 HCFGCGAGGNVFTFLMDIEGISFQEAAEKLAQKAHIELGVVLRHEEQKNIDPKRRQMLEA 119 Query: 121 IEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ +HH L + YL RG AIE F +GYA + L+++GF Sbjct: 120 HELLQKLYHHLLLHTKEGEPALKYLRGRGFTDEAIEKFGIGYALPAWDFAANMLQKRGFP 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + E+GL+I + +DRFR+R++FPI +G ++AF GR + K E KYLNSPET Sbjct: 180 LSVLEESGLVIRNEKDGKYFDRFRDRIMFPIMDEKGNMVAFAGRAVRKQEHPKYLNSPET 239 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF+K K L+N A ++K ++ EGY DV+S +AGV+N ++++G Sbjct: 240 PLFNKSKLLFNLNRARGPIRKK----------QQAVIFEGYADVISADRAGVENGIATMG 289 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T++T +R++ +L+ +V+C+D D GL AA++A + G V + G DP Sbjct: 290 TSITPEHVRMIKRLTDGVVICYDSDQAGLTAAFRAGKM---LSENGCEVRVAQMPDGLDP 346 Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D +I +G F +I SL + + N++ E+ + I +++ Sbjct: 347 DDYINQHGGEKFRMDVIGASLTFMAFKMQYFRMNKNLQNEGEKLAYIEEVIQEIAKLENP 406 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + + + YG + R + P++ + + + ++ Sbjct: 407 VEKDLYLRQLSEEFSLSLDALKEQERQYGS---RETGTRKRSRPAENPV-PAHEEARMLP 462 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E LL ++ I + L + + +E Q ++++L + E Sbjct: 463 ANMTAERRLLWHMLRDGEIAYKVKDFLGENSFYGDEHQAIFTYLLGWYEEGNPPDTSAFL 522 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + + +++ L + + Y Q + +++ + + Sbjct: 523 SYLPDAKLQRIAAEIEMMTVGGELT--------DEELEDYVQYVLKHQKLLRIQEKLRAQ 574 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + +K L + + + Sbjct: 575 K----DAERQNDFQKALQLAGEIVALRKSM 600 >gi|51891725|ref|YP_074416.1| DNA primase [Symbiobacterium thermophilum IAM 14863] gi|51855414|dbj|BAD39572.1| DNA primase [Symbiobacterium thermophilum IAM 14863] Length = 623 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 170/646 (26%), Positives = 280/646 (43%), Gaps = 51/646 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + F ++ I +I YV +RR Y CPFH EKTPSFH F Sbjct: 3 RFDQAFKDEVRARNDIVEVISAYVKLERRGN-----RYVGLCPFHSEKTPSFHVVPDGQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 YYCF C GD +FL +F E++ +LA A +PLP P+ E+ + + D+ Sbjct: 58 YYCFGCKASGDVFTFLMEREHLTFYEALVQLAQRARIPLPQEERTPEEERAYRERRDMYA 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +++A F+HH L K YL RG+ I F+LG+AP + F Sbjct: 118 ALDLAARFYHHQLFTPAGKPGLDYLLGRGLTEETIRRFRLGWAPG--RGALFRALRDRFP 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + +AGL++ + D F R++FPI G+VI FGGR L GE KY N+ ET Sbjct: 176 PQILQKAGLIVPRRDGPGFMDVFFERVMFPIADLSGRVIGFGGRIL-GGEGAKYKNTAET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF K L+ A ++ + + ILVEGYMDVL QAG+QNVV+ LG Sbjct: 235 PLFVKRHVLFGLDQAKEAMR----------ARNQAILVEGYMDVLMPHQAGIQNVVAPLG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT+ Q+R++ + + ++++ FD D G A + + G V + L G+DP Sbjct: 285 TALTDEQVRIIRQQAQQVIVAFDMDTAGQLATLRGLQ---KLYDSGCDVRVLQLPDGKDP 341 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D FIR +G AF + I ++LPL++ TP+E A+ + + ++++ Sbjct: 342 DEFIRTHGAPAFVERIEQALPLIEFRLSLALPATRRPTPEEMAKAVESVAQVLADVRNEV 401 Query: 420 LRYYYSQAIRDRL----------------QQLFQKYITEHSGYGRYWKKNARHRDQKG-P 462 +R Y + DRL +Q+ + + N R P Sbjct: 402 VREAYVDQVADRLAGDNPLAKPDLKLAIDRQMNRLLRRGFQHNLPDSRNNRRGPGAPASP 461 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + ++ E LL L+ HP +L+ EL + + + ++++ Sbjct: 462 GPTRPRPDQAPVTQAEGARRAERVLLYLLLEHPGLLRTVEAELGEEPFSDPHHRQIYRAG 521 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + E + RL +R +Q+ ++ + ++ E D + Sbjct: 522 RALLAEADPLAGGGVIARLFDRLSDPEARQVLTEMAVTPMLTSDPEKEAADCIEKI---- 577 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKG---EAEKTAILISILHEVH 625 R SR+ E++E QI A + ++++ ++ Sbjct: 578 ----RKHRDSRRLEDLENQIKAAAAASRRVDPAIWNEYMALVRKLK 619 >gi|332975852|gb|EGK12730.1| DNA primase [Desmospora sp. 8437] Length = 618 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 172/638 (26%), Positives = 298/638 (46%), Gaps = 42/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I + H I +++GQ V + N ++ CPFH E+TPSF + K Sbjct: 12 RIPDDVIDRIRDHFDIVDVVGQTVQLKKSGRN-----FFGLCPFHSERTPSFSVSPDKQI 66 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 YYCF C GD + FL +F+E++ +LA AG+ LP ++ + +E+ + L + Sbjct: 67 YYCFGCGAGGDVIRFLMETEQLTFVEAITQLADQAGIQLPRSQGEMRRDPEEEKRQQLRK 126 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A +HH L++ + YL ERGI +E F+LG++PDS + L L+++G Sbjct: 127 VTELAARLYHHLLLESDHGAQAREYLTERGITRGTMEEFQLGFSPDSYHFLHSFLKRRGV 186 Query: 179 SEEKIIEAGLLIDGDNSATS---YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E+ +EAGLL++ D+S +DRFR R++FPI ++G+VIAFGGR L +G+ KYLN Sbjct: 187 DEKTAVEAGLLVERDSSRGPSACFDRFRGRIMFPIHDTQGRVIAFGGRVLGEGQP-KYLN 245 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+KGK LYN A ++K + IL EGYMDV+S QAGV V Sbjct: 246 SPETTLFYKGKFLYNLHRARKAVRK----------AEQAILFEGYMDVISAWQAGVFTGV 295 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTALTE Q R++ + + V+C+D D G AA +A ++ G V + Sbjct: 296 ATLGTALTESQARVIRRNAGTAVICYDSDRAGQNAADRAAEV---LKEQGCVVKVAKMPP 352 Query: 356 GEDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R G +F ++I ++LP + + +E+ I Sbjct: 353 GMDPDDYVRSRGADSFSGEVIAQALPYPAFKLESLKAGFNLRDEEEKMGYLTRAIEVIAE 412 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + +Y + + + E + + + + + + G Sbjct: 413 LPRAIEQDHYLRRLAEEFHLSLDALKQELRRIASKKRGSNGDKGTGKWNNGYHRGKHMVG 472 Query: 475 KLSKK--PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E LL +++ ++ + + ++ + ++L+S + E Sbjct: 473 QERRPQAHEQAEKRLLTAMMHDRSVADRVMKTVGA-DFNIEIHAAIAAYLYSYYSEGHPA 531 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 P + L + +L R+ + T E ++ + + R L Sbjct: 532 DPGRFLRYLKD-------DRLLREAS-GLVILDTPEVTEEEISDYIR-----HIRNYPLH 578 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ E ++Q+ Q G+ + L L + ++H+ Sbjct: 579 KEIERKKEQVKQAERAGDIAEATRLGVELIRLREKVHK 616 >gi|239827753|ref|YP_002950377.1| DNA primase [Geobacillus sp. WCH70] gi|239808046|gb|ACS25111.1| DNA primase [Geobacillus sp. WCH70] Length = 601 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 167/634 (26%), Positives = 285/634 (44%), Gaps = 46/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++I YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRAVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTD 116 ++CF C G+ SFL + G SFIE+V+RLA A V L + + Sbjct: 59 FHCFGCGAGGNVFSFLMDIEGISFIEAVKRLAIKANVDLADLELDDANKQSRADTGETKI 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 ++ E+ F+HH L + YL RG I+ F++GYAPDS + L Sbjct: 119 MVEAHELLKKFYHHLLVNTKEGQEAFDYLQARGWTREIIDQFEIGYAPDSWDFAVKLLSG 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +GFS E + +AGL+I +N +DRFR+R++FPI + G + F GR L +G+ KYLN Sbjct: 179 RGFSLELMEKAGLIIRKENGGGYFDRFRHRIMFPIHNHHGDAVGFSGRLLGEGQP-KYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKGK LYNF A +++K IL+EG+ DV+S QAG+ + V Sbjct: 238 SPETPIFHKGKILYNFHQARLHIRK----------HQEAILLEGFADVVSAVQAGIAHSV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GTALTE R+L + +++C+DGD G+ A ++A +L G V + Sbjct: 288 ATMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEL---LADAGCHVKIATIPD 344 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD +I+ YG F +I S L+ + ++ +++ + I+ Sbjct: 345 GLDPDEYIKKYGSDRFRRDIIDASSSLMAFKMMYFRKGKNLQNENDKIRYIEEVLQEISK 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + YY + + D + + + + + ++ P L + Sbjct: 405 LSNPIEWDYYLRQLADEFSLSLSALQEQLNRHRNNKTHSNNAQSKEAPRPPL------QK 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E LL ++ + Q +A ++ E + + +++++ + E Sbjct: 459 KLLPAFQNAERMLLAHMLRSRDVAMIVQQTIAG-AFNIEEHRAIAAYIYAFYEEGNEPDV 517 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + RL + L V + L T E + ++ + L K + Sbjct: 518 SLLLSRLPD--------DLKPLVTELSLLLITDEISNQELNDYMRHVLNYPKWL-----K 564 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +E E++ + K + A + + E+ + Sbjct: 565 LKEKEQEKIEAERKKDFLTAARIAKEIIEMKKML 598 >gi|209965298|ref|YP_002298213.1| DNA primase, catalytic core, putative [Rhodospirillum centenum SW] gi|209958764|gb|ACI99400.1| DNA primase, catalytic core, putative [Rhodospirillum centenum SW] Length = 620 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 206/640 (32%), Positives = 309/640 (48%), Gaps = 31/640 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P +F+++L + +S+++ + + R +Y A CPFH EKTPSF+ ND+KG Sbjct: 1 MALPPNFLEELRARLSLSDVVMKRMRLIRAG-----HEYKAPCPFHKEKTPSFYVNDAKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CF C GD ++F+ SF+E+V+ LA AG+ +P P+ + + Q L L Sbjct: 56 FFHCFGCGAHGDAIAFVMRHDNLSFMEAVELLAGEAGLSVPKASPEAVARFERQKSLFDL 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT F L ++ YL RG+D I F+LGYAP LR L Q G+ E Sbjct: 116 VERATRHFEQQLGLPAGRQALEYLRGRGLDDDTIARFRLGYAPHDGAGLRAELEQAGYGE 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGL + F NR+IFP+ RG+V+AFG R LS KY+NS +T Sbjct: 176 ADMIEAGLFKRPEPGRGLRAFFWNRVIFPVTDRRGRVVAFGARLLSGD-GPKYINSGDTP 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LYN A +++ EGYMDV+S AG V+ LGT Sbjct: 235 LFHKGNILYNLSRARQAA----------VEGRPVVVTEGYMDVISCVTAGFDGAVAPLGT 284 Query: 301 ALTEYQLRLLWKLSPR----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ALTE Q+ LWKL+P +LCFDGD G RAA +A++ +L L+P + L Sbjct: 285 ALTEAQILELWKLAPEGRRTPILCFDGDSAGRRAAARAVERLLPLLLPDHSARVAFLPEK 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDS IR G AF+ ++ + PL D+LW E + R PD RA LE L I+ Sbjct: 345 EDPDSLIRAGGAAAFQAVLDRARPLADVLWDLEAQGRDLAQPDARAGLEAALAARCAAIQ 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D ++R Y Q +RDRL ++ G ++ R P L + G + Sbjct: 405 DARVRRAYEQDMRDRLFAAARQGRGGRGGRAGTGRRGMRPLVDGLPVSPLYDARFRTGLI 464 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 +P E LLL +++HP + +E ++LA+ + L+ L + E Sbjct: 465 RTEPRQMERLLLLPVLHHPELFEEFGEQLAEAVFATPALETLRCAMVEVLTANSALDAAE 524 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 +H L RG E L L + A A+I R G+ Q + L + L + Sbjct: 525 LHSHLSSRGLSETLDGL---LSADAPRFAHPGASIDAARTGW-QGVWLNSQEVALQAELR 580 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E+++A+ + + ++ + + + + A Sbjct: 581 DAERRLAE-------QFSQENLARVQALRQEALRRRGHSA 613 >gi|260576519|ref|ZP_05844508.1| DNA primase [Rhodobacter sp. SW2] gi|259021242|gb|EEW24549.1| DNA primase [Rhodobacter sp. SW2] Length = 650 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 198/613 (32%), Positives = 309/613 (50%), Gaps = 18/613 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L I +S ++G+ V WD RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPTGFLDELRTRISLSQVVGRKVTWDMRKSNQGKGDMWAPCPFHQEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD ++F+ F+E+V+ LA AG+P+P DP+ +K ++ L+++ Sbjct: 61 FYYCFGCHAKGDAVTFVKETENLGFMEAVELLAREAGMPMPARDPQAAQKADRRSQLVQV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A ++ L+ Y+ R + A F++GYAP+ R L + L QKG + Sbjct: 121 MEEAVKYYRLQLQTGAGAAARDYITRRRLSPEAQARFEIGYAPNVRNGLLQALTQKGIAA 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL D T YDRFR+R+IFPIR RG+ I+ GGR + KYLN PET Sbjct: 181 DLLVEAGLCARPDGGGTPYDRFRDRIIFPIRDGRGRAISLGGRAMDPNAQAKYLNGPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG NLYN A K +++ EGYMDV++L +AG V+ LGT Sbjct: 241 LFSKGHNLYNHAPAREAAGK----------GKPLVVAEGYMDVIALVEAGFTAAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++ P ++ DGD G+RA + +DL L L G + F LL G+DPD Sbjct: 291 AVTEDQLRLMWRIHPEPIIALDGDAAGIRAGLRVVDLALPLLEAGQGLRFALLPGGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G A ++++ ++ P+V +LW+RETE R F++P+ +A L+ L+ + I D + Sbjct: 351 DLIKAQGAAAMQRVLDDARPMVQLLWQRETEGRVFDSPERKAALDKTLRAALKRIVDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +Y + I+ +LF + T+ + + + + + + +S L Sbjct: 411 RGHYGEDIKRLRWELFGQNGTQTARKPDFTPRKPGEKFTRFAAPEPPLASTRASALGAGA 470 Query: 481 SLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL TL+ HP ++ L + + L L Sbjct: 471 GGAEQLLESLLLATLVVHPGLIARFESALERLELAHPGHDALRGALLRH---GHRPDLTN 527 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + +L+ L Q + +ALA R R+ E Sbjct: 528 FRE-IIATEQRAVLESLFGQSHVQTAPPVRNAEDTDLANMCVAEALAKLHARRGARREIE 586 Query: 597 EIEKQIAQVTAKG 609 + + ++ + +G Sbjct: 587 DAVEDLSGLADEG 599 >gi|89070862|ref|ZP_01158101.1| DNA primase [Oceanicola granulosus HTCC2516] gi|89043550|gb|EAR49760.1| DNA primase [Oceanicola granulosus HTCC2516] Length = 640 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 200/591 (33%), Positives = 308/591 (52%), Gaps = 21/591 (3%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + + ++G+ V WD RK+N KGD WA CPFH EKT SFH +D KG+YYCF CH KG Sbjct: 2 RSRLSLGQVVGRKVMWDNRKSNQAKGDLWAPCPFHQEKTASFHVDDRKGYYYCFGCHAKG 61 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D +SF+ F+E+++ LA AG+ +P DP+ +K + +L+ ++E A F+ Sbjct: 62 DAISFVRETENVEFMEAIRILAGEAGLQIPESDPRAQKVADRRAELVEVMEQAVRFYRMQ 121 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 LK YL RG+D A +++G+AP +L +HLR +G ++ ++ AGL+ Sbjct: 122 LKTGAAAEARAYLAGRGLDEAAQGRWEIGFAPPGWQTLGDHLRGQGVPDKALLAAGLVRA 181 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 D YD FRNR++FPIR RG+ IAFGGR + ++ KYLNSPET LF K + L+N Sbjct: 182 SDKGRAPYDTFRNRILFPIRDPRGRAIAFGGRAMDPDDNAKYLNSPETPLFDKSRTLFNH 241 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311 A K + +I+ EGYMDV++L + G V+ LGTA+TE QL LW Sbjct: 242 GPAREAAGK----------GAPLIVAEGYMDVIALAEHGFGAAVAPLGTAVTEAQLAHLW 291 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 +++ ++ DGD G RAA + ++L L L G + FVLL G+DPD +R G A Sbjct: 292 RIADEPIIALDGDTAGQRAALRVVELALPLLTAGKSLRFVLLPEGQDPDDLLRAKGPAAM 351 Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 L+ E+ PL+ +LW+ TE R+F++P+ +A L+ L + I+DQ LR +Y +R Sbjct: 352 AGLLEEAQPLIRLLWQAATEGRTFDSPERKAALDKALADKTALIRDQGLRRHYDDELRQL 411 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +LF+ + +G G +K ++ ++ ++S++ + LREA +L L Sbjct: 412 KWELFRPPARKKAGGGMAFK----GKNAPAQARAGTRASMLATGTLSEDHLREAVILAVL 467 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 I +PA+L + EL + + + L L ++ L ER L+ Sbjct: 468 ICNPAVLHDFLGELEGLHFTDRTHGALAHALLIA------PPDADLRPYLAERLGPGALE 521 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +L L A R + LA R R+ E E+ + Sbjct: 522 KLFAD-THVALTPAVRRPGEDAARMCLAEELAKLNARRGHRREIAEAEEDL 571 >gi|307944277|ref|ZP_07659618.1| DNA primase [Roseibium sp. TrichSKD4] gi|307772623|gb|EFO31843.1| DNA primase [Roseibium sp. TrichSKD4] Length = 654 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 201/651 (30%), Positives = 317/651 (48%), Gaps = 35/651 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + ++ + +S+++G+ V WDRRKT KGDYWACCPFH EK+PSFH +D + Sbjct: 1 MRFDNRLLDEIRARLTLSDIVGRRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GDH FL+ G +F E+V+RLA AGV LP DP+ K+EK + L + Sbjct: 61 RYKCFGCGASGDHFKFLTETEGLNFPEAVERLAEQAGVALPAPDPQAAKREKKRAGLADV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A FF R + Y +RG + F+ GYAP +R +L+++L ++ E Sbjct: 121 CEMAARFFQMEFSAPRGEHARSYALKRGFTPQTLAEFRFGYAPSTRDALKKYLAERDVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++EAGL+I DN SYDRFR RL+ PI+ RG+V+AFGGRTL KYLNSPET Sbjct: 181 EVMVEAGLVIKPDNGRPSYDRFRGRLMIPIQDDRGRVVAFGGRTLDPDGQPKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A K+ R I+VEGY+D ++L QAG+ VVS+LGT Sbjct: 241 LFHKGVMLFNAHRAREPAYKAGRA----------IVVEGYLDAIALAQAGIPYVVSTLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LW+ +P V+CFDGD G AA++ +D + L G F L G DPD Sbjct: 291 AFTEDQVLRLWRFAPEPVVCFDGDAAGTAAAHRVVDRIFPVLKSGYSFQFCFLPDGMDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G FE + S L +++W RE +TP+ +A LE + I+ I+D ++ Sbjct: 351 DLVQKEGVPGFEAQVSSSQTLFNVVWDREVSVAQLDTPERKAALEKRFDDLIDTIRDPRV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y ++ RL LF + + G + GP+ Sbjct: 411 KRRYQLDLKFRLSNLFFEQARKGRGGRQQGAGRGERPTITGPAPSPDTPLFGT------- 463 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + + +P L + ++ +R+ + Q+ L + + + Sbjct: 464 ---ERLICGLSVKYPQFLDRHLERISALRFSDPVHQRFCDTLCALVNGLEETPVATVVDG 520 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIV-----------DVRQGYQQALALYKRFR 589 L + +L+ ++ ++ + + + D + + +A L+ Sbjct: 521 L-DETSRQLMAEVIQREGPSSDGAVSRHGAFSALAQRFPLLKVDPPEDFVEAAFLHFLDV 579 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 L + + +E+++ + E E + + + + + A EG Sbjct: 580 L---ELKTLEQELEREMEAAETELDEASWHRMQAITQDLSRRREECARDEG 627 >gi|254470055|ref|ZP_05083459.1| DNA primase [Pseudovibrio sp. JE062] gi|211960366|gb|EEA95562.1| DNA primase [Pseudovibrio sp. JE062] Length = 652 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 196/642 (30%), Positives = 318/642 (49%), Gaps = 22/642 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + F+ D+ + +++++G+ V WDRRK+ KGDYWACCPFH EK+PSFH ++ + Sbjct: 1 MRFDQLFLDDIRNRVSLTDVVGRRVTWDRRKSQPGKGDYWACCPFHSEKSPSFHVDERRN 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GDH FL G SF E+V+ LA +AG+ +P DP+ K+ + L + Sbjct: 61 RYKCFGCGESGDHFKFLMETEGLSFPEAVEELAGLAGIAMPAPDPQAAKRAAKRNTLTDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A ++ H ++ + Y+ RG+ + + F+ G+AP R +L++ L K SE Sbjct: 121 CEMAARYYRHMFQSVEGRAAQEYVQRRGLSAETLNEFQFGFAPPGRDNLKKALMAKDISE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++IE GLLI D+ SYDRFRNRL+ PI RG+ +AFGGRT+ KYLNSPET Sbjct: 181 AELIEVGLLIKPDDGRPSYDRFRNRLMIPIHDDRGRAVAFGGRTMDPDGQPKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A + I+VEGYMD ++L QAG++ V+SLGT Sbjct: 241 LFHKGTMLFNAHRARQPAY----------EAGQAIVVEGYMDAIALWQAGMKGTVASLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LWK + V+CFDGD G+ AA++A+D +L L G F L G+DPD Sbjct: 291 AFTEDQIMRLWKFADEPVICFDGDVAGISAAHRAVDRILPVLTSGKSFQFAFLPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I G +A + ++LPL +++W+RE+E+ +TP+ +A LE +++ + IKD+++ Sbjct: 351 DVINAGGTSAMYGELEKALPLSEVVWQRESEHARIDTPERKAALEKAVEDLVGTIKDERV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y +R +L LF + + G G R L + Sbjct: 411 QKRYRMDLRLKLSNLFYEESRRNRGQGGGRDGGWRGPQGGNDRASLAKVEAPDTPAYG-- 468 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + + +P + + ++ ++ + Y N + L + +I+ + Sbjct: 469 --VERSFCTMCLMYPELFERHFERISQLTYSNELHSMFMAALVRIATDLAEGAVTQIYNK 526 Query: 541 LCERGFGELLKQLD--------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 L ER + L + + + W A T + + + + Sbjct: 527 LDERFYQILQEAIVSSSGEEDGSKSSTLRRWDALTNRLQILKNDPPEDFVEMLFLNYADM 586 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + +E ++ T E + T S + + + + Sbjct: 587 LELRMLELELEHETRAMEQDLTEESWSRFQALQQDLSRRREE 628 >gi|83594215|ref|YP_427967.1| DNA primase [Rhodospirillum rubrum ATCC 11170] gi|83577129|gb|ABC23680.1| DNA primase [Rhodospirillum rubrum ATCC 11170] Length = 620 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 188/642 (29%), Positives = 312/642 (48%), Gaps = 29/642 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P F+ +L + +S+++G+ V R+ ++ CPFH+EK+PSF ND KG Sbjct: 1 MALPNAFLDELRARLTLSSVVGRRVKLARKGR-----EFLGLCPFHNEKSPSFTVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CF C GD + F +F E+V+RL+A AG+ +P + + + + Sbjct: 56 FFHCFGCGAHGDVIGFEMRAANIAFREAVERLSAEAGLEMPRETAEDRDRSRQAASHREI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A F+ +L+ + YL RG+D + F+LG++P +L+ L ++G E Sbjct: 116 MEMACAFYQKALRLPEGRGAMEYLRGRGLDDATLARFRLGFSPQG-GALKAALAREGVDE 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +++ GL++ D+ ++D FR R++FPI G+V+AFG R L +G+ KYLNSP+T Sbjct: 175 QAMVDLGLILRSDDGRPAFDYFRGRVMFPIGDPAGRVVAFGARILGEGQP-KYLNSPDTP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG +LYN A + S II+ EGYMDV++L +AG+ V+ LGT Sbjct: 234 LFHKGHSLYNLGPAREAAR----------QSGAIIVAEGYMDVIALARAGLGWAVAPLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LW+ P VLCFDGD G RAA +A++ L + PG + F LL G DPD Sbjct: 284 ALTEAQMEALWRTIPEPVLCFDGDGAGRRAAARAMERALPLIGPGRSLRFALLPGGRDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A +++ ++P +M W+ +E ++ TP++RA LE + + I D+ L Sbjct: 344 DLLREGGPVALRQVLDVAVPFSEMAWRELSEGQALTTPEQRAALEAAIDAFVAKIADRSL 403 Query: 421 RYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +Y QA+RDR + + + + +K + + P R L + Sbjct: 404 QGHYRQALRDRFWTVLRGDSARSRAERARKDPRKERKDGGRWRPGDRPPAPGLPVAAPAD 463 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 LRE LL ++NHP + + L + L L + K + Sbjct: 464 PARLRERLLLAAVLNHPEVFDHVGERLGAMILGEGALDSLRQDVVMILGGGKSLDMNGLW 523 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +L RG+ + L R A A+ V+ G+ L++R L + Sbjct: 524 SQLSARGYAADVAALTRPELLIHGKFARPGADPGLVKAGWDHTYDLHQR-GALQADCQRA 582 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 +++ + T + Q + E +++G Sbjct: 583 NERLGEH-------MTQEALEHFLAFKQQDKWAD--EPVLDG 615 >gi|328542885|ref|YP_004302994.1| DNA primase catalytic core, N-terminal domain family [polymorphum gilvum SL003B-26A1] gi|326412631|gb|ADZ69694.1| DNA primase catalytic core, N-terminal domain family [Polymorphum gilvum SL003B-26A1] Length = 648 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 205/637 (32%), Positives = 319/637 (50%), Gaps = 37/637 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + ++ + +S+++G+ V WDRRKT KGD+WACCPFH EK+PSFH +D +G Sbjct: 1 MRFDNRLLDEIRARLNLSDIVGRRVTWDRRKTQPGKGDFWACCPFHQEKSPSFHVDDRRG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GDH FL+ G SF E+V+RLA AGV LP DP+ ++E+ + L + Sbjct: 61 RYKCFGCGASGDHFRFLTDTEGLSFPEAVERLAGQAGVALPAPDPQAARRERKRASLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A FF R + Y R + ++ F++G+AP+SR +L+ HL +G E Sbjct: 121 CEMAARFFQMDFAGPRGEVARAYAARRNLSPATLQEFRVGFAPESRDALKRHLTAQGVDE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGL+I D+ SYDRFR RL+ PI RG+V+AFGGRTL KYLNSPET Sbjct: 181 AAMVEAGLVIKPDDGRPSYDRFRGRLMIPIHDERGRVVAFGGRTLDPNGQPKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A K + ++VEGY+D ++L QAG+++VV++LGT Sbjct: 241 LFHKGVMLFNVHRAREPAFK----------AGQAVVVEGYLDAIALWQAGLKHVVATLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LWKL+P V+CFDGD G+ AA++AID + L G F L G+DPD Sbjct: 291 AFTEDQIIRLWKLAPEPVVCFDGDAAGVAAAHRAIDRIFPVLRSGCSFQFCFLPDGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G F + + + PL + +W+RE S +TP+ +A LE ++ I I+D+++ Sbjct: 351 DLIRARGLAGFLEEVRRAQPLSEAVWEREVSVASLDTPERKAALEKRFEDLIATIRDERV 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y IR RL LF + + A P + + Sbjct: 411 RRRYQLDIRFRLSNLFFERARRSGAAAGAAARPAALARVSAPEGPMFGT----------- 459 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + + +P +L + +A + + + + L + + + Sbjct: 460 ---ERLVCGLCVRYPDLLDRHIERIAALGFADELHARFRDELCRVATDLDATSVADFFES 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANI---------VDVRQGYQQALALYKRFRLL 591 L ER + L + + + G A + D + + +A+ L+ L Sbjct: 517 LDERFYQILSEVMAAKPESNGSPPARAGFSDLLQRFPLLRNDPPEDFVEAVFLHFLDGL- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + +E+++ Q GE + + + + + Sbjct: 576 --ELRALERELQQ-ELGGEDDVDEEAWNRIRGLSQDL 609 >gi|296140433|ref|YP_003647676.1| DNA primase [Tsukamurella paurometabola DSM 20162] gi|296028567|gb|ADG79337.1| DNA primase [Tsukamurella paurometabola DSM 20162] Length = 641 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 145/654 (22%), Positives = 267/654 (40%), Gaps = 50/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +++G+YV G CPFHDEKTPSFH ++GF Sbjct: 4 RIPERDIAAIRDRARIEDVVGEYVALRPAG----VGSMKGLCPFHDEKTPSFHVRPTQGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF C GD +SFL + F+E+V++LA G+ + P ++ + L+ Sbjct: 60 FHCFGCGEGGDVISFLQKIEHVPFVEAVEQLADKVGIQISYEGGTPGPKQDRGTRMRLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ L+ + YL +R + E + GYAP ++ + L ++GF Sbjct: 120 ANAAAQKFYAEQLRTPEAETARQYLQDRDFTAEDAEFYGCGYAPSGWDTMTKALLRQGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++ AGL G DRF RL++PI++ G VI FG R L ++ KY+N+ E Sbjct: 180 VKELEAAGLTKQGQR--GPIDRFHRRLLWPIKNLGGDVIGFGARKLFDDDNLGKYMNTTE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K + L+ A ++ K +++VEGY DV+++ AGV+ V+S Sbjct: 238 TMLYKKSQVLFGLDHAKKHIAK----------GHQVVVVEGYTDVMAMHAAGVETAVASC 287 Query: 299 GTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E + L+ +L ++ FDGD+ G AA KA D R Sbjct: 288 GTAFGEDHVSLVRRLMMDDSYFRGEVIYTFDGDEAGRAAAMKAFDGDQKIAG---RTFVA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + +G A LI + +P+ + K +T + R Sbjct: 345 VAPDGMDPCELRQKHGDEAVRDLIAQRVPMFEFAVKTLISEFDLDTAEGRVHALRRSVPV 404 Query: 412 INHIKDQKLRYYYSQAIRDR-----LQQLFQKYITEHSGYGRYWKK---------NARHR 457 + IKD LR Y++ + + Q+ ++ E + R + N R R Sbjct: 405 VARIKDMALRDEYARQLAGWVGWDDVGQVLRRVREESARIRRGEGRPGPGAPAPSNNRFR 464 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + + P + + + + + +L + PA+ + L+D + + + Sbjct: 465 EPENPVPQARPTGPQRPNPTDPVLWVQREVLKCALQAPALAGTVFDALSDDMFTDPAYRA 524 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + E + G +L+ L ++ L + Sbjct: 525 IRLAIEGAGGIAAGLGGAEWVDTVVRHADGPVLEALVTELAVEPLEVQGEPSP------R 578 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 Y +++ + + Q +++ ++ +++ + + L L + + Sbjct: 579 YVESVLARLQEVWVGGQVADLKSKLKRMSPNADDD-YNRLFGDLVALESYRQSL 631 >gi|87200248|ref|YP_497505.1| DNA primase [Novosphingobium aromaticivorans DSM 12444] gi|87135929|gb|ABD26671.1| DNA primase [Novosphingobium aromaticivorans DSM 12444] Length = 621 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 203/644 (31%), Positives = 307/644 (47%), Gaps = 29/644 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ +L I +S LIG+ V + ++ ACCPFH+EKTPSF ND KG Sbjct: 1 MTLTPQWLDELRTRISLSGLIGRSVRVQKAGR-----EFKACCPFHNEKTPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G F+E+V+ LA AG+ +P DP+ K+ + Q L + Sbjct: 56 FYHCFGCGAHGDAIRWMTDHQGLPFMEAVKELALQAGMEVPAPDPRAAKRAEQQKSLHDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ A DFF L R YL RG + + F G+APDSR +L+E L GF + Sbjct: 116 MQAAQDFFVRCLGEERGTEARRYLASRGFPAGIVRDFGFGFAPDSRTALKEALS--GFPD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPE 238 E +IEAGL I YDRFR RL+ PI RG+VIAFGGR L K ++ KYLNSP+ Sbjct: 174 EMLIEAGLRIVV-EGKEPYDRFRGRLMLPILDPRGRVIAFGGRILTAEKTDAPKYLNSPD 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ +YN A +++ R +++VEGYMDV++L AG+ V+ L Sbjct: 233 TPLFDKGRTVYNLHRAGPASRQNGR----------VVVVEGYMDVVALAAAGIGEAVAPL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE+Q+ LW+L LCFDGD G RAA +AI L L PG+ + V L +G D Sbjct: 283 GTALTEHQIERLWRLVETPTLCFDGDAAGQRAAMRAITRALPLLRPGHSLRIVTLPQGMD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++ G A E L+ + LVD+LW+ E + TP+++A L+ L I+ Sbjct: 343 PDDVVKKQGPAAMEALLDGARSLVDVLWEVERDAAPLATPEDKAGLKARLLAHCETIQHP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ Y + + +R +L R AR + Q + K K+ + Sbjct: 403 DIKSLYRRELTERFGELAFARKERAPFQPRQGGSAARGKGQPWKPAPPPLAEQDKAKMLR 462 Query: 479 KPSLREAALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + +LL L+ HP + LA +R D+ L L + Sbjct: 463 IGTGPSTSLLAAVLDGLLRHPQQIARHADSLARLRPDDPATCALIDALLVLSDGVQPLES 522 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E + L ERG +L AG+ + +A+A+ + + Sbjct: 523 EALRPILLERGL-----RLPSAQDYAGMRFGFLTGSGDSAADELAEAVAILVEWPAVEEA 577 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 E ++ + + L + + ++ Q+ A + Sbjct: 578 LAEATRRAETELSDENFAEQQRLRARSMALRARLGQMGRARAAL 621 >gi|288555753|ref|YP_003427688.1| DNA primase [Bacillus pseudofirmus OF4] gi|288546913|gb|ADC50796.1| DNA primase [Bacillus pseudofirmus OF4] Length = 602 Score = 395 bits (1015), Expect = e-107, Method: Composition-based stats. Identities = 174/630 (27%), Positives = 292/630 (46%), Gaps = 38/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I +I YV ++ Y CPFH EK+PSF + K Sbjct: 9 RIPEEKIEQIRKSTDIVEVISDYVQLKKQGRQ-----YIGLCPFHGEKSPSFSVSQDKQL 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G+ SFL G +F+++ + LA A + LPV + +I Sbjct: 64 YHCFGCGAGGNVFSFLMEHEGYTFVDAAKDLAGRANIDLPVQSQGETNRHSPTKMMIDGH 123 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A+ +HH L Y R +E F++G+AP+ SL+ L ++GFS Sbjct: 124 ELASKLYHHVLTLTEEGAGGREYAKSRKFTKEQLEHFQIGFAPNRWDSLKIILDKRGFSL 183 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + +AGLL ++ YDRFRNRL+FPI ++G+VIAFGGR++ + KYLNS ET Sbjct: 184 EMMAKAGLLGIRESDNGYYDRFRNRLMFPIWDNQGKVIAFGGRSIGSDKP-KYLNSAETP 242 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHK LY A Y++K + IL EGY+DV++ AG+ N V++LGT Sbjct: 243 IFHKSNTLYALHLARPYIRK----------ENAAILFEGYVDVVAAWGAGITNGVATLGT 292 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT+ Q ++L + + + +C+D D G+ AA+++ + G V L+ G DPD Sbjct: 293 SLTQEQAKVLRRNAENVTICYDSDRAGVDAAFRSATI---LEEAGCHVKIALMPEGLDPD 349 Query: 361 SFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 FIR +G F+ +I SL L+ + + R+ ER + I+ +K Sbjct: 350 DFIREFGAERFKTDVIGASLSLMAFKMRFLRKGRNLQDEGERLRYIEEVLREISSLKRAV 409 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y + + D + E R KK + + P +R +L + KL Sbjct: 410 ERDHYLRQLADEFSLSLEALKQEQFQLYRA-KKQQQAGKSEQPIKRHATKALNQKKLLPA 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E LL ++ I ++ + + ++ +E + ++LF+ + E P + Sbjct: 469 YKNAERLLLAHMMRDIEIAEQVQERIGG-AFNVDEHHAIAAYLFAYYGEGNEADPSQFVN 527 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 RL + L R + + S E + ++ +Q + Y ++ + +QKE + Sbjct: 528 RLEDPD-------LMRVASELAMLSVNEECSEQELIDYMKQ-IENYPKWVDI-QQKEILM 578 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KQ + + A L + ++ Q+H Sbjct: 579 KQ------EHDPVAAAKLKMEIIQMKKQLH 602 >gi|91227145|ref|ZP_01261629.1| DNA primase [Vibrio alginolyticus 12G01] gi|269968566|ref|ZP_06182569.1| DNA primase [Vibrio alginolyticus 40B] gi|91188797|gb|EAS75084.1| DNA primase [Vibrio alginolyticus 12G01] gi|269826824|gb|EEZ81155.1| DNA primase [Vibrio alginolyticus 40B] Length = 588 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 288/633 (45%), Gaps = 58/633 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + FL F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFLMEFDRLEFVEAIEELASYLGLDVPREQRSGGNGSFQSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KY Sbjct: 180 GQNKENQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDS+IR GK AFE+ + ++PL + ++ T+ +T + A+L I+ Sbjct: 348 PDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSSLTQQVDMSTKEGMAKLSTLAVPLID 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR Y + + RL + ++ + + K + + + Sbjct: 408 KVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPM-------- 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ LI +P + + L L+ + + Sbjct: 460 -----------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDVLDKCQAHPHIN 507 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + LL +L E + + + Q + + Sbjct: 508 TGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV---------EK 557 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 Q E ++ + V AE+ L++++ ++ Sbjct: 558 QIENLQAKARSVGLS--AEEKRELLALMLDLKA 588 >gi|294678571|ref|YP_003579186.1| DNA primase [Rhodobacter capsulatus SB 1003] gi|294477391|gb|ADE86779.1| DNA primase [Rhodobacter capsulatus SB 1003] Length = 654 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 205/605 (33%), Positives = 310/605 (51%), Gaps = 28/605 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L +P+S ++G+ V WD RK+N KGD+WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRNRLPLSQVVGRKVIWDPRKSNRAKGDFWAPCPFHTEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ F+E+V+ LA AG+ +P DP+ +K +T+L+R+ Sbjct: 61 FYYCFGCHAKGDAVSFVKETENVGFVEAVEILAREAGMVMPARDPQAAQKADRRTELVRV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L YL R + + A+E F++G+APDSR L + L KG + Sbjct: 121 MEEAVKYFRLQLNTQAGAAARDYLARRRLGASALERFEIGFAPDSRNGLFQALTGKGIAP 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I++AGL I D T YDRFR R+IFPIR +RG+ I+ GGR + KYLN PET Sbjct: 181 DLIVDAGLCIRPDEGGTPYDRFRGRIIFPIRDARGRAISLGGRAMDPNARAKYLNGPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A K +I+ EGY+DV++L +AG V+ LGT Sbjct: 241 LFDKGRNLYNLGPAREACGK----------GKPLIVAEGYVDVIALVEAGFTGAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL+L+W+++ V+ DGD GLRA + +DL L L G + F +L G+DPD Sbjct: 291 AITEDQLKLMWRIADEPVIALDGDAAGLRAGLRLVDLALPLLEAGKALRFAILPGGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ G+ A E+++ + P+VD+LW+RETE + F++P+ +A L+ L+ + I D + Sbjct: 351 DLIKAEGREAMERVLASAKPMVDLLWQRETEGKVFDSPERKAALDKSLRAALKKIADPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGY------------GRYWKKNARHRDQKGPSQRLMQ 468 R +Y + I+ ++LF + + Q P Sbjct: 411 RTHYGEDIKRLREELFGLSRGGQAPRWTMPQGAFSPGPRGPGAGGRGAKPQALPLSATRA 470 Query: 469 SSLVKGKLSK-KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S L LRE ++ L HP ++ E ++ +R + L L + Sbjct: 471 SLLASAGSEAVAEQLRETMIVAILCAHPVLVAEFESQIERLRLSDPGLGALRDTML---- 526 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 Q + + L G +L+ L R + R + LA + Sbjct: 527 MQADRPAGALAEALARENPG-VLETLMRHPHVRSAPPVLRRDDSDFARMCLAEELAKLQA 585 Query: 588 FRLLS 592 R + Sbjct: 586 TRAVR 590 >gi|329848684|ref|ZP_08263712.1| DNA primase [Asticcacaulis biprosthecum C19] gi|328843747|gb|EGF93316.1| DNA primase [Asticcacaulis biprosthecum C19] Length = 620 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 195/633 (30%), Positives = 304/633 (48%), Gaps = 24/633 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L +P S +IG+ V R ++ PF EKTPSF+ ND K Sbjct: 1 MRFDDHFLDELKTRLPASEVIGKSVKLRRNGR-----EWVGLSPFSKEKTPSFYVNDQKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++ FS GD ++FL SF E+V++LAA AG+ LP V P+ E+ + L Sbjct: 56 FFHDFSSGKSGDIITFLQETERLSFNEAVEKLAAEAGMALPAVTPETRAFEQKRQSLNDW 115 Query: 121 IEVATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +++A +F L +N + YL +RG+ I+ + LGY+P R +L++ L QKG Sbjct: 116 MDLAQKWFMARLQDRNPGAQAARDYLTKRGLSPEDIQTYGLGYSPKERTALKDALVQKGA 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++E GLLI+ + YDRFR+RLIFPI+ R V++FGGR L+ E KYLN P+ Sbjct: 176 KVSELVECGLLIEVEGGGAPYDRFRDRLIFPIQDQREHVVSFGGRALNPDEKAKYLNGPD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHKG+ L+ AL L + +++VEGYMDV++ +A V V+ L Sbjct: 236 TTLFHKGQMLFGLPKALKILG-------AEQHHADLVVVEGYMDVIACQRAKVA-AVAPL 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q+ +LW+ P LCFDGD G RAAY+A+D L L PG L+ G+D Sbjct: 288 GTALTEEQIDILWRRHPEPTLCFDGDKAGQRAAYRALDRALPKLKPGKSFKVCLIVGGKD 347 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R G A + + ++ P V +L++RE E +TP+ +A + L+ I+D+ Sbjct: 348 PDDVLREKGALALREALKDTKPFVHVLFQREAELEPLDTPERKAGFKKRLRALAAQIEDK 407 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA--RHRDQKGPSQRLMQSSLVKGKL 476 L Y + R ++F K R R + + L +S KL Sbjct: 408 DLADSYRHDLLARYDEMFAAKPQPQGQGSFQPYKKGEFRKRGEVYLAPALQESRTAAVKL 467 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 S+ A L L++HP + +Q + L + + L L L + E Sbjct: 468 SRALDSISACLAQGLLDHPDWMSDQVEGLEAFGFGDETLDPLARTLVAISFRGDPLDSEG 527 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + L +G G LL ++ + +G + + ++ D + QA R L R Sbjct: 528 LSRHLHSQGLGALLSEIQKAALKSGAPFLSPDISLADAHARWIQAFNAMSRLTALER--- 584 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + E + L + + Sbjct: 585 ----ALNSSRDRVGTEFFSRLKLERDALRRTLR 613 >gi|149191851|ref|ZP_01870087.1| DNA primase [Vibrio shilonii AK1] gi|148834327|gb|EDL51328.1| DNA primase [Vibrio shilonii AK1] Length = 588 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 296/633 (46%), Gaps = 58/633 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKQGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113 +CF C V G+ + FL F+E+++ LAA G+ +P + Sbjct: 60 HCFGCGVHGNAIDFLMEYERLEFVEAIEELAASLGLDVPREQRNGSSGNFSKGPTANSEQ 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ ++ LK + +K YL RG+ ++ F +GY PD S+R++ Sbjct: 120 KRSLYDLMGTIGQYYRDQLKVSSNKAAIEYLKGRGLSGEIVQKFGIGYVPDEWDSVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L ++ KY Sbjct: 180 GQQKATQDMLVSGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GNDTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ +++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QVLVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGRDAAWRAMENALPYLNDGRQLKFMFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSFIR GK AFE + ++PL D ++ + T + A+L I+ Sbjct: 348 PDGEDPDSFIRQNGKEAFETEVQNAMPLSDFMFSSLMQQVDSRTKEGMAKLSTLAVPLID 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR Y + + +L + ++ + + + + + P + + ++ + Sbjct: 408 KVPGGTLRLYLRELLGRKLGLVDERQLQQLID------RQGQQETRAQPHKEIKRTPM-- 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ L+ +P+ + L L+ + + Sbjct: 460 -----------REVIALLLQNPSYAEMVPDLSTVRDLSLPGLN-LFVEVVDKCQAHPHMT 507 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ ++ LL +L V + I + + Q + + Sbjct: 508 TGQLLEQWRGSNNEALLSRLASWVIPLDD-DNQEDVFIDSLDKILSQCI---------EK 557 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 Q E ++ + + + E+ L++++ ++ Sbjct: 558 QIENLQAK--ERSVGLSVEEKRELLALMLDLKA 588 >gi|262392397|ref|YP_003284251.1| DNA primase [Vibrio sp. Ex25] gi|262335991|gb|ACY49786.1| DNA primase [Vibrio sp. Ex25] Length = 588 Score = 395 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 288/633 (45%), Gaps = 58/633 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + FL F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFLMEFDRLEFVEAIEELASYLGLDVPREQRSGGNGSFQSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KY Sbjct: 180 GQNKENQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 SVASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLTDGRQLKFMFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDS+IR GK AFE+ + ++PL + ++ T+ +T + A+L I+ Sbjct: 348 PDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSLLTQQVDMSTKEGMAKLSTLAVPLID 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR Y + + RL + ++ + + K + + + Sbjct: 408 KVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKRTPM-------- 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ LI +P + + L L+ + + Sbjct: 460 -----------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDVLDKCQAHPHIN 507 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + LL +L E + + + Q + + Sbjct: 508 TGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV---------EK 557 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 Q E ++ + V AE+ L++++ ++ Sbjct: 558 QIENLQAKARSVGLS--AEEKRELLALMLDLKA 588 >gi|254502588|ref|ZP_05114739.1| DNA primase catalytic core, N-terminal domain family [Labrenzia alexandrii DFL-11] gi|222438659|gb|EEE45338.1| DNA primase catalytic core, N-terminal domain family [Labrenzia alexandrii DFL-11] Length = 661 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 202/592 (34%), Positives = 298/592 (50%), Gaps = 33/592 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + ++ +P+S ++ + V WDRRKT KGDYWACCPFH EK+PSFH +D + Sbjct: 13 MRFEPRLLDEIRARLPLSEIVARRVTWDRRKTQPGKGDYWACCPFHQEKSPSFHVDDRRN 72 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GDH F++ G SF E+V+RLA AGV LP DP+ ++E+ + L + Sbjct: 73 RYKCFGCGASGDHFKFITETEGLSFPEAVERLADQAGVALPAPDPQAARREQKRASLADI 132 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A FF R + Y+ +RG+ + F+ G+APDSR +L+ HL+ +G E Sbjct: 133 CEMAAQFFEAQFAGPRGEGARAYVQKRGLTPETLREFRFGFAPDSRDALKSHLKGRGVEE 192 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLLI D++ SYDRFR RL+ PI+ RG+V+AFGGRT+ KYLNSPET Sbjct: 193 PAMIEAGLLIKPDDARPSYDRFRGRLMIPIQDDRGRVVAFGGRTMLPDGQPKYLNSPETP 252 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG L+N A KS ++VEGYMD ++L QAG+ +VV+SLGT Sbjct: 253 LFHKGAMLFNAHRAREPAFKS----------GQALVVEGYMDAIALYQAGILHVVASLGT 302 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LW+ +P ++CFDGD G+ AA++AID + L G F L G DPD Sbjct: 303 AFTEDQILRLWRFAPEPMVCFDGDAAGISAAHRAIDRIFPVLKSGYSFQFNFLPDGMDPD 362 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G F +S L D++W RE +TP+ +A LE + I I+D ++ Sbjct: 363 DLVKQRGVEGFWAEAEKSRNLFDVVWDREISVARLDTPERKAALEKRFDDLIGTIRDDRV 422 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y ++ +L LF + G+ + +R+ S Sbjct: 423 KRRYQLDLKFKLSNLFFELSRNDRKGGKKPGADPSANVIGLARERVAVSDDFGI------ 476 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L + P +L ++ ++ + N + L I Sbjct: 477 ---ERLVLGLCMRFPDLLDRNFERVSGLPLVNELHIGVRDALCR------------IVDD 521 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 L +L+ D +RD + + +Q + AL RF LL Sbjct: 522 LETAAISDLIASFDDPLRDVMHEMVLETIGLQEQKQA--EFYALNHRFPLLK 571 >gi|295399208|ref|ZP_06809190.1| DNA primase [Geobacillus thermoglucosidasius C56-YS93] gi|294978674|gb|EFG54270.1| DNA primase [Geobacillus thermoglucosidasius C56-YS93] Length = 598 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 165/633 (26%), Positives = 288/633 (45%), Gaps = 46/633 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++I YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIETIRRTVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117 ++CF C G+ SFL + G SF+E+V+RLA A + L + K + + Sbjct: 59 FHCFGCGAGGNVFSFLMDIEGISFLEAVKRLAVKANIDLSHLQLDDADKSRTNTGETKMM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + E+ F+HH L + YL RG I+ F++GYAP+S + L + Sbjct: 119 VEAHELLKKFYHHLLVNTNEGQEALDYLQARGWTREIIDQFEIGYAPNSWDFAVKLLSGR 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 GFS E + +AGL+I +N +DRFR+R++FPI + G + F GR L +G+ KYLNS Sbjct: 179 GFSLELMEKAGLIIRKENGD-YFDRFRHRIMFPILNHHGDTVGFSGRLLGEGQP-KYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LYNF A +++K +IL+EG+ DV+S QAGV + V+ Sbjct: 237 PETAIFHKGKILYNFHQARLHIRK----------HQEVILLEGFADVISAVQAGVAHSVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GTALTE R+L + +++C+DGD G+ A ++A ++ G V + G Sbjct: 287 TMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEV---LTEAGCHVKIATIPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +IR YG F + I+++ L+ + ++ +++ + I+ + Sbjct: 344 LDPDEYIRKYGPDRFRRDIIDAGSSLMAFKMMYFRKGKNLQDENDKIRYIEEVLREISKL 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + YY + + D + + Y K ++ P L++ K Sbjct: 404 PNPIEWDYYLRQLADEFSLSLSALQEQLNRYKGTVKHAHHIDREETP------KPLLQKK 457 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L E LL ++ + +++A ++ E + + +++++ + E Sbjct: 458 LLPAFQNAERMLLAHMLQSRDVAMVVQEKIAG-NFNLEEHRAIAAYIYAFYEEGNDPDVS 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + RL + L V + L E + ++ + L K Sbjct: 517 LLLSRLPD--------DLKPLVTELSLLLINDEVSNQELNDYMKHVLNYPKWL-----ML 563 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +E E++ + K + A + + E+ + Sbjct: 564 KEKEQEKMEAERKKDFLTAARIAKEIIEMKKML 596 >gi|312110190|ref|YP_003988506.1| DNA primase [Geobacillus sp. Y4.1MC1] gi|311215291|gb|ADP73895.1| DNA primase [Geobacillus sp. Y4.1MC1] Length = 598 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 165/633 (26%), Positives = 288/633 (45%), Gaps = 46/633 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++I YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIETIRRTVDIVDVISDYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117 ++CF C G+ SFL + G SF+E+V+RLA A + L + K + + Sbjct: 59 FHCFGCGAGGNVFSFLMDIEGISFLEAVKRLAVKANIDLSHLQLDDADKSRTNTGETKMM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + E+ F+HH L + YL RG I+ F++GYAP+S + L + Sbjct: 119 VEAHELLKKFYHHLLVNTNEGQEALDYLQARGWTREIIDQFEIGYAPNSWDFAVKLLSGR 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 GFS E + +AGL+I +N +DRFR+R++FPI + G + F GR L +G+ KYLNS Sbjct: 179 GFSLELMEKAGLIIRKENGD-YFDRFRHRIMFPILNHHGDTVGFSGRLLGEGQP-KYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LYNF A +++K +IL+EG+ DV+S QAGV + V+ Sbjct: 237 PETAIFHKGKILYNFHQARLHIRK----------HQEVILLEGFADVISAVQAGVAHSVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GTALTE R+L + +++C+DGD G+ A ++A ++ G V + G Sbjct: 287 TMGTALTEEHARILRRNVDTVIICYDGDASGIEATFRAAEV---LTEAGCHVKIATIPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +IR YG F + I+++ L+ + ++ +++ + I+ + Sbjct: 344 LDPDEYIRKYGPDRFRRDIIDAGSSLMAFKMMYFRKGKNLQDENDKIRYIEEVLREISKL 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + YY + + D + + Y K ++ P L++ K Sbjct: 404 PNPIEWDYYLRQLADEFSLSLSALQEQLNRYKGTVKHAHHIDREETP------KPLLQKK 457 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L E LL ++ + +++A ++ E + + +++++ + E Sbjct: 458 LLPAFQNAERMLLAHMLQSRDVAMVVQEKIAG-NFNLEEHRAIAAYIYAFYEEGNDPDVS 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + RL + L V + L E + ++ + L K Sbjct: 517 LLLSRLPD--------DLKPLVTELSLLLINDEVSNQELNDYMRHVLNYPKWL-----ML 563 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +E E++ + K + A + + E+ + Sbjct: 564 KEKEQEKMEAERKKDFLTAARIAKEIIEMKKML 596 >gi|114570680|ref|YP_757360.1| DNA primase [Maricaulis maris MCS10] gi|114341142|gb|ABI66422.1| DNA primase [Maricaulis maris MCS10] Length = 613 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 180/621 (28%), Positives = 304/621 (48%), Gaps = 18/621 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M DFI ++ + S+LIG+ V R+ ++ PF E++PSF ND K Sbjct: 1 MRLNEDFIDEIKARVRPSDLIGRSVPLKRQGR-----EFVGLSPFKKERSPSFFVNDEKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ GD ++L + G SF+E+ +RLA AG+ LP DP+ ++K + + L+ Sbjct: 56 FYHCFASGKHGDIFTWLEEMEGLSFMEAAERLAGEAGLRLPEPDPESQQKTQHRKSLVEW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A FF +L++ + + YL RG+ + +GYAPDSR +L++ L G Sbjct: 116 MGSAQAFFLRALRSPQAEEARLYLKSRGLTGEDCVRYGIGYAPDSRTALKDELVTAGAPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IE GLLI+ D+ + YDRFR+R+ FPI R +++ FGGR LSK KYLNSPET Sbjct: 176 SDLIECGLLIEPDSG-SPYDRFRDRITFPIHDPRNRLVGFGGRALSKEARAKYLNSPETP 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG LY + A + +I+ EGY+DV++L +AG+++ V+ LGT Sbjct: 235 IFHKGSVLYRYPEARKAASDP------KQDIRGLIVAEGYLDVIALSRAGLEHGVAPLGT 288 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE Q++LLW+ V+C DGD G AA+KA D L L PG + F + G+DPD Sbjct: 289 AITEEQIQLLWRAGGEPVMCLDGDSAGRAAAFKAADRALPLLQPGKTLRFAFMPDGKDPD 348 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + E+ L D++W+RE + PD RA ++ ++ I D + Sbjct: 349 DILREEGANALRAVFRETRSLADLIWEREVLVEPLDDPDRRAGFRRRIRALVSQITDGDI 408 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + R+ LF G+ ++ + + + + + Sbjct: 409 REEYKREFDQRMDALFGA----RPQSGQRGQRGPWKPGKGVALGATAELRNKQSRQADPT 464 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL+ + +P I Q + LA +R + L +L + ++ + + Sbjct: 465 ARLGHLLLVAAMEYPEIAASQVETLALLRLGS--LDRLRDAVLDACSSGQFVQTDTLRAE 522 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + G+ +K+LD + R EA+ + + + Y +++E Sbjct: 523 LADAGYAAEIKRLDGERRPMRAELGGMEASPEVRAKAWMRLAHAYMERSEAQTRRDEARA 582 Query: 601 QIAQVTAKGEAEKTAILISIL 621 ++ + + ++E+ ++ Sbjct: 583 RLDEELKQADSERFRQVVDAY 603 >gi|89100478|ref|ZP_01173340.1| DNA primase [Bacillus sp. NRRL B-14911] gi|89084821|gb|EAR63960.1| DNA primase [Bacillus sp. NRRL B-14911] Length = 603 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 146/631 (23%), Positives = 279/631 (44%), Gaps = 35/631 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++ I+++IG +V ++ N Y+ CPFH E +PSF + K Sbjct: 4 RISEAKLDEIRQATDIADVIGDHVQLKKQGRN-----YFGLCPFHGENSPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 Y+CF C G+ SFL G SF E+ +LA AG+ L + ++ + +I Sbjct: 59 YHCFGCGAGGNVFSFLMEHEGYSFQEAAVKLAERAGIQLDIEAASAKQSSLPENLQQMIE 118 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+ F+HH L N + YL +RG +IE F++GY+ DS + + L ++ F Sbjct: 119 AHELLRKFYHHLLMNTKDGQHALEYLLDRGFTKESIEKFQIGYSLDSWDFVCKFLVKRKF 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + E + AGL+I D + +DRFR+R++FPI +G IAF GR+L G KYLNSPE Sbjct: 179 NPEFMERAGLIIKRDRDGSYFDRFRDRIMFPIFDRKGNTIAFSGRSLGAGNEPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K LYNF A ++K + +L EG+ DV++ ++ V+N V+++ Sbjct: 239 TAIFNKSKILYNFHLARPAIRK----------THQAVLFEGFADVIAADRSSVENGVATM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT + +L + + + +C+D D+ G+ AA+KA + G + +L G D Sbjct: 289 GTALTPEHVAMLRRNTESVTICYDSDNAGIEAAFKAAKM---LSEAGCGIKVAMLPDGMD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +I+ +G F +I S+ + + + +R + I+ + Sbjct: 346 PDDYIKQHGAEKFRNDVIESSITHMAFKFLYYRRGKKLQDEGDRLLYIEEVLKEISLLDK 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R +Y + + + + E K+ + + ++ S + L Sbjct: 406 AVERDHYMRQLANEFSLSLEALKQEQKQIYFAEKRKNQGSSAPAQKKHMIVSR-RQDSLK 464 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + L ++ ++ Q + ++LF+ + + P Sbjct: 465 PAFHTAERRLIAHMLRNSDTAYKVQELLGGSTFNIDDHQAIITYLFAFYEKGNSPDPSAF 524 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + ++ ++ + S E ++ +Q L K +E Sbjct: 525 LNFVEDAKLKRIIADIE-------MMSVNDELTEQELNDYIKQVLNYQKML-----MIKE 572 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + + + + A + + ++ + Sbjct: 573 KQAEGKEAERQNDFARAASIAMEIIQLRKLL 603 >gi|197106037|ref|YP_002131414.1| DNA primase [Phenylobacterium zucineum HLK1] gi|196479457|gb|ACG78985.1| DNA primase [Phenylobacterium zucineum HLK1] Length = 637 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 191/636 (30%), Positives = 310/636 (48%), Gaps = 24/636 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + FI+++ + S++IG+ V ++ +Y PF+ EKTPSF ND KG Sbjct: 4 RFDERFIEEIKGRLRPSDVIGKTVKLRKQGR-----EYVGLSPFNKEKTPSFFVNDEKGQ 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++ FS GD ++FL SF E+V++LAA AG+ LP DP+ + EK + L + Sbjct: 59 FFDFSSGKTGDIITFLQETERLSFAEAVEKLAAEAGLALPAADPRGAEVEKKRQGLADWL 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E+A +F LK + YL++RG+ F+LG++P R +L+++L KG Sbjct: 119 ELAAQWFEAELKRPVGRDARAYLEKRGLPEKEWARFRLGFSPSGRTALKDYLVTKGARPA 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++EAGLLI ++ YDRFR+R+IFPI +RG+V++FGGR + KYLN PET++ Sbjct: 179 ELVEAGLLIAPEDGGAPYDRFRDRIIFPILDARGRVVSFGGRAMDPNARAKYLNGPETVV 238 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG NLY A L +++VEGYMDV++ +AG+ V+ +GTA Sbjct: 239 FHKGNNLYGLSEARKIL-----AAAPTGDEPPLVVVEGYMDVIACQRAGIP-SVAPMGTA 292 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE Q+ +LW+ P LCFDGD G +AA +AID L L PG F L+ G+DPD Sbjct: 293 LTEEQMEVLWRHHPEPTLCFDGDRAGRQAAGRAIDRALPLLKPGKSFKFALVEGGKDPDD 352 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G A + + ++ P + L+ RE + +TP+ R L++ L+ I D L Sbjct: 353 VLREQGPAALKSQLEKTTPFAEALFVRERDLEPLDTPERRTALKVRLRKLAATIADPDLA 412 Query: 422 YYYSQAIRDRLQQLFQKYITEHS-GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + R +QL+ ++ G R + + ++ L P Sbjct: 413 QAYKEDLLGRFEQLWPTQQPVYTVGAAGRELSRHRWAKKGALAGASPETKQAAQDLKASP 472 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 AAL + ++ P+++ + + + + L + L E + + +R Sbjct: 473 RPLAAALAVAALHDPSLIDNSIELVGARGFGDERLDAIAQALVQIRYETDEAEFDGVVRR 532 Query: 541 LCERGFG-ELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L RG EL+ +L+R R AG+ + + A VR + QA L + L R Sbjct: 533 LRSRGVSQELIAKLERDARRAGVSAPFLDATAARDRVRALWSQAFELLMKLEALERAVAS 592 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +A+ + + L + + + Sbjct: 593 AVGDMARDPSAA---------AALINLKAERDHLRK 619 >gi|257055422|ref|YP_003133254.1| DNA primase [Saccharomonospora viridis DSM 43017] gi|256585294|gb|ACU96427.1| DNA primase [Saccharomonospora viridis DSM 43017] Length = 657 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 135/653 (20%), Positives = 241/653 (36%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I ++G+YV R G CPFH+EKTPSF+ + G Sbjct: 24 RIRESDIAQVRERNRIDEIVGEYVALRRAG----GGALKGLCPFHEEKTPSFNVRPTHGT 79 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD + F+ + F+E+V+RLA G+ L + + L+ Sbjct: 80 FHCFGCGEGGDVIKFVMQIEHLGFVEAVERLADRIGLQLTYEGGGSSVRRDRGTRLRLVE 139 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L + +L ERG D F GYAP L +HL + GF Sbjct: 140 AHKAAQAFYAEQLTTPEAEAARAFLTERGFDQSTWTKFGCGYAPAGWDRLTKHLLRSGFE 199 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237 ++ A L + DRF RL++PI+ G V+ FG R L + ++ YLN+ Sbjct: 200 LSELYRAQLSKE--GRRGPIDRFHRRLVWPIKDRGGDVVGFGARRLFDDDPIQAKYLNTS 257 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++ K + L+ A + + +++VEGY DV+++ AGV V++ Sbjct: 258 ESPIYKKSQVLFGLDQAKREIAR----------RHQVVVVEGYTDVMAMHAAGVPTAVAT 307 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E +R+L +L ++ FDGD+ G +AA KA + + Sbjct: 308 SGTAFGEDHMRVLRQLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 364 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ +PL + K + ++ D + Sbjct: 365 AIAPDGMDPCELRLAKGDAAVRDLVARRIPLFEFAIKSLLASYDLDSVDGQVAALQRTVP 424 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR---------DQKG 461 + IKD+ R Y+ + + + + + G Sbjct: 425 LVAQIKDRAKRDGYATKLAWWVGWQDEAMVVRRVRETADGAPARTNGTRRSSARAGRAGG 484 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L + + +L + PA+ +Y L + + + + Sbjct: 485 ARGNGTGGQLERPDPRNPDLRAQREVLKAALQEPALAGPEYDALPEDAFTHPAYVGVHRA 544 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + L ++ L D Y + Sbjct: 545 LLAAGGTGSGLSGSALIEAASAHASDRTVVSLLSELAVEPLQ------AKDDADVRYVSS 598 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + L+ RQ E++ ++ +++ AE+ L L + + Q Sbjct: 599 VLAAVQENLVGRQIGELKSRLQRLSPVDAAEEYRALFGDLVALEQYRKALREQ 651 >gi|72161270|ref|YP_288927.1| DNA primase [Thermobifida fusca YX] gi|71915002|gb|AAZ54904.1| DNA primase [Thermobifida fusca YX] Length = 656 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 158/651 (24%), Positives = 273/651 (41%), Gaps = 47/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + PI++++G+Y+ NA G CPFHDEKTPSF+ ++ Sbjct: 40 RIKDEDVALVRERSPIADVVGEYLQL----RNAGGGSLKGLCPFHDEKTPSFNVTPARNL 95 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 +YCF C GD +SF+ + SF+E+V+ LA AG+ L + + + L+ Sbjct: 96 WYCFGCGEGGDVISFIQKIEHLSFVEAVEHLARAAGIQLRYEQGGYVPRNEQGQRQRLVD 155 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA +F+ L + + +L ERG E F +GYAP S +L HLR KGF+ Sbjct: 156 AHRVAAEFYAEQLLSPEAQAGRRFLVERGFTRADAEHFGVGYAPASWNALLSHLRAKGFT 215 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++I+ AGL YDRFR RL++P+R G V+ FG R L ++ KYLN+PE Sbjct: 216 DQEIVLAGLASQ--GRRGPYDRFRGRLVWPVRDLSGDVVGFGARKLDPEDTGPKYLNTPE 273 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K LY A + + ++VEGY DV++ AGV V++ Sbjct: 274 TPLFKKSSLLYGLDLAKKEIARQ----------RQAVIVEGYTDVMACHLAGVTTAVATC 323 Query: 299 GTALTEYQLRLL-------WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GT+ E L++L ++ ++ FDGD G AA +A Sbjct: 324 GTSFGEEHLKILRRLLLGRFEFGGEVIFTFDGDQAGRNAALRAFAEEHGFAS---ETFVA 380 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A LI PL + + + + E + +TP+ R Sbjct: 381 VQPDGLDPCDLRVQRGDAAVRDLIAAKQPLYEFMIRSKFEGYNLDTPEGRLAALDAAAPI 440 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I++ +R Y ++ L + ++++ R + R R ++ P + + Sbjct: 441 VASIRNAGVRRLYGVSLDRWLGIMDEEFVHR-----RIQEHMRRARGRRVPPKPATAAPA 495 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + L RE L + HP +L + L + + + ++ + Q Sbjct: 496 PRYDLRDPVVQRERLALKLAVQHP-LLCSGFDHLDADMFTVEQHRDVFHLIQKAGGTQSV 554 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P +L E + + Q + ++ + Q + R + Sbjct: 555 QDPALWAGQLRET------ARNEAQRTFLTQLAVEPIEIYGELDEYRAQEIISTIRIHSI 608 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 +RQ ++ +++++ +AE+ + + L Q + E FG Sbjct: 609 NRQITNLKSRLSRLDPVADAEEYQRIFTELMTAEQQKRMMR------ERFG 653 >gi|92118366|ref|YP_578095.1| DNA primase [Nitrobacter hamburgensis X14] gi|91801260|gb|ABE63635.1| DNA primase [Nitrobacter hamburgensis X14] Length = 633 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 199/638 (31%), Positives = 320/638 (50%), Gaps = 35/638 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P FI ++ +P+S ++ + V R ++ PF EKTPSF ND K Sbjct: 1 MRFPPSFIDEVKARLPVSEVVSRRVKLKRAGR-----EFKGLSPFQQEKTPSFTVNDQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+ FS G+ F+ G SF E+V+RLAA+AG+PLP + E++E+ Q L + Sbjct: 56 FYHDFSTGKHGNIFDFVMETEGVSFPEAVERLAAMAGLPLPRNSREDEQREQRQKSLFEV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT +F +L + + YL +R I +I F++GYA R++L+E+L KG Sbjct: 116 MELATTYFEQNLASRGGAQARGYLSDRAIAPSSIVEFRIGYATADRFALKEYLGSKGVPV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +IEAGLLI GD+ YDRFR+R++ PI RG+V+ FGGR L + KYLNSPET Sbjct: 176 EDMIEAGLLIAGDDIPVPYDRFRDRVMIPIHDQRGRVVGFGGRALRQDVQPKYLNSPETS 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG ++NF A ++ ++ VEGYMD +++ QAG++ VV+++GT Sbjct: 236 IFHKGSIVFNFHRARQPAH----------EANSVVAVEGYMDAIAVYQAGIKAVVATMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TE Q+ LW+LSP V+CFD D G+ AAY++ID +L L G FV + +DPD Sbjct: 286 AFTEEQIATLWRLSPEPVVCFDSDRAGIAAAYRSIDRILPLLRVGKTFRFVFMDEQKDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G AF ++ SLPL D+LW+RET+ + TPD +A LE L + I+D + Sbjct: 346 DLIREKGVEAFRSVLSGSLPLWDVLWQRETDGQDVRTPDRQAALEQKLYALVRTIQDPAV 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + R +L LF + R +K + +K + Sbjct: 406 NTAFFRTSRMQLANLF--------------WQVNRGPTRKNKEAGSKFNPQLKLDGEGQR 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S + +L L+ +P +L+++ + +++ +L + LF V +I + Sbjct: 452 SGLQKVVLGMLVEYPELLEDKRDSVLRLQFP-EKLDVFLTSLFQLLVTDAKLSVSDIWTK 510 Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + L + D + L+ + L + + + Sbjct: 511 LKPAFYDTLQTVHGEAGDGKRLGHRLFERFPILSRDPPSDFVSGCLDHFIKILHRHELDD 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +I++ +G+ A L+S++ E H + I ++ Sbjct: 571 DIQRARLDA-GQGDESAVARLLSLVREGHAEQEGISAE 607 >gi|212638698|ref|YP_002315218.1| DNA primase [Anoxybacillus flavithermus WK1] gi|212560178|gb|ACJ33233.1| DNA primase (bacterial type) [Anoxybacillus flavithermus WK1] Length = 604 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 158/631 (25%), Positives = 290/631 (45%), Gaps = 41/631 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I ++I QYV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETVEHIRRSVDIVDVIQQYVSLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 Y+CF C G+ SFL + G SFI++V+RLA A V L VD + + +I Sbjct: 59 YHCFGCGAGGNVFSFLMEIEGISFIDAVKRLAPKANVDLSHIVDDHLPTERTEVATMIAA 118 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ F+HH L + YL +RG IE F++GYA + + L KGFS Sbjct: 119 HELLKKFYHHLLMHTNEGEEALNYLLQRGFTREIIEQFEIGYALPTWNAAVTFLTNKGFS 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + AGL++ + +DRFR+R++FPI + G+ +AF GR + E KYLNSPET Sbjct: 179 LPLMERAGLIVRKSEEDSYFDRFRHRIMFPIHNHHGETVAFSGRAI-GNEEPKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K LY+F A +++ ++L EG+ DV++ QAG+ + V+++G Sbjct: 238 PIFNKRNILYHFHEARLPMRQK----------QQVVLFEGFADVIAAVQAGISHAVATMG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TAL+E Q R+L + + +++C+DGD G+ AA +A + + G V ++ G DP Sbjct: 288 TALSEEQARMLRRNASSVIVCYDGDRAGIDAALRASE---TLMEAGCYVKVAMIPDGLDP 344 Query: 360 DSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D ++R YG F ++++ L L + R ER I+ + Sbjct: 345 DEYVRKYGADRFRHHVLDASLSLTAFKLEYLKRGRHLQNESERLRYIEEAVKEISRLSSA 404 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 YY + + D + + +G+ + ++ +R K KL Sbjct: 405 IEADYYLRQLADEFSLSLDALREQMTIHGKKQQ------IERKQERRETVILSAKAKLLP 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ ++ +I + + ++ E + + +++++ + E + Sbjct: 459 AFQKAERMLIAHMLRDKSIAFTVQEAIEG-AFNIEEHRAIAAYVYAFYEEGHEPDVSSLL 517 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +R+ + ++ +L + + + +++ Y Q + Y + +LL ++ Sbjct: 518 ERIHDSQLKRIVTEL-------SMMPINEDISSAELQD-YIQCVLNYPKEQLLKQK---- 565 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E Q+ + + + E+ + S + + +H Sbjct: 566 EAQLREAERQKDYERAKRIASEMIAMRKSLH 596 >gi|149183341|ref|ZP_01861779.1| DNA primase [Bacillus sp. SG-1] gi|148848938|gb|EDL63150.1| DNA primase [Bacillus sp. SG-1] Length = 601 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 164/630 (26%), Positives = 291/630 (46%), Gaps = 35/630 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I ++ I I ++I YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPEEKINEIRQSIDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C G+ +FL + G SF E+V +LA G L V P + + +I Sbjct: 59 FHCFGCGAGGNAYTFLMDIDGISFQEAVVKLAEKTGQELSVDVSPVETPASRDEEKMIEA 118 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ + F+HH L + YL +RG +I+ F++G++ S L ++GF+ Sbjct: 119 HELLSKFYHHLLVNTKEGQDALEYLLQRGFTRESIDKFQIGWSLPSWEFTVNFLTKRGFA 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + +AGLL+ + +DRFR R++FPI RG+ IAF GR + E KYLNSPET Sbjct: 179 PELMEQAGLLVKREGEEQYFDRFRGRIMFPIHDHRGKTIAFSGRAM-GEEQPKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 I+F+K LYNF A +++ S +L EG+ DV+S +AGV+N ++S+G Sbjct: 238 IIFNKSSVLYNFHNARPVIRR----------RSQAVLFEGFADVISADRAGVENGIASMG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT +++L +++ I++C+DGD G+ AA++A + + ++ DP Sbjct: 288 TSLTPKHMQMLKRVTDSIIICYDGDKAGMEAAFRAAKM---LSEDQFNLRVAMIPEKLDP 344 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D +I+ Y F+ +I SL + + ++ N +R + + I+ +++ Sbjct: 345 DDYIKKYSGEKFQNDVIGASLTFMAFKLIYFRQGKNLNDEGDRLQYIEEVLREISSLQNH 404 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R YY + + D Q + KK+ + +K + MQ + KL Sbjct: 405 IERDYYLRQLADEFSLSLQALQQQQKQVYFSNKKSDKREQRKQDFVQPMQPK-AENKLFP 463 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ ++ +P I + L ++ +E Q + ++LF + E Sbjct: 464 AYHTAERRLIAHMMKNPDICFKVQDLLGGNSFNLDEHQAIITYLFGYYEEGNEADSSGFI 523 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q L + +L R V + G+ S + E + ++ Q L K + +Q + Sbjct: 524 QFLPD-------NRLRRVVSEIGMMSVSEECSEQELIDYVNQVLKHQKMLTIKEKQLAQ- 575 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + K A++ + ++ + Sbjct: 576 ----KEAERQKDYNKAALIAMEIVQLRRSL 601 >gi|258542086|ref|YP_003187519.1| DNA primase [Acetobacter pasteurianus IFO 3283-01] gi|256633164|dbj|BAH99139.1| DNA primase [Acetobacter pasteurianus IFO 3283-01] gi|256636221|dbj|BAI02190.1| DNA primase [Acetobacter pasteurianus IFO 3283-03] gi|256639276|dbj|BAI05238.1| DNA primase [Acetobacter pasteurianus IFO 3283-07] gi|256642330|dbj|BAI08285.1| DNA primase [Acetobacter pasteurianus IFO 3283-22] gi|256645385|dbj|BAI11333.1| DNA primase [Acetobacter pasteurianus IFO 3283-26] gi|256648440|dbj|BAI14381.1| DNA primase [Acetobacter pasteurianus IFO 3283-32] gi|256651493|dbj|BAI17427.1| DNA primase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654484|dbj|BAI20411.1| DNA primase [Acetobacter pasteurianus IFO 3283-12] Length = 613 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 174/630 (27%), Positives = 286/630 (45%), Gaps = 32/630 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F+ +L PI++++G+ V R N + CCPFH EKTPSF+ D Sbjct: 1 MAIDSAFLDELRARTPIASVVGRRVKLARSGRN-----WKGCCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD +SF+ + G +F E+V+ LA+ AG+ +P + +++ L + Sbjct: 55 -FHCFGCGVHGDVISFVMQMEGKNFPEAVEELASSAGMEVPKDTRRTQEEVAHVRSLEDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + H+L + YL RG+ +E F LG+A + R L L KG + Sbjct: 114 LAATQEIWSHALYKPEGRAGLDYLLGRGLTRETLETFGLGWASERRGELVSALAPKGITP 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + EAGL+ ++ + F R+ FPIR +G++++FGGR L KYLN PET Sbjct: 174 EMMAEAGLMRVDEHGHPKGELFWGRVTFPIRDRKGRLVSFGGRIL-GDGQPKYLNGPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + L+ + + +++VEGYMDV++L QAG V+ LGT Sbjct: 233 VFSKRRLLFGLDR---ARAAVRAPRPKGVLAPDLVVVEGYMDVIALHQAGFTGAVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QL LW++ +LCFDGD G RAA KA + L L + LL G+DPD Sbjct: 290 ALTPEQLEALWQVDRAPILCFDGDAAGRRAAVKAAETGLPLLKQDYSLRICLLPDGDDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G+ A ++ + PL ++L+ + + P+ERA L L I D+ L Sbjct: 350 SLVRTRGRQAVAEMFAAAQPLSEVLFDLLSAGINNPGPEERAALRRRLTEVAALIPDKML 409 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + DR F R + Q S + Sbjct: 410 ASEYRSTLLDRFFTTF-----------RRGGGGKWNGPQGRKSNAPASVPGAVPVNMDQT 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQ 539 R+ +L L+ HP ++ E + L + E ++ +FL E + ++ Sbjct: 459 RERQRLMLELLLFHPVLVPEVEEALCRLDLP-EEFAEVRAFLLDLSAEGELPDNAAALYA 517 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597 L G E ++ + R+ +SA +E++ D + + LL + +E Sbjct: 518 WLQAEGAEETIRAVMRES-----YSAMSESDAEDPAHTVAARTQWWHFYGLLYGPQFIQE 572 Query: 598 IEKQIAQV-TAKGEAEKTAILISILHEVHI 626 + ++IA+ G++ + L + L + Sbjct: 573 VNREIARFVEKGGDSAEWQRLQARLEAMER 602 >gi|119386780|ref|YP_917835.1| DNA primase [Paracoccus denitrificans PD1222] gi|119377375|gb|ABL72139.1| DNA primase [Paracoccus denitrificans PD1222] Length = 646 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 218/634 (34%), Positives = 316/634 (49%), Gaps = 36/634 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ ++ +P+S +IG+ V WD R++N KGD+WA CPFH EKTPSFH +D KG Sbjct: 1 MSLPPQFLDEIRARVPLSRVIGRKVVWDLRRSNQAKGDWWAPCPFHGEKTPSFHVDDQKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L+FL G FIE+V+ LAA AG+P+P DP+ ++ +T+L+ + Sbjct: 61 FYYCFGCHAKGDALTFLREAEGLGFIEAVELLAAEAGLPMPERDPRQVQRADHRTELVDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +F L + YL RG+D A E F +G+APD R L LR KG +E Sbjct: 121 MEQAVRWFRMQLGMGVAEAARAYLARRGLDDAACERFGIGFAPDQRQGLFNALRAKGIAE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I+EAGL ++ +DRFR R+ FPIR RG+ IAFGGR + KYLNSPET Sbjct: 181 QLIVEAGLAAKPEDGGAPFDRFRGRITFPIRDGRGRCIAFGGRAMDPNARAKYLNSPETP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+NLYN A + K +++ EGYMDV++L +AG + V+ LGT Sbjct: 241 LFDKGRNLYNIGPARAAVAK----------GRPLVVAEGYMDVIALVRAGFEGAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QLRL+W++SP V+ DGD+ GLRAA + IDL L PG + F L +G+DPD Sbjct: 291 AITEDQLRLMWRISPEPVIALDGDEAGLRAAMRLIDLALPMTGPGQALRFAFLPQGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A ++ E+ PLVD+LW+RETE R F++P+ RA L+ L + I D+ Sbjct: 351 DLIRARGAGAMAAVLDEARPLVDLLWRRETEGRVFDSPERRAALDKALGEAVAKIPDKDT 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG---------YGRYWKKNARHRDQKGPSQRLMQSSL 471 R +Y +R+ +LF + GR W+ P S L Sbjct: 411 RDHYHAVLRNLKWELFGNRRRSDAPAAARPARDWKGREWQGGGARFQPVAPVAPTRASRL 470 Query: 472 --VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + +L EA +L HP ++ L + + + L Sbjct: 471 SSPGAGEHEAETLVEAMVLAICATHPGLIAPVESRLERLEPQDADRAAL----------- 519 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ + L+ + + + AL + R Sbjct: 520 ----IHDLLSGTQSQAGQRALESIMSDPHVRAAPAILRPHDGDAAADILANALDRIESRR 575 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + E +I + +G + A + Sbjct: 576 SAREEIARAEAEIEGLADEGLTWRMAQSARARQQ 609 >gi|19553466|ref|NP_601468.1| DNA primase [Corynebacterium glutamicum ATCC 13032] gi|62391109|ref|YP_226511.1| DNA primase [Corynebacterium glutamicum ATCC 13032] gi|21325039|dbj|BAB99661.1| DNA primase (bacterial type) [Corynebacterium glutamicum ATCC 13032] gi|41326448|emb|CAF20610.1| DNA PRIMASE [Corynebacterium glutamicum ATCC 13032] Length = 633 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 143/645 (22%), Positives = 257/645 (39%), Gaps = 40/645 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G YV PF DEKTPSFH ++G+ Sbjct: 7 RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CFS GD SFL + SF E+V+ A G + ++E+ + LI Sbjct: 63 YHCFSTGKGGDVFSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIL 122 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L+ + +L +RG I F+ GYAP +L +HL +KGF Sbjct: 123 ANKAAHQFYREQLETPEAQPGREFLLQRGFGQQHIYHFECGYAPAGWDTLTKHLLKKGFE 182 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 +++ AGL D+F+ RL++PI++ G VI FG R L + + KY+N+PE Sbjct: 183 FKELEAAGLSK--MGKRGPIDQFQRRLLWPIKNLSGDVIGFGARKLFDDDKMGKYMNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + + ++VEGY DV+++ AG+ V+S Sbjct: 241 TLLYKKSKVLFGLDSAKKAIA----------AGHQAVVVEGYTDVMAMHAAGIDTAVASC 290 Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L++L ++ FDGD+ G +AA +A + + Sbjct: 291 GTAFGEEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSFVS 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A L+ +P+ + + + + +T + R Sbjct: 348 VAPNGMDPCDLRLERGDAAVRDLVARRIPMFEFVIQSIISEYTLDTVEGRLAALRRAVPI 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D+ L+ Y++ + + + + + R K++ + K Q L S Sbjct: 408 VADIRDKTLQSEYARLLSGWVGWSDPSEVLRQVHEEARRPKRDKKPVRAKRFDQPLEDQS 467 Query: 471 LVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L P +E L + +P + + L + N + + + + Sbjct: 468 LRPTMALPNPRNPVLWQERESLKIALQYPELAGSYFDGLPTDSFTNPAYRMVRDAISAAG 527 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ + + E L L V + + EA + Y + Sbjct: 528 GCERALDGTDWLPAVSENMTDILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSRL 581 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + Q ++ Q+ ++ + + L S L + ++ Sbjct: 582 QETRVGNQIAILKGQLQRMRPSEDEQAYNSLFSDLVALEQARREL 626 >gi|145296223|ref|YP_001139044.1| DNA primase [Corynebacterium glutamicum R] gi|140846143|dbj|BAF55142.1| hypothetical protein [Corynebacterium glutamicum R] Length = 633 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 143/645 (22%), Positives = 258/645 (40%), Gaps = 40/645 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G YV PF DEKTPSFH ++G+ Sbjct: 7 RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CFS GD SFL + SF E+V+ A G + ++E+ + LI Sbjct: 63 YHCFSTGKGGDVFSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIL 122 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L+ + +L +RG I F+ GYAP +L +HL +KGF Sbjct: 123 ANKAAHQFYREQLETPEAQPGREFLLQRGFGQQHIYHFECGYAPAGWDTLTKHLLKKGFE 182 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 +++ AGL D+F+ RL++PI++ G VI FG R L + + KY+N+PE Sbjct: 183 FKELEAAGLSK--MGKRGPIDQFQRRLLWPIKNLSGDVIGFGARKLFDDDKMGKYMNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + + ++VEGY DV+++ AG++ V+S Sbjct: 241 TLLYKKSKVLFGLDSAKKAIA----------AGHQAVVVEGYTDVMAMHAAGIETAVASC 290 Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L++L ++ FDGD+ G +AA +A + + Sbjct: 291 GTAFGEEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSFVS 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A L+ +P+ + + + + +T + R Sbjct: 348 VAPNGMDPCDLRLERGDAAVRDLVARRIPMFEFVIQSIISEYTLDTVEGRLAALRRAVPI 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D+ L+ Y++ + + + + + R K++ + K Q L S Sbjct: 408 VADIRDKTLQSEYARLLSGWVGWSDPSEVLRQVHEEARRPKRDKKPVRAKRFDQPLEDQS 467 Query: 471 LVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L P +E L + +P + + L + N + + + + Sbjct: 468 LRPTMALPNPRNPVLWQERESLKIALQYPELAGSYFDGLPTDSFTNPAYRMVRDAISAAG 527 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ + + E L L V + + EA + Y + Sbjct: 528 GCERALDGTDWLPAVSENMTDILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSRL 581 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + Q ++ Q+ ++ + + L S L + ++ Sbjct: 582 QETRVGNQIAILKGQLQRMRPSEDEQAYNSLFSDLVALEQARREL 626 >gi|16800560|ref|NP_470828.1| DNA primase [Listeria innocua Clip11262] gi|20139534|sp|Q92BQ5|PRIM_LISIN RecName: Full=DNA primase gi|16413965|emb|CAC96723.1| DNA primase [Listeria innocua Clip11262] Length = 626 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 160/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + + + P+ K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVDIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMASFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+ AF GR + + KYL Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQINAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKINYLRKERNLQNETDKIAYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + K ++ P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNHSYNEPPIDDSFMGMIP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S K + E L+ ++ + Q L D + ++ Q L++ Sbjct: 465 QEDSEMLFSFEQPTKKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGDTEFYHDNYQALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + G L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L + K+E+E+Q+A + + E ++ + +++ +++ Sbjct: 574 YIKSLKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLN 621 >gi|291299310|ref|YP_003510588.1| DNA primase [Stackebrandtia nassauensis DSM 44728] gi|290568530|gb|ADD41495.1| DNA primase [Stackebrandtia nassauensis DSM 44728] Length = 616 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 151/648 (23%), Positives = 260/648 (40%), Gaps = 51/648 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + I+ +IG++V G+ CPFHDE+TPSF+ SKGF Sbjct: 4 RIRGEDVALVRERTDIAEVIGEHVTLKPAG----GGNLKGLCPFHDERTPSFNVTPSKGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-----IQTD 116 ++CF C GD +SFL+ L SF E+V+RLA+ AGV L D + + Sbjct: 60 FHCFGCGAGGDAISFLTELEHLSFAEAVERLASKAGVTLHYEDTDGRSSSRSQQPGRKQR 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ A F+ L + + +L ERG D A E F G+AP +L +HLR + Sbjct: 120 LLAAHTEAAKFYSEQLASPEARIARDFLSERGFDRDAAESFGCGFAPPGWDALTKHLRGR 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GF+ +++ E GL S + DRFR RL++PI G +I FG R LS+ ++ KYLN Sbjct: 180 GFTPDELTEGGLA-KPARSGSLIDRFRGRLVWPIHDLTGGIIGFGARRLSEDDNGPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET L+ K + LY A + K +++VEGY DV++ AGV V Sbjct: 239 TPETPLYKKSQVLYGIDAAKREIAK----------RRQVVVVEGYTDVMACHLAGVPTAV 288 Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA + +L + ++ FDGD+ G +AA KA + + Sbjct: 289 ATCGTAFGSDHINVLRRLLMDSDEFKGEVIFTFDGDEAGQKAALKAFGDEQRFVA---QT 345 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP G A +L+ LVD + ++ + R Sbjct: 346 YIAVSPGGMDPCELRMAQGDEAVRELVAGREHLVDFAIATTLASYDLDSVEGRVAALRAT 405 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + IKD+ L Y+Q + RL + R Q Q Sbjct: 406 APLVARIKDKSLHPGYTQRLAGRLGEDVDLVR--------------RWVHAARSKQAPPQ 451 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + K++ L E +L + HP + + E+ + + + + + + Sbjct: 452 AGPARRKVTGPRLLSERDVLKLAVQHPEMAGPYFDEVDETYFSDPMHVVVRRAIANAGGA 511 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + + + Y ++ Sbjct: 512 AAAASGPNWGMAISDACGD------LAAAALVAELAVEPLRIDGEPDTRYVATALAGVQW 565 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ Q E++ ++ ++ + ++E L L + ++ ++ + A Sbjct: 566 PVVEEQVAELKSKLQRMNPETDSEGYMKLFGELMALEQRLRGLKERAA 613 >gi|163841637|ref|YP_001626042.1| DNA primase [Renibacterium salmoninarum ATCC 33209] gi|162955113|gb|ABY24628.1| DNA primase [Renibacterium salmoninarum ATCC 33209] Length = 631 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 156/652 (23%), Positives = 268/652 (41%), Gaps = 45/652 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L I ++ YV G + CPFHDE++PSF+ G Y Sbjct: 5 IKQEDIEELRARTDIKEVVEGYVTLKSAG----VGSWKGLCPFHDERSPSFNVRPQVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + SF E+V++LAA G L D + + + L+ Sbjct: 61 HCFGCGEGGDVISFVQKVDHLSFSETVEKLAARIGFELHYEDGGSGPRREETGRRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +FF L +L RG D A E F +G+AP L +HLR +G+S Sbjct: 121 AHKVAAEFFRDQLLTPGAAAGRQFLSGRGFDRAAAEQFGVGFAPQGWDGLLKHLRGQGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 +E++ G+ G + +DRFR RLI+PIR G+ I FG R L + + KYLN+PE Sbjct: 181 DEELRLTGMFSTGSSGDRLFDRFRGRLIWPIRDIAGETIGFGARKLFEEDQGPKYLNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TIL+ K LY A + K +++VEGY DV++ +GV V++ Sbjct: 241 TILYKKSHVLYGIDLAKKAISK----------GRQLVVVEGYTDVMACHLSGVGTAVATC 290 Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA E +++ + ++ FDGD G AA KA L + + + Sbjct: 291 GTAFGEDHIKVARRLLSDDGTGGEVIFTFDGDAAGQNAALKAFSLDQRFVA---QTYVAV 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G+DP + G A + LI PL + + + + + R + + Sbjct: 348 EPSGQDPCDLRQSGGSEAVQALIASRRPLFEFAIRSALSHFDLSAVEGRVQGLRAAAPVV 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 I+D R YSQ + L ++ + T + R +K + + + S Sbjct: 408 AEIRDGSTRVGYSQELAGWLGIADPNEVLRAVTTAAKNHTRSQQKALQAQPGQTESTAAP 467 Query: 468 QSSLV----KGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFL 522 + + + E L ++ PA+L E + +I++ + + L Sbjct: 468 NPAQPLAFNRTDPRDPAARMERQGLEVVLQQPALLSEADWLNFNEIQFVVPAYRAVHEAL 527 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + Q++ E L+ L ++ L ++ E + R + L Sbjct: 528 HAAGR--PSTDTGAWLQKITEEAPEP-LRPLVSELSMTPLPASNDEGLLNYCRSMLRSLL 584 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + L+R K E + ++ + L L ++ +Q + + Sbjct: 585 EM-----QLTRAKAEKLGALQRMDPALDPAGYQQLQRELMQLEVQRRVLREE 631 >gi|205374115|ref|ZP_03226915.1| DNA primase [Bacillus coahuilensis m4-4] Length = 603 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 151/631 (23%), Positives = 297/631 (47%), Gaps = 38/631 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + ++ + I ++I YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEKVNEIRQSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 ++CF C G+ LSFL + G SF E+++ +A +G+ + V P ++ Q + Sbjct: 59 FHCFGCGAGGNVLSFLMDIEGSSFTEALKSVADRSGIAVDVSFPTDAADQESPEQKSIFE 118 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+ + F+HH L + + YL RG I+ F +G++ S + L+++GF Sbjct: 119 AHELLSKFYHHLLVNTKQGQDALDYLQNRGFTLDTIKEFNIGWSVPSWDFTVKFLKKRGF 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S +++ EAGL+I + +DRFR+R++FPI +G++IAF GR+L E+ KYLNSPE Sbjct: 179 SLDEMEEAGLVIRK-EDGSYFDRFRSRIMFPIWDEKGRIIAFSGRSL-NDETPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K + LYNF A ++KS +IL EG+ DV+S A V ++++ Sbjct: 237 TKVFNKSQILYNFHRARPAIKKS----------RQVILFEGFADVISAYAANVHTGLATM 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ ++ + +++ +VL FDGD+ G++AAY++ + G V + D Sbjct: 287 GTSLTDQHIQSIKRMAETVVLAFDGDNAGIQAAYRSAKM---LTDKGMSVRIAEIPDRLD 343 Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +IR YG F E +I ++ + ++ ++ + + I+H++ Sbjct: 344 PDDYIRKYGGERFSESVIGAAVTFMAFKLSYFKIGKNLQNEGDQLKYIEEILREISHLQS 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + + + + ++ + + +K + +L K KL Sbjct: 404 PVERDLYLKQLSEEFEISYEALKQQQTAMYFSERKRDPSQFVSKKVAQL--PLEKKNKLL 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + L+ ++ +E Q ++++L + + E Sbjct: 462 PAYINAERYLIAYMLKNEDVTYKVKDLLSGESFNIDEHQAIFTYLLAYYEEGNLPSASSF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ +++ + + TE N V++ + K+ ++L+ E Sbjct: 522 LSFISDDKLRRLVSEIE-------MLTIQTEMNPVELTDYVHSVI---KQQKMLT--IRE 569 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + + + K A + + +++ ++ Sbjct: 570 KEAEKKEAEKHKDYIKAAEIAMDIIKLNKEL 600 >gi|315303192|ref|ZP_07873850.1| DNA primase [Listeria ivanovii FSL F6-596] gi|313628435|gb|EFR96910.1| DNA primase [Listeria ivanovii FSL F6-596] Length = 626 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 159/649 (24%), Positives = 287/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YAGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKI--EKKEKIQT 115 ++CF C G+ SFL G +F+E+V+++A ++ + LP K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVAIELPEERDTAHLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMANFQIGFAPNHHATVTSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR+I PI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIIIPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF+K + L++F A ++K I L+EG+MDV+S +AG+QN Sbjct: 237 NSPETPLFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGIQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRSSGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSIKTSQKSRQTASYNEPPIDDSFMGIVP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L + + ++ Q L++ Sbjct: 465 QENPEILFSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETEFYHDNYQALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + R ++ Sbjct: 525 YLIGYFAEGNDADPNKFMDSVQDVAMKGLISSLEMVIS-----------PEEQGRLQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621 >gi|297248757|ref|ZP_06932475.1| DNA primase [Brucella abortus bv. 5 str. B3196] gi|297175926|gb|EFH35273.1| DNA primase [Brucella abortus bv. 5 str. B3196] Length = 492 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 217/458 (47%), Positives = 297/458 (64%), Gaps = 5/458 (1%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 37 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 96 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK+E + L + Sbjct: 97 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKREAQRATLYDV 156 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 157 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 216 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 217 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 276 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 277 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 331 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 332 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 391 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 392 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 451 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 R +YSQ +R+R Q F + G+ + R + Sbjct: 452 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNE 489 >gi|332980899|ref|YP_004462340.1| DNA primase [Mahella australiensis 50-1 BON] gi|332698577|gb|AEE95518.1| DNA primase [Mahella australiensis 50-1 BON] Length = 589 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 167/631 (26%), Positives = 285/631 (45%), Gaps = 48/631 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + R+++ ++ I ++IG+Y+ N + A CPFH+EKTPSF + K Y Sbjct: 5 FDREWVDEVRSRNDIVDVIGEYLKLKPSGRN-----FMALCPFHNEKTPSFSVSPDKQIY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ + F+ A+ F E+V+ LA AG+P+P + + L RL Sbjct: 60 HCFGCGAGGNVIGFIMAMERVDFTEAVKLLAKRAGIPIPENYMRGA-VADAREALYRLNT 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +FH L++ K YL RG+++ I F LG+AP L++HL G+ ++ Sbjct: 119 ETARYFHRCLRSDEGKAAREYLMRRGVEAKTIVKFGLGFAPAKWDGLKQHLLSLGYDQKH 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++++GL++ SYDRFRNR++FPI R ++I FGGR L KYLNSP+T LF Sbjct: 179 MLDSGLIVASKAGDQSYDRFRNRVMFPIFDVRKRIIGFGGRVL-DDSLPKYLNSPDTALF 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG+NLY II+VEGYMD + L Q GV N V+SLGTAL Sbjct: 238 HKGQNLYALDIVAKA-----------RDLECIIVVEGYMDAVMLHQYGVDNAVASLGTAL 286 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE Q +L+ + + +I++C+DGD G +AA + +D+ L G V + L G DPD F Sbjct: 287 TEEQAKLMKRYAQKIIICYDGDIAGKKAATRGLDI---LLNQGLDVYVLTLPDGVDPDEF 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R +GK AF + + + P +D +T + + + I D + Sbjct: 344 VRKHGKDAFLRSVRSAKPWLDYSMDVLASRYDISTTNGKTSFAKEAVKLLGGINDPIQKD 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + I + K + R+ + Sbjct: 404 LYLKGIERYSGVSLEIL---------------YGYMNKSKTARISKEGQGVAHKISAVQK 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E LL + N P + Q + ++N +K++ + + + + P ++ Sbjct: 449 AEQELLNIMANQPEMAAIIMQRITADDFENELHKKIFDIMSERYKKGEKPSPADVFSYF- 507 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L + + L T E ++ + Q + KR ++ ++ + + K+ Sbjct: 508 ----------LGEKAEKSVLSIFTNEPRYDNINKFAAQCINTIKRNKIAMKR-QFLCKKA 556 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + G+ E IL+ ++ + ++ ++ Sbjct: 557 DDLASAGDREALNILLEQINALDKELLDLKE 587 >gi|256375413|ref|YP_003099073.1| DNA primase [Actinosynnema mirum DSM 43827] gi|255919716|gb|ACU35227.1| DNA primase [Actinosynnema mirum DSM 43827] Length = 629 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 145/647 (22%), Positives = 252/647 (38%), Gaps = 40/647 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G +V R G CPFHDEK+PSF+ S G Sbjct: 4 RIRETDIALVRDRSSIEDVVGDHVSLRRAG----GGSLKGLCPFHDEKSPSFNVRPSHGT 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + F+ESV+RLA AG+ L + ++ L+ Sbjct: 60 FHCFGCGEGGDVIAFIMKIEHLGFVESVERLADRAGIQLTYEGGGATIQRDRGTRSRLLE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L +L +RG D A F G+AP L +HL +GF Sbjct: 120 AHRAAAEFYAEQLATPDAMPAREFLAQRGFDEAAARQFGCGFAPHGWDKLTKHLLGRGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237 ++I+A L + DRF RL++PIR G V+ FG R + + ++ YLN+ Sbjct: 180 LTELIKAQLTKE--GRQGPIDRFHRRLLWPIRDLGGDVVGFGARRIFDDDPIQAKYLNTS 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++ K L+ A + K ++VEGY DV+++ AGV V+S Sbjct: 238 ESPIYKKSHVLFGLDLAKREIAK----------RRQAVVVEGYTDVMAMHLAGVPTAVAS 287 Query: 298 LGTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + +L + ++ ++ FDGD G +AA KA + + Sbjct: 288 CGTAFGADHMNVLRRLLIDDSVNGEVIFTFDGDAAGQKAALKAFEGEQQFSA---QTYIA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A L+ PLV+ K + + ++ D RAE + Sbjct: 345 VAPDGMDPCELRQEKGDVAVRDLVARRTPLVEFAIKAQLRDYDLDSVDGRAEALRKMVPF 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + IKD R Y+ + + + + + E + R D + + Sbjct: 405 VAQIKDSSKRDGYATRLAWWVGWEDEASVVRRVRETATGTAKAAPRRRPVDPNQGALDVA 464 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + L + P ++ Y L D + N L L Sbjct: 465 VDAPPRPNPRDPALWHQREALKAALQVPEMVSPYYDSLPDEAFTNPLYLALHRALREAGG 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + + L ++ L + E Y Q++ + Sbjct: 525 TASGLTGPALVDAVGQACPVPSARPLLTELAVEPLRTKGDEY-------RYVQSVLARLQ 577 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L+ Q EI+ ++ +V+ EA++ L L + ++ Q Sbjct: 578 QVLVGAQITEIKSRLRRVSPIEEADEYRALFGDLIALEEYHKELGQQ 624 >gi|261418499|ref|YP_003252181.1| DNA primase [Geobacillus sp. Y412MC61] gi|319767540|ref|YP_004133041.1| DNA primase [Geobacillus sp. Y412MC52] gi|261374956|gb|ACX77699.1| DNA primase [Geobacillus sp. Y412MC61] gi|317112406|gb|ADU94898.1| DNA primase [Geobacillus sp. Y412MC52] Length = 598 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 162/632 (25%), Positives = 270/632 (42%), Gaps = 45/632 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++IG+YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AG+ L + + + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + F+HH L + YL RG I+ F++GYAPD + + L + Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVKLLESR 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F + +AGLL+ DRFRNR++FPI RG+ + F GR L KY+NS Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY F A ++K +LVEG+ DV+S QAGV VV+ Sbjct: 237 PETPIFRKGTLLYFFHEARMSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L + + + +C+DGD G AA++A + G RV LL G Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G F + I + PL+ R ++ +R I+ + Sbjct: 344 LDPDEYIRTSGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + D + S K + K L + KL Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPSQPALTK------KL 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + +++ R++ E + L +++++ + E P Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEKVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL +L + L + + ++ + L K + Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSERELADCIRHVLNHPKWL-----MLK 563 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E E++ + + + A + + E+ + Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595 >gi|56421018|ref|YP_148336.1| DNA primase [Geobacillus kaustophilus HTA426] gi|56380860|dbj|BAD76768.1| DNA primase [Geobacillus kaustophilus HTA426] Length = 598 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 162/632 (25%), Positives = 269/632 (42%), Gaps = 45/632 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++IG+YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AG+ L + + + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + F+HH L + YL RG I+ F++GYAPD + L + Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVRLLESR 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F + +AGLL+ DRFRNR++FPI RG+ + F GR L KY+NS Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY F A ++K +LVEG+ DV+S QAGV VV+ Sbjct: 237 PETPIFRKGTLLYFFHEARVSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L + + + +C+DGD G AA++A + G RV LL G Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G F + I + PL+ R ++ +R I+ + Sbjct: 344 LDPDEYIRTCGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + D + S K + K L + KL Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPVRPALTK------KL 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + +++ R++ E + L +++++ + E P Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEQVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL +L + L + + ++ + L K + Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSDRELADCIRHVLNHPKWL-----MLK 563 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E E++ + + + A + + E+ + Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595 >gi|300788424|ref|YP_003768715.1| DNA primase [Amycolatopsis mediterranei U32] gi|299797938|gb|ADJ48313.1| DNA primase [Amycolatopsis mediterranei U32] Length = 637 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 137/652 (21%), Positives = 254/652 (38%), Gaps = 41/652 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ I ++G+YV R G CPFH+EKTPSF+ + G Sbjct: 7 RIRESDIAEVRERNRIDEVVGEYVALRRAG----GGSLKGLCPFHNEKTPSFNVRPTHGT 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD + F+ + +F+E+V+RLA G+ L + +T L+ Sbjct: 63 FHCFGCGEGGDVIKFVQKIDLITFVEAVERLADRVGIRLTYEGGGATIQRDRGSRTRLVE 122 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F+ L + +L ERG D+ + F GYAP L + L +GF Sbjct: 123 AHRLAQEFYAEQLVTDEARPARDFLSERGFDAAMAKTFGCGYAPGGWDKLTKFLLNRGFE 182 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++ AGL +G DRF RL++PIR V+ FG R L + + KYLN+ Sbjct: 183 VKELLTAGLSKEGQR--GPMDRFHRRLVWPIRDVGNDVVGFGARRLFDDDRISAKYLNTA 240 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++ K + ++ A + K +++VEGY DV+++ +GV V+S Sbjct: 241 ESPIYKKSQVMFGLDLAKREIAK----------RHQVVVVEGYTDVMAMHASGVPTAVAS 290 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E +++L +L ++ FDGD+ G +AA KA + + Sbjct: 291 SGTAFGEDHMKVLRRLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 347 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G +A + L+ PL + + + +N ++ D + Sbjct: 348 AVAPDGMDPCELRLAKGDSAVKDLVARRTPLFEFVIRSTLKNYDLDSVDGQVAALQKTVP 407 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + IKD+ R Y+ + + Q+ + + R + G + Sbjct: 408 MVASIKDRAARDGYASKLAWWVGWQDVAQVVNRVRGSAGATDKRGGAPLRQPARVGAPEA 467 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + L + PAI +Y L + + + + Sbjct: 468 PAAQDVARPAPKDPRFAVQREALKAALQQPAIAGPEYDALPLEAFTHPVYVAVHEAVLKA 527 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + ++++ ++ L +V Y ++ Sbjct: 528 GGAGSGLTGPALLDAAAPHCPEGTVRRVLSELAVEPLQ------AKDEVDSRYISSILAR 581 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + L+ RQ EI+ ++ +++ + L L + + Q A Sbjct: 582 LQEGLVGRQIAEIKGKLQRLSPVEAPDDYRALFGDLVALEQYKKSLGEQAAA 633 >gi|259503186|ref|ZP_05746088.1| DNA primase [Lactobacillus antri DSM 16041] gi|259168843|gb|EEW53338.1| DNA primase [Lactobacillus antri DSM 16041] Length = 623 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 155/648 (23%), Positives = 277/648 (42%), Gaps = 43/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR I ++ + I ++IG+YV + N + CPFH+E+TPSF N K + Sbjct: 3 RIPRTVIDEVRNSVDIVDVIGRYVQLKKAGKN-----FTGLCPFHNEQTPSFSVNAEKQY 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ FL SF+E+V +A AG+ LP D + Sbjct: 58 YHCFGCGRSGNVFQFLMDYQHISFVEAVTAVAKDAGISLPDQYVQSADRPTTPADSENGQ 117 Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L + A + +H+ L + YL RG+ I+ F+LG+AP+ L+ + + Sbjct: 118 LLQLHQKAAELYHYILVGTPAGEAGLRYLTRRGVSRELIDQFQLGFAPEQ-QVLKAYCDK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKY 233 + + + ++GL + +DRF R+++PI++ RGQVIAF GR LS ++ KY Sbjct: 177 EKLDYQLLRKSGLFTEDHAG-QLHDRFAERVMYPIKNRRGQVIAFSGRLLSTDQTDLPKY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF+K + L+N A ++ + + L EG+MDV+S AGVQ Sbjct: 236 LNSPETPLFNKRRTLFNLDQARKAARQDGK----------LYLFEGFMDVISAFGAGVQA 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GT+ TE Q+ ++ + + ++ +C+DGD G A +AI LV +V V L Sbjct: 286 GIASMGTSFTEEQVGIIHRTTTQLNICYDGDQAGQNAIDRAIKLVESQPTGNLQVRVVQL 345 Query: 354 SRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DPD +++ +G F + L + VD + + R+ + +R + + I Sbjct: 346 PAGVDPDEYVQRFGAEKFRQYLASQEETTVDFYLRFLRQGRNLDQQGDRMDYLNQVLKVI 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + Y + ++ + N Q + Q + Sbjct: 406 AKVPTPLEQDLYLTKLAQEFSLDKAALQSQLTQLSSRSGGNQPRSGQDYRGRVTDQPPVA 465 Query: 473 KGKLSKKP-----SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + L E LL +++ + + + Q L+ S F Sbjct: 466 AVEARPQIKISRAELAEQMLLYYMLHSQEVWAHVTAT-TGFHFVHERYQTLYLLAASYFT 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + L E L Q+++ + + + + + R Sbjct: 525 EHGDYSVADFLNYLNEDELRLTLSQVEQLRINPAVQMPVVD-----------DCMRIITR 573 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L Q ++++KQ+ + E L L + + Q +++E Sbjct: 574 QTPLDDQIDQVQKQLREANTLNNTELVMKLTVKLVNLLKEQQQYKAEE 621 >gi|312869078|ref|ZP_07729252.1| DNA primase [Lactobacillus oris PB013-T2-3] gi|311095324|gb|EFQ53594.1| DNA primase [Lactobacillus oris PB013-T2-3] Length = 623 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 159/648 (24%), Positives = 281/648 (43%), Gaps = 43/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR I ++ + I ++IG+YV + N + CPFH+E+TPSF N K + Sbjct: 3 RIPRAVIDEVRNSVDIVDVIGRYVQLKKAGKN-----FTGLCPFHNEQTPSFSVNAEKQY 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ FL +F+E+V +A AG+ LP + + Sbjct: 58 YHCFGCGRSGNVFQFLMDYQHINFVEAVAAVAKDAGISLPEQYVQSSNHPAAPVDSETGQ 117 Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 LI+L + A + +H+ L + +YL RG+ I+ F+LG+AP+ L+ + + Sbjct: 118 LIQLHQKAAELYHYILVGTPAGEAGLHYLTRRGVSRELIDQFQLGFAPEQ-QVLKAYCDK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKY 233 + + + ++GL + +DRF NR+++PI++ RGQVIAF GR LS + KY Sbjct: 177 EKLDYQLLRKSGLFTEDREG-QLHDRFANRVMYPIKNRRGQVIAFSGRLLSTVNTDLPKY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F+K + L+N A ++ + + L EG+MDV+S AGVQ Sbjct: 236 LNSPETPIFNKRRTLFNLDVARKAARQDGK----------LYLFEGFMDVISAFGAGVQG 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GT+ TE Q+ + + + ++ +C+DGD G A +AI LV +V V L Sbjct: 286 GVASMGTSFTEEQVGTIHRTTTQLDICYDGDSAGQNAIDRAIKLVESQQTGNLQVRVVQL 345 Query: 354 SRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DPD +++ +G F + L + VD + + R+ + ER + + I Sbjct: 346 PAGIDPDEYVQRFGPEKFRQYLASQEETTVDFYLRFLRQGRNLDQQGERMDYLNQVLKVI 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + Y + L + + G + A + + SQ Sbjct: 406 ATVPTPLEEDLYLSKLAQEFSLDKAALQSQLAQVRAQTGIRQPRPAPGQRNQLTSQSPAA 465 Query: 469 SSLVKGKLS-KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + ++ + L E LL +++ + A + + Q L+ S F Sbjct: 466 VVESRPQVKISRAELAEQMLLYYMLHSQEVWAHVTAT-AGFHFVHERYQTLYLLAASYFT 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + L E L Q+++ + + + + + R Sbjct: 525 EHGDYSVADFLNYLNEDELRTTLSQIEQLRVNPAVQMPVID-----------DCMHIITR 573 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L Q +++KQ+ + E L L ++ + Q +++E Sbjct: 574 QTPLDDQINQVQKQLREANTLNNTELVMKLTVKLVDLLKEQQQYKAEE 621 >gi|297529351|ref|YP_003670626.1| DNA primase [Geobacillus sp. C56-T3] gi|297252603|gb|ADI26049.1| DNA primase [Geobacillus sp. C56-T3] Length = 598 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 162/632 (25%), Positives = 270/632 (42%), Gaps = 45/632 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++IG+YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRGVDIVDVIGEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AG+ L + + + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYELDSRGSDGSRADEAKAM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + F+HH L + YL RG I+ F++GYAPD + + L + Sbjct: 119 VEAHTLLKRFYHHLLVHTKEGQAALDYLQVRGWTKETIDRFEIGYAPDVPDAAVKLLESR 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F + +AGLL+ DRFRNR++FPI RG+ + F GR L KY+NS Sbjct: 179 SFPLVLMEKAGLLVKK-EDGRYVDRFRNRIMFPIHDHRGETVGFSGRLL-GDGQPKYMNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY F A ++K +LVEG+ DV+S QAGV VV+ Sbjct: 237 PETPIFRKGTLLYFFHEARVSIRK----------RQEALLVEGFADVISAVQAGVDYVVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L + + + +C+DGD G AA++A + G RV LL G Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDSAGTEAAWRAAE---QLSAFGCRVKVALLPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G F + I + PL+ R ++ +R I+ + Sbjct: 344 LDPDEYIRTCGADRFAEEIAAARPLMAFKMDRLRRGKNLQEEGDRLRYIEEALREISKLS 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + D + S K + K L + KL Sbjct: 404 SPVEKDYYMRQLADEFSLSLSALYEQLSRSKPEQPKPQVNDGGKPAQPALTK------KL 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + +++ R++ E + L +++++ + E P Sbjct: 458 LPAFQNAERLLLAHMMRSRDVAFIVQEKVGG-RFNIEEHRALAAYIYAFYEEGHEADPSA 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL +L + L + + ++ + L K + Sbjct: 517 LMSRLPG--------ELRTLASELSLLLVADDVSERELADCIRHVLNHPKWL-----MLK 563 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E E++ + + + A + + E+ + Sbjct: 564 EKEQEKTEAERRKDFLTAARIAKEMIEMKKML 595 >gi|25028725|ref|NP_738779.1| DNA primase [Corynebacterium efficiens YS-314] gi|259507786|ref|ZP_05750686.1| DNA primase [Corynebacterium efficiens YS-314] gi|23494011|dbj|BAC18979.1| putative DNA primase DnaG [Corynebacterium efficiens YS-314] gi|259164579|gb|EEW49133.1| DNA primase [Corynebacterium efficiens YS-314] Length = 645 Score = 388 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 140/646 (21%), Positives = 255/646 (39%), Gaps = 41/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G YV PF DEKTPSFH ++G+ Sbjct: 18 RIPESDIQAIRERTPIEEIVGDYVQLKSAGA----DSLKGLSPFKDEKTPSFHVRPNRGY 73 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CFS GD SFL + SF E+V+ A G + ++E+ + LI Sbjct: 74 YHCFSTGKGGDVYSFLMEMEHISFPEAVEVCAEKIGYQINYQGGGPGRREEPGTRQRLIA 133 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L+ + +L +RG I F+ GYAP +L +HL +KGF Sbjct: 134 ANKAAHQFYREQLETPEAQPGRDFLLQRGFSKEHIYHFECGYAPAGWDTLTKHLLKKGFE 193 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 ++ AGL D+F+ RL++PI++ G VI FG R L + + KY+N+PE Sbjct: 194 FRELEAAGLSK--MGRRGPIDQFQRRLLWPIKNLAGDVIGFGARKLFDDDKMGKYMNTPE 251 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + S ++VEGY DV+++ AG+ V+S Sbjct: 252 TLLYKKSKVLFGLDTAKRAIA----------QSHQAVVVEGYTDVMAMHAAGINTAVASC 301 Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + L++L ++ FDGD+ G +AA +A + + Sbjct: 302 GTAFGDEHLQMLRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYVA 358 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + +G DP G A L+ +P+ + + + +T + R Sbjct: 359 VAPQGMDPCDLRLERGDAAVRDLVASRVPMFEFVIQSIISEYPLDTVEGRLNALRRAVPI 418 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------DQKGPSQR 465 + I+D+ L+ Y++ + + + + K + + D + + Sbjct: 419 VAGIRDRTLQSEYARLLAGWVGWPDPAEVLQQVHEEVRRPKPQKRQMRATRFDAQNLEDQ 478 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + +V +E L + HP + + LA + N + + + + Sbjct: 479 SSRPQMVMPDPRNPALWQERESLKIALQHPELAGSYFDGLAVDCFTNPAYRMVRDAITAA 538 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ + R+ E L L V + + EA + Y + Sbjct: 539 GGCEQATGGVDWLPRVSENMADILGTSL---VSELAMEPIEVEAQD---LESYTDGVLSR 592 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + Q ++ Q+ ++ + + L + L + ++ Sbjct: 593 LQETRVGNQIAVLKSQLQRMRPSDDEQAYNSLFADLVALEQARREL 638 >gi|116872886|ref|YP_849667.1| DNA primase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741764|emb|CAK20888.1| DNA primase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 626 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 160/649 (24%), Positives = 292/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + + + P+ K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVDIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +I + ++ +H+ L YL ERG+ H + F++G+AP+ ++ L Sbjct: 118 KMIEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEHMMASFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKINYLRKERNLQNETDQIAYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNAQKSRQITSYNEPPIDDSFMGMIP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ + Q L + + ++ Q L++ Sbjct: 465 QEDSEMLFSFEQPTQKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGETEFYHDNYQALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNEADPNKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKTQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L + K ++E+Q+A + + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQTKRKLEQQLAAFNRENDKENEIRVMLEIVQLNRQLN 621 >gi|47095406|ref|ZP_00233016.1| DNA primase [Listeria monocytogenes str. 1/2a F6854] gi|254827743|ref|ZP_05232430.1| DNA primase [Listeria monocytogenes FSL N3-165] gi|254829786|ref|ZP_05234441.1| DNA primase [Listeria monocytogenes 10403S] gi|254898379|ref|ZP_05258303.1| DNA primase [Listeria monocytogenes J0161] gi|254912129|ref|ZP_05262141.1| DNA primase [Listeria monocytogenes J2818] gi|254936457|ref|ZP_05268154.1| DNA primase [Listeria monocytogenes F6900] gi|284801842|ref|YP_003413707.1| DNA primase [Listeria monocytogenes 08-5578] gi|284994984|ref|YP_003416752.1| DNA primase [Listeria monocytogenes 08-5923] gi|47016227|gb|EAL07150.1| DNA primase [Listeria monocytogenes str. 1/2a F6854] gi|258600122|gb|EEW13447.1| DNA primase [Listeria monocytogenes FSL N3-165] gi|258609049|gb|EEW21657.1| DNA primase [Listeria monocytogenes F6900] gi|284057404|gb|ADB68345.1| DNA primase [Listeria monocytogenes 08-5578] gi|284060451|gb|ADB71390.1| DNA primase [Listeria monocytogenes 08-5923] gi|293590100|gb|EFF98434.1| DNA primase [Listeria monocytogenes J2818] Length = 626 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 158/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGAAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + ++ E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEDTEMLFSFEQPTQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KR++ L ++K+E+E+++A + + E ++ + +++ Q++ Sbjct: 574 YIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 621 >gi|114799204|ref|YP_761567.1| DNA primase [Hyphomonas neptunium ATCC 15444] gi|114739378|gb|ABI77503.1| DNA primase [Hyphomonas neptunium ATCC 15444] Length = 627 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 186/631 (29%), Positives = 295/631 (46%), Gaps = 23/631 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P F+ +L I S++IG+ V ++ ++ PF EKTPSF+ ND K Sbjct: 7 RIPDGFVDELKARIRPSDVIGRKVKLTKKGK-----EWVGLSPFTAEKTPSFYVNDQKRI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CFS + GD ++F+ SF+E+V++LA AG+ LP P ++ + L Sbjct: 62 FKCFSSGMGGDVINFVMETERLSFMEAVEKLAEEAGMALPKASPAAAEEYDHRKRLQAAC 121 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A DFF L+++ YL+ RG+ + + ++LGYAPD R HL+ +GF++ Sbjct: 122 EAAADFFEARLRSSEGAGARTYLEGRGLAASSWSKYRLGYAPDDWRRTRAHLQAEGFTDG 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++EAG++ + D YD FR RL+FPI SRG +IAFGGR L KYLNS +T L Sbjct: 182 ELLEAGIIKENDKGGEPYDAFRGRLMFPIPDSRGGIIAFGGRALQPDAKPKYLNSGDTPL 241 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK LY + A L +I+ EGYMDV+++C+AG N V+ LGTA Sbjct: 242 FHKSTVLYRYKAAREALG--------HGEGGGLIVCEGYMDVIAMCEAGFGNAVAPLGTA 293 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE QL+LLW+ P V+CFDGD GL AAY+A+D L PG V FVLL G DPD Sbjct: 294 LTEEQLQLLWRAGPEPVMCFDGDKAGLGAAYRALDRALPFAEPGRSVFFVLLPDGMDPDD 353 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR G A + + LPL ++LW+RE + +TP+ +A LE L HI+ ++ Sbjct: 354 LIRARGAGAMSEQLAARLPLSELLWRRERDAEPLDTPERQAGLEARLIAACGHIRHPGVK 413 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + ++ RL+ + + R + + K + Sbjct: 414 SAYERDLKSRLRDHLWQLREAKRAANYQKRPGRPGRPGSAQIPPGGEEAQELLKQGGREK 473 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + L+++ +++P +L + LA + L + + I L Sbjct: 474 IGGLRLIMSAVDNPGLLSIGAELLAQCAPAEPDAAFLRDAVLDLANDGIPIDRGTITAHL 533 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + G L + + +EA ++ L ++F R+ + E Sbjct: 534 TKSGNIRAAGLLKDYPVTPQIATNGSEA---------REWLIALEQFVA-KRRSRDQETG 583 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +A + + ++ + ++ Sbjct: 584 SGTDSASADPTLSPQEWRRRLQMVAERRALK 614 >gi|269127407|ref|YP_003300777.1| DNA primase [Thermomonospora curvata DSM 43183] gi|268312365|gb|ACY98739.1| DNA primase [Thermomonospora curvata DSM 43183] Length = 629 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 165/646 (25%), Positives = 262/646 (40%), Gaps = 40/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + PI++++G+Y+ GD CPFHDEKTPSF+ S+G Sbjct: 4 RIRNEDIALVRERSPIADVVGEYLQLRSAG----GGDLKGLCPFHDEKTPSFNVTPSRGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 Y+CF C GD ++F+ + +F+E+V+RLAA AGV L + + + + LI Sbjct: 60 YWCFGCGEGGDVITFVQKMEHLTFVEAVERLAARAGVELRYEEGGYAPRRQDGQRARLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L +L ERG D+ E F +GYAP +L HLR +GF+ Sbjct: 120 AHKAAAQFYAEQLAGEEAAIGRRFLAERGFDASHAEHFGVGYAPRGWETLVRHLRGRGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++I GL + DRFR RL++PIR G VI FG R L + + KYLN+PE Sbjct: 180 DRELIAGGLARE--GRRGPVDRFRGRLVWPIRDMTGDVIGFGARKLYEDDDGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K LY A + + ++VEGY DV++ AGV V++ Sbjct: 238 TPLFKKSTVLYGADLAKKEMAR----------RRQAVIVEGYTDVMACHLAGVTTAVATC 287 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E +LL + I+ FDGD G RAA +A + G + Sbjct: 288 GTAFGEEHAKLLRRLLMDQPDARAEIIFTFDGDAAGQRAALRAYEQDQRL---GAQTFVA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP +G A LI L + + + E T + R Sbjct: 345 VQPDGLDPCDLRLKHGDAAVRDLIASRTQLFEFVIRATIERYDLTTNEGRLAALDAAAPV 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + IKD LR Y+ ++ L + + + I E +G R P + Sbjct: 405 VAGIKDAGLRKMYATSLDRWLGIMDERFVLRRIREQAGRARAGGAARTGVAGGRPERARP 464 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 ++ L RE LL + PA++ + +L + + + + + Sbjct: 465 AAAEPGHDLGDPDVQREWELLKLAVQRPAVVGPAFDQLPESAFTAPPHAAVRAVIAQAGG 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 P + RL E E + L ++ L A + Y L Sbjct: 525 VAAASGP-DWAVRLREAAPNERVAALITRLAVEPLRLA------GETDDRYANELLARIW 577 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R L+ + ++ ++ ++ + L L + Q + Sbjct: 578 ERQLTGEIAALKAKLERLNPVEHPDDYNRLFGDLVALEQQRRVMRE 623 >gi|46907683|ref|YP_014072.1| DNA primase [Listeria monocytogenes serotype 4b str. F2365] gi|226224056|ref|YP_002758163.1| DNA primase [Listeria monocytogenes Clip81459] gi|254824486|ref|ZP_05229487.1| DNA primase [Listeria monocytogenes FSL J1-194] gi|46880952|gb|AAT04249.1| DNA primase [Listeria monocytogenes serotype 4b str. F2365] gi|225876518|emb|CAS05227.1| DNA primase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593724|gb|EFG01485.1| DNA primase [Listeria monocytogenes FSL J1-194] Length = 626 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 158/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + + + + ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621 >gi|313633238|gb|EFS00107.1| DNA primase [Listeria seeligeri FSL N1-067] Length = 626 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 156/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDHVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 ++CF C G+ SFL G +F+E+V+++A ++ + + + P+ K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVEIELPEERDTAHLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGVAALTYLKERGMSEQMMATFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AA+KA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + + + + + + +K + P Sbjct: 405 KLDQAVERELYLKQLAEEFELTIETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L + ++ ++ Q L++ Sbjct: 465 QEDTEMLYSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + R ++ Sbjct: 525 YLIGYFAEGNEADPNKFMDSVGDAAMKGLISSLEMVIS-----------PEEQGRIQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621 >gi|254932640|ref|ZP_05265999.1| DNA primase [Listeria monocytogenes HPB2262] gi|664755|gb|AAC43305.1| DNA primase [Listeria monocytogenes] gi|293584199|gb|EFF96231.1| DNA primase [Listeria monocytogenes HPB2262] gi|332311896|gb|EGJ24991.1| DNA primase [Listeria monocytogenes str. Scott A] gi|1093601|prf||2104269B DNA primase Length = 626 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 158/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQISYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + + + + ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621 >gi|16803495|ref|NP_464980.1| DNA primase [Listeria monocytogenes EGD-e] gi|224499694|ref|ZP_03668043.1| DNA primase [Listeria monocytogenes Finland 1988] gi|224501604|ref|ZP_03669911.1| DNA primase [Listeria monocytogenes FSL R2-561] gi|17433299|sp|P47762|PRIM_LISMO RecName: Full=DNA primase gi|16410884|emb|CAC99533.1| DNA primase [Listeria monocytogenes EGD-e] Length = 626 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGAAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + + R+ E+ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRKERNLQNETEQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + ++ E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEGAEMLFSFEQPAQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KR++ L ++K+E+E+++A + + E ++ + +++ Q++ Sbjct: 574 YIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 621 >gi|258511945|ref|YP_003185379.1| DNA primase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478671|gb|ACV58990.1| DNA primase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 601 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 183/641 (28%), Positives = 294/641 (45%), Gaps = 50/641 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P FI L + I +I +YV + Y CPFH+E+TPSF + + Sbjct: 1 MNVPETFIDTLRQKVDIVEVISEYVPLRKSGR-----SYVGLCPFHNERTPSFSVSPERQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G FL + G SF E+V LA G+PLP + + Sbjct: 56 VYHCFGCGAGGTVFRFLMDIEGISFAETVTLLAERCGIPLPDSLHAPAPRSPRLERYRQA 115 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A F+H L N + +YL RGI + F+LGYAP S ++ L+QKGFS Sbjct: 116 HDLAAKAFNHILMNTDAGVQALHYLLSRGISRTTMATFQLGYAPPSGRAMMSFLQQKGFS 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E++I GL +D DRFR R+I PI RGQV+AFG R L KYLNSPE Sbjct: 176 AEELIACGLAVD--LGGELVDRFRGRVIIPIADRRGQVVAFGARALDDDAKPKYLNSPEY 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG+ L+N A +++ R +L+EGYMDVL++ QAG++ V++LG Sbjct: 234 ELFHKGRMLFNVHRARKAIRRERRA----------LLLEGYMDVLAVAQAGIECAVATLG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q +LL ++V+ +DGD+ G +A +AI++ G + L G DP Sbjct: 284 TSLTEEQAQLLKADCDKVVIAYDGDEAGRKATVRAIEV---LEQAGVTPVVLRLPDGMDP 340 Query: 360 DSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D +IR +G AFE+++ ES V L + + +P R E + + Sbjct: 341 DEYIRAHGARAFERMLSESTWTAVQFLIEDMRARAEWVSPAGRTEFLRQVLRLLAERASP 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + + E G+ + ++ + R++ P +++ K ++S Sbjct: 401 VEQEYQLRNLSQEFNLSVETLKEEMRGFAKPLRRRSPPREEVTPWVNSPRAAKGKDQVSL 460 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L + + ++ + L S ++S +EQ P Sbjct: 461 R-------ILQAALFSQEAAEYLMEK-GVTELAHPLHTALLSHVYSWRLEQPGQPPSAFI 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 RL + L L L+ E + + + Y +AL L++ L ++ +E Sbjct: 513 DRLEDEELVRLASSL--------LFDEPPEITVE-LVEDYLRALELFR----LEQELKEK 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + A G+ EK+ E+ +Q+ I+SQ A ++ Sbjct: 560 VRAWNEAEAAGDQEKS-------REIKLQVEWIQSQMATMK 593 >gi|217964399|ref|YP_002350077.1| DNA primase [Listeria monocytogenes HCC23] gi|217333669|gb|ACK39463.1| DNA primase [Listeria monocytogenes HCC23] gi|307571036|emb|CAR84215.1| DNA primase [Listeria monocytogenes L99] Length = 626 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + S + + E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEDTEMPFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKPQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + + + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 621 >gi|290894217|ref|ZP_06557186.1| DNA primase [Listeria monocytogenes FSL J2-071] gi|290556214|gb|EFD89759.1| DNA primase [Listeria monocytogenes FSL J2-071] Length = 626 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 159/649 (24%), Positives = 291/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSSLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGMAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSIKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + S + + E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEDTEMPFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKPQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + + + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 621 >gi|326334015|ref|ZP_08200244.1| DNA primase [Nocardioidaceae bacterium Broad-1] gi|325948164|gb|EGD40275.1| DNA primase [Nocardioidaceae bacterium Broad-1] Length = 628 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 143/647 (22%), Positives = 256/647 (39%), Gaps = 35/647 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+++ + +++ QYV R G Y CPFHDEK+PSF+ N S+GF Sbjct: 4 RIKETSIQEVREKARLDDIVSQYVTLRRAG----PGTYKGLCPFHDEKSPSFNVNPSRGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 Y CF C GD + F+ L G SF E+V+RL GV + + ++ + L+ Sbjct: 60 YKCFGCGEGGDVIDFVMKLDGLSFFEAVERLGDKVGVQVQREEGDEAPVRRGPGRGKLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +F+ L +L E+G D A +F +G++P L HLR +GFS Sbjct: 120 AHKVAAEFYAEQLLTPDAVVARQFLAEKGFDRDAALLFGVGFSPRGGEDLYRHLRARGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +E+++ AGL+ + YDRFR RL++PIR S G VI FG R L + + KYLN+ Sbjct: 180 DEEVVTAGLV---AQGRSHYDRFRGRLMWPIRESGGDVIGFGARRLFDDDRIEAKYLNTS 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K LY A + + + ++VEGY DV++ AG+ V++ Sbjct: 237 ETPIYKKSHVLYGIDLARKEMAR----------TREAVIVEGYTDVMACHLAGITTAVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG----NRVNFVLL 353 GTA + ++L + L ++ + Sbjct: 287 CGTAFGDDHAKVLRRFISDDQQLRGAVVFTFDGDAAGQAAALKAFKGDGNFTSQTYVAVE 346 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP+ G A +L+ +PL + + + + D R + + Sbjct: 347 PDGLDPNDLRIKKGDEAVRELLANRVPLYEFVLRNVASKYDLDRADGRVDALREAAPLVA 406 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR----LMQS 469 ++D+ + +++ + L + E A ++ S ++ Sbjct: 407 SVRDESKKMGFTRDLARFLGVDPDEAAREVRRAAGRPAPQAAPPRREAVSASAESGPRRA 466 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + E L + HP L E+ + + + LW + Sbjct: 467 APPMPHPREPRFTVERETLKLFVQHPVALGRTTSEITPEAFTHPLYRALWEIIAGLGGPG 526 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 Q+L L+ ++ ++ + SA E + V Q + L L + Sbjct: 527 AGTGDAGWAQKLSAAASDPLVNRILAELAVEPIPSAK-EPDAAYVLQYVVRLLELLDQ-- 583 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R+ +++ ++ + A + E L + L + + + A Sbjct: 584 ---RRIADVKSRLQRSDAAADPEAYNRLFAQLAALEQHRRGLRNLVA 627 >gi|269960188|ref|ZP_06174563.1| DNA primase [Vibrio harveyi 1DA3] gi|269834995|gb|EEZ89079.1| DNA primase [Vibrio harveyi 1DA3] Length = 586 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + F+ F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFKSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ R I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------ILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ Q + L L+ + + Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFVDVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L + E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIP-LVEDNLEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|302528808|ref|ZP_07281150.1| DNA primase [Streptomyces sp. AA4] gi|302437703|gb|EFL09519.1| DNA primase [Streptomyces sp. AA4] Length = 637 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 142/655 (21%), Positives = 253/655 (38%), Gaps = 45/655 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ I ++G+YV R G CPFHDEKTPSF+ + G Sbjct: 4 RIRESDIAEVRERNRIDEVVGEYVALRRAG----GGSLKGLCPFHDEKTPSFNVRPTHGT 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD + F+ + SF+E+V+RLA G+ L + ++ LI Sbjct: 60 FHCFGCGEGGDVIKFIQKIDLVSFVEAVERLADRVGIRLTYEGGGASVQRDRGTRSRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L + +L ERG D+ A + F G+AP L +HL +GF Sbjct: 120 AHRAAAEFYVEQLGTDEARAARDFLTERGFDAAAAKQFGCGFAPGGWDKLTKHLLNRGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++I +GL +G DRF RL++PIR V+ FG R L + + KYLN+ Sbjct: 180 VKELIASGLSKEGQR--GPIDRFHRRLVWPIRDVGNDVVGFGARRLFDDDRISAKYLNTS 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K ++ A + K +++VEGY DV+++ AGV V+S Sbjct: 238 ETPIYKKSHVMFGLDQAKREIAK----------RHQVVVVEGYTDVMAMHAAGVPTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E +++L +L ++ FDGD+ G +AA KA + + Sbjct: 288 SGTAFGEDHMKVLRRLMMDDDAFRGEVIFTFDGDEAGQKAALKAFEGDQTFAG---QTYI 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ PL + + K + ++ D + Sbjct: 345 AVAPDGMDPCELRIAKGDAAVRDLVARRTPLFEFVIKSMLKQFDLDSVDGQVAALQKTVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW---------KKNARHRDQKG 461 + IKD+ R Y+ + + + + Q+ Sbjct: 405 MVAAIKDRASRDGYASKLAWWVGWQDVAQVVNRVRGAAGAAARRGPVEVQPRRSAARQEA 464 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P+ + L + + + + L + PAI +Y L + + + + Sbjct: 465 PAPEPEKQDLPRPAPNDPRFVGQREALKAALQQPAIAGPEYDSLPEEAFTHPVYVAVHLA 524 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + ++++ ++ L + +V Y Sbjct: 525 VLKAGGAASGLTGPALLDAASAHCPEGTVRRVLSELAVEPLR------ALGEVDSRYISG 578 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + + L+ RQ EI+ ++ +++ + L L + + Q A Sbjct: 579 VLAGVQENLVGRQIGEIKSKLQRLSPVEAPDDYRALFGDLVALEQYRKSLREQAA 633 >gi|119962293|ref|YP_947261.1| DNA primase [Arthrobacter aurescens TC1] gi|119949152|gb|ABM08063.1| DNA primase [Arthrobacter aurescens TC1] Length = 627 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 152/645 (23%), Positives = 255/645 (39%), Gaps = 38/645 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I ++ YV G + CPFHDE++PSF G Y Sbjct: 5 IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGSFKGLCPFHDERSPSFTVRPQVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C GD +SF+ + SF E+V++LAA G L D ++ + L+ Sbjct: 61 HCFGCGEDGDAISFVQKMDHSSFHEAVEKLAARIGYELRYEDGGTGPSREEVGKRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A +FF L +LD RG D A E F +GYAP L +HLR +GF+ Sbjct: 121 AHKIADEFFRAQLLTPGAAEGRNFLDGRGFDRSAAEHFGVGYAPQGWDGLLKHLRGRGFT 180 Query: 180 EEKIIEAGLLID--GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 + ++ G+ N YDRFR RLI+PIR G I FG R L + + KYLN+ Sbjct: 181 DAELKLTGMFSAGGPGNQQRIYDRFRGRLIWPIRDIAGDTIGFGARKLFEDDQGPKYLNT 240 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET L+ K + LY A + K +++VEGY DV++ AGV V+ Sbjct: 241 PETTLYKKSQVLYGIDLAKRNIAK----------ERQLVVVEGYTDVMACHLAGVATAVA 290 Query: 297 SLGTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 + GTA +++ + ++ FDGD G +AA +A + + Sbjct: 291 TCGTAFGTEHIKVARRLLSDDGSGGEVIFTFDGDAAGQKAALRAFEEDQRFQA---QTYV 347 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP + G +A LI PL + K + +T + R Sbjct: 348 AVEPSGADPCDLRQLKGDSAVRDLISSRKPLFEFAIKASLRRHNLDTVEGRVAALREAAP 407 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D R Y++ + L ++ G + + S Sbjct: 408 VVAQIRDSAARPGYTRELAGWLGMPIEEVSRFVGGAAKRAAAGGSGEQSTTATAPPSSSP 467 Query: 471 -LVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVE 528 + + E L + PA+L ++ + + + + Sbjct: 468 VFHRPDPRDPVAGMERQALEVALQDPAVLGGVSWERFEASHFATPAYSAVHAAI-RATGL 526 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 P +++ + E L+ L ++ L ++T EA R + L Sbjct: 527 AHAADPVAWVEQIR-QEVPEPLRSLVSELAVTPLPASTPEAMQRYCRDILARLFEL---- 581 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++R K + Q+ ++ A E+ L L ++ ++ + S Sbjct: 582 -QITRIKADKMGQLQRLDAGANPEEFQRLNRELMQLEMERRALRS 625 >gi|153813736|ref|ZP_01966404.1| hypothetical protein RUMOBE_04169 [Ruminococcus obeum ATCC 29174] gi|149830176|gb|EDM85269.1| hypothetical protein RUMOBE_04169 [Ruminococcus obeum ATCC 29174] Length = 599 Score = 386 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 159/611 (26%), Positives = 266/611 (43%), Gaps = 33/611 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I +++ QYV R+ + Y+ CPFH+EKTPSF K Sbjct: 3 MRYSDDIIEEVRQKNDIVDVVSQYVKLTRKGS-----SYFGLCPFHNEKTPSFSVTPGKQ 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF E+++ LA AGV LP ++ +K + + +L+ Sbjct: 58 MYYCFGCGAGGNVFNFIMEYENYSFGEALKHLADRAGVELPKIEYSREVREKAEQKAELL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++++ L+ ++ H YL R + + F LGY+ L ++L+ KG+ Sbjct: 118 EINKQAAQYYYYQLRTEGGRQGHEYLAGRQLSEETMRKFGLGYSDKFGSGLYKYLKSKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E++ E+GL YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 178 SDERLRESGLFNVD-ERHGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A +K ++IL EGYMDV+S+ QAG N V+SL Sbjct: 236 TKIFDKSRNLYGLNIARTTRKK------------YLILCEGYMDVISMHQAGFTNAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT LL + + ++L +D D+ G+RAA + I + G V L +D Sbjct: 284 GTALTSGHASLLKRYTQEVLLLYDSDEAGIRAALRGIPI---LREAGVNSRVVDLKPYKD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ + ++ P + + +KD+ Sbjct: 341 PDEFIKNMGAEAFEERLNQASDSFMFRVSIAESEFPMEEPQGQNRFFERCAEMLLELKDE 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +AI + + + + + + + S K K Sbjct: 401 LERNLYIEAIVKKYRGQYGVSTEDLRKRVNTLALKGTPAENR---IQPKSGSQNKKKKET 457 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L+ +P + + Q L + +++ LF E + P ++ Sbjct: 458 ASEQAQKLMLTWLVTYPNVFDKVAQYLTPEDFVVPLYREVAQMLFQQREEGQ-VNPAKLL 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSR 593 + + L +A + + ++LA R + Sbjct: 517 NSFTDSEEQREVASLFNATIHLENQQEQDQAFADTLLRIKSESLAERNRNWDPTDMAGLQ 576 Query: 594 QKEEIEKQIAQ 604 Q + +K+I + Sbjct: 577 QIVKAKKRIGR 587 >gi|148272767|ref|YP_001222328.1| DNA primase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830697|emb|CAN01637.1| DNA primase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 629 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 153/653 (23%), Positives = 260/653 (39%), Gaps = 49/653 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ + + +++G+YV G CPFHDE+TPSFH GFY Sbjct: 4 IRKSDIDEVRSRVNLGDVVGEYVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQVGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +FL + +F E+V+R+A G L D + + ++ L+ E Sbjct: 60 HCFGCGEGGDVYTFLQRMDHVTFAEAVERMAQRIGYQLHYEDGQAATDQGNRSRLLGANE 119 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +FF L + + +L ERG D A + F +G+AP S +L HL KG++E + Sbjct: 120 AAAEFFVEQLGSEAAEIGRTFLGERGFDQGAAQRFGVGFAPQSWDALSSHLTAKGYTEAE 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 ++ AGLL +YDRFR RL++PIR G + FG R L + + KYLN+PET + Sbjct: 180 LVTAGLLSQ--GDRGAYDRFRGRLVWPIRDLTGATVGFGARRLREDDKGPKYLNTPETPV 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HK LY A + + +++VEGY DV++ AGV V++ GT+ Sbjct: 238 YHKSSVLYGLDLAKRDVSR----------GRQVVVVEGYTDVMACHLAGVTTAVATCGTS 287 Query: 302 LTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++L ++ +V FD D G +AA +A + + Sbjct: 288 FGVDHIKVLRRVLGDDSGLGEVVFTFDPDAAGQKAAMRAFSEERRFAA---QTYVAVGPE 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DP G A ++I P+ + K+ + +T + R + I Sbjct: 345 GLDPCDLRLTRGDDAVRRMIQGKKPMFEFAIKQILADHDLDTVEGRVAALRAAAPVVADI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +D LR Y++ + L + GR + R P R Q Sbjct: 405 RDPSLRPGYARELAGWLGMDLTEVGRAVQTAGRSMPADGADRSGGSPQGRHAQGGHGPED 464 Query: 476 --------------LSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLWS 520 + + E L+ ++ HP ++ + A + + N L + Sbjct: 465 EGGDASRSMSLMDLPTDLATRLERDALMAMLQHPELVGNDLVMRAAQVTFVNESLAVVRD 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + F L+KQL + D Y + Sbjct: 525 GVIGSMDALGGADWLSRVALEVPESFATLVKQLG--------VAPLPNRGDADKLAVYVK 576 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + R L R+K ++ ++ + A + E+ + L +V + + Sbjct: 577 GVTAELVGRDLLRRKADLIGRLQRTDATHDRERYQEIQRELMQVEAERRALRE 629 >gi|225174151|ref|ZP_03728150.1| DNA primase [Dethiobacter alkaliphilus AHT 1] gi|225169936|gb|EEG78731.1| DNA primase [Dethiobacter alkaliphilus AHT 1] Length = 604 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 184/628 (29%), Positives = 292/628 (46%), Gaps = 46/628 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P +F+ ++ + LI +YV R N Y+ CPFH EKTPSF + K Sbjct: 4 NIPNEFVDEVRTRFDVVELISEYVQLKRSGRN-----YFGLCPFHGEKTPSFSVSQDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF C G+ SFL + G F E+V+ LA AG+ LP ++ E+ ++ L Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGIPFPEAVKELARRAGMQLPSTVSSVAAQRAEQKKSRLRE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A ++ + L++ + +YL++RG+ IE F LG+AP+ ++++ LR+K F+ Sbjct: 119 AMAWADKYYRYWLQHQDGAKALHYLEKRGLTREIIESFGLGFAPNRWEAVKQFLRKKDFT 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++++AGLL D N +YDRFRNR+ FPI S RG+ IAFGGR L KYLNSPET Sbjct: 179 ERELLDAGLLSD--NPKKTYDRFRNRITFPICSPRGETIAFGGRIL-DDGEPKYLNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KGKNLY A +++ I+ EGYMDV++ QAGV N V+SLG Sbjct: 236 PLFDKGKNLYAIHLAREAIRR----------EKQAIIFEGYMDVIAAHQAGVTNAVASLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q RLL + +V+ +D D G A ++ + + G V L G DP Sbjct: 286 TSLTEAQARLLRSQAEEVVIVYDADAAGQAATWRGLQI---LKSAGCLVKVGRLPAGMDP 342 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D +IR +G AF K +I E+L LVD + S + ++R L + + + + Sbjct: 343 DDYIRRHGGDAFRKDIIGEALLLVDYQMASLAQQYSLDKDEDRIRLFNKISEILASVDNA 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y L+ E + + + +R Q S + S + K Sbjct: 403 MEREDYVTKAAAMLKLPATAVREELN---KKKQSASRPHSQTRKSSTIKPSLQRETAAQK 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 P ++ P++++E +L + + +L E+ F + Sbjct: 460 APM----QIIALWGRFPSLIEESAGQLEEEDFP----AELIPAFLEAQKEKASFSAARLL 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + L +L E + ++ + L K R ++RQ++E+ Sbjct: 512 DSLQEEKHRQTLSRLL----------IHEEYDEKIAKKAIDDCIRLLKCVR-IARQRKEL 560 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626 E Q+A + + L E+ Sbjct: 561 EAQMASLDPVAAKGEINELSKKWLELRK 588 >gi|121534200|ref|ZP_01666025.1| DNA primase [Thermosinus carboxydivorans Nor1] gi|121307303|gb|EAX48220.1| DNA primase [Thermosinus carboxydivorans Nor1] Length = 606 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 293/631 (46%), Gaps = 38/631 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 DF+ + I ++I YV ++ N YW CCPFH EKTPSF KGF+YC Sbjct: 7 DDFVDRVRSECDIVSVISDYVPLKKKGRN-----YWGCCPFHHEKTPSFSVTPEKGFFYC 61 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122 F C G+ +FL + SF E+V++LAA +PLP + + + + L E Sbjct: 62 FGCQTGGNVFNFLMKIENISFFEAVKKLAARLNIPLPEREKSPAEIARERELASLYLANE 121 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A++FFH L K + YL RGI I FKLG+AP + L + L ++G SEE Sbjct: 122 YASEFFHACLTKTNMGRVAREYLASRGISDDIIRNFKLGFAPPAWDKLVQALTRRGLSEE 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++AGL++ YDRFRNR++FPIR +RG+V+ FGGR L S KYLNSP+T+L Sbjct: 182 LLLKAGLVLTRPRGDGIYDRFRNRVMFPIRDARGRVVGFGGRVL-DDSSPKYLNSPDTLL 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K LY A+ ++ S +I+VEGYMDV++ + G NVV+SLGTA Sbjct: 241 FNKRHLLYGLDAAIRSIK----------ESGQVIVVEGYMDVITAHRFGFTNVVASLGTA 290 Query: 302 LTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 T Q LL + +++ +D D G A ++A+ V G V V + G+DPD Sbjct: 291 FTPEQAGLLERCSVSQVLFAYDSDAAGQSATFRALATVR---ERGFNVKVVSIPEGKDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R +G AF +++ +++P VD ++ E+ ++T + + + + + + + Sbjct: 348 EFLRRHGPEAFARVVAQAMPFVDYQLQQALESIDYSTLEGKVAVVSKILPVLASVGNAVE 407 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + +L TE++ Y +KK+ + KG Sbjct: 408 VNGHIARLAQKLNIDESAIRTEYAKYIHQYKKDKIVNKGNNINSHHNFVKFAKG-PEAAT 466 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E L+ + + A++ +LA + ++ Q++ +F + P + Sbjct: 467 VAAERQLIRLMCDDGAVIPYVQVQLAVEDFSDSARQEIVRRIFMVNDAGEKLEPAALAMG 526 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E EL + + + DV + L R L E+ Sbjct: 527 LSETANAEL----------SHIMLIDEQCA--DVTKVVDDCLK-TIRLARLKALYEQHRL 573 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ G++ + ++ ++ +I ++ Sbjct: 574 KADELERMGDS-RFQEELAESKRINDEIKKL 603 >gi|38234270|ref|NP_940037.1| DNA primase [Corynebacterium diphtheriae NCTC 13129] gi|38200533|emb|CAE50228.1| DNA primase [Corynebacterium diphtheriae] Length = 632 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 130/646 (20%), Positives = 248/646 (38%), Gaps = 41/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF +EKTPSFH + G+ Sbjct: 6 RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 ++CFS GD SFL + +F E+V+ A G + + + + LI Sbjct: 62 FHCFSTGKGGDVFSFLMEMEQLTFPEAVEVCAEKIGYQINYQGGTTGARREEPGTRKRLI 121 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 VA F+ L+ +L +RG I F+ GYAP+ ++ + + +KGF Sbjct: 122 EANRVAHQFYRQQLETPEAAVARQFLLDRGFSQQHIYGFECGYAPEGWDTMTKFMLRKGF 181 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++ AGL DRF RL++PI+S G VI FG R L + KY+N+P Sbjct: 182 EFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + S ++VEGY DV+++ AG+ V++ Sbjct: 240 ETLLYKKSKVLFGLDLAKKSIA----------SQHQAVVVEGYTDVMAMHAAGITTAVAA 289 Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E L++L + ++ FDGD+ G +AA +A + + Sbjct: 290 CGTAFGEEHLQILRRYMLDDAYFAGSLIYTFDGDEAGQKAAMRAFEGDQKFSG---QSYV 346 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + ++ + R + Sbjct: 347 AVAPDGMDPCDLRLAKGDAAVRDLVAQRVPMFEFIIRTLISEYPLDSVEGRLQALRRAVP 406 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + I+D+ L+ Y++ + + ++ Q+ E ++ R Sbjct: 407 IVASIRDRALKTEYARLLAGWVGWPDPNEVLQQVRAEERRPKTQPRQRRATRIDSNSQPA 466 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++QS LV + + L + +P E + L D + + + + + Sbjct: 467 MIQSMLVMPDRKEPRLWPQREALKIALQYPEHAGEYFDSLPDDAFTHESYAAVRKAIVAA 526 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + + K L ++ + Sbjct: 527 GGCSDAIRGSTWLDAVRDNVYDMVGKSLVSELAVEHIILDEWGLAAH------TDTTLAR 580 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + Q +++ + ++ + + L + L + ++ Sbjct: 581 LMEQRIGNQIAQLKGAMQRMRPSEDMQAYNSLFADLVALEQTRREL 626 >gi|289434737|ref|YP_003464609.1| DNA primase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170981|emb|CBH27523.1| DNA primase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 626 Score = 385 bits (989), Expect = e-104, Method: Composition-based stats. Identities = 156/649 (24%), Positives = 290/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDHVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 ++CF C G+ SFL G +F+E+V+++A ++ + + + P+ K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVEAVKKVADMSHLDVEIELPEERDTAHLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGVAALTYLKERGMSEQMMATFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGTAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AA+KA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTSRAIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGADKFKEIYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + + + + + + +K + P Sbjct: 405 KLDQAVERELYLKQLAEEFELTIETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L + ++ ++ Q L++ Sbjct: 465 QEDTEMLYSFEQPTQKLSAHTTAEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + R ++ Sbjct: 525 YLIGYFAEGNEADPNKFMDSVGDVAMKGLISSLEMVIS-----------PEEQGRIQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + E ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELAGYNRDNDKENEIRVMLEIVQLNRQLN 621 >gi|226946706|ref|YP_002801779.1| DNA primase [Azotobacter vinelandii DJ] gi|226721633|gb|ACO80804.1| DNA primase [Azotobacter vinelandii DJ] Length = 638 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 200/657 (30%), Positives = 301/657 (45%), Gaps = 67/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +IG V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQGFIDDLLNRTDIVEVIGSRVQLKKTGRN-----YSACCPFHQEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120 YCF C G+ L FL F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFLMDHDHLEFPQAVEELARRAGLEVPREERGGPHQPRQSADSPLYPL 119 Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A D++ +LK+ +++ YL RG+ F LG+AP +L +HL Sbjct: 120 LATAADYYRQALKSHPARQVAVDYLKGRGLSGVIARDFALGFAPPGWDNLLKHLGGDALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +IEAGLLI+ + YDRFR+R+IFPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKAMIEAGLLIENAETGRRYDRFRDRVIFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARRHNRDL----------DEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L++L P ++ CFDGD G +AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRLVPSVLFCFDGDQAGRKAAWRALEATLPSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G+ AF L ++ PL D +++ TE T + +A L I I Sbjct: 349 DSLVRAEGREAFLARLEQQARPLADYFFRQLTEEADPGTLEGKAHLATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRD------------------RLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 LR Q + + R++ +++A R + Sbjct: 409 NLRALMRQRLAEITGLTGTSPNSPAASPVPRVEDAHYYQADPGYADLIEPERSAFGRTAQ 468 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREA--------ALLLTLINHPAILQEQYQELADIRYDN 512 Q +S KG+ P R A + L TL+ HP + Q+ + + Sbjct: 469 DKGQWKGRSGYRKGRDDFAPRPRTAVSVEPPNLSALRTLLQHPQLAQKVADA---SHFAS 525 Query: 513 NE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 E +L L + ++ R G LL+ L + W +T+ Sbjct: 526 EEDPYAQLLVALLEALQKNPRSSSLQLIARWHGTEQGRLLRALAEKE-----WLISTDNL 580 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 LA +R R + + + + E +A L ++ + Sbjct: 581 EQQFFDTIN-TLAARQRERGIEQLLRKARQ----------GELSAEEKIRLRDLLSR 626 >gi|170781949|ref|YP_001710281.1| DNA primase [Clavibacter michiganensis subsp. sepedonicus] gi|169156517|emb|CAQ01668.1| DNA primase [Clavibacter michiganensis subsp. sepedonicus] Length = 630 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 153/654 (23%), Positives = 261/654 (39%), Gaps = 50/654 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + + +++G+YV G CPFHDE+TPSFH GFY Sbjct: 4 IRKNDIDEVRSRVNLGDVVGEYVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQVGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +FL + +F E+V+R+A G L D + + ++ L+ E Sbjct: 60 HCFGCGEGGDVYTFLQHMDHVTFAEAVERMAQRIGYQLHYEDGQAATDQGNRSRLLGANE 119 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +FF L + + +L ERG D A + F +G+AP S +L HL+ KG++E + Sbjct: 120 AAAEFFVEQLGSEEAEIGRTFLGERGFDQGAAQRFGVGFAPQSWDALSSHLKAKGYAEAE 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 ++ AGLL +YDRFR RL++PIR G + FG R L + + KYLN+PET + Sbjct: 180 LVTAGLLSQ--GDRGAYDRFRGRLVWPIRDLTGATVGFGARRLREDDKGPKYLNTPETPV 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HK LY A + + +++VEGY DV++ AG+ V++ GT+ Sbjct: 238 YHKSSVLYGLDLAKRDVSR----------GRQVVVVEGYTDVMACHLAGITTAVATCGTS 287 Query: 302 LTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++L ++ +V FD D G +AA +A + + Sbjct: 288 FGVDHIKVLRRVLGDDSGLGEVVFTFDPDAAGQKAAMRAFSEERRFAA---QTYVAVGPE 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DP G A ++I P+ + K+ + T + R + I Sbjct: 345 GLDPCDLRLTRGDDAVRRMIQGKKPMFEFAIKQILADHDLETVEGRVAALRAAAPVVADI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +D LR Y++ + L + GR + R P R Q Sbjct: 405 RDPSLRPGYARELAGWLGMDLTEVGRAVQTAGRSMPADGADRSGGAPQGRHAQGGHGPDD 464 Query: 476 ---------------LSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLW 519 + + E L+ ++ HP ++ + A + + N L + Sbjct: 465 DGAGDASRSMSLMDLPTDLATRLERDALMAMLQHPELVGNDLVMRAAQVTFVNESLAVVR 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + F L+KQL + D Y Sbjct: 525 DGVIGSMDALGGADWLSRVALEVPESFATLVKQLG--------VAPLPNRGDADKLAVYV 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + R L R+K ++ ++ + A E E+ + L +V + + Sbjct: 577 KGVTAELVGRDLLRRKADLIGRLQRTDATHERERYQEIQRELMQVEAERRALRE 630 >gi|94498544|ref|ZP_01305099.1| DNA primase [Sphingomonas sp. SKA58] gi|94421987|gb|EAT07033.1| DNA primase [Sphingomonas sp. SKA58] Length = 625 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 201/651 (30%), Positives = 306/651 (47%), Gaps = 39/651 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ +L +S LIG+ + + +Y ACCPFH+EKTPSF ND KG Sbjct: 1 MTLTPQWLDELRARTSLSTLIGKSIKVQKAGR-----EYKACCPFHNEKTPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G F+E+V+ LAA AG+ +P DP+ K+ + L Sbjct: 56 FYHCFGCGAHGDAIRWMTDQRGLPFMEAVKELAATAGMEVPAADPRAAKRAEQAKGLHEA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A FF L YL RGI F GYAPD+R L+ LR G Sbjct: 116 MAAAQSFFEDQLGGLDGGEARAYLGRRGISDATRRAFGFGYAPDARGRLKTALRDFGEPM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGLLID + SYDRFR RL+ PIR RG+VIAFGGR L KYLNSP+T Sbjct: 176 --LVEAGLLIDPEGERDSYDRFRGRLMLPIRDIRGRVIAFGGRIL-GDGEPKYLNSPDTP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LYN A +++ R +I+VEGYMDV++L QAG + V+ LGT Sbjct: 233 LFDKGRTLYNIDKASPVSRQTGR----------VIVVEGYMDVIALAQAGFADAVAPLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE+Q+ LWK+ VLCFDGD G +AA +A L L PG+ + F L +G+DPD Sbjct: 283 ALTEHQIERLWKMVEVPVLCFDGDGAGQKAAIRAAMRALPLLRPGHSLCFATLPKGQDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ ++ PL++ LW E +TP+++A L+ L+ + I D + Sbjct: 343 DLIRAKGPAAMQAVLDDAQPLIERLWAHELSAAPLDTPEQKAALKQRLRAISDAIADPDV 402 Query: 421 RYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 R +Y+ A R+R LF G G + R P Sbjct: 403 RAHYAHAFRERYGALFFARREAAPFQPRAPGGGGAQRWQRDRRGNWKPPIPPAGQEARAI 462 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 A+L L+ HP + + L+ + + L +L + ++ Sbjct: 463 GAGGMEQRLLRAVLAALLRHPEQIAPHREMLSGLHIADPMLGQLMGAMIRCSFHKETVET 522 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E + L + + K + R L + + V + ++A+ + + Sbjct: 523 EGLLTILGQGDVYNMAKGMLR-ADTFTLTPSRMTTDPDRVARDLEEAVRVIAQGP----- 576 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVH-------IQIHQIESQEAMI 638 E+E + + T + E++ + + + ++ ++ E I Sbjct: 577 --ELEAALVEATRRFESDFSEANFAEQQRIRALKADHDRRLAELAQSEDSI 625 >gi|117619022|ref|YP_855377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560429|gb|ABK37377.1| DNA primase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 595 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 285/631 (45%), Gaps = 47/631 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL+ I LI V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CF C G+ + F+ G F ++++ LA++ G+ +P DL Sbjct: 59 YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASLHGMQVPREQTAGGASSSQPAVSKDLF 118 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ F+ +LKN + YL RG+ ++ F +GYAP +R Sbjct: 119 ELMNQIARFYESNLKN--APQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASRE 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E+ +I G+LI D+ SYDRFR+R++FPIR RG+VI FGGR L +G + KYLNSPE Sbjct: 177 HEQLLISGGMLITRDSGPGSYDRFRDRIMFPIRDKRGRVIGFGGRVLGEG-TPKYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ L+ + + R I++VEGYMDV++L Q + V++L Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYEIDYAVAAL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T + L++ + +V C+DGD+ G AA++A+D L HL G + FV L GED Sbjct: 286 GTATTSDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGED 345 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK FE L+ ++ P D +++R + + + + E+ I + + Sbjct: 346 PDSLVRQIGKEGFEALLDKAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + ++ K + K ++ + L Sbjct: 406 FTREGLITRLSSMMRWGENKQRIDELFARNSQPKAEVNKPKAAKLTPL------------ 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L ++ +PAI E ++ L L + Q + Sbjct: 454 ------RRALALMVQYPAITAELPAMPELAGLRLQGIRFLLQ-LHQQILTQPEVTTGILL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + GE+L QL + + +++ + + L+ L ++ EE+ Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEVKLDQEPDILGELQDTFVGFINLF-----LKQRIEEL 561 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++AQ +E+T L+ ++ EV I+ Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQIEKR 590 >gi|261325544|ref|ZP_05964741.1| DNA primase [Brucella neotomae 5K33] gi|261301524|gb|EEY05021.1| DNA primase [Brucella neotomae 5K33] Length = 478 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 217/458 (47%), Positives = 296/458 (64%), Gaps = 5/458 (1%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ ++ +PIS LIG V +DR+K+N KGD+WACCPFH EKTPSFHC D KG Sbjct: 1 MRFPPSFLDEIRDRVPISTLIGTRVSFDRKKSNPPKGDFWACCPFHGEKTPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+R+A +AGVP+P DP++EK E + L + Sbjct: 61 RYHCFGCGVTGDHFKFLTDLEGLSFPEAVERVADMAGVPMPARDPEMEKCEAQRATLYDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L++A + YL +RG+ + + F++GYAP+SR +L+E L KG S Sbjct: 121 MELAAQFFESQLQSATGAKARAYLRDRGLSTATQQAFRMGYAPESRNALKEFLAGKGVSR 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+I GL++ G+ A SYDRFR+R++FPI RG++IAFGGR LS KYLNSPET Sbjct: 181 EQIEACGLVVHGEGIAVSYDRFRDRVMFPIEDLRGRIIAFGGRALSADAPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LYN A Q + II VEGYMDV++L QAG+ +VV+ LGT Sbjct: 241 LFHKGRVLYNGLRARKACQPQG-----GEPAKPIIAVEGYMDVIALAQAGIHHVVAPLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LLW++SP +LCFDGD GLRAAY+A DL L L PG + F LL G+DPD Sbjct: 296 ALTEEQLELLWRISPEPILCFDGDGAGLRAAYRAADLGLPVLQPGKSLRFALLPEGQDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G +AF ++ ++ PLV+M+W RET F+TP+ RAELE L+ + I ++ + Sbjct: 356 DLVKAEGPSAFHAVLRDARPLVEMVWTRETAGGVFDTPERRAELEARLREITSRIANEDI 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 R +YSQ +R+R Q F + G+ + R + Sbjct: 416 RRHYSQDMRERAQAFFGQGRQGFQNGGQRSQSFTRRNE 453 >gi|254852081|ref|ZP_05241429.1| DNA primase [Listeria monocytogenes FSL R2-503] gi|300765598|ref|ZP_07075577.1| DNA primase [Listeria monocytogenes FSL N1-017] gi|258605379|gb|EEW17987.1| DNA primase [Listeria monocytogenes FSL R2-503] gi|300513699|gb|EFK40767.1| DNA primase [Listeria monocytogenes FSL N1-017] gi|328465498|gb|EGF36727.1| DNA primase [Listeria monocytogenes 1816] Length = 626 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 156/649 (24%), Positives = 289/649 (44%), Gaps = 51/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + + + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMP 464 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ Q L D + ++ + L++ Sbjct: 465 QEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYT 524 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + L+ L+ + + ++ Sbjct: 525 YLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS-----------PDEQGKTQFED 573 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KRF+ L ++K+E+E+++A + + + + ++ + +++ Q++ Sbjct: 574 YIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 621 >gi|311031649|ref|ZP_07709739.1| DNA primase [Bacillus sp. m3-13] Length = 604 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 155/634 (24%), Positives = 288/634 (45%), Gaps = 38/634 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I ++I +YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPEQTIDQIRQSTDIVDVISEYVQLKKQGRN-----YFGLCPFHGESTPSFSVSQEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 Y+CF C G +F+ + G SF+E+ Q+LA + V + + + K ++ Sbjct: 59 YHCFGCGAGGSAFNFIMEIEGVSFVEAAQKLAKSSNVEVEVPEYTATEQTGQSKETKWMM 118 Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + F+HH L + + Y+ RG ++ F +GYA +S + L ++G Sbjct: 119 DAHLLLHKFYHHLLLNTKEGQEAYDYVTGRGFTDETLKKFGVGYALNSWDFALKFLTKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++++ + +AGLLI+ +++A +DRFRNR++FPI +G VIAF GR L +GE KYLNSP Sbjct: 179 YNQQLLEKAGLLIEKEHTAEYFDRFRNRIMFPIHDHKGNVIAFSGRVLGEGEP-KYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF+K K LYNF A +++K +IL EG+ DV++ AG+ N +++ Sbjct: 238 ETPLFNKSKILYNFHQARPHIRKQ----------EQVILFEGFADVIAADGAGLPNGIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE Q R++ + + +C+DGD+ G+ AAY+A ++ + G V ++ Sbjct: 288 MGTSLTEDQARIIRRHVENVTICYDGDNAGIEAAYRAANI---LIQQGCYVRIAMMPDKM 344 Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G +F + +I SL + + + R+ ER + I+ + Sbjct: 345 DPDDYIRSKGSDSFKQDVIGASLTFMAFKLRYLRKGRNMKDEGERMRYVEDVLKEISMLT 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R +Y + + D + + + + +Q + + L Sbjct: 405 KAVERDHYLRQLADEFSISLDALKQQQFQVYKSLMQKKDYNEQNRINIPNKPKIFTQA-L 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + ++ + + E + + ++L++ + E Sbjct: 464 KPAYLNAERYLLAHMLKDRTVSEKVQASIEG-SFIIEEHRAIATYLYAFYEEGYEPNISI 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 +R+ E+ +++ +L G+ + E + + +Q K + Sbjct: 523 FMERIPEQSLKKIISEL-------GMLTLEEELSDAVLHDYMKQVFNYPKLLT-----IK 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 E E+ Q A+ + A + + ++ ++ Q Sbjct: 571 EKEQDKKQAEAQNDYLGAAQIAMEIIQMKKELKQ 604 >gi|114771659|ref|ZP_01449063.1| DNA primase [alpha proteobacterium HTCC2255] gi|114547731|gb|EAU50621.1| DNA primase [alpha proteobacterium HTCC2255] Length = 656 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 206/622 (33%), Positives = 326/622 (52%), Gaps = 16/622 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+++L +S ++G+ V W+++KTN KGDYWA CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLEELRNRSSLSQVVGRKVTWEQKKTNIAKGDYWAPCPFHSEKTASFHVDDKKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SF+ SFIE+V+ LA AG+ +P DPK ++K I +L + Sbjct: 61 FYYCFGCHEKGDAISFIRNSENVSFIEAVEILAREAGLTMPARDPKAQEKIDINKELASI 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ + K Y+ RG+ + I F++G+AP R SL + L KG E Sbjct: 121 MENAVQFYKMQFNGSNAKNAKDYIKSRGLTADIINTFEIGFAPGDRTSLSQFLLNKGIKE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 KII+AGL I D+ +DRFR R++FPIR+++G+ IAFGGR + KYLNS ET Sbjct: 181 NKIIDAGLAIKPDDGGNIFDRFRGRIMFPIRNTQGRCIAFGGRAMDPNARAKYLNSNETA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K ++ +I+ EGYMDV++L Q G ++ V+ LGT Sbjct: 241 LFDKGRSLYNHAPAREASGK----------ANSLIVAEGYMDVIALSQFGFKHAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL L+W++ ++ DGD GLRAA + IDL L L G + F +L G+DPD Sbjct: 291 AITENQLALIWRIHHEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFCILPLGQDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G T ++L+ S+ +V++LW+RETE ++F++P+ RA L+ L+ + I+D+ + Sbjct: 351 DILKDKGATFLQELLDNSVSMVNLLWQRETEGKNFDSPERRALLDKSLRAAVLTIRDKSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----SQRLMQSSLVKGKL 476 R++Y QAI++ QLF + + + K P S S L Sbjct: 411 RHHYGQAIKELRYQLFSPINNNMNLANKSKSYGSSQSWGKKPKLLASPNTKSSMLAMQSD 470 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS--DFVEQKYFLP 534 LRE+ +L++ I + + + L +L ++ + + + + Sbjct: 471 ETNWRLRESLILVSAIKNQSAALKNESALERCPITTPDLVEIMNAVLINLHVKKTDAGIK 530 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L +L + + V Q ++ LA + + Sbjct: 531 DNFAINIQNSLGYSPLDKLMKLKPIKNHPYLKKNSPPDLVEQTLEEELAKHVALIGAFNE 590 Query: 595 KEEIEKQIAQVTAKGEAEKTAI 616 +E E+ + + +G + Sbjct: 591 IKEAEQDLTGLVDEGLTWRLQQ 612 >gi|260767411|ref|ZP_05876348.1| DNA primase [Vibrio furnissii CIP 102972] gi|260617523|gb|EEX42705.1| DNA primase [Vibrio furnissii CIP 102972] Length = 581 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 63/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--------EKKEKIQ 114 +CF C V G+ + F+ F E+++ LA+ G+ +P + + + Sbjct: 60 HCFGCGVHGNAIDFMMEYERLEFPEAIEELASFLGLDVPREERSNGGFNKNTPRANSEEK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L L+ F+ LK + ++ YL RG+ ++ F +GY D +R++ Sbjct: 120 RNLYDLMGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q +++ ++ G+LI+ DN YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 180 QSRHNQDMLVSGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + L + I++VEGYMDV++L Q G+ Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGIDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T L+LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS++R YGK AFE+ + E+ PL L+ + + +A LE IN Sbjct: 348 DGEDPDSYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNVGNNEGKAALEAMALPLINK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D+ L+ + + + +G + + + + P + + ++ + Sbjct: 408 IPDESLQDQLLKILEQK------------TGIYKKPSLPSDAKSRPQPHKEIKRTPM--- 452 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ L+ +P+ + L L + + + + Sbjct: 453 ----------REVIALLLQNPSYADMVPDLTSVKGLAIPGL-SLLVEVLENCRQYPHIST 501 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + LL +L + E + + + Q + +Q Sbjct: 502 GQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQ 551 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + + AE+ L++++ E+ Sbjct: 552 IENLQAK--ERSVGLSAEEKRELVALMLELKA 581 >gi|77461369|ref|YP_350876.1| DNA primase [Pseudomonas fluorescens Pf0-1] gi|77385372|gb|ABA76885.1| DNA primase [Pseudomonas fluorescens Pf0-1] Length = 655 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 186/672 (27%), Positives = 294/672 (43%), Gaps = 80/672 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L FL F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFLMDHDNLDFPQAVEDLAKAAGMEVPRDEGGRSNKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A DF+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLSSDTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +IEAGLLI+ + YDRFR+R++FPIR +RG++IAFGGR L + KYLNSPET Sbjct: 180 QKAMIEAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ IR G AF + + PL D +++ TE + + +A + I+ + Sbjct: 349 DTLIRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------------------NARHRDQK 460 LR Q + + + + ++ +D Sbjct: 409 NLRILMRQRLTEITGLSSESVSQLAQSAPQEAPPAYDPGIDYDAMPDYSDYHQSQAQDMY 468 Query: 461 GPSQRLMQSSL----------------------VKGKLSKKPSLRE---AALLLTLINHP 495 P Q + + + P+ E A L TL++HP Sbjct: 469 VPQQEWTPKKSGAGGKKWDKKPWDKNGKRGGDRDQPRAPRVPAAVEPPTLAALRTLLHHP 528 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + ++ +N +L L + ++ R G LLK L Sbjct: 529 QLAEKVEDA-GHFADENQTNAQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAE 587 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + W + +L+ +R R L + + + +E +A Sbjct: 588 KE-----WLIDGDNLEQQFFDTIT-SLSARQRERNLEQLLRKARQ----------SELSA 631 Query: 616 ILISILHEVHIQ 627 + L ++ + Sbjct: 632 EEKNQLRDLLSR 643 >gi|134098092|ref|YP_001103753.1| DNA primase [Saccharopolyspora erythraea NRRL 2338] gi|291007449|ref|ZP_06565422.1| DNA primase [Saccharopolyspora erythraea NRRL 2338] gi|133910715|emb|CAM00828.1| DNA primase (bacterial type) [Saccharopolyspora erythraea NRRL 2338] Length = 630 Score = 385 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 140/636 (22%), Positives = 248/636 (38%), Gaps = 37/636 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ I +++G+YV NA G CPFHDEKTPSF+ G Sbjct: 4 RIRESDIAEVRERNRIDDVVGEYVAL----RNAGGGALKGLCPFHDEKTPSFNVRPGHGT 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++FL F+ESV+RLA G+ L K +T ++ Sbjct: 60 FHCFGCGEGGDVIAFLMKSEHLGFVESVERLADRVGIQLQYEGGVAPSKRDRGTRTRMVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F+ L++ + YL RG D A F G+AP L + L KGF Sbjct: 120 AHRIAAEFYAEQLRSPEAQPAREYLARRGFDEAAATKFGCGFAPGGWDKLTKLLLGKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ + GL + DRF RL++P++ G V+ FG R + + + KY+N+ Sbjct: 180 LDELYKCGLAKE--GRRGPIDRFHRRLLWPLKDLGGDVVGFGARRIFDDDPIEAKYVNTS 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 T LF+K + L+ A + K ++VEGY DV+++ AGV ++S Sbjct: 238 ATPLFNKSQVLFGIDLAKREIAK----------RRQAVVVEGYTDVMAMHLAGVPTAIAS 287 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + + +L +L ++ FDGD+ G +AA KA + Sbjct: 288 CGTAFGDEHISVLRRLMMDNDRFSGEVIFTFDGDEAGQKAALKAFEGDQQFTT---HTYI 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G TA + ++ L + + + + ++ D R Sbjct: 345 AITPDGMDPCELREARGDTAVKDVVARRRELFEFAIRSKLKGFDLDSVDGRVAALQETVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKY-ITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + IKD + R ++ + + + R R +G ++ Sbjct: 405 LVARIKDVERRDGFAAKLAWWAGWTDENQVVRRVREAAGTAPAKPRRRAPRGQEPLGIEV 464 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 L K P E L + PA+ Y L + + +L + + Sbjct: 465 DLPKRPPRHDPRWLERETLKAALQVPALAGPLYDSLPEEAFTEPAYAELHRAVLAAGGTS 524 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + + L + L T + + Y + + Sbjct: 525 SGLAGVALVDAVGRHCESSVTRSLLTE-----LAVETPDTKSEE-DPRYVGGVIARLQEC 578 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 L+SRQ +I+ ++ +++ + ++ L L + Sbjct: 579 LVSRQIADIKSRVQRMSPLEDPDEYNALFGDLVALE 614 >gi|229592967|ref|YP_002875086.1| DNA primase [Pseudomonas fluorescens SBW25] gi|229364833|emb|CAY52871.1| DNA primase [Pseudomonas fluorescens SBW25] Length = 656 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 185/671 (27%), Positives = 297/671 (44%), Gaps = 77/671 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L FL F ++++ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFLMDHDNLDFPQAIEDLAKAAGMEIPREESGRPHKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A DF+ +LK+ + K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLL++ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKAMIDAGLLVENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + + PL D +++ TE + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDR-------------------------------------LQQLFQKYIT 441 LR Q + + Q + Y Sbjct: 409 NLRTLMRQRLLEITGLSGEAVSQLAHSAPQDAPPAYDPGMDYDAMPDYSDFHQPQEAYTP 468 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA---ALLLTLINHPAIL 498 + + + + D+K S+ + + + P EA L TLI+HP + Sbjct: 469 QQAWAPKKPGAGGKKWDKKPWSKNGKRGDNDEAYAPRTPVAVEAPTLIALRTLIHHPQLA 528 Query: 499 QEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 ++ + + N N ++ L + ++ R G LLK L + Sbjct: 529 EKVE---SADHFANASNTYAQVLIALIEAVQKNPKLNSIQLMARWHGTEQGRLLKALAEK 585 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 W + + L+ + + L + + AE+ Sbjct: 586 E-----WLIDGDNLEQQFLDTITR-LSAGQHTQTLDELIKRARQ------PDLSAEEKIQ 633 Query: 617 LISILHEVHIQ 627 + + ++ Q Sbjct: 634 IAKQMRDLLKQ 644 >gi|297584636|ref|YP_003700416.1| DNA primase [Bacillus selenitireducens MLS10] gi|297143093|gb|ADH99850.1| DNA primase [Bacillus selenitireducens MLS10] Length = 604 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 161/630 (25%), Positives = 283/630 (44%), Gaps = 35/630 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I+++ + I ++I ++V ++ + CPFH+E +PSF + K Sbjct: 4 RIPEDIIEEVRKNSDIVDVISEHVQLKKQGKG-----FVGLCPFHNENSPSFSISPDKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 Y+CF C G+ SF L G SF+ESVQ+LA + + LP V D + +++ + Sbjct: 59 YHCFGCGAGGNVFSFFQELEGLSFVESVQKLAERSRIELPDHVADIQGKRENESHAAFYD 118 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+A +FHH L ++ K YL +RG AI+ +++GYAPDS L L ++GF Sbjct: 119 AHELAAKYFHHVLVQSEEGKPAREYLRKRGFTQAAIDQYQVGYAPDSWDFLSGFLEKRGF 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S + + GL+ ++ YDRFR+R++FPI +++G+ +AFGGR L KYLNS E Sbjct: 179 SMDDMASCGLVGRRESDGKPYDRFRDRIMFPIWNAQGKHVAFGGRGL-GDSQPKYLNSHE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F+K LY F A ++K + +L EGY+DV++ +AG+ N ++SL Sbjct: 238 SEIFNKSVTLYGFHLARPRIKK----------RNEAVLFEGYVDVIAAWRAGIDNGIASL 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA+T+ Q +++ + + R++LC+DGD G +A YK + + G V+ L G D Sbjct: 288 GTAMTDQQAKMIRRNADRVLLCYDGDGAGQQATYKNARI---LMAAGLSVSVANLPEGYD 344 Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +IR +GK F ++I + L++ R ER L I Sbjct: 345 PDDYIREFGKDRFVSEVIDNRKSWMAFLFQFFETGRDLTLEHERVAYIEDLLQETAGIDG 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + +R E + +K + ++ +++ + + K+ Sbjct: 405 PVERDMYLHKLAERFNLSVDILREELTRIRSNQRKKEHKQVKEAIFKQVDKRA---KKMM 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + +E+ + Q + + L+ + E P Sbjct: 462 SAEENAERRLIAHMMYSKDVAMQVEEEIGA-SFQFEIYQAIAAHLYGYYAEGFQPEPALF 520 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +R+ + +L + V Y Q + R + K+E Sbjct: 521 LERIHDADVRNTAAELS--------MKQLEDDVSEQVLADYIQVIKNASRLHEVEELKKE 572 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++ I AE L + + + Sbjct: 573 QQQAIDNRDHLAAAEIGMKLNRLYRSLKYR 602 >gi|39998180|ref|NP_954131.1| DNA primase [Geobacter sulfurreducens PCA] gi|39985126|gb|AAR36481.1| DNA primase [Geobacter sulfurreducens PCA] gi|298507118|gb|ADI85841.1| DNA primase [Geobacter sulfurreducens KN400] Length = 587 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 160/635 (25%), Positives = 276/635 (43%), Gaps = 53/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P D I+++ PI ++ YV + N Y CPFH EKTPSF+ N ++ Sbjct: 1 MSNIPDDKIREIRERAPILEVVSDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPAR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117 G ++CF C V G+ ++F+ + G SF E+V+ L GV + ++++ + +L Sbjct: 56 GIFHCFGCGVGGNAITFVMKMEGLSFPEAVKFLGKRVGVEIEDRPVTAAEKRRQDEREEL 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++A + +L +N YL+ RG+D E ++LG+APD L HL+ + Sbjct: 116 YGIMDLAARLYREALERNEEAGAARRYLETRGVDRETSEAYRLGFAPDRWDYLSRHLQHR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 S + GL + +D FRNRL+F I G+ I FGGR L KY+NS Sbjct: 176 KVSMDLAERLGL-VRRREGGGYFDIFRNRLLFAITDIHGRTIGFGGRVL-DDSLPKYINS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK L+ A L+ I+VEGY D L+L QAGV+NVV+ Sbjct: 234 PESPIYHKSDVLFGVHLAKGALR----------EQGSAIIVEGYFDHLALYQAGVRNVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTALTE ++LL + + + FD D G +A +AIDL L + V L++G Sbjct: 284 TCGTALTEGHVKLLRRYAGKAYTLFDADSAGRKATVRAIDL---FLAENFPAHVVELTQG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF++ G F + ++ P D L++ T + + ++ L + + Sbjct: 341 EDPDSFVKKEGADIFRTRLAKARPAFDFLFRDLLGQVDAGTVEGKLKVANELAPRLAKLA 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + R Y + I L + + G + P R +G Sbjct: 401 NPIERELYVKEIARVLGIDVRSLLRASGGAA---------GSRPDPLPRPTAERRPRGAG 451 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL + + + A + EL + + + E Sbjct: 452 P------EEMLLALMARSAEVADRVRRGEAAGLFR-PELAPVADAILERHSRRVEIDWGE 504 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + EL+ + + R A VDV + + Q +R L ++ + Sbjct: 505 LL---------ELVASPEEKGRIAAFLVNDDHLADVDVHKAFDQCRQALERGSL--KRLK 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ +++A + + + L++ + + + Q+ Sbjct: 554 DLARELAAADS--DTPRYRELLAEIEALRNRKSQL 586 >gi|262275020|ref|ZP_06052831.1| DNA primase [Grimontia hollisae CIP 101886] gi|262221583|gb|EEY72897.1| DNA primase [Grimontia hollisae CIP 101886] Length = 583 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 160/622 (25%), Positives = 282/622 (45%), Gaps = 53/622 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL + I LI V ++ N Y ACCPFH+EKTPSF + K F Sbjct: 4 KIPRSFIDDLLARLDIVELIDARVKLKKQGKN-----YGACCPFHNEKTPSFSVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-----EKIQTD 116 Y+CF C G+ + F+ F+E+++ LA+ G+ +P K + D Sbjct: 59 YHCFGCGAHGNAIDFVMEYDRLEFVEAIEELASTLGLDVPREQSGGAPKGPYARSDQKRD 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L +++ F+ L++ K YL RG+ ++ F +GY D +R + Sbjct: 119 LYQMMGQIAQFYQSGLRSDAGKTAIDYLKGRGLSGEIVKKFGIGYVADEWDQVRSRFGRD 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 S++ ++ G+LI+ DN YDRFR R++FPIR RG+VI FGGR L + KYLNS Sbjct: 179 NTSQQALVSTGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG+ LY + L + +++VEGYMDV++L Q G+ V+ Sbjct: 237 PETPIFHKGRELYGLYEVLQAHR----------EPKQLLVVEGYMDVVALAQFGIDYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T ++ L++ + ++ C+DGD G AA++A++ L HL+ G ++ F+ L G Sbjct: 287 SLGTSTTAEHIQTLFRQTSNVICCYDGDRAGRDAAWRAMEQALPHLVDGRQLKFMFLPDG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDS +R GK FE+ + ++ L + L+ E ++ + +A+L I+ + Sbjct: 347 EDPDSMVRKEGKDGFEQRLASAMSLSEFLFNTLMEQVDTSSQEGKAKLTTLAVPLIDKVP 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR Y + +L ++ + + + + P + ++ + Sbjct: 407 GGTLRLYLRNMLGQKLGLPDEQQLEKLISRQGQAQ-------TRKPLPEIKRTPM----- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P ++ + L L++ + + + Sbjct: 455 --------REVITLLLQNPGFVENVPPLEGVEELEIPGLN-LFTSMLELCRSRPNITTGQ 505 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + LL +L +A + + + + Q + +Q Sbjct: 506 LLEYWRGTDQEALLAKLASWELPINENNAL-DIFLDSLDKILDQCV---------KQQIA 555 Query: 597 EIEKQIAQVTAKGEAEKTAILI 618 +++ + V E ++ L+ Sbjct: 556 KLQAKSNTVGLSVEEKRELQLL 577 >gi|323495835|ref|ZP_08100903.1| DNA primase [Vibrio sinaloensis DSM 21326] gi|323319051|gb|EGA71994.1| DNA primase [Vibrio sinaloensis DSM 21326] Length = 585 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 174/634 (27%), Positives = 291/634 (45%), Gaps = 63/634 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C G+ + FL F+E+++ LA+ G+ +P + + + Sbjct: 60 HCFGCGAHGNAIDFLMEYERLEFVEAIEELASFLGLDVPREQRQGGGFQSNQPQASSAQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ F+ LK + K YL ERG+ ++ F +GY D +R++ Sbjct: 120 RSLYDLMGSIAQFYRDQLKQSSSKVAIEYLKERGLSGEIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q+ ++E ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR + + KYL Sbjct: 180 QQQQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + ++ + I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAYREPAK----------ILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412 GEDPDS++R YGK AFE+ I ++ PL L+ E N + + ++ L H I Sbjct: 348 DGEDPDSYVRKYGKAAFEEQIEKATPLSSYLFDNLIEIHQLNLGSNEGKSALRAHASALI 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 N I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 NKIPDP-----YFQELLEKL-------LDERTGFDNRLRQTRKKSAETRPQPHKEIKRTP 455 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 ++ LI +P+ Q + L L+ + Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVRELTVPGL-SLFVEVLEYCHMHPNV 503 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + LL +L + + + + Q + Sbjct: 504 TTGQLIEHWRNSSHEALLSRLAGWEIPVED-DNEQDIFLDSLDKILAQCV---------E 553 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + + + E+ L++++ ++ Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585 >gi|289627701|ref|ZP_06460655.1| DNA primase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330868478|gb|EGH03187.1| DNA primase [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 651 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 295/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-SDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEQLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|315282350|ref|ZP_07870779.1| DNA primase [Listeria marthii FSL S4-120] gi|313614011|gb|EFR87726.1| DNA primase [Listeria marthii FSL S4-120] Length = 627 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 158/650 (24%), Positives = 292/650 (44%), Gaps = 52/650 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVSIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGAAALTYLKERGMSEQMMTTFQIGFAPNHHATITSFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGLAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPIFNKRRTLFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F+++ + + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGAEKFKEIYKQQRMTWTAFKIHYLRKERNLQNETDQIAYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------- 462 + R Y + + D + + + + +K+ + P Sbjct: 405 KLDQAVERELYLKQLSDEFELTIETLKQQLQQSLKNSQKSQQMASYNEPPIDDSFMGMMP 464 Query: 463 ---SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ L + ++ E L+ ++ Q L D + ++ + L+ Sbjct: 465 QEDTEMLFSFEQPTQQKLSAHTISEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYEALY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 ++L F E P + + + L+ L+ + + ++ Sbjct: 525 TYLIGYFAEGNDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFE 573 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KR++ L ++K+E+E+++A + + E ++ + +++ Q++ Sbjct: 574 DYIRSLKRYK-LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 622 >gi|170723971|ref|YP_001751659.1| DNA primase [Pseudomonas putida W619] gi|169761974|gb|ACA75290.1| DNA primase [Pseudomonas putida W619] Length = 660 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 178/673 (26%), Positives = 296/673 (43%), Gaps = 85/673 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREEGRRGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L++ K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSALQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + + PL D +++ + + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQL------------------------------------------- 435 LR +++ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPAANSVPDYDPGYDYDAMASYTPDYGDMPQHD 468 Query: 436 -----FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++ + G G+ + + + Q + A L T Sbjct: 469 YAPAQQEQQWKPNKGGGKKPWSDKPWDKNRKAGKPWQQRDEAPPRTPAPVEPPTLAALRT 528 Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L++HP + + + + E +L L + ++ R G Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LL+ L + W + +L+ +R R L + + ++ Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEHLLRKARQ------SE 633 Query: 609 GEAEKTAILISIL 621 +E+ + L+++L Sbjct: 634 LSSEEKSQLLALL 646 >gi|289705781|ref|ZP_06502164.1| DNA primase [Micrococcus luteus SK58] gi|289557497|gb|EFD50805.1| DNA primase [Micrococcus luteus SK58] Length = 636 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 166/657 (25%), Positives = 270/657 (41%), Gaps = 53/657 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I + + ++ ++V G + CPFHDE+TPSFH G Y Sbjct: 5 IVRKDIDLVRERTDLKAVVEEFVTLRSAG----VGSFKGLCPFHDERTPSFHVRPGVGTY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C GD +SFL L +F+E+V+RLA+ GV L D + + + L Sbjct: 61 HCFGCGAHGDVISFLMELEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +FF +L + + +L +RG F LGYAP L +HLRQ+GF Sbjct: 121 ANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAAQFGLGYAPQGWSHLLDHLRQRGFR 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +E++ +GL+ +G YDRFR RL++PIR G I FG R L + KYLN+PE Sbjct: 181 DEELRASGLVSEGQR--GLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K ++LVEGY DV++ AGV V++ Sbjct: 239 TPLYKKSQVLYGIDLAKRTIAK----------ERQLVLVEGYTDVMAAHLAGVGTAVATC 288 Query: 299 GTALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ +L ++ FDGD+ G +AA KA D L + + Sbjct: 289 GTAFGADHIKVARRLISDDGTGGEVIFTFDGDEAGQKAALKAFDEDHRFLA---KTFVAV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A LI PL + + ++ NT + RA H + Sbjct: 346 EPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKDYDLNTVEGRAGALRHAAPIV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465 IKD LR Y + + L + GR ++ + P+ Sbjct: 406 AGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRAPRRGPEPEARPTPASDGQAVGPQ 465 Query: 466 --------LMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQ 516 +V + RE L ++ HP +L EQ+ L R+ + Sbjct: 466 GRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYA 525 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + QR + + +++ V + + DV + Sbjct: 526 AVHQGVKVAGSAGATP------QRWVDAVRDAVPQEVAGVVSELAVRDL-PARTPEDVDR 578 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + +++ R KEE+ ++ ++ +G+ + L S L E+ + + + Sbjct: 579 YCRDIMNRLFALQIVHR-KEELLGRLQRLGPEGDPAEFTRLNSELMELEARRRALRA 634 >gi|167630064|ref|YP_001680563.1| DNA primase [Heliobacterium modesticaldum Ice1] gi|167592804|gb|ABZ84552.1| DNA primase [Heliobacterium modesticaldum Ice1] Length = 656 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 162/682 (23%), Positives = 283/682 (41%), Gaps = 72/682 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ + I ++ YV R+ G Y CPFH EKTPSF + K Sbjct: 1 MR-DPQIVDEIRHRLDIVEIVADYVALKRQG-----GRYVGLCPFHSEKTPSFTVSRDKQ 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 +++CF C GD +F+ +F E++++LA AGV LP P + + Sbjct: 55 YFHCFGCGTGGDVFTFVMLRENLTFPEALKKLAERAGVTLPERKLTPTQQAQRTAVERGR 114 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L + A + + L+ R + YL RG+ F LG+AP L L+Q+G Sbjct: 115 ALHKRAAELYFRCLREDARARPGREYLSRRGVSDSVAVDFGLGFAPPGWEFLATRLQQEG 174 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + E++ GL++ YDRFRNR+IFPI ++G+ +AFGGR L KYLNSP Sbjct: 175 YLPEELERFGLIVPRQGGEGYYDRFRNRIIFPIFDAQGRPVAFGGRVL-DDAVPKYLNSP 233 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ KG++LY A + ++ +LVEGYMDV++ Q G++ V+S Sbjct: 234 ETPLYKKGQHLYGLNKAGSAIR----------EKGVAVLVEGYMDVIACHQHGIRQAVAS 283 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA+T Q RLL + PR+++C+D D G+ AA KA ++ G ++ + L G+ Sbjct: 284 LGTAMTPEQGRLLLRYGPRVLICYDSDRAGVEAAVKAGGILTAL---GAQIQVLTLPEGK 340 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ +G +F ++ + R + ++ +A + L + + + Sbjct: 341 DPDEYLQRHGADSFWLAAEQAPSFFTFCYSRAAAAQDLSSAVGKASVVRELASLLLTMPS 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------- 470 + Q + L+ + E GY R + ++ + + Sbjct: 401 AVEQEANIQWLARELRLSEAAVMEEIRGYARNARAPGMRKENIRHTISASAPAWGDGDAG 460 Query: 471 ----------------------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-AD 507 + + + LL +I P ++ ++ L + Sbjct: 461 TQAAPGDAGAADGLTARSAGGGEQRQHSANRKEQAWRYLLYWMIEDPDRVRWVFERLGEE 520 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + L ++ + L + E + +RL L L Sbjct: 521 IPRADEPLGEILAALTAVCDEGGRGSLAGRVAERLSTDKAKGYLSALL------------ 568 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + R+ + R+ L+ + +E Q+ + G+ E L+ L Sbjct: 569 --VEDILCREPVIEDCINTLRYGWLTEEIASLESQVDAFSRSGDMEAMQRLLPRL----A 622 Query: 627 QIHQIESQEAMIEGFGKMSGRL 648 ++ Q ++ A +G GRL Sbjct: 623 KLQQARNRAARRQGAMPFGGRL 644 >gi|330721842|gb|EGG99812.1| DNA primase [gamma proteobacterium IMCC2047] Length = 639 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 180/664 (27%), Positives = 283/664 (42%), Gaps = 66/664 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +I V + N Y CPFH+EK+PSF + SK FY Sbjct: 5 IPQHFIDDLLDRTDIVEVIDGRVALRKSGQN-----YSGLCPFHNEKSPSFTVSQSKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ + FL F ++V+ LA AGV +PV +K+K Q L ++ Sbjct: 60 HCFGCGAHGNAIGFLMEFDRMEFPQAVEHLARQAGVEVPVERSANPEKKKKQDSLYDQLQ 119 Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A DFF L+ K YL R + + F +GYAP +LRE L + E+ Sbjct: 120 KAQDFFSQQLRQHPSKERAINYLKGRQLTGETAKAFAIGYAPPGWENLRETLSKSEKDEQ 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++IEAGLLI ++ YDRFR+R+IFPIR +RG+ IAFGGR L + KYLNSPE+ + Sbjct: 180 QLIEAGLLIKREDRDGCYDRFRDRIIFPIRDNRGRTIAFGGRVL-GDDKPKYLNSPESPV 238 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG LY + A + R ++VEGYMDV++L Q G+ V++LGT+ Sbjct: 239 FHKGNELYGLYEARQASNRLSR----------FLIVEGYMDVVALAQHGIHYTVATLGTS 288 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 +E L L+++ ++ CFDGDD G +AA +A+D L L G +V F+ L GEDPDS Sbjct: 289 ASEAHLNKLFRMVSEVIFCFDGDDAGRKAAARALDTALPILEDGRQVRFLFLPEGEDPDS 348 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + GK AFE+ + +++ L D L+ ++ + + D++A + + + L Sbjct: 349 LVHQEGKDAFEQRLNQAMTLPDYLFAAVSDGLNLDNLDDKARMSKLALEKMQPMPRGMLY 408 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------------ 457 Q + + Sbjct: 409 ELMIQQLAQMTGLSADNLKETAANITPKKTATNPSPAYGSNELAQGNATPSATDGYEDMP 468 Query: 458 ----------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 + + Q+S S+ E A L++HP + A Sbjct: 469 DFHADYNGDFEASYSTPHASQTSAPPRPRSRVTEPAEKAA-ALLLHHPELANTVSDIEAL 527 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 D+ +++L + Q +I E + L L + Sbjct: 528 RHIDSPGMEQLIE-ILELLKSQPQLNTADILAHWMGAHGMEAAETLKSLAEREQLVTP-- 584 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 D + Y Q+ L + + +Q++++ Q A + + L + Sbjct: 585 -----DNIENYFQSSLLLLQKHHVEQQRDQLYAQAAHTPLTSDE------MQQLKALTEA 633 Query: 628 IHQI 631 ++ Sbjct: 634 ARKL 637 >gi|328471948|gb|EGF42825.1| DNA primase [Vibrio parahaemolyticus 10329] Length = 586 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + F+ F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFKSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L +G + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKISETRPQPHKEIKRT 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ Q + L L++ + + Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|156973169|ref|YP_001444076.1| DNA primase [Vibrio harveyi ATCC BAA-1116] gi|156524763|gb|ABU69849.1| hypothetical protein VIBHAR_00849 [Vibrio harveyi ATCC BAA-1116] Length = 586 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 292/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113 +CF C V G+ + F+ F+E+++ LA+ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFNSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ R +++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------VLVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ Q + L L+ + + Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 ISTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|294629208|ref|ZP_06707768.1| DNA primase [Streptomyces sp. e14] gi|292832541|gb|EFF90890.1| DNA primase [Streptomyces sp. e14] Length = 638 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 146/638 (22%), Positives = 263/638 (41%), Gaps = 39/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPAHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A +++ L + A + +L RG D A F +GY+P L LR KGF Sbjct: 120 AHKLAAEWYAEQLASLAEAEAGRVFLAGRGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 +++++I +GL + DRFR RL++PIR G+V+ FG R L + KYLN+P Sbjct: 180 TDKELILSGLAQE--GRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLYEADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + K R ++VEGY DV++ AGV +++ Sbjct: 238 ETPIYKKSQVLYGIDLAKKEIAKVSRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVARYDLDTPGGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEH---------SGYGRYWKKNARHRDQKGPS 463 +K++ +R + + + L Q+++ SG ++R ++ + Sbjct: 405 AKLKERTVRREVAVQLAGLIGILDQEHVVNRVGYLAHRGLSGGSSLRSAHSRTHPERYVA 464 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E LL + P ++ + + + + Sbjct: 465 VSRPAVTGPALTLRNPVYATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQAIL 524 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + L Q+ V + + + + Y A Sbjct: 525 DAGGAEYGLSDAQ--DYLVSVREAAPDDQVRAMVTELAVEPIKLHKGAREADEAYAGAQL 582 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + R R + R+ +E++ + ++ + G+ + A + L Sbjct: 583 VTVRRRAVMRRIQEVQVTVRRLESGGDPAQLAAAQNEL 620 >gi|148266059|ref|YP_001232765.1| DNA primase [Geobacter uraniireducens Rf4] gi|146399559|gb|ABQ28192.1| DNA primase [Geobacter uraniireducens Rf4] Length = 587 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 152/635 (23%), Positives = 281/635 (44%), Gaps = 53/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P D + ++ I ++I YV + N Y CPFH EKTPSF+ N + Sbjct: 1 MSMIPDDKVSEVRERAAILDVISDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPGR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117 G ++CF C V G+ ++F+ + G +F E+V+ LA GV + +++ + Sbjct: 56 GIFHCFGCGVGGNAITFIMKIEGLTFPEAVKFLAKRVGVIIEERPLTATEKRQTDERELF 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 R+ E A F+ L + + YL+ RG+D+ E + +G+APD L +L Q+ Sbjct: 116 FRINEQAAKFYRRVLVQEPAGEAGRRYLERRGVDAATSEAYCIGFAPDKWDGLTRYLEQQ 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + GL + +S YD FRNRL+F I G+ I FGGR L KY+NS Sbjct: 176 RVPLPLAEKLGL-VKLRDSGGYYDTFRNRLLFVIADMHGRPIGFGGRVL-DDSLPKYINS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK + L+ A ++ I+VEGY D L+L QAGV+NVV+ Sbjct: 234 PESPIYHKSEVLFGLNLAKQAMR----------EQGTAIIVEGYFDHLALFQAGVRNVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTA+T ++LL + + ++ FDGD+ G +A ++++L L + + L G Sbjct: 284 TCGTAMTAGHVKLLQRYAGKVYTLFDGDNAGKKATLRSMELFLEEKY---AAHVIELPAG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDS+++ G AF + ++ P+ + T + + ++ L + I Sbjct: 341 DDPDSYLKKEGSEAFAGQVAKARPIFEFFLYDLMHQFDSRTVEGKVQIIELLTPRLMKIA 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + R Y + I L ++ + + S + S + K Sbjct: 401 NPIERDLYLKEISRMLGVDLRQLQKKI--------------GRSPISTADLASPPERKKR 446 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 P E L+ + +P +++ + A + +L + + + Sbjct: 447 GIGP---EEMLVSLMGKYPEVVKRVREYGAANLFG-PDLLPVVETIMTQTDAGSEVDWGV 502 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I +++ + + R A L+ +D + + Q R L + + Sbjct: 503 IMEQVGSA---------EERSRLAALFMNDCHLEEIDANKAFDQCRMSRDRSTLKDKDVK 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E+++++AQ+ + ++E+ ++ IL + + Q+ Sbjct: 554 ELKRELAQLDS--DSERYWEILKILDALRNKKSQL 586 >gi|330961075|gb|EGH61335.1| DNA primase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 651 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 178/661 (26%), Positives = 296/661 (44%), Gaps = 69/661 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAAAEFYRQALKSHPARKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A+D L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALDATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRTLMRQRLSEITGLTGEAVSQLVQSAPAEAPPSYNPYVDYDAAPDFADYQPQGGYEAQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + +++ + E + L++ Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ--TELSPE-EKIQLRELLN 638 Query: 620 I 620 Sbjct: 639 R 639 >gi|145300337|ref|YP_001143178.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449] gi|142853109|gb|ABO91430.1| DNA primase [Aeromonas salmonicida subsp. salmonicida A449] Length = 595 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 168/631 (26%), Positives = 282/631 (44%), Gaps = 47/631 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL+ I LI V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLI 118 Y+CF C G+ + F+ G F ++++ LA++ G+ +P + + +L Sbjct: 59 YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASMQGMQVPREQSMGGSASSQPAVSKELY 118 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ F+ +LK+ + YL RG+ ++ F +GYAP +R Sbjct: 119 ELMSQIARFYESNLKS--APQAVEYLKGRGLTGEVVKRFNIGYAPADWDQVRRRFGASRD 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E+ +I G+LI D+ A SYDRFR+R++FPIR RG+VI FGGR L + KYLNSPE Sbjct: 177 HEQLLISGGMLITRDSGAGSYDRFRDRIMFPIRDKRGRVIGFGGRVL-GDGTPKYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ L+ + + R I++VEGYMDV++L Q + V++L Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYDIDYAVAAL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T + L++ + +V C+DGD+ G AA++A+D L HL G + FV L GED Sbjct: 286 GTSTTTDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALSHLQDGRELKFVFLPDGED 345 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK FE L+ ++ P D +++R + + + + E+ I + + Sbjct: 346 PDSLVRQIGKEGFEALLDQAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + ++ K K + + L Sbjct: 406 FTREGLITRLSSMMRWGENKQRIAELFARNSQPKAELTKPKAAKLTPL------------ 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L ++ +P++ E ++ L L + Q + Sbjct: 454 ------RRALALMVQYPSVTAELPAMPELAGLRVQGIKFLLQ-LHQQILAQSGITTGILL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + GE+L QL + + +++ + + + L ++ EE+ Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEVKLDQEPDILGELQDTFVGFIN-----QFLKQRIEEL 561 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++AQ +E+T L+ ++ EV + Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQTEKR 590 >gi|153834243|ref|ZP_01986910.1| DNA primase [Vibrio harveyi HY01] gi|148869431|gb|EDL68437.1| DNA primase [Vibrio harveyi HY01] Length = 586 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 292/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------DPKIEKKEKI 113 +CF C V G+ + F+ F+E+++ LA+ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGGGGQFNSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRNLYDLMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ R +++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------VLVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKQAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKTSETRPQPHKEIKRT 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ Q + L L+ + + Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|28897179|ref|NP_796784.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633] gi|153839253|ref|ZP_01991920.1| DNA primase [Vibrio parahaemolyticus AQ3810] gi|260361471|ref|ZP_05774530.1| DNA primase [Vibrio parahaemolyticus K5030] gi|260878084|ref|ZP_05890439.1| DNA primase [Vibrio parahaemolyticus AN-5034] gi|260896979|ref|ZP_05905475.1| DNA primase [Vibrio parahaemolyticus Peru-466] gi|28805388|dbj|BAC58668.1| DNA primase [Vibrio parahaemolyticus RIMD 2210633] gi|149747218|gb|EDM58206.1| DNA primase [Vibrio parahaemolyticus AQ3810] gi|308088718|gb|EFO38413.1| DNA primase [Vibrio parahaemolyticus Peru-466] gi|308090022|gb|EFO39717.1| DNA primase [Vibrio parahaemolyticus AN-5034] gi|308110979|gb|EFO48519.1| DNA primase [Vibrio parahaemolyticus K5030] Length = 586 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 174/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + F+ F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGSGQFKSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L +G + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRKKISETRPQPHKEIKRT 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ Q + L L++ + + Sbjct: 456 PM-----------REVIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|330831099|ref|YP_004394051.1| DNA primase [Aeromonas veronii B565] gi|328806235|gb|AEB51434.1| DNA primase [Aeromonas veronii B565] Length = 595 Score = 383 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 172/631 (27%), Positives = 281/631 (44%), Gaps = 47/631 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL+ I LI V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPQSFIDDLLVRTDIVELIDSRVRLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLI 118 Y+CF C G+ + F+ G F ++++ LA++ G+ +P + + DL Sbjct: 59 YHCFGCGAHGNAIGFVMEYDGLEFPDAIEELASMQGMQVPREQSIGGSANSQPAVSKDLF 118 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ F+ +LK+ YL RG+ ++ F +GYAP +R Sbjct: 119 ELMNQIARFYESNLKS--APHAVEYLKGRGLTGEVVKRFNIGYAPSDWDQVRRRFGASRD 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E+ +I G+LI DN SYDRFR+R++FPIR RG+VI FGGR L + KYLNSPE Sbjct: 177 HEQLLISGGMLITRDNGPGSYDRFRDRIMFPIRDKRGRVIGFGGRVL-GDGTPKYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ L+ + + R I++VEGYMDV++L Q + V++L Sbjct: 236 TPIFHKGRELFGLYEVKQAHKDPRR----------ILVVEGYMDVVALGQYDIDYAVAAL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T + L++ + +V C+DGD+ G AA++A+D L HL G + FV L GED Sbjct: 286 GTATTSDHIHTLFRTTAEVVCCYDGDNAGREAAWRALDNALPHLQDGRELKFVFLPDGED 345 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK FE L+ E+ P D +++R + + + + E+ I + + Sbjct: 346 PDSLVRQIGKEGFEALLDEAQPFADFMFERLGRDAALSGEAGKFEVANKAAELIRRVPEG 405 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + ++ K K ++ + L Sbjct: 406 FTREGLITRLSSMMRWGENKQRIAELFARNSQPKAEVNKPKAAKLTPL------------ 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L ++ +P + E ++ L L + Q + Sbjct: 454 ------RRALALMVQYPTVTAELPPMPELAGLRVQGIKFLLQ-LHQQILAQPGITTGILL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + GE+L QL + + +++ + + + L ++ EE+ Sbjct: 507 EHWRGTKEGEILAQLAMHDLFEEIKLDQEPDILGELQDTFVGFIN-----QFLKQRIEEL 561 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++AQ +E+T L+ ++ EV I+ Sbjct: 562 QAKVAQ--EGLSSEETQELMMLIREVQIEKR 590 >gi|256832746|ref|YP_003161473.1| DNA primase [Jonesia denitrificans DSM 20603] gi|256686277|gb|ACV09170.1| DNA primase [Jonesia denitrificans DSM 20603] Length = 634 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 147/655 (22%), Positives = 254/655 (38%), Gaps = 47/655 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 RD + + I +++G++V G CPFHDEK+PSFH G Y Sbjct: 5 IKRDDVDAVRERAKIDDIVGEHVTLKPAG----VGSMKGLCPFHDEKSPSFHVRPHVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C GD +SF+ + G +F E+V+ LA G+ L + + E + L+ Sbjct: 61 HCFGCGEGGDVISFIQKVDGLTFTEAVEYLAGRVGLTLRYEEGSERRGEEPSRRARLLAA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A ++ L ++ +L +R F +GYAP L LR KGF+ Sbjct: 121 HRIAAAYYQEQLMSSEAATARQFLADRSFSRDDAAHFGVGYAPKGWDHLLTVLRSKGFTT 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E+I GL+ G YDRFR RL++PIR G+VI FG R L + KYLN+PET Sbjct: 181 EEIQGTGLMSSGQRGM--YDRFRGRLMWPIRDVTGEVIGFGARRLYDDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K R +++VEGY DV++ +GV V++ G Sbjct: 239 SLYRKSQVLYGIDLAKRDIAKEKR----------VVVVEGYTDVMAAHLSGVTTAVATCG 288 Query: 300 TALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 TA ++ + + + I+ FDGD G +AA +A D Sbjct: 289 TAFGVDHVKFVRRLLGDTHAGGGVRLASGGSMGGEIIFTFDGDAAGRKAAMRAFDEEQRF 348 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401 L + + G DP + G A L+ +PL + + + E +T + R Sbjct: 349 LA---QTFVAVQPDGLDPCELRQQRGPAAVADLVNRRVPLFEFVLRTTLEAFPLHTAEGR 405 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 + I+D LR YS+ + L GR + + Sbjct: 406 VGALRQCAPVVASIRDAALRPEYSRVLAGWLGMDLDVVRQAVQRAGRSSRSSGGEPSDAQ 465 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWS 520 ++ L S + E L ++ P + + L + + ++ Sbjct: 466 TTEAL--DGAPAPHASDPVARLERQTLEVMLQQPHEVPGAVFDALPAQAFAVPAWRAVFD 523 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + E + V + + + + Y Q Sbjct: 524 AIRAAGGLTAAASLSAV--EWVEAVLEAAADPVRVLVNELSVAPLPEDRP--EAMPLYVQ 579 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + ++RQ +++ ++ ++ + E + ++L ++ Q Q+ E Sbjct: 580 GIVRAFIDMGMTRQIGDVKSRLQRMDYASDPEAYQEVYTLLVDLEAQRRQLRDTE 634 >gi|323703333|ref|ZP_08114983.1| DNA primase [Desulfotomaculum nigrificans DSM 574] gi|323531696|gb|EGB21585.1| DNA primase [Desulfotomaculum nigrificans DSM 574] Length = 600 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 166/622 (26%), Positives = 278/622 (44%), Gaps = 41/622 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+D+ I ++ +Y+ ++R N Y A CPFH EKTPSF+ N K Sbjct: 4 RIPDEVIEDIRQKSDIVEVVSRYISLEKRGRN-----YVALCPFHQEKTPSFNINPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C V G+ FL + G SF E+V+ A GV +P P+ + Q +++ Sbjct: 59 FHCFGCGVGGEVFKFLMLMEGLSFPEAVRLQGAKVGVVIPEQLSPRDLARRSKQQRALQI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A DF+ L + YL R + E F+LGYAP+ +L + L KG S Sbjct: 119 YALARDFYRALLSRDVGAKAVEYLAGRNLSETVRETFQLGYAPEGWDNLTKFLTAKGISV 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++++ GL YDRFRNR+IFPI +G+V+ FGGRT+ + KYLNSPE Sbjct: 179 DELVKLGLA-QSKAPGRCYDRFRNRIIFPIWDPQGRVVGFGGRTM-GDDLPKYLNSPEGE 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F+KG+ LY A ++ + +L+EGY+DV+S Q GV N V+SLGT Sbjct: 237 YFNKGQLLYGLHLARRGIR----------EQGYAVLMEGYVDVVSTYQHGVTNAVASLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T Q +LL + ++V+ +D D G++AA +A ++ G +V + G+DPD Sbjct: 287 AFTREQGKLLMNYTHQVVIAYDSDSAGVKAAVRAAEI---LQELGGQVRIATIPEGKDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ YG+ + +I ++ L+ + + E+ ++ + + + + Sbjct: 344 EFIQKYGQPGWADVIKNAVSLIQFKLLQAVKQY---GLREKKKILLEVLPNLAAVASPLE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Q LQ ++ + E + R +K D+ + + S+ Sbjct: 401 LEEAIQQTATVLQVNWETVLAEVKKFKRNSRKTTPVWDKTVKNSHNIPSN-ANPAPKDAR 459 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S E LL + H I+ EL + N + Q ++S + + + Sbjct: 460 SNAETGLLRLALEHQDIVNRIEAELGREFFQNPDYQVIFSAILEL---GAQVSAARLFDK 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E L + L + E ++ Q + ++ KR + EE+ Sbjct: 517 LKEPQQKVLSELLVQ------------EIPGENLDQIFNDLVSTIKRASG-KARLEELLM 563 Query: 601 QIAQVTAKGEAEKTAILISILH 622 Q+A G E+ L ++ Sbjct: 564 QLAVAEKAGNTERVLRLRQEIN 585 >gi|261250213|ref|ZP_05942789.1| DNA primase [Vibrio orientalis CIP 102891] gi|260939329|gb|EEX95315.1| DNA primase [Vibrio orientalis CIP 102891] Length = 585 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 171/634 (26%), Positives = 294/634 (46%), Gaps = 63/634 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + F+ F+E+++ LA+ G+ +P + + + + Sbjct: 60 HCFGCGVHGNAIDFMMEYERLEFVEAIEELASFLGLDVPREQRQGGGVQSNQPKANSEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L L+ F+ LK + K YL +RG+ ++ F +GY D +R++ Sbjct: 120 RNLYDLMGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q ++E ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 180 QAPQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + ++ + +++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAYREPPK----------VLVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412 GEDPDS++R +GK AFE+ I ++ PL L+ E N + ++ L H I Sbjct: 348 DGEDPDSYVRKHGKEAFEQQIEQATPLSSYLFDNLIEIHQLNLGGNEGKSALRAHASVLI 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I D Y Q + ++L + E +G+ ++ + + + P Sbjct: 408 DKIPDP-----YFQELLEKL-------LDERTGFDNQLRQPRKKQSESRPQPHKEIKRTP 455 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 ++ LI +P+ Q + L L+ + + Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVRELTVPGL-SLFVEVLEYCHQHPNI 503 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + LL +L + + + + Q + Sbjct: 504 TTGQLIEHWRNSSHEALLSRLAGWEIPLD-EDNEQDIFLDSLDKILAQCV---------E 553 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + + + E+ L++++ ++ Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585 >gi|320157474|ref|YP_004189853.1| DNA primase [Vibrio vulnificus MO6-24/O] gi|319932786|gb|ADV87650.1| DNA primase [Vibrio vulnificus MO6-24/O] Length = 587 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C G+ + F+ F+E+++ LA+ G+ +P + + Sbjct: 60 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ + F+ + LK + K YL RG+ ++ F +GY D +R++ Sbjct: 120 RSLYDLMASISQFYRNQLKLSSGKNAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q ++E ++ G+LI+ + YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 180 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS+IR +GK FE+ + ++PL + ++ + ++ + A+L I+ Sbjct: 348 DGEDPDSYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + LR Y + + RL + ++ + + + + + P + L ++ + Sbjct: 408 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ LI P+ Q L L + + Sbjct: 459 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 507 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + +LL +L + + + + Q + +Q Sbjct: 508 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 557 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + + + L++++ ++ Sbjct: 558 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 587 >gi|323493626|ref|ZP_08098747.1| DNA primase [Vibrio brasiliensis LMG 20546] gi|323312149|gb|EGA65292.1| DNA primase [Vibrio brasiliensis LMG 20546] Length = 585 Score = 382 bits (981), Expect = e-103, Method: Composition-based stats. Identities = 171/634 (26%), Positives = 294/634 (46%), Gaps = 63/634 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + F+ F+E+++ LA+ G+ +P + + + + Sbjct: 60 HCFGCGVHGNAIDFMMEYERLDFVEAIEELASSLGLDVPREQRQGGGFQSNQPQANSEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L ++ F+ LK + K YL +RG+ ++ F +GY D +R++ Sbjct: 120 RNLYDIMGSIAQFYRDQLKQPKSKVAIDYLKDRGLSGQIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q +++ +I G+LI+ DN YDRFR R++FPIR RG+VI FGGR + + KYL Sbjct: 180 QTPQTQDMLISGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + ++ + I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAHREPSK----------ILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQYLKTGNTLKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412 GEDPDSFIR +GK AFE+ + ++ PL L+ E N + + ++ L H I Sbjct: 348 DGEDPDSFIRKHGKDAFEQEVEQATPLSSYLFDNLIELHQLNLGSNEGKSALRAHASALI 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I D Y Q + ++L + E +G+ ++ + + P Sbjct: 408 DKIPDP-----YFQELLEKL-------LDERTGFDNRLRQARKKTNDSRPQPHKEIKRTP 455 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 ++ LI +P+ + L L+ + + Sbjct: 456 M-----------REVIALLIQNPSYAEMVPDLSTVRELTVPGL-SLFVEVLEYCHQHPNI 503 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + LL +L + + + + Q + Sbjct: 504 TTGQLLECWRNTSHEALLSRLAGWEIPLD-EDNEKDIFLDSLDKILAQCV---------E 553 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + + + E+ L++++ ++ Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585 >gi|330812145|ref|YP_004356607.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380253|gb|AEA71603.1| DNA primase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 652 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 179/671 (26%), Positives = 295/671 (43%), Gaps = 81/671 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRLQMKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRQHKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A DF+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAADFYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AGLLI+ + YDRFR+R++FPIR +RG++IAFGGR L + KYLNSPET Sbjct: 180 QRAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E ++ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHMKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLPCLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + + PL D +++ TE + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------- 441 LR Q + + + Sbjct: 409 NLRTLMRQRLTEITGLNSEAVNQLVHSAPQEAPPAYDPGVDYDAMPDFADYHQPQQDYAP 468 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498 + + + D+K + + + + + P+ E A L TL++HP + Sbjct: 469 QQEWTPKKPGSGGKKWDKKPWDKNGKRGDRDQPRAPRVPAAVEPPTLAALRTLLHHPQLA 528 Query: 499 QEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 ++ + + +L L + ++ R G LLK L + Sbjct: 529 EKVEDA---GHFAAEDHSNTQLLVALLEAVQKNPKLNSFQLIARWHGTEQGRLLKALAEK 585 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 W + +L+ +R R L + + + +E T+ Sbjct: 586 E-----WLIEGDNLEQQFFDTIT-SLSARQRERNLEQLLRKARQ----------SELTSE 629 Query: 617 LISILHEVHIQ 627 + L ++ + Sbjct: 630 EKNQLRDLLSR 640 >gi|37678746|ref|NP_933355.1| DNA primase [Vibrio vulnificus YJ016] gi|37197487|dbj|BAC93326.1| DNA primase [Vibrio vulnificus YJ016] Length = 598 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 16 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C G+ + F+ F+E+++ LA+ G+ +P + + Sbjct: 71 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 130 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ + F+ + LK + K YL RG+ ++ F +GY D +R++ Sbjct: 131 RSLYDLMASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 190 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q ++E ++ G+LI+ + YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 191 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 248 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 249 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 298 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 299 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 358 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS+IR +GK FE+ + ++PL + ++ + ++ + A+L I+ Sbjct: 359 DGEDPDSYIRQFGKAQFEQQVTNAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 418 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + LR Y + + RL + ++ + + + + + P + L ++ + Sbjct: 419 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 469 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ LI P+ Q L L + + Sbjct: 470 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 518 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + +LL +L + + + + Q + +Q Sbjct: 519 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 568 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + + + L++++ ++ Sbjct: 569 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 598 >gi|238060519|ref|ZP_04605228.1| DNA primase [Micromonospora sp. ATCC 39149] gi|237882330|gb|EEP71158.1| DNA primase [Micromonospora sp. ATCC 39149] Length = 652 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 146/649 (22%), Positives = 251/649 (38%), Gaps = 45/649 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+ +I V G+ CPFHDEK+PSF+ + ++ Sbjct: 32 RIRDEDIALVRERTSIAEVISDTVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 87 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK------IEKKEKIQT 115 +YCF C GD + FL SF+ESV+RLAA AG+ L V+ ++ + Sbjct: 88 WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVENDQATPRAARPQQGQRQ 147 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ A +F+ L A + +L +RG D A + + G+APD+ L +HLRQ Sbjct: 148 RLVAAHAAAVEFYQAQLTTAGARPAREFLAKRGFDRAAAQRYGCGFAPDAWDLLTKHLRQ 207 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 +GF+ ++++ AGL + T DRFR RL++PIR G I FG R L + KYL Sbjct: 208 QGFTHDELVTAGLSRPSRSG-TLIDRFRRRLMWPIRDITGDPIGFGARRLFDDDDGPKYL 266 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+PET ++ K LY A + K + +++VEGY DV++ A V Sbjct: 267 NTPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLADVPTA 316 Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 V++ GTA + +L + ++ I+ FDGD G +AA +A D + R Sbjct: 317 VATCGTAFGADHISVLRRLLLDTDDVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---R 373 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + DP G A L+ PLVD + +T D R E Sbjct: 374 TFIAVSPDNMDPCDLRLAKGDLAVRDLVARREPLVDFALRHVINRYDLDTVDGRVEAMRR 433 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + IKD++ R Y + + L + G + Sbjct: 434 AAPIVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAASGQPAG-------GTASAPA 486 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 +++ SL E L + P + + + Y + + + + Sbjct: 487 RAARPAPGADSPMSLVEREALKLALQEPVLAGPMFDAVDAAAYRHPVHVAVREAIAAAGG 546 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + + L V + + + Y + Sbjct: 547 AAAATQGAVWVEAVRDACADLAAQAL---VGELAVEPLRIDGEPDP---RYVSVTIARLQ 600 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + ++ + +++ +I ++ ++ L L + + Q A Sbjct: 601 WGSVTGRVRDLKSKIQRINPVSNKDEYFALFGELLSLEQHARALREQAA 649 >gi|332086725|gb|EGI91865.1| DNA primase [Shigella boydii 5216-82] Length = 581 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SLK YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|324997357|ref|ZP_08118469.1| DNA primase [Pseudonocardia sp. P1] Length = 621 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 144/646 (22%), Positives = 261/646 (40%), Gaps = 43/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ + + ++ +YV R G CPFHDEKTPSF+ S G Sbjct: 4 RIRDADITEVRNRVRVEEIVEEYVALRRAGA----GSLKGLCPFHDEKTPSFNVRPSHGT 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C G + F+ + F E+V+RLA GV L + ++ L+ Sbjct: 60 FHCFGCGEHGSVIDFVMKMEVIGFPEAVERLADRCGVRLTYEGGGSSVQRDRGTRSRLLE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ L+ + +L ERG D A E F GYAP ++ +HL +G+ Sbjct: 120 INRKAAEFYAEQLRTPAGRAAMQFLSERGFDQAAAEKFGCGYAPAGWDTVTKHLLGQGYQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSP 237 +++I++G+ + + DRF RL++PIR G V+ FG R L + KYLN+ Sbjct: 180 LDELIKSGIAKE--GRRGAIDRFHRRLLWPIRDLAGDVVGFGARRLFDDDGIEAKYLNTS 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K L+ A + KS +++VEGY DV+++ AGV V+S Sbjct: 238 ETPVYRKTHVLFGLDQAKREIAKS----------RQVVVVEGYTDVMAMHLAGVPTAVAS 287 Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + ++ + ++ FDGDD G +AA KA + + Sbjct: 288 CGTAFGSEHISVIRRLIGDDSFDRGEVIFTFDGDDAGQKAAQKAFEGDQSFAT---QTYV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + G+DP +G A + L+ PL + + E N T + R Sbjct: 345 AIAADGQDPCELRHNHGDAAVKDLVARREPLFEFAIRTELRNHRLETAEGRVAALQQTVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + IK + LR Y++ + + + R R ++ Sbjct: 405 IVAKIKREDLRDEYARRLAGWVGWDDIAVVVRRVRETAGGPAEGRSR---------RRAP 455 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 L K + L + P ++ + EL + + + + + + Sbjct: 456 LPAPKRDDTQLHLQREALKAALQIPGVVGPGFDELPEAGFTHPQFAAVQRAILGAGGVGA 515 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E + + +K+L ++ GL + N ++R Y + R L Sbjct: 516 GLEGPEWLDAVVAEIATDDVKRLVSELAVEGLE--LPKRNTDELR--YVNGVLAGVRLGL 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + R+ +++ Q+ + ++ + ++ L +L + Q+ Q A Sbjct: 572 VEREIADLKSQLQRTNSETDHDEYMDLFGVLVPLEQYKIQLREQAA 617 >gi|103486469|ref|YP_616030.1| DNA primase [Sphingopyxis alaskensis RB2256] gi|98976546|gb|ABF52697.1| DNA primase [Sphingopyxis alaskensis RB2256] Length = 625 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 199/638 (31%), Positives = 309/638 (48%), Gaps = 26/638 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ +L I +S LIG+ V R +Y ACCPFH+EKTPSF ND KG Sbjct: 1 MTLTPQWLDELRSRITLSTLIGRTVKITRAGR-----EYKACCPFHNEKTPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G SF+++V+ LAA AG+ +P DP+ KK + Q L + Sbjct: 56 FYHCFGCGAHGDAIRWMTDQRGLSFMDAVKELAAEAGMEVPAPDPRAAKKAEEQASLRDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ A ++F L ++ YL +RGI + F G APDSR +L+E L K F Sbjct: 116 MQAAAEWFAQQLGSSNGAPAREYLAKRGISEATRKAFGFGLAPDSRSALKEAL--KTFPT 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAG+LI + YDRFR RL+ PIR +RG+VIAFGGR L KYLNSP+T Sbjct: 174 AMLVEAGMLI-AVDDKEPYDRFRGRLMIPIRDARGRVIAFGGRIL-GDGEPKYLNSPDTP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LYN A +++ R I++VEGYMDV++L +AG+ + V+ LGT Sbjct: 232 LFDKGRTLYNLDKASPASRRTNR----------IVVVEGYMDVIALAEAGITDAVAPLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL +LW++ P +LCFDGD G +AA +A L L PG + F L G+DPD Sbjct: 282 ALTENQLAMLWRMVPVPILCFDGDSAGQKAAMRAAMRALPLLRPGFSLAFATLPAGQDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G F ++ ++ PLV+ LW E TP+ERA L+ L + I+D + Sbjct: 342 DLVRAKGAEGFAAILEDAQPLVERLWAHEVAAGPLATPEERAALKTRLLAHADVIEDADV 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK- 479 R++Y +A R++L LF + + + R + P RL L + Sbjct: 402 RHHYREAFREKLDALFARAPAGRGPRVPWAPQPGRGGRRFAPDPRLQPPGEETRALGQTG 461 Query: 480 -PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 AALL L+ +P ++ + L + ++ +L + ++ E + Sbjct: 462 IAGPLAAALLGGLLRYPQAIRRNEEALCRLAIPDSGDAELLGLMLDIANAREGLDCEGLL 521 Query: 539 QRLC-----ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L R L + L + + + + + + Sbjct: 522 AILEPMKVYNRAMTLLRADGMHFSFNRRLEGEEVDKAREIALRDLDEYIGVLVTQPEIRA 581 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + E + + L ++ ++ ++ + Sbjct: 582 RLAEATADYMRTMDDEGHARQQKLRAMDEDLTRRLAAL 619 >gi|295110290|emb|CBL24243.1| DNA primase [Ruminococcus obeum A2-162] Length = 600 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 163/611 (26%), Positives = 267/611 (43%), Gaps = 35/611 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I +++ QYV RR + Y+ CPFH+EKTPSF K Sbjct: 1 MRYSDDIIEEVRQKNDIVDVVSQYVRLTRRGS-----TYFGLCPFHNEKTPSFSVTPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F E+++ LA AGV LP ++ +K + + +L+ Sbjct: 56 MYYCFGCGAGGNVYNFIMEYENYTFGEALKHLADRAGVELPKIEYSREVREKAEQRAELL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++++ L+ K + YL RG+ + F LGY+ L L+ KG+ Sbjct: 116 EINKQAAQYYYYQLRTEGGKIGYQYLSGRGLSEETMRKFGLGYSDKFGGGLYTFLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E++ E+GL YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 176 SDERLRESGLFNVD-ERHGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A +K ++IL EGYMDV+S+ QAG N V+SL Sbjct: 234 TKIFDKSRNLYGLNIARTTRKK------------YLILCEGYMDVISMHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT LL + + ++L +D D+ G+RAA + I + G V L +D Sbjct: 282 GTALTSGHASLLKRYTQEVLLLYDSDEAGIRAALRGIPI---LRDAGVSSRVVNLKPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ + ++ + P + + +KD+ Sbjct: 339 PDEFIKNMGAEAFEERLGQASDSFMFRVSIAESEFPMDEPQGQNRFFERCAELLLELKDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +AI + + + + R + + +Q K K Sbjct: 399 LERNLYIEAIVKKYRGQYGVSAEDLRK--RVNTLALKGTPAENRTQPKTSGGQNKKKKES 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L+ +P I + Q L + +++ LF E+ P ++ Sbjct: 457 ASDQAQKLMLTWLVTYPGIFDKVAQYLNAEDFIVPLYKEVAQMLFRQREEEGQVNPAKLL 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR---------FR 589 + + L A + + ++LA R + Sbjct: 517 NSFTDSEEQREVASLFNATIHLETQQEQDRAFADTLLRIKAESLAEKNRNLDPTDMAGLQ 576 Query: 590 LLSRQKEEIEK 600 + R+K+E+E+ Sbjct: 577 QILREKKELEE 587 >gi|331659357|ref|ZP_08360299.1| DNA primase [Escherichia coli TA206] gi|331053939|gb|EGI25968.1| DNA primase [Escherichia coli TA206] Length = 581 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGSSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|257483093|ref|ZP_05637134.1| DNA primase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891183|gb|EGH23844.1| DNA primase [Pseudomonas syringae pv. mori str. 301020] gi|330985809|gb|EGH83912.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011673|gb|EGH91729.1| DNA primase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 651 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|291522136|emb|CBK80429.1| DNA primase [Coprococcus catus GD/7] Length = 593 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 151/606 (24%), Positives = 270/606 (44%), Gaps = 26/606 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ I ++IG YV ++ + Y+ CPFH+EK+PSF + +K Sbjct: 1 MYYPDEVIEEVRSSNNIVDIIGGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSPNKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F E+V+ LA AG+ LP + +++ + L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENQTFPEAVKILADRAGIALPEAELTEEQKRERNKRQLLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++F++ L + ++ YL+ R + F LGYA L +L++KG+ Sbjct: 116 EINKTAANYFYYLLNGDQGQQAREYLENRRMSKETQIHFGLGYASKYSNDLYLYLKKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ + E GLL D ++D+F NR++FPI +VI FGGR + + KYLNSPE Sbjct: 176 QDQILKETGLLT-YDEKRGAHDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+LF K +NLY A + ++I+ EGYMDV+++ QAG N V+SL Sbjct: 234 TMLFDKSRNLYGLNYAR------------TSRKPYMIICEGYMDVIAMHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL + + + L +D D G +AA +AI + G V + + +D Sbjct: 282 GTAFTTQHSVLLKRYTQEVRLAYDSDGAGQKAALRAIPI---LKSAGINVRVIHMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF++ I + +N + P+ RA + + + Sbjct: 339 PDEFIKNLGTEAFQERIDAAESSFMFEISVLEKNYKQSDPEGRASFMKAMARRLLEFPQE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y AI R ++ + +G + +R + + + Sbjct: 399 LERNIYIDAIAGRYGIASEELKRMVNSFGASMSREQVEAAIYQQQEREEMPAKKRVEKED 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L LI P+I + + + + + + +F + +P I Sbjct: 459 SVLTAQKFFLTWLIEEPSIYDKTKDYINEDDFVEPLYHHVAALVFEELRATGQVMPARIL 518 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + L A E + + + ++ +L + R + R+ ++ Sbjct: 519 NQFEDVEEQKTAASLFNTRLKTDDDPAVREKALNETVKRIKK-NSLELKSRSV-REIADL 576 Query: 599 EKQIAQ 604 +K I + Sbjct: 577 QKIIKE 582 >gi|330955105|gb|EGH55365.1| DNA primase [Pseudomonas syringae Cit 7] Length = 651 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|239917165|ref|YP_002956723.1| DNA primase [Micrococcus luteus NCTC 2665] gi|281414365|ref|ZP_06246107.1| DNA primase [Micrococcus luteus NCTC 2665] gi|239838372|gb|ACS30169.1| DNA primase [Micrococcus luteus NCTC 2665] Length = 636 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 166/657 (25%), Positives = 270/657 (41%), Gaps = 53/657 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I + + ++ ++V G + CPFHDE+TPSFH G Y Sbjct: 5 IVRKDIDLVRERTDLKAVVEEFVTLRSAG----VGSFKGLCPFHDERTPSFHVRPGVGTY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C GD +SFL L +F+E+V+RLA+ GV L D + + + L Sbjct: 61 HCFGCGAHGDVISFLMELEHTTFMETVERLASRVGVELHYEDGGTGPDKAETGRRRRLFE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +FF +L + + +L +RG F LGYAP L +HLRQ+GF Sbjct: 121 ANKVADEFFRRALGSPEAQAARDFLTQRGFTQEHAAQFGLGYAPQGWSHLLDHLRQRGFR 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +E++ +GL+ +G YDRFR RL++PIR G I FG R L + KYLN+PE Sbjct: 181 DEELRASGLVSEGQR--GLYDRFRGRLLWPIRDMTGATIGFGARKLYDDDPGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K ++LVEGY DV++ AGV V++ Sbjct: 239 TPLYKKSQVLYGIDLAKRTIAK----------ERQLVLVEGYTDVMAAHLAGVGTAVATC 288 Query: 299 GTALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ +L ++ FDGD+ G +AA KA D L + + Sbjct: 289 GTAFGADHIKVARRLISDDGTGGEVIFTFDGDEAGQKAALKAFDEDHRFLA---KTFVAV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A LI PL + + ++ NT + RA H + Sbjct: 346 EPSGMDPCDLRMQKGDEAVRALIASRRPLFEFAIRAGLKHYDLNTVEGRAGALRHAAPIV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------------ 460 IKD LR Y + + L + GR ++ + Sbjct: 406 AGIKDAVLRPGYERELAGWLGLDPNAVHRAVAAAGRAPRRGPEPEARPTLASDGQAVGPT 465 Query: 461 ---GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYDNNELQ 516 G + +V + RE L ++ HP +L EQ+ L R+ + Sbjct: 466 GRHGEAAAPAPRIVVPVDPRDPVARRERESLEVVLQHPTLLSAEQWTALYAARFTVPQYA 525 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + QR + + +++ V + + DV + Sbjct: 526 AVHQGVKVAGSAGATP------QRWVDAVRDAVPQEVAGVVSELAVRDL-PARTPEDVDR 578 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + +++ R KEE+ ++ ++ +G+ + L S L E+ + + + Sbjct: 579 YCRDIMNRLFALQIVHR-KEELLGRLQRLGPEGDPAEFTRLNSELMELEARRRALRA 634 >gi|289649020|ref|ZP_06480363.1| DNA primase [Pseudomonas syringae pv. aesculi str. 2250] Length = 651 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-SDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|260775519|ref|ZP_05884416.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450] gi|260608700|gb|EEX34865.1| DNA primase [Vibrio coralliilyticus ATCC BAA-450] Length = 585 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 293/634 (46%), Gaps = 63/634 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--------PKIEKKEKIQ 114 +CF C G+ + F+ F E+++ LA+ G+ +P + + + + Sbjct: 60 HCFGCGAHGNAIDFMMEYERLEFPEAIEELASYLGIDVPREQRQGGRFPANQPQANTEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L L+ F+ LK + K YL ERG+ ++ F +GY D +R++ Sbjct: 120 RNLYDLMTGIAQFYRDQLKLSTSKVAIDYLKERGLSGEIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q+ +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR + + KYL Sbjct: 180 QQKQAQDMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVTQAYR----------EPPQILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412 GEDPDS+IR YGK AFE+ + +++PL L++ E N + + ++ L H + I Sbjct: 348 DGEDPDSYIRKYGKDAFEQQMHQAIPLSRYLFENLIEIHQLNLGSNEGKSALRAHASSLI 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 N I D Y Q + ++L + E +G+ ++ R ++ P Sbjct: 408 NKIPDP-----YFQELLEKL-------LDERTGFDNRLRQPRRKTNETRPQPHKELKRTP 455 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 ++ LI +P+ Q + L L+ + Sbjct: 456 M-----------REVIALLIQNPSYAQMVPDLSSVKGLSVPGL-SLFVEVLEYCHHHPNV 503 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + LL +L + + + + Q + Sbjct: 504 NTGQLTEHWRNTSHDALLSRLAGWEIPLD-EDNEQDIFLDSLDKILAQCV---------E 553 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + + + E+ L++++ ++ Sbjct: 554 KQIENLQAK--ERSVGLSTEERRELLALMLDLKA 585 >gi|187730978|ref|YP_001881828.1| DNA primase [Shigella boydii CDC 3083-94] gi|187427970|gb|ACD07244.1| DNA primase [Shigella boydii CDC 3083-94] Length = 581 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDTRVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMLNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|330970855|gb|EGH70921.1| DNA primase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 651 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 179/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP ++ +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNMSKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|330878418|gb|EGH12567.1| DNA primase [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963832|gb|EGH64092.1| DNA primase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 652 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A++F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446 LR Q + + + Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468 Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498 + N + D + + + + + P+ E A L TL++HP + Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 ++ + + ++ +L L + ++ R G LL+ L + Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE- 586 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 W T+ +L+ +R R L + + E +A Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631 Query: 619 SILHEVHIQ 627 L E+ + Sbjct: 632 IQLRELLNR 640 >gi|330980977|gb|EGH79080.1| DNA primase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 651 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|289676147|ref|ZP_06497037.1| DNA primase [Pseudomonas syringae pv. syringae FF5] Length = 651 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|300780731|ref|ZP_07090585.1| DNA primase [Corynebacterium genitalium ATCC 33030] gi|300532438|gb|EFK53499.1| DNA primase [Corynebacterium genitalium ATCC 33030] Length = 639 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 125/651 (19%), Positives = 251/651 (38%), Gaps = 44/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + I++++G+YV PF DEKTPSFH ++G+ Sbjct: 5 RIPDSDIEAIRERANIADIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPARGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SF+ + SF E+V+ +A G + ++ + L+ Sbjct: 61 YHCFSTGKGGDVFSFMMEMEQLSFPEAVEAVAEEIGYHINYQGGSTGARDVKPGTRARLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ L+ + +L +RG D I F+ GYAPD +L +HL +KGF Sbjct: 121 AANKAAHEFYREQLETPEAEPGRRFLLDRGFDKDTIYHFECGYAPDGWDTLTKHLLRKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +++ EAGL D+FR RL++PI+ G VI FG R L +++ KY+N+ Sbjct: 181 DAQELQEAGL--STMGRRGPIDKFRRRLLWPIKDVAGNVIGFGARKLFDDDNMGKYMNTQ 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T+L+HK K L+ A + ++VEGY DV+++ AG+ V++ Sbjct: 239 DTMLYHKSKVLFGLDLAKKNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVAA 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + + ++ ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGKDHMSIIRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQQFTG---QSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G +A L+ +P+ + + + ++ S +TP+ R + Sbjct: 346 AVAPEGMDPCDLRMAKGDSAVRNLVASRVPMFEFVIESLLKDYSLDTPEGRLQALRRTVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + I+D L+ Y++ + + ++ ++ E K + + + Sbjct: 406 VVAQIRDTPLQTEYARQLAGWVGWPDPNEVIRQVRQEAKNPSNKGNKRSAWENATPAASD 465 Query: 466 -----LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + + + +P + + + + + + Sbjct: 466 GGSGAPGAPAFQVPNPQDPRLWAQREAIKVALQYPEAAGSYFDGINPDAFTDPAYRAVRD 525 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + ++ + E Y Sbjct: 526 AMAKVGGAAN----AGASESAGPAWIANVAAEMVDVTGRNFVSELAVEEIHAADPSAYAD 581 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + + Q +++ Q+ ++ + L S L + ++ Sbjct: 582 SVLSRLQEVRVGNQIAQLKSQLQRMRPSDDEMAYNALFSDLVALEQARREL 632 >gi|315645988|ref|ZP_07899109.1| DNA primase [Paenibacillus vortex V453] gi|315278749|gb|EFU42063.1| DNA primase [Paenibacillus vortex V453] Length = 605 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 154/631 (24%), Positives = 279/631 (44%), Gaps = 37/631 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P D I+++L I + + +YV ++ CPFH EKTPSF + Sbjct: 7 NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120 +YC+ C G+ + F + G SF E+V+ +A + LP + + LI Sbjct: 62 FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E++ +H LKN YL RG++ I+ F++GYAPD +L + L ++ F Sbjct: 122 NELSAKLYHFLLKNTEHGTEAMKYLRSRGMNDKVIDQFQIGYAPDRWDTLVQFLSKRSFD 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ + GLL DRFR R++FPI G+VIAF GR L KYLNSPET Sbjct: 182 LKEMEKGGLLSARHEQEGYLDRFRGRIMFPIHDRNGKVIAFAGRIL-GDGQPKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +LF+K + LYN A ++K S I+L EGY DV+S +AG+Q+ V+++G Sbjct: 241 LLFNKSRILYNLHQAKTSIRK----------SRQILLFEGYGDVISSWEAGLQSGVATMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q+ ++ ++ +V+ +DGD G+ AA K I + G RV L++ G DP Sbjct: 291 TSLTENQVAIMKSMADEVVVIYDGDKAGMAAALKVIPM---LEGVGLRVRIALVNEGMDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +IR +G F ++ ++ +N D + I + Sbjct: 348 DDYIRKFGAERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLNSST 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R Y + + L ++ + + +N +++++ + R + L Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMENGDNKEKRWNNGRHKKGRQSAPTL 467 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + L + ++ + + ++L++ + + K Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + +L+ V + A E N+ + ++ L ++ R+ + Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + ++++ + G+ + A + S + + Q Sbjct: 575 QKKEEMIKAERSGDFMRAAQIASEIIALERQ 605 >gi|292486904|ref|YP_003529774.1| DNA primase [Erwinia amylovora CFBP1430] gi|292900701|ref|YP_003540070.1| DNA primase [Erwinia amylovora ATCC 49946] gi|291200549|emb|CBJ47678.1| DNA primase [Erwinia amylovora ATCC 49946] gi|291552321|emb|CBA19365.1| DNA primase [Erwinia amylovora CFBP1430] gi|312170974|emb|CBX79233.1| DNA primase [Erwinia amylovora ATCC BAA-2158] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 178/629 (28%), Positives = 278/629 (44%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DFF SL YL +RG+ ++ F +G+AP + + Sbjct: 119 LMTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL +++VEGYMDV++L Q GV V+SLG Sbjct: 237 EIFHKGRQLYGLYEALK----------NYPEPGKLLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +PD RA+L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLFDTLMPQVDLRSPDGRAQLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + K K + Sbjct: 407 LRIYLRQELGNKLGILDDSQLDKLLPRQAESAKAVAQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ LI +P + + + L+ L S V ++ + Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFVELVSTCVAHPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + D + Q L R+ EE+ Sbjct: 506 LYRGTKFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA G AE+ L ++ + Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKH 581 >gi|28867766|ref|NP_790385.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000] gi|213967689|ref|ZP_03395836.1| DNA primase [Pseudomonas syringae pv. tomato T1] gi|301382749|ref|ZP_07231167.1| DNA primase [Pseudomonas syringae pv. tomato Max13] gi|302130709|ref|ZP_07256699.1| DNA primase [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851001|gb|AAO54080.1| DNA primase [Pseudomonas syringae pv. tomato str. DC3000] gi|213927465|gb|EEB61013.1| DNA primase [Pseudomonas syringae pv. tomato T1] Length = 652 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A++F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446 LR Q + + + Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468 Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498 + N + D + + + + + P+ E A L TL++HP + Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 ++ + + ++ +L L + ++ R G LL+ L + Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 W T+ +L+ +R R L + + E +A Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631 Query: 619 SILHEVHIQ 627 L E+ + Sbjct: 632 IQLRELLNR 640 >gi|293449404|ref|ZP_06663825.1| DNA primase [Escherichia coli B088] gi|291322494|gb|EFE61923.1| DNA primase [Escherichia coli B088] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ VV+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYVVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|27364090|ref|NP_759618.1| DNA primase [Vibrio vulnificus CMCP6] gi|27360208|gb|AAO09145.1| DNA primase [Vibrio vulnificus CMCP6] Length = 587 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 290/632 (45%), Gaps = 57/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDPRVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C G+ + F+ F+E+++ LA+ G+ +P + + Sbjct: 60 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSTNTKFSQAPQASSSQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ + F+ + LK + K YL RG+ ++ F +GY D +R++ Sbjct: 120 RSLYDLMASISQFYRNQLKLSSGKIAIDYLKNRGLSGEIVQKFGIGYIADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q ++E ++ G+LI+ + YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 180 QHPEAQEMLVAGGMLIENEKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T L++L++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 VASLGTSTTGDHLQVLFRQTSTVVCCYDGDRAGREAAWRAMENALPYLNDGRQLKFMFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS+IR +GK FE+ + ++PL + ++ + ++ + A+L I+ Sbjct: 348 DGEDPDSYIRQFGKAQFEQQVANAMPLSEFMFSSLAQQVDMSSKEGMAKLTTLAVPLIDK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + LR Y + + RL + ++ + + + + + P + L ++ + Sbjct: 408 VPGGTLRLYLRELLGRRLGLVDERQLQQLID------RQGQTDKKPQPHRELKRTPM--- 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ LI P+ Q L L + + Sbjct: 459 ----------REVVALLIQRPSFSQLVPDLTPVKHLTIPGL-SLLIEVLERCQARPNITT 507 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + +LL +L + + + + Q + +Q Sbjct: 508 GQLLESWRGSQNEQLLSRLAGWEIPLDD-DNEEDIFLDSLDKILAQCV---------EKQ 557 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + + + L++++ ++ Sbjct: 558 IENLQAKDRSIGLSAD--ERRELMALMLDLKA 587 >gi|26249648|ref|NP_755688.1| DNA primase [Escherichia coli CFT073] gi|91212495|ref|YP_542481.1| DNA primase [Escherichia coli UTI89] gi|117625378|ref|YP_855495.1| DNA primase [Escherichia coli APEC O1] gi|218560153|ref|YP_002393066.1| DNA primase [Escherichia coli S88] gi|227887790|ref|ZP_04005595.1| DNA primase [Escherichia coli 83972] gi|237706171|ref|ZP_04536652.1| DNA primase [Escherichia sp. 3_2_53FAA] gi|300973233|ref|ZP_07172072.1| DNA primase [Escherichia coli MS 45-1] gi|301048096|ref|ZP_07195134.1| DNA primase [Escherichia coli MS 185-1] gi|78099121|sp|Q8FDG5|PRIM_ECOL6 RecName: Full=DNA primase gi|26110076|gb|AAN82262.1|AE016767_22 DNA primase [Escherichia coli CFT073] gi|91074069|gb|ABE08950.1| DNA primase [Escherichia coli UTI89] gi|115514502|gb|ABJ02577.1| DNA primase [Escherichia coli APEC O1] gi|218366922|emb|CAR04693.1| DNA primase [Escherichia coli S88] gi|226899211|gb|EEH85470.1| DNA primase [Escherichia sp. 3_2_53FAA] gi|227835186|gb|EEJ45652.1| DNA primase [Escherichia coli 83972] gi|294489668|gb|ADE88424.1| DNA primase [Escherichia coli IHE3034] gi|300300016|gb|EFJ56401.1| DNA primase [Escherichia coli MS 185-1] gi|300410813|gb|EFJ94351.1| DNA primase [Escherichia coli MS 45-1] gi|307555173|gb|ADN47948.1| DNA primase [Escherichia coli ABU 83972] gi|307625319|gb|ADN69623.1| DNA primase [Escherichia coli UM146] gi|315288820|gb|EFU48218.1| DNA primase [Escherichia coli MS 110-3] gi|315295034|gb|EFU54371.1| DNA primase [Escherichia coli MS 153-1] gi|323951400|gb|EGB47275.1| DNA primase [Escherichia coli H252] gi|323957773|gb|EGB53487.1| DNA primase [Escherichia coli H263] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|163802688|ref|ZP_02196579.1| DNA primase [Vibrio sp. AND4] gi|159173576|gb|EDP58396.1| DNA primase [Vibrio sp. AND4] Length = 586 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 175/639 (27%), Positives = 296/639 (46%), Gaps = 68/639 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRNFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C V G+ + F+ F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLEFVEAIEELASYLGLDVPREQRSGSGGQFKSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L ++ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRSLYDVMGSIAQFYRNQLKQPASKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ + YDRFR R++FPI RG+VI FGGR L + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENEKGNR-YDRFRGRIMFPIHDRRGRVIGFGGRVL-GDGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ R I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPPR----------ILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS+IR +GK AFE+ + ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYIRKHGKQAFEQQVEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASGL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D Y Q + ++L + E +G+ +++ + + + L Sbjct: 408 IDKIPDP-----YFQELLEKL-------LDERTGFDNRLRRSRN---------KTINTRL 446 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K K+ +RE ++ LI +P+ Q + L L+ + + Sbjct: 447 QPHKEIKRTPMRE--VIALLIQNPSYAQMVPDLSSVRELSIPGL-SLFVDVLDKCEAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +Q E ++ A+ + G + + L E+ + Sbjct: 554 EKQIENLQ---AKARSVG---LSTEEMRELQELMKDLKA 586 >gi|315297746|gb|EFU57023.1| DNA primase [Escherichia coli MS 16-3] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSPTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|312963433|ref|ZP_07777915.1| DNA primase [Pseudomonas fluorescens WH6] gi|311282239|gb|EFQ60838.1| DNA primase [Pseudomonas fluorescens WH6] Length = 656 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 180/671 (26%), Positives = 293/671 (43%), Gaps = 77/671 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQMKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESGRPHKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A DF+ +LK+ + K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAADFYRQALKSHPQRKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLYKHLSSDTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLL++ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKAMIDAGLLVENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E ++ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHMKRLFRVVPSVLFCFDGDQAGRNAAWRALEATLSSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + + PL D +++ TE + + +A + I+ + Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLTEEADPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------- 441 LR Q + + + Sbjct: 409 NLRTLMRQRLLEITGLSGEAVSQLVHSAPQDAPPAYDPGMDYDAMPDYADFHQPHEAYAP 468 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAIL 498 + + + D+K S+ + + + P EA + L TLI+HP + Sbjct: 469 QQEWTPKKPGAGGKKWDKKPWSKNGKRGDRDEAYAPRTPVAVEAPMLIALRTLIHHPQLA 528 Query: 499 QEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + N ++ L + ++ R G LLK L + Sbjct: 529 GKVE---SADHFANESNSYAQVLIALIEAVQKNPKLNSIQLMARWHGTEQGRLLKVLAEK 585 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 W + + L+ + + L + + A++ Sbjct: 586 E-----WLIDGDNLEQQFLDTITR-LSAGQHTQTLDELIKRARQ------PGLSADEQIQ 633 Query: 617 LISILHEVHIQ 627 + + ++ Q Sbjct: 634 IAKQMRDLLKQ 644 >gi|193062012|ref|ZP_03043108.1| DNA primase [Escherichia coli E22] gi|192932232|gb|EDV84830.1| DNA primase [Escherichia coli E22] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIRLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|110806953|ref|YP_690473.1| DNA primase [Shigella flexneri 5 str. 8401] gi|110616501|gb|ABF05168.1| DNA primase [Shigella flexneri 5 str. 8401] Length = 581 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDRQVERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|146313108|ref|YP_001178182.1| DNA primase [Enterobacter sp. 638] gi|145319984|gb|ABP62131.1| DNA primase [Enterobacter sp. 638] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 295/628 (46%), Gaps = 52/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPTQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ SLK + + YL++RG+ I F +GYAP ++ + Sbjct: 119 LMEGLNSFYQQSLKQSAAEPARQYLNQRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPRR----------LLVVEGYMDVVALAQFDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGREAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + + PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKEAFEARMEVAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKLSENGAVRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + + L L+S L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPELAPQVPSLVGLNHEKLPGL-ALFSELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L +W + +I + + +L + +L ++EE+ Sbjct: 506 HYRGTKESATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T +E+ L + E+ + Sbjct: 556 AR--ERTHGLSSEERRELWMLNQELARK 581 >gi|296269170|ref|YP_003651802.1| DNA primase [Thermobispora bispora DSM 43833] gi|296091957|gb|ADG87909.1| DNA primase [Thermobispora bispora DSM 43833] Length = 645 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 161/656 (24%), Positives = 260/656 (39%), Gaps = 44/656 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + PI+ +IG+++ NA G+ CPFH+EKTPSF+ S+G+ Sbjct: 4 RISDEDIALVRERSPIAEVIGEHIQL----RNAGGGNLKGLCPFHEEKTPSFNVTPSRGY 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 YYCF C GD ++F+ + SF E+V+RLA AG+ L V +++ +T L+ Sbjct: 60 YYCFGCGEGGDVITFIRKIENLSFTEAVERLAQRAGIRLRYVQGGYVPGREQGERTRLLA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L +L RG D E F +GYAP + +L HL +GF+ Sbjct: 120 AHRAAAEFYAEQLTTPEAAPGRRFLAGRGFDRADAERFGVGYAPAAWDALSRHLIARGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++I+ GL + DRFR RLI+PIR G VI FG R L + KYLN+PE Sbjct: 180 VQELIKGGLAKE--GRRGPVDRFRGRLIWPIRDIVGDVIGFGARKLHDSDDGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV++ AGV V++ Sbjct: 238 TPLYRKSQVLYGIDLAKREIAK----------RGQVVIVEGYTDVMACHLAGVPTAVATC 287 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E +++L + ++ FDGD+ G RAA +A + + Sbjct: 288 GTAFGEEHIKILRRLLFDQAEFRGEVIFTFDGDEAGQRAALRAFQEEQRFVT---QTFVA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A LI +PL + +T + R Sbjct: 345 VQPDGLDPCELRLERGDAAVRDLIASRVPLFAFAIRSVLSRYDLDTNEGRLAALDAAAPI 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ-------------KYITEHSGYGRYWKKNARHRD 458 + IKD LR Y+ + L + + + G G Sbjct: 405 VASIKDPGLRKAYAVDLDRWLGFMDEGFVLRRVQQAAARQRAARRRGPGHAQPPAEPAAR 464 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 G + + + EA L I PA+L ++ L + E L Sbjct: 465 PSGAPPGGARRQQARPNPADPAVRLEAEALKLAIQRPALLGPEFDALGAEVFTVPEHAAL 524 Query: 519 WSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + + +E RL + + D L A+ D + Sbjct: 525 YEVITAAGGTAAAGPGGQEWVDRLLQGAAAAGSAESDLTGLVTRLAVEAPFADAED-EER 583 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 Y A+ + + R ++ ++ ++ E ++ L L + Q + Sbjct: 584 YGTAVLAGLQEIAVGRAIARVKSRLQRLNPVEEQQEYNRLFGELIALEQQRRVLRE 639 >gi|194431628|ref|ZP_03063919.1| DNA primase [Shigella dysenteriae 1012] gi|194419984|gb|EDX36062.1| DNA primase [Shigella dysenteriae 1012] gi|320179313|gb|EFW54271.1| DNA primase [Shigella boydii ATCC 9905] gi|332086770|gb|EGI91907.1| DNA primase [Shigella dysenteriae 155-74] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SLK YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLPQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|15833203|ref|NP_311976.1| DNA primase [Escherichia coli O157:H7 str. Sakai] gi|16130962|ref|NP_417538.1| DNA primase [Escherichia coli str. K-12 substr. MG1655] gi|24114366|ref|NP_708876.1| DNA primase [Shigella flexneri 2a str. 301] gi|30064414|ref|NP_838585.1| DNA primase [Shigella flexneri 2a str. 2457T] gi|74313601|ref|YP_312020.1| DNA primase [Shigella sonnei Ss046] gi|89109836|ref|AP_003616.1| DNA primase [Escherichia coli str. K-12 substr. W3110] gi|110643310|ref|YP_671040.1| DNA primase [Escherichia coli 536] gi|157156565|ref|YP_001464527.1| DNA primase [Escherichia coli E24377A] gi|168754038|ref|ZP_02779045.1| DNA primase [Escherichia coli O157:H7 str. EC4401] gi|168769475|ref|ZP_02794482.1| DNA primase [Escherichia coli O157:H7 str. EC4486] gi|168773277|ref|ZP_02798284.1| DNA primase [Escherichia coli O157:H7 str. EC4196] gi|168781201|ref|ZP_02806208.1| DNA primase [Escherichia coli O157:H7 str. EC4076] gi|168785941|ref|ZP_02810948.1| DNA primase [Escherichia coli O157:H7 str. EC869] gi|168797658|ref|ZP_02822665.1| DNA primase [Escherichia coli O157:H7 str. EC508] gi|170082609|ref|YP_001731929.1| DNA primase [Escherichia coli str. K-12 substr. DH10B] gi|170680884|ref|YP_001745338.1| DNA primase [Escherichia coli SMS-3-5] gi|193067246|ref|ZP_03048214.1| DNA primase [Escherichia coli E110019] gi|194427677|ref|ZP_03060224.1| DNA primase [Escherichia coli B171] gi|194439800|ref|ZP_03071866.1| DNA primase [Escherichia coli 101-1] gi|195937212|ref|ZP_03082594.1| DNA primase [Escherichia coli O157:H7 str. EC4024] gi|208811926|ref|ZP_03253255.1| DNA primase [Escherichia coli O157:H7 str. EC4045] gi|208820632|ref|ZP_03260952.1| DNA primase [Escherichia coli O157:H7 str. EC4042] gi|209396560|ref|YP_002272539.1| DNA primase [Escherichia coli O157:H7 str. EC4115] gi|209920538|ref|YP_002294622.1| DNA primase [Escherichia coli SE11] gi|217327354|ref|ZP_03443437.1| DNA primase [Escherichia coli O157:H7 str. TW14588] gi|218555636|ref|YP_002388549.1| DNA primase [Escherichia coli IAI1] gi|218691371|ref|YP_002399583.1| DNA primase [Escherichia coli ED1a] gi|218696771|ref|YP_002404438.1| DNA primase [Escherichia coli 55989] gi|218706691|ref|YP_002414210.1| DNA primase [Escherichia coli UMN026] gi|238902177|ref|YP_002927973.1| DNA primase [Escherichia coli BW2952] gi|253772098|ref|YP_003034929.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038235|ref|ZP_04872293.1| DNA primase [Escherichia sp. 1_1_43] gi|254163013|ref|YP_003046121.1| DNA primase [Escherichia coli B str. REL606] gi|254795017|ref|YP_003079854.1| DNA primase [Escherichia coli O157:H7 str. TW14359] gi|256019018|ref|ZP_05432883.1| DNA primase [Shigella sp. D9] gi|256024354|ref|ZP_05438219.1| DNA primase [Escherichia sp. 4_1_40B] gi|260845820|ref|YP_003223598.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009] gi|261228079|ref|ZP_05942360.1| DNA primase [Escherichia coli O157:H7 str. FRIK2000] gi|261254935|ref|ZP_05947468.1| DNA primase DnaG [Escherichia coli O157:H7 str. FRIK966] gi|291284445|ref|YP_003501263.1| DNA primase [Escherichia coli O55:H7 str. CB9615] gi|293406679|ref|ZP_06650605.1| DNA primase [Escherichia coli FVEC1412] gi|293412443|ref|ZP_06655166.1| DNA primase [Escherichia coli B354] gi|297518948|ref|ZP_06937334.1| DNA primase [Escherichia coli OP50] gi|298382420|ref|ZP_06992017.1| DNA primase [Escherichia coli FVEC1302] gi|300818833|ref|ZP_07099039.1| DNA primase [Escherichia coli MS 107-1] gi|300821661|ref|ZP_07101807.1| DNA primase [Escherichia coli MS 119-7] gi|300901449|ref|ZP_07119534.1| DNA primase [Escherichia coli MS 198-1] gi|300905792|ref|ZP_07123526.1| DNA primase [Escherichia coli MS 84-1] gi|300917394|ref|ZP_07134060.1| DNA primase [Escherichia coli MS 115-1] gi|300923728|ref|ZP_07139753.1| DNA primase [Escherichia coli MS 182-1] gi|300931952|ref|ZP_07147249.1| DNA primase [Escherichia coli MS 187-1] gi|300937449|ref|ZP_07152275.1| DNA primase [Escherichia coli MS 21-1] gi|300950723|ref|ZP_07164611.1| DNA primase [Escherichia coli MS 116-1] gi|300958454|ref|ZP_07170593.1| DNA primase [Escherichia coli MS 175-1] gi|301021227|ref|ZP_07185259.1| DNA primase [Escherichia coli MS 196-1] gi|301021859|ref|ZP_07185822.1| DNA primase [Escherichia coli MS 69-1] gi|301301892|ref|ZP_07208026.1| DNA primase [Escherichia coli MS 124-1] gi|301325580|ref|ZP_07219048.1| DNA primase [Escherichia coli MS 78-1] gi|301644763|ref|ZP_07244738.1| DNA primase [Escherichia coli MS 146-1] gi|307139754|ref|ZP_07499110.1| DNA primase [Escherichia coli H736] gi|307310309|ref|ZP_07589957.1| DNA primase [Escherichia coli W] gi|309793631|ref|ZP_07688057.1| DNA primase [Escherichia coli MS 145-7] gi|331643764|ref|ZP_08344895.1| DNA primase [Escherichia coli H736] gi|331664679|ref|ZP_08365585.1| DNA primase [Escherichia coli TA143] gi|331669910|ref|ZP_08370755.1| DNA primase [Escherichia coli TA271] gi|331674605|ref|ZP_08375365.1| DNA primase [Escherichia coli TA280] gi|331679142|ref|ZP_08379814.1| DNA primase [Escherichia coli H591] gi|332280116|ref|ZP_08392529.1| DNA primase [Shigella sp. D9] gi|78101809|sp|P0ABS6|PRIM_ECO57 RecName: Full=DNA primase gi|78101810|sp|P0ABS5|PRIM_ECOLI RecName: Full=DNA primase gi|78101811|sp|P0ABS7|PRIM_SHIFL RecName: Full=DNA primase gi|147755|gb|AAA24600.1| DNA primase [Escherichia coli] gi|882589|gb|AAA89146.1| CG Site No. 847; alternate gen name dnaP, parB [Escherichia coli str. K-12 substr. MG1655] gi|1617301|emb|CAA23531.1| DNA primase [Escherichia coli] gi|1789447|gb|AAC76102.1| DNA primase [Escherichia coli str. K-12 substr. MG1655] gi|13363422|dbj|BAB37372.1| DNA primase [Escherichia coli O157:H7 str. Sakai] gi|24053530|gb|AAN44583.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 301] gi|30042671|gb|AAP18395.1| DNA biosynthesis; DNA primase [Shigella flexneri 2a str. 2457T] gi|73857078|gb|AAZ89785.1| DNA primase [Shigella sonnei Ss046] gi|85675867|dbj|BAE77117.1| DNA primase [Escherichia coli str. K12 substr. W3110] gi|110344902|gb|ABG71139.1| DNA primase [Escherichia coli 536] gi|157078595|gb|ABV18303.1| DNA primase [Escherichia coli E24377A] gi|169890444|gb|ACB04151.1| DNA primase [Escherichia coli str. K-12 substr. DH10B] gi|170518602|gb|ACB16780.1| DNA primase [Escherichia coli SMS-3-5] gi|187770989|gb|EDU34833.1| DNA primase [Escherichia coli O157:H7 str. EC4196] gi|189001079|gb|EDU70065.1| DNA primase [Escherichia coli O157:H7 str. EC4076] gi|189358475|gb|EDU76894.1| DNA primase [Escherichia coli O157:H7 str. EC4401] gi|189361484|gb|EDU79903.1| DNA primase [Escherichia coli O157:H7 str. EC4486] gi|189374115|gb|EDU92531.1| DNA primase [Escherichia coli O157:H7 str. EC869] gi|189379826|gb|EDU98242.1| DNA primase [Escherichia coli O157:H7 str. EC508] gi|192959203|gb|EDV89638.1| DNA primase [Escherichia coli E110019] gi|194414185|gb|EDX30460.1| DNA primase [Escherichia coli B171] gi|194421248|gb|EDX37269.1| DNA primase [Escherichia coli 101-1] gi|208733203|gb|EDZ81890.1| DNA primase [Escherichia coli O157:H7 str. EC4045] gi|208740755|gb|EDZ88437.1| DNA primase [Escherichia coli O157:H7 str. EC4042] gi|209157960|gb|ACI35393.1| DNA primase [Escherichia coli O157:H7 str. EC4115] gi|209759238|gb|ACI77931.1| DNA primase [Escherichia coli] gi|209759240|gb|ACI77932.1| DNA primase [Escherichia coli] gi|209759242|gb|ACI77933.1| DNA primase [Escherichia coli] gi|209759244|gb|ACI77934.1| DNA primase [Escherichia coli] gi|209759246|gb|ACI77935.1| DNA primase [Escherichia coli] gi|209913797|dbj|BAG78871.1| DNA primase [Escherichia coli SE11] gi|217319721|gb|EEC28146.1| DNA primase [Escherichia coli O157:H7 str. TW14588] gi|218353503|emb|CAU99621.1| DNA primase [Escherichia coli 55989] gi|218362404|emb|CAR00028.1| DNA primase [Escherichia coli IAI1] gi|218428935|emb|CAR09738.1| DNA primase [Escherichia coli ED1a] gi|218433788|emb|CAR14705.1| DNA primase [Escherichia coli UMN026] gi|222034798|emb|CAP77540.1| DNA primase [Escherichia coli LF82] gi|226839859|gb|EEH71880.1| DNA primase [Escherichia sp. 1_1_43] gi|238860841|gb|ACR62839.1| DNA primase [Escherichia coli BW2952] gi|242378616|emb|CAQ33403.1| DNA primase, subunit of primosome [Escherichia coli BL21(DE3)] gi|253323142|gb|ACT27744.1| DNA primase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974914|gb|ACT40585.1| DNA primase [Escherichia coli B str. REL606] gi|253979070|gb|ACT44740.1| DNA primase [Escherichia coli BL21(DE3)] gi|254594417|gb|ACT73778.1| DNA primase [Escherichia coli O157:H7 str. TW14359] gi|257760967|dbj|BAI32464.1| DNA primase DnaG [Escherichia coli O103:H2 str. 12009] gi|260447899|gb|ACX38321.1| DNA primase [Escherichia coli DH1] gi|281602455|gb|ADA75439.1| DNA primase [Shigella flexneri 2002017] gi|290764318|gb|ADD58279.1| DNA primase [Escherichia coli O55:H7 str. CB9615] gi|291426685|gb|EFE99717.1| DNA primase [Escherichia coli FVEC1412] gi|291469214|gb|EFF11705.1| DNA primase [Escherichia coli B354] gi|298277560|gb|EFI19076.1| DNA primase [Escherichia coli FVEC1302] gi|299881585|gb|EFI89796.1| DNA primase [Escherichia coli MS 196-1] gi|300314895|gb|EFJ64679.1| DNA primase [Escherichia coli MS 175-1] gi|300355151|gb|EFJ71021.1| DNA primase [Escherichia coli MS 198-1] gi|300397875|gb|EFJ81413.1| DNA primase [Escherichia coli MS 69-1] gi|300402391|gb|EFJ85929.1| DNA primase [Escherichia coli MS 84-1] gi|300415351|gb|EFJ98661.1| DNA primase [Escherichia coli MS 115-1] gi|300419998|gb|EFK03309.1| DNA primase [Escherichia coli MS 182-1] gi|300449960|gb|EFK13580.1| DNA primase [Escherichia coli MS 116-1] gi|300457484|gb|EFK20977.1| DNA primase [Escherichia coli MS 21-1] gi|300460375|gb|EFK23868.1| DNA primase [Escherichia coli MS 187-1] gi|300525799|gb|EFK46868.1| DNA primase [Escherichia coli MS 119-7] gi|300528618|gb|EFK49680.1| DNA primase [Escherichia coli MS 107-1] gi|300842873|gb|EFK70633.1| DNA primase [Escherichia coli MS 124-1] gi|300847631|gb|EFK75391.1| DNA primase [Escherichia coli MS 78-1] gi|301076917|gb|EFK91723.1| DNA primase [Escherichia coli MS 146-1] gi|306909204|gb|EFN39699.1| DNA primase [Escherichia coli W] gi|308122588|gb|EFO59850.1| DNA primase [Escherichia coli MS 145-7] gi|309703497|emb|CBJ02837.1| DNA primase [Escherichia coli ETEC H10407] gi|312947637|gb|ADR28464.1| DNA primase [Escherichia coli O83:H1 str. NRG 857C] gi|313648182|gb|EFS12628.1| DNA primase [Shigella flexneri 2a str. 2457T] gi|315062374|gb|ADT76701.1| DNA primase [Escherichia coli W] gi|315137659|dbj|BAJ44818.1| DNA primase [Escherichia coli DH1] gi|315256979|gb|EFU36947.1| DNA primase [Escherichia coli MS 85-1] gi|315617139|gb|EFU97748.1| DNA primase [Escherichia coli 3431] gi|320176469|gb|EFW51519.1| DNA primase [Shigella dysenteriae CDC 74-1112] gi|320182889|gb|EFW57763.1| DNA primase [Shigella flexneri CDC 796-83] gi|320189417|gb|EFW64076.1| DNA primase [Escherichia coli O157:H7 str. EC1212] gi|320640140|gb|EFX09712.1| DNA primase [Escherichia coli O157:H7 str. G5101] gi|320645438|gb|EFX14447.1| DNA primase [Escherichia coli O157:H- str. 493-89] gi|320650749|gb|EFX19206.1| DNA primase [Escherichia coli O157:H- str. H 2687] gi|320656127|gb|EFX24039.1| DNA primase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661817|gb|EFX29225.1| DNA primase [Escherichia coli O55:H7 str. USDA 5905] gi|320666968|gb|EFX33944.1| DNA primase [Escherichia coli O157:H7 str. LSU-61] gi|323163116|gb|EFZ48949.1| DNA primase [Escherichia coli E128010] gi|323168089|gb|EFZ53776.1| DNA primase [Shigella sonnei 53G] gi|323173689|gb|EFZ59318.1| DNA primase [Escherichia coli LT-68] gi|323183649|gb|EFZ69046.1| DNA primase [Escherichia coli 1357] gi|323377038|gb|ADX49306.1| DNA primase [Escherichia coli KO11] gi|323935932|gb|EGB32227.1| DNA primase [Escherichia coli E1520] gi|323946864|gb|EGB42882.1| DNA primase [Escherichia coli H120] gi|323960999|gb|EGB56616.1| DNA primase [Escherichia coli H489] gi|323971811|gb|EGB67036.1| DNA primase [Escherichia coli TA007] gi|324008870|gb|EGB78089.1| DNA primase [Escherichia coli MS 57-2] gi|324018216|gb|EGB87435.1| DNA primase [Escherichia coli MS 117-3] gi|324119674|gb|EGC13555.1| DNA primase [Escherichia coli E1167] gi|326337769|gb|EGD61603.1| DNA primase [Escherichia coli O157:H7 str. 1125] gi|326347334|gb|EGD71059.1| DNA primase [Escherichia coli O157:H7 str. 1044] gi|331037235|gb|EGI09459.1| DNA primase [Escherichia coli H736] gi|331058610|gb|EGI30591.1| DNA primase [Escherichia coli TA143] gi|331062823|gb|EGI34737.1| DNA primase [Escherichia coli TA271] gi|331068699|gb|EGI40094.1| DNA primase [Escherichia coli TA280] gi|331073207|gb|EGI44530.1| DNA primase [Escherichia coli H591] gi|332102468|gb|EGJ05814.1| DNA primase [Shigella sp. D9] gi|332345020|gb|AEE58354.1| DNA primase DnaG [Escherichia coli UMNK88] gi|332752739|gb|EGJ83124.1| DNA primase [Shigella flexneri K-671] gi|332753123|gb|EGJ83507.1| DNA primase [Shigella flexneri 4343-70] gi|332754328|gb|EGJ84694.1| DNA primase [Shigella flexneri 2747-71] gi|332765315|gb|EGJ95539.1| DNA primase [Shigella flexneri 2930-71] gi|332999826|gb|EGK19410.1| DNA primase [Shigella flexneri K-272] gi|332999964|gb|EGK19547.1| DNA primase [Shigella flexneri K-218] gi|333014867|gb|EGK34212.1| DNA primase [Shigella flexneri K-304] gi|333015694|gb|EGK35033.1| DNA primase [Shigella flexneri K-227] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|329925848|ref|ZP_08280577.1| DNA primase [Paenibacillus sp. HGF5] gi|328939594|gb|EGG35942.1| DNA primase [Paenibacillus sp. HGF5] Length = 605 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 151/631 (23%), Positives = 275/631 (43%), Gaps = 37/631 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P D I+++L I + + +YV ++ CPFH EKTPSF + Sbjct: 7 NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120 +YC+ C G+ + F + G SF E+V+ +A + LP + + LI Sbjct: 62 FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E++ +H LKN YL RG++ I+ F++GYAPD +L + L ++ F Sbjct: 122 YELSAKLYHFLLKNTEHGTEAMKYLRARGMNDKMIDQFQIGYAPDRWDTLVQFLTKRSFD 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ GLL DRFR R++FPI G+VIAF GR L KYLNSPET Sbjct: 182 LKEMERGGLLSARHEQEGYLDRFRGRIMFPIHDRSGKVIAFAGRIL-GDGQPKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +LF+K + LYN A ++K I+L EGY DV+S +AG+ N V+++G Sbjct: 241 LLFNKSRTLYNLHQAKTSIRKL----------RQILLFEGYGDVISSWEAGLHNGVATMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q+ ++ ++ +V+ +DGD G+ AA K I + G +V L++ G DP Sbjct: 291 TSLTENQVAIMKSVAEEVVVVYDGDKAGMAAASKVIPM---LEGVGLKVRIALVNEGMDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +IR +G F ++ ++ +N D + I + Sbjct: 348 DDYIRKFGPERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLNSST 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R Y + + L ++ + + + +++++ + R + L Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMGDGDNKEKRWNNGRHKKGRQPAPAL 467 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + L + ++ + + ++L++ + + K Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + +L+ V + A E N+ + ++ L ++ R+ + Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + ++++ + G+ + A + S + + Q Sbjct: 575 QKKEEMIKAERSGDFLRAAQIASEIIALERQ 605 >gi|331017644|gb|EGH97700.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 652 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 182/669 (27%), Positives = 296/669 (44%), Gaps = 77/669 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A++F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-------------------------------- 446 LR Q + + + Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468 Query: 447 -----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAIL 498 + N + D + + + + + P+ E A L TL++HP + Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVEPPMQAALRTLLHHPELA 528 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 ++ + + ++ +L L + ++ R G LL+ L + Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 W T+ +L+ +R R L + + E +A Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631 Query: 619 SILHEVHIQ 627 L E+ + Sbjct: 632 IQLRELLNR 640 >gi|320201976|gb|EFW76551.1| DNA primase [Escherichia coli EC4100B] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 302/631 (47%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ A G E+ L ++ E+ + Sbjct: 554 L---IARERAHGLSNEERLELWTLNQELAKK 581 >gi|300977466|ref|ZP_07173929.1| DNA primase [Escherichia coli MS 200-1] gi|300308324|gb|EFJ62844.1| DNA primase [Escherichia coli MS 200-1] gi|324011985|gb|EGB81204.1| DNA primase [Escherichia coli MS 60-1] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|302064028|ref|ZP_07255569.1| DNA primase [Pseudomonas syringae pv. tomato K40] Length = 652 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 181/669 (27%), Positives = 293/669 (43%), Gaps = 77/669 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A++F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LNAASEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEAALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHS---------------------------------- 444 LR Q + + + Sbjct: 409 NLRILMRQRLSEITGLTGEAVSQLVQSAPADAPPSYDPYVDYDAMPDFADYQPQGGYEAQ 468 Query: 445 ------GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 G +K + G + + ++ A L TL++HP + Sbjct: 469 QEWTPKKAGGPNQKKWDNNKSWGKKGKRQEFEPRTPRVPTAVDPPMQAALRTLLHHPELA 528 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 ++ + + ++ +L L + ++ R G LL+ L + Sbjct: 529 EKV-ENASHFAAEDQSNAQLLVALIEARQKNPSLRSLQLIARWHGTEQGRLLRALAEKE- 586 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 W T+ +L+ +R R L + + E +A Sbjct: 587 ----WLIETDNLEQQFFDTIT-SLSARQRERSLDHLISKARQ----------TELSAEEK 631 Query: 619 SILHEVHIQ 627 L E+ + Sbjct: 632 IQLRELLNR 640 >gi|331684718|ref|ZP_08385310.1| DNA primase [Escherichia coli H299] gi|284923094|emb|CBG36187.1| DNA primase [Escherichia coli 042] gi|331078333|gb|EGI49539.1| DNA primase [Escherichia coli H299] Length = 581 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLI-------PKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|11993458|gb|AAG42747.1|AF299295_1 DNA primase [Zymomonas mobilis] Length = 628 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 180/636 (28%), Positives = 300/636 (47%), Gaps = 44/636 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +F+ +L I +S+LIG+ V R ++ ACCPFH+EKTPSF+ ND KGFY Sbjct: 7 LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F++ G SF+++V+ LA AG+ +P +P ++ K L ++ Sbjct: 62 HCFGCGAHGDAIRFVTKTRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F L + YLD RGI + F LG+AP+ R L+ L + Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234 + + ++G + YDRFR RL+ PI+ RG++IAFGGR L S KYL Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRIIAFGGRRLESIEGGNSLPDNSPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF KG+ LYN A ++ R II+VEGY+DV+ L QAG+ Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+ LGTALTE+Q+ LW++ + +LCFDGD G +AA +A + L PG ++FV L Sbjct: 289 VAPLGTALTEHQIERLWRIEHKPILCFDGDSAGQKAAVRAAERALVQAHPGKTLSFVTLP 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD ++ GK+AFE+++ + L +L++ + +P+ RA L L Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFQASQIDPQSPEGRAALSKRLDELAAS 408 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +D+ + Y ++ + F WK + Q + + S L Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +S +L+ L +P ++++ + LA++ + +L+K L + + + Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLEXLAELAVTDPKLKKWRETLITAVISEPDLDR 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + I L ++ +D + + + L R L+ + Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++++++ + + K+ +H + Sbjct: 575 EQQLKQVFTEERLIADYAKSEAA----QALHRKRRA 606 >gi|254517370|ref|ZP_05129427.1| DNA primase [gamma proteobacterium NOR5-3] gi|219674208|gb|EED30577.1| DNA primase [gamma proteobacterium NOR5-3] Length = 634 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 180/651 (27%), Positives = 286/651 (43%), Gaps = 51/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I ++I + V + N Y A CPFHDEK+PSF N K F Sbjct: 4 RIPQSFIDDLLDRVDIVDVIDRRVKLKKTGKN-----YSARCPFHDEKSPSFSVNPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK----EKIQTDL 117 YYCF C G+ L FL F ++V+ LA AG+ + + + + E L Sbjct: 59 YYCFGCGAGGNALGFLMDYENIDFPQAVENLAGTAGLEVVREESRGQSSAAGGESPNKPL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E +T+F+ +LK +++ YL RG+ F LG+AP +LR L Sbjct: 119 YELMERSTEFYKDALKQHPNRQAAVDYLKNRGLTGLIARDFGLGFAPPGWDNLRSFLGDD 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++ + I AG+L+ D+ YDRFR+R++FPIR RG+VIAFGGR L + KYLNS Sbjct: 179 ETTQTRAITAGMLVKNDSG-RVYDRFRDRIVFPIRDRRGRVIAFGGRVL-GDDKPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +FHKG+ LY + A +K R II+VEGYMDV++L QAG+ V+ Sbjct: 237 PESPIFHKGRELYGLYEARRANRKLER----------IIVVEGYMDVIALAQAGISYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA + L ++++ P +V CFDGD+ G +AA +A+ L + G + F+ L G Sbjct: 287 TLGTATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDS +R G AF L+ ++PL + L++ + T + RA L I + Sbjct: 347 EDPDSLVRKDGTQAFLDLVQAAVPLEEFLFQSQAAGLDIGTMEGRASLSKRALPLIRILP 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYG--------------------RYWKKNARH 456 + R Q++ R + + Sbjct: 407 EGVYRELMFQSLAQRTGLELASLMKLELPPPEPPPATEAAPDEAYYASFDEAPPPDDGDW 466 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 Q + +L +AA+ L++ P++ A E Sbjct: 467 APVDDEEPSPRQREPLNQAPRAHATLTQAAI-ALLLHKPSVAS-LADAHALSALSGRE-G 523 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 +L + ++ + GELL +L Q R T+ Sbjct: 524 ELLKAIVELLQKRPESSTGMLLGHWHGSPEGELLAELAGQER-----LIPTDGIEAQFED 578 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++ +L R R++ + ++ + + + LI L ++ + Sbjct: 579 IMRRLSSLPLRQRIVE-EISGLKTRPYAQMTADDKARLPELIRALRDLDTR 628 >gi|148545674|ref|YP_001265776.1| DNA primase [Pseudomonas putida F1] gi|148509732|gb|ABQ76592.1| DNA primase [Pseudomonas putida F1] Length = 660 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 178/671 (26%), Positives = 295/671 (43%), Gaps = 81/671 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L++ K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QNVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + + PL D +++ + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439 LR +++ Q+ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHD 468 Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + G + + + + Q ++ A L T Sbjct: 469 YAPVHQEQAWKPNKGGSKKPWSDKPWDKNRKSGKPWQQRDEAPPRVPAPVEPPTLAALRT 528 Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L++HP + + + + E +L L + ++ R G Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LL+ L + W + +L+ +R R L + + + +++T++ Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637 Query: 609 GEAEKTAILIS 619 + + A+L Sbjct: 638 EKTQLLALLSR 648 >gi|167031435|ref|YP_001666666.1| DNA primase [Pseudomonas putida GB-1] gi|166857923|gb|ABY96330.1| DNA primase [Pseudomonas putida GB-1] Length = 660 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 179/671 (26%), Positives = 296/671 (44%), Gaps = 81/671 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L+N K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRNHPTRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + + PL D +++ + + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLSVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439 LR +++ Q+ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPTVSSVPDYDPGYDYDAMASYTPDYGDMPQHD 468 Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + G+ + + + Q ++ A L T Sbjct: 469 FAPVHQEQAWKPNKSGGKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRT 528 Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L++HP + + + E +L L + ++ R G Sbjct: 529 LLHHPLLAGRVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LL+ L + W + +L+ +R R L + + + +++T++ Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637 Query: 609 GEAEKTAILIS 619 + + A+L Sbjct: 638 EKTQLLALLSR 648 >gi|302185956|ref|ZP_07262629.1| DNA primase [Pseudomonas syringae pv. syringae 642] Length = 651 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLSGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|302391477|ref|YP_003827297.1| DNA primase [Acetohalobium arabaticum DSM 5501] gi|302203554|gb|ADL12232.1| DNA primase [Acetohalobium arabaticum DSM 5501] Length = 616 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 174/626 (27%), Positives = 289/626 (46%), Gaps = 34/626 (5%) Query: 1 MNY-PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y +FI + + I ++I Y + ++ N Y A CPFHDE+TPSF N K Sbjct: 1 MAYLNDEFIDKVRDNNDIIDVISDYTNLEKAGKN-----YKALCPFHDERTPSFMVNPEK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 Y+CF C V G+ +F+ + FIE+V+ LA G+ LP + ++++ Sbjct: 56 QLYHCFGCGVGGNVFNFMMDIENLDFIEAVEILAQRIGLSLPERKDSSTGESTTKSEIYE 115 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FF++ L + + YL +RGI I+ F+LGYAPDS L + LR+KG+ Sbjct: 116 IHNWAVKFFNYLLTETNQGSEAYEYLRQRGIKEETIDQFELGYAPDSWRGLFDFLRKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S ++I +AGL+I YDRFRNR+IF I + RGQ I FGGR KYLNSP+ Sbjct: 176 SADRIQQAGLIIPQKKGKGYYDRFRNRIIFTINNLRGQAIGFGGRV-VDDSHPKYLNSPQ 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K LY A +++ S +++VEGY DV++ Q G++N+V+SL Sbjct: 235 TPVFNKKNILYGLARAKREIKR----------SGSVVIVEGYTDVITGHQFGIENIVASL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q RLL + + R+ + +DGD G A + ++ G V V L +D Sbjct: 285 GTSLTKSQARLLRRYADRVYIAYDGDVAGENATLRGFNI---LKNTGLEVYVVNLPVDQD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD IR GK FE L+ E++ L++ + +R +++ E + + I+++ Sbjct: 342 PDEVIRSQGKEEFELLLSEAVSLIEFKLESLLTDRDLTKIEQKVEAVDDIMPVLAGIENE 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + I RL + + + + R+ + + + + Sbjct: 402 IKQAEYIKKIAGRLDVETGVIKSRLKKFQQDVSEQDRNYRDRNNKFKSDSKVDSEAESDT 461 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E LL +I IL EL + +E Q +F EE+ Sbjct: 462 QFQF-EKKLLELMIKDTQILNLVKAELDSDEFITDEYQSAAELIFDI----DNSDWEELI 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ +++ + V ++ +GY + + + L +KE + Sbjct: 517 NKVNSAEIRQMITE----VSLGNYQKEEINEYQLEEAKGYIKKI----KEYQLKMKKERL 568 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + +I Q A + K L+ EV Sbjct: 569 DAEIEQHEASRDFAKVNQLLRERQEV 594 >gi|261405622|ref|YP_003241863.1| DNA primase [Paenibacillus sp. Y412MC10] gi|261282085|gb|ACX64056.1| DNA primase [Paenibacillus sp. Y412MC10] Length = 605 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 151/631 (23%), Positives = 275/631 (43%), Gaps = 37/631 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P D I+++L I + + +YV ++ CPFH EKTPSF + Sbjct: 7 NIPDDVIEEVLAKSDIVDTVSKYVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRL 120 +YC+ C G+ + F + G SF E+V+ +A + LP + + LI Sbjct: 62 FYCYGCGKGGNAIKFRMEIEGFSFPEAVKTMAEENDISLPEGQGVPVIPRNPEKERLIEA 121 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E++ +H LKN YL RG++ I+ F++GYAPD +L + L ++ F Sbjct: 122 YELSAKLYHFLLKNTEHGTEAMKYLRARGMNDKMIDQFQIGYAPDRWDTLVQFLTKRSFD 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ GLL DRFR R++FPI G+VIAF GR L KYLNSPET Sbjct: 182 LKEMERGGLLSARHEQEGYLDRFRGRIMFPIHDRSGKVIAFAGRIL-GDGQPKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +LF+K + LYN A ++K I+L EGY DV+S +AG+ N V+++G Sbjct: 241 LLFNKSRTLYNLHQAKTSIRKL----------RQILLFEGYGDVISSWEAGLHNGVATMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q+ ++ ++ +V+ +DGD G+ AA K I + G +V L++ G DP Sbjct: 291 TSLTENQVAIMKSVAEEVVVVYDGDKAGMAAASKVIPM---LEGVGLKVRIALVNEGMDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +IR +G F ++ ++ +N D + I + Sbjct: 348 DDYIRKFGPERFRHVVETAVSTTKFKLIYLKKNHILLEEDGKIAYAKEALPIIAVLDSST 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R Y + + L ++ + + + +++++ + R + L Sbjct: 408 EREVYLRELSSELHLSYESLKQDCNLLRQSMQKKMGDGDNKEKRWNNGRHKKGRQPAPAL 467 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + L + ++ + + ++L++ + + K Sbjct: 468 LPAYHAAERRLLSLMLQDAEAARYVGDRLGE-AFNIEDHAAIAAYLYAFYAQGKSPDISR 526 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + +L+ V + A E N+ + ++ L ++ R+ + Sbjct: 527 FMSSLQD-------DRLEMTVSSIMMMEAPAEWNVQVLDDCIREVLKFPQQ-----REID 574 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + ++++ + G+ + A + S + + Q Sbjct: 575 QKKEEMIKAERSGDFLRAAQIASEIIALERQ 605 >gi|218701837|ref|YP_002409466.1| DNA primase [Escherichia coli IAI39] gi|218371823|emb|CAR19678.1| DNA primase [Escherichia coli IAI39] Length = 581 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L + I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSMLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|83859450|ref|ZP_00952971.1| DNA primase [Oceanicaulis alexandrii HTCC2633] gi|83852897|gb|EAP90750.1| DNA primase [Oceanicaulis alexandrii HTCC2633] Length = 612 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 196/591 (33%), Positives = 295/591 (49%), Gaps = 14/591 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P F ++ I S LIG+ V R+ ++ PF E+TPSF ND KG Sbjct: 1 MAIPDGFKDEIKARIRPSELIGRTVALKRQGR-----EFVGLSPFKKERTPSFFVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ GD ++L G SF+E+++ LA AG+ +P ++ + K+E+ + L+ Sbjct: 56 FYHCFASQEHGDIFTWLQKTQGLSFMEAIEALAQEAGLEVPRMEQRDPKQEERRKTLLDW 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 I +A D+F SL + YL+ RG+ +E F LG+APD+R L L QKG + Sbjct: 116 IALAQDYFARSLFAPEGEEARIYLERRGLSRSDMERFGLGFAPDNRRGLTRALIQKGATA 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ EAGL I ++ YDRFR R++FPI+ +R +++AFGGR +SK KYLNSPET Sbjct: 176 QELSEAGLSILPEDGGEPYDRFRGRVMFPIKDARDRLVAFGGRAMSKEVRAKYLNSPETE 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LY + A + K +I+ EGYMDV++ +AG+ V+ LGT Sbjct: 236 LFHKGSLLYRYPEARAFAHDPKVKARG------LIVAEGYMDVIAFARAGLGQAVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QLRLLW+ P V+C DGD G RAA A + L L PG + FV L G+DPD Sbjct: 290 ALTENQLRLLWRAGPEPVVCLDGDAAGTRAAALAAERALELLEPGRTLRFVFLPDGQDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G A + I ++ PL+D+LW+RE E + PD RA +K + IKD + Sbjct: 350 DLLREQGAQALKDAIADARPLIDVLWRREVELEPLDDPDRRAGFRKRIKALVARIKDPDI 409 Query: 421 RYYYSQAIRDRLQQLFQKYITE-HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y R++ LF + G+ R ++ + + + LV + K Sbjct: 410 KAEYRAEFDQRIETLFGRAPQAGFRAEGQRGGYGGRAAGRRFNALQPPTAELVAQRKQKP 469 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P LLL +I +P I + + + L + + L L + + + Sbjct: 470 PPASARQLLLAVIEYPEIAEAEAETLLQMSFGT--LDSLRDAILDACFSGEPLPVGGLRD 527 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 L RGF L +L +EA+ + +++ A Y Sbjct: 528 ALSRRGFAPQLTRLAVDRSPMRASLGGSEADADSRLEAWRRLSASYMERVA 578 >gi|306816580|ref|ZP_07450712.1| DNA primase [Escherichia coli NC101] gi|305850145|gb|EFM50604.1| DNA primase [Escherichia coli NC101] Length = 581 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|66047867|ref|YP_237708.1| DNA primase [Pseudomonas syringae pv. syringae B728a] gi|63258574|gb|AAY39670.1| DNA primase [Pseudomonas syringae pv. syringae B728a] Length = 651 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 179/668 (26%), Positives = 288/668 (43%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQL---------------------------------------FQKY 439 LR Q + + ++ Sbjct: 409 NLRILMRQRLTEITGLTGEAVSHLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + G + ++ A L TL++HP + + Sbjct: 469 QEWTQKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|283836398|ref|ZP_06356139.1| DNA primase [Citrobacter youngae ATCC 29220] gi|291067772|gb|EFE05881.1| DNA primase [Citrobacter youngae ATCC 29220] Length = 581 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 295/630 (46%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL++RG+ S I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLMQPAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++LPL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMPKLAEN-------GASRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPGLAPLVPPLGALDSNKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + +I + + +L + +L ++EE Sbjct: 504 LEHYRGTNDAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T +E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSSEERRELWTLNQELAKK 581 >gi|323966595|gb|EGB62028.1| DNA primase [Escherichia coli M863] gi|327251852|gb|EGE63538.1| DNA primase [Escherichia coli STEC_7v] Length = 581 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKTAESSVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|82778396|ref|YP_404745.1| DNA primase [Shigella dysenteriae Sd197] gi|309785375|ref|ZP_07680006.1| DNA primase [Shigella dysenteriae 1617] gi|81242544|gb|ABB63254.1| DNA primase [Shigella dysenteriae Sd197] gi|308926495|gb|EFP71971.1| DNA primase [Shigella dysenteriae 1617] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNTATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|332998669|gb|EGK18265.1| DNA primase [Shigella flexneri VA-6] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R+IFPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVIFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTSGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|323188490|gb|EFZ73775.1| DNA primase [Escherichia coli RN587/1] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKQAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|331648867|ref|ZP_08349955.1| DNA primase [Escherichia coli M605] gi|281180120|dbj|BAI56450.1| DNA primase [Escherichia coli SE15] gi|330909132|gb|EGH37646.1| DNA primase [Escherichia coli AA86] gi|331042614|gb|EGI14756.1| DNA primase [Escherichia coli M605] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVAMSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|82545321|ref|YP_409268.1| DNA primase [Shigella boydii Sb227] gi|81246732|gb|ABB67440.1| DNA primase [Shigella boydii Sb227] gi|332092180|gb|EGI97258.1| DNA primase [Shigella boydii 3594-74] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ L+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQYLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|293416505|ref|ZP_06659144.1| DNA primase [Escherichia coli B185] gi|291431861|gb|EFF04844.1| DNA primase [Escherichia coli B185] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F+ A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGFYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|323978860|gb|EGB73940.1| DNA primase [Escherichia coli TW10509] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|241762242|ref|ZP_04760324.1| DNA primase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241373289|gb|EER62908.1| DNA primase [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 628 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 182/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +F+ +L I +S+LIG+ V R ++ ACCPFH+EKTPSF+ ND KGFY Sbjct: 7 LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F++ G SF+++V+ LA AG+ +P +P ++ K L ++ Sbjct: 62 HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F L + YLD RGI + F LG+AP+ R L+ L + Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234 + + ++G + YDRFR RL+ PI+ RG+VIAFGGR L S KYL Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRVIAFGGRRLESIEGGNSLPDNSPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF KG+ LYN A ++ R II+VEGY+DV+ L QAG+ Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+ LGTALTE+Q+ LW++ + +LCFDGD G +AA +A + L PG ++FV L Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQARPGKTLSFVTLP 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD ++ GK+AFE+++ + L +L++ E +P+ RA L L Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFEASQIDPRSPEGRAALSKRLDELAAS 408 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +D+ + Y ++ + F WK + Q + + S L Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +S +L+ L +P ++++ + LA++ + +L+K L + + + Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + I L ++ +D + + + L R L+ + Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++++++ + + K +H + Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606 >gi|260857196|ref|YP_003231087.1| DNA primase DnaG [Escherichia coli O26:H11 str. 11368] gi|260869818|ref|YP_003236220.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128] gi|257755845|dbj|BAI27347.1| DNA primase DnaG [Escherichia coli O26:H11 str. 11368] gi|257766174|dbj|BAI37669.1| DNA primase DnaG [Escherichia coli O111:H- str. 11128] gi|323154522|gb|EFZ40722.1| DNA primase [Escherichia coli EPECa14] gi|323178772|gb|EFZ64348.1| DNA primase [Escherichia coli 1180] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 171/598 (28%), Positives = 285/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L++L A E D +L ++ L++R++ Sbjct: 504 LEHYRGTNNAATLEKLSMWDDIAD--KNIAEQTFTDSLNHMFDSLLELRQEELIARER 559 >gi|71736150|ref|YP_272919.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556703|gb|AAZ35914.1| DNA primase [Pseudomonas syringae pv. phaseolicola 1448A] gi|320325996|gb|EFW82054.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076] Length = 651 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 180/668 (26%), Positives = 294/668 (44%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|324115355|gb|EGC09319.1| DNA primase [Escherichia fergusonii B253] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|315181194|gb|ADT88108.1| DNA primase [Vibrio furnissii NCTC 11218] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 63/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKVKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--------EKKEKIQ 114 +CF C V G+ + F+ F E+++ LA+ G+ +P + + + Sbjct: 60 HCFGCGVHGNAIDFMMEYERLEFPEAIEELASFLGLDVPREERSNGGFNKNTPRANSEEK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L L+ F+ LK + ++ YL RG+ ++ F +GY D +R++ Sbjct: 120 RNLYDLMGSIAQFYRQQLKVSSNRDAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q +++ ++ G+LI+ DN YDRFR R++FPIR RG+VI FGGR L + KYL Sbjct: 180 QSRHNQDMLVSGGMLIENDNGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + L + I++VEGYMDV++L Q G+ Sbjct: 238 NSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGIDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T L+LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS++R YGK AFE+ + E+ PL L+ + + +A LE IN Sbjct: 348 DGEDPDSYVRKYGKEAFEQQMHEAEPLSKYLFSNLLSQVNVGNNEGKAALEAMALPLINK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D+ L+ + + + +G + + + + P + + ++ + Sbjct: 408 IPDESLQDQLLKILEQK------------TGIYKKPSLPSDAKSRPQPHKEIKRTPM--- 452 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ L+ +P+ + L L + + + + Sbjct: 453 ----------REVIALLLQNPSYADMVPDLTSVKGLAIPGL-SLLVEVLENCRQYPHIST 501 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + LL +L + E + + + Q + +Q Sbjct: 502 GQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQ 551 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + + AE+ L++++ E+ Sbjct: 552 IENLQAK--ERSVGLSAEEKRELVALMLELKA 581 >gi|331654665|ref|ZP_08355665.1| DNA primase [Escherichia coli M718] gi|331048047|gb|EGI20124.1| DNA primase [Escherichia coli M718] Length = 581 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 301/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ H YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSAHQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|169830687|ref|YP_001716669.1| DNA primase [Candidatus Desulforudis audaxviator MP104C] gi|169637531|gb|ACA59037.1| DNA primase [Candidatus Desulforudis audaxviator MP104C] Length = 599 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 170/625 (27%), Positives = 275/625 (44%), Gaps = 40/625 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++++ I ++I ++V ++R N Y CPFH EKTPSF ++ + Sbjct: 12 IPETLVEEVFSRTDILDVISEHVRLEKRGRN-----YVGLCPFHQEKTPSFTVTPARQMF 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C V G+ FL SF ESV+ LA GV +PV + +E+ R+ E Sbjct: 67 YCFGCGVGGNVFRFLMLKENLSFPESVRFLAGRVGVDIPVT---VSPREEKYERYYRINE 123 Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A DFF L+ A R YL++RGI + F+LG+AP +L L KG + Sbjct: 124 WARDFFRRRLEAGADAGRARSYLEKRGITPEIRDQFQLGFAPSEWQALTGFLEHKGCTPR 183 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++E GL YDRFRNR+IFP+ ++ G+VI FGGR L KYLNSPET + Sbjct: 184 ELVELGLA--ARGDRGYYDRFRNRIIFPVWNASGRVIGFGGRAL-DDSQPKYLNSPETPV 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG+ LY A ++ R ++VEGY+D ++ Q G++N V+SLGT+ Sbjct: 241 FHKGQVLYALHLARPAMRDEGRA----------VIVEGYLDAIAAHQFGIRNAVASLGTS 290 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT Q RLL + + +++ +D D G+ AA + +DL G RV + + G+DPD Sbjct: 291 LTREQGRLLMRYAMEVLIAYDADAAGVAAAIRGLDL---LQELGCRVRVISVPDGKDPDD 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R G + +L + L++ + T + + + + + R Sbjct: 348 FLREEGVEGWVRLTQSATSLLEYKLVQIGARTGTATAAGKLAALREIMPNLRALSSEVER 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q L ++ +E Y R+ + M + L K S+ Sbjct: 408 EEGFQIAARALGLTWETIRSE---YVRFAANTQVKWANSDNIAKNMHNILKLTKPSQVRE 464 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E LL ++ +P L+ QEL + + + Q+++ ++ F P + L Sbjct: 465 KTETGLLRLVLQNPPFLETVKQELGEYVFRDARYQRIYDAWLRRR-DRPGFEPALLANYL 523 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L L T ++R + KR Q E+ Sbjct: 524 EDDDQQVL----------TALMGLETPGEGENLRAELSAYIKAVKRLDH-KEQLRELLND 572 Query: 602 IAQVTAKGEAEKTAILISILHEVHI 626 +A G+ ++ L+ + E+ Sbjct: 573 VAAAEKAGDRDRVNRLMRKIQELSK 597 >gi|283856512|ref|YP_163357.2| DNA primase [Zymomonas mobilis subsp. mobilis ZM4] gi|283775517|gb|AAV90246.2| DNA primase [Zymomonas mobilis subsp. mobilis ZM4] Length = 628 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 180/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +F+ +L I +S+LIG+ V R ++ ACCPFH+EKTPSF+ ND KGFY Sbjct: 7 LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F++ G SF+++V+ LA AG+ +P +P ++ K L ++ Sbjct: 62 HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F L + YLD RGI + F LG+AP+ R L+ L + Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234 + + ++G + YDRFR RL+ PI+ RG++IAFGGR L S KYL Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRIIAFGGRRLESIEGGNSLPDNSPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF KG+ LYN A ++ R II+VEGY+DV+ L QAG+ Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+ LGTALTE+Q+ LW++ + +LCFDGD G +AA +A + L PG ++FV L Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQAHPGKTLSFVTLP 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD ++ GK+AFE+++ + L +L++ + +P+ RA L L Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFQASQIDPQSPEGRAALSKRLDELAAS 408 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +D+ + Y ++ + F WK + Q + + S L Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLPTP 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +S +L+ L +P ++++ + LA++ + +L+K L + + + Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + I L ++ +D + + + L R L+ + Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++++++ + + K +H + Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606 >gi|215488397|ref|YP_002330828.1| DNA primase [Escherichia coli O127:H6 str. E2348/69] gi|215266469|emb|CAS10907.1| DNA primase [Escherichia coli O127:H6 str. E2348/69] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL FIE+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFIETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|146281107|ref|YP_001171260.1| DNA primase [Pseudomonas stutzeri A1501] gi|145569312|gb|ABP78418.1| DNA primase [Pseudomonas stutzeri A1501] Length = 650 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 182/661 (27%), Positives = 294/661 (44%), Gaps = 70/661 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++G + + N Y A CPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRSDIVEVVGSRIQLKKTGKN-----YSALCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P D K + ++ + + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPREDSGRKHKPRQPVDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A D++ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARQANRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + S PL D +++ +E + + +A L I I Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIPGN 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYI-------------------------------------T 441 LR Q + + + Sbjct: 409 NLRALMRQRLAEITGLNGEALQHMAAAPASAPSSTPTSDDYTYYDASPAYGEPDHFEPPE 468 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTLINHPAILQE 500 R K + + + +G + L TL++HP + Q+ Sbjct: 469 PVQPQPRNGKPGKKEWKKDWKKNGQGPDLMPRGPRTPATVEPPALTTLRTLLHHPELAQK 528 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 ++++ +++ +L L + ++ R G LL+ L + Sbjct: 529 V-EDVSHFAAEDDTYAQLLVALLGTLQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLI 587 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILIS 619 + ++ Q + + R R+ E + ++ Q + E ++ L+S Sbjct: 588 ---------SADNLEQQFFDTINSLA-ARQRERRLESLLRKARQGELSAEEKDQLRNLLS 637 Query: 620 I 620 Sbjct: 638 R 638 >gi|15803608|ref|NP_289641.1| DNA primase [Escherichia coli O157:H7 EDL933] gi|25298043|pir||D85967 DNA biosynthesis, DNA primase [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517648|gb|AAG58200.1|AE005536_1 DNA biosynthesis; DNA primase [Escherichia coli O157:H7 str. EDL933] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 175/630 (27%), Positives = 294/630 (46%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNXCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L A E D +L ++ L++R++ Sbjct: 504 LEHYRGTNNAATLEKLSMWDDIAD--KNIAEQTFTDSXNHMFDSLLELRQEELIARER-- 559 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 T E+ L ++ E+ + Sbjct: 560 --------THGLSNEERLELWTLNQELAKK 581 >gi|218550315|ref|YP_002384106.1| DNA primase [Escherichia fergusonii ATCC 35469] gi|218357856|emb|CAQ90500.1| DNA primase [Escherichia fergusonii ATCC 35469] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|325498619|gb|EGC96478.1| DNA primase [Escherichia fergusonii ECD227] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESSVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLKLRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|296104730|ref|YP_003614876.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059189|gb|ADF63927.1| DNA primase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 298/628 (47%), Gaps = 52/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SLK++ + YL++RG+ I F +GYAP ++ + Sbjct: 119 LMDGLNSFYQQSLKHSAAEPARQYLNKRGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQANAEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTKNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I+ + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKQAENGTVRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + L L+S L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPELAPQVPSLAGLNHEKLPGLG-LFSELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L +W + +I + + +L + +L ++EE+ Sbjct: 506 HYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T +E+ L I E+ + Sbjct: 556 AR--ERTHGLSSEERRELWMINQELAKK 581 >gi|237729994|ref|ZP_04560475.1| DNA primase [Citrobacter sp. 30_2] gi|226908600|gb|EEH94518.1| DNA primase [Citrobacter sp. 30_2] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 296/630 (46%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYETGSGPSQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL + YL++RG+ S I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLMQSAATPARQYLEKRGLSSDVITRFAIGFAPPGWDNVLKRFGGNAEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLVDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++LPL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMPKLAEN-------GASRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPGLAPLVPPLGALDSNKL--PGLG-LFRELVNTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + +I + + +L + +L ++EE Sbjct: 504 LEHYRGTNDAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T +E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSSEERRELWTLNQELAKK 581 >gi|218780917|ref|YP_002432235.1| DNA primase [Desulfatibacillum alkenivorans AK-01] gi|218762301|gb|ACL04767.1| DNA primase [Desulfatibacillum alkenivorans AK-01] Length = 599 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 152/628 (24%), Positives = 261/628 (41%), Gaps = 46/628 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P D I + + I ++I Y+ + N + CPFH EKTPSF N + F++ Sbjct: 6 PDDQISHVRNSVNIVDVISDYMVLKKAGNN-----FVGLCPFHAEKTPSFSVNPDRQFFH 60 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRLI 121 CF C GD F+ +F E++ LAA AG+ L + P+ +K + L Sbjct: 61 CFGCGEGGDVFDFVMRQNNLTFPEALASLAARAGIELAPRKMTPQQQKIVAERDALYAAN 120 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A DFF SL + + YL +R + +E F LG+APD +L L+ KG Sbjct: 121 DFARDFFVKSLNAPQASQAREYLKKREMPQEVLETFMLGFAPDEWRALSGFLQGKGVPSH 180 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + +AGLL+ + YDRFRNR+IFPI G++ FGGR + KYLNSP+T + Sbjct: 181 RAEKAGLLVHKEGGGNVYDRFRNRIIFPIHDISGRIAGFGGRVM-DDALPKYLNSPQTPI 239 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 + K + LY + A +K + +VEGY DVL+L G++N V++ GTA Sbjct: 240 YDKKRMLYGLYQARQECRK----------TGVAFMVEGYFDVLALYAHGIRNAVATCGTA 289 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ +R++ + ++VL FD D G+ AA K++ L + ++L G DPDS Sbjct: 290 LSPDHVRIIKGYAKKVVLVFDSDTAGINAARKSLPLFEAEK---VQAKVLVLPAGHDPDS 346 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R +G F + ++ L + + + +A + +K + + D R Sbjct: 347 FVRDFGAKDFLEAAENRQDMIPFLMESAIAR-HGLSIEGKANVVAEIKEQVAAVSDGVTR 405 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + I ++L + + K P Sbjct: 406 SLYIKQIAEKLGVDEAAVLDAVRDAAKTRPKR----------LPGTVHEEQAKPAEPAPD 455 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E A+L ++ P + ++ + +N ++ L + I Sbjct: 456 RMETAILQMMVRCPECAPKVAEKRLIKYFSSNRVRALGLRILEFIQAGGDPEGAGIMSLA 515 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E+ LL ++ L + ++Q++ E++++ Sbjct: 516 VEQDDRSLLARILAHDDPLELPGCMA------IIDQFEQSITRRNH--------AELDRR 561 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629 I Q +G + L+ +E+ + Sbjct: 562 IQQAQTEGHHDLALRLLVEKNELLKALQ 589 >gi|312968591|ref|ZP_07782800.1| DNA primase [Escherichia coli 2362-75] gi|312286809|gb|EFR14720.1| DNA primase [Escherichia coli 2362-75] Length = 581 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL FIE+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFIETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L + KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNNTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|283787202|ref|YP_003367067.1| DNA primase [Citrobacter rodentium ICC168] gi|282950656|emb|CBG90328.1| DNA primase [Citrobacter rodentium ICC168] Length = 582 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 177/625 (28%), Positives = 294/625 (47%), Gaps = 52/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDTRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL++RG+ S I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLMQPAATPARQYLEKRGLSSEVIARFAIGFAPPGWDNVLKRFGGNSEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNADPQR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++LPL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKAAFEARMEQALPLSAFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKLSENGPSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L++ L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPELAPLVPPLGGLDHNKLPGLG-LFAELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L LW + +I + + +L + +L ++EE+ Sbjct: 506 HYRGTKDAATLEKL-------SLWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555 Query: 600 KQIAQVTAKGEAEKTAILISILHEV 624 + + T +E+ L ++ E+ Sbjct: 556 AR--ERTHGLSSEERRELWTLSQEL 578 >gi|260773556|ref|ZP_05882472.1| DNA primase [Vibrio metschnikovii CIP 69.14] gi|260612695|gb|EEX37898.1| DNA primase [Vibrio metschnikovii CIP 69.14] Length = 587 Score = 380 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 174/636 (27%), Positives = 292/636 (45%), Gaps = 65/636 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----------K 112 +CF C V G+ + FL F E+++ LA+ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFLMEYERLEFPEAIEELASYLGLEVPREERYNNSQSASNSTPRVNND 119 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L L+ F+ LK + YL +RG+ + F +GY PD +R + Sbjct: 120 EKRTLYDLLSNIAQFYRQQLKTPAGRGAIEYLKDRGLSGDIAQQFGIGYVPDEWDLIRRN 179 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 Q ++E ++ G+LI+ S YDRFR R++FPIR RG+VI FGGR + G + K Sbjct: 180 FGQHPQAQEMLVTGGMLIEN-ESGKRYDRFRGRVMFPIRDRRGRVIGFGGRVIGNG-TPK 237 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET +FHKGK LY + + + + I++VEGYMDV++L Q GV Sbjct: 238 YLNSPETPIFHKGKELYGLYEVMQAHRDPV----------QILVVEGYMDVVALAQYGVD 287 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V+SLGTA T L+LL++ + +V C+DGD G AA++A++ L +L GN + F+ Sbjct: 288 YAVASLGTATTGDHLQLLFRQTNTVVCCYDGDRAGREAAWRALENALSYLKSGNILKFLF 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKN 410 L GEDPDS+IR +GK FE + + PL L++ E N T + ++ L Sbjct: 348 LPDGEDPDSYIRKHGKENFEHAVQHAKPLSSYLFENLIETHKLNLGTVEGKSTLRTLANE 407 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 IN I D + Q + ++L +L ++ ++ P + L ++ Sbjct: 408 LINKIPDIGFQ----QELDEKLDKLTGFM------SHGKQRRTQPTSERPQPHKELKRTP 457 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + ++ L+ +P+ + + + L L + + + + Sbjct: 458 M-------------REVIALLVQNPSYAEMVPELSSVKHLAIPGLSLLVN-VVENCQQHP 503 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + ++ + LL +L + E + + + Q + Sbjct: 504 HITTGQLLEHWRNNEHEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV-------- 554 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + + + ++ LI+++ E+ Sbjct: 555 -EKQIENLQAK--ERSVGLSTDEKRELIALMLELKA 587 >gi|172087762|ref|YP_205635.2| DNA primase [Vibrio fischeri ES114] gi|171902350|gb|AAW86747.2| DNA primase [Vibrio fischeri ES114] Length = 587 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 293/632 (46%), Gaps = 57/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI +LL I ++I V ++ N Y ACCPFH+EK+PSF + K FY Sbjct: 5 IPRSFIDELLNRHDIVDIIDARVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + FL F+E+++ LA++ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFNAPSSGPTANSEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ + F+ LK+A + YL +RG+ ++ F +GY D ++ + Sbjct: 120 RSLYDLMGGISQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + S++ ++ G+LI+ DN YDRFR R++FPIR RG+VI FGGR + +G + KYL Sbjct: 180 RDKASQDALVSGGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + AL ++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQYGVDYA 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTA T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 VASLGTATTGDHMQLLFRPTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPD++IR YGK AFE+ + + L++ +++ + +T + +A+L I+ Sbjct: 348 DGEDPDTYIRQYGKEAFEQEVANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + LR Y + + L L + + + + +R+ Q + + Sbjct: 408 VPGGTLRLYLREQLGKTLGILDESQLQQLI-----------SKQGAVEPKRIAQPEIKRT 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + ++ L+ +P + Q + L L+ L + Sbjct: 457 AM--------REVITLLLQNPELAQLVPDLESVKEIPLPGL-SLFLQLLESCRHNPHITT 507 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + +LL +L + + + Q + +Q Sbjct: 508 GLLLEHWRGDKNEKLLSRLAAWELPID-QDNIQDVFMDSLDSVLAQCIN---------QQ 557 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + T E+ L++++ E+ Sbjct: 558 IESLQTK--ERTLGLSVEEKRELLALMLELKA 587 >gi|148979374|ref|ZP_01815480.1| DNA primase [Vibrionales bacterium SWAT-3] gi|145961810|gb|EDK27103.1| DNA primase [Vibrionales bacterium SWAT-3] Length = 583 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 176/632 (27%), Positives = 293/632 (46%), Gaps = 61/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116 +CF C V G+ + F+ F+E+++ LA+ G+ +P E + + + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLEFVEAIEELASFLGLDVPREQRSGEISTAPRANTEQKRN 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+ + F+ LK A +K YL RG+ ++ F +GY D +R++ Q+ Sbjct: 120 LYDLMGAISQFYRSQLKIAANKPAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + + KYLNS Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LY + L + +++VEGYMDV++L Q GV V+ Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQVLVVEGYMDVVALAQYGVDYSVA 287 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T +++L++ + ++ C+DGD G AA++A++ L +L GN + F+ L G Sbjct: 288 SLGTSTTGDHIQMLFRQTSTVICCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDG 347 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINH 414 EDPDS+IR +GK AFE+L+ + PL L+ E N T + ++ L H IN Sbjct: 348 EDPDSYIREHGKAAFEQLVQNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D Y Q + ++L + E +G+ ++ H P Sbjct: 408 IPDS-----YFQELLEKL-------LDERTGFDNQLRRARVHTQNPTPQPHKELKRTPM- 454 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ LI +P+ + L L+ + + Sbjct: 455 ----------REVIALLIQNPSYADMVPDLSSVKGLPLPGL-SLFVEVLDKCHAHPHINT 503 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + + LL +L + + + + Q + +Q Sbjct: 504 GQLLEHWRDNKHEALLSRLASWEIPLD-EDNQEDIFLDSLDKILAQCV---------EKQ 553 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + V AE+ L++++ ++ Sbjct: 554 IENLQAKARSVGLS--AEEKRELLALMLDLKA 583 >gi|323484376|ref|ZP_08089743.1| hypothetical protein HMPREF9474_01494 [Clostridium symbiosum WAL-14163] gi|323692388|ref|ZP_08106624.1| DNA primase [Clostridium symbiosum WAL-14673] gi|323402370|gb|EGA94701.1| hypothetical protein HMPREF9474_01494 [Clostridium symbiosum WAL-14163] gi|323503528|gb|EGB19354.1| DNA primase [Clostridium symbiosum WAL-14673] Length = 596 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 164/633 (25%), Positives = 274/633 (43%), Gaps = 43/633 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ + I ++I YV ++ N Y+ CPFH EK+PSF K Sbjct: 1 MYYPEEVIEEVRMRSDIVDVISGYVKLQKKGAN-----YFGLCPFHHEKSPSFSVAPQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C V G+ ++F+ SF E+V+ LA GV LP + + + ++ L+ Sbjct: 56 MYHCFGCGVSGNVITFVMEYENYSFREAVEMLAGRCGVKLPKMEYSKEAKAQADLKAALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++F++ LK + + + YL R + I F LGY+ + L +LR KG+ Sbjct: 116 EINKQAANYFYYQLKQPQGRAGYDYLQRRQLTDETIRRFGLGYSNKTSDDLYRYLRGKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + E GL+ S D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 DDTILKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A QK FI+L EGYMDV+S+ QAG N V+SL Sbjct: 233 TKLFDKSRNLYGLNYARTSRQK------------FILLCEGYMDVISMHQAGFTNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA+TE LL + + +++L +D D+ G++AA +AI + G + + +D Sbjct: 281 GTAMTEQHAALLKRYTEQVILTYDSDNAGVKAALRAIPI---LKNAGISAKVLNMRPYKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F++ G F+K I + E P+++ + + + Sbjct: 338 PDEFMKNLGPEEFKKRIENARNSFLFEIDVLKEGCDMQDPEQKTDFYNKAARKLLDFPEA 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y QA+ ++ T + G R R R+ G + K Sbjct: 398 LERDNYIQAVSREFFINYENLKTLVNQLGNRLGMGAGRTREPGGEESAANRPGAPAKKKE 457 Query: 478 KKPSLR--EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 K+ +R E LL LI P + + + + + ++ +F + Sbjct: 458 KEEGIRKSERLLLTWLIEEPELFDKIHGIIGPADFVKPLYREAAQMVFDGHEKGDVNPAS 517 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + G + L + L + + + +L +K Sbjct: 518 ILNHFIDDEGNYREVAALFNASLEESLSNEEQKKAFSE---------------TVLRIKK 562 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 ++ QI E +K + L +HI + Sbjct: 563 NSLDHQIRHAEGLDELQKLIRDQAELANLHISL 595 >gi|308174310|ref|YP_003921015.1| DNA primase [Bacillus amyloliquefaciens DSM 7] gi|307607174|emb|CBI43545.1| DNA primase [Bacillus amyloliquefaciens DSM 7] gi|328554256|gb|AEB24748.1| DNA primase [Bacillus amyloliquefaciens TA208] gi|328912653|gb|AEB64249.1| DNA primase [Bacillus amyloliquefaciens LL3] Length = 603 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 288/633 (45%), Gaps = 38/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEVVNQVQQSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF E+V LA + P + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDFPDDITIHSASRPESSGEHKMA 118 Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L N + + YL RG I+ F++GYA DS + + L+++G Sbjct: 119 EAHELLKKFYHHLLMNTKEGQEALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLKKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F EE++ +AGLLI ++ + +DRFRNR++FPI G V AF GR L + KY+NSP Sbjct: 179 FEEEQMEKAGLLIRREDGSGYFDRFRNRIMFPIHDHHGAVAAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF A ++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFHKARLPIRKEERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE +++L + ++LC+D D G A KA L +V ++ G Sbjct: 288 MGTSLTEEHVKILRRNVQEVILCYDSDKAGYEATLKAAGL---LQKADCKVRVCMMPDGL 344 Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIRTRGGEKFKTDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYMKEVLKEISALS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S Y R ++ + + R+ + + +L Sbjct: 405 GSLEQEMYVKQLASEFSLSVESLTEQLSIYARQNAPGDKNAEPQTRRARVTTKA-KRRRL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ ++++ + + ++ + + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRNVIKKVIERVG-FEFNIDGHRALAAYLYAVYEEGAEMTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + R+ + +LL + G+ E + ++ ++ L ++++ + + Sbjct: 523 LMARMQDEEISQLLSDI-------GMLQVNEELSEAELSDYVKKVLD-HRKWSM----IK 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E E + A + + K A L + ++ + Sbjct: 571 EKEAERADAERQKDFVKAASLAQEIVALNRSLK 603 >gi|254424595|ref|ZP_05038313.1| DNA primase catalytic core, N-terminal domain family [Synechococcus sp. PCC 7335] gi|196192084|gb|EDX87048.1| DNA primase catalytic core, N-terminal domain family [Synechococcus sp. PCC 7335] Length = 647 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 159/651 (24%), Positives = 283/651 (43%), Gaps = 35/651 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I ++ I +++ + V ++ D+ CPFHD+K+PSF + SK FY Sbjct: 6 IHPDTIDEVRQRADIVDIVSEQVVLKKQGK-----DFVGLCPFHDDKSPSFSVSPSKQFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118 YCFSC G+ FL L SF + V LA VP+ +P +++ + + L Sbjct: 61 YCFSCGAGGNAFKFLMELGQRSFADVVLDLARRYQVPVKTTEPAQQQELQRKLTLREQLY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176 ++ +A F+ H+L K+ Y DER + I F++GYAP+ +L + + QK Sbjct: 121 EIVAIAAKFYEHALFQPDGKQALAYLRDERLLSDETISHFQIGYAPEGWQTLYGYLVDQK 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + +AGL++ YDRFR+R++ PI ++ ++I FGGR L+ KYLNS Sbjct: 181 RYPVGLVEQAGLIVPRKEGTGYYDRFRDRIMVPIHDAQNRLIGFGGRGLTAEAKPKYLNS 240 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KGK LY A + K R I+VEGY DV++L AG+ N V+ Sbjct: 241 PETELFDKGKTLYGLDKAKAAIAKQDRA----------IVVEGYFDVIALHAAGITNAVA 290 Query: 297 SLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLL 353 SLGTAL Q++LL + + +I+ FD D G++AA +AI ++ ++ + + Sbjct: 291 SLGTALNAAQVKLLLRYTESKQIIFNFDADAAGIKAAERAIGEVAEMAYRGDVQLRVLNI 350 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD ++R + A+ L + +D + + D+ + + + ++ Sbjct: 351 PDGKDPDDYLRLHTAEAYIALTNSAPLWLDWQIDKIVSDADLKQADQFQQCSQSIVSLLS 410 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +I + R +Y + + Q + + + + R S + K Sbjct: 411 NIANADTRTHYIRYCAEIFSQGDGRIVPLLAENLLAQVRRKRRNPGNKQSTK-GDKRDTK 469 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFV-EQK 530 EAALL I+ P Q L D+ + + + LW + E++ Sbjct: 470 ILNRSFLEEAEAALLRIYIHCPEHRQTIIDGLDARDLGFSFSHHRALWRMVTELTEIEKR 529 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRF 588 + Q L + + L + + VR+ + A+A +R Sbjct: 530 EASASTMLQTLRNCS----AESTGPLSQVHHLLYLDEKTRLDTVREPLVIRAAIACLER- 584 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + ++ + + E + +I++++ +E ++ Sbjct: 585 NMCEKRYRRLLELWQAGDFSKTPETHTEYQKQIVAEKSRINELDREERSVD 635 >gi|327479260|gb|AEA82570.1| DNA primase [Pseudomonas stutzeri DSM 4166] Length = 650 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 182/661 (27%), Positives = 294/661 (44%), Gaps = 70/661 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++G + + N Y A CPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRSDIVEVVGSRIQLKKTGKN-----YSALCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P D K + ++ + + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLDFPQAVEELAKRAGMEVPREDSGRKHKPRQLVDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A D++ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LAAAADYYRQALKSHPTRKAAVEYLKGRGLSGVIARDFGLGFAPPGWDNLMKHLGGDALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKALIDAGLLIENAENGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARQANRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRKAAWRALEATLPNLQDGRRARFLFLPDGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + S PL D +++ +E + + +A L I I Sbjct: 349 DTLVRAEGTDAFRARIQQHSQPLADYFFQQLSEEADPRSLEGKAHLATLAAPLIEKIPGN 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYI-------------------------------------T 441 LR Q + + + Sbjct: 409 NLRALMRQRLTEITGLNGEALQHMAAAPVSAPSSTPTYDDYTYYDASPAYGEPDHFEPPE 468 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTLINHPAILQE 500 R K + + + +G + L TL++HP + Q+ Sbjct: 469 PVQPQPRNGKPGKKEWKKDWKKNGQGPDLMPRGPRTPATVEPPALTTLRTLLHHPELAQK 528 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 ++++ +++ +L L + ++ R G LL+ L + Sbjct: 529 V-EDVSHFAAEDDTYAQLLVALLGTLQKNPKLRSLQLIARWHGTDQGRLLRALAEKEWLI 587 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILIS 619 + ++ Q + + R R+ E + ++ Q + E ++ L+S Sbjct: 588 ---------SADNLEQQFFDTINSLA-ARQRERRLESLLRKARQGELSAEEKDQLRNLLS 637 Query: 620 I 620 Sbjct: 638 R 638 >gi|254784702|ref|YP_003072130.1| DNA primase [Teredinibacter turnerae T7901] gi|237684641|gb|ACR11905.1| DNA primase [Teredinibacter turnerae T7901] Length = 640 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 170/653 (26%), Positives = 274/653 (41%), Gaps = 48/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I ++ V + N Y ACCPFH+EKTPSF + K F Sbjct: 3 RIPQSFIDDLLNRLDIVEVVDHRVKLKKNGKN-----YAACCPFHEEKTPSFTVSPDKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 YYCF C G+ + FL SF+ESV+ LA AG+ +P P ++ Q +L + Sbjct: 58 YYCFGCGASGNAIGFLMEYERQSFVESVETLAKSAGLEVPREETPFHREQYARQKNLYDV 117 Query: 121 IEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E A+ ++ LK R + + YL RG+ H F LG+AP +L Sbjct: 118 LEKASSYYQLQLKENRGRDKAVRYLQNRGLSGHIARDFGLGFAPGGWDNLLTKYGLSEQD 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++ +GL+I YDRFRNR++FPI +RG+VI FGGR L KYLNSPET Sbjct: 178 IDLLVGSGLVIRRAEDDKLYDRFRNRIMFPILDNRGRVIGFGGRVL-DDSKPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + I++VEGYMDV++L Q G+ N V++LG Sbjct: 237 DVFHKGEELYGLYQARMANR----------NLEQILVVEGYMDVIALAQYGLTNAVATLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA E L+L +K + IV CFDGD G AA +A+ L + G ++ F+ L G+DP Sbjct: 287 TACGEEHLKLAFKHTQEIVFCFDGDAAGRTAAKRALMNSLTSMEDGRQIKFLFLPEGQDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G F + I PL D L+ E + + D RA + + Sbjct: 347 DTLVRQIGAERFAQQIKNGTPLEDFLFDVAAEGLNIQSMDGRARFSKICAPLLAQLPAGV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------- 471 R + R + + + Sbjct: 407 YRELMFTNLAKRTGLSSAALMELTHEKPQLPDAAPALPAVVDVEPPPVDVPEHSAATIYE 466 Query: 472 ----VKGKLSKKPSLREAALLL---------------TLINHPAILQEQYQELADIRYDN 512 + + + P +E L+++P ++Q+ N Sbjct: 467 HLEGTRFQGAPLPDEQEKQAFRKRTNVALNPVKAATLLLLDNPQLIQQVVLRPDADAAGN 526 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 EL +L L + + + ++L R + L + A+ Sbjct: 527 EELLRL-QNLIDYLQNRPNATFSTLLGFWGGAYGIDSQQELARMLATHELTRDSHLASFE 585 Query: 573 DVRQGYQQALALYKRFRLL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + + ++ L ++ E+++ + E ++ L+ ++ + Sbjct: 586 SAKVLSHAFAKINHQYHRLTHRQELEQLKSKGLANLNSEEKDRFRQLVQLIQK 638 >gi|26987130|ref|NP_742555.1| DNA primase [Pseudomonas putida KT2440] gi|60392932|sp|P0A118|PRIM_PSEPK RecName: Full=DNA primase gi|60392933|sp|P0A119|PRIM_PSEPU RecName: Full=DNA primase gi|24981761|gb|AAN66019.1|AE016231_2 DNA primase [Pseudomonas putida KT2440] gi|2281435|gb|AAC45508.1| DNA primase [Pseudomonas putida] gi|2731761|gb|AAC38072.1| DNA primase [Pseudomonas putida] Length = 660 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 179/671 (26%), Positives = 296/671 (44%), Gaps = 81/671 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L++ K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + S PL D +++ + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKY--------------------------------------- 439 LR +++ Q+ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPATSSMPDYDPGYDYDAMASYTPDYGDMPQHD 468 Query: 440 ---------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + G + + + + Q ++ A L T Sbjct: 469 YAPVHQEQAWKPNKGGSKKPWSDKPWDKNRKGGKPWQQRDEAPPRVPAPVEPPTLAALRT 528 Query: 491 LINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L++HP + + + + E +L L + ++ R G Sbjct: 529 LLHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGR 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LL+ L + W + +L+ +R R L + + + +++T++ Sbjct: 586 LLRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSE 637 Query: 609 GEAEKTAILIS 619 + + A+L Sbjct: 638 EKTQLLALLSR 648 >gi|325273044|ref|ZP_08139354.1| DNA primase [Pseudomonas sp. TJI-51] gi|324101817|gb|EGB99353.1| DNA primase [Pseudomonas sp. TJI-51] Length = 659 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 179/670 (26%), Positives = 296/670 (44%), Gaps = 80/670 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDNKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L++ K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRSHPTRKAAVDYLKGRGLSGEIARDFCLGFAPPGWDNLLKHLGADALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESALPNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + + PL D +++ + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHAQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQL-----------------------------------------FQ 437 LR +++ F+ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQAPAPSSMPDYDPGYDYDAMASYTPDYGDMPQFE 468 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLM------QSSLVKGKLSKKPSLREAALLLTL 491 + + K + P + Q ++ A L TL Sbjct: 469 PAPFQQEQAWKPNKGGGKKPWGDKPWDKNRKGGKNWQRDEAPPRVPAPVEPPTLAALRTL 528 Query: 492 INHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 ++HP + + + + E +L L + ++ R G L Sbjct: 529 LHHPLLAGKVEDA---SHFADEEHLYSQLLVALIEAAQKNPGLSSMQLIARWHGTEQGRL 585 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L+ L + W + +L+ +R R L + + + +++T++ Sbjct: 586 LRALAEKE-----WLIVADNLEQQFFDTIT-SLSARQRERSLEQLLR--KSRQSELTSEE 637 Query: 610 EAEKTAILIS 619 + + A+L Sbjct: 638 KTQLLALLSR 647 >gi|311895921|dbj|BAJ28329.1| putative DNA primase [Kitasatospora setae KM-6054] Length = 635 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 153/654 (23%), Positives = 271/654 (41%), Gaps = 42/654 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++ + +PI ++G YV CPFHDEK+ SF+ + KG Sbjct: 4 RIRDEDVQAVRAALPIDAVVGDYVQL----AAGGGAQLKGVCPFHDEKSASFYVHPGKGV 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 ++CF C GD ++FL + CSF E+V+R+AA AG+ L + + + +T L+ Sbjct: 60 FHCFGCGESGDTITFLMKIEHCSFAEAVERMAAQAGITLRYEEGGYSPRHQQGERTRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +F L + +L ERG D A + F +GYAP L LR +GF+ Sbjct: 120 AHKVAAAWFQEQLATPEAEIGRRFLAERGFDEAAAKHFGVGYAPVGWEHLVRFLRGRGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++I GL G DRFR RL++PIR S G V+ FG R L + ++ KYLN+PE Sbjct: 180 DKEISVGGLASQGQRG-GLIDRFRGRLVWPIRDSSGDVVGFGARRLREDDNGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + KS R ++VEGY DV++ AGV V++ Sbjct: 239 TPIYKKSNVLYGIDLARKEIAKSGRA----------VVVEGYTDVMACHLAGVTTAVATC 288 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E ++++ + V FDGD G +AA +A + R + Sbjct: 289 GTAFGEDHIKIIRRLLMDTSTYRGETVFTFDGDAAGQKAALRAFEDDQKFAA---RTSIA 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A L+ +PL + + +T + RA Sbjct: 346 ITPGGMDPCELRLAQGDEAVRTLVDNPVPLFEFALRSAVARHRVDTAEGRAAALEEAAGI 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR--------HRDQKGPS 463 I IKD+ +++ Y+ + + L ++++ W++ + R + P Sbjct: 406 IVKIKDRSIQHEYAVQLAGMVGILDERFVVNRIAQLARWQRENQQNGQQRTLRRPEAAPQ 465 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + E LL + HP ++ + + + + + + + Sbjct: 466 PARPERPAFRLNPRDPAQFVERELLKLALQHPDLVSPAFDQYGEDEFPTPPYRAVRRAIG 525 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + E + ++ L ++ + + Q Y Sbjct: 526 QAGGTAYGASLPDFTSAVREASPDDQVRGLVTELTVEPIRTRRK------ADQVYAGEFL 579 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R + + R+ +E+ + ++ + AE+ + S L + Q+ S+ A Sbjct: 580 VKLRLQAVDRRIDEVRAHLRRLGDRATAEQQHPVQSELWALQQYGQQLRSRGAA 633 >gi|197335161|ref|YP_002157047.1| DNA primase [Vibrio fischeri MJ11] gi|197316651|gb|ACH66098.1| DNA primase [Vibrio fischeri MJ11] Length = 587 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 171/632 (27%), Positives = 293/632 (46%), Gaps = 57/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI +LL I ++I V ++ N Y ACCPFH+EK+PSF + K FY Sbjct: 5 IPRSFIDELLNRHDIVDIIDARVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + FL F+E+++ LA++ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFNAPSSGPTANSEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ + F+ LK+A + YL +RG+ ++ F +GY D ++ + Sbjct: 120 RSLYDLMGGISQFYRSQLKSAANIHAINYLKDRGLSGEIVQKFGIGYIADEWELVKNNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + S++ ++ G+LI+ DN YDRFR R++FPIR RG+VI FGGR + +G + KYL Sbjct: 180 RDKASQDALVSGGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + AL ++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQYGVDYA 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTA T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 VASLGTATTGDHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPD++IR YGK AFE+ I + L++ +++ + +T + +A+L I+ Sbjct: 348 DGEDPDTYIRQYGKEAFEQEIANAESLINFMFRTLVDQIDTSTREGKAKLTTLAVPLIDK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + LR Y + + L L + + + + +RL Q + + Sbjct: 408 VPGGTLRLYLREQLGKTLGILDESQLQQLI-----------SKQGAVEPKRLAQPEIKRT 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + ++ L+ +P + Q + L L+ L + Sbjct: 457 AM--------REVITLLLQNPELAQLVPDLESVKEIPLPGL-SLFLQLLESCRHNPHITT 507 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + +LL +L + + + Q + +Q Sbjct: 508 GLLLEHWRGDKNEKLLSRLAAWELPID-QDNIQDVFMDSLDSVLAQCIN---------QQ 557 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + T E+ L++++ E+ Sbjct: 558 IESLQTK--ERTLGLSVEEKRELLALMLELKA 587 >gi|307546062|ref|YP_003898541.1| DNA primase [Halomonas elongata DSM 2581] gi|307218086|emb|CBV43356.1| DNA primase [Halomonas elongata DSM 2581] Length = 613 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 176/633 (27%), Positives = 289/633 (45%), Gaps = 35/633 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + ++G+ V R N CPFH EK+PSF + K FY Sbjct: 5 IPQRFIDDLLARTDVVEIVGERVKLKRAGRNHS-----GLCPFHQEKSPSFTVSADKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119 +CF C G+ L FL F E+V+ LAA G+ +P DP + +E+ + + + Sbjct: 60 HCFGCGAHGNALRFLMEYDRLRFPEAVEHLAARLGLEVPREGDDDPHQQARERKRKEGVN 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E+A FF LK + YLD+RG+ + F +G+AP ++R HL ++G S Sbjct: 120 LLELAASFFRERLKMPEGEAARAYLDKRGLSPEVVRDFGIGFAPAQWEAMRRHLGERGIS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E IE GLL+ ++S +YDRFR+R++FPIR RG+ +AFGGR L KYLNSPET Sbjct: 180 EAVQIEYGLLVHREDSGRTYDRFRDRVMFPIRDIRGRTVAFGGRVL-GDAKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGRELYGLYEARQANARLDR----------VVIVEGYMDVVALAQFGIRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA TE L L+++ +V CFDGD G +AA +A+ L +I G + F+ L GEDP Sbjct: 289 TATTEDHLSRLFRVVDEVVFCFDGDRAGRQAADRALRTALPMMIDGRQARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G AFE + + PL + L++ + R +ER + I + + Sbjct: 349 DTLVRREGADAFEDRVTCASPLSEFLFELAAQGRDLARIEERERYASQVLEAIGLLPEGM 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ + R + + + + D+ P + +V Sbjct: 409 LKSLLLTELSRRTGVDQSSFESLMARHASPESAGRSVSDESAPPPMAEAAPVVGEAPRGG 468 Query: 480 PSLREAAL------LLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532 L L L++ P +++ D + + +L + +Y Sbjct: 469 APAARGTLGLMARALQLLVHEPGLVERLPDN--DDWCSHEDGDARLCREVVRLLKAGRYR 526 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + GE L +L R+ + + ++R R Sbjct: 527 SAQVLLAHFHGTPEGERLAELARR------EPLVPKGLRGTELDNWVAYFQRHRRQRSPQ 580 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + + ++ + ++ L +L E+ Sbjct: 581 EEFDALLAR-SRTGERLSQQERQRLNELLMELK 612 >gi|260753822|ref|YP_003226715.1| DNA primase [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258553185|gb|ACV76131.1| DNA primase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 628 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 182/636 (28%), Positives = 299/636 (47%), Gaps = 44/636 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +F+ +L I +S+LIG+ V R ++ ACCPFH+EKTPSF+ ND KGFY Sbjct: 7 LPPEFLDELRQRITLSSLIGRTVKLTRAGR-----EFRACCPFHNEKTPSFYVNDEKGFY 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F++ G SF+++V+ LA AG+ +P +P ++ K L ++ Sbjct: 62 HCFGCGAHGDAIRFVTETRGLSFMDAVRELAGQAGMDIPEANPAAVRQAKRTATLHDIMA 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F L + YLD RGI + F LG+AP+ R L+ L + Sbjct: 122 EAAKWFSEQLHGIEGAEVRRYLDNRGISPAIAQNFGLGFAPNGRGRLKNALSHHAVEKLI 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--------KGESVKYL 234 + + ++G + YDRFR RL+ PI+ RG+VIAFGGR L S KYL Sbjct: 182 EVGLLISVEGRD---PYDRFRGRLMIPIKDQRGRVIAFGGRRLESIEGGNSLPDNSPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF KG+ LYN A ++ R II+VEGY+DV+ L QAG+ Sbjct: 239 NSPETPLFDKGRTLYNIDKASQAARRQNR----------IIVVEGYLDVIGLAQAGIHEA 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+ LGTALTE+Q+ LW++ + +LCFDGD G +AA +A + L PG ++FV L Sbjct: 289 VAPLGTALTEHQIERLWRIEDKPILCFDGDSAGQKAAVRAAERALVQARPGKTLSFVTLP 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD ++ GK+AFE+++ + L +L++ E +P+ RA L L Sbjct: 349 NGKDPDDLVKEQGKSAFEEVLSRPIALDRLLYRFEASQIDPQSPEGRAALSKRLDELAAS 408 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +D+ + Y ++ + F WK + Q + + S L Sbjct: 409 CRDEFIARGYRSNFKNLFYENFG------------WKSKKQQDSQTTIAATVTLSDLSTP 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +S +L+ L +P ++++ + LA++ + +L+K L + + + Sbjct: 457 TISDLECQYSRQILIGLSLYPEAIKQRLERLAELAVTDPKLKKWRETLITAVISEPDLDR 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + I L ++ +D + + + L R L+ + Sbjct: 517 DTIKAILKADANVDI--DTWDIKKDLRFPFTRPDIAPDLAIESLVALIDLVVEERELATE 574 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++++++ + + K +H + Sbjct: 575 EQQLKQVFTEERLIADYAKFEAA----QALHRKRRA 606 >gi|296284011|ref|ZP_06862009.1| DNA primase [Citromicrobium bathyomarinum JL354] Length = 633 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 189/633 (29%), Positives = 294/633 (46%), Gaps = 36/633 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ L + +S++I + R ++ ACCPFHDEKTPSF ND KG Sbjct: 1 MALSPQWLDQLRTRVTLSSVIMRTTKLQRAGR-----EWKACCPFHDEKTPSFTVNDQKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G +F+++V+ LA AG+ +P DP+ +K K + L Sbjct: 56 FYHCFGCGAHGDVIRWMTDQRGLTFMDAVKELAVTAGMEMPAPDPREAQKAKRRAGLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +FF L R YLD+RG + F GYAPD R +L L G Sbjct: 116 MGAAQEFFVRELAGPRGNAARDYLDKRGFSPATMREFGFGYAPDERQALATAL---GTLP 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPET 239 +++ G L + YDRFR+RL+ PI RG+VIAFGGR L+ K + KYLNSPET Sbjct: 173 PQLLVEGGLRIAIDGKDPYDRFRDRLMLPIHDVRGRVIAFGGRILTAKDGAPKYLNSPET 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KG+ LYN A +KS R I++VEGYMDV++L AG+ V+ LG Sbjct: 233 PLFDKGRTLYNIHRASPAARKSDR----------IVVVEGYMDVIALANAGIAEGVAPLG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE + LW+ P +LCFDGD G RA +AI+ L L PG+ + L G DP Sbjct: 283 TALTENHIAELWRHVPCPILCFDGDAAGQRAVRRAIERALPLLKPGHSLKIAWLPAGLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D I+ G AFE+++ + L++ LW E + +TP+ +A L+ L I I++ Sbjct: 343 DDLIKKKGVAAFEQVLGSAQSLLEALWTLEMQAAPLDTPEAKAGLKARLMTHIESIEEPD 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R Y + + D+ + R + RD+ P + L + Sbjct: 403 VRSLYRRDLLDKFSAFAFPRREKAPFQPRKQWR----RDEPEPLSPELAKRLANLSQGGQ 458 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIH 538 A ++ L P +++ + LA++ + L+ + + H Sbjct: 459 RQRLLADVVGQLARFPELVESHREALAELGEIDPATFSLFDPVLERAETLEADGKKAIFH 518 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +R R + + L R+ DA R+ +A+ L L + Sbjct: 519 ERWGSRSAEQSVSGLPREAHDAAT-----------AREDLAEAIELLVEGPALEKALAAA 567 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + +G + L+ ++ Q+ Sbjct: 568 TERF-EHDPEGAFAEQQRLLKRKLAFDARLGQM 599 >gi|296119844|ref|ZP_06838398.1| DNA primase [Corynebacterium ammoniagenes DSM 20306] gi|295966998|gb|EFG80269.1| DNA primase [Corynebacterium ammoniagenes DSM 20306] Length = 634 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 135/655 (20%), Positives = 257/655 (39%), Gaps = 52/655 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF +EKTPSFH +G+ Sbjct: 5 RIPESDIQAIRERAPIEEIVGEYVQLKPAG----YDSLKGLSPFKEEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD FL + SF E+V+ +A G + +++ + L+ Sbjct: 61 YHCFSTGNGGDVFKFLMEMEQVSFPEAVESVAQKIGYHINYQGGTTGARDEKPGTRQRLV 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ H L+ +L +RG I F+ GYAP + ++L +KGF Sbjct: 121 AANKAAHEFYRHQLETPEAATARNFLLDRGFSQDIIYTFECGYAPAGWDTTTKYLLRKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+P Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLAGNVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L++K K L+ A + S ++VEGY DV+++ AGV V+S Sbjct: 239 ETMLYNKSKVLFGLDLAKREIA----------SQRQAVVVEGYTDVMAMYAAGVTTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L + ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGGPHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + +T + R + Sbjct: 346 AVAPEGMDPCDLRLERGDAAVRDLVADRIPMFEFVIQSVLSEYRVDTAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D+ L+ Y++ + + + + K R R + Sbjct: 406 VVAQIRDEPLQREYARRLAGWVGWPDPDEVLQQVRAEVRKPKKPEPRRTILSDSRSTEVP 465 Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + PS RE L + P + + + + + N + + + + + Sbjct: 466 STPAPMIRPPSPRETHLWPQREALKVALQFPNVAGAYFDGVDEEAFTNEAYRIVRNAIIT 525 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578 + ++ E + + ++ D + +E + ++ + Y Sbjct: 526 AGGATQGA----------QQPTVEWIANVAGEMLDLTGRNFVSELAVEEILPTGLSMEEY 575 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + + E++ ++ ++ + E L + L + ++ + Sbjct: 576 ADMVLSRLQESQVGNHIAELKARLGRMRPSEDEEAYNSLFADLVALEQARRELNN 630 >gi|310766302|gb|ADP11252.1| DNA primase [Erwinia sp. Ejp617] Length = 581 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 178/629 (28%), Positives = 280/629 (44%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + + YL +RG+ I+ F +G+AP + + Sbjct: 119 LMTGLRDFYQQSLAHGQSAGARNYLAQRGLSDEVIQHFSIGFAPAGWDNALKRFGSNPDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + +AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLTDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL + +++VEGYMDV++L Q GV V+SLG Sbjct: 237 DIFHKGRQLYGLYEALK----------NHPAPGKLLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA+L + + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + D+L + + K K + Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESAKPVAQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ LI +P + + + L+ L S V ++ + Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFVELVSTCVAHPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + D + Q L R+ EE+ Sbjct: 506 LYRGTEFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA G AE+ L ++ + Q Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKQ 581 >gi|213965824|ref|ZP_03394016.1| DNA primase [Corynebacterium amycolatum SK46] gi|213951583|gb|EEB62973.1| DNA primase [Corynebacterium amycolatum SK46] Length = 652 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 140/657 (21%), Positives = 260/657 (39%), Gaps = 49/657 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + PI ++ +YV+ PF DE+TPSFH + G+ Sbjct: 14 RIPDSDIAAIRERTPIEEIVAEYVNLKPAGA----DSLKGLSPFKDERTPSFHVRPNHGY 69 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CFS GD SFL + SF E+V+ A G + ++E+ + LI Sbjct: 70 YHCFSTGKGGDVFSFLMEMEHLSFPEAVEACAEKIGFHINYEGGGTGRREEPGTRQRLIA 129 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L+ RG + F GY+P +L +HL++ GFS Sbjct: 130 ANREAQKFYREQFSTPAAAPAREFLENRGFTAEHAAQFGCGYSPAGWDTLTKHLQRLGFS 189 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E++ +AGL DRF RL++PIR+ G VI FG R L ++ KY+N+PE Sbjct: 190 FEELDKAGLSK--MGRMGPIDRFHRRLMWPIRNMSGDVIGFGARKLFDDDNLGKYMNTPE 247 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + + ++VEGY DV+++ +GV V+S Sbjct: 248 TMLYKKSKVLFGLDLAKKDIA----------AGHQAVIVEGYTDVMAMHASGVTTAVASC 297 Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L+LL +L ++ FDGD+ G +AA +A + + Sbjct: 298 GTAFGEEHLQLLRRLMLDDNFFRGELIYTFDGDEAGQKAAMRAFEGEQNFTG---QSYVA 354 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G+ A L+ PL++ + + + T + R + Sbjct: 355 VAPDGMDPCDLRQKKGEAAVRDLVASRRPLIEFVLRTLLADYDLTTANGRVSGLRRVVPV 414 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD------------Q 459 + +KD LR Y++ + + + + + +N + + Sbjct: 415 LAQLKDAALRDEYAREVAGWIGWNDEAELVQRVREEASRPQNEKRTPYQRRQEEARAREE 474 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++R +L + L I PA + LA + + + ++ Sbjct: 475 AEEARRRRNPALPYPNPRDPVLYAQREALKLAIQEPATTGPVFDALAPETFGHPTYRAVF 534 Query: 520 SFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + P + ++ +++K L V + G+ + + Sbjct: 535 DAIMAAGGACGEAATQPHSWATAIMDQAREDVVKHL---VTELGVEQIAVDTETLRP--- 588 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Y QA+ + + Q +++ ++++ + L + L + +++++ Sbjct: 589 YAQAILARLQEVWVGDQIAQLKAMLSRMRPSDDETAYNSLFADLLAMEQYRRELQAE 645 >gi|320195228|gb|EFW69857.1| DNA primase [Escherichia coli WV_060327] Length = 581 Score = 379 bits (972), Expect = e-102, Method: Composition-based stats. Identities = 178/630 (28%), Positives = 300/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + ++ L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHLRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMERAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADRNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|170766158|ref|ZP_02900969.1| DNA primase [Escherichia albertii TW07627] gi|170125304|gb|EDS94235.1| DNA primase [Escherichia albertii TW07627] Length = 581 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 298/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSDEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLINAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESVVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLKNLDQNKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|157162542|ref|YP_001459860.1| DNA primase [Escherichia coli HS] gi|170018682|ref|YP_001723636.1| DNA primase [Escherichia coli ATCC 8739] gi|188494232|ref|ZP_03001502.1| DNA primase [Escherichia coli 53638] gi|312972669|ref|ZP_07786842.1| DNA primase [Escherichia coli 1827-70] gi|157068222|gb|ABV07477.1| DNA primase [Escherichia coli HS] gi|169753610|gb|ACA76309.1| DNA primase [Escherichia coli ATCC 8739] gi|188489431|gb|EDU64534.1| DNA primase [Escherichia coli 53638] gi|310332611|gb|EFP99824.1| DNA primase [Escherichia coli 1827-70] gi|323941836|gb|EGB38015.1| DNA primase [Escherichia coli E482] Length = 581 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 177/630 (28%), Positives = 299/630 (47%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDP Sbjct: 287 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 504 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 554 LIAR--ERTHGLSNEERLELWTLNQELAKK 581 >gi|154686782|ref|YP_001421943.1| DNA primase [Bacillus amyloliquefaciens FZB42] gi|154352633|gb|ABS74712.1| DnaG [Bacillus amyloliquefaciens FZB42] Length = 603 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 284/633 (44%), Gaps = 38/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEVVNQVQQSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF E+V LA + P + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDFPDDITIHSASRPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I+ F++GYA DS + + L+++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLKKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F EE + +AGLLI ++ + +DRFRNR++FPI G V AF GR L + KY+NSP Sbjct: 179 FEEELMEKAGLLIRREDGSGYFDRFRNRIMFPIHDHHGAVAAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF A ++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFHKARLPIRKEERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE +++L + ++LC+D D G A KA L +V +L G Sbjct: 288 MGTSLTEEHVKILRRNVQEVILCYDSDKAGYEATLKAAGL---LQKADCKVRVSMLPDGL 344 Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR G F +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIRIRGGEKFRTDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYMKEVLKEISALS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S Y R ++ + + R+ + + +L Sbjct: 405 GSLEQEMYVKQLASEFSLSVESLTEQLSIYARQNAPGDKNAEPQTRRARVTTKA-KRRRL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ ++++ + + ++ + + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRNVIKKVIERVG-FEFNIDGHRALAAYLYAVYEEGADMTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + R+ + +LL + G+ E + ++ ++ L ++++ + + Sbjct: 523 LMARMQDEEISQLLSDI-------GMLQVNEELSEAELSDYVKKVLD-HRKWSM----IK 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E E + A + + K A L + ++ + Sbjct: 571 EKEAERADAERQKDFVKAASLAQEIVALNRSLK 603 >gi|119474864|ref|ZP_01615217.1| DNA primase [marine gamma proteobacterium HTCC2143] gi|119451067|gb|EAW32300.1| DNA primase [marine gamma proteobacterium HTCC2143] Length = 611 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 163/617 (26%), Positives = 282/617 (45%), Gaps = 32/617 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I +I + V + N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPQSFIDDLLDRLDIVEVIDRRVGLKKSGRN-----FTACCPFHEEKTPSFSVNQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ + F+ F +++ LA AG+ +P +++ + + ++ ++ Sbjct: 59 YYCFGCGAGGNAIGFIMDYERMDFPRAIEVLADTAGLEVPREASAFQEQPQQKKNIYTIL 118 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A ++ LK + + +R YL RG+ F +GYAP +L HL Q Sbjct: 119 EKAAVYYQQQLKEHPQKQRAVDYLKARGLSGEIARDFDMGYAPPGWDNLLNHLGQSDEDR 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +I+ G+LI+ + YDRFR+R+IFPIR +RG+VIAFGGR L + KYLNSPET Sbjct: 179 QLLIDGGMLIEKEEENKLYDRFRDRIIFPIRDNRGRVIAFGGRVL-GDDKPKYLNSPETP 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHK K LY + + ++ R +++VEGYMDV++L Q G+ ++LGT Sbjct: 238 VFHKSKELYGLYQSRKANRQLQR----------LLVVEGYMDVVALAQHGINWSAATLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A + L +++ P ++ CFDGD+ G +AA +A+D L + G R F+ L +GEDPD Sbjct: 288 ATSTDHLNRVFRQCPEVIFCFDGDEAGRKAAVRALDSALPAMEDGRRARFLFLPQGEDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G + F +L+ ++ PL + L+ + + + D RA + I+ + Sbjct: 348 SMVRAIGASNFIRLVEKAEPLEEYLFNAQADGLDLGSLDGRARMSTLAAPLIDKLPGGVF 407 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++ DR +K + R + R ++ K K Sbjct: 408 KELMMSSLADRTGLSLEKLSEILQRHKRNKQATEPQPASPQLPDRAPLNTPASPKRRDKG 467 Query: 481 SLREAAL-------LLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532 ++ + + L++ P + +++ L + ++ Sbjct: 468 LVKSETMRDPILYAIALLLHDPKAASHV--TIPATLLQSDDGNAPLLIAMLELLHKRPDS 525 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + +GE L+QL + +++ Q ++ L Sbjct: 526 TSAMLIGHWYGESWGETLQQLLHAE-----QFIPSTDIELELIDTLQHLDRRHQHQDLGH 580 Query: 593 RQKEEIEKQIAQVTAKG 609 + + + K A ++ + Sbjct: 581 QLDKILSKDYASLSDEE 597 >gi|54307644|ref|YP_128664.1| DNA primase [Photobacterium profundum SS9] gi|46912067|emb|CAG18862.1| putative DNA primase [Photobacterium profundum SS9] Length = 608 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 168/621 (27%), Positives = 284/621 (45%), Gaps = 51/621 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DL+ I +++ V ++ N + ACCPFH+EKTPSF + K F Sbjct: 29 KIPRSFIDDLITRHDIVDVVDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 83 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 Y+CF C V G+ L F+ F+E+++ L++ G+ +P D + + L Sbjct: 84 YHCFGCGVHGNVLDFVMEFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYD 143 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + + F+ L+ K YL RG+ ++ F +GY PD +R + S Sbjct: 144 QMGLISQFYQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPES 203 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ ++ G+LI+ D+ YDRFR R++FPI RG+VI FGGR L + KYLNSPET Sbjct: 204 QKALVTTGMLIENDSGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSPET 261 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + L ++ + +++VEGYMDV++L Q GV V+SLG Sbjct: 262 PIFHKGRELYGLYEVLQAHREPAK----------LLVVEGYMDVVALAQFGVDYAVASLG 311 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T L+ L++ + +V C+DGD G AA++A++ L L G ++ F+ L GEDP Sbjct: 312 TATTSDHLQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDP 371 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS IR GK AFE+ +++PL + L+ ++ + A+L I I+ + Sbjct: 372 DSCIRAEGKDAFEERTTQAMPLTEFLFNTLMLQVDTSSKEGMAKLSILAVPLIDKVPGGT 431 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y + + +L + + + S++ +++ + K+ Sbjct: 432 LRLYLRELLGKKLGLPDEAQLQQL------------------ISKQGIETKKIATPEIKR 473 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +REA + LI P + E+ D + L + ++ + Sbjct: 474 TPMREA--IALLIQKPNFVNSLEFEMTDFEGIDVPGLNLLLSIVDKCRTNPNITTGQLLE 531 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEE 597 ++ +L D Q L R + + +Q E+ Sbjct: 532 HWRGNKQEAMMARLAAWELPLS----------DDEDQTLNVFLDAMDRIIGQCVKQQIEK 581 Query: 598 IEKQIAQVTAKGEAEKTAILI 618 ++ + V E ++ L+ Sbjct: 582 LQAKSNTVGLSVEEKQELQLL 602 >gi|218708435|ref|YP_002416056.1| DNA primase [Vibrio splendidus LGP32] gi|218321454|emb|CAV17406.1| DNA primase [Vibrio splendidus LGP32] Length = 583 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 175/632 (27%), Positives = 292/632 (46%), Gaps = 61/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I +++ V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIVDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116 +CF C V G+ + F+ F+E+++ LA+ G+ +P E + + + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLDFVEAIEELASFLGLDVPREQRSGEISTAPRANSEQKRN 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+ ++F+ LK + +K YL RG+ ++ F +GY D +R++ Q+ Sbjct: 120 LYDLMGGISNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + + KYLNS Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LY + L + I++VEGYMDV++L Q GV V+ Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDYSVA 287 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L GN + F+ L G Sbjct: 288 SLGTSTTGDHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTGNTLKFLFLPDG 347 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINH 414 EDPDS+IR +G+ AFE+L+ + PL L+ E N T + ++ L H IN Sbjct: 348 EDPDSYIREHGQAAFEQLVHNATPLSTYLFDNLIEIHKLNLGTTEGKSALRAHASALINK 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D Y Q + ++L + E +G+ ++ H P Sbjct: 408 IPDS-----YFQELLEKL-------LDERTGFDNQLRRARVHTKNPTPQPHKELKRTPM- 454 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ LI +P+ + L L+ + + Sbjct: 455 ----------REVIALLIQNPSYADMVPDLSSVKGLQLPGL-SLFVEVLDKCHAHPHINT 503 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + LL +L + + + Q + +Q Sbjct: 504 GQLLEHWRHNKHEALLSRLASWEIPLD-EDNQEDIFLDSLDNILAQCV---------EKQ 553 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + V AE+ L++++ ++ Sbjct: 554 IENLQAKARSVGLS--AEEKRELLALMLDLKA 583 >gi|78221615|ref|YP_383362.1| DNA primase [Geobacter metallireducens GS-15] gi|78192870|gb|ABB30637.1| DNA primase [Geobacter metallireducens GS-15] Length = 588 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 165/635 (25%), Positives = 287/635 (45%), Gaps = 52/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P D I+++ I +++ YV + N Y CPFH EKTPSF+ N ++ Sbjct: 1 MSLIPDDKIREVRERASILDVVSDYVSLRKSGAN-----YQGLCPFHGEKTPSFNVNPAR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDL 117 G ++CF C V G+ ++F++ + G SF E+V+ LA GV + +K + +L Sbjct: 56 GIFHCFGCGVGGNAITFIARMEGLSFPEAVKFLAKRVGVEIEDRPVSAAEKRRLDEREEL 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++A F+ +L ++ YL+ RG+D E + LG+APD L HL+ + Sbjct: 116 HGIMDLAVGFYREALERSEEGGTARRYLEGRGVDRATAEAYCLGFAPDRWDFLARHLQHR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E + GL + + YD FRNRL+F I G+ I FGGR L KY+NS Sbjct: 176 SVPLELAEKLGL-VRRRDGGGFYDTFRNRLLFTITDIHGRAIGFGGRVL-DDSLPKYINS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK + L+ A ++ ++ I+VEGY D L+L QAGV+NVV+ Sbjct: 234 PESPIYHKSEVLFGVSLAKGAMR----------ETASAIVVEGYFDHLALYQAGVRNVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTALTE ++LL + + + FD D G +A +A+DL L G + V L+ G Sbjct: 284 TCGTALTEGHIKLLKRYAGNVYTLFDADSAGRKATLRAMDLCLD---AGFPAHVVELTAG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSFIR G F + ++ P+VD +++ + T + + ++ + + + Sbjct: 341 EDPDSFIRKEGAETFSARLAKARPVVDYFFRQLVRDEDTGTVEGKVKVIDEMAPRLARVS 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + R Y + I L + + G A RD++ P+Q + Sbjct: 401 NAIERELYVREISRVLGVDVRSLARKIGGSSSP----AAPRDERAPAQSRRKKGATP--- 453 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL + +P + + + + + + K E Sbjct: 454 -------EEMLLSLMGRYPEVAERVRNHDPARIFG-PQFLPVAEAILERIGAGKPVEWSE 505 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I L++ + + R A VDV + + Q A +R L + + Sbjct: 506 ILD---------LVEGGEERGRIAAFLVNDDHLADVDVHKAFDQCRAALERNSL--GRMK 554 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E+ +++A ++ + L++ + + + Q+ Sbjct: 555 ELARELAATDP--DSPRYRDLLAEIDALRNRKSQL 587 >gi|253580850|ref|ZP_04858113.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847920|gb|EES75887.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 598 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 159/611 (26%), Positives = 261/611 (42%), Gaps = 37/611 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ + I +++ QYV ++R + Y+ CPFH+EKTPSF +K Sbjct: 1 MRYSDDIIEEVRMKNDIVDVVSQYVKLNKRGS-----TYFGLCPFHNEKTPSFSVTPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F E+++ LA AGV LP + +KK + + L+ Sbjct: 56 MYYCFGCGAGGNVFNFVMEYENYTFGEALKHLADRAGVQLPKIEYSGEAKKKAERRAALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F++ L+ ++ H YL RG+ I F LGY+ L ++L+ K + Sbjct: 116 EINKLAAGYFYYQLRRENGRQAHEYLTGRGLSEETIRKFGLGYSDKYSDDLYKYLKSKNY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E + ++GL YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 176 SDELLRDSGLFNVD-ERRGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A +++IL EGYMDV+S+ QAG N V+SL Sbjct: 234 TTIFDKSRNLYGLNVAR------------TTRKNYLILCEGYMDVISMHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT LL + + ++L +D DD G+RAA +AI + G V L +D Sbjct: 282 GTALTSGHASLLKRYTQEVLLLYDSDDAGVRAALRAIPI---LREAGVSSRVVNLKPHKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G FEK + +++ P + + + D+ Sbjct: 339 PDEFIKALGAEEFEKRLEQAMDSFMFRVHMAEREFPMEEPQGQNRFFERCAQMLLELSDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +AI + G K + P + + K Sbjct: 399 LERNLYIEAIVKDYRSSGISVENLKKRVGALAMKGTPAEQRIQPKP---VGAGQQKKKES 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L+ +P I + + + +++ L+ + P + Sbjct: 456 AAEKAQKLMLTWLVTYPGIFDTVEKYIQPSDFVVPLYRQVAEMLYQQHRDG-DVNPARLM 514 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR---------FR 589 + + L A V + ++L R + Sbjct: 515 NAFIDSEEQREVSSLFNATIHLETPEEQNRAFSDAVIRIKDESLKERNRTWDPTDIQGLQ 574 Query: 590 LLSRQKEEIEK 600 L + K+E+E+ Sbjct: 575 ELVKAKKELEE 585 >gi|90020364|ref|YP_526191.1| DNA primase [Saccharophagus degradans 2-40] gi|89949964|gb|ABD79979.1| histidine kinase [Saccharophagus degradans 2-40] Length = 656 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 175/671 (26%), Positives = 281/671 (41%), Gaps = 64/671 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I +I V + N Y ACCPFH+EKTPSF + K F Sbjct: 3 RIPQSFIDDLLNRLDIVEVIDHRVKLKKAGKN-----YSACCPFHEEKTPSFTVSPDKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 YYCF C G+ + FL F+++V+ LA +AG+ +P + K K Q L + Sbjct: 58 YYCFGCGANGNAVGFLMEYERQGFVDAVESLARVAGMQVPKETTEKDVKHAKKQRGLYDI 117 Query: 121 IEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + +A+ ++ LK + YL RG+ F +GYAP +L L Sbjct: 118 LGLASTYYQKQLKEHSSRERAVSYLKGRGLSGAIARDFGMGYAPPGWDNLLVKLGTNEED 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++E+GL+I + YDRFR+R++FPI+ +RG+VI FGGR L + KYLNSPET Sbjct: 178 RHLLVESGLVIRKEGEGKLYDRFRHRIMFPIKDTRGRVIGFGGRVL-GDDKPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KG+ LY + A +K R +++VEGYMDV++L Q G++N V++LG Sbjct: 237 PVFSKGRELYGLYEARQSNRKLER----------LLVVEGYMDVIALAQYGMRNAVATLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA E L+L ++ +V CFDGD+ G AA +A+ L + G ++ F+ L G+DP Sbjct: 287 TACGEDHLKLAFRYVNEVVFCFDGDNAGRTAAKRALVNALPAMEDGRQIRFLFLPEGQDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G F I +PL + L+ E N+ + RA +N + + Sbjct: 347 DTLVRQIGAERFTAQIENGVPLEEFLFDAVAEGIDVNSMEGRARFGKLAAPLLNTLPNGI 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK---- 475 R + R + + A+ + P + + Sbjct: 407 YRELMFANLAKRTGLSLDLLLELTKEKVSLVAEPAKPDPSQQPQPEPELPAHLGANIGTS 466 Query: 476 --LSKKPSLRE-------------------------------------AALLLTLINHPA 496 S P + E + L+ +P Sbjct: 467 ISASTPPHIDESYAHIPPLEPDYVARTAQTSAPKSAPVKRSSITLNPVRLCTILLLEYPK 526 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 ++ A ++ EL +L+ L ++ I R E + L Sbjct: 527 LVATLNNIPARAETEDEELTRLFD-LIEYIQQRPNCSFNSILGYWGGRYGIEQQQALADL 585 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 V + + S + N ++ Q + ++ + + QKE + Q + EK Sbjct: 586 VANQLMGSVRSVENYNPEQELEQSLARIGQKLQKANNQKELAKLQAKGLGNLNNEEK--E 643 Query: 617 LISILHEVHIQ 627 L + Q Sbjct: 644 RFRELVRLQHQ 654 >gi|304391335|ref|ZP_07373279.1| DNA primase [Ahrensia sp. R2A130] gi|303296691|gb|EFL91047.1| DNA primase [Ahrensia sp. R2A130] Length = 625 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 211/653 (32%), Positives = 338/653 (51%), Gaps = 59/653 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ IPI+++IG+ V +DR+K+N KGD+WACCPFH EK+PSFHC +SKG Sbjct: 1 MRFTPAFLDEVRDRIPIADIIGRRVTFDRKKSNQAKGDFWACCPFHGEKSPSFHCENSKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+V+RLA AGVP+P VDP+ ++ K + L + Sbjct: 61 RYHCFGCGVSGDHFRFLTELDGLSFPEAVERLADEAGVPMPAVDPQAAERAKEKATLHDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A DFF L+ A + YL +RG+ + F LGYAP SR +L+E+L K + Sbjct: 121 MQLAVDFFRQQLQEAGGAKARAYLRDRGLSTSVQNEFGLGYAPSSRSALKEYLASKDVPK 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++I GL++ G + SYDRFR+R++FPI +R + IAFGGR LS KYLNSPET Sbjct: 181 DQIEACGLVVHGPDIPVSYDRFRDRIMFPILDARSRPIAFGGRALSADVPAKYLNSPETE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K LYN+ A + + +++ EGYMDV++L AG++N V+ LGT Sbjct: 241 LFSKSNVLYNYAKARKAVPRD----------GNLLVCEGYMDVIALHAAGIENAVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL L WK+ P+ VLCFDGD+ G+RAA +++DL+L L FV L G DPD Sbjct: 291 ALTEQQLGLAWKVGPKPVLCFDGDEAGIRAASRSMDLILPTLTDEKSAQFVNLPSGLDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G +F+ LI ++P D L R N P+E+ +E + + I+D+ + Sbjct: 351 DYVKKRGAQSFKTLITHAMPSSDFLISRRLFNAPIGKPEEKLAIERAILADVYSIEDKGM 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 +++ +R L +F +L + + + +P Sbjct: 411 QHHLRMYVRTHLANVFYNS-----------------------DSKLPPAPSLVSEFQNQP 447 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + R+A +L ++HP++L E Y+ + +I ++ Q L E +I+ + Sbjct: 448 ATRDAIILGLAVHHPSVLYEFYESIGEIAMVDDRYQTFCHELLRLSDEFDDLDVAKIY-K 506 Query: 541 LCERGFGELLKQLDRQ--------------VRDAGLWSATTEANIVDVRQGYQQALALYK 586 L F ++L+++ + + L + + + L Sbjct: 507 LLSEDFHDVLEEVHGKPFEVALTQHYTYSGMMGHNLKKRFPMWSPDMPLRLVHEVFQLLL 566 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ R +E ++ + + L ++ I HQ++ A + Sbjct: 567 DQYVIGR----LELELKTYDSATDVAL------HLRKIEI-FHQMKDDNAQKD 608 >gi|158313962|ref|YP_001506470.1| DNA primase [Frankia sp. EAN1pec] gi|158109367|gb|ABW11564.1| DNA primase [Frankia sp. EAN1pec] Length = 624 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 150/648 (23%), Positives = 259/648 (39%), Gaps = 49/648 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I+++IG +V G CPFHDEK+PSF+ S GF Sbjct: 4 RIRDADIALVRERSLIADVIGDHVQLRPVG----GGSLVGLCPFHDEKSPSFNVRPSVGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 ++CF C+ GD +F+ + G +F E+V+RLA AG+ L + + L+ Sbjct: 60 FHCFGCNEGGDVYAFIRKIDGLTFPEAVERLARRAGITLTYEGGGTTSRAVTSQRQRLLD 119 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +A +F+ L + + +L RG D A E F LGYAP S +L HL + F Sbjct: 120 AHRLAAEFYVEQLHSSPDARAGWEFLASRGFDRAAAEQFGLGYAPSSWDALTRHLLARRF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNS 236 + E++ GL G DRF +RL++PIR G+V+ FGGR L+ KYLN+ Sbjct: 180 TAEELELGGLAKRG-GRGGLIDRFHHRLLWPIRDLGGEVVGFGGRRLAEGPDAGPKYLNT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 ET LF K K LY A + + +++VEGY DV++ AGV V+ Sbjct: 239 AETPLFKKAKLLYGADLARREIARRY----------QVVVVEGYTDVMACHLAGVPTAVA 288 Query: 297 SLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 S GT+ + ++ + + ++ FDGD G AA +A + + + Sbjct: 289 SCGTSFGADHVAIVRRLLMDSDARTGEVIFTFDGDKAGQAAALRAFEYEDRFVT---QTF 345 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G DP +G A L+ PL + + + NT + R Sbjct: 346 VAVQPDGLDPCDLWTQHGDAAVRDLVASRQPLFEFAIRGVIDRYDLNTTEGRIAALDAAA 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 +N +KD +R+ Y+ + L L ++++ E G +HR Q G ++ + Sbjct: 406 PLVNRLKDAGMRHRYAVNLDRWLGFLDERFVVERVG---------QHRSQAGAAEGVGAR 456 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + ++ E L + HP + + L+ + + + + Sbjct: 457 RRLDPAPDDATAIVERETLKLALQHPGLAGPMFDTLSTELFTVPAHRAVREAIAVAGGVC 516 Query: 530 KYF----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 P + + E +L R V + + DV Y Sbjct: 517 AGLYAAGDPSGWVAAVVDATPDE---ELRRFVLALAVEGVLCDH---DVDDRYVDDQMSR 570 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++R+ E++ ++ ++ + + L + Q+ Sbjct: 571 VQELHVTRRIRELKSRVQRLNPASDTDAFNRAFGELIALEQHKLQLRE 618 >gi|254491217|ref|ZP_05104398.1| DNA primase [Methylophaga thiooxidans DMS010] gi|224463730|gb|EEF79998.1| DNA primase [Methylophaga thiooxydans DMS010] Length = 572 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 163/612 (26%), Positives = 271/612 (44%), Gaps = 51/612 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI +LL + I ++I V + N ACCPFH+EKTPSF + K FY Sbjct: 5 IPTQFIDELLARVDIVDIIDTRVPLKKAGKNLH-----ACCPFHNEKTPSFTVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G + FL SF E++Q LA G+ +P + ++ L L++ Sbjct: 60 HCFGCGAHGTAIGFLMEYDQLSFPEAIQELADHVGMTVP--TTQQASLSPVKQSLYDLMD 117 Query: 123 VATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++ H L+ + + YL RG+ +E+F +G APD ++ + Sbjct: 118 KVGQYYVHQLQTHPQRQAFVDYLKRRGLSQKTVELFGIGMAPDGWDNVLRTFGSNPQQTK 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++++ GLLI D +YDRFRNR++FPI RG+VI FGGR L + KYLNSPET + Sbjct: 178 QLLDGGLLIKNDKG-RTYDRFRNRIMFPIWDRRGRVIGFGGRVL-DDSTPKYLNSPETPI 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG LY + A +K R I++VEGYMDV++L + G+ N V++LGT+ Sbjct: 236 FHKGAELYGLYQARKANRKLER----------IVIVEGYMDVIALAEHGISNAVATLGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LRLL + +P +V CFDGD G AA++A + L L ++ F+ L GEDPDS Sbjct: 286 TTADHLRLLLRAAPEVVFCFDGDRAGRDAAWRAAENALPMLGGNQQLKFMFLPDGEDPDS 345 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + G AF + +V + + ++ + D RA L K + H+ R Sbjct: 346 LVSEQGAEAFNERVVNAQNYSEFFFETLGSQVDLASMDGRARLVEMAKPYLKHVPAGVYR 405 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + + + K+ A+ + + Sbjct: 406 DMLEQRLAELSKTNIATLNKHLEKPAQQQKRPAKKQAMATMTPI---------------- 449 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + ++ +P + +E ++A I+ + L + + + +R Sbjct: 450 ---RMAITIVLQYPILAREI-DDVAAIQSVKQPGVNILQELLETLHQHPHLTTAALLERW 505 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 ++ G L++L + D + + + S++ E+ + Sbjct: 506 RDKENGAHLQKLA----------LQPLSLSADALKHELTGIVSRLQKEAKSQRINELTSK 555 Query: 602 -IAQVTAKGEAE 612 +++T +AE Sbjct: 556 PFSELTEAEKAE 567 >gi|291451170|ref|ZP_06590560.1| DNA primase [Streptomyces albus J1074] gi|291354119|gb|EFE81021.1| DNA primase [Streptomyces albus J1074] Length = 634 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 148/654 (22%), Positives = 268/654 (40%), Gaps = 45/654 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + +KG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLSL----RNAGGGNLKGLCPFHDEKSPSFQVSPAKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLAA AG+ L + + + LI Sbjct: 60 FHCFGCQEGGDTITFVRKVDHLTFSEAVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ L + +L ERG D A F +GY+P L +LR +GF+ Sbjct: 120 AHKAAAEFYAKQLDGPEAETGRRFLAERGFDQAAATHFGIGYSPVGWDHLTRYLRGQGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL D DRFR RL++PIR G+V+ FG R L + ++ KYLN+PE Sbjct: 180 DKELITSGLA--QDGRRGPVDRFRGRLMWPIRDIGGEVVGFGARRLREDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AG+ V++ Sbjct: 238 TPIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGITTAVATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA + +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGQDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + ++ TP RA + Sbjct: 345 PDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVSRYDLETPAGRAAALDEAGPVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------S 463 IK ++ + + L L +++ G W ++ P Sbjct: 405 RIKSASSQHEVAVQLAGMLGILDTQFVVRRIGQLARWARDRGSDAGPAPRRADVAGHAVE 464 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + S L E LL + P ++ + + + + Sbjct: 465 TSAPRFSGPALNLRSPAFTTERELLKLALQRPELVSPAFDAYGSDEFTAAPYAAVREAIE 524 Query: 524 SDFVEQKYFLPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + R+ E + ++ + ++ + T + + Y Sbjct: 525 EAGGAELGADLGMDYLTRVREAAPDDTVRAMVTELAVEAIRRRTVD-------EVYAGEQ 577 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + R R + R+ +++ +V A+G+ + A + + L + + + A Sbjct: 578 LVKVRLRAVERRIRDLQGTFTRVAAQGDQTQLASVQNELWVLQQYDRSLRNNGA 631 >gi|311278025|ref|YP_003940256.1| DNA primase [Enterobacter cloacae SCF1] gi|308747220|gb|ADO46972.1| DNA primase [Enterobacter cloacae SCF1] Length = 581 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 177/632 (28%), Positives = 300/632 (47%), Gaps = 60/632 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----WHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL + YL +RG+ S I F +GYAP ++ + + Sbjct: 119 LMDGLNAFYQQSLNQPAAEPARQYLTKRGLSSEVISRFAIGYAPPGWDNVLKRFGANPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R+++PIR RG+V+ FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMYPIRDKRGRVMGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQAVAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I+ + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENSAPRPVPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNE---LQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P + + N E L+S L + + Q + Sbjct: 452 -----RILIGLLVQNPELAALV----PPLTGLNPEKMAGLALFSELVNSCLAQPGLTTGQ 502 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + ++ L++L +W + I + + +L + +L ++E Sbjct: 503 LLEQYRGTKAAATLEKL-------SMWDDIADKEI--AEKTFTDSLN-HMFDSMLELRQE 552 Query: 597 EIEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 E+ IA+ G +E+ L +I E+ + Sbjct: 553 EL---IARDRTHGLSSEERRELWTISQELAKK 581 >gi|259907101|ref|YP_002647457.1| DNA primase [Erwinia pyrifoliae Ep1/96] gi|224962723|emb|CAX54178.1| DNA primase [Erwinia pyrifoliae Ep1/96] gi|283476902|emb|CAY72759.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 581 Score = 378 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 178/629 (28%), Positives = 278/629 (44%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEIPYESGSGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL YL +RG+ I+ F +G+AP + + Sbjct: 119 LMTGLRDFYQQSLGQGSSSGARGYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + +AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLTDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL + +++VEGYMDV++L Q GV V+SLG Sbjct: 237 DIFHKGRQLYGLYEALK----------NHPAPGKLLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA+L + + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + D+L + + K K + Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLFPEKAESAKPVAQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ LI +P + + + L+ L S V ++ + Sbjct: 452 -----RILIGLLIQNPQLATIVPPLDGLEQSETPGF-PLFIELVSTCVAHPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + D + Q L R+ EE+ Sbjct: 506 LYRGTEFSQSLETLATW----------NHMIVDDEVETMFQDALASMYNNALERRLEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA G AE+ L ++ + Q Sbjct: 555 --IAHDRTHGLNAEERRELWTLSQALKKQ 581 >gi|260902498|ref|ZP_05910893.1| DNA primase [Vibrio parahaemolyticus AQ4037] gi|308109801|gb|EFO47341.1| DNA primase [Vibrio parahaemolyticus AQ4037] Length = 586 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 173/635 (27%), Positives = 290/635 (45%), Gaps = 64/635 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---------EKKEKI 113 +CF C G+ + F+ F+E+++ LA+ G+ +P + Sbjct: 60 HCFGCGAHGNAIDFMMEFERLEFVEAIEELASYLGLDVPREQRSGGSGQFKSGPQASSSE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ + LK K YL +RG+ ++ F +GY D +R++ Sbjct: 120 KRSLYDLMGSIAQFYRNQLKQPSSKVAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L +G + KY Sbjct: 180 GQNKDNQDMLVTGGMLIENDKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAHREPA----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +++L++ + +V C+DGD G AA++A++ L L GN + F+ L Sbjct: 288 SVASLGTSTTGDHIQMLFRQTNTVVCCYDGDRAGKEAAWRALENALQFLKTGNTLKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK AFE+ I ++ PL L+ E N + ++ L + Sbjct: 348 PDGEDPDSYVRKYGKAAFEQQIEQATPLSSYLFDNLIELHQINLGNNEGKSALRAYASAL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D + ++ + P +++ ++ Sbjct: 408 IDKIPDPYFQ---------------------ELLEELLHERTGFDNRLRQPRKKISETRP 446 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K K+ +RE ++ LI +P+ Q + L L++ + + Sbjct: 447 QPHKEIKRTPMRE--VIALLIQNPSYAQMVPDLSSVRDLSIPGL-SLFADVLDKCQAHPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L E + + + Q + Sbjct: 504 INTGQLLEHWRNSQNEALLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 554 EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 586 >gi|261342494|ref|ZP_05970352.1| DNA primase [Enterobacter cancerogenus ATCC 35316] gi|288315135|gb|EFC54073.1| DNA primase [Enterobacter cancerogenus ATCC 35316] Length = 581 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 297/628 (47%), Gaps = 52/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDKLEFVETVEELAAMHNLEVPYEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SLK++ + YL+ RG+ I F +GYAP ++ + Sbjct: 119 LMDGLNAFYQQSLKHSAAEPARQYLNARGLSDDVIARFAIGYAPPGWDNVLKRFGGNSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQENAEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I+ + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLMPQVDLSTPDGRAQLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDSQLERL-------MPKFAENGAARPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + L L+S L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPELAPQVPSLAGLNHEKLPGLG-LFSELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L +W + +I + + +L + +L ++EE+ Sbjct: 506 HYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLELRQEELI 555 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T +E+ L I E+ + Sbjct: 556 AR--ERTHGLSSEERRELWMINQELAKK 581 >gi|134300302|ref|YP_001113798.1| Fis family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053002|gb|ABO50973.1| DNA primase [Desulfotomaculum reducens MI-1] Length = 604 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 166/624 (26%), Positives = 277/624 (44%), Gaps = 40/624 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+++ I +I +++ ++R N Y A CPFH EKTPSF+ N + Sbjct: 4 RIPDSVIEEIRQRTDIVEVISRFIHVEKRGKN-----YLALCPFHQEKTPSFNINPERQM 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C V G+ FL + G SF ESV+ L G+ +P PK K+ + ++ Sbjct: 59 FHCFGCGVGGNVFKFLMMVEGLSFPESVRSLGTKLGIEVPEEISPKERVKQGKKDRAFKI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A DF+H L YL+ R + E F+LG+AP SL L KG S Sbjct: 119 YGLARDFYHFLLTKEIGIGAIRYLESRNLTDKTRETFELGFAPLGWDSLTGFLTAKGISG 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E++ + GL+ S YDRFRNR++FPI ++G+V+ FGGRT+ + KYLNSPE Sbjct: 179 EELTKLGLVQKK-ESGGYYDRFRNRIMFPIWDNQGRVVGFGGRTMGEDNP-KYLNSPEGE 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F+KG+ LY A ++ + +L+EGYMDV+S Q GV N V+SLGT Sbjct: 237 YFNKGQLLYGLHIARKGIR----------EQGYAVLMEGYMDVVSTYQHGVTNAVASLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T Q ++L + +V+ +D D G++AA +A D+ G +V + +DPD Sbjct: 287 AFTRDQGKILMMYTHDVVIAYDADTAGIKAATRAADI---LQELGCQVRIATIVGAKDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ +G ++ +I ++PLV + + + + + + + Sbjct: 344 EYIQSHGLEGWQSIIDHAMPLVQYKLLQAAQKHGLQNAGAKQRILREVLPNLASVASAIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--LVKGKLSK 478 + LQ ++ + E Y R +K ++ D + S+ + Sbjct: 404 LEETVKQAATVLQVNWETVLEEIKKYKRNSRKKSQIEDNFAKESHNISSARYFAPVRPKD 463 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 S EA +L + + L+ QEL + + NN Q+++ Sbjct: 464 ARSNAEAGVLRFALENKEYLERILQELGNDFFQNNVYQRIFDV---HLGN---------- 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E+ LL +LD + E ++ Q + KR R + +++ Sbjct: 511 ---KEQNSARLLDELDESSQRIVSSLLVQEIPGENMDQILSDFINTIKRTRE-KAKLDDL 566 Query: 599 EKQIAQVTAKGEAEKTAILISILH 622 Q+A G+ E+ L ++ Sbjct: 567 LMQLAAAEKSGDTERVIELSRKIN 590 >gi|146309041|ref|YP_001189506.1| DNA primase [Pseudomonas mendocina ymp] gi|145577242|gb|ABP86774.1| DNA primase [Pseudomonas mendocina ymp] Length = 663 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 183/675 (27%), Positives = 299/675 (44%), Gaps = 85/675 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++++ LA AG+ +P + ++ + + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAIEELAKRAGMDVPREEGGRGRTPRQPVDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E A + + +LK+ + K YL RG+ F LG+AP +L + L Sbjct: 120 LEAAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGLGFAPPGWDNLLKQLGGDALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ ++ YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKAMIDAGLLIENADNGRRYDRFRDRIMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + I++VEGYMDV++L Q G++N V++LG Sbjct: 239 AVFHKGQELYGLYEARKHNRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + + PL D +++ +E + + +A L I+ I Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLSEEADPRSLEGKAHLVTLAAPLIDKIPGN 408 Query: 419 KLRYYYSQAIRDR----------------------------------------------- 431 LR Q + + Sbjct: 409 NLRALMRQRLSEITGLSGEALSQVASAPRSHAPSTISQAPSSDYPDYGDIPDSAYYDAMP 468 Query: 432 -LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA---AL 487 L Q + Y R + ++G + + E+ + Sbjct: 469 DLGGYEQPAPPQQQAYERSNDGGKGNWKKEGGKWSKKGKGDFAPRAPRTAVSVESPHLSA 528 Query: 488 LLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + Q+ + + E +L L + ++ R Sbjct: 529 LRTLLHHPQLAQKVED---VSHFADEEDTYAQLLVALVGALQKNPGMRSLQLIARWHGTE 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + W + + LA +R R L + + +++++ Sbjct: 586 QGRLLRALAEKE-----WLISADNLEQQFFDTIT-TLAARQRERSLEQLLR--KARLSEL 637 Query: 606 TAKGEAEKTAILISI 620 +A+ E ++ L+S Sbjct: 638 SAE-EKDQLRALLSR 651 >gi|317128327|ref|YP_004094609.1| DNA primase [Bacillus cellulosilyticus DSM 2522] gi|315473275|gb|ADU29878.1| DNA primase [Bacillus cellulosilyticus DSM 2522] Length = 604 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 158/634 (24%), Positives = 292/634 (46%), Gaps = 43/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I I ++I +YV ++ N + CPFH EKTPSF + K Sbjct: 6 RVSEDIIEEIRKSIDIVDIISEYVQLKKQGKN-----FIGLCPFHGEKTPSFSVSPDKQL 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL- 120 Y+CF C G+ SF+ G F+ESV+++A + +P ++ ++ + + ++ Sbjct: 61 YHCFGCGAGGNVFSFIMETEGLPFLESVKKIADRMNMAIPELEHVTDEATSKEDSITKIW 120 Query: 121 ---IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ FHH L + K YL RG I+ F++GYAP+S L L ++ Sbjct: 121 HNAHALSAKLFHHVLTSTDEGKEARDYLRNRGFTKEVIDTFQIGYAPNSWDFLASFLEKR 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F +++++ G+L + YDRFR+R+IFPI +++G +IAFGGR LS+G KYLNS Sbjct: 181 KFPMDEMVKCGILSVREFDQKPYDRFRDRIIFPIWNNKGDMIAFGGRILSEGNP-KYLNS 239 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F+K + LY F A ++K + IL EGY+DV+S +AGV N V+ Sbjct: 240 PESSIFNKSETLYYFHKARPSIRKK----------NEAILFEGYVDVISAWKAGVDNGVA 289 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTAL+ Q ++L +L+ ++LC+D D+ G A K + G +V +L G Sbjct: 290 SLGTALSTTQAKMLRRLTDHVILCYDSDNAGQNATMKNAAI---LSEAGLQVRVAILPDG 346 Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +I+ G F + +I +SL L+ ++ ++ ER + ++ + Sbjct: 347 MDPDDYIQKMGVDRFNKDVIGQSLTLMGFKFQYYRRGKNLKDDGERMTYIHQMIEEVSKL 406 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R +Y + + + + + + K R + Q L Sbjct: 407 SHAVERDHYLRRLSEEFSLSLEALKQQQIQVYKQSKGKNEERKVVHSNFSKQQKRL---- 462 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E L+ ++ + ++ + +++ ++ +E Q + + LFS + + P Sbjct: 463 -LLAYENAERILIAHMLKNNSVANQVQRKVGG-AFNIDEYQAIAAHLFSYYADGFEPNPS 520 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + + +L + + T E + ++ +Q KR + Sbjct: 521 SFIEYLEDDKLKRITSELA-------MMTITEEMSEQELADYIKQIKNYPKRL-----EV 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E+++ + ++ E + A + + ++ I Sbjct: 569 EKLKVERKKLEEAEEYVEAAKIAMEIIKIEQDIK 602 >gi|220912144|ref|YP_002487453.1| DNA primase [Arthrobacter chlorophenolicus A6] gi|219859022|gb|ACL39364.1| DNA primase [Arthrobacter chlorophenolicus A6] Length = 644 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 148/667 (22%), Positives = 251/667 (37%), Gaps = 65/667 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I ++ YV G Y CPFHDE++PSF G Y Sbjct: 5 IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGTYKGLCPFHDERSPSFTVRPQVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C GD ++F+ SF E+V++LAA G L D ++ + L+ Sbjct: 61 HCFGCGEDGDVIAFVQKQDHSSFHEAVEKLAARIGYELRYEDGGTGPSREEVGRRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A +FF L +L RG D A E F GYAP +L +HLR +GF+ Sbjct: 121 AHKIADEFFRDQLLTPGAGEARNFLFGRGFDRAAAEHFGCGYAPQGWDALLKHLRGRGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++ G+ +G+ YDRFR RLI+PI+ G I FG R L + + KYLN+PE Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIKDIAGDTIGFGARKLYEDDQGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV++ AG+ V++ Sbjct: 239 TTLYKKSQVLYGIDLAKKSIAK----------ERQLVVVEGYTDVMACHLAGITTAVATC 288 Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ + +V CFDGD G +AA +A + + + Sbjct: 289 GTAFGTEHIKIARRLLSDDGTGGEVVFCFDGDAAGQKAALRAFEEDQRFTA---QTYVAV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP + G A + LI PL + + + + +T + R + Sbjct: 346 EPTGADPCDLRQTRGDAAVQALISSRRPLFEFAIRASLKRHNLDTVEGRVAALREAAPVV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW---------------------- 450 I+D +R Y++ + L ++ + + Sbjct: 406 GQIRDAGIRPAYARELAGWLGMSVEEANRAVAVAMKRGSAGPQAGAGAPAAQQGGQAAGR 465 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIR 509 A S + + E L + PA+L + A R Sbjct: 466 PAEAGGPGVAAGPASGAVPSYHRPDPRDPVASMERQALEVALQEPALLSGAVWDRFAAAR 525 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGFGELLKQLDRQVRDAGLWSAT 566 + Q + + P + + L+ +L Sbjct: 526 FATPAFQAVHDAM-RATGPGMVTDPARWVEHVMHEVPEPLRPLVSELA---------VVP 575 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 A+ + Q Y + + ++R K + Q+ ++ + E L L + + Sbjct: 576 LPASTEEGVQKYCRDILSRLFELQITRVKADKMGQLQRLDPAADPEAFQRLNRELMMLEM 635 Query: 627 QIHQIES 633 + + S Sbjct: 636 ERRSLRS 642 >gi|299822899|ref|ZP_07054785.1| DNA primase [Listeria grayi DSM 20601] gi|299816428|gb|EFI83666.1| DNA primase [Listeria grayi DSM 20601] Length = 615 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 153/643 (23%), Positives = 288/643 (44%), Gaps = 42/643 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++I YV + N Y CPFH EKTPSF + K Sbjct: 4 RIPEEVIDRVRSEADIVDIISNYVQLKKAGRN-----YSGLCPFHGEKTPSFSISPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G+ SFL G SF+E+V++ A ++ V + + ++ Q Sbjct: 59 FHCFGCGKGGNVFSFLMEHDGLSFVEAVKKTAELSHVDVGIEWDDEPAEQKTEQSNDQFK 118 Query: 117 LIRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +I + +++ F+H+ L+ YL ERG+ +I F++G+AP+ ++ L + Sbjct: 119 MIDMHQLSAKFYHYILLETEEGSEALSYLKERGLSEQSIISFQIGFAPNHSSTITSFLAK 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + + AGLL+ +N DRFRNR++FPI++ R Q I F GR ++ KYLN Sbjct: 179 RGMNLDLAEIAGLLVRRENGD-LVDRFRNRIMFPIKNDRDQAIGFSGRLFNQDNGPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET +F+K LY+ A +++ I+L+EG+MDV++ AGV N V Sbjct: 238 TPETPIFNKRNVLYHLSDARQEIRR----------RKEIVLLEGFMDVIAASSAGVGNGV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GT+LT + L+ K++ +IV+C+DGD G+ A KA ++ G V + L + Sbjct: 288 ATMGTSLTTEHIGLIRKITNQIVICYDGDSAGIEATQKAGRMLEADPHFGLAV--LQLPQ 345 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF-NTPDERAELEIHLKNCINH 414 G+DPD FI+ YG FE + + + + P E+A I Sbjct: 346 GKDPDEFIQTYGPEKFEDIYAHNRSSWTAFLLSYLKQGKNLSNPQEQANYLEEAIMEIAK 405 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I R Y + + + + + R +H D + + S Sbjct: 406 IDQAIEREIYLKQLATEFDLSLETLRQQLADSLRRKPVANQHADMPYSEPIIFEES---K 462 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E LL +++ + Q + + +++ Q ++++L + E Sbjct: 463 RNKGALVISEEQLLKAMLDSRENFMQIRQLMEGTDFYHDDYQAIYTYLIGFYAEGNTPDT 522 Query: 535 EEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 L E+ F L+ ++ EA ++ +A K+ + + Sbjct: 523 NRFMDYLPEQEQAFKNLVATIEML-----------EAPEEQTTAAFRDYIASIKK-HVWT 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +++ E++K++ ++ ++ +A+ + ++ + + + E Sbjct: 571 KKRSELQKKMQRLESENDAKALIETLQEINRIDKLLTARQFDE 613 >gi|119504972|ref|ZP_01627049.1| DNA primase [marine gamma proteobacterium HTCC2080] gi|119459258|gb|EAW40356.1| DNA primase [marine gamma proteobacterium HTCC2080] Length = 638 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 172/658 (26%), Positives = 273/658 (41%), Gaps = 62/658 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I +I + V + N + ACCPFHDEKTPSF N K F Sbjct: 3 RIPQKFIDDLLDRVDIVEVIDRRVKLKKTGKN-----FSACCPFHDEKTPSFSVNPGKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119 YYCF C G+ L FL F E+V+ LA G+ +P + P + ++ Sbjct: 58 YYCFGCGAGGNALGFLMDYERLEFPEAVESLAQTVGLQVPKEELRPGQTPPQDTNRPILE 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +E AT F+ HSL K+ KR YL RG+ F++G+AP +L + Sbjct: 118 QLEQATRFYEHSLRKHPEAKRAVAYLKGRGLSGEIARAFRVGFAPPGWDNLLQTADNDAQ 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++ + G+L+ ++ +YDRFR+R++FPI +RG+VIAFGGR L + KYLNSPE Sbjct: 178 QIKRLTDGGMLV-TNDRGRTYDRFRDRIVFPILDARGRVIAFGGRVL-GDDKPKYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHK + LY + A + R I++VEGYMDV++L Q G+ V++L Sbjct: 236 TPVFHKSRELYGLYQARKSERSLNR----------IVVVEGYMDVIALAQYGIGYAVATL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E + L++ P +V CFDGD+ G +AA++A++ L + G + F+ + GED Sbjct: 286 GTATSEAHMERLFRHVPEVVFCFDGDEAGRKAAFRALESTLPVMQDGRQARFLFVPDGED 345 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R G E L + PL + L+ ++ +T D RA ++ I + Sbjct: 346 PDSLVRARGAEHLEHLFSSATPLEEFLFDWVAKDLDVSTLDGRARFSKQAAPFVHLIPEG 405 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------- 459 + Q++ DR + Sbjct: 406 VFKTLMYQSLADRTGIDIDSLKRLQAPLPDLQADETNSAQSGFSGEAGAYHDTDQGYSSD 465 Query: 460 ------------KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 P S L+ LL L+ +P + L Sbjct: 466 SDDAPPPGLDIEPYPDSEGASSEPHHDSLTPTSGSATQRLLGLLVLNPQLSSTLDATLMP 525 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 L + + Q + G+LL +L + Sbjct: 526 KE--QRRDIALLKDVIENINSQPDISTASLLGFWHGTPEGQLLTELAGR---------EP 574 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + R LS+ K+E A+ + L+ ++ ++ Sbjct: 575 IEDPDQLSELADALFQQLLREGPLSQLKQEAALLKAKPYETLGDSEKQELMRLMRDIR 632 >gi|145595937|ref|YP_001160234.1| DNA primase [Salinispora tropica CNB-440] gi|145305274|gb|ABP55856.1| DNA primase [Salinispora tropica CNB-440] Length = 632 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 149/648 (22%), Positives = 252/648 (38%), Gaps = 43/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+ +I V G+ CPFHDEK+PSF+ + ++ Sbjct: 12 RIRDEDIALVRERTSIAEVISDTVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-----VDPKIEKKEKIQTD 116 +YCF C GD + FL SF+ESV+RLAA G+ L P+ ++ + Sbjct: 68 WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARVGLQLRYVATDHTTPRARPQQGQRQR 127 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ A +F+ L + +L RG D A E + G+APD L HLRQ+ Sbjct: 128 LVAAHAAAVEFYRAQLTTPGARPAREFLARRGFDKAAAERYACGFAPDGWDLLTRHLRQQ 187 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GFS ++++ AGL + + DRFR RL++PIR G V+ FG R L + KYLN Sbjct: 188 GFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVVGFGARKLFDDDDSPKYLN 246 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET ++ K LY A + K + +++VEGY DV++ AGV V Sbjct: 247 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLAGVPTAV 296 Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA + +L + ++ I+ FDGD G +AA +A D + R Sbjct: 297 ATCGTAFGTDHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---RT 353 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP G+ A L+ PLVD + +T D R E Sbjct: 354 FIAVSPDGMDPCELRLAKGELAVRDLVASREPLVDFALRHVIGRHDLDTVDGRVEAMRRA 413 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + IKD++ R Y + + L + K + P+Q Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAAHAPGK-TNTASRGAPAQPQSP 472 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S +++ E L + P + + + Y N + + + + Sbjct: 473 SPADSPQVT-----VEREALKLALQAPVLAGPMFDAVEATEYRNPVHVAVRAAVAAAGGA 527 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + + L ++ L ++ Y ++ Sbjct: 528 AAATGGAVWIESVRHACEDLAAQALVGELAVEPLRI------DGELDPRYVSVTMARLQW 581 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ + E++ +I ++ ++ L + + Q A Sbjct: 582 GAVTGRIRELKSRIQRINPVSSKDEYFAAFGELLSLEQHARALREQAA 629 >gi|328882303|emb|CCA55542.1| DNA primase [Streptomyces venezuelae ATCC 10712] Length = 630 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 151/637 (23%), Positives = 268/637 (42%), Gaps = 45/637 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + LI Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPGHQRGERIRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA F+ L + + +L ERG D A F +GY+P L +LR KGFS Sbjct: 120 AHKVAAQFYADQLGSPEAEIGRAFLAERGFDQAAAAHFGVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL D DRFR RL++PI+ G+++ FG R L ++ KYLN+PE Sbjct: 180 DKELILSGL--SQDGRRGPIDRFRGRLMWPIKDVGGEIVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K R ++VEGY DV++ AGV +++ Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKVSRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGGDHIKILRRLLMDNGSARVIFTFDGDSAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + ++ + TP RA + Sbjct: 345 PDGMDPCDLRLAKGDEAVVDLVQPRTPLFEFALRQIVKRYDLETPAGRAAALDEAAPVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM------ 467 IK+ ++ + + L L +++ + W ++ + + Sbjct: 405 RIKNIGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGKGPERQQGPQRGYDTAA 464 Query: 468 ---QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 S L E LL + P ++ + + + + Sbjct: 465 PAPAPSGPALNLRSPAHRTERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQCVQD 524 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 P + + E + ++ L ++ +++ T + + Y + Sbjct: 525 AGGATGA--PADYLDAVREAAPNDTVRALVTELAVETIFAKTVD-------EAYAGDQLV 575 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 R R + R+ +++ +A++ A+G+ E+ A + + L Sbjct: 576 TVRLRAVDRRIRDVQGTLARLGAQGDPEQLAAVQNEL 612 >gi|294501281|ref|YP_003564981.1| DNA primase [Bacillus megaterium QM B1551] gi|294351218|gb|ADE71547.1| DNA primase [Bacillus megaterium QM B1551] Length = 602 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 159/632 (25%), Positives = 282/632 (44%), Gaps = 37/632 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + + I ++I YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEVIDRIRHSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 Y+CF C G+ SF+ L G SF E+ Q+LA +P + P E +K +I Sbjct: 59 YHCFGCGAGGNSFSFIMELEGLSFTEAAQQLAEKGDIPFEHEIHPHEEDNQKPSNKMIEA 118 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ F+HH L + + YL RG I+ F++G+A DS + + L ++GF+ Sbjct: 119 HELLKKFYHHLLVNTKEGQDAYDYLINRGFSREIIDEFEIGFALDSWEFVSKFLTKRGFN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238 +++ AGL+I + + T +DRFR+R++FPI +G+ IAF GR L + + KYLNSPE Sbjct: 179 PQEMEHAGLIIKRNQNETYFDRFRDRIMFPIADLQGKTIAFSGRLLKEIKGQPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K + LYNF A +++K + +IL EG+ DV+S +AG N ++++ Sbjct: 239 TSIFNKSRTLYNFHRAKKHIRK----------NQQVILFEGFADVISAVKAGCPNAIATM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q +++ + +++C+D D G+ AA+KA + G V ++ G D Sbjct: 289 GTALTEEQAKIIRRNVESVIICYDADSAGIEAAHKATAI---LTNVGCTVKIAVMPDGYD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +I+ YG F+ +I SL + + R+ ER + + I+ + Sbjct: 346 PDDYIKEYGAEKFQNDVINSSLTFMAFQMRYLRRKRNLQNESERMQYIEDVLKEISLLTK 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R +Y + + + R KK + + + +VK L Sbjct: 406 AVERDHYLRQLAQEFSISLDALKEQQYQVYRTEKKKKDNDSPNRN--NINRQPVVKRSLL 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + L +++ E + L +L++ + E P Sbjct: 464 PAYQNAERFLIAHMLKDKDVAFRIQDRL-QGQFNVEEHRALVLYLYAYYEEGHEPNPSGF 522 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +RL E + + + Y Q + +Y + + ++ Sbjct: 523 IERLPESS--------LSSLASELAMMSINDELSEQALNDYIQTILIYPQRVAIEKK--- 571 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E + + + + K A + + ++ + Sbjct: 572 -EAEKQEAERQKDYLKAATIAMEILQLKKTLK 602 >gi|295706628|ref|YP_003599703.1| DNA primase [Bacillus megaterium DSM 319] gi|294804287|gb|ADF41353.1| DNA primase [Bacillus megaterium DSM 319] Length = 602 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 159/632 (25%), Positives = 281/632 (44%), Gaps = 37/632 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + + I ++I YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEVIDRIRHSVDIVDVISDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 Y+CF C G+ SF+ L G SF E+ Q+LA +P + P E +K +I Sbjct: 59 YHCFGCGAGGNSFSFIMELEGLSFTEAAQQLAEKGDIPFEHEIHPHEEDNQKPSNKMIEA 118 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ F+HH L + + YL RG I+ F++G+A DS + + L ++GF+ Sbjct: 119 HELLKKFYHHLLVNTKEGQDAYDYLINRGFSREIIDEFEIGFALDSWEFVSKFLTKRGFN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238 +++ AGL+I + T +DRFR+R++FPI +G+ IAF GR L + + KYLNSPE Sbjct: 179 PQEMEHAGLIIKRNQDETYFDRFRDRIMFPIADLQGKTIAFSGRLLKEIKGQPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K + LYNF A +++K + +IL EG+ DV+S +AG N ++++ Sbjct: 239 TSIFNKSRTLYNFHRAKKHIRK----------NQQVILFEGFADVISAVKAGCPNAIATM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q +++ + +++C+D D G+ AA+KA + G V ++ G D Sbjct: 289 GTALTEEQAKIIRRNVESVIICYDADSAGIEAAHKATAI---LTNVGCTVKIAVMPDGYD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +I+ YG F+ +I SL + + R+ ER + + I+ + Sbjct: 346 PDDYIKEYGAEKFQNDVINSSLTFMAFQMRYLRRKRNLQNESERMQYIEDVLKEISLLTK 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R +Y + + + R KK + + + +VK L Sbjct: 406 AVERDHYLRQLAQEFSISLDALKEQQYQVYRTEKKKKDNDSPNRN--NINRQPVVKRSLL 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + L +++ E + L +L++ + E P Sbjct: 464 PAYQNAERFLIAHMLKDKDVAFRIQDRL-QGQFNVEEHRALVLYLYAYYEEGHEPNPSGF 522 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +RL E + + + Y Q + +Y + + ++ Sbjct: 523 IERLPESS--------LSSLASELAMMSINDELSEQALNDYVQTILIYPQRLAIEKK--- 571 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E + + + + K A + + ++ + Sbjct: 572 -EAEKQEAERQKDYLKAATIAMEILQLKKTLK 602 >gi|227833615|ref|YP_002835322.1| DNA primase [Corynebacterium aurimucosum ATCC 700975] gi|262184617|ref|ZP_06044038.1| DNA primase [Corynebacterium aurimucosum ATCC 700975] gi|227454631|gb|ACP33384.1| DNA primase [Corynebacterium aurimucosum ATCC 700975] Length = 642 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 139/653 (21%), Positives = 252/653 (38%), Gaps = 47/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF DEKTPSFH +G+ Sbjct: 5 RIPDSDIQAIRERAPIDEIVGEYVQLKPAG----YDSLKGLSPFKDEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + +++ + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARDEKPGTRRRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ L+ + +L +RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAAHEFYRQQLETPQAAAGREFLLDRGFSKEIIYEFECGYAPEGWDTATKHLLRMGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+P Sbjct: 181 SFEELDAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+HK K L+ A + ++VEGY DV+++ AGV+ V+S Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EQHQAVVVEGYTDVMAMYAAGVKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGADHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + + S ++ + R + Sbjct: 346 SVAPDGMDPCDLRLERGDAAVRDLVADRIPMFEFVIRSVISDFSIDSAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+D+ L+ Y++ + + + + K + Q + Sbjct: 406 VVAQIRDEPLQREYARRLAGWVGWPDPEEVLHQVRQEARKPKKEQRPRFASLEQTSSAPA 465 Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-- 522 + P RE L + +P I + + + Y N + + + Sbjct: 466 QSNAPVMHIPGPREPHLWPQREALKLALQYPQIAGSYFDGITEDAYSNEAYRTIRRAIST 525 Query: 523 ---FSDFVEQKYFLP-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + EQ + + + + +L N + Y Sbjct: 526 LGGVTAGAEQPGVEWLAAVAGEMPDLMARNFVSELA-----VEPIKLGETGNPDTDLEAY 580 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + + Q +++ Q+ ++ + E L + L + ++ Sbjct: 581 ADSVLSRLQEARVGDQVAQLKAQLGRMRPSDDEESYNSLFADLVALEQARREL 633 >gi|54023437|ref|YP_117679.1| DNA primase [Nocardia farcinica IFM 10152] gi|54014945|dbj|BAD56315.1| putative DNA primase [Nocardia farcinica IFM 10152] Length = 635 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 136/642 (21%), Positives = 248/642 (38%), Gaps = 30/642 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 4 RLPDRDIAAIRDRVRIEDVVGEYVALKRAGA----DSMKGLCPFHDEKSPSFHVRPNHGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD FL + F+E+V++LA G + + + L+ Sbjct: 60 FHCFGCGEGGDVYKFLQKIEHIGFVEAVEQLADRVGYQINYEGGGTSVQRDRGTRARLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L + YL +R D+ A +F GYAP +L +HL +KGF Sbjct: 120 ANAAAHEFYMAQLAEPEAEAARKYLTDRDFDAAAARLFGCGYAPAGWDTLTKHLLRKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIR+ G+VI FG R L +++ KY+N+P Sbjct: 180 FKELEAAGLSRQ--GKRGPIDRFHRRLLWPIRNLGGEVIGFGARKLFDDDTMPGKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K + L+ A + K S ++VEGY DV+++ AGV+ V+S Sbjct: 238 ETLLYKKSQVLFGLDHAKREIAK----------SRQAVVVEGYTDVMAMHLAGVKTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLL 353 GTA + + +L +L + + + Sbjct: 288 CGTAFGDEHMAILRRLLMDDNFWRGEIIYTFDGDAAGQAAAIKAFSGDQKLAGQTYIAIA 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DP + G A L+ PL + + + +T + + E + Sbjct: 348 PDGQDPCELRQRSGDAAVRDLVARRTPLYEFVIRGLLAEHDLDTVEGQVEALRRAVPVVA 407 Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IKD R Y+ + + Q + + + R + + Sbjct: 408 QIKDNATRKAYATRLAGWVGWDDIQTVVRRVGEEAKRGRTGIAPRRAPAAPAEVAEHPAA 467 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + L + L + +PAI + L + + + + + Sbjct: 468 RPNPNDPVLLPQRQSLCAALQYPAIAGAVFDALEPEVFTHPAYAAIRTMIAEAGGASCGL 527 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 E + + L+ L ++ A L ++ D+ + LA + + Sbjct: 528 SGAEWVNAVADATDDLTLRALVSELAGAQL----PVKSVNDIPRFITGVLA-RAQEAYVG 582 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++ ++ +++A + ++ L L + +E+Q Sbjct: 583 RQIATLKSKLQRLSANEQTDEYLALFGDLVALEQYRKSLEAQ 624 >gi|291546783|emb|CBL19891.1| DNA primase [Ruminococcus sp. SR1/5] Length = 574 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 157/588 (26%), Positives = 259/588 (44%), Gaps = 35/588 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ + I ++I QYV RR + Y+ CPFH+EKTPSF SK Sbjct: 1 MRYSDDIIEEVRMKNDIVDVISQYVKLTRRGS-----SYFGLCPFHNEKTPSFSVTPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF E++ LA AGV LP + +K + + +L+ Sbjct: 56 MYYCFGCGAGGNVYNFIMEYENYSFGEALSHLADRAGVELPKIEYSREAREKAEQRANLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F++ L+ K + YL RG+ I F LGY+ L ++L+ KG+ Sbjct: 116 EINKLAAQYFYYQLRREGGKTAYGYLTGRGLSEETIRKFGLGYSDKYSDDLYKYLKGKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E + E+GL YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 176 SDELLRESGLFNVD-ERRGMYDKFWNRVIFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A +++IL EGYMDV+++ QAG N V+SL Sbjct: 234 TKIFDKSRNLYGLNVAR------------TTRKNYLILCEGYMDVIAMHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + ++L +D D G+RAA +AI + G V L +D Sbjct: 282 GTALTSGHASLVKRYTKEVLLLYDSDGAGIRAALRAIPI---LREAGVTSRVVSLKPWKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ + ++ + + + P + + + + D+ Sbjct: 339 PDEFIKNEGAEAFEERLDRAMDSFMFRVHIAEQEFAMDAPQGQNQFFERCAGMLLELSDE 398 Query: 419 KLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y +AI R + + + K + + K Sbjct: 399 LERNLYIEAIVKEYGRYGVGTEDIRKRVNTLALKGTPAEKRIQPKSGTPETKKKESAADK 458 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + +L L+N+P I ++ + ++ + +++ LF E + P Sbjct: 459 -------AQKLMLTWLVNYPGIFEQVEKYISPSDFVVPLYKEVAQMLFEQHKEGET-NPG 510 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 ++ + + L A + + +++L Sbjct: 511 KLLNAFTDSEEQREVASLFNATIHLENEGEQQRAFSDALLRIKEESLK 558 >gi|296394222|ref|YP_003659106.1| DNA primase [Segniliparus rotundus DSM 44985] gi|296181369|gb|ADG98275.1| DNA primase [Segniliparus rotundus DSM 44985] Length = 619 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 147/642 (22%), Positives = 258/642 (40%), Gaps = 44/642 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ + I+ ++G YV CPFHDE+TPSF S+GFY Sbjct: 2 IAPADIEAIRERASIAEVVGDYVSLRPSG----HDRMVGLCPFHDERTPSFQVTPSRGFY 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD FL + SF+++V+ LA L D +++ + + LI Sbjct: 58 HCFGCGEGGDIYRFLQNIEHVSFVDAVEILADRIKYQLTRTDDSVDRAQDRGTKRRLISA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L +L RG D E F G+AP L H+R KGF+E Sbjct: 118 NQAAAEFYASRLMGEEAAPARDFLKGRGFDREISERFGCGFAPRGWDHLVRHMRAKGFAE 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 ++ EAGL G DRFR RL++PIR++ +VI FG R + + + KYLN+PET Sbjct: 178 SELEEAGLARKGQRGM--VDRFRGRLLWPIRNASREVIGFGARRIFEDDDGPKYLNTPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K L+ A + + +++VEGY DV+++ AGV V+S G Sbjct: 236 KLYKKSHVLFGLDQAKREIA----------TKHQVVVVEGYTDVMAMHAAGVPTAVASCG 285 Query: 300 TALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 TA + ++ ++ FDGD+ G AA KA + + R L Sbjct: 286 TAFGADHIAVIRRLLLDDEHSRGEVIYTFDGDEAGKAAALKAWEGDQSLVA---RTFVAL 342 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + G DP G A L+ + +PL++ + + R + Sbjct: 343 MPAGLDPCDTRLQQGDDALRGLVAQRVPLLEFATRAALAEFDLANAEGRVGALRRTVPMV 402 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IKD LR Y++ + + + R PS+R Sbjct: 403 AKIKDVALRDEYARQLAGWVGWDDTAQVLSRVREEAGEAPARRAGGAPAPSRR------- 455 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + ++ S RE+ L L+ HP ++ EQ+ ++ + + + + Sbjct: 456 RPSSTRDWSQRES--LKALLQHPKLIAEQFAGVSPEVFAREDYRAIRDAALRAMDAAAGL 513 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + ++ E L++L ++ + ++ ++ Y A+ + Sbjct: 514 EGQSWVQAVRDQADDERLQKLVAELAVEPIATSQSQMAK------YVGAVLARLELFDIE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q E++ ++++ + + + L + ++ Q Sbjct: 568 DQIAELKSELSRNEGSADGGRITEVFGELVALESFRRALQKQ 609 >gi|323490071|ref|ZP_08095292.1| DNA primase [Planococcus donghaensis MPA1U2] gi|323396367|gb|EGA89192.1| DNA primase [Planococcus donghaensis MPA1U2] Length = 599 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 150/632 (23%), Positives = 287/632 (45%), Gaps = 41/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I +++G+YV +R N ++ CPFH E TPSF K Sbjct: 4 RVPEEVIEKIRSSTDIVDVVGEYVQLTKRGRN-----WFGLCPFHGESTPSFSVTADKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119 ++CF C G+ ++FL + +F +++ RL + AG+ + + P + K LI Sbjct: 59 FHCFGCGAGGNVITFLMDIENLTFQDALSRLGSRAGIDVDIQAPADSGPVQSKEDQQLIL 118 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E A D +HH L + YL+ RG IE ++G++ + L++KGF Sbjct: 119 MHEFAADMYHHILLNTEEGQEALDYLENRGFTREIIEKNRIGWSLPEWNYMASSLKRKGF 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 SEE++ +GL I + S+ +DRFR R++FPI + G+VIAF GR L + KY+NSP Sbjct: 179 SEEELETSGLAIAREQSSGYFDRFRGRIMFPIMNETGKVIAFSGRVLEHTKQEAKYMNSP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +F K + LYN A + ++K+ + IIL EG+MDV++ +AGV N +++ Sbjct: 239 ESPIFQKSQVLYNVHHARSAIRKNRK----------IILFEGFMDVIAAGKAGVDNALAT 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT +R + + + +V+CFDGDD G AA +A + +V +L Sbjct: 289 MGTSLTAQHIRQMKRFAQEVVICFDGDDAGWEAAKRAA---ISLNEENFKVEVAVLPGKM 345 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD ++R G AF+ +I + + +++F ++ + + + Sbjct: 346 DPDDYVRDNGAEAFKDQIIGKPHAFLAFAMMHARRHKNFQYENDLLQYIQEVLQLLAGRS 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R Y + + + +++ + Y K + ++ P ++++ + K Sbjct: 406 SPLERDLYIKQLS------VETGLSQEAILQHYRKLENKTIERNRPEPAIIKTPKKEPKR 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL + P+++ + E I + + E Q L+ L + E + Sbjct: 460 ITSLHRAERMLLSHALADPSVMNKLVVEDNGIPFVSEEFQALYVQLLGFYEEWDKADFHK 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + +L+ + +A +E + + L + + + +Q Sbjct: 520 FLETLQDAELRKLV-----------METALSERDPEHADEEIADCLK-HLQKHRIEQQIN 567 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +Q + + + ++ +L + + + Sbjct: 568 LKIQQSKEAEKQHDLKRALLLAQEVIALRKSL 599 >gi|222053801|ref|YP_002536163.1| DNA primase [Geobacter sp. FRC-32] gi|221563090|gb|ACM19062.1| DNA primase [Geobacter sp. FRC-32] Length = 589 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 150/635 (23%), Positives = 276/635 (43%), Gaps = 51/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P D I ++ I ++ YV + N Y CPFH EKT SF+ N ++ Sbjct: 1 MSMIPDDKINEVRERASILEIVSDYVSLRKSGAN-----YQGICPFHGEKTGSFNVNPAR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDL 117 G ++CF C V G+ +SF+ + G SF E+V+ LA GV + +++ + L Sbjct: 56 GIFHCFGCGVGGNAISFIMKIEGLSFPEAVKFLAKRVGVTIEERPRTATEKRQSDERELL 115 Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ A F+ L + + YL+ RG+DS E + +GYAPD SL HL Q Sbjct: 116 YKINGQAAAFYRQLLLNDPAGEAGRQYLERRGVDSATSEAYGIGYAPDKWDSLTRHLEQL 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + GL I YD FRNRL+F I G+ I FGGR L KY+NS Sbjct: 176 RVPLDLAEKLGL-IKRREGGRHYDAFRNRLLFVIADMHGRPIGFGGRVL-DDSLPKYINS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK + L+ + +++ I+VEGY D L+L QAG++NVV+ Sbjct: 234 PESPIYHKSEVLFGLNLSKYAMREKGNG----------IIVEGYFDHLALYQAGIRNVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTALT ++LL + + ++ FDGD G +A ++++L L + + L G Sbjct: 284 TCGTALTTGHIKLLQRYANKVYTLFDGDSAGRKATLRSMELFLDEK---LPASVIELPPG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD+F++ G AF + ++ P+ + + T + + L + I Sbjct: 341 DDPDTFLKTQGDGAFAGHLAKAKPIFEFFFSELLGQYDSGTVEGKVGTIEALTPHLMKIV 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + R Y + I +L ++ + A R++ P Sbjct: 401 NPIERDLYIKEISRKLGVDPRQMQKKIGRSPVSSADLAVPRERVKPRSNKGP-------- 452 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E L+ + + +++ A + +L + + + + Sbjct: 453 -------EETLISLMGKYAGVIKRVRDYGAANLFS-ADLLPIAEAIMAHNDSEAGIDWAL 504 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +++ + + R AG++ + +D + + Q R L + Sbjct: 505 LLEQIDST---------EERSRLAGIFMDDDHLDEIDANKAFDQCRMSRDRSMLKDGDVK 555 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E++K+++++ + ++E+ ++ L + + Q+ Sbjct: 556 ELKKELSRLDS--DSERYWEILRKLDTLRNKKSQL 588 >gi|260599323|ref|YP_003211894.1| DNA primase [Cronobacter turicensis z3032] gi|260218500|emb|CBA33677.1| DNA primase [Cronobacter turicensis z3032] Length = 592 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 175/628 (27%), Positives = 292/628 (46%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 15 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 69 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L Sbjct: 70 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPTQIERHQRQTLYE 129 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ +L+ + +YL +RG+ IE F +GYAP + + + Sbjct: 130 LLDGLNGFYRQALQAQSGEPARHYLAKRGLSDSVIERFAIGYAPPGWDNALKRFGNNSEN 189 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ +++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 190 RKSLIDAGMLV-TNDNGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 247 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + + +++VEGYMDV++L Q + V+SLG Sbjct: 248 DIFHKGRQLYGLYEVQQS----------DPNPPRLLVVEGYMDVVALSQYDINYAVASLG 297 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +++L++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 298 TATTAEHIQMLFRATNTVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDP 357 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I+ + + Sbjct: 358 DTLVRQEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLISQVPGET 417 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + Q P+ L ++++ Sbjct: 418 LRIYLRQELGNKLGILDDSQLERL-------MTRQADNSQTRPAPTLKRTTM-------- 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + LA + +L++ L + + Q ++ + Sbjct: 463 -----RILIGLLVQNPELAPLVP-SLAALDKTKLPGLELFTELVNTCLSQPGLTTGQLLE 516 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L W + +I + + AL + +L + E+ Sbjct: 517 HYRGTKEAATLEKLST-------WDDIADKDI--AEKTFTDALD-HMFDSVLELRLTEL- 565 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 IA+ +G + I+ E + Sbjct: 566 --IARSRTQGLNAAEREEVRIITEARAK 591 >gi|227548806|ref|ZP_03978855.1| DNA primase [Corynebacterium lipophiloflavum DSM 44291] gi|227079136|gb|EEI17099.1| DNA primase [Corynebacterium lipophiloflavum DSM 44291] Length = 631 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 135/651 (20%), Positives = 263/651 (40%), Gaps = 50/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF DEKTPSFH ++G+ Sbjct: 5 RIPDSDIQAIRERAPIDEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPARGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + +F E+V+ +A G + ++ + L+ Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQLTFPEAVEAVAEQIGYHINYRGGSTGARDVKPGTRARLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ L+ + +L +RG D I F+ GYAPD +L +HL +KGF Sbjct: 121 AANKAAHEFYRKQLEKPEAEVGRQFLLDRGFDQDTIYHFECGYAPDGWDTLTKHLLRKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +++ +AGL D+FR RL++PI+ G VI FG R L + + KY+N+ Sbjct: 181 DVQELQDAGL--STMGRRGPIDKFRRRLLWPIKDVAGNVIGFGARKLFDDDPMGKYMNTS 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T+L+HK K L+ A + + ++VEGY DV+++ AGV V++ Sbjct: 239 DTMLYHKSKVLFGLDLAKKSIA----------TEHQAVVVEGYTDVMAMHAAGVTTAVAA 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + + ++ ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGKDHMSIIRRLMLDDNYFRGELIYTFDGDEAGQKAAMRAFEGDQAFTG---QSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G +A L+ +P+ + + +N S +T + R + Sbjct: 346 AVAPEGMDPCDLRLGKGDSAVRDLVASRVPMYEFVLGTLLQNYSLDTAEGRLQALRRTVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + I D L+ Y++ + + + + + + K++ R Q Sbjct: 406 VVAEISDPVLQTEYARRLAGWVGWPNPGEVISQVRDEAKKPKKSKRSFSPRAQATQPTNT 465 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 LV + L + +P + + + + + N +++ + Sbjct: 466 DAPLLVAPAPDDSLLWPQREALKIALQYPDVAGDYFDGINPDAFTNGAYRQVRDAM---- 521 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQAL 582 + + E + ++ Q+RD + +E + ++ + Y ++ Sbjct: 522 --------GAVGSVIAVSSGVEWISEVAGQMRDLAGRNFVSELAVEEIHADDIEAYADSV 573 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + Q +++ Q+ ++ + L S L + ++ + Sbjct: 574 FSRLQEARVGDQIAQLKAQLERMRPADDERAYNALFSDLLALETARRELNN 624 >gi|294634614|ref|ZP_06713148.1| DNA primase [Edwardsiella tarda ATCC 23685] gi|291091944|gb|EFE24505.1| DNA primase [Edwardsiella tarda ATCC 23685] Length = 582 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 178/626 (28%), Positives = 289/626 (46%), Gaps = 57/626 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA +AG+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGNGPSQMERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E ++ +L+ + YL RG+ ++ F +GYAP + + ++ Sbjct: 119 LMEGLCSYYQQALRQPGATQAQSYLAGRGMSQAIMDRFAIGYAPPGWDNALKRFGREAAG 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ SYDRFR+R++ PIR RG+VIAFGGR L G + KYLNSPET Sbjct: 179 RLALNDAGMLV-NNDNGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + AL + + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLFGLYEALQHAPQPAR----------LLVVEGYMDVIALAQYGINYTVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD+ G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G AFE+ + + PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGTDAFEQRMNAAHPLSTFLFDTLLPQVDLSTPDGRAKLSALALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y QA+ +L L + + KN + K + Sbjct: 407 LRLYLRQALGQKLGILDDSQLEKLLPQRNPAVKNYQPPRLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +PA+ E + L L+ L + Q ++ Sbjct: 452 -----RILIALLVQNPALASEVPTLEGLRQHALPGLP---LFIELVETCLAQPGLSTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + L+ L + E + + Y L + Sbjct: 504 LELYRDNKYAPQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QR 550 Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623 +E IA+ +G + L+E Sbjct: 551 LEHLIARARTEGLTPAEREEVRSLNE 576 >gi|300858931|ref|YP_003783914.1| DNA primase [Corynebacterium pseudotuberculosis FRC41] gi|300686385|gb|ADK29307.1| DNA primase [Corynebacterium pseudotuberculosis FRC41] gi|302206631|gb|ADL10973.1| DNA primase [Corynebacterium pseudotuberculosis C231] Length = 638 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 130/648 (20%), Positives = 249/648 (38%), Gaps = 38/648 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF +EKTPSFH + G+ Sbjct: 5 RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 ++CFS GD SFL + +F E+V+ A + + + + LI Sbjct: 61 FHCFSTGKGGDVFSFLMEMEHLTFPEAVEACAEKIHYQINYQGGTTGARREEPGTRRRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A F+ L+ +L +RG I F+ GYAP+ L ++L +KGF Sbjct: 121 EANKTAHAFYREQLETPEAATARQFLLDRGFSQQHIYAFECGYAPEGWDVLTKYLLRKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++ AGL DRF RL++PI+S G VI FG R L + KY+N+P Sbjct: 181 DFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + + ++VEGY DV+++ AG+ V++ Sbjct: 239 ETLLYKKSKVLFGLDNAKKDIA----------QNHQAVVVEGYTDVMAMHAAGITTAVAA 288 Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E L++L + ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGEEHLQILRRYMLDDSYFSGSLIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + S ++ + R + Sbjct: 346 AVAPEGMDPCDLRLSKGDAAVRDLVAQRVPMFEFIIRTLIAGYSLDSVEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-------QKGPS 463 + IKD+ L+ Y++ + + + + +NA S Sbjct: 406 IVADIKDRALKTEYARLLSGWVGWPDPNEVIQQVRVAERRPRNAPKAKRATRFDANSNSS 465 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + + +V + L + +P + + +L D + N L + Sbjct: 466 EGIATALMVLPDRKDPRLWPQREALKLALQYPHVAGRYFDDLPDDAFSNETYAALNVAIA 525 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + K L ++ + T + + + + L Sbjct: 526 QAGGCANADGGAAWLAAVSDCVHDLVGKSLVSELAVEPVHIETEDEVENGLLKHIDKTL- 584 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + Q ++ ++ ++ + + + L + ++ Sbjct: 585 SRLQEQRVGNQIALLKGKLQRMRPSDDEVAYNSMFADLVALEQSRREL 632 >gi|302331180|gb|ADL21374.1| DNA primase [Corynebacterium pseudotuberculosis 1002] gi|308276874|gb|ADO26773.1| DNA primase [Corynebacterium pseudotuberculosis I19] Length = 640 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 130/648 (20%), Positives = 249/648 (38%), Gaps = 38/648 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF +EKTPSFH + G+ Sbjct: 7 RIPDSDIQAIRERTPIEEIVGEYVQLKPAGA----DSLKGLSPFKEEKTPSFHVRPNHGY 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 ++CFS GD SFL + +F E+V+ A + + + + LI Sbjct: 63 FHCFSTGKGGDVFSFLMEMEHLTFPEAVEACAEKIHYQINYQGGTTGARREEPGTRRRLI 122 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A F+ L+ +L +RG I F+ GYAP+ L ++L +KGF Sbjct: 123 EANKTAHAFYREQLETPEAATARQFLLDRGFSQQHIYAFECGYAPEGWDVLTKYLLRKGF 182 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++ AGL DRF RL++PI+S G VI FG R L + KY+N+P Sbjct: 183 DFKELEAAGL--STMGRRGPIDRFHRRLLWPIKSVSGDVIGFGARKLFDDDKLGKYMNTP 240 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + + ++VEGY DV+++ AG+ V++ Sbjct: 241 ETLLYKKSKVLFGLDNAKKDIA----------QNHQAVVVEGYTDVMAMHAAGITTAVAA 290 Query: 298 LGTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E L++L + ++ FDGD+ G +AA +A + + Sbjct: 291 CGTAFGEEHLQILRRYMLDDSYFSGSLIYTFDGDEAGQKAAMRAFEGDQKFTG---QSYV 347 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + S ++ + R + Sbjct: 348 AVAPEGMDPCDLRLSKGDAAVRDLVAQRVPMFEFIIRTLIAGYSLDSVEGRLQALRRAVP 407 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-------QKGPS 463 + IKD+ L+ Y++ + + + + +NA S Sbjct: 408 IVADIKDRALKTEYARLLSGWVGWPDPNEVIQQVRVAERRPRNAPKAKRATRFDANSNSS 467 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + + +V + L + +P + + +L D + N L + Sbjct: 468 EGIATALMVLPDRKDPRLWPQREALKLALQYPHVAGRYFDDLPDDAFSNETYAALNVAIA 527 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + K L ++ + T + + + + L Sbjct: 528 QAGGCANADGGAAWLAAVSDCVHDLVGKSLVSELAVEPVHIETEDEVENGLLKHIDKTL- 586 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + Q ++ ++ ++ + + + L + ++ Sbjct: 587 SRLQEQRVGNQIALLKGKLQRMRPSDDEVAYNSMFADLVALEQSRREL 634 >gi|295092058|emb|CBK78165.1| DNA primase [Clostridium cf. saccharolyticum K10] Length = 598 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 153/636 (24%), Positives = 268/636 (42%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ I ++I YV ++ +N Y+ CPFH EK+PSF + SK Sbjct: 1 MYYPEEVIEEVRTRSDIVDIISGYVKLQKKGSN-----YFGLCPFHHEKSPSFSVSQSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C V G+ +F+ SF E+V+ LA +GV LP + + ++ L+ Sbjct: 56 MYHCFGCGVSGNVFTFVMEYENYSFREAVELLAERSGVKLPKVEYSREARAQADLRAALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A ++F++ LK + + + YL R + I F LG+A + L L+ KG+ Sbjct: 116 EINKLAANYFYYQLKQPQGEAGYRYLTGRELTDQTIRHFGLGFANKTSDDLYRFLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + E GL+ S D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 DDSLLKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + +++L EGYMDV+++ QAG N V+SL Sbjct: 233 TKLFDKSRNLYGLNFAR------------LSREKYMLLCEGYMDVIAMHQAGFTNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL + + +++L +D D G++AA +AI + G V + + +D Sbjct: 281 GTAFTAQHAALLKRYTDQVILTYDSDGAGVKAALRAIPI---LKAVGMSVKVLNMKPCKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF + I E+ + S P+++ + + Sbjct: 338 PDEFIKSLGADAFRQRISEARNSFLFEIDTIRQKYSMEDPEQKTAFYNETARKLLEFSEA 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVK 473 R Y QA+ ++ + G + + + K Sbjct: 398 LERDNYIQAVSREYFISYEDLKRLVNSLGSRYGSALPGTRADREGVGETYAQKPREIQKK 457 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E LL LI P + ++ + + ++ +F + + + Sbjct: 458 RDREEGIRQSERLLLTWLIEEPRLFEKIRGIIGPEDFVKPLYRRAAEMVFEGYEKGEVNP 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + + G + L + L + + D +L Sbjct: 518 AAILNHFIDDEGNYREVAALFNASLNDSLSNEEQKKAFAD---------------TVLKV 562 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +K ++ Q + E ++ + L +HI + Sbjct: 563 KKSSLDYQSRNASDLNELQRIIKEQAELANLHISLE 598 >gi|302670284|ref|YP_003830244.1| DNA primase DnaG [Butyrivibrio proteoclasticus B316] gi|302394757|gb|ADL33662.1| DNA primase DnaG [Butyrivibrio proteoclasticus B316] Length = 592 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 154/601 (25%), Positives = 274/601 (45%), Gaps = 40/601 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I +++GQYV ++ N Y+ CPFH+EK+ SF + K Sbjct: 1 MRYSDEIIEEVRSRNDIVDVVGQYVHLQKKGAN-----YFGLCPFHNEKSGSFSVSGHKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118 YYCF C G+ ++FL +F E+V++LA AG+ LP D P + + L+ Sbjct: 56 MYYCFGCGAGGNVITFLMKYDNLTFTEAVKQLADRAGIKLPDEDDSPAAKAMRDKRQILL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++++ L+ ++ Y R + ++ F LGY+ + L +HL+ G+ Sbjct: 116 DINKEAAKYYYYQLRGRNGQKGMEYFRGRKLTDETMQHFGLGYSNITSDDLVKHLKSLGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +II+AGL D ++D+F NR++FPI+ + +VI FGGR L KYLNSPE Sbjct: 176 EDSQIIDAGLA-SYDEKYGTHDKFWNRVMFPIQDASQKVIGFGGRVL-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NL+ A N + ++I+ EGYMDV+++ QAG V+SL Sbjct: 234 TLIFDKSRNLFGLNYAKNS------------RAGYMIICEGYMDVIAMHQAGFTMAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q +L + + ++L +D D+ G +AA + I + G + + L +D Sbjct: 282 GTAFTTGQAMILKRYTDEVILSYDSDEAGTKAALRGIGI---LKEAGLKGKVLDLRPHKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ GK AFE+ I + + +R+ P+++ E + + ++ Sbjct: 339 PDEFIKNEGKEAFEERIRNAESTFFFEVRVMESHRNLADPEDKTEFYRDIARKLCEFEEP 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y++A+ R + Y P++R K K Sbjct: 399 LERENYTEAVAARYNIAIADLKGLVASYAGRA-------GMVTPARRPESGIQSKKKPED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL L + P I + + + ++ +K+ + +F+ F P I Sbjct: 452 GARKNQRLLLTWLTDEPDIYPKVAAWVTPDDFSDDLYRKVATEVFTGMANGN-FSPAAIL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E + ++ + + D R+ + + L + RQK+E+ Sbjct: 511 DHFTEEEQYGQVAEMFN--------TNLVDIETKDQRRKAFRDIILGVKQAGYDRQKKEL 562 Query: 599 E 599 + Sbjct: 563 K 563 >gi|114321664|ref|YP_743347.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1] gi|114228058|gb|ABI57857.1| DNA primase [Alkalilimnicola ehrlichii MLHE-1] Length = 617 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 170/634 (26%), Positives = 271/634 (42%), Gaps = 46/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI +LL I+ ++G V + N + CPFH EKTPSF +K F Sbjct: 4 RIPDEFIDELLHRTDITEVVGARVRLKKTGANLL-----GLCPFHSEKTPSFTVAPAKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G + FL F E+V+ LA AG+ LP L ++ Sbjct: 59 YHCFGCGAHGTAIRFLMDYERMDFREAVEYLARQAGMELPAAAAAAPVP-DRHARLYHVL 117 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ +L ++ + YL RG+ F LG+AP +L + R + Sbjct: 118 AEAAIYYQEALRRHPASAKAVDYLKRRGLSGDIAARFALGFAPPGWDNLLKRHRDRQA-- 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGLLI+ D YDRFR+R++FPIR+ RG V+ FGGR L KYLNSPET Sbjct: 176 -DLVEAGLLIERDGG-RVYDRFRDRVMFPIRNRRGTVVGFGGRVL-GDGEPKYLNSPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+ LY + A+ + +++VEGYMDV++L Q GVQ V++LGT Sbjct: 233 VFHKGRELYGLYEAVQAQRNPPL----------LLVVEGYMDVVALAQHGVQGAVATLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T Q+ L++ + R+V CFDGD G +AA++A++ L + G V +LL GEDPD Sbjct: 283 AVTPDQVSRLFRATDRVVFCFDGDRAGRQAAWRAVENSLPAMREGRSVEILLLPEGEDPD 342 Query: 361 SFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 S +R G AF +L E+ PL + + + + D+RA L + + Sbjct: 343 SLVRAEGAEAFLRRLERETRPLAEYSLEELADGLRLDAVDDRARLVQKAVPLVRRLPVGI 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R +Y + + + + G + A R + + Sbjct: 403 YRDFYVEKLAELAHTGVGRIEQAVEQGGEGARPTAPERPPAARRPAGGGRGAAMVRRTPV 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L L+ PA++ L + D L L + + + Q Sbjct: 463 -----RQALTLLLQRPALVA-HAGPLDQLHGDLPGLDLLRQ-ILEIARDHPDVNTAGLLQ 515 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R L +L E D+ + L ++ SRQ E+ Sbjct: 516 RFQGHPQEAALWRLATW-----------ELPGGDLEGEFTDCLERIRQACS-SRQTSELR 563 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ + + + + + L + ++ + Sbjct: 564 AELDE---ERDFDAAKDKLRTLMQ-RRRLQYLRE 593 >gi|153816194|ref|ZP_01968862.1| hypothetical protein RUMTOR_02442 [Ruminococcus torques ATCC 27756] gi|317500514|ref|ZP_07958737.1| DNA primase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089387|ref|ZP_08338286.1| hypothetical protein HMPREF1025_01869 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846529|gb|EDK23447.1| hypothetical protein RUMTOR_02442 [Ruminococcus torques ATCC 27756] gi|316898103|gb|EFV20151.1| DNA primase [Lachnospiraceae bacterium 8_1_57FAA] gi|330404755|gb|EGG84293.1| hypothetical protein HMPREF1025_01869 [Lachnospiraceae bacterium 3_1_46FAA] Length = 591 Score = 376 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 156/641 (24%), Positives = 266/641 (41%), Gaps = 52/641 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYPDELIEEVRTRNDIVDVISDYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+V+ LA AG+ LP + +++ ++ ++ Sbjct: 56 MYYCFGCGAGGNVFTFLMEYENFSFMEAVKFLADRAGIALPEAEYSKEAKQRADLKASIL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +++ LK+ R H YL +RG+ I F LGY+ L ++LR KG+ Sbjct: 116 EINKIAARYYYVQLKSERGVGAHTYLTDRGLTEETITAFGLGYSTKYSDDLYQYLRGKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ I +AGL I+ D YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 176 SEDLIRQAGL-INTDERQGVYDKFWNRVIFPIMDVNSRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + ++ +L EGYMDV+SL QAG N V+SL Sbjct: 234 TAVFDKSRNLYGLNRAR------------TSRKTYFLLCEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D DD G RAA +A+ + G + + +D Sbjct: 282 GTALTSGHASLIKRYVQEVYLTYDSDDAGTRAALRAVPI---LKEAGISAKVIRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G FE I + + +P+ + N + +D+ Sbjct: 339 PDEFIKNLGAQEFENRIQNARNGFMFSLEILEREFDMASPEGKTAFFREAANRLLSFEDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + + K A P R ++ + Sbjct: 399 LERNNYIEAVASAYKVSKESLEKLVA-------KTAVSTGLARPVTRPKKADGAVLQKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL +I + + + ++ + +++ L+ E+ P ++ Sbjct: 452 GIVTSQKVLLTWMIENENLYSKISSYISPDDFTGELNRRVAKLLYEQ-HEKGELNPAKLL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + Q + + L + ++ + Sbjct: 511 NHFTSEEEHREAASLFHTKIRQL-------KTKEEQDQALKDTI-LKVKAHSINER---- 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + L E ++ ++ I+ Sbjct: 559 --------TLNLDPSDMAGLQHLMEEKRKLEELRQLHISID 591 >gi|284030450|ref|YP_003380381.1| DNA primase [Kribbella flavida DSM 17836] gi|283809743|gb|ADB31582.1| DNA primase [Kribbella flavida DSM 17836] Length = 634 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 150/650 (23%), Positives = 259/650 (39%), Gaps = 42/650 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G YV G CPFHDEK+PSF+ ++GF Sbjct: 4 RIKEEDIALVRERARIDEVVGSYVTLKNAG----GGSLKGLCPFHDEKSPSFNVTPARGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---EKKEKIQTDLI 118 +YCF C GD + F+ + SF E+V+ LAA G+ L + + + + L+ Sbjct: 60 FYCFGCQEGGDVIDFIQKIDQISFHEAVETLAAKTGIQLRYDESGAPMPKSQSNQRPRLV 119 Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 VA +F+ L +LD+RG D A F +G++P L HLR +G Sbjct: 120 EAHRVAAEFYSELLFGAPEATLGRQFLDKRGFDRDAAAHFGVGFSPRGGDQLVTHLRGRG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 FS +++ +GL+ GDN YDRFR RL++PIR + VI FG R L + + KYLN Sbjct: 180 FSNAEMVASGLV--GDNQRGLYDRFRGRLMWPIRDAASDVIGFGARRLFDDDKIEAKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET+++ K K LY A + K ++VEGY DV++ AGVQ V Sbjct: 238 TPETVIYKKSKVLYGVDLARREIAK----------GKQAVVVEGYTDVMACHLAGVQTAV 287 Query: 296 SSLGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GT+ E R+L + ++ FDGD+ G RAA KA + ++ Sbjct: 288 ATCGTSFGEDHARVLRQLLLDHDQFRGEVIFTFDGDEAGQRAAVKAFEGDQAFA---SQT 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP G A +LI +PL + + D R + Sbjct: 345 YVAVEPDGLDPCDLRLQKGDAAVRELIGRRVPLYRFVLTNRLAKYDLDRADTRIDALRDA 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I+D+ +++ + L + E +GP + Sbjct: 405 ATLVVSIRDRSKVDAFTRELAGLLGMEVDQVRNEVHRAASRPAPTKSAPADRGPVVVQTE 464 Query: 469 SSLVKGKLSKKPS----LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + P L E +L + +PA++ + EL D + + L + S + Sbjct: 465 APPPPKVNLPSPRDPRFLMEWDVLKLAMQYPALVGVAFDELDDHDFTHPWLAAVRSAMAK 524 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + E + + + + + L + + + +A Sbjct: 525 VGGPAQAAPGEAWVVAVRDAMGNDPAAAVVSALAVEPLRIGR------EPDERFARAHLA 578 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + R+ +++ ++ + +A+ + L + ++ Q Sbjct: 579 RLQELTCLRRIADLKSKLQRTNPIDKADDYNRMFGELIALEQYRTELREQ 628 >gi|206576100|ref|YP_002236519.1| DNA primase [Klebsiella pneumoniae 342] gi|288933504|ref|YP_003437563.1| DNA primase [Klebsiella variicola At-22] gi|290511437|ref|ZP_06550806.1| DNA primase [Klebsiella sp. 1_1_55] gi|206565158|gb|ACI06934.1| DNA primase [Klebsiella pneumoniae 342] gi|288888233|gb|ADC56551.1| DNA primase [Klebsiella variicola At-22] gi|289776430|gb|EFD84429.1| DNA primase [Klebsiella sp. 1_1_55] Length = 581 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 179/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL +RG+ S I F +GYAP ++ + + Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQSENGAPRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+S L + Q ++ + Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L++L +W + +I + + +L + LL ++EE+ Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSLLELRQEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA+ G +E+ L +I E+ + Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581 >gi|209696104|ref|YP_002264034.1| DNA primase [Aliivibrio salmonicida LFI1238] gi|208010057|emb|CAQ80380.1| DNA primase [Aliivibrio salmonicida LFI1238] Length = 586 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 168/631 (26%), Positives = 289/631 (45%), Gaps = 56/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI +LL I ++I V ++ N Y ACCPFH+EK+PSF + K FY Sbjct: 5 IPRSFIDELLNRHDIVDIIDTRVKLKKQGKN-----YGACCPFHNEKSPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-------EKKEKIQT 115 +CF C V G+ + FL F+E+++ LA++ G+ +P + + Sbjct: 60 HCFGCGVHGNAIDFLMEFDRLEFVEAIEELASMLGLDVPREQRSGFSAPSGPTANSEQKR 119 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L L+ + F+ LK+A + YL ERG+ S + F +GY D ++ + + Sbjct: 120 SLYDLMGGISQFYRSQLKSANNIVAINYLKERGLSSEIAQKFGVGYIADEWELVKNNFGR 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 S++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR + +G + KYLN Sbjct: 180 DKASQDALVSGGMLIENDKGRR-YDRFRGRVMFPIRDRRGRVIGFGGRVIGEG-TPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKGK LY + AL ++VEGYMDV++L Q GV V Sbjct: 238 SPETPIFHKGKELYGLYEALQA----------YKDLPQALVVEGYMDVVALAQFGVDYAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGTA T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 288 ASLGTATTGDHMQLLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLNDGRQLKFMFLPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD++IR YGK AFE+ I +S L++ +++ + ++ + +A+L I+ + Sbjct: 348 GEDPDTYIRQYGKEAFEREIAQSESLINFMFRSLIDQVDTSSREGKAKLTTLAVPLIDKV 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR Y + + L + + + + + + Sbjct: 408 PGGTLRLYLREQLGKTLGIMDESQLQQLI-------------------SKQGAPETKRQV 448 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ L+ +P + Q + L L+ L + + Sbjct: 449 QPDIKRTAMREVITLLLQNPNLAQLVPDLSSVQDIPLPGL-SLFLQLLENCRHNPHITTG 507 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + +LL +L + + + Q + +Q Sbjct: 508 QLLEYWRGDKNEKLLSRLAAWELHID-QDNIQDVFMDSLDNILAQCIN---------QQI 557 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E ++ + + T E+ L++++ E+ Sbjct: 558 ESLQTK--ERTLGLSVEEKRELLALMLELKA 586 >gi|313903913|ref|ZP_07837293.1| DNA primase [Eubacterium cellulosolvens 6] gi|313471062|gb|EFR66384.1| DNA primase [Eubacterium cellulosolvens 6] Length = 594 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 160/628 (25%), Positives = 270/628 (42%), Gaps = 49/628 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I QYV RR N Y+ CPFH+EKT SF + K Sbjct: 1 MRYTDEIIEEVREKNDIVDVISQYVKLTRRGNN-----YFGLCPFHNEKTGSFSVSPVKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 +YCF C G+ +FL +F E+++ LA AGV LP + ++ L+ Sbjct: 56 MFYCFGCGKGGNVYTFLMEYENYTFQEAIKVLAERAGVKLPEIEYTKEQMDAADKKSRLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +VA +F+ L++ + YL RG+ ++ F LGYA R L +L++KG+ Sbjct: 116 EVNKVAAGYFYMKLRSPAGQHGLAYLKGRGLSDETMKNFGLGYADKYRNDLYNYLKKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++ + ++GL D D+F NR+++PI + +VI FGGR + +GE KYLNSPE Sbjct: 176 ADDLLKDSGLF-HFDERRGFSDKFWNRVMYPIMDASSRVIGFGGRVMGEGEP-KYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K +NLY A +K I+ EGYMDV+S+ QAG N V+SL Sbjct: 234 TEIFNKSRNLYGLHVARRTRRK------------NFIICEGYMDVISMHQAGYTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q L+ + + ++++ +D D G++AA +AI + G V L +D Sbjct: 282 GTALTSQQCSLMSRFTKQVLVIYDMDGAGVKAALRAIPM---LRQAGLSTKVVDLKPHKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F++ G AFE+ + + + + + P++++ I I+D+ Sbjct: 339 PDEFLKAEGAEAFEERLERAENSFMFVIRMLEAEHDMSDPEDKSRFFHECAAKIVEIEDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A+ R ++ + R K R + K Sbjct: 399 IERKSYIDAVAARYNIDVDLLNSQVNKEALKGIGRTEIRVPKPAPGRAQAKTGNADKE-- 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L + P ++ + + + N +K+ ++ K P I Sbjct: 457 -----QKLMLTWLTDWPHLIGRISEYFSPEDFTNPMYRKVAEMVWEQASAGK-VSPASII 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E + L + D R+ + L KR + SR Sbjct: 511 STFTESEEQTEVASLFNTNIAVD--------SDDDRRKAFFDVLCRMKRQSIDSR----- 557 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626 A G+ +++ + Sbjct: 558 ----ADSLDPGDMGGFMKIMNERKRLEK 581 >gi|27262500|gb|AAN87531.1| DNA primase [Heliobacillus mobilis] Length = 643 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 165/666 (24%), Positives = 279/666 (41%), Gaps = 55/666 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++++ I I ++ YV R+ G Y CPFH EKTPSF + K Sbjct: 1 MK-DPQIVEEIRYRIDIVEIVADYVSLKRQG-----GRYTGLCPFHSEKTPSFTVSREKQ 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 +++CF C GD +F+ +F E++++LA AGV LP P + Sbjct: 55 YFHCFGCGTGGDVFTFVMLRENLTFPEALKKLAERAGVTLPEQKLTPTQQALRTAVEQGR 114 Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + F L+ R ++ YL RG+ F LGY+P L E L ++G Sbjct: 115 ALHRRAAELFFRCLREDTRARQAREYLSRRGLSDTVTVAFGLGYSPPGWDFLTERLVREG 174 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++ E++ + GL++ + YDRFRNR++FPI ++G+ +AFGGR L E KYLNSP Sbjct: 175 YAPEELEQFGLIVPRQGADGYYDRFRNRIMFPIFDAQGRPVAFGGRVL-DDEIPKYLNSP 233 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ KG++LY A ++ ILVEGYMDV++ Q + V+S Sbjct: 234 ETPLYKKGQHLYGLHKAGPAIR----------EKGIAILVEGYMDVIACHQHDIPQAVAS 283 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA+T Q RLL + +PR+++C+D D G+ A KA +++ G ++ + L G+ Sbjct: 284 LGTAMTPEQGRLLLRYAPRVLICYDADRAGIEATVKAGEILTRL---GAQIQVLTLPDGK 340 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD F++ +G ++F ++ + + R T + L + I Sbjct: 341 DPDEFLQKHGASSFWQMADNAPAFFSFCYSRVASQYDLTTVAGKVAAVRELAPQLLIIPS 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--------------- 462 + Q + ++ + E G R K R ++ P Sbjct: 401 AIEQEANIQWLAREIRLSEAAIMEELRGLSRNTKSYLRGDRKENPRNTNYTSAQKNETES 460 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSF 521 S + L + L+ ++ P ++ ++ L + LQ++ Sbjct: 461 SASTVVKGLPDRTNGDRQEQAWRYLIYWMVGTPERVRWVFERLGNEIPQVQGPLQEILEA 520 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + E + L + + L L E +++ + Sbjct: 521 LVAVSREGQGVLVGRVAEGLVAEETKAYFSAL------------LVEDLEGALQESVLED 568 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R+ L + +E Q+ ++ G+ E L+ L + Q S+ A G Sbjct: 569 CVNTLRYGWLVEEIARLEIQVEALSRSGDMEALQRLLPQLSNLQ----QARSRAARRFGA 624 Query: 642 GKMSGR 647 + GR Sbjct: 625 MPLGGR 630 >gi|329298674|ref|ZP_08256010.1| DNA primase [Plautia stali symbiont] Length = 581 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 180/624 (28%), Positives = 285/624 (45%), Gaps = 57/624 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF + K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVSGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 YYCF C KG+ + FL F+ESV+ LA G+ +P + + L + Sbjct: 59 YYCFGCGAKGNAIDFLMNHDRLDFVESVEELATQHGLEVPYEAGNGPSPMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ SL+N + K YL RG+ I+ F +GYAP ++ + Q+ Sbjct: 119 LLEGLDSFYQQSLRNPQAKSAQQYLATRGLSQQVIDHFAIGYAPAGWDNVLKRFGQQKED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++E G+L+ D+ +YDRFR+R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEVGMLVSNDSG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 PIFHKGRQLYGLYEAQKNHPQPAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +T D R +L I+ I + Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSTFLFDSLMPQVDLSTRDGRTKLATLALPLISQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + P +R Sbjct: 407 LRIYLRQTLGNKLGILDDNQLDKL----MPKQAESNTAPVAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P L + L+ L E ++ Sbjct: 452 -----RVLIALLVQNPQFAAIVPVLDGLEQSKLAGLP---LFVELVRRCTENPSLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + F + L+ L + + +Q +LA L ++ E Sbjct: 504 LELYRGTEFSQPLETLATWNHMIV---------DDEAEEVFQDSLASIYDA-ALEQRLEA 553 Query: 598 IEKQIAQVTAKGEAEKTAILISIL 621 + IA+ +G + L Sbjct: 554 L---IARDRTEGLSAAERREFWAL 574 >gi|269103528|ref|ZP_06156225.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163426|gb|EEZ41922.1| DNA primase [Photobacterium damselae subsp. damselae CIP 102761] Length = 584 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 167/633 (26%), Positives = 283/633 (44%), Gaps = 66/633 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DL+ I ++I V ++ N + ACCPFH+EKTPSF + K F Sbjct: 4 RIPRSFIDDLISRYDIVDVIDSRVKLKKKGKN-----FGACCPFHNEKTPSFSVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C G+ L F+ F+E+++ LA+ G+ +P + + + +L Sbjct: 59 YHCFGCGAHGNVLDFVMEFDRLEFVEAIEELASQLGIEVPRENDNGSAPSGPRSAEKRNL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ F+ L+ + YL RG+ ++ F +GY PD +R + Sbjct: 119 YDVMAHIAQFYQSQLRTDEGQLAIDYLKGRGLSGEIVKKFAIGYVPDQWDLVRNRYGRDE 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S++ +++ G+LI+ DN YDRFR R++FPI RG+VI FGGR L + KYLNSP Sbjct: 179 ASQQALVDMGMLIENDNGRR-YDRFRGRVMFPILDRRGRVIGFGGRVL-GDGTPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY L ++ R I++VEGYMDV++L Q GV V+S Sbjct: 237 ETPIFHKGRELYGLHQVLETHREPER----------ILVVEGYMDVVALAQFGVDYAVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGT+ T ++ L++ + +V C+DGD G AA++A++ L +L+ G + F+ L GE Sbjct: 287 LGTSTTSEHIQTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPYLLDGRELKFMFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD++IR YGK FE + ++ L+D ++ TE + T + R++L K I + Sbjct: 347 DPDTYIRQYGKEEFEHQVSSAMSLIDFMFNSLTEQANMETKEGRSKLMTLAKPLIEKVAG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR Y + L + E + + + ++ P Sbjct: 407 EALREYLINKLGYSLGLPPDQIRLESKRPQQEKPRLVQQNLKRTPM-------------- 452 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-------KLWSFLFSDFVEQK 530 ++ LI +P + + + +D + L + Sbjct: 453 -------RDVVALLIQNPIFVNQ-------LEFDTQAFEGIEVAGLNLLLTIVEKCRTNP 498 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 ++ + LL +L W + + A+ + Sbjct: 499 NITTGQLLESWRGSKNEALLARLAS-------WELPLSKDEDSTLDVFLDAMD-NVIGQC 550 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +Q E+++ + T E+ L S+L + Sbjct: 551 VQQQIEKLQAK--SSTVGLSVEEKQELQSLLLD 581 >gi|196248950|ref|ZP_03147650.1| DNA primase [Geobacillus sp. G11MC16] gi|196211826|gb|EDY06585.1| DNA primase [Geobacillus sp. G11MC16] Length = 599 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 159/632 (25%), Positives = 271/632 (42%), Gaps = 44/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++I +YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRSVDIVDVISEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AG+ L + K + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYQLNVRGHDDGKAGEAKVM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + F+HH L + YL RG I F++GYAPD+ + + L Sbjct: 119 IEAHTLLKRFYHHLLVYTKEGQAALDYLQARGWTKETINRFEIGYAPDAPDAAAKLLDSH 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 FS + +AGL+ DRFRNR++FPI RG+ + F GR L +G+ KY+NS Sbjct: 179 SFSLPMLEKAGLVTKK-EDGRYVDRFRNRIMFPILDHRGETVGFSGRLLGEGQP-KYVNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY+F A ++K +L EG+ DV+S QAG+ V+ Sbjct: 237 PETPIFRKGMLLYHFHEARVPIRK----------RQEALLFEGFADVISAVQAGIDYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L + + + +C+DGD+ G+ AA++A + G RV + G Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDNAGMEAAWRAAE---QLSALGCRVKVASIPNG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR YGK F I + PL+ ++ +R + I + Sbjct: 344 LDPDEYIRVYGKERFVGEIAAAQPLMAFKMNHLRRGKNLQHEGDRLRYIEEVLREIGKLP 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + D + S Y + K + S+ + KL Sbjct: 404 SPVEKDYYVRQLADEFSLSLSALNEQLSRYKQETSKPRETSANEKASRPT-----LTKKL 458 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + + + R++ E + L +++++ + E Sbjct: 459 LPAFHNAERLLLAHMMRSRDVALFVQERVGG-RFNIEEHRALAAYIYAFYEEGHEADVGA 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL + + L T + + ++ + L K + Sbjct: 518 LMIRLPDEL--------QSLASELSLLLVTDDVSEQELADYIKHVLNHPKWL-----MLK 564 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E E++ + + + A + + E+ + Sbjct: 565 EKEQEKIEAERRKDFLTAARIAKEMIEMKKML 596 >gi|138896057|ref|YP_001126510.1| DNA primase [Geobacillus thermodenitrificans NG80-2] gi|134267570|gb|ABO67765.1| DNA primase DnaG [Geobacillus thermodenitrificans NG80-2] Length = 599 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 159/632 (25%), Positives = 272/632 (43%), Gaps = 44/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++I +YV ++ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRSVDIVDVISEYVQLKKQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AG+ L + K + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGIDLSAYQLNVRGHDDGKAGEAKVM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + F+HH L + YL RG I+ F++GYAPD+ + + L Sbjct: 119 IEAHTLLKRFYHHLLVYTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLDSH 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 FS + +AGL+ DRFRNR++FPI RG+ + F GR L +G+ KY+NS Sbjct: 179 SFSLPMLEKAGLVTKK-EDGRYVDRFRNRIMFPILDHRGETVGFSGRLLGEGQP-KYVNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY+F A ++K +L EG+ DV+S QAG+ V+ Sbjct: 237 PETPIFRKGMLLYHFHEARVPIRK----------RQEALLFEGFADVISAVQAGIDYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L + + + +C+DGD+ G+ AA++A + G RV + G Sbjct: 287 TMGTSLTEEQARILRRHAETVTICYDGDNAGMEAAWRAAE---QLSALGCRVKVASIPNG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR YGK F I + PL+ ++ +R + I + Sbjct: 344 LDPDEYIRVYGKDRFVGEIAAAQPLMAFKMNHLRRGKNLQHEGDRLRYIEEVLREIGKLP 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + D + S Y + K + S+ + KL Sbjct: 404 SPVEKDYYVRQLADEFSLSLSALNEQLSRYKQETSKPRETSANEKTSRPT-----LTKKL 458 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + + + R++ E + L +++++ + E Sbjct: 459 LPAFHNAERLLLAHMMRSRDVALFVQERVGG-RFNIEEHRALAAYIYAFYEEGHEADVGA 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL + + L T + + ++ + L K + Sbjct: 518 LMIRLPDEL--------QSLASELSLLLVTDDVSEQELADYIKHVLNHPKWL-----MLK 564 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E E++ + + + A + + E+ + Sbjct: 565 EKEQEKIEAERRKDFLTAARIAKEMIEMKKML 596 >gi|315504273|ref|YP_004083160.1| DNA primase [Micromonospora sp. L5] gi|315410892|gb|ADU09009.1| DNA primase [Micromonospora sp. L5] Length = 631 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 147/648 (22%), Positives = 251/648 (38%), Gaps = 44/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+++I + V G+ CPFHDEK+PSF+ + ++ Sbjct: 12 RIRDEDIALVRERTAIADVISEVVTLKSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 +YCF C V GD + FL SF+ESV+RLAA AG+ L P+ ++ + Sbjct: 68 FYCFGCGVGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVEDDRSTPRTRPQQGQRQR 127 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ A +F+ L A + +L RG D A E + G+APD L +HLRQ+ Sbjct: 128 LVAAHAAAVEFYRAQLTTAGARPAREFLAGRGFDRAAAERYGCGFAPDGWDLLTKHLRQQ 187 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GF+ ++++ GL + + DRFR RL++PIR G VI FG R L + KYLN Sbjct: 188 GFTHDELVTGGLSRPARSG-SLIDRFRRRLMWPIRDITGDVIGFGARKLFDDDDGPKYLN 246 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET ++ K LY A + K + +++VEGY DV++ A V V Sbjct: 247 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLADVPTAV 296 Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA + +L + + I+ FDGD G +AA +A + + R Sbjct: 297 ATCGTAFGGDHISVLRRVLFDSDERAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---RT 353 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + DP G A L+ PLVD + +T D R E Sbjct: 354 FIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRRA 413 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + IKD++ R Y + + L + P Q Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLTAANGQPAPGTPAAPARPRQG--- 470 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + S+ E L + P + + + Y + + + + + Sbjct: 471 ----APSVDSPRSMVEREALKLALQEPVLAGPMFDAVEATDYQHPVHVAVRAAVAAAGGA 526 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 +R+ + + L + + + + Y ++ Sbjct: 527 SGATGGAVWIERVRDACDDLAGQAL---IGELAVEPLRIDGEPDP---RYVSITMARLQW 580 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ + +++ +I +V ++ L L + + Q A Sbjct: 581 SSVTGRIRDLKSKIQRVNPVSNKDEYFALFGELLSLEQHARALREQAA 628 >gi|156932575|ref|YP_001436490.1| DNA primase [Cronobacter sakazakii ATCC BAA-894] gi|156530829|gb|ABU75655.1| hypothetical protein ESA_00357 [Cronobacter sakazakii ATCC BAA-894] Length = 581 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 173/628 (27%), Positives = 288/628 (45%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPTQIERHQRQTLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ +L+ + YL +RG+ IE F +GYAP ++ + + Sbjct: 119 LLDGLNGFYRQALQAQSAEPARQYLAKRGLSESVIERFAIGYAPPGWDNVLKRFGNNSEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RKSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + + +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEVQQS----------DPNPPRLLVVEGYMDVVALSQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +++L++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TATTAEHIQMLFRVTNNVICCYDGDRAGRSAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I+ + + Sbjct: 347 DTLVRQEGKAAFEARMEQAQPLSTFLFNNLLPQVDLSTPDGRAQLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + K + Sbjct: 407 LRIYLRQELGNKLGILDDSQLERLMTRQADNSQTRPAPALKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + LA + +L++ L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPELAPLVP-SLAALDKTKLPGLELFAELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L W + +I + + AL + +L + E+ Sbjct: 506 HYRGTKEAATLEKLST-------WDDIADKDI--AEKTFTDALD-HMFDSVLELRLTEL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 IA+ +G + + I+ E + Sbjct: 555 --IARSRTQGLSAAEREEVRIITEARAR 580 >gi|163738641|ref|ZP_02146055.1| DNA primase [Phaeobacter gallaeciensis BS107] gi|161387969|gb|EDQ12324.1| DNA primase [Phaeobacter gallaeciensis BS107] Length = 749 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 179/448 (39%), Positives = 271/448 (60%), Gaps = 10/448 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WD+RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ F+E+VQ LA AG+ +P DP+ ++K+ + L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVGFMEAVQILAQEAGMEMPARDPRAQQKQDHRAQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L + YL RG+ A+E +++G+AP+ +L + LR KG E Sbjct: 121 MEQAVRFFRLQLNTRAGEGARSYLARRGLSGPALERWEIGFAPEGWQNLWDALRGKGVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ELIMGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A KS +++ EGYMDV++L + G + V+ LGT Sbjct: 241 LFDKGRSLYNHGPARTASGKS----------GQLLVAEGYMDVIALAEGGFEASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW+++ ++ DGD GLRAA + IDL L L G + F L+ G+DPD Sbjct: 291 AITENQLQMLWRIADEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G+ A + ++ +++P+V +LW+RETE + F++P+ +A L+ L++ I I+D + Sbjct: 351 DLIRGEGREAVQAVLDQAMPMVRLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR 448 R +Y + ++D +LF+ G Sbjct: 411 RRHYGEDLQDLRWELFRGGRPREEAAGS 438 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 66/208 (31%), Gaps = 19/208 (9%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 P + S L G +REA +L T+I PA++ + L + + Sbjct: 543 RGKNAPPQPLETTRNSLLAGGSEESLARVREAVILATVITTPAVVAKYEVNLERMACIGS 602 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 + L + ++ L EEI L + E + Sbjct: 603 DHALLRDLVLRHGIDAPERLKEEIAAAAGAHALENLFALRHVAISPCLRRPGDVEVASLT 662 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQVTAKGEAEKTAILISI 620 + + + + A R L + E E+ + A+ +A ++ Sbjct: 663 LAEEFAKLEAS----RGLDAELAEAEEDLDGLADEAVTWRLGQAAEARNKAVRSENEDRA 718 Query: 621 LHEVHIQIHQIESQEAMIEGFGKMSGRL 648 ++V ++ +E + FG + R+ Sbjct: 719 QYDVGENGARLNREER--DAFGALLERI 744 >gi|295695447|ref|YP_003588685.1| DNA primase [Bacillus tusciae DSM 2912] gi|295411049|gb|ADG05541.1| DNA primase [Bacillus tusciae DSM 2912] Length = 622 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 173/636 (27%), Positives = 284/636 (44%), Gaps = 36/636 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I + + I ++IG+YV R Y CPFH E+TPSF + K Sbjct: 4 RIPEDLIDRVRQSVDIIDVIGEYVHLRRVGR-----SYVGLCPFHSERTPSFTVSREKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 Y+CF C G + FL A+ G +F E+V++LAA +G+P+P D + + + D +R Sbjct: 59 YHCFGCQAGGTVIHFLMAIDGIAFQEAVRKLAARSGIPVPDVQEDEEESGYAEKRRDALR 118 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+A ++ H L N + YL++R I + F+LG AP SR SL L ++G Sbjct: 119 AYELAAKWYQHLLLNTVYGRPGRTYLEKRHISTTTAHDFQLGLAPASRDSLMAFLERRGL 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++E GL YDRFRNRL+FPI +G+V+AFGGR L +GE KYLNSPE Sbjct: 179 DPVLLMEIGLG--ATGEHGRYDRFRNRLMFPIWDGQGRVVAFGGRVLGRGEP-KYLNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHKG++LY + A + L+K+ R L+EGYMDV+++ QAG V+SL Sbjct: 236 TPLFHKGRHLYPWHKARSALRKTRRA----------FLLEGYMDVVAMHQAGFTAAVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q +L +++ +DGDD G RAA +A L G V L G D Sbjct: 286 GTALTEEQASMLKHNVDEVIVVYDGDDAGRRAAVRAGLL---LQRVGVTAKAVRLPPGMD 342 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +R G A ++ L E++ L + R+ + ++R N + + Sbjct: 343 PDDLLREKGPEAMKRVLEQETMSLTAFRLADLRDRRALSNVEDRVSFLQEALNVLADEES 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Q++ + + R + R + + + ++ + Sbjct: 403 AVEAETHLQSLASEFHISLEALRHDL-DEARQRQTLTRDKHGNKWNTNIDPTTGPQMNHY 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E +L +++ P ++ + +AD + L + L+ + + P Sbjct: 462 PPHVAAERQMLTSMLLDPGAARQVEEVVAD-EFCVESHAVLAAHLYRYYGDGGTADPTAF 520 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + ++ L + ++ D ++ A R+ RQ E Sbjct: 521 LETVDDPAVRSVVTSLIMEHERRRDQG-RAGWSLEDCFATWRMA-----RYEDALRQVRE 574 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + G E+ L + + +I +++ Sbjct: 575 ---SFDEAARAGRFEEMYRLQEQMKSLREEIDALKN 607 >gi|238896570|ref|YP_002921313.1| DNA primase [Klebsiella pneumoniae NTUH-K2044] gi|330003819|ref|ZP_08304769.1| DNA primase [Klebsiella sp. MS 92-3] gi|238548895|dbj|BAH65246.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328536803|gb|EGF63115.1| DNA primase [Klebsiella sp. MS 92-3] Length = 581 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL +RG+ S I F +GYAP ++ + + Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+S L + Q ++ + Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L++L +W + +I Q + +L + LL ++EE+ Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA+ G +E+ L +I E+ + Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581 >gi|125973413|ref|YP_001037323.1| DNA primase [Clostridium thermocellum ATCC 27405] gi|281417616|ref|ZP_06248636.1| DNA primase [Clostridium thermocellum JW20] gi|125713638|gb|ABN52130.1| DNA primase [Clostridium thermocellum ATCC 27405] gi|281409018|gb|EFB39276.1| DNA primase [Clostridium thermocellum JW20] gi|316940352|gb|ADU74386.1| DNA primase [Clostridium thermocellum DSM 1313] Length = 600 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 181/613 (29%), Positives = 291/613 (47%), Gaps = 39/613 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 YP + I+++ + I +++G+YV +R+ N Y+ CPFH EKTPSF + +K Y Sbjct: 5 YPEELIEEIRMSNDILSVVGEYVKLERKGKN-----YFGLCPFHSEKTPSFSVDPNKQLY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 YCF C G + F+ + +IE+V+ LA A + LP D + E+ + + +L+R+ Sbjct: 60 YCFGCGKGGSVIQFVMEVENLDYIEAVKMLAERARIQLPEGDNEEERIIARKKQELLRIN 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF+ L + ++ YL +R + F LGY+P+ +L HLR+KG+ +E Sbjct: 120 VEAARFFYEQLNDKKNLAPREYLTKRKVSGSIARKFGLGYSPEEWDALYNHLRKKGYDDE 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++++GL I + YDRFR R+IFPI RG VI FGGR L + KY+NSPET++ Sbjct: 180 ILLDSGL-ILKGKNGGYYDRFRGRIIFPIFDLRGNVIGFGGRVL-DNSTPKYMNSPETLV 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 ++K KNLY A N QK II+VEGYMDV+SL Q G+ N V+SLGTA Sbjct: 238 YNKRKNLYGLNFAKNSGQK------------RIIVVEGYMDVISLFQFGIINTVASLGTA 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE Q R+L K + I++ +D D G+ A + +DL G V +++ G+DPD Sbjct: 286 LTESQGRILKKYAEEIIISYDADTAGMAATMRGLDL---LNDIGCNVKVLIIPEGKDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ G AF KL+ +L LV+ K NT + + + ++ I + R Sbjct: 343 FVKKNGPEAFNKLVENALSLVEYKIKALKSTIDTNTTEGKINFLNKAADLLSKIDNNMER 402 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Y + I + E + +K R K + RL K Sbjct: 403 EMYIKKISKEYDISQESIYAEILKRIKPKTVYKPLTRTLTAKNDNNRLKIEKNGKKSSYD 462 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E LL L ++ + ++ + + + +++ +F F E+K +P E+ Sbjct: 463 KIIECERMLLCLLSIDNSLYKVVKDKIIVDEFKDEQNKEIAKIVFKRFEEKKGIVPAELI 522 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + +L + E N D + + L +++EI Sbjct: 523 N-LAGEETSGVFARLIQ-----------GECNFDDNIKAVMDIIK-KMELYRLEDRQKEI 569 Query: 599 EKQIAQVTAKGEA 611 +Q++ E Sbjct: 570 LQQLSSGNLSTED 582 >gi|188532570|ref|YP_001906367.1| DNA primase [Erwinia tasmaniensis Et1/99] gi|188027612|emb|CAO95462.1| DNA primase [Erwinia tasmaniensis Et1/99] Length = 581 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 281/628 (44%), Gaps = 52/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEIPYESGSGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + + YL +RG+ I+ F +G+AP + + Sbjct: 119 LMTGLRDFYQQSLDHGQSAGARDYLAQRGLSDEVIKHFSIGFAPAGWDNALKRFGSNPDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL + R +++VEGYMDV++L Q GV V+SLG Sbjct: 237 DIFHKGRQLYGLYEALKNHPEPAR----------LLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFEK + +++PL L+ +TPD RA+L + + + Sbjct: 347 DTLVRKEGKDAFEKRMEQAMPLSTFLYDTLLPQVDLSTPDGRAQLATLALPLLRQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + D+L + + K A K + Sbjct: 407 LRIYLRQVLGDKLGIPDHIQLEKLLPEKAESAKAAAQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + + L+ L S ++ + Sbjct: 452 -----RILIGLLVQNPQLAAMVPSLDGLAQSETPGF-SLFVELVSTCAAHPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + D + Q L R+ EE+ Sbjct: 506 LYRGTKFSQSLETLATW----------NHMIVDDEVETMFQDALASMYDNALERRLEELI 555 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 + T AE+ ++ + Q Sbjct: 556 AR--DRTHVLSAEERREFWTLSQALKKQ 581 >gi|320332069|gb|EFW88005.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4] Length = 651 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 179/668 (26%), Positives = 293/668 (43%), Gaps = 76/668 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKT SF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTSSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT------------------------------------E 442 LR Q + + + + Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQ 468 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQ 499 + + + + + + + + P+ E A L TL++HP + + Sbjct: 469 QEWTPKKTGGQNQKKWDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAE 528 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + ++ +L L + ++ R G LL+ L + Sbjct: 529 KV-ENASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-- 585 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 W + +L+ +R R L + + E +A Sbjct: 586 ---WLIEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKI 631 Query: 620 ILHEVHIQ 627 L E+ + Sbjct: 632 QLRELLNR 639 >gi|266623972|ref|ZP_06116907.1| DNA primase [Clostridium hathewayi DSM 13479] gi|288864211|gb|EFC96509.1| DNA primase [Clostridium hathewayi DSM 13479] Length = 587 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 151/612 (24%), Positives = 273/612 (44%), Gaps = 33/612 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + ++++ + I ++I YV ++ +N Y+ CPFH+EK+PSF + SK Sbjct: 1 MRYPEEVVEEVRMKNDIVDVISGYVKLQKKGSN-----YFGLCPFHNEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ ++F+ SF+E++Q LA AGV LP + ++ ++T L+ Sbjct: 56 MYYCFGCGAGGNVITFVMEYENYSFMEALQMLADRAGVALPKQEYSKEAKEAADLRTALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A +++++ L N + + + YL +R + I F LG+A + L +LR KG+ Sbjct: 116 EINRMAANYYYYQLTNPQGEAGYRYLRDRQLSDDTIRHFGLGFANKTSDDLYRYLRAKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + E GL+ ++D+F NR++FPI +VI FGGR + GE KYLNSPE Sbjct: 176 DDRILKETGLVTI--EERGAHDKFWNRVMFPIMDVNNRVIGFGGRVMGAGEP-KYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + +I++ EGYMDV+++ QAG N V+SL Sbjct: 233 TKLFDKSRNLYGLNYAR------------LSREKYILICEGYMDVIAMHQAGFTNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL + + ++VL +D D G +AA +AI + G + + + +D Sbjct: 281 GTAFTTQHAALLKRYTDKVVLTYDSDGAGTKAALRAIPI---LRDVGISIRVLNMQPYKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF + I ++ N P+++ E + + + Sbjct: 338 PDEFIKNMGAEAFRERIEQARNSFLFEIDVLKRNYEMEDPEQKTEFYNQVAKKLCEFPEA 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ + G + +++ S + + S Sbjct: 398 LERDNYLEAVSREFFINYEDLKRLVNRMGARLGPVSPREEEESTSVKKKKDREDGKNQS- 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI +P + + + + + ++ +F E ++ Sbjct: 457 -----QRLLLTWLIENPFLFDKIEGIITPDDFIEDLYHQVARMVFDGHAAGNLNPAEILN 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + ++ L L + + + ++ Y EE+ Sbjct: 512 HFINDEEQYRVVAGLFNASLKESLDNEEQKKAFSETIMKVKKNSLDYASRNAAG--IEEL 569 Query: 599 EKQIAQVTAKGE 610 ++ I + A + Sbjct: 570 QRIIREQAALKD 581 >gi|306836613|ref|ZP_07469580.1| DNA primase [Corynebacterium accolens ATCC 49726] gi|304567535|gb|EFM43133.1| DNA primase [Corynebacterium accolens ATCC 49726] Length = 639 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 136/653 (20%), Positives = 251/653 (38%), Gaps = 52/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + P+ ++G+YV PF DEKTPSFH +G+ Sbjct: 5 RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + + + + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +F+ L+ +L +RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAVHEFYRKQLETPEAATARNFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRMGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+P Sbjct: 181 SFEELETAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+HK K L+ A + ++VEGY DV+++ AG++ V+S Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EGHQAVVVEGYTDVMAMYAAGIKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L ++ FDGD+ G +AA +A D + Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + + +T + R + Sbjct: 346 SVAPDGMDPCDLRLEKGDAAVRDLVADRIPMFEFVIQSVIADFRIDTAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+DQ L+ Y++ + + + + K A + Q + Sbjct: 406 IVAQIRDQPLQREYARRLAGWVGWNDPEEVLRQVRAEAKKPKKADTPTIRRFENAQPQPA 465 Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + PS +E L + P ++ + + Y N+ + + + + Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPEVVGSYFDGITADAYTNDAYRIVRQAISA 525 Query: 525 DFVEQKYFL------PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 +K + + + + +L + A + Y Sbjct: 526 VGGAEKGATMSGVDWIAAVAAEMQDLTGRNFVSELAVEAILPTDVGA----------EKY 575 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + ++ Q +++ Q+ ++ + L + L + ++ Sbjct: 576 ADSVLSRLQETVVGDQIAQLKAQLGRMRPTDDEAGYNSLFADLIALEQARREL 628 >gi|153827662|ref|ZP_01980329.1| DNA primase [Vibrio cholerae MZO-2] gi|149737862|gb|EDM52767.1| DNA primase [Vibrio cholerae MZO-2] Length = 609 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 27 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 82 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 201 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q G+ Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGIDY 309 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 430 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602 >gi|167463433|ref|ZP_02328522.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383679|ref|ZP_08057430.1| DNA primase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151891|gb|EFX44834.1| DNA primase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 608 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 160/636 (25%), Positives = 288/636 (45%), Gaps = 40/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ +L H I++++G+YV ++ CPFH E TPSF + Sbjct: 5 RIPEEVIEAVLKHHDIADVVGKYVHLTKQG-----HYLKGLCPFHSENTPSFTVTPERQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 Y+CF C G + FL + G SF E+V LA AG+P+ DP K+++ +T++I+ Sbjct: 60 YHCFGCGAGGGIIKFLREIEGYSFAEAVNHLAEEAGIPITWETADPVQTKQQQERTEVIK 119 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A + + LKN + K+ YL RGI I+ F++GYAP +L L + F Sbjct: 120 AHDHAAKVYQYILKNTEQGKQALDYLRSRGIADKLIDRFQIGYAPARMDTLVRQLERNQF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S + + GL+ + DRFR+R++FP+ G++IAF GR L KY+NSPE Sbjct: 180 SLSLMEKGGLISIKSDKNGYIDRFRDRIMFPLHDFHGKIIAFAGRAL-GDVKPKYMNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 +ILF+K +++YN A +K S I+L+EGYMDV+ +AG+ N V+++ Sbjct: 239 SILFNKSRSIYNLHHARAEARK----------SGEIVLLEGYMDVIKAWEAGITNAVATM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q +L + + R+++C+DGD G AAYK+I + G V ++ G+D Sbjct: 289 GTALTPEQSEILKRNADRVIVCYDGDPAGQNAAYKSIPI---LEKSGCAVKVAMIPEGKD 345 Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +I YG F +++ +++P + +N + ++ I + Sbjct: 346 PDEYITAYGPERFVRQIVEQAVPAMKYKLLFIRKNFKLHNEFDKLRYLKTATKMIAALHS 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK----GPSQRLMQSSLVK 473 R +Y + + + + + +K RD K + Sbjct: 406 PIDREHYLKQLSSDFDTSLESLKQDVAAIRFDLEKKQSLRDNKEFLWNNVRNNGNRVQKS 465 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L E LL +++ P + + +++ D ++ + L ++L++ + + Sbjct: 466 PSLFPAYHNAERQLLAIMMHDPEVCRYVQEQVGD-EFNVEDHAVLAAYLYAYYSQYAEPN 524 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L + L + GL V Y + + Y R + Sbjct: 525 LGRYMAMLEDTNLENLASSIALIGAKHGLN--------DKVIDDYIREIKKYPR----QQ 572 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++ ++++ Q G+ + A ++S + + Q+ Sbjct: 573 EIKQKKEEMRQAELSGDPLRAAQILSEIIALEKQLK 608 >gi|290967747|ref|ZP_06559302.1| DNA primase [Megasphaera genomosp. type_1 str. 28L] gi|290782263|gb|EFD94836.1| DNA primase [Megasphaera genomosp. type_1 str. 28L] Length = 603 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 171/632 (27%), Positives = 291/632 (46%), Gaps = 42/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +FI+ + I +++ +YV ++ N +WACCPFH EKT SF KGF Sbjct: 3 KFSSEFIEQVRQANDIVSVVSEYVSLKQQGRN-----FWACCPFHHEKTASFSVAADKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 +YCF CH GD +F+ SF E+V RLA A + LP P+ ++ + Sbjct: 58 FYCFGCHAAGDVFAFIMKQENLSFTEAVTRLAERAHISLPKTEQSPQETARQNLCRRFFE 117 Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A +FFH+ L+++ K Y R + I FKLG+APDS + L + +Q+G Sbjct: 118 INEMAGNFFHNCLLQSSLGKEGLAYFHSRHVSDDTIRAFKLGFAPDSWHMLTKAFQQRGV 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S +++ GL + + YD FR R+IFPIR RG+++ FGGR L KYLNSPE Sbjct: 178 SGAELVRLGLAKEKNG--NFYDAFRKRVIFPIRDGRGRIVGFGGRVL-DDSKPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K L+ A + K ILVEGYMDV+S G+ NVV+SL Sbjct: 235 TPIFNKRHILFALDMAQPAIYK----------EGCAILVEGYMDVVSAHNRGITNVVASL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q RLL + + ++VL +D D G +A +A+++V + + L +G+D Sbjct: 285 GTAFTTEQARLLQRQAAQLVLAYDMDAAGRQATMRAMEIVRGLH---VSIRVLSLGQGKD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I G AF + + + +D + + + P+ ++ + + + I D+ Sbjct: 342 PDEYITTVGPDAFRQAVAAAPNTLDYMLQTALQTYDSTVPEGKSAIMASIMPAVARIDDR 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + RLQ +E + R+ +++ + K ++ L + + Sbjct: 402 IVLEAFLTKAAQRLQVEETAVRSE---FNRFVERHPELKQGKLVITPHLERRLADSRGTD 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E +L L+ +P + + + + N Q ++ F+ + E++ + +I Sbjct: 459 VMAAAEENILRYLMEYPHTCERIQEMIPYTLFVNPLRQHIYQFILDAYAEKRTYTKADIQ 518 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 RL EL + + Q + + L RQ E Sbjct: 519 DRLSVEEEKELARIMVLQDVP--------------LDERVLNDYVKRFHLAGLQRQYAEH 564 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 K+ A + G+ + L +I E++ +I + Sbjct: 565 SKRAAAFSRTGDPQVMKEL-AICKEINEKIRK 595 >gi|317049602|ref|YP_004117250.1| DNA primase [Pantoea sp. At-9b] gi|316951219|gb|ADU70694.1| DNA primase [Pantoea sp. At-9b] Length = 581 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 178/622 (28%), Positives = 285/622 (45%), Gaps = 53/622 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA G+ +P + + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATQHGLEVPYEAGNGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ SL+ + + YL RG+ I+ F +GYAP + + Q+ Sbjct: 119 LLEGLNTFYQQSLRQPQAQPAQQYLATRGLSQQVIDHFAIGYAPPGWDNALKRFGQQQDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAG+L+ D +YDRFR+R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRIMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 PIFHKGRQLYGLYEAQKNHPQPAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTENVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +T D +A L I+ I + Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSTFLFDSLLPQVDLSTRDGKARLSTLALPLISQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + ++ P +R Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKLL----PKQADSGAAPTAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P L + L+ L S E ++ + Sbjct: 452 -----RVLVALLVQNPQFATMVP-ALEGLEQSKMAGLPLFVELVSRCSENPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + + EA D + L ++ E + Sbjct: 506 LYRGTNFSQTLETLATW--NHMIVDEEAEAVFQDSLASLYDS--------ALEQRLEAL- 554 Query: 600 KQIAQVTAKGEAEKTAILISIL 621 IA+ +G + L Sbjct: 555 --IARDRTEGLSAAERREFWAL 574 >gi|269219498|ref|ZP_06163352.1| DNA primase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211077|gb|EEZ77417.1| DNA primase [Actinomyces sp. oral taxon 848 str. F0332] Length = 662 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 159/678 (23%), Positives = 270/678 (39%), Gaps = 68/678 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I +++ QYV ++ CPFHDEKTPSFH G + Sbjct: 5 IRREDIDEVRSRTRIEDVVSQYVQLRPDGVDSQ----KGLCPFHDEKTPSFHIRPHIGRW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + SF+E+V+ LA AGV L + ++ + LI Sbjct: 61 HCFGCGEGGDVISFVERIEHVSFVEAVEILARKAGVELRYENDGRRERGDSGATRQRLID 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A DF+ L + + + LD+RG D+ AIE FK+GY+P+S + + LR++GF+ Sbjct: 121 AHRIAVDFYMAQLASPQGEAGRRMLDQRGFDAAAIERFKVGYSPNSWDGVLKELRRRGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPE 238 E +I +GL G+ YDRFR RL++PI S G I FG R L + KYLN+PE Sbjct: 181 EREIAASGLASQGNRGQ--YDRFRGRLMWPIMSITGDPIGFGARKLSDEDNGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + + R I++VEGY DV++ AGV+ V++ Sbjct: 239 TAIYKKSQVLYGLDMAKRAISQQRR----------IVVVEGYTDVMAAQLAGVETAVATC 288 Query: 299 GTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339 GTA ++++ + I+ FDGD G +AA KA Sbjct: 289 GTAFGSEHVKVVRRLIGDGADPAAGVILGSGAAYGGEIIFTFDGDAAGQKAALKAFQEDQ 348 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 + + G DP YG A +++ PL + + N+ + Sbjct: 349 AFAA---QTFVCVAPEGMDPCEVRMNYGDEAVREIVAARRPLFEFAIRSVLTGLPLNSAE 405 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---- 455 R + I+D+ LR Y++ + L GR R Sbjct: 406 GRTAGLRAAAPMVASIRDRVLRGEYTRQLAGWLGMDEGTVRRAVLSSGRRPASGRRMEGG 465 Query: 456 ----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRY 510 + + +R + + E L + P + Q EL + Sbjct: 466 QRRPNGGAQDGQERPAPVLAPRATVRDPVERVEREALGIYLQLPGLAGPAQMDELPSQTF 525 Query: 511 DNNELQKLWSFLFSDFVEQKYFLP-EEIHQR---LCERGFGELLKQLDRQVRDAGL---- 562 +++ + + Y E+ + L + ++R + +A Sbjct: 526 TVPVHRRVHEAIRAAGGAASYDKRVAELSAKGVPLEKAEEAAAGWYVERVIENADDVVGR 585 Query: 563 ------WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 E+ V + R ++RQ ++ ++ + + + + Sbjct: 586 AVAQLAVETLPESRPDRVERYVWGIAVSLIRQG-ITRQIGDLRSRLQRTPP--DDPQYSA 642 Query: 617 LISILHEVHIQIHQIESQ 634 L S L E+ Q ++Q Sbjct: 643 LFSRLIELEEQRRACDAQ 660 >gi|302869252|ref|YP_003837889.1| DNA primase [Micromonospora aurantiaca ATCC 27029] gi|302572111|gb|ADL48313.1| DNA primase [Micromonospora aurantiaca ATCC 27029] Length = 631 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 146/648 (22%), Positives = 250/648 (38%), Gaps = 44/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+++I + V G+ CPFHDEK+PSF+ + ++ Sbjct: 12 RIRDEDIALVRERTAIADVISEVVTLKSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 67 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 +YCF C V GD + FL SF+ESV+RLAA AG+ L P+ ++ + Sbjct: 68 FYCFGCGVGGDAIKFLMDAEHLSFVESVERLAARAGIQLRYVEDDRSTPRTRPQQGQRQR 127 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ A +F+ L A + +L RG D A E + G+APD L +HLRQ+ Sbjct: 128 LVAAHAAAVEFYRAQLTTAGARPAREFLAGRGFDRAAAERYGCGFAPDGWDLLTKHLRQQ 187 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GF+ ++++ GL + + DRFR RL++PIR G VI FG R L + KYLN Sbjct: 188 GFTHDELVIGGLSRPARSG-SLIDRFRRRLMWPIRDITGDVIGFGARKLFDDDDGPKYLN 246 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET ++ K LY A + K + +++VEGY DV++ A V V Sbjct: 247 TPETPIYKKSHVLYGIDLAKREIAKQGK----------VVVVEGYTDVMACHLADVPTAV 296 Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA + +L + + I+ FDGD G +AA +A + + R Sbjct: 297 ATCGTAFGGDHISVLRRVLFDSDERAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---RT 353 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + DP G A L+ PLVD + +T D R E Sbjct: 354 FIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRRA 413 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + IKD++ R Y + + L + P Sbjct: 414 APLVAKIKDREKRPEYVRKLAGDLGMEIEPVQRAVLTAANGQPAPGTPAAPARPRPG--- 470 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + S+ E L + P + + + Y + + + + + Sbjct: 471 ----APSVDSPRSMVEREALKLALQEPVLAGPMFDAVEATDYQHPVHVAVRAAVAAAGGA 526 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 +R+ + + L + + + + Y ++ Sbjct: 527 SGATGGAVWIERVRDACDDLAGQAL---IGELAVEPLRIDGEPDP---RYVSITMARLQW 580 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ + +++ +I +V ++ L L + + Q A Sbjct: 581 SSVTGRIRDLKSKIQRVNPVSNKDEYFALFGELLSLEQHARALREQAA 628 >gi|297580651|ref|ZP_06942577.1| DNA primase [Vibrio cholerae RC385] gi|297535067|gb|EFH73902.1| DNA primase [Vibrio cholerae RC385] Length = 609 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 27 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 82 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR ++ + KY Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITDQGTPKY 259 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 430 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602 >gi|16761984|ref|NP_457601.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143471|ref|NP_806813.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161044|ref|ZP_03346754.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425629|ref|ZP_03358379.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213616353|ref|ZP_03372179.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646107|ref|ZP_03376160.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289827082|ref|ZP_06545871.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298045|pir||AI0892 DNA primase [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504287|emb|CAD07735.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi] gi|29139105|gb|AAO70673.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 581 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDT 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|90580772|ref|ZP_01236575.1| DNA primase [Vibrio angustum S14] gi|90438040|gb|EAS63228.1| DNA primase [Vibrio angustum S14] Length = 585 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 162/607 (26%), Positives = 273/607 (44%), Gaps = 55/607 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DL+ I ++I V ++ N + ACCPFH+EKTPSF + K F Sbjct: 4 KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C V G+ L F+ F+++++ LA+ G+ +P + K + + Sbjct: 59 YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNNTHRGPKAADKRNY 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ + F+ L+ + YL RG+ ++ F +G+ PD +R + Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAIDYLKSRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S++ ++ G+LI+ DN YDRFR R++FPI RG+VI FGGR L + KYLNSP Sbjct: 179 ESQKALVNTGMLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY + L ++ + I++VEGYMDV++L Q GV V+S Sbjct: 237 ETDIFHKGRELYGLYEVLQTHREPNK----------IMVVEGYMDVVALAQFGVDYAVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGT+ T ++ L++ + +V C+DGD G AA++A++ L +L G ++ F+ L GE Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS IR GK AFE+ + E+ PL + L+ + + +A+L I+ + Sbjct: 347 DPDSCIRAEGKDAFEQRVDEATPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVPG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + + L + + + K K Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKTSKPVGQVQIKRTPM------------- 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535 ++ LI HP + + E ++N EL L + Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFENIELSGLNLLLSIVDKCRSNPNISTG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRD-AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + + +L V + + + + + + Q + +Q Sbjct: 505 QLLEHWRGTKNEATMARLAAWVLPLSKDEDNSLDVFLDAMDKIIDQCV---------KQQ 555 Query: 595 KEEIEKQ 601 E+++ + Sbjct: 556 IEQLQTK 562 >gi|254293485|ref|YP_003059508.1| DNA primase [Hirschia baltica ATCC 49814] gi|254042016|gb|ACT58811.1| DNA primase [Hirschia baltica ATCC 49814] Length = 645 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 179/643 (27%), Positives = 300/643 (46%), Gaps = 24/643 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + FI +L +PIS +G+ V R N + PF DE TPSF+ +D K Sbjct: 1 MRFSEAFIDELKDRLPISGYVGRKVKLVRSGKN-----FKGLSPFKDENTPSFYVDDDKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFS GD +SF+ G SF E+V++L +AG+ +P +K+ + L L Sbjct: 56 SYRCFSTQNSGDIISFVQETEGLSFQEAVEKLVQLAGMEMPTETKAEKKQVTKRKSLFEL 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E A F+ L+ ++ YL + RG+ A ++GYAP+ +L +HL + G + Sbjct: 116 MEAAVAFYEEQLREPVGEQAREYLSKSRGLGEGAWRRHRIGYAPEGWQTLHDHLIKMGAT 175 Query: 180 EEKIIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE------SVK 232 ++++E GL+ NS+ YD FR+R+IFPI G+ IA GGR L G K Sbjct: 176 AKELLEIGLVRPSKNSSKPPYDAFRHRIIFPILDPTGRPIALGGRALEPGHVLKEKGIPK 235 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS-SSFIILVEGYMDVLSLCQAGV 291 Y+NS ET LFHK +YN+ A + + K R + + +I+ EGYMDV+++ + G Sbjct: 236 YVNSSETPLFHKSSVIYNYGRARDAIYKLSRNASSADPFARGLIVTEGYMDVIAMAEHGF 295 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+ +GTALTE QL++LW++ P ++CFDGD+ G +AA +A+DL L L PG V Sbjct: 296 STAVAPMGTALTEEQLKMLWRVGPEPIMCFDGDEAGQKAAMRAVDLALPMLEPGKSVYVT 355 Query: 352 LLSRGEDPDSFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 +L +G DPD ++ G L+ + PLV++LW RE +TP+ RA E L Sbjct: 356 ILPQGMDPDDLLKTDGGEYGLRDLLRNARPLVELLWDRELNKEKLDTPERRAGFEARLDE 415 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ I ++++R Y + ++DR Q F+ R + ++ Sbjct: 416 AVSAIANEQVRRAYERELKDRRYQYFRDQRQAKQTPFRKNEWGGKNSSNFRGKNIAQGPV 475 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + +++ I+ P ++ E + LA + + ++ L + + Sbjct: 476 IKLADTRGLTGRTGLGMIVRAIDSPNLMDEAKEMLAMADFRDEDVLALRNAALDVQDFGE 535 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 I L + L R L + I ++ LA +RF Sbjct: 536 KVDRSAIAAHL---------RSLGRTRSAKLLEEYPNQEPIDPSSTIGREWLAALERFPT 586 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ K+E E + + E+ + + + +++ Sbjct: 587 VAALKDEAESEKNAFASANGVEEHKAEWARRKRLVAERQALKA 629 >gi|92113103|ref|YP_573031.1| DNA primase [Chromohalobacter salexigens DSM 3043] gi|91796193|gb|ABE58332.1| DNA primase [Chromohalobacter salexigens DSM 3043] Length = 613 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 177/629 (28%), Positives = 291/629 (46%), Gaps = 32/629 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + ++G+ V + N Y CPFH EK+PSF + K FY Sbjct: 5 IPQRFIDDLLARTDVVEIVGERVQLKKAGRN-----YSGLCPFHQEKSPSFTVSAEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119 +CF C V G+ L FL F E+V++LA+ G+ +P DP+ +++E+ + + + Sbjct: 60 HCFGCGVHGNALRFLMEFDHLRFPEAVEQLASRLGLDVPREGADDPQAQQRERRREEAVN 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E++ FF L + YL+ RG+ + + F +G+APD +L+ HL ++G S Sbjct: 120 LLELSASFFRERLAMSEGGDARDYLERRGLSADIVREFGIGFAPDKWEALKRHLTERGIS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + IE GLL+ ++S SYDRFRNR++FPIR +G+ IAFGGR L KYLNSPET Sbjct: 180 DAVQIEYGLLVHREDSGRSYDRFRNRVMFPIRDWKGRTIAFGGRVL-GDAKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G++N ++LG Sbjct: 239 PVFHKGRELYGLYEARQANARLER----------MLVVEGYMDVVALAQFGIRNACATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+L+E L+ L++L +V CFDGD G +AA +A++ VL +I G +V F+ L G+DP Sbjct: 289 TSLSEDHLQRLFRLVGEVVFCFDGDRAGRQAARRALETVLPSMIDGRQVRFLFLPEGDDP 348 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R G AFE ++ + PL + L+ + E R ++R + + + + Sbjct: 349 DSLVRREGAEAFENRVLCAAPLSEFLFDQAAEGRDLQRIEDRERFATAVLRALERLPEGV 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + R + + + + + ++ K Sbjct: 409 LKSLLLRELSQRTGVEQANFQALLARADTSQAPHDEGADEASSAPEDAGETPARKAGARD 468 Query: 479 KPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 LL L++ PA++ + L + L + Y + Sbjct: 469 GALGLVGRLLHLLVHEPALVSRLPESLDWCPDGVGD---GALCHEVVRLIRAGGYRNAQV 525 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + GE L L R+ +G L R + + Sbjct: 526 LLAHFHGTPEGERLAWLARR------ELLMPREARGAEVEGLVDGLRRRHSQRSPQEEYD 579 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + Q E+ L +L E+ Sbjct: 580 ALLAR-TQAGECLSREERQRLNELLMELK 607 >gi|283797718|ref|ZP_06346871.1| DNA primase [Clostridium sp. M62/1] gi|291074614|gb|EFE11978.1| DNA primase [Clostridium sp. M62/1] Length = 598 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 153/636 (24%), Positives = 267/636 (41%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ I ++I YV ++ +N Y+ CPFH EK+PSF + SK Sbjct: 1 MYYPEEVIEEVRTRSDIVDIISGYVKLQKKGSN-----YFGLCPFHHEKSPSFSVSQSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C V G+ +F+ SF E+V+ LA +GV LP + + ++ L+ Sbjct: 56 MYHCFGCGVSGNVFTFVMEYENYSFREAVELLAERSGVKLPKVEYSREARAQADLRAALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A ++F++ LK + + + YL R + I F LG+A + L L+ KG+ Sbjct: 116 EINKLAANYFYYQLKQPQGEAGYRYLTGRELTDQTIRHFGLGFANKTSDDLYRFLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + E GL+ S D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 DDSLLKETGLVTI--EERGSRDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + +++L EGYMDV+++ QAG N V+SL Sbjct: 233 TKLFDKSRNLYGLNFAR------------LSREKYMLLCEGYMDVIAMHQAGFTNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL + + +++L +D D G++AA +AI + G V + + +D Sbjct: 281 GTAFTAQHAALLKRYTDQVILTYDSDGAGVKAALRAIPI---LKAVGMSVKVLNMKPCKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF + I E+ + S P+++ + + Sbjct: 338 PDEFIKSLGADAFRQRISEARNSFLFEIDTIRQKYSMEDPEQKTAFYNETARKLLEFSEA 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVK 473 R Y QA+ ++ + G + + + K Sbjct: 398 LERDNYIQAVSREYFISYEDLKRLVNSLGSRYGSALPGTRADREGVGETYAQKPREIQKK 457 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E LL LI P + ++ + + ++ +F + + Sbjct: 458 RDREEGIRQSERLLLTWLIEEPRLFEKIRGIIGPEDFVKPLYRRAAEMVFEGHEKGEVNP 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + + G + L + L + + D +L Sbjct: 518 AAILNHFIDDEGNYREVAALFNASLNDSLSNEEQKKAFAD---------------TVLKV 562 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +K ++ Q + E ++ + L +HI + Sbjct: 563 KKSSLDYQSRNASDLNELQRIIKEQAELANLHISLE 598 >gi|313837243|gb|EFS74957.1| DNA primase [Propionibacterium acnes HL037PA2] gi|314927737|gb|EFS91568.1| DNA primase [Propionibacterium acnes HL044PA1] gi|314972015|gb|EFT16113.1| DNA primase [Propionibacterium acnes HL037PA3] gi|328907207|gb|EGG26973.1| DNA primase [Propionibacterium sp. P08] Length = 617 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 144/635 (22%), Positives = 253/635 (39%), Gaps = 45/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV NA G CPFHDEKTPSF S+G Sbjct: 4 RINEEDIALVRERARIDEVVGEYVTL----RNAGGGSLKGLCPFHDEKTPSFQVTPSRGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 60 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKTGVQLRIIDDGRPGLEPGLRMQILAA 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 120 NEAAAKFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRGGHVLRDHLVAKGFTP 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +GV V++ Sbjct: 235 TPVYKKSHVLYGLDMARANIGKK----------SQAVIVEGYTDVMAAHLSGVDTAVAAC 284 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRVPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 401 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + + Sbjct: 402 VTSIRDQSLVDGYVRELSQVVGTDIDLVRREVSRARRQHRSEPQLTVVPPPEPQ-QSPGI 460 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 461 PWPDPADVSLSVERGFLKLALQHPGLFDEKWDQVEVEDLRHPAYQAVFEAVLAV-----P 515 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 516 RGQDRWAEKVGEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + ++ ++ + + + + S L + Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLMTLEA 603 >gi|152971990|ref|YP_001337099.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956839|gb|ABR78869.1| DNA primase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 581 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNRPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL +RG+ S I F +GYAP ++ + + Sbjct: 119 LLDGLNAFYQQSLMQPAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+S L + Q ++ + Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L++L +W + +I Q + +L + LL ++EE+ Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA+ G +E+ L +I E+ + Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581 >gi|227080701|ref|YP_002809252.1| DNA primase [Vibrio cholerae M66-2] gi|255744254|ref|ZP_05418207.1| DNA primase [Vibrio cholera CIRS 101] gi|227008589|gb|ACP04801.1| DNA primase [Vibrio cholerae M66-2] gi|227012344|gb|ACP08554.1| DNA primase [Vibrio cholerae O395] gi|255738194|gb|EET93586.1| DNA primase [Vibrio cholera CIRS 101] Length = 587 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 60 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 348 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 408 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 457 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 458 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580 >gi|254477615|ref|ZP_05091001.1| DNA primase [Ruegeria sp. R11] gi|214031858|gb|EEB72693.1| DNA primase [Ruegeria sp. R11] Length = 732 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 178/442 (40%), Positives = 270/442 (61%), Gaps = 10/442 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WD+RK+N KGD W+ CPFH EKT SFH +D KG Sbjct: 1 MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWSPCPFHHEKTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ F+E+V+ LA AG+ +P DP+ ++K+ ++ L + Sbjct: 61 FYYCFGCHAKGDALKFIQETENVGFMEAVEILAQEAGMEMPARDPRAQQKQDHRSQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK + + YL RG+ A + +++G+APD +L + LR KG E Sbjct: 121 MEQAVRFFRMQLKTRQAEEARSYLARRGLSPEAQDRWEIGFAPDGWQNLWDALRGKGVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ELILGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPNDNAKYLNSPETA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A K + +++ EGYMDV++L + G V+ LGT Sbjct: 241 LFDKGRSLYNHGPARTASGK----------TGQLLVAEGYMDVIALSEGGFAASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE+QL +LW+++ ++ DGD GLRAA + IDL L L G + F L+ G+DPD Sbjct: 291 AITEHQLHMLWRIADEPIIALDGDKAGLRAAMRLIDLALPLLEAGKSLRFALMPEGKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G A + ++ +++P+V +LW+RETE + F++P+ +A L+ L++ I I+D + Sbjct: 351 DLIRSEGPEAVQAVLDQAMPMVKLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITE 442 R +Y + I+D +LF+ Sbjct: 411 RRHYGEDIQDMRWELFRGGRPR 432 Score = 68.0 bits (164), Expect = 4e-09, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 21/218 (9%) Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 GR + P Q S L G +REA +L T+I PA++ + Sbjct: 518 RDGGRPPWRGKN--APPTPLQTTRNSLLAGGSEESLVRVREAVILATVITTPAVIAQFEA 575 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 L + ++ L + ++ P+ + + + L+ L A + Sbjct: 576 NLERMACVGSDHALLRDLVLRHGIDA----PDRLKEEIDAAAGAHALENLFALRHVAIMP 631 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQVTAKGE 610 ++ + A + R L + E E+ + A+ + Sbjct: 632 CLRRPGDVETASLTLAEEFAKLEASRGLDAELAEAEEDLSGLADEAVTWRLGQAAEARNK 691 Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 A ++ ++V ++ +E + FG + R+ Sbjct: 692 AVRSENEDRAQYDVGENGARLNREER--DAFGALLERI 727 >gi|218133124|ref|ZP_03461928.1| hypothetical protein BACPEC_00986 [Bacteroides pectinophilus ATCC 43243] gi|217991997|gb|EEC58001.1| hypothetical protein BACPEC_00986 [Bacteroides pectinophilus ATCC 43243] Length = 584 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 151/628 (24%), Positives = 262/628 (41%), Gaps = 51/628 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV + +N Y+ CPFH+EK+ SF + SK Sbjct: 1 MRYSEELIEEVRSRNDIVDVISGYVKLKKSGSN-----YFGLCPFHNEKSGSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ ++F+ +F+E+V+ LA AG+ LP P+ K I++ L+ Sbjct: 56 MYYCFGCGAGGNVITFIMEYENYTFMEAVRMLAERAGIELPQMEETPEERKSRDIRSQLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A ++ H L+ YL +R + I+ F LGY+ L +++ KG+ Sbjct: 116 EINKLAAVYYFHQLRGQNGSTAMNYLKKRELGDETIQRFGLGYSSMYSDDLYRYIKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ + E+GL D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 KDDILKESGL--FTYGDGKVTDKFWNRVMFPIMDMNNRVIGFGGRVM-GDGKPKYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + II+ EGYMDV+SL QAG V+SL Sbjct: 233 TKLFDKSRNLYGLNIAR------------TSRKPNIIICEGYMDVISLHQAGFNQAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q L+ + + ++++ +D D G++AA +AI + G + + +D Sbjct: 281 GTALTSGQASLMKRYTDQVLITYDSDGAGVKAALRAIPI---LKEAGLTTKVINMKPYKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF++ I ++ +N PD + + I +++ Sbjct: 338 PDEFIKGLGAEAFQERIDKAQNSFMYEISAMEQNYDLTDPDSKTRFFNEVAGRIVGFEEE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ D+ YG D + S + Sbjct: 398 LERNNYIEAVADKYMVSMDALKAMVGNYGNRVGIVKDRHDSRRTSSSHKEKE-------D 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 S + LL L+ ++ + L+ + + L+ + P I Sbjct: 451 GISQAQKILLTWLVQDMSLYPKVAAYLSPDDFIEEPFHDVAVRLYEQL-DNGQINPAAII 509 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + + E + + + Q + K+ L +I Sbjct: 510 STFDDGETQKKVASIFN-------RELAEELSDSERERALNQTVKKIKKNSL------DI 556 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626 + + + + + +I E+ Sbjct: 557 KSR-----SVTDVAQLQNIIKEQKEIQN 579 >gi|70732950|ref|YP_262721.1| DNA primase [Pseudomonas fluorescens Pf-5] gi|68347249|gb|AAY94855.1| DNA primase [Pseudomonas fluorescens Pf-5] Length = 657 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 175/666 (26%), Positives = 292/666 (43%), Gaps = 78/666 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRLQIKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ---TDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + +++ Q + L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEELAKAAGMEIPREESSRGQRKPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A D++ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLTAAADYYRQALKSHPARKAAVDYLKGRGLTGEIARDFGLGFAPPGWDNLFKHLSSDTL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ +I+AGLLI+ + YDRFR+R++FPIR +RG++IAFGGR L + KYLNSPE Sbjct: 180 QQKAMIDAGLLIENAETGKRYDRFRDRVMFPIRDTRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY F A + + II+VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLFEARKNNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E L+ L+++ P ++ CFDGD G +AA++A++ L L G R F+ L GED Sbjct: 289 GTATSEEHLKRLFRIVPNVLFCFDGDQAGRKAAWRALEATLTCLQDGRRARFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD+ +R G AF + + PL D +++ + + + +A L I I Sbjct: 349 PDTLVRSEGTDAFRARINQHAQPLADYFFQQLIDEADPRSLEGKAHLATLAAPLIEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 ANLRTLMRQRLSEITGLTNETVNQLAHSAPPEAPPVYDAGIDYDAMPDYADYHEPHQEAY 468 Query: 442 -------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 G +N ++ + ++ + L TL++H Sbjct: 469 APQQEWTPKKNAGGKKWENKPWDKNGKGKRQGDRDQPRGPRIPAAVEPPTLSALRTLLHH 528 Query: 495 PAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLK 551 P + ++ + +++ +L L + ++ R G LL Sbjct: 529 PQLAEKVEDA---GHFADDDNTNTQLLVALIEAVQKNPKLRSIHQLMARWHGTQQGHLLT 585 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 L + W + +L+ +R R+L + + + ++++++ + Sbjct: 586 ALAEKE-----WLIDGDNLEQQFFDTIN-SLSARQRERVLEQLLR--KSRQSELSSEEKK 637 Query: 612 EKTAIL 617 + +L Sbjct: 638 QLVELL 643 >gi|15642769|ref|NP_230169.1| DNA primase [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 587 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 60 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ A +LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRSSEDMLVTAVMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 348 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 408 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 457 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 458 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580 >gi|289642670|ref|ZP_06474810.1| DNA primase [Frankia symbiont of Datisca glomerata] gi|289507500|gb|EFD28459.1| DNA primase [Frankia symbiont of Datisca glomerata] Length = 645 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 153/657 (23%), Positives = 260/657 (39%), Gaps = 46/657 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + PI+++IG YV + G CPFHDEKTPSF+ G Sbjct: 4 RIRDADVAAVRDRSPIADIIGDYVQLRPVGS----GQLRGLCPFHDEKTPSFNVRPQVGA 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 Y+CF C V GD ++F+ A+ G SF E+V+RLA AG+ L + + + L+ Sbjct: 60 YHCFGCGVGGDVIAFVRAIDGLSFPEAVERLARRAGIALTYEGGGVTSRAVTSQRQRLLD 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L A +L RG D A F +GYAP +L HL + F+ Sbjct: 120 AHRAAAEFYAERLAGAEAGDGRAFLAARGFDQEAAARFGVGYAPAGWDTLTRHLMGRHFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++ GL + + DRF RL++PI G V+ FG R L+ + KYLN+PE Sbjct: 180 AAELVLGGLAKQS-SRGSLIDRFHRRLVWPICDLAGDVVGFGARRLAADDPGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K LY A + + +++VEGY DV++ AGV V+S Sbjct: 239 TPLFKKANLLYGADLARREIARRY----------QVVVVEGYTDVMACHLAGVPTAVASC 288 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + +L + +V FDGD+ G +AA +A + + + Sbjct: 289 GTAFGSEHVTVLRRLLMDQSEHRGEVVFTFDGDEAGRKAAIRAFEFEERFVT---QTFVA 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A L+ LPLV+ + + +T + R Sbjct: 346 IEPSGLDPCDLRVQRGDVAVRDLVASRLPLVEFAIRGKLAGFDLDTTEGRLAAIDAAAPL 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IN +KD+ LR+ Y+ + + L L ++++ R GP+ + Sbjct: 406 INKLKDRGLRHRYAVNLDNWLGFLDEEFVVRRVAEHRPRGAAGGTASLDGPAHGQGDHAA 465 Query: 472 VKGKLSKKPSL--------------REAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 G+ + L E +L + +P + + L+ + E + Sbjct: 466 RGGRTGGRAELPRRHDAVADDTVVAVEREVLKVALQYPGLAGPVFDTLSPELFTVQEHRA 525 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + Q + +L R V + + + + DV Sbjct: 526 VREVIAAVGGVCAGLPAAGDVQTWVKTVVEAAGQDELRRFVIELAVEAVFCDH---DVDD 582 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 Y + ++R+ +++ ++ ++ +AE L + Q+ Sbjct: 583 RYVDEQMSRVQELQVTRRIADLKSRVQRLNPVTDAETFRRAYGELIALEQHKRQLRE 639 >gi|56415150|ref|YP_152225.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168819724|ref|ZP_02831724.1| DNA primase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197364080|ref|YP_002143717.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129407|gb|AAV78913.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095557|emb|CAR61122.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205343289|gb|EDZ30053.1| DNA primase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087664|emb|CBY97428.1| DNA primase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 581 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 174/631 (27%), Positives = 294/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + VV+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYVVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|118469474|ref|YP_888754.1| DNA primase [Mycobacterium smegmatis str. MC2 155] gi|9910813|sp|O52200|PRIM_MYCS2 RecName: Full=DNA primase gi|2739100|gb|AAB96635.1| primase [Mycobacterium smegmatis str. MC2 155] gi|118170761|gb|ABK71657.1| DNA primase [Mycobacterium smegmatis str. MC2 155] Length = 636 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 142/646 (21%), Positives = 256/646 (39%), Gaps = 37/646 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I +++G YV R CPFHDEKTPSFH + G Sbjct: 7 RIPDRDIAAIREKVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKTPSFHVRPNHGH 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C GD +F+ + SF+E+V+ LA G + +++ ++ L+ Sbjct: 63 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADKVGYTVTYTGSSTTNVQRDRGSRSRLL 122 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ +L++ YL ER D+ A F GYAP L +HL +KGF Sbjct: 123 AANAAAAEFYAEALQSEEAAPARQYLTERNFDAAAAAKFGCGYAPSGWDKLTKHLLRKGF 182 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNS 236 +++ AGL + DRF RL++PIR S G+ I FG R L + + Y+N+ Sbjct: 183 EFKELEAAGLSRE--GKRGPMDRFHRRLLWPIRVSSGETIGFGARRLFDDDPNQAKYVNT 240 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K + L+ A + K ++VEGY DV+++ AGV V+ Sbjct: 241 PETVLYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVA 290 Query: 297 SLGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 S GTA E L +L +L ++ FDGDD G AA KA + + Sbjct: 291 SCGTAFGEQHLSMLRRLMMDDNFFRGELIYVFDGDDAGRAAAVKAFEGEQNLSG---QSF 347 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + + G DP G A L+ PL + + + ++ + R Sbjct: 348 VAVAADGMDPCDLRLRSGDGALRDLVARRTPLFEFVIRSALAEHDLDSAEGRVAALRRCV 407 Query: 410 NCINHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + IKD LR Y++ + + + I + + +R + + R Sbjct: 408 PMLARIKDPTLRDEYARQLAGWVGWDNVAQVIGRVREEAKGGGRKDNNRRGQETAARPKP 467 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + + + L + +PA+ + L + + + + + + Sbjct: 468 PPVQRPDPTDPTLWPQREALKAGLQYPALAGPVFDTLTVESFTHPGYGAVRTAMEAAGGT 527 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + + E+ L ++ + E Y ++ + Sbjct: 528 SAGITGAQWIETVREQTTSPAAANLVNELSVETINVEDDEKLP-----RYISSVLARLQE 582 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 583 VWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMESYRRSLLEQ 628 >gi|229031942|ref|ZP_04187929.1| DNA primase [Bacillus cereus AH1271] gi|228729406|gb|EEL80396.1| DNA primase [Bacillus cereus AH1271] Length = 598 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLQRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKTE 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|121591709|ref|ZP_01678934.1| DNA primase [Vibrio cholerae 2740-80] gi|121728935|ref|ZP_01681941.1| DNA primase [Vibrio cholerae V52] gi|147674914|ref|YP_001216018.1| DNA primase [Vibrio cholerae O395] gi|254850757|ref|ZP_05240107.1| DNA primase [Vibrio cholerae MO10] gi|298500979|ref|ZP_07010780.1| DNA primase [Vibrio cholerae MAK 757] gi|121546431|gb|EAX56666.1| DNA primase [Vibrio cholerae 2740-80] gi|121628783|gb|EAX61247.1| DNA primase [Vibrio cholerae V52] gi|146316797|gb|ABQ21336.1| DNA primase [Vibrio cholerae O395] gi|254846462|gb|EET24876.1| DNA primase [Vibrio cholerae MO10] gi|297540227|gb|EFH76287.1| DNA primase [Vibrio cholerae MAK 757] Length = 609 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 27 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 82 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 430 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 479 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602 >gi|194446779|ref|YP_002042477.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405442|gb|ACF65664.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 581 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 292/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L + E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWMLNQELARK 581 >gi|238918479|ref|YP_002931993.1| DNA primase [Edwardsiella ictaluri 93-146] gi|238868047|gb|ACR67758.1| DNA primase, putative [Edwardsiella ictaluri 93-146] Length = 599 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 177/625 (28%), Positives = 287/625 (45%), Gaps = 55/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I L+ V ++ N Y ACCPFH EKTPSF N K F Sbjct: 21 RIPRVFINDLLARTDIVELVDARVKLKKQGKN-----YHACCPFHSEKTPSFTVNADKQF 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA +AG+ +P + + + +L + Sbjct: 76 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGSGPSQMERHQRQNLYQ 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ ++ SL+ + YL RG+ ++ F +GYAP + + + Sbjct: 136 LMDGLCGYYQQSLRQPGATQAQQYLTGRGMSQAIMDSFAIGYAPQGWDNALKRFGRDAGG 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ + + SYDRFR+R++ PIR RG+VIAFGGR L G + KYLNSPET Sbjct: 196 RTALNDAGMLV-NNENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 253 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + AL + + R +++VEGYMDV++L Q GV V+SLG Sbjct: 254 EIFHKGRQLFGLYEALQHAAQPER----------LLVVEGYMDVIALAQYGVNYAVASLG 303 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD+ G AA++A++ L +L G ++ F+ L GEDP Sbjct: 304 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDP 363 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR G AFE+ + ++ PL L+ +TPD R +L I + + Sbjct: 364 DTLIRKEGAEAFERRMNDAHPLSTFLFDSLLPQVDLSTPDGRTKLSALALPLIGQVPGET 423 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q++ +L L + + KN + K + Sbjct: 424 LRLYLRQSLGQKLGILDDSQLEKLLPRRSEAVKNYQPPRLKPTTM--------------- 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +PA+ E L + + L+ L + Q ++ Sbjct: 469 -----RILIALLVQNPALAAEVP-TLDGLH-QHPLPGLPLFIELVETCLAQPGLTTGQLL 521 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + L+ L + E + + Y L + + Sbjct: 522 ELYRDNKYASQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QRL 568 Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623 E+ IA+ G + L+E Sbjct: 569 EQLIARARTDGLTPAEREEVRSLNE 593 >gi|30264363|ref|NP_846740.1| DNA primase [Bacillus anthracis str. Ames] gi|47529812|ref|YP_021161.1| DNA primase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187191|ref|YP_030443.1| DNA primase [Bacillus anthracis str. Sterne] gi|229603180|ref|YP_002868582.1| DNA primase [Bacillus anthracis str. A0248] gi|254684051|ref|ZP_05147911.1| DNA primase [Bacillus anthracis str. CNEVA-9066] gi|254721885|ref|ZP_05183674.1| DNA primase [Bacillus anthracis str. A1055] gi|254736400|ref|ZP_05194106.1| DNA primase [Bacillus anthracis str. Western North America USA6153] gi|254750875|ref|ZP_05202914.1| DNA primase [Bacillus anthracis str. Vollum] gi|254757798|ref|ZP_05209825.1| DNA primase [Bacillus anthracis str. Australia 94] gi|30259021|gb|AAP28226.1| DNA primase [Bacillus anthracis str. Ames] gi|47504960|gb|AAT33636.1| DNA primase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181118|gb|AAT56494.1| DNA primase [Bacillus anthracis str. Sterne] gi|229267588|gb|ACQ49225.1| DNA primase [Bacillus anthracis str. A0248] Length = 598 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 159/630 (25%), Positives = 276/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E ++ + R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEEVLQSHLET-----LRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|321312004|ref|YP_004204291.1| DNA primase [Bacillus subtilis BSn5] gi|320018278|gb|ADV93264.1| DNA primase [Bacillus subtilis BSn5] Length = 603 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 152/570 (26%), Positives = 266/570 (46%), Gaps = 26/570 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA +L G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S + + K + K L + K +L Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +++++ + +++ +E + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + R+ + +LL + + L A Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552 >gi|227499200|ref|ZP_03929335.1| DNA primase [Acidaminococcus sp. D21] gi|226904647|gb|EEH90565.1| DNA primase [Acidaminococcus sp. D21] Length = 605 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 159/633 (25%), Positives = 275/633 (43%), Gaps = 45/633 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F + + I +++ + VD ++ +W CCPFH EKTPSF N KGF++C Sbjct: 9 ESFKEQVRQAADIVSVVSETVDLKKKGR-----RFWGCCPFHSEKTPSFTVNPEKGFFHC 63 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122 F C GD +F+ SF+E+ + LA G+P+P + E+ +E+ + +++ E Sbjct: 64 FGCGAGGDVFTFVMKRDHVSFVEAERILANKYGIPIPEPEKTAEEIRREQEEKEIVGTNE 123 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A FFH L K K YL RGI +E F+LG AP + + L ++G E+ Sbjct: 124 LAARFFHACLTKTQYGKEGLTYLASRGIGMDIVESFELGLAPPDAQTFHKALEKRGIPEK 183 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 +++AGL I +S YD+FR R++ PI++ RG+V+ F GR L K KY+N+PET Sbjct: 184 TLLKAGL-IGQSDSGRIYDKFRERIMIPIKNPRGKVVGFTGRILRKEASPAKYMNTPETS 242 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 FHKG+ L+ AL ++K ++VEG+MD +SL AG+ V+S+GT Sbjct: 243 WFHKGRLLFGMDRALPSIRK----------RRQALIVEGHMDAISLHAAGITWAVASMGT 292 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TEYQ +LL +++P ++ CFD D+ G AA ++I + L G + ++ G+DPD Sbjct: 293 AFTEYQAKLLKRVTPEVIFCFDSDNAGRNAAMRSIPIAL---AVGLECRVMHVTDGKDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G+ AF L+ ++ +D T + + + Sbjct: 350 EFIRKDGQEAFLSLLDQAKGGIDYEVDTVLSRSDVTTLSGKVGAVSEILPFFKDCRSDVE 409 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + RL + +E+ R + K + Sbjct: 410 VGERIRDLSRRLVLDEGEIRSEYQKLVRPNGSGRPFNPEWL--------LQKKVAIKSPT 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L L+ I +Q + + +++ + + ++ + Sbjct: 462 QQAERGVLYALLMGLEIDPDQAGFAHTDAFSTAARRAIFTSYCARKGAGTFHDGRDLFED 521 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E G EL L + + + + L + L ++ E + Sbjct: 522 VNEEGAAELSTILASSI------------PQETLPEVLRDCL-FRLQTATLEKEYERHSE 568 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + +G EK + + ++I + S Sbjct: 569 LAQRYEKEGN-EKFLEELQECRRIRMEIRNLRS 600 >gi|16766510|ref|NP_462125.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161616203|ref|YP_001590168.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551874|ref|ZP_02345627.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990235|ref|ZP_02571335.1| DNA primase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168231813|ref|ZP_02656871.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237908|ref|ZP_02662966.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243041|ref|ZP_02667973.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262828|ref|ZP_02684801.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168463577|ref|ZP_02697494.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450817|ref|YP_002047208.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472212|ref|ZP_03078196.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735480|ref|YP_002116167.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251239|ref|YP_002148140.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264535|ref|ZP_03164609.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200389149|ref|ZP_03215761.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205354125|ref|YP_002227926.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858468|ref|YP_002245119.1| DNA primase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224585013|ref|YP_002638812.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|130909|sp|P07362|PRIM_SALTY RecName: Full=DNA primase gi|154405|gb|AAA27241.1| dnaG protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16421767|gb|AAL22084.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365567|gb|ABX69335.1| hypothetical protein SPAB_04006 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409121|gb|ACF69340.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458576|gb|EDX47415.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710982|gb|ACF90203.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195633226|gb|EDX51640.1| DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214942|gb|ACH52339.1| DNA primase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242790|gb|EDY25410.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289182|gb|EDY28551.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199606247|gb|EDZ04792.1| DNA primase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273906|emb|CAR38908.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323288|gb|EDZ11127.1| DNA primase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205331063|gb|EDZ17827.1| DNA primase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333716|gb|EDZ20480.1| DNA primase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337854|gb|EDZ24618.1| DNA primase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205348472|gb|EDZ35103.1| DNA primase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710271|emb|CAR34629.1| DNA primase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469541|gb|ACN47371.1| DNA primase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261248340|emb|CBG26177.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995405|gb|ACY90290.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159763|emb|CBW19282.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914238|dbj|BAJ38212.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225893|gb|EFX50947.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131571|gb|ADX19001.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326629244|gb|EGE35587.1| DNA primase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332990076|gb|AEF09059.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 581 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|229512572|ref|ZP_04402043.1| DNA primase [Vibrio cholerae TMA 21] gi|229530332|ref|ZP_04419720.1| DNA primase [Vibrio cholerae 12129(1)] gi|229332105|gb|EEN97593.1| DNA primase [Vibrio cholerae 12129(1)] gi|229350465|gb|EEO15414.1| DNA primase [Vibrio cholerae TMA 21] Length = 601 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 19 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + + K + Sbjct: 74 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPYSPFAKNTPAVKSED 133 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 361 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 422 IDKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594 >gi|49481308|ref|YP_038351.1| DNA primase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332864|gb|AAT63510.1| DNA primase [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 598 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 159/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLNVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEGYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|228929336|ref|ZP_04092361.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830350|gb|EEM75962.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 598 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTPLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|229507129|ref|ZP_04396635.1| DNA primase [Vibrio cholerae BX 330286] gi|229509008|ref|ZP_04398496.1| DNA primase [Vibrio cholerae B33] gi|229519676|ref|ZP_04409119.1| DNA primase [Vibrio cholerae RC9] gi|229606192|ref|YP_002876840.1| DNA primase [Vibrio cholerae MJ-1236] gi|229344365|gb|EEO09340.1| DNA primase [Vibrio cholerae RC9] gi|229353933|gb|EEO18867.1| DNA primase [Vibrio cholerae B33] gi|229355874|gb|EEO20794.1| DNA primase [Vibrio cholerae BX 330286] gi|229368847|gb|ACQ59270.1| DNA primase [Vibrio cholerae MJ-1236] Length = 601 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 289/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 19 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 74 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 361 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 422 IDKIPDPFLQEILEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594 >gi|227504572|ref|ZP_03934621.1| DNA primase [Corynebacterium striatum ATCC 6940] gi|227198832|gb|EEI78880.1| DNA primase [Corynebacterium striatum ATCC 6940] Length = 646 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 138/653 (21%), Positives = 250/653 (38%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF +EKTPSFH +G+ Sbjct: 5 RIPESDIQAIRERAPIEEIVGEYVQLKPAG----YDSLKGLSPFKEEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + + + + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGNRNEKPGTRQRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +F+ L+ + +L RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAVHEFYRQQLETPQAATAREFLLNRGFSREIIYEFECGYAPEGWDTATKHLLRMGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L ++ KY+N+P Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDNLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+HK K L+ A + + ++VEGY DV+++ AGV+ V+S Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EAHQAVVVEGYTDVMAMYAAGVKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L + ++ FDGD+ G +A +A + Sbjct: 289 CGTAFGGDHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAVMRAFQGEQAFTG---QSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A +LI + +P+ + + + +T + R + Sbjct: 346 SVAPDGMDPCDLRLAKGDAAVRELIADRIPMFEFVIQSVLSEHRIDTAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ--QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-LM 467 + I+D L+ Y++ + + + R K++ R R P + Sbjct: 406 VVAQIRDAPLQREYARRLAGWVGWPNPEEVLQQVQQEARRPKKQDKRARLADAPIKAGTP 465 Query: 468 QSSLVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + + PS RE L + +P + + + Y N + + Sbjct: 466 APAQQNTPVFHVPSPRETHLWPQREALKLALQYPGLAGSYFDGITADAYSNESYRIVREA 525 Query: 522 L--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGY 578 + E + + V + + + + + Y Sbjct: 526 ISTVGGVAAGANLPSVEWIAAVAGEMLDLTAR---NFVSELAVEPIKVGDESDPKAWEVY 582 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + + Q +I+ Q+ ++ + + L + L + ++ Sbjct: 583 ADSVLSRLQEVRVGDQVAQIKAQLGRMRPSDDEQAYNSLFADLVALEQARREL 635 >gi|291484967|dbj|BAI86042.1| DNA primase [Bacillus subtilis subsp. natto BEST195] Length = 603 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 152/570 (26%), Positives = 267/570 (46%), Gaps = 26/570 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I+ F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA +L G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S + + K + K L + K +L Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +++++ + +++ +E + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + R+ + +LL + + L A Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552 >gi|330469556|ref|YP_004407299.1| DNA primase [Verrucosispora maris AB-18-032] gi|328812527|gb|AEB46699.1| DNA primase [Verrucosispora maris AB-18-032] Length = 620 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 145/649 (22%), Positives = 252/649 (38%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+ +I V G+ CPFHDEK+PSF+ + ++ Sbjct: 4 RIRDEDIALVRERASIAEVISDTVTLKSAGA----GNLKGLCPFHDEKSPSFNVSPARNV 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEK-IQT 115 +YCF C GD + FL SF+E+V+RLAA G+ L P+ E+ ++ + Sbjct: 60 WYCFGCGAGGDAIKFLMDAEHLSFVEAVERLAARVGLQLRYVEDDRSTPRRERPQQGQRQ 119 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ A +F+ L A + +L +RG D A E + G+AP+ L HLRQ Sbjct: 120 RLVAAHAAAAEFYTAQLTTAGARAAREFLAQRGFDRAAAERYGCGFAPEGWDPLTRHLRQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 +GFS ++++ AGL + + DRFR RL++PIR G VI FG R L + KYL Sbjct: 180 RGFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVIGFGARKLFDDDDGPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+PET ++ K + LY A + K R +++VEGY DV++ AGV Sbjct: 239 NTPETPIYKKSQVLYGIDQAKREIAKQGR----------VVVVEGYTDVMACHLAGVPTA 288 Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 V++ GTA + +L + ++ I+ FDGD G +AA +A + + R Sbjct: 289 VATCGTAFGGDHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFEDDQRFVG---R 345 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + DP G A L+ PLVD + +T D R E Sbjct: 346 TFIAVSPDNMDPCELRLAKGDLAVRDLVARREPLVDFALRHVISRFDLDTVDGRVEAMRR 405 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + +KDQ+ R Y + + L + P Sbjct: 406 AAPLVAKLKDQEKRPEYVRKLAGDLGMEIEPVQRAVLAAASG-----------RPMDTPA 454 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + + S+ E L + P + + + Y + + + + Sbjct: 455 RPARSEPSVDSPQSMVEREALKLALQEPVLAGPMFDAVEATDYRHPVHVVVRTAIAEAGG 514 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + + L V + + + Y + Sbjct: 515 AASATAGAVWVEAVRDACEDLAAQAL---VGELAVEPLRIDGEPDP---RYVSITMARLQ 568 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + ++ + +++ +I ++ ++ L + + Q A Sbjct: 569 WGSVTARIRDLKSRIQRINPVSNKDEYFATFGELLSLEQHARALREQAA 617 >gi|322613614|gb|EFY10555.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621207|gb|EFY18065.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624270|gb|EFY21104.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627992|gb|EFY24781.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633110|gb|EFY29852.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636313|gb|EFY33021.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643487|gb|EFY40049.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644794|gb|EFY41329.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648603|gb|EFY45050.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653655|gb|EFY49981.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657763|gb|EFY54031.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663864|gb|EFY60063.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669125|gb|EFY65276.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672882|gb|EFY68989.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678128|gb|EFY74191.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681304|gb|EFY77337.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687766|gb|EFY83733.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195578|gb|EFZ80755.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199741|gb|EFZ84831.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202511|gb|EFZ87551.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208001|gb|EFZ92947.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212447|gb|EFZ97264.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215071|gb|EFZ99819.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222801|gb|EGA07166.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224118|gb|EGA08411.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230442|gb|EGA14560.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235206|gb|EGA19292.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239247|gb|EGA23297.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244395|gb|EGA28401.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247012|gb|EGA30978.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253506|gb|EGA37335.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256188|gb|EGA39924.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262636|gb|EGA46192.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267268|gb|EGA50752.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269330|gb|EGA52785.1| DNA primase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 581 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 NIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|221314768|ref|ZP_03596573.1| DNA primase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|255767574|ref|NP_390400.2| DNA primase [Bacillus subtilis subsp. subtilis str. 168] gi|251757308|sp|P05096|PRIM_BACSU RecName: Full=DNA primase gi|225185202|emb|CAB14451.2| DNA primase [Bacillus subtilis subsp. subtilis str. 168] Length = 603 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 151/570 (26%), Positives = 265/570 (46%), Gaps = 26/570 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV+S + V+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSDVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA +L G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S + + K + K L + K +L Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +++++ + +++ +E + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + R+ + +LL + + L A Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552 >gi|153214932|ref|ZP_01949715.1| DNA primase [Vibrio cholerae 1587] gi|124115005|gb|EAY33825.1| DNA primase [Vibrio cholerae 1587] Length = 609 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 288/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 27 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + + K + Sbjct: 82 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPYSPFAKNTPAVKSED 141 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 370 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 429 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I I D L+ + + +R Q KK + ++ P + + ++ + Sbjct: 430 IEKIPDPFLQEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKVIKRTPM 479 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602 >gi|271963878|ref|YP_003338074.1| DNA primase [Streptosporangium roseum DSM 43021] gi|270507053|gb|ACZ85331.1| DNA primase [Streptosporangium roseum DSM 43021] Length = 616 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 154/645 (23%), Positives = 258/645 (40%), Gaps = 44/645 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + PI++++G+++ NA G+ CPFHDEK+PSF+ ++G+ Sbjct: 4 RISDEDIALVRERSPIADIVGEHIQL----RNAGGGNLKGLCPFHDEKSPSFNVTPTRGY 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 +YCF C GD ++F+ L SF E+V+RLA AG+ L +++ ++ LI Sbjct: 60 WYCFGCAEGGDVITFVRRLEHLSFGEAVERLANRAGIQLRYEQGGYVPGREQGERSRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L +L ERG + E F +GYAP +L HL +GF+ Sbjct: 120 AHRAAAEFYASKLSAPDAAIGRKFLSERGFERVDAEHFGVGYAPAEWEALARHLMARGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 ++I+ GL + DRFR RL++PIR G VI FG R L+ + KYLN+PE Sbjct: 180 SAELIKGGLAKE--GRRGPIDRFRGRLVWPIRDITGDVIGFGARKLNDAEDGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + L+ K + LY A + K S ++VEGY DV++ +GV V++ Sbjct: 238 SPLYKKSEVLYGVDLAKREISK----------RSQAVIVEGYTDVMACHLSGVPTAVATC 287 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E +++L + +V FDGD G +AA +A + + Sbjct: 288 GTAFGEEHIKVLRRLLLDQSGSQGEVVFTFDGDAAGQKAALRAFADEQKFVT---QTFVA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G+ A LI PL + +T + R Sbjct: 345 VQPDGLDPCDLRVRQGEAAVRDLIASREPLFAFAIRSMISRYDVSTNEGRLSALDAAAPI 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + IKD+ LR Y + L + + A P Q+ Sbjct: 405 VAGIKDRALRQLYGVDLDRWLG---------FNNERFVMDRIAEISATAQPRQQRPAGPR 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 L+ EA +L + PA+L + + + E L+ + Sbjct: 456 KVADLTDPGVRTEAEVLKLAVQRPALLGPGFDAIGPAAFTLPEHVALYKLVMDTGGTAAA 515 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +R G + L V + + + Y A+ + Sbjct: 516 GHG---GREWVDRLLGGVTDALRGVVTRFAVEELRADVASE---ERYASAMLAALELVSV 569 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R E+++ ++ + E ++ L L + Q ++ + A Sbjct: 570 VRAIEQLKSRMQRTNPVEEQQEYNRLFGELVALEQQRRVLKERAA 614 >gi|238910013|ref|ZP_04653850.1| DNA primase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 580 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 175/630 (27%), Positives = 293/630 (46%), Gaps = 57/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ ++ Q+ + Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQIKQTPM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P++ Q LA + L+ L+S L S V Q ++ Sbjct: 452 -----RILIGLLVQNPSLAPLVPPLQGLAQSKL--PGLR-LFSELVSLCVAQPGLNTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L SA + +V + + L +L ++ EE Sbjct: 504 LENYRGTSEYSTLEKL----------SAWNDIRDENVEKMFTDTLNRIFDA-MLEQRLEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T + +E+ I + + Sbjct: 553 LIAR--DRTHRLSSEERREYWEIRQALEKK 580 >gi|262172394|ref|ZP_06040072.1| DNA primase [Vibrio mimicus MB-451] gi|261893470|gb|EEY39456.1| DNA primase [Vibrio mimicus MB-451] Length = 587 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 60 HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFSKNTPTVKSEE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK ++ YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRSSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L+ E N + + ++ L Sbjct: 348 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L+ +P+ + + L +S + + + Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580 >gi|47567856|ref|ZP_00238564.1| DNA primase [Bacillus cereus G9241] gi|52141208|ref|YP_085622.1| DNA primase [Bacillus cereus E33L] gi|118479465|ref|YP_896616.1| DNA primase [Bacillus thuringiensis str. Al Hakam] gi|196039168|ref|ZP_03106474.1| DNA primase [Bacillus cereus NVH0597-99] gi|217961784|ref|YP_002340354.1| DNA primase [Bacillus cereus AH187] gi|218905430|ref|YP_002453264.1| DNA primase [Bacillus cereus AH820] gi|222097739|ref|YP_002531796.1| DNA primase [Bacillus cereus Q1] gi|225866274|ref|YP_002751652.1| DNA primase [Bacillus cereus 03BB102] gi|228916925|ref|ZP_04080487.1| DNA primase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228987543|ref|ZP_04147662.1| DNA primase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123832|ref|ZP_04253026.1| DNA primase [Bacillus cereus 95/8201] gi|229141031|ref|ZP_04269574.1| DNA primase [Bacillus cereus BDRD-ST26] gi|229157907|ref|ZP_04285981.1| DNA primase [Bacillus cereus ATCC 4342] gi|229186533|ref|ZP_04313695.1| DNA primase [Bacillus cereus BGSC 6E1] gi|229198420|ref|ZP_04325126.1| DNA primase [Bacillus cereus m1293] gi|301055786|ref|YP_003793997.1| DNA primase [Bacillus anthracis CI] gi|47555533|gb|EAL13876.1| DNA primase [Bacillus cereus G9241] gi|51974677|gb|AAU16227.1| DNA primase [Bacillus cereus E33L] gi|118418690|gb|ABK87109.1| DNA primase [Bacillus thuringiensis str. Al Hakam] gi|196029795|gb|EDX68396.1| DNA primase [Bacillus cereus NVH0597-99] gi|217067852|gb|ACJ82102.1| DNA primase [Bacillus cereus AH187] gi|218535323|gb|ACK87721.1| DNA primase [Bacillus cereus AH820] gi|221241797|gb|ACM14507.1| DNA primase [Bacillus cereus Q1] gi|225787966|gb|ACO28183.1| DNA primase [Bacillus cereus 03BB102] gi|228585120|gb|EEK43232.1| DNA primase [Bacillus cereus m1293] gi|228596964|gb|EEK54622.1| DNA primase [Bacillus cereus BGSC 6E1] gi|228625566|gb|EEK82319.1| DNA primase [Bacillus cereus ATCC 4342] gi|228642464|gb|EEK98752.1| DNA primase [Bacillus cereus BDRD-ST26] gi|228659653|gb|EEL15299.1| DNA primase [Bacillus cereus 95/8201] gi|228772275|gb|EEM20722.1| DNA primase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228842749|gb|EEM87835.1| DNA primase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300377955|gb|ADK06859.1| DNA primase [Bacillus cereus biovar anthracis str. CI] gi|324328198|gb|ADY23458.1| DNA primase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 598 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|62181727|ref|YP_218144.1| DNA primase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129360|gb|AAX67063.1| DNA biosynthesis; DNA primase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716213|gb|EFZ07784.1| DNA primase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 581 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSLPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|304322158|ref|YP_003855801.1| DNA primase [Parvularcula bermudensis HTCC2503] gi|303301060|gb|ADM10659.1| DNA primase [Parvularcula bermudensis HTCC2503] Length = 625 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 193/638 (30%), Positives = 300/638 (47%), Gaps = 35/638 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + F+ ++ + S++IG+ V + ++ PF EKTPSF ND KG Sbjct: 3 RFTPQFLDEIRARLRASDVIGRTVKLTKEGR-----EFRGLSPFTQEKTPSFFVNDEKGK 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++ FS GD + FL +F E+V LA +AG+ LP P+ E++ + + Sbjct: 58 FFDFSAGKSGDIIGFLMETQNLAFPEAVASLAELAGLDLPKSSPEEEERARSAKGVAEAN 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF L K YL++RG+ + A F LGYAP R +LR+ L +KGF Sbjct: 118 LEAAKFFREQLTRKPGKHALAYLEQRGVGAAARGAFGLGYAPGDRTALRDTLMEKGFDLS 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++AGL+I D+ YD+FR+R++FPI SRG+VIAFGGR LS+ S KY+NSPET+L Sbjct: 178 CLVDAGLVIRPDDG-EPYDKFRDRVMFPI-LSRGKVIAFGGRALSRSVSAKYMNSPETVL 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK LY + A L+ + ++L EGYMDV++L +AG V+ LGTA Sbjct: 236 FHKSATLYGYDRARKKLK----------DDTPLLLAEGYMDVIALDEAGYA-AVAPLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 +TE QL LLW++ V+C DGD G +AA++ ID L L PG + F L G+DPD Sbjct: 285 VTEAQLGLLWRVCDEPVVCLDGDRAGQKAAFRVIDRALPLLAPGKSLRFAFLPEGKDPDD 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G A +++ + PL ++LW ETE TP++ A HL++ + I+D +R Sbjct: 345 VLRGDGAKAMAQIVAAARPLAEVLWAHETEAHPQTTPEQVAGFRRHLRDRLAQIQDIDVR 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSG----------YGRYWKKNARHRDQKGPSQRLMQSSL 471 Y D+L+ G R + R P Sbjct: 405 RAYQHFFTDKLRAENGAAGPRTGGRPPAAGWRPEGARGRPSSGGFRPFAPPLSVSPALKA 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 V + ++ EA L+LTL+ HP++ + E+ + + L L L S VE + Sbjct: 465 VNLNRTDARTVTEALLVLTLVFHPSLFKTCEDEIFALELVDPNLSALLGHLVSFVVECET 524 Query: 532 FLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E + + +L R E + RQG+ AL+ ++ Sbjct: 525 LDRESLENHISRVEKHQLTFAHWRDHKRLRLERFLRPETDDDQARQGWLNALSKHRFDGE 584 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 L+ + +E + + + L + ++ Sbjct: 585 LAAEVDEAARSAYRTVDE------ERLWREVIRHRTRL 616 >gi|262164052|ref|ZP_06031791.1| DNA primase [Vibrio mimicus VM223] gi|262027580|gb|EEY46246.1| DNA primase [Vibrio mimicus VM223] Length = 587 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 168/633 (26%), Positives = 282/633 (44%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 60 HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFAKNTPTVKSEE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK ++ YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRNSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK E+ + + PL L+ E N + + ++ L Sbjct: 348 PDGEDPDSYVRKYGKADLEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L+ +P+ + + L +S + + + Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 504 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 554 EKQIENLQAK------ERSVGLSTEEKRELQDL 580 >gi|227817069|ref|YP_002817078.1| DNA primase [Bacillus anthracis str. CDC 684] gi|227002797|gb|ACP12540.1| DNA primase [Bacillus anthracis str. CDC 684] Length = 598 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 159/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L +++KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTLKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E ++ + R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEEVLQSHLET-----LRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|228935613|ref|ZP_04098428.1| DNA primase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824053|gb|EEM69870.1| DNA primase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 598 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 159/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAF L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFANLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|221310445|ref|ZP_03592292.1| DNA primase [Bacillus subtilis subsp. subtilis str. 168] gi|221319691|ref|ZP_03600985.1| DNA primase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323968|ref|ZP_03605262.1| DNA primase [Bacillus subtilis subsp. subtilis str. SMY] Length = 603 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 264/570 (46%), Gaps = 26/570 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV + + V+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVNTAVSSDVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA +L G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S + + K + K L + K +L Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +++++ + +++ +E + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + R+ + +LL + + L A Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552 >gi|326381693|ref|ZP_08203387.1| DNA primase [Gordonia neofelifaecis NRRL B-59395] gi|326199940|gb|EGD57120.1| DNA primase [Gordonia neofelifaecis NRRL B-59395] Length = 636 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/645 (21%), Positives = 242/645 (37%), Gaps = 33/645 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +++G YV R + + CPFHDEKTPSFH G Sbjct: 4 RIPDRDIAAIREQTRIEDIVGDYVTLRRAGADRLT----GLCPFHDEKTPSFHVRPHHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +FL L SF+E+V++LA G + K + L+ Sbjct: 60 FHCFGCGEGGDVYTFLQKLEHVSFVEAVEQLADRIGYTINYEGGGTAIKRDRGTRARLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A ++ L + +L ERG D +A F GYAP ++ + L ++GF Sbjct: 120 ANAAAQKYYAEQLATPDAQVARDFLTERGFDGNAAAHFGCGYAPAGWDTMTKALLKQGFQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++ AGL G DRF RL++PIR+ G VI FG R L ++ KY+N+PE Sbjct: 180 FSELEAAGLSKQGRK--GPIDRFHRRLLWPIRNLGGDVIGFGARKLFDDDNLGKYMNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K + L+ A + K +++VEGY DV+++ QAGV V+S Sbjct: 238 TMLYKKSQVLFGLDLAKRDIAK----------GHQVVIVEGYTDVMAMHQAGVTTAVASC 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLLS 354 GTA E L L+ +L L + + Sbjct: 288 GTAFGEDHLALIRRLMMDDSYFRGEVIYTFDGDAAGQAAALKAFEGEQSIAGQTFVAVAP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP + G A LI +P+ K ++ +T + R + Sbjct: 348 DGMDPCELRQRSGDPAVRDLIARRIPMFQFAIKTLIAQQNLDTAEGRVAALRETVPVVAR 407 Query: 415 IKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 I+D LR Y++ + + Q+ + + YGR ++R + + + + Sbjct: 408 IRDVALRDEYARQLAGWVGWDDVAQVLSRVRGDAKRYGRGKGGHSRQQSTRNRPEAMSAP 467 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + + L + +PAI + L + + + + + Sbjct: 468 PTARPLPNDPRLWPQREALKAALQYPAIAGTVFDSLPGECFTDPSYLAIRESIAAAGGAA 527 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + V + + E D Y ++ + Sbjct: 528 SGLGGAAWVDAVHNGVVDDPA--VAPLVTELAVEPLPVE---DDRVPQYISSVLARSQEI 582 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + Q +I+ ++ +++ + + L L + + Q Sbjct: 583 WVGSQIADIKSKLRRMSPGNDPDGYNALFGDLVALEAYRRSLLEQ 627 >gi|297199502|ref|ZP_06916899.1| DNA primase [Streptomyces sviceus ATCC 29083] gi|197712951|gb|EDY56985.1| DNA primase [Streptomyces sviceus ATCC 29083] Length = 635 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 148/656 (22%), Positives = 268/656 (40%), Gaps = 46/656 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F ESV+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKVDHLTFSESVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A D++ L + +L ERG D A F +GY+P L +LR KGF Sbjct: 120 AHKIAADWYMEQLATSPEADTGRQFLAERGFDQAAAAHFSVGYSPQGWDHLTRYLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 S+++I+ +GL + DRFR RL++PIR G V+ FG R L + KYLN+P Sbjct: 180 SDKEILLSGLAQE--GRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGTDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVVRYDLDTPAGRAAALDEAAPIV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK+ ++ + + L L +++ + W ++ + + Q S Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGKGPAPSGRGPQQPSYD 464 Query: 473 KGKLSKKPSLR----------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 E LL + P ++ + + + + Sbjct: 465 GAHRPAVSGPALTLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPPYAAVRQAI 524 Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 E ++ R+ E + ++ + ++ + T + + Y Sbjct: 525 MDAGGAEYGVQDSQDYLVRVREAAPDDAVRAMVTELAVEAIMRKTVD-------ENYAGD 577 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R R + R+ +EI+ + ++ + G+ A + + L + + + A Sbjct: 578 QLVTVRRRAVDRRIQEIQGTLIRLGSGGDPAHLAAVQNELWVLQQYGQALRERGAA 633 >gi|163742973|ref|ZP_02150356.1| DNA primase [Phaeobacter gallaeciensis 2.10] gi|161383656|gb|EDQ08042.1| DNA primase [Phaeobacter gallaeciensis 2.10] Length = 749 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 178/448 (39%), Positives = 270/448 (60%), Gaps = 10/448 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L + ++ ++G+ V WD+RK+N KGD WA CPFH EK+ SFH +D KG Sbjct: 1 MSLPPGFLDELRTRVSLTQVVGRKVMWDQRKSNQGKGDMWAPCPFHHEKSASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD L F+ F+E+VQ LA AG+ +P DP+ ++K+ + L + Sbjct: 61 FYYCFGCHAKGDALKFVQETENVGFMEAVQILAQEAGMEMPARDPRAQQKQDHRAQLAEV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF L + YL RG+ A+E +++G+AP+ +L + LR KG E Sbjct: 121 MEQAVRFFRLQLNTRAGEGARSYLARRGLSGPALERWEIGFAPEGWQNLWDALRGKGVPE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL + YD FRNR++FPIR +RG+ IAFGGR + ++ KYLNSPET Sbjct: 181 ELIMGAGLAKPSNKGGKPYDTFRNRIMFPIRDARGRAIAFGGRAMDPRDNAKYLNSPETA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG++LYN A KS +++ EGYMDV++L + G + V+ LGT Sbjct: 241 LFDKGRSLYNHGPARTASGKS----------GQLLVAEGYMDVIALAEGGFEASVAPLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+TE QL++LW+++ ++ DGD GLRAA + IDL L L G + F L+ +DPD Sbjct: 291 AITENQLQMLWRIADEPIIALDGDTAGLRAAMRLIDLALPLLEAGKSLRFALMPEDKDPD 350 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR G+ A + ++ +++P+V +LW+RETE + F++P+ +A L+ L++ I I+D + Sbjct: 351 DLIRAEGREAVQAVLDQAMPMVRLLWQRETEGKVFDSPERKAALDKALRDKIRLIRDPSI 410 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGR 448 R +Y + ++D +LF+ G Sbjct: 411 RRHYGEDLQDLRWELFRGGRPREEAAGS 438 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 21/224 (9%) Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQ--RLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + SG R + P S L G +REA +L T+I PA+ Sbjct: 527 KSRKSGGFRDGTRMPWRGKNAPPQPLETTRNSLLAGGSEESLARVREAVILATVITTPAV 586 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + L + ++ L + ++ L EEI L + Sbjct: 587 VAKYEVNLERMACIGSDHALLRDLVLRHGIDAPERLKEEIAAAAGAHALENLFALRHVAI 646 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------------AQ 604 E + + + + + A R L + E E+ + Sbjct: 647 SPCLRRPGDVEVASLTLAEEFAKLEAS----RGLDAELAEAEEDLDGLADEAVTWRLGQA 702 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 A+ +A ++ ++V ++ +E + FG + R+ Sbjct: 703 AEARNKAVRSENEDRAQYDVGENGARLNREER--DAFGALLERI 744 >gi|144897246|emb|CAM74110.1| DNA primase [Magnetospirillum gryphiswaldense MSR-1] Length = 486 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 170/492 (34%), Positives = 255/492 (51%), Gaps = 19/492 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ +L + ++ + V ++ ++ CPFH+EK+PSF N+ KG Sbjct: 1 MAFPPQFLDELRARASLVGVVARRVKLTKKGR-----EFQGLCPFHNEKSPSFTVNEEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CF C GD + F SF E+V+RLA+ G+ +P P+ + E + L Sbjct: 56 FFHCFGCGAHGDAIGFEMRAHHLSFTEAVERLASECGLEVPKATPEERRVEARRASLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ + YL RG+ I F+LG++PDSR +L+ L E Sbjct: 116 MESACQFYEKHLRGPAGREGLAYLRGRGLSDDTIARFRLGWSPDSREALKTALMSDACPE 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++IE GLL DN S+D FR R++FP+ RG+VIAFG RTL KYLNSP+T Sbjct: 176 AQLIEVGLLKKPDNGGASFDFFRGRVMFPVTDRRGRVIAFGARTL-GDGQPKYLNSPDTP 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG LY A + + ++ EGYMDV++L QAG V+ LGT Sbjct: 235 LFHKGATLYGLAIARETAR----------ERNVVMAAEGYMDVIALHQAGFTFAVAPLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ +W+L+ +LCFDGD+ G RA +A + L PG + F L EDPD Sbjct: 285 ALTEAQIEEMWRLADEPILCFDGDNAGQRAMARAAERGLPICKPGKSLRFATLPAPEDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S I+ G A + ++ + PLVD++W+ T+NR +TP+ RA LE LK+ I D+ + Sbjct: 345 SLIKAKGPAAMQAVLDAAQPLVDVVWRLSTDNRPTDTPERRAALEKELKDKAFAITDETV 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLVKGKLS 477 R+ Y RD+++ L + G G + + R R P R + L + + Sbjct: 405 RWQYLSVFRDKMRALTRPAWVPSQGKGGFGGQGRRADFKRRPGDPPLRGPRRPLPGARKA 464 Query: 478 KKPSLREAALLL 489 P + E + Sbjct: 465 PPPQVDERGVAA 476 >gi|304396866|ref|ZP_07378746.1| DNA primase [Pantoea sp. aB] gi|304355662|gb|EFM20029.1| DNA primase [Pantoea sp. aB] Length = 581 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 172/598 (28%), Positives = 280/598 (46%), Gaps = 42/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATSHGLDVPYEAGSGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ L+ + + YLD RG+ + I F +GYAP ++ + ++ Sbjct: 119 LMENLNGFYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAG+L+ D +YDRFR+R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A+ + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 PIFHKGRQLYGLYEAVKNHPEPAR----------LLVVEGYMDVVALAQYGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ ++ D +A L I I + Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + P +R Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKL----MPKQAASGTAPVAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ LI +P + L L+ L E ++ + Sbjct: 452 -----RVLIALLIQNPQLATMVPSLDGLSESKMPGL-PLFIELVGRCNENPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 F + L+ L + + + EA D A + L++R++ + Sbjct: 506 LYRGTNFSQTLETLA--IWNHMIVDEEAEAVFQDSLASIYDAALEERLEFLIARERTQ 561 >gi|258623777|ref|ZP_05718734.1| DNA primase [Vibrio mimicus VM603] gi|258583900|gb|EEW08692.1| DNA primase [Vibrio mimicus VM603] Length = 591 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 9 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 64 HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFTKNTPTVKSEE 123 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK ++ YL RG+ ++ F +GY D +R + Sbjct: 124 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 183 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 184 GQQRNSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 241 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 242 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 291 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 292 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 351 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L+ E N + + ++ L Sbjct: 352 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 411 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 412 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L+ +P+ + + L +S + + + Sbjct: 462 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 507 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 508 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 557 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 558 EKQIENLQAK------ERSVGLSTEEKRELQDL 584 >gi|229525181|ref|ZP_04414586.1| DNA primase [Vibrio cholerae bv. albensis VL426] gi|229338762|gb|EEO03779.1| DNA primase [Vibrio cholerae bv. albensis VL426] Length = 601 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 290/633 (45%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 19 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 74 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 134 KRSLYDLMGSIAQFYRQQLKIPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 251 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 252 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 301 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 302 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGREAAWRALENALSYLKSGNILKFLFL 361 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L++ E N + + ++ L Sbjct: 362 PDGEDPDSYVRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPL 421 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ +++ +R Q KK + ++ P + + ++ + Sbjct: 422 IDKIPDPFLQEVLEKSLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM 471 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 472 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 517 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 518 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 567 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 568 EKQIENLQAK------ERSVGLSTEEKRELQDL 594 >gi|161506226|ref|YP_001573338.1| DNA primase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867573|gb|ABX24196.1| hypothetical protein SARI_04419 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 580 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 294/630 (46%), Gaps = 57/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LLNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F+ A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGFYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ ++ Q+ + Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGLSRPAPQIKQTPM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P++ Q LA + L+ L+S L S V Q ++ Sbjct: 452 -----RILIGLLVQNPSLAPLVPPLQGLAQSKL--PGLR-LFSELVSLCVAQPGLNTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L SA + +V + + L +L ++ EE Sbjct: 504 LENYRGTSEYSTLEKL----------SAWNDIRDENVEKMFTDTLNRIFDA-MLEQRLEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T + +E+ I + + Sbjct: 553 LIAR--DRTHRLSSEERREYWEIRQALEKK 580 >gi|158522164|ref|YP_001530034.1| DNA primase [Desulfococcus oleovorans Hxd3] gi|158510990|gb|ABW67957.1| DNA primase [Desulfococcus oleovorans Hxd3] Length = 613 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 151/646 (23%), Positives = 269/646 (41%), Gaps = 41/646 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P D I ++ I +++ + V + N Y CPFH EKTPSF + K Sbjct: 1 MYIPDDIIANIKNSADIVDIVSEVVRLKKTGKN-----YLGLCPFHSEKTPSFTVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118 ++CF C G +FL G F E+V LA G+ LP + + + + L+ Sbjct: 56 MFHCFGCGEGGSVFTFLMKHQGLGFPEAVALLAKRCGIALPRPEKGSREAKDVSERQRLL 115 Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +++ A F+H L+ +R Y+ ERG+ + F+LGYAP +L L + Sbjct: 116 SVMQRAAAFYHSCLREGPGGERATRYMAERGLSDDMVRDFQLGYAPGGWDALTRFLSKHK 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +AGL++ + YDRFRNR+IFPI G+VIA GGR + KYLNSP Sbjct: 176 IPMPLAEQAGLVVLNREGSGYYDRFRNRIIFPITDLTGRVIALGGRVM-DDTLPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ K +LY + + + + EGYMD LSL + G++NVV++ Sbjct: 235 ETPLYSKSNSLYGLSHTKQMCR----------QAGTVYITEGYMDFLSLYRHGIKNVVAT 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTALT LR+L + VL FD D G++AA ++I++ G + ++L G Sbjct: 285 LGTALTAEHLRMLKGFVTKAVLVFDSDAAGIKAAQRSIEIFNGE--KGIQPFILVLPTGH 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD+++R G FE L ++ + L + + + + + L+ + ++D Sbjct: 343 DPDTYVRENGAQDFEALARKAGGAMSFLLESAVNR-HGLSLEGKIRVMSDLEESLAAVED 401 Query: 418 QKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R Y + + +RL + +K + + + S + Sbjct: 402 GVARSLYVKEVSERLGIEESAVLEKVRQAAARRRSRSARPSLFTVDTSASGGDQRKEETT 461 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + E LL +++ P ++ E + + L+ + + L + + Sbjct: 462 ASVFGRSLRMERQLLSMMLHVPEMISEIESRNVLSLFADERLKTIGTLLVTHRRALENRS 521 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + + E L+++ + E + + + R Sbjct: 522 VD-----IVDVVPDESLQRIVSALCVGDELCMWNETGCRKLIGQFVDSR---------LR 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMI 638 + + +I + + L+ E V ++ + E+ + Sbjct: 568 HVDTLSHRIKAAEENRDGDLLDHLLKAKQEQVRNKLTIEQKGESAL 613 >gi|196046384|ref|ZP_03113610.1| DNA primase [Bacillus cereus 03BB108] gi|196022854|gb|EDX61535.1| DNA primase [Bacillus cereus 03BB108] Length = 598 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPNKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|323704676|ref|ZP_08116254.1| DNA primase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536138|gb|EGB25911.1| DNA primase [Thermoanaerobacterium xylanolyticum LX-11] Length = 598 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 156/635 (24%), Positives = 298/635 (46%), Gaps = 40/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+Y +D I ++ I +++ YV + D+ CPFH EKTPSF+ + K Sbjct: 1 MSYSKDVIDRVIEENDIVDVVSSYVSLKKSGK-----DFKGLCPFHHEKTPSFNVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 Y+CF C G+ ++F+ + F E+V+ LA AG+ + +K+K++ ++ Sbjct: 56 LYHCFGCQASGNVITFVMNIENVGFKEAVEFLADRAGIEIEEENLSGLEYQKKKLKDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A F+H L + + YL +RGID I+ F LG++P S L ++L+++ + Sbjct: 116 EVNRLAALFYHRYLYSKFGQAALKYLYDRGIDDITIKRFGLGFSPPSGLELLKYLKRRNY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + ++ AGL+ ++ + YDRF+NR++FPI + VI FGGR + KYLN+PE Sbjct: 176 NTDVLVSAGLVSKS-STGSYYDRFKNRVMFPIIDEKNNVIGFGGRVM-DDAKPKYLNTPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F KGK LY A I+VEGYMD ++L Q+G+ NVV+SL Sbjct: 234 TVVFKKGKTLYGINYAKKS------------KEDMFIIVEGYMDAIALYQSGLDNVVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RL+ K +V+ +D D+ G+ A + ++L+ + VN + + G+D Sbjct: 282 GTALTLEQGRLIKKYKNTVVISYDADEAGIEATMRGLNLLDELDL---NVNILTVPNGKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++R G AF+KL+ ++ L++ K+ ++ P +R + + + +KD+ Sbjct: 339 PDEYVRKEGFDAFKKLLEKTDTLIEYKIKKYKQDLDLEKPSDRIKYIKKVCKDLATVKDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + + + E + + + +N + + R K+ Sbjct: 399 VKRDVYISIVSEDAEIPENTIRAEIDQFVKGFLQNNKKIRYTVGNNRHNIKYSGAKKIPS 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ + +L+ ++ L+ + S++F + + +++ Sbjct: 459 L-----KYLIALLLIDNKLYSRVKGKLSVDDIEDEHLKAVMSYIFERLEDGGHVDVKDLS 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + + + + A+ + VR+ + + R+ I Sbjct: 514 FMLDNADLKDEFNDIFNVLYSEKV--ASEKIVDDCVREIIKDDIR---------RKIASI 562 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +++I G+ EK L+ L + ++ +++ Sbjct: 563 KREIDDSYNAGDIEKERELLIQLQKYEKEMLNLKN 597 >gi|262042264|ref|ZP_06015429.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040328|gb|EEW41434.1| DNA primase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 581 Score = 373 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 180/629 (28%), Positives = 297/629 (47%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFISDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPYEAGNGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL YL +RG+ S I F +GYAP ++ + + Sbjct: 119 LLDGLNAFYQQSLMQLAADPARQYLAKRGLSSEVITRFAIGYAPPGWDNVLKRFGGNQEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNPEPPR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++++ ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRVTNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ +TPD RA+L I + + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSTPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + P+ +L ++++ Sbjct: 407 LRIYLRQELGNKLGILDDAQLERL-------MPKQAENGAPRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+S L + Q ++ + Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLEGLDSRKMPGL-SLFSELVKSCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L++L +W + +I Q + +L + LL ++EE+ Sbjct: 506 QYRGTKEAATLEKL-------SMWDDIADKDI--AEQTFTDSLN-HMFDSLLELRQEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA+ G +E+ L +I E+ + Sbjct: 555 --IARDRTHGLSSEERRELWTISQELAKK 581 >gi|198242235|ref|YP_002217191.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197936751|gb|ACH74084.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326624967|gb|EGE31312.1| DNA primase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 581 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 173/631 (27%), Positives = 293/631 (46%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 347 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQTLGLKLGIFDDSQLDHLV-------PKQAESGVSRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + I + + +L + LL ++EE Sbjct: 504 LELYRGTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ L ++ E+ + Sbjct: 554 L---IARDRTHGLSSEERRELWTLNQELARK 581 >gi|9910841|sp|Q9X4D0|PRIM_BACST RecName: Full=DNA primase gi|4416324|gb|AAD20315.1| DNA primase [Geobacillus stearothermophilus] Length = 597 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 267/632 (42%), Gaps = 46/632 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++IG+YV R+ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 ++CF C G+ +FL + G F+E+ +RLAA AGV L V + + + + + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYELDVRGRDDGQTDEAKAM 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + F+HH L + YL RG I+ F++GYAPD+ + + L Sbjct: 119 TEAHALLKRFYHHLLVHTKEGQAALDYLQARGWTKETIDRFEIGYAPDAPDAAAKLLESH 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 FS + +AGLL RFRNR++FPI RG+ + F GR L +G KY+NS Sbjct: 179 SFSLPVMEKAGLLTKK-EDGRYVGRFRNRIMFPIHDHRGETVGFSGRLLGEG-HPKYVNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY+F A ++K +LVEG+ DV+S QAG+ ++ Sbjct: 237 PETPVFRKGAILYHFHAARVPIRK----------RQEALLVEGFADVISAAQAGIDYAIA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LTE Q R+L I +C+DGD G+ AA+ A + G RV L G Sbjct: 287 TMGTSLTEEQARILRP-CDTITICYDGDRAGIEAAWAAAE---QLSALGCRVKVASLPNG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR YG F PLV ++ ER I + Sbjct: 343 LDPDEYIRVYGGERFAGEAGCRRPLVAFKMAYLRRGKNLQHEGERLRYIDEALREIGKLS 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + YY + + + + S R K + ++ KL Sbjct: 403 SPVEQDYYLRQLAEEFSLSLSALHEQLSRSQRERTK------PREAPDGETARPMLAKKL 456 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ + + + R++ E + L +++++ + E P Sbjct: 457 LPAFQNAERLLLAHMMRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHEADPGA 515 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + R+ +L D L + + ++ + L R + L + + Sbjct: 516 LISRIPG--------ELQPLASDVSLLLIADDVSEQELEDYIRHVLN---RPKWLMLKVK 564 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E EK + + + A + + E+ + Sbjct: 565 EQEK--TEAERRKDFLTAARIAKEMIEMKKML 594 >gi|258623541|ref|ZP_05718542.1| DNA primase [Vibrio mimicus VM573] gi|258584203|gb|EEW08951.1| DNA primase [Vibrio mimicus VM573] Length = 591 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 283/633 (44%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 9 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 64 HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTIGLEVVREERTPSSPFSKNTPTVKSEE 123 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK ++ YL RG+ ++ F +GY D +R + Sbjct: 124 KRSLYDLMGSIAQFYRQQLKQPNNRHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 183 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 184 GQQRSSEDMLVTAGMLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 241 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 242 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 291 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 292 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 351 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L+ E N + + ++ L Sbjct: 352 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 411 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 412 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L+ +P+ + + L +S + + + Sbjct: 462 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 507 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 508 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 557 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 558 EKQIENLQAK------ERSVGLSTEEKRELQDL 584 >gi|228948007|ref|ZP_04110293.1| DNA primase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811697|gb|EEM58032.1| DNA primase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 598 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 274/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKQMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I +I Q+ E ++ L + Sbjct: 568 IIFKIKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|254291202|ref|ZP_04961998.1| DNA primase [Vibrio cholerae AM-19226] gi|150422896|gb|EDN14847.1| DNA primase [Vibrio cholerae AM-19226] Length = 609 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 282/633 (44%), Gaps = 68/633 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 27 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 81 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 82 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 141 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 142 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 201 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 202 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 259 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L ++ I++VEGYMDV++L Q GV Sbjct: 260 LNSPETPIFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDY 309 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ L Sbjct: 310 SVASLGTSTTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 369 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L+ E N + + ++ L Sbjct: 370 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRAVATPL 429 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 430 IDKIPDPFLQEVLEKLLDERTG--FDHQLRRKKARNTENRPAPHKAIKRTPM-------- 479 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ LI +P+ + + L +S + + + Sbjct: 480 -------------RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + + LL +L + E + + + Q + Sbjct: 526 ITTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 576 EKQIENLQAK------ERSVGLSTEEKRELQDL 602 >gi|40142|emb|CAA27537.1| unnamed protein product [Bacillus subtilis] gi|142865|gb|AAA22406.1| DNA primase [Bacillus subtilis] gi|1303832|dbj|BAA12488.1| DnaE [Bacillus subtilis] Length = 603 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 150/570 (26%), Positives = 264/570 (46%), Gaps = 26/570 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELINEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV + + V+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVYTAVSSDVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA +L G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASEL---LQKKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + S + + K + K L + K +L Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNSGETKTRRAHLTTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +++++ + +++ +E + L ++L++ + E P+ Sbjct: 464 RPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTPQH 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + R+ + +LL + + L A Sbjct: 523 LMARVTDDHISQLLSDILMLQVNQELSEAE 552 >gi|331082070|ref|ZP_08331198.1| hypothetical protein HMPREF0992_00122 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405665|gb|EGG85195.1| hypothetical protein HMPREF0992_00122 [Lachnospiraceae bacterium 6_1_63FAA] Length = 594 Score = 372 bits (955), Expect = e-100, Method: Composition-based stats. Identities = 155/614 (25%), Positives = 265/614 (43%), Gaps = 44/614 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I ++I YV R+ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSDDLIEEVRSKNDIVDVISDYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AGV LP + + ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKYLADRAGVQLPEVEYSKEAKAASDFKSMLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A F+++ LK K YL R + I+ F LG +P +L ++L+ +G+ Sbjct: 116 EIQKKAASFYYYQLKQESGKPALDYLKGRQLSEDTIKKFGLGCSPRYSGALYQYLKGQGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E + E+GL D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 SDELLKESGLFNID-ERRGMQDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + + I+ EGYMDV+++ QAG N V+SL Sbjct: 234 TKIFDKSRNLYGLNIAR------------TSRKPYFIICEGYMDVIAMYQAGFHNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + ++L +D D+ G +AA + I + G V L+ +D Sbjct: 282 GTALTSGHASLMSRYTKEVLLTYDSDEAGQKAALRGIPI---LKAAGISPRVVNLAPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ GK AFEK + E+ K + + P+ + + + + ++ Sbjct: 339 PDEFIKAEGKEAFEKRLEEAENYFLFEIKVLEKQYHLSDPESKTQFYREIARKLLEFPEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y ++I R Q F+ + A R S K Sbjct: 399 LERNNYIESISARYQIKFEDLRRMVNNMALSGTGVAVK-------PRTEAVSKKKEGKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L ++P++ + + + K+ +F E P ++ Sbjct: 452 AGHTAQKLMLTWLSSYPSMFKTIDGLIEPADFTTPLYHKVAEIVFEQHKEG-EVNPAKLL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------------YK 586 R + + + L +A + V + + ++A + Sbjct: 511 NRFSDAEEQKEITSLFHASLHLESEEDAKKAVLETVCRLKRDSIAWQSTNLPPTDLFGLQ 570 Query: 587 RFRLLSRQKEEIEK 600 R ++ E++E+ Sbjct: 571 RIVEARKRLEDLER 584 >gi|269137813|ref|YP_003294513.1| DNA primase [Edwardsiella tarda EIB202] gi|267983473|gb|ACY83302.1| DNA primase [Edwardsiella tarda EIB202] gi|304557868|gb|ADM40532.1| DNA primase [Edwardsiella tarda FL6-60] Length = 582 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 178/624 (28%), Positives = 288/624 (46%), Gaps = 53/624 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I L+ V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVELVDARVKLKKQGKN-----YHACCPFHSEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA +AG+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATMAGLEVPYESGSGPSQMERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ ++ SL+ + YL RG+ ++ F +GYAP + + + Sbjct: 119 LMDSLCGYYQQSLRQPGATQAQQYLTGRGMSQAIMDRFAIGYAPQGWDNALKRFGRDAGG 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ + + SYDRFR+R++ PIR RG+VIAFGGR L G + KYLNSPET Sbjct: 179 RTALNDAGMLV-NNENGRSYDRFRDRIMIPIRDKRGRVIAFGGRVLGNG-TPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + AL + + R +++VEGYMDV++L Q GV V+SLG Sbjct: 237 EIFHKGRQLFGLYEALQHAAQPER----------LLVVEGYMDVIALAQYGVNYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD+ G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRHTDSVVCCYDGDNAGREAAWRALETALPYLSDGRQLKFMFLPEGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR G AFE+ + ++ PL L+ +TPD RA+L I + + Sbjct: 347 DTLIRQEGAEAFERRMNDAHPLSAFLFDSLLPQVDLSTPDGRAKLSALALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q++ +L L + + KN + K + Sbjct: 407 LRLYLRQSLGQKLGILDDSQLEKLLPRRSEAVKNYQPPRLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +PA+ E ++ L L+ L + Q ++ + Sbjct: 452 -----RILIALLVQNPALAAEVPTLDGLRQHPLPGL-PLFIELVETCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L+ L + E + + Y L + +E Sbjct: 506 LYRDNKYASQLETLATW-NHMIIEPMVLETFVDTLGSLYDAVLE------------QRLE 552 Query: 600 KQIAQVTAKGEAEKTAILISILHE 623 + IA+ G + L+E Sbjct: 553 QLIARARTDGLTPAEREEVRSLNE 576 >gi|300933209|ref|ZP_07148465.1| DNA primase [Corynebacterium resistens DSM 45100] Length = 649 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 136/661 (20%), Positives = 259/661 (39%), Gaps = 50/661 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I+ + PI ++G+YV PF DEKTPSFH +KG+ Sbjct: 8 RIPQADIEAIRERTPIEEVVGEYVQLKPAG----VDSLKGLSPFKDEKTPSFHVRPNKGY 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 ++CFS GD SFL + +F E+V++ A G + K+E+ + L+ Sbjct: 64 FHCFSSGEGGDVFSFLMKMEHVTFPEAVEQCAERIGYQIRYEGGGPGKREEPGNRQRLVA 123 Query: 120 LIEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A +F+ + + +L ERG + F G+AP +L +HL +KG Sbjct: 124 ANKAAHEFYREQFHSDIEGAEVAREFLLERGFQMEHADYFGCGFAPAGWDTLTKHLLRKG 183 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F+ +++ AGL DRF RL++PI++ G VI FG R L + KY+N+ Sbjct: 184 FNFKELEAAGLSR--MGQKGPIDRFHRRLLWPIKNVAGDVIGFGARKLFDDDKLGKYMNT 241 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K K L+ A + SS ++VEGY DV+++ AGV+ V+ Sbjct: 242 PETLLYKKSKVLFGIDHAKRNIA----------SSHQAVVVEGYTDVMAMHAAGVKTAVA 291 Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 + GTA L++L + I+ FDGD+ G +A +A + R Sbjct: 292 ACGTAFGADHLQMLRRFMLDDKFFRGEIIYTFDGDEAGQKAVMRAFEGDQQFTG---RSY 348 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G DP G A +L+ +P+ + + + E+ + D R + Sbjct: 349 VTIAPGGMDPCDIRMDKGDAAVRELVASRIPMFEFVIRALLEDYDTASVDGRVHALRRIV 408 Query: 410 NCINHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I+D+ +R Y++ + + + + R + K + R + Sbjct: 409 PVLAGIRDEAMRDEYARQASGWVGWEDPADVVNQVREEARKGHVEKPKLELKKGAAREER 468 Query: 469 SSLVKGKLSKKPSLRE------------AALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + + E +L + P + E + + + + + Sbjct: 469 QASTPAPELRAVETMERPDPNEDYLEGPREVLKIALQEPQLAGEMFDLMPPVSFSHPTYI 528 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + + L+ + L + + Sbjct: 529 AIAQAMEKAGGAAQAKGGAAWIDHVAS-----LIGDAMGAAVVSELAVEDMHCQAGRL-K 582 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 Y A+ + + R + + E++ ++ ++ + E+ L + L + ++++ A Sbjct: 583 YYADAIMAHMQERWVGNEIAEMKSKMQRMRPDLQQEEYKALFADLMALEKYRRSLQARAA 642 Query: 637 M 637 Sbjct: 643 A 643 >gi|194333429|ref|YP_002015289.1| DNA primase [Prosthecochloris aestuarii DSM 271] gi|194311247|gb|ACF45642.1| DNA primase [Prosthecochloris aestuarii DSM 271] Length = 632 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 169/649 (26%), Positives = 274/649 (42%), Gaps = 39/649 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I ++ I I ++I YV N Y A PF EKTPSF + K Y Sbjct: 2 IPQQKIDEIRQSIDIVDIIADYVKLQPSGRN-----YKALSPFTAEKTPSFVVSPDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ +FL + SF E+++ +A AG+ + + +++ + ++ Sbjct: 57 KCFSSGKGGNVFTFLMEVEKISFPEAIEVVAKRAGIDISQYRHTSQDRDQKHNNEYDTLK 116 Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A ++ L + K +Y ++ER + I F +GYAPDS L + E Sbjct: 117 WAGRLYNRQLHSPSGKEGLHYLVNERKLSQKTIMTFGVGYAPDSWDFLTGEAGRSAIPVE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 + GLL +SYD FRNR++FPI S GQVI FGGRTLS S KYLNSPET Sbjct: 177 SLSLTGLLYHNARKNSSYDYFRNRIMFPIFSVAGQVIGFGGRTLSSDPNSPKYLNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F K K LY A N +++ + ILVEGYMDVL+L QAG+ V+S GT Sbjct: 237 FFDKSKVLYGLHAARNEIRR----------NGQAILVEGYMDVLALHQAGITTAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+YQ +L + ++ +D DD G ++ ID+ + G L G+DPD Sbjct: 287 ALTKYQAAILQRYCSEVLFLYDADDAGQKSMLSGIDI---LVSSGLTPWTATLPEGDDPD 343 Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SFIR GK AF I E+ +D + + N P +A + I+ ++D Sbjct: 344 SFIRKQGKEAFLDYIKENRLSFIDFQLAFHLKKGAMNEPRNKAIAVRSMLKTIHLVQDSM 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y Q + +L K+ + + + L + Sbjct: 404 QKELYLQELEQKLGISMAVLREIMLQMRAGQKQATQKPAPQHSGTDSEEPGL-------R 456 Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDF-----VEQK 530 S++E L L+ E + + ++ N + + L + + Sbjct: 457 ISVQEKTFLKALLESVEYGNEVLEFASSHQELLQLSNPAATTVLTHLLNSYRNSIAHSGA 516 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + + L L + W A+ + ++ L +K + Sbjct: 517 HLDVAAEIGSIEDADARGLASGLLIDPPVSAHWQASFDEEQQKAKRCLTAFLDSFKHL-I 575 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMI 638 L+ +++ I+++ + E+ L S L + + + E++ AMI Sbjct: 576 LNHFRQQKTNLISRLRSAANLEEEKSLSSDLALLVREEQKTENEVNAMI 624 >gi|317493717|ref|ZP_07952134.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918044|gb|EFV39386.1| DNA primase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 582 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 172/630 (27%), Positives = 294/630 (46%), Gaps = 56/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +L+ V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLVDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ESV+ LA +AG+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESVEELATMAGLEIPYEAGTGPSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ +DF+ +L+ + YL +RG+ I+ F +GYAP + + + S Sbjct: 119 LMDGLSDFYQQALRQPSSQSAQQYLMQRGLSQEIIDHFAIGYAPAGWDNALKRFGRDPAS 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ + + +YDRFR+R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RTALNDAGMLV-NNENGRTYDRFRDRVMFPIRDRRGRVIAFGGRIL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLFGLYEAQQRHPELAR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++L+++ + +V C+DGD+ G AA++A++ L L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLMFRTTDTVVCCYDGDNAGREAAWRALETALPFLSDGRQLKFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G AFE+ I ++ PL L+ +TPD R +L I I + Sbjct: 347 DTLVRKEGTAAFEQRIEQAQPLSAFLFDTLMPQVDLSTPDGRTKLSALALPLIGQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + + K + Sbjct: 407 LRLYLRQFLGQKLGILDDSQLEKLLPRQAETGNSYQQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P++ E + L + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPSLAAEVPTLEGLREHPLPGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + + L+ L + + + + Y +L +++EE Sbjct: 504 IELYRDNKYAQQLETLATW-NHMVVEDMVHQTFVDTLGSLYDS---------MLEQRQEE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + A++ L ++ + + Sbjct: 554 LI-ALDRTQGL-NADQRRELWALNQALAKK 581 >gi|157372532|ref|YP_001480521.1| DNA primase [Serratia proteamaculans 568] gi|157324296|gb|ABV43393.1| DNA primase [Serratia proteamaculans 568] Length = 582 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 175/630 (27%), Positives = 284/630 (45%), Gaps = 53/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGSGPTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SL YL +RG+ I F +G+AP + + + S Sbjct: 119 LMEQLSSFYQQSLHQPSGAPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADS 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ SYDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RSALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EVFHKGRQLYGLYEAQQNHPTPQR----------LLVVEGYMDVVALAQYGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + + PL L++ ++PD RA+L I + + Sbjct: 347 DTLVRKEGKEAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + K + Sbjct: 407 LRLYLRQQLGSKLGLLDDSQLDKLMPKQAENANTYQAPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L + L+ L + Q ++ + Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + + L+ L + + E +D ++ L ++ E + Sbjct: 506 QYRDNKLSQQLETLATW--NHMIVEERVEQTFLDTLASLYDSV--------LEQRLETL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 IAQ G + + + L++V + + Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582 >gi|307129361|ref|YP_003881377.1| DNA primase [Dickeya dadantii 3937] gi|306526890|gb|ADM96820.1| DNA primase [Dickeya dadantii 3937] Length = 584 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 172/618 (27%), Positives = 285/618 (46%), Gaps = 50/618 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ H+L YL RG+ I F +G P + + + + Sbjct: 119 LMEQLSAFYQHTLNQPAGTPAREYLSRRGLSDEVIRQFAIGCTPPGWDNALKRFGRSSEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR+R++FPIR RG+VIAFGGR + KYLNSPET Sbjct: 179 RTTLTDAGMLV-TNDNGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ I +++PL L+ + +TPD RA+L I + + Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRAKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDRLLPKAAEQTSSYQPPRLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E + L + + +L+ L E + Sbjct: 452 -----RILIGLLVQNPRLSAEVPELALNGVEENKVAGLELFLDLVKTCNESPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLS 592 ++ E + + L+ L + + ++ ++ Q L +R LS Sbjct: 507 EKYRESKYRKQLETLASWDHMIEEEELEEKFRVSLAELYDQLLQLRMDTLIARERTHGLS 566 Query: 593 ----RQKEEIEKQIAQVT 606 ++ ++ + + Sbjct: 567 TNERKELWSLQLALTRKN 584 >gi|325962749|ref|YP_004240655.1| DNA primase [Arthrobacter phenanthrenivorans Sphe3] gi|323468836|gb|ADX72521.1| DNA primase [Arthrobacter phenanthrenivorans Sphe3] Length = 642 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 146/663 (22%), Positives = 258/663 (38%), Gaps = 57/663 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I ++ YV G + CPFHDE++PSF G Y Sbjct: 5 IKREDIDEVRQRTDIKEVVDGYVTLKTAG----LGTFKGLCPFHDERSPSFTVRPQVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C GD ++F+ SF E+V++LAA G L D ++ + L+ Sbjct: 61 HCFGCGEDGDVIAFVQKQDHSSFQEAVEKLAARIGYELRYEDGGTGPNREEVGRRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A +FF L +L RG D A E F GYAP +L +HLR +GF+ Sbjct: 121 AHKIADEFFRAQLLTPGAAEARTFLHGRGFDRAAAEHFGCGYAPQGWDALLKHLRGRGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++ G+ +G+ YDRFR RLI+PI+ G I FG R L + + KYLN+PE Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIKDIAGDTIGFGARKLYEDDQGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV++ AG+ V++ Sbjct: 239 TALYKKSQVLYGIDLAKRSIAKD----------RQLVVVEGYTDVMACHLAGITTAVATC 288 Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ + +V FDGD G +AA +A + + + Sbjct: 289 GTAFGTEHIKIARRLLSDDGTGGEVVFTFDGDAAGQKAALRAFEEDQRFTA---QTYVAV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP + G A L+ PL + + + + +T + R + + Sbjct: 346 EPSGADPCDLRQSRGDEAVHALVQSRRPLFEFAIRTTLKQFNLDTVEGRVQGLKASVPVV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 I+D R Y QA+ L ++ + E + + + Sbjct: 406 AAIRDASTRTGYCQALTGWLGMPDPNEVLRLVNAELKNGAKRGETGGPAGPAARTAASTA 465 Query: 468 QSSLV---------------KGKLSKKPSLREAALLLTLINHPAIL-QEQYQELADIRYD 511 Q + + E L + P++L ++ + R+ Sbjct: 466 QPGGPGVAAGPPSGAVPSYHRPDPRDPVASMERQALEVALQEPSLLGGGIWERFSSARFV 525 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 Q + + + + R E+ E+ + L V + + A+ Sbjct: 526 TPAFQAVHDAM---RATDPALTADPV--RWVEQVMHEVPEPLRPLVSELSVVPLP--AST 578 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + Q Y + + ++R K + Q+ ++ + E L L + ++ + Sbjct: 579 EEAVQKYCRDILSRLFELQITRVKADKMGQLQRLDPAADPETYQRLNRELMMLEMERRSL 638 Query: 632 ESQ 634 ++ Sbjct: 639 RAE 641 >gi|291541029|emb|CBL14140.1| DNA primase [Roseburia intestinalis XB6B4] Length = 610 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 152/624 (24%), Positives = 258/624 (41%), Gaps = 34/624 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y D I+++ I ++I QYV ++ + Y+ CPFH+EKT SF + +K Y Sbjct: 4 YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF C G+ +FL +F E+++ LA AGV LP + ++++ + L+ + Sbjct: 59 YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L+ R R Y +R + ++ F LGY+ L +LR+KG+ + Sbjct: 119 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + E+GL + D YD+F NR +FPI +VI FGGR + KYLNSPET Sbjct: 179 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NLY A ++L EGYMDV++L QAG N V+SLGT Sbjct: 237 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT LL + + + L +D D G++AA +AI + G + + +DPD Sbjct: 285 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMKPYKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G ++K I + + + + P+ + + + + ++ Sbjct: 342 EFIKALGAEEYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKLCTFGEKLE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y A+ D+ + + YG A L + + K Sbjct: 402 RDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGSEKKKENGM 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL LI H + + + ++ + K L+ + P +I Sbjct: 462 IQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTVNPAKIVSM 521 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALYKR---FRLLSRQ 594 + L E + + ++ + K+ L Sbjct: 522 FQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNSIEYHLKNM 581 Query: 595 ----KEEIEKQIAQVTAKGEAEKT 614 +++ +A A E EK Sbjct: 582 APTDMAALQRSVADKKALEELEKV 605 >gi|223598|prf||0902269A primase dnaG Length = 580 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 291/630 (46%), Gaps = 57/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLINARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL+ YLD+RG+ I F L P + L+ Sbjct: 119 LMDGLNTFYQQSLQQPVATSARQYLDKRGLSHEVIARFGLVLRPPAGQRLKRFGGNPENR 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 QSLIDAGMLV--TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV+++ Q G+ V+SLG Sbjct: 236 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVAVAQYGINYAVASLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 286 TSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 346 DTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGET 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + A P +L ++++ Sbjct: 406 LRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM-------- 450 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + + L + + L L+ L + + Q ++ Sbjct: 451 -----RILIGLLVQNPELATLVPPLENLDENKL--PGLG-LFRELVNTCLSQPGLTTGQL 502 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L++L +W + NI Q + +L + LL ++EE Sbjct: 503 LEHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + T E+ L ++ E+ + Sbjct: 553 LIAR--ERTHGLSNEERLELWTLNQELAKK 580 >gi|262401782|ref|ZP_06078348.1| DNA primase [Vibrio sp. RC586] gi|262352199|gb|EEZ01329.1| DNA primase [Vibrio sp. RC586] Length = 587 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 170/631 (26%), Positives = 282/631 (44%), Gaps = 65/631 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI LL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDGLLARLDIVDVIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---------PKIEKKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + + K + Sbjct: 60 HCFGCGAHGNAIDFVMEFERMEFPEAIEELASTVGLEVEREERTPSSPFAKNTPTVKSEE 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKITANKHAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRSSEDMLVTAGVLIESDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKGK LY + L + I++VEGYMDV++L Q GV Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T L+LL++ + ++V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 SVASLGTSTTGDHLQLLFRQTNQVVCCYDGDRAGRDAAWRALENALSYLKSGNILKFLFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNC 411 GEDPDS++R YGK FE+ + + PL L+ E N + + ++ L Sbjct: 348 PDGEDPDSYVRKYGKADFEQQLANATPLSQYLFDNLIELHQLNLGSHEGKSALRALATPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I+ I D L+ + + +R F + + ++ P Sbjct: 408 IDKIPDPFLQEILEKLLDERTG--FDHQLRRKKARNSENRPAPHKAIKRTPM-------- 457 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L+ +P+ + + L +S + + + Sbjct: 458 -------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPH 503 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ + LL +L + E + + + Q + Sbjct: 504 ITTGQLLEHWRNSKNEALLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV--------- 553 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 +Q E ++ A+ + G + + + L Sbjct: 554 EKQIENLQ---AKARSVGLSTEERRELQDLI 581 >gi|270263178|ref|ZP_06191448.1| DNA primase [Serratia odorifera 4Rx13] gi|270042866|gb|EFA15960.1| DNA primase [Serratia odorifera 4Rx13] Length = 582 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 174/630 (27%), Positives = 284/630 (45%), Gaps = 53/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGTGPTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SL YL +RG+ I F +G+AP + + + + Sbjct: 119 LMEQLSTFYQQSLHQPSGTPARNYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDADT 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ SYDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RLALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EVFHKGRQLYGLYEAQQNHPTPQR----------LLVVEGYMDVVALAQYGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + + PL L++ ++PD RA+L I + + Sbjct: 347 DTLVRKEGKDAFEQRMELAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + K + Sbjct: 407 LRLYLRQQLGSKLGLLDDSQLDKLMPKQAENANTYQAPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L + L+ L + Q ++ + Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + + L+ L + + E +D ++ L ++ E + Sbjct: 506 QYRDNKLSQQLETLATW--NHMIVEDRVEQTFLDTLASLYDSV--------LEQRLETL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 IAQ G + + + L++V + + Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582 >gi|89075586|ref|ZP_01161991.1| DNA primase [Photobacterium sp. SKA34] gi|89048726|gb|EAR54298.1| DNA primase [Photobacterium sp. SKA34] Length = 585 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 167/623 (26%), Positives = 278/623 (44%), Gaps = 53/623 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DL+ I ++I V ++ N + ACCPFH+EKTPSF + K F Sbjct: 4 KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C V G+ L F+ F+++++ LA+ G+ +P + K + + Sbjct: 59 YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNNTHRGPKVADKRNY 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ + F+ L+ + YL RG+ ++ F +G+ PD +R + Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S++ ++ GLLI+ DN YDRFR R++FPI RG+VI FGGR L + KYLNSP Sbjct: 179 ESQKALVNTGLLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY F+ L ++ R I++VEGYMDV++L Q GV V+S Sbjct: 237 ETDIFHKGRELYGFYEVLQTHREPKR----------IMVVEGYMDVVALAQFGVDYAVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGT+ T ++ L++ + +V C+DGD G AA++A++ L +L G ++ F+ L GE Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS IR GK FE+ + E++PL + L+ + + +A+L I+ + Sbjct: 347 DPDSCIRAEGKNVFEQRVDEAMPLSEFLFNSLMRQVDTTSREGKAKLSTLAVPLIDKVPG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + + L + + + K K Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKTSKTVGQVQIKRTPM------------- 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535 ++ LI HP + + E ++N EL L + Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFENIELSGLNLLLSIVDKCRSNPNISTG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + +L V + + + A+ + +Q Sbjct: 505 QLLEHWRGTKNEATMARLAAWVLPLS-------KDEDNSLDVFLDAMDNIIDQ-CVKQQI 556 Query: 596 EEIEKQIAQVTAKGEAEKTAILI 618 E+++ + V E ++ L+ Sbjct: 557 EQLQTKSRTVGLSVEEKQELQLL 579 >gi|169829159|ref|YP_001699317.1| DNA primase [Lysinibacillus sphaericus C3-41] gi|168993647|gb|ACA41187.1| DNA primase [Lysinibacillus sphaericus C3-41] Length = 610 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 278/636 (43%), Gaps = 39/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I ++I +Y+ +R N ++ CPFH E+TPSF + K Sbjct: 8 KIPEEVIEQIRTQSDIVDVISEYMQLTKRGRN-----WFGLCPFHGEQTPSFSVSSDKQI 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ ++F+ + G SF ++V +L AG+ L P +K K + + Sbjct: 63 FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERAGIHLDVEPTFPGGTKKISKAEERMK 122 Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 DFFHH L + YL ERG IE +G++ S +L L +KG Sbjct: 123 EAHAFTADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 182 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236 ++ +++ E+GL+I + +DRFR R++FPIR G++IAF GR L S GE KYLNS Sbjct: 183 YNLQEMAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSTGEEAKYLNS 242 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F K + LYN A ++K + ++L+EG+MDVL+ GV N V+ Sbjct: 243 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNAVA 292 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LT + L +L ++ +C+DGD+ G AA +A L +V+ +L Sbjct: 293 TMGTSLTNQHITKLKRLVEQVTICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 349 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +IR G AF++ ++ + + N++F ++ + + + Sbjct: 350 LDPDEYIRTLGGQAFKEQILENPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEQLTGR 409 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + + + + ++A+ + P+Q + K Sbjct: 410 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAK---PEMPTQMPSMPVTQQQK 466 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL ++++ ++ + + + ++ L + E + + Sbjct: 467 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 526 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + +++ + +A E + ++ +++R + ++ Sbjct: 527 RFMEILDDAELRKIV-----------MEAALVERDPDQAEAEVVDSIRQLQKYR-IEQEI 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + E + + + + + I Sbjct: 575 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 610 >gi|260588572|ref|ZP_05854485.1| DNA primase [Blautia hansenii DSM 20583] gi|260541047|gb|EEX21616.1| DNA primase [Blautia hansenii DSM 20583] Length = 594 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 155/614 (25%), Positives = 266/614 (43%), Gaps = 44/614 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I ++I YV R+ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSDDLIEEVRSKNDIVDVISDYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AGV LP + + ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKYLADRAGVQLPEVEYSKEAKAASDFKSMLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A F+++ LK K YL R + I+ F LG +P +L ++L+ +G+ Sbjct: 116 EIQKKAASFYYYQLKQESGKPALDYLKGRQLSEDTIKKFGLGCSPRYSGALYQYLKGQGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E + E+GL D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 SDELLKESGLFNID-ERRGMQDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + + I+ EGYMDV+++ QAG N V+SL Sbjct: 234 TKIFDKSRNLYGLNIAR------------TSRKPYFIICEGYMDVIAMYQAGFHNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + ++L +D D+ G +AA + I + G V L+ +D Sbjct: 282 GTALTSGHASLMSRYTKEVLLTYDSDEAGQKAALRGIPI---LKAAGISPRVVNLAPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ GK AFEK + E+ K + + P+ + + + + ++ Sbjct: 339 PDEFIKAEGKEAFEKRLEEAENYFLFEIKVLEKQYHLSDPESKTQFYREIARKLLEFPEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y ++I R Q F+ + A R+ S K Sbjct: 399 LERNNYIESISARYQIKFEDLRRMVNNMALSGTGVAVK-------PRMEAVSKKKEGKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L ++P++ + + + K+ +F E P ++ Sbjct: 452 AGHTAQKLMLTWLSSYPSMFKTIDGLIEPADFTTPLYHKVAEIVFEQHKEG-EVNPAKLL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL------------YK 586 R + + + L +A + V + + ++A + Sbjct: 511 NRFSDAEEQKEITSLFHASLHLESEEDAKKAVLETVCRLKRDSIAWQSTNLPPTDLFGLQ 570 Query: 587 RFRLLSRQKEEIEK 600 R ++ E++E+ Sbjct: 571 RIVEARKRLEDLER 584 >gi|227503146|ref|ZP_03933195.1| DNA primase [Corynebacterium accolens ATCC 49725] gi|227076207|gb|EEI14170.1| DNA primase [Corynebacterium accolens ATCC 49725] Length = 639 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 136/653 (20%), Positives = 255/653 (39%), Gaps = 52/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + P+ ++G+YV PF DEKTPSFH +G+ Sbjct: 5 RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + + + + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +F+ L+ +L +RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAVHEFYRKQLETPEAATARNFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRMGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+P Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+HK K L+ A + ++VEGY DV+++ AG++ V+S Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------EGHQAVVVEGYTDVMAMYAAGIKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L ++ FDGD+ G +AA +A + + Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFHGELIYTFDGDEAGQKAAMRAFE---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ + +P+ + + + + +T + R + Sbjct: 346 SVAPDGMDPCDLRLEKGDAAVRDLVADRIPMFEFVIQSVIADFRIDTAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + I+DQ L+ Y++ + + ++ ++ E + K R D P Sbjct: 406 IVAQIRDQPLQREYARRLAGWVGWNDPEEVLRQVRAEAKKPKKADKPTIRRFDNAQPQPA 465 Query: 466 LMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 ++ K+ L + L + P ++ + + Y N+ + + + + Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPEVVGSYFDGITADAYTNDAYRIVRQAISA 525 Query: 525 DFVEQKYFL------PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 +K + + + + +L + A + Y Sbjct: 526 VGGAEKGATMSGVDWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGA----------EKY 575 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + ++ Q +++ Q+ ++ + L + L + ++ Sbjct: 576 ADSVLSRLQETVVGDQIAQLKAQLGRMRPTDDEAGYNSLFADLIALEQARREL 628 >gi|312898763|ref|ZP_07758152.1| DNA primase [Megasphaera micronuciformis F0359] gi|310620194|gb|EFQ03765.1| DNA primase [Megasphaera micronuciformis F0359] Length = 610 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 164/620 (26%), Positives = 280/620 (45%), Gaps = 41/620 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + +FI+ + I ++I Y RR +WACCPFH+EKT SF KG Sbjct: 3 MKFSHEFIEQVRQANDIVSVISDYAGLKRRGNK-----FWACCPFHNEKTASFTVTAEKG 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLI 118 YYCF CH GD FL A SF E+V+RLA AG+ +P + E K+++ + L Sbjct: 58 LYYCFGCHASGDVFKFLMAKENISFAEAVRRLAERAGLQVPEEERSAEDIKRDEARKRLY 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ E+A FFH+ L K + YL +RG+ I F+LG+APDS L + KG Sbjct: 118 KINEMACAFFHNCLVKTRYGEEGKAYLRKRGLSEQTIRDFRLGFAPDSWNKLTDAFAAKG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + ++++E GL + + YD FR R+IFPI R +V+ FGGR L KYLNSP Sbjct: 178 VAGKELVELGLAKEKNG--RFYDAFRKRVIFPIYDGRDRVVGFGGRVL-DDSKPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+K L+ A + R +LVEGYMDV+S G+ NVV+S Sbjct: 235 ETPIFNKRNLLFALNRAHRSIYDEGRA----------VLVEGYMDVVSAHNKGITNVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA TE Q RLL + + ++L +D D G +A +A+++V G + ++L+ G+ Sbjct: 285 LGTAFTERQARLLQRQAKELILAYDMDTAGRQATLRAMEIVRSL---GLHIRVLVLADGK 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I +G AF++ + + +++ + + +T + ++ + + + Sbjct: 342 DPDEYINAHGPDAFKEALQAAPGVLEYMLLTALKEYDADTLEGKSSITASVMPALVQTDS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + + +RLQ +E++ Y R + R Q + + Sbjct: 402 AVVADAFMAKLAERLQIDENAVRSEYNAYVRRHPEAGR---QPVVISTNVVKQTESARRG 458 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ E +L +L+ HP ++ + + + ++ + + + + + Sbjct: 459 STTAVAEENILRSLLEHPESYGRIEDKMEASYFVDPVRRSIFEEIHRQYTQTGGYSVSSV 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L G E + L + L + + L +E Sbjct: 519 REGLSTEGEAETARILMSDEVPMD--------------EQVLLDYVLRFKLQALQNDYKE 564 Query: 598 IEKQIAQVTAKGEAEKTAIL 617 + A+ + + + L Sbjct: 565 HSARAAEYSIRNDLRLKDEL 584 >gi|291536630|emb|CBL09742.1| DNA primase [Roseburia intestinalis M50/1] Length = 610 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 152/624 (24%), Positives = 258/624 (41%), Gaps = 34/624 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y D I+++ I ++I QYV ++ + Y+ CPFH+EKT SF + +K Y Sbjct: 4 YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF C G+ +FL +F E+++ LA AGV LP + ++++ + L+ + Sbjct: 59 YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L+ R R Y +R + ++ F LGY+ L +LR+KG+ + Sbjct: 119 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + E+GL + D YD+F NR +FPI +VI FGGR + KYLNSPET Sbjct: 179 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NLY A ++L EGYMDV++L QAG N V+SLGT Sbjct: 237 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT LL + + + L +D D G++AA +AI + G + + +DPD Sbjct: 285 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMKPYKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G ++K I + + + + P+ + + + + ++ Sbjct: 342 EFIKALGAEKYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKLCTFGEKLE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y A+ D+ + + YG A L + + K Sbjct: 402 RDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGSEKKKENGM 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL LI H + + + ++ + K L+ + P +I Sbjct: 462 IQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTVNPAKIVSM 521 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA---NIVDVRQGYQQALALYKR---FRLLSRQ 594 + L E + + ++ + K+ L Sbjct: 522 FQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNSIEYHLKNM 581 Query: 595 ----KEEIEKQIAQVTAKGEAEKT 614 +++ +A A E EK Sbjct: 582 APTDMAALQRSVADKKALEELEKV 605 >gi|157148638|ref|YP_001455957.1| DNA primase [Citrobacter koseri ATCC BAA-895] gi|157085843|gb|ABV15521.1| hypothetical protein CKO_04465 [Citrobacter koseri ATCC BAA-895] Length = 581 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 167/629 (26%), Positives = 293/629 (46%), Gaps = 54/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLDFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SL + + YL +RG+ + ++ F +G+AP + + + Sbjct: 119 LMDGLNAFYQQSLAHPTAEPARQYLQKRGLSAEIVQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++AG+L+ ++ +YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RALLLDAGMLV-NNDQGRTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQHNAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G ++ F+ L GEDP Sbjct: 287 TSTTADHIHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYITDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++LPL L+ +TPD +L IN + Sbjct: 347 DTLVRKEGKEAFEARMEQALPLSLFLFNSLLPQVDLSTPDGSTQLAALALPLINQVPGDT 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 407 HRIQLRQMLGLKLGIFDDSQLDRL-------MPKQAESGTVRPAPQLKRTTM-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + L L+ L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPDLAPLVPPLGGLDQKKLPGLG-LFEELVNTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L++L +W + +I + + +L + +L ++EE+ Sbjct: 506 HYRGTNSAATLEKL-------SMWDDIADKDI--AEKTFTDSLN-HMFDSMLKLRQEEL- 554 Query: 600 KQIAQVTAKG-EAEKTAILISILHEVHIQ 627 IA+ G E+ L ++ E+ + Sbjct: 555 --IARDRTHGLSNEERRELWTLNQELAKK 581 >gi|308188145|ref|YP_003932276.1| DNA primase [Pantoea vagans C9-1] gi|308058655|gb|ADO10827.1| DNA primase [Pantoea vagans C9-1] Length = 581 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 176/620 (28%), Positives = 284/620 (45%), Gaps = 54/620 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNFDRLEFVESIEELATSHGLDVPYEAGSGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ L+ + + YLD RG+ + I F +GYAP ++ + ++ Sbjct: 119 LMENLNGFYQQGLQQSSAQPARDYLDRRGLSADIINHFAIGYAPAGWDNVLKRFGKQSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAG+L+ D +YDRFR+R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEAGMLVSNDKG-RTYDRFRDRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A+ + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 PIFHKGRQLYGLYEAVKNHPEPAR----------LLVVEGYMDVVALAQYGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ ++ D +A L I I + Sbjct: 347 DTLVRKEGKAAFEARMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + P +R Sbjct: 407 LRIYMRQELGNKLGILDDNQLEKL----MPKLAASGTAPVAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ LI +P + L L+ L E ++ + Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLSESKMPGL-PLFVELVGRCTENPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L+ L + + + EA D + L + +E Sbjct: 506 LYRGTNFSQTLETLA--IWNHMIVDEEAEAVFQDSLASIYDS--------ALEER---LE 552 Query: 600 KQIAQVTAKG-EAEKTAILI 618 IA+ +G A++ L Sbjct: 553 FLIARERTQGLSADERRELW 572 >gi|239979291|ref|ZP_04701815.1| DNA primase [Streptomyces albus J1074] Length = 625 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 147/645 (22%), Positives = 265/645 (41%), Gaps = 45/645 (6%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + +PI ++ +Y+ NA G+ CPFHDEK+PSF + +KG ++CF C Sbjct: 4 VRDAVPIDAVVSEYLSL----RNAGGGNLKGLCPFHDEKSPSFQVSPAKGLFHCFGCQEG 59 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRLIEVATDFF 128 GD ++F+ + +F E+V+RLAA AG+ L + + + LI + A +F+ Sbjct: 60 GDTITFVRKVDHLTFSEAVERLAAKAGITLRYEEGGYNPSHQRGERIRLIEAHKAAAEFY 119 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + +L ERG D A F +GY+P L +LR +GF+++++I +GL Sbjct: 120 AKQLDGPEAETGRRFLAERGFDQAAATHFGIGYSPVGWDHLTRYLRGQGFTDKELITSGL 179 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKN 247 D DRFR RL++PIR G+V+ FG R L + ++ KYLN+PET ++ K + Sbjct: 180 A--QDGRRGPVDRFRGRLMWPIRDIGGEVVGFGARRLREDDNGPKYLNTPETPIYRKSQV 237 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY A + K+ R ++VEGY DV++ AG+ V++ GTA + + Sbjct: 238 LYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGITTAVATCGTAFGQDHI 287 Query: 308 RLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 ++L +L R++ FDGD G +AA +A + + G DP Sbjct: 288 KILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIAPDGMDPCDL 344 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 G A L+ PL + ++ TP RA + IK ++ Sbjct: 345 RLAKGDEAVADLVEPRTPLFEFALRQIVSRYDLETPAGRAAALDEAGPVVARIKSASSQH 404 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------SQRLMQSSLV 472 + + L L +++ G W ++ P + S Sbjct: 405 EVAVQLAGMLGILDTQFVVRRIGQLARWARDRGSDAGPAPRRADVAGHAVETSAPRFSGP 464 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L E LL + P ++ + + + + + Sbjct: 465 ALNLRSPAFTTERELLKLALQRPELVSPAFDAYGSDEFTAAPYAAVREAIEEAGGAELGA 524 Query: 533 LPE-EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + R+ E + ++ + ++ + T + + Y + R R + Sbjct: 525 DLGMDYLTRVREAAPDDTVRAMVTELAVEAIRRRTVD-------EVYAGEQLVKVRLRAV 577 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R+ +++ +V A+G+ + A + + L + + + A Sbjct: 578 ERRIRDLQGTFTRVAAQGDQTQLASVQNELWVLQQYDRSLRNNGA 622 >gi|197286217|ref|YP_002152089.1| DNA primase [Proteus mirabilis HI4320] gi|227357333|ref|ZP_03841690.1| DNA primase [Proteus mirabilis ATCC 29906] gi|194683704|emb|CAR44683.1| DNA primase [Proteus mirabilis HI4320] gi|227162596|gb|EEI47585.1| DNA primase [Proteus mirabilis ATCC 29906] Length = 582 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 292/633 (46%), Gaps = 58/633 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N ACCPFH+EKTPSF N K F Sbjct: 4 RIPRSFINDLLARTDIIDLIDARVPLKKQGKNHS-----ACCPFHNEKTPSFTVNSDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LAA+ G+ +P + I+ +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLDFVETIEELAAMHGLEVPYESGTGSSPIERHIRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++E ++ +L + YL RG+ I F +G+ P ++ + Q + Sbjct: 119 VMEKLNQYYKSTLNTPDAQEARNYLAHRGLSEEVITRFSIGFVPTGWDNILKRFGQNPDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++EAG++I ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 QALLLEAGMVI-TNDKGRTYDRFRQRVMFPIRDRRGRVIAFGGRVL-GDDLPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQHTHPNPAK----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L L G + F+ L G+DP Sbjct: 287 TSTTAEHIQLLFRTTDNVICCYDGDRAGRDAAWRALETALPFLNDGRSLRFMFLPEGDDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK AFEK + ++ L + L+ +T + +L + I+ I + Sbjct: 347 DSLVRREGKEAFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARPLIDQIPSET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y + + + + R + +N+ H + +L + + Sbjct: 407 LRLYLLRELGNLTG------NPDIEQMDRLFGRNSLHHETSYQPTKLRTTPM-------- 452 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ LI +P Q + L + L+ L S Q +I Sbjct: 453 -----RILIALLIQNPEFCQLVPPLEGLNTEKIAG---LSLFIELVSLCQAQPGLNTGQI 504 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E FG+ L++L + +I ++ + + + + Sbjct: 505 IELYRENKFGKQLEKLAMW----------NDIDIDEIAEKTFTDTLDHLFLTAMDERLNA 554 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + IA+ +G + + ++ + ++ + Sbjct: 555 L---IAKERTEGLTQNEREEVQLI--IQARVKK 582 >gi|193213161|ref|YP_001999114.1| DNA primase [Chlorobaculum parvum NCIB 8327] gi|193086638|gb|ACF11914.1| DNA primase [Chlorobaculum parvum NCIB 8327] Length = 632 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 174/646 (26%), Positives = 292/646 (45%), Gaps = 40/646 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I ++ I +++ YV + + A PF EKTPSF + K Y Sbjct: 2 IPQRMIDEVRQSSDIVDIVSDYVRLNPSGR-----HFKALSPFTQEKTPSFIVSPDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121 CFS G+ +F+ + +F E+V+ LA AGV K ++++K +++ + Sbjct: 57 KCFSSGKGGNVFTFIMEMEKVTFPEAVEMLAKRAGVDTSKYQLQKAQQEDKQESNQHETL 116 Query: 122 EVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FH +L++ Y + +RG+++ I F LG+AP++ L + R+ Sbjct: 117 RWAARLFHQTLESDAGRAAYAYLVGKRGLEASTIRKFGLGFAPEAWEFLLDAARRDNIPV 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 E++ GL+ + YD FRNR+IFPI + GQV FGGRTLS ++ KY+NSPE+ Sbjct: 177 EQLTALGLVTRHRERNSLYDTFRNRIIFPILTVGGQVAGFGGRTLSNDPQTPKYINSPES 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K LY A N ++K ILVEGYMDV+++ QAGV N V+S G Sbjct: 237 AIFEKSKLLYGMHAAKNDIRKQ----------ETAILVEGYMDVIAMHQAGVTNTVASSG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT YQ ++L + + R++ +DGD+ G ++ ID++L G VLL G+DP Sbjct: 287 TALTRYQAKILKRYTSRVLFLYDGDNAGKKSMLAGIDILLSE---GLTPWVVLLPGGDDP 343 Query: 360 DSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DSFIR YGK AF E+L E D + + PD ++ + I I D Sbjct: 344 DSFIRNYGKEAFLEELESEKSSFQDFQLRCYRDAGLMENPDTASKAISAMTKSIALIADP 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +L Q A + +GPSQ+ +SS ++ Sbjct: 404 VQKELYLEELSKKLDLSRQTLR---KVMASSNDDRAPRYESRGPSQQ--KSSPEVKADNR 458 Query: 479 KPSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QK 530 S+ E L L+ +L + ++ + +++ L F E + Sbjct: 459 PISVAERTFLEALLESTFYGNEVLDFAASHESMFTLEHPAARAIFTHLVERFREMDDKEG 518 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588 + L + + ++ + + + R+ L K Sbjct: 519 HIDITSEISSLGLEEARNIALDILFRLPVSETNLPSPQEAAQHARRCLSHFLVAVKTIVL 578 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQK++I + ++ + E + L + LH+++ Q+ ++E + Sbjct: 579 EPLQRQKQDI---LNRLNSTSEKPEEKKLFAQLHDINNQLREMEQE 621 >gi|296333321|ref|ZP_06875774.1| DNA primase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675174|ref|YP_003866846.1| DNA primase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149519|gb|EFG90415.1| DNA primase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413418|gb|ADM38537.1| DNA primase [Bacillus subtilis subsp. spizizenii str. W23] Length = 606 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 152/572 (26%), Positives = 270/572 (47%), Gaps = 27/572 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGESTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P V + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFAESVSHLADKYQIDFPDDITVHSGARPESSGEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG I+ F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLINTKEGQEALDYLLSRGFTKELIDEFQIGYALDSWDFITKFLVKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FSE ++ +AGLLI ++ + +DRFRNR++FPI G V+AF GR L + KY+NSP Sbjct: 179 FSEAQMEKAGLLIRREDGSGYFDRFRNRVMFPIHDHHGAVVAFSGRAL-GSQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF+ A +++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFYKARLHIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT+ +++L + I+LC+D D G A KA DL G +V ++ G Sbjct: 288 MGTSLTDDHVKILRRNVEEIILCYDSDKAGYEATLKASDL---LQNKGCKVRVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ +I S+ ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYIKKFGGEKFKNDIIDASVTVMAFKMQYFRKGKNLSDEGDRLAYIKDVLKEISTLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKG 474 + Y + + + + S + + K NA + + + + + + Sbjct: 405 GSLEQEVYVKQLASEFSLSQESLTEQLSVFSKQNKPADNADNGGETKTRRAHLTTKARQK 464 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L E LL ++ +++++ + +++ +E + L ++L++ + E P Sbjct: 465 RLRPAYENAERLLLAHMLRDRSVIKKVIDRVG-FQFNIDEHRALAAYLYAFYEEGAELTP 523 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + + R+ + +LL + + L A Sbjct: 524 QHLMARVTDDQISQLLSDILMLQINQELSEAE 555 >gi|126652264|ref|ZP_01724443.1| DNA primase [Bacillus sp. B14905] gi|126590996|gb|EAZ85108.1| DNA primase [Bacillus sp. B14905] Length = 611 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 145/636 (22%), Positives = 278/636 (43%), Gaps = 39/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I ++I +Y+ +R N ++ CPFH E+TPSF + K Sbjct: 9 KIPEEVIEQIRTQSDIVDVISEYMKLTKRGRN-----WFGLCPFHGEQTPSFSVSTDKQI 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ ++F+ + G SF ++V +L AG+ L P +K K + + Sbjct: 64 FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERAGIHLDVEPSFPGGTKKISKAEERMK 123 Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 DFFHH L + YL ERG IE +G++ S +L L +KG Sbjct: 124 EAHAFTADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 183 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236 ++ +++ E+GL+I + +DRFR R++FPIR G++IAF GR L S GE KYLNS Sbjct: 184 YNLQEMAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSTGEEAKYLNS 243 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F K + LYN A ++K + ++L+EG+MDVL+ GV N V+ Sbjct: 244 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNAVA 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LT + L +L +I +C+DGD+ G AA +A L +V+ +L Sbjct: 294 TMGTSLTNQHITKLKRLVEQITICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 350 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +IR G AF++ ++ + + N++F ++ + + + Sbjct: 351 LDPDEYIRTLGGQAFKEQILENPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEQLIGR 410 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + + + + ++A+ + P+Q + K Sbjct: 411 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAK---PEMPTQTPSMPVTQQQK 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL ++++ ++ + + + ++ L + E + + Sbjct: 468 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 527 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + +++ + +A E + ++ +++R + ++ Sbjct: 528 RFMEILDDAELRKIV-----------MEAALVERDPDQAEAEVVDSIRQLQKYR-IEQEI 575 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + E + + + + + I Sbjct: 576 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 611 >gi|238794324|ref|ZP_04637936.1| DNA primase [Yersinia intermedia ATCC 29909] gi|238726318|gb|EEQ17860.1| DNA primase [Yersinia intermedia ATCC 29909] Length = 582 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 173/598 (28%), Positives = 284/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGSSANQAREYLKNRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + + PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEVAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVDTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R++ Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARER 559 >gi|229174967|ref|ZP_04302487.1| DNA primase [Bacillus cereus MM3] gi|228608635|gb|EEK65937.1| DNA primase [Bacillus cereus MM3] Length = 598 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGMAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L+EGY DV++ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLLEGYADVMAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + S N + Q L R +K E Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLSR-HQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|289207449|ref|YP_003459515.1| DNA primase [Thioalkalivibrio sp. K90mix] gi|288943080|gb|ADC70779.1| DNA primase [Thioalkalivibrio sp. K90mix] Length = 594 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 169/609 (27%), Positives = 268/609 (44%), Gaps = 31/609 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI +LL I +I + V + ++ ACCPFH EKTPSF+ + K FY Sbjct: 5 IPQAFIDELLERSDIVEVIQRRVSLKKAGR-----EFAACCPFHGEKTPSFYVSPQKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G +SFL SF E+V++LA AG+ +P +K+E L + Sbjct: 60 HCFGCGAHGTAISFLMEYENLSFPEAVEQLAEQAGLEVPREAGGDDKREA-HAPLYEALN 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +++ L+ + YL RGID + +++G+AP S Q FS ++ Sbjct: 119 AAAEYYVQQLRQT--PKAVEYLKNRGIDGNTARDYQIGWAPPS---GLIEALQPRFSPQQ 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +++AGL D+ +RFR R++FPIR RG++ FGGR + + KYLNSPE+ +F Sbjct: 174 LVDAGLAARRDDG-GIRERFRARIMFPIRDRRGRITGFGGRLI-EDGEPKYLNSPESEVF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG+ +Y F A I++VEGYMDV+ L +AG + V+ +GTAL Sbjct: 232 HKGQTIYGLFEARKA----------GTRLDDIVVVEGYMDVVGLARAGFRRAVACMGTAL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L L++ RI LCFDGD G RAA++++ L + V + L G+DPDS Sbjct: 282 TRAHLDSLFRQVSRITLCFDGDAAGRRAAWRSLAEALPAIQGLREVRVLFLPEGDDPDSL 341 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G +E + +LPL + L + E +T + R + +D R Sbjct: 342 VLRDGLAGWEGRLAAALPLSETLVRLLREEHPTDTAEGRTRFAHAAMKLVATTRDPLFRD 401 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + ++ + + S+ G + PS Sbjct: 402 QLVERVAQETHLSPERLGEQLREAEDGNVRATGPASGPSDIPE-APSAEPAGAARETPSA 460 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 ALL ++ HP + Q + + Q L L E+ + +R Sbjct: 461 LWGALLARILQHPELEWSQSELADLTAFPGTAAQTL-GKLLEALQERPGCSSAHLLERFR 519 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEI 598 + L+ L + G T + + RQ Q R R L+R E Sbjct: 520 DDRHFNRLQALAARELGDGDPKVTQQVAMDCARQLLLQ--QARTRIRELTRADGGLATEQ 577 Query: 599 EKQIAQVTA 607 +++A++TA Sbjct: 578 REELARLTA 586 >gi|226311660|ref|YP_002771554.1| DNA primase [Brevibacillus brevis NBRC 100599] gi|226094608|dbj|BAH43050.1| DNA primase [Brevibacillus brevis NBRC 100599] Length = 624 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 169/649 (26%), Positives = 284/649 (43%), Gaps = 42/649 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 +F+ + + I +++G+YV + + CPFH EK+PSF+ N + F++ Sbjct: 6 SDEFVNQVRAAVDIVDVVGEYVQLRKSGR-----AFLGLCPFHSEKSPSFNVNAERQFFH 60 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122 CF C GD SFL L +F E++ +LA AG+ +P E EK + + Sbjct: 61 CFGCGAGGDIFSFLMKLEQLTFPEALHKLAERAGIAVPQPQQVEESPEKRMKHVMQEAHT 120 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + +H+ L K YL +RG+ I +++G+APDS + + L ++GFS+E Sbjct: 121 FVSRLYHYVLTKTPYGAEAMKYLAKRGMSEATIAEYQIGFAPDSWDFVTQQLTKRGFSQE 180 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-------VKYL 234 ++EAGLL D +DRFR R++FPI+ S+G I FGGR L + KYL Sbjct: 181 LMVEAGLLARSDAG-KIFDRFRGRIMFPIQDSQGNAIGFGGRLLQGSKHNSNQKSQPKYL 239 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPE++LF+K L+N A ++K +L EGY+DV+S QAG Sbjct: 240 NSPESLLFNKSATLFNLHRARPIIRK----------RKEALLFEGYVDVISAWQAGFTQG 289 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 +++LGTALTE Q R+L + + +VLC+DGD G A KAI + G V L Sbjct: 290 IATLGTALTEQQARILRRNTESVVLCYDGDAAGQEATSKAIHV---LQQAGLIVRVAPLP 346 Query: 355 RGEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +G DPD +IR +G AF ++++++++P+ K ++A L IN Sbjct: 347 QGVDPDDYIRQHGAEAFSQQVLLQAMPITAFRLKHLRSQFVIKDETDKARLIAKAVEIIN 406 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSL 471 + R Y + + + E K + + Sbjct: 407 ELGSPVERDMYQRQLAEEYSLTLGDLKWESKRAYNQQKSERQRDKVTPAWNNSINNGKVT 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + L E LL ++ + I QE + + +E L ++L++ + E Sbjct: 467 LAKTLPPAYHTAERMLLYYMMRNEEIAARVQQECSA-HFQVDEHDALAAYLYAYYAEGNP 525 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P + + + +L L + + + +++ +Q + Y + L Sbjct: 526 EDPGKFIHYVQDDLLKQLASGLA-------MMECNNDVSELEIGDYIKQ-VNNYPKRAEL 577 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 R ++E Q A + L L + +E + A+ EG Sbjct: 578 ERLRDEQRSLHLQAAAADSEDARKQL--ELQAAVTGMKILELENALKEG 624 >gi|315078097|gb|EFT50148.1| DNA primase [Propionibacterium acnes HL053PA2] Length = 623 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 143/654 (21%), Positives = 258/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A + F + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEVFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|311741384|ref|ZP_07715208.1| DNA primase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303554|gb|EFQ79633.1| DNA primase [Corynebacterium pseudogenitalium ATCC 33035] Length = 640 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 138/653 (21%), Positives = 259/653 (39%), Gaps = 52/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + P+ ++G+YV PF DEKTPSFH +G+ Sbjct: 5 RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + + + + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARTEKPGTRQRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ L+ + +L +RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAAHEFYRQQLETPQAATARDFLLDRGFSREVIYDFECGYAPEGWDTATKHLLRLGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+P Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+HK K L+ A + + ++VEGY DV+++ AGV+ V+S Sbjct: 239 ETMLYHKSKVLFGLDLAKRNIA----------DNHQAVVVEGYTDVMAMYAAGVKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L + ++ FDGD+ G +AA +A D + Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A +LI + +P+ + + + +T + R + Sbjct: 346 SVAPDGMDPCDLRLQKGDAAVRELIADRIPMFEFVIQSVIAEYRIDTAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+DQ L+ Y++ + + + + + K A + Q + Sbjct: 406 VVAQIRDQPLQREYARRLAGWVGWANPEEVLQQVRAEARKPKKAEKPTIRRFDNAKQQPA 465 Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + PS +E L + P + + + Y N+ + + + + Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPQVAGSYFDGITADAYTNDAYRLVRQAIST 525 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578 + + E + + +++D + +E + + + Y Sbjct: 526 AGGAAQGASMPAV----------EWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGPEKY 575 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + ++ Q +++ ++ ++ + L + L + ++ Sbjct: 576 ADSVLSRLQETVVGDQIAQLKARLGRMRPSDDEASYNSLFADLVALEQARREL 628 >gi|258593490|emb|CBE69829.1| putative DNA primase [NC10 bacterium 'Dutch sediment'] Length = 614 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 168/635 (26%), Positives = 285/635 (44%), Gaps = 59/635 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + +L I LIG+Y+ + A CPFH+EKTPSF N + + Sbjct: 17 IAEEAVSRVLAGTDIVQLIGRYLPLKPAGR-----YFKALCPFHNEKTPSFTVNPERQIF 71 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-----KKEKIQTDL 117 +CF C GD + FL SF E+++ LA AG+ LP + E + L Sbjct: 72 HCFGCGEGGDAIGFLMKQEHLSFPEAIRSLADRAGISLPAQSRTHAGSGTGQNEHARHGL 131 Query: 118 IRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + +VA +FF H L++ YL RGI +E F LGYA S L HL ++ Sbjct: 132 LEIHKVAAEFFRHQLQHQTVGTTARAYLRSRGIPDTVVEQFGLGYATASWDGLLRHLLRR 191 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 GFS++++ EAGL + + + +YDRFRNRL+ PI S GQVIAFGGR + + KYLNS Sbjct: 192 GFSKQQVEEAGLALLRKDGSGAYDRFRNRLMIPICDSSGQVIAFGGRVM-DDSAPKYLNS 250 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET ++ KG +L+ A + ++ ++VEGY D+++L +GVQ+ V+ Sbjct: 251 PETAIYKKGAHLFGLHLAASAIR----------DRGSAVVVEGYFDLIALHASGVQHTVA 300 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTALT Q+ LL + + R L FD D G+ AA + ++ L G +LL G Sbjct: 301 VLGTALTAQQITLLHRHTTRAFLVFDPDPAGIAAARRCVE---SLLNSGLDWRVILLPDG 357 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD F+R G +AF + + +S L++ L R+ +P+ +AE + + + Sbjct: 358 EDPDRFLRERGPSAFAEALAQSKDLMEFLLDRKVSGFDLTSPEGQAEAVNAVLPLLGAVG 417 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 ++ R +Y+ + R+ + E + R K++ + Sbjct: 418 NEVTRQHYADKLARRVSLSNDAIVRELNRQVRGRKRDT----------------IPLTLQ 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E LL ++HP + + ++ L++++ + + P Sbjct: 462 PRGLPSIEWKLLHLALHHPGAADRVRKRVRPEELEDRSLRRIFQYAVVGQETGRGATP-- 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L ++ + + T+ D + ++AL+ R+++ Sbjct: 520 -------------LAAIEPEAQRILTQLLATDLAEYDGEEAVERALSDCLARLTARRERK 566 Query: 597 ---EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E+ +Q+ G+ A L + ++ Sbjct: 567 KGEELRRQMEAAERAGDHAMVAHLQAEFLALNRNR 601 >gi|262203033|ref|YP_003274241.1| DNA primase [Gordonia bronchialis DSM 43247] gi|262086380|gb|ACY22348.1| DNA primase [Gordonia bronchialis DSM 43247] Length = 639 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 143/652 (21%), Positives = 255/652 (39%), Gaps = 44/652 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +++G+YV R CPFHDEKTPSFH + G Sbjct: 4 RIPDRDITAIRDQTRIEDIVGEYVALRRAGA----DSLKGLCPFHDEKTPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD SFL SF+E+V++LA G + K + L+ Sbjct: 60 FHCFGCGEGGDVYSFLQKQEHVSFVEAVEQLADRIGYRINYEGGGTAIKRDRGTRARLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L+ ++ YL ER D+ A F GYAPD ++ + L +GF Sbjct: 120 ANAAAHKFYVAALQTPEAQKARDYLTERDFDAAAAAQFGCGYAPDGWDTMSKALLSQGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 ++ AGL +G DRFR RL++PIR+ G +I FG R L +++ KY+N+PE Sbjct: 180 FSELKAAGLSTEGRK--GPIDRFRRRLLWPIRNLGGDIIGFGARKLFDDDTMGKYMNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K + L+ A + + +++VEGY DV+++ +GV V+S Sbjct: 238 TMLYKKSQVLFGLDHAKKNIAR----------GHQVVVVEGYTDVMAMHLSGVTTAVASC 287 Query: 299 GTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L L+ +L ++ FDGDD G AA KA + + Sbjct: 288 GTAFGEDHLSLIRRLMMDDSYFRGEVIYTFDGDDAGKAAALKAFEGEQSISG---QTFVA 344 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A LI +P+ + + +T + R Sbjct: 345 IAPDGMDPCELRQAKGDAAVRDLIARRVPMFEFAIRTLLTEHDLDTAEGRVHALREAVPV 404 Query: 412 INHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRD--------QKGP 462 + IKD LR Y++ + + + + + G ++ + RD ++G Sbjct: 405 VARIKDIALRDEYARQLAGWVGWEEVGQVLARVREEGAKVQRTSVSRDRSTTVNGARRGR 464 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + + + + L + +P I + L + + + Sbjct: 465 PEGESRPVMARPLATDPRLWPQREALKAALQYPGIAGTVFDSLPVECFTEPAYAAVRQAM 524 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + + ++ L ++ G+ D Y + Sbjct: 525 TALGGTSSGLGGAGWVDAVRTAVDDQSIEPLVTELAVEGMPV------DEDNIPRYISGV 578 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + Q +I+ ++ ++ + + + L + + Q Sbjct: 579 LARLQEVWVGAQIADIKSRLRRMAPGEDPDGYNAVFGDLVALEAYRRSLLEQ 630 >gi|238796947|ref|ZP_04640451.1| DNA primase [Yersinia mollaretii ATCC 43969] gi|238719207|gb|EEQ11019.1| DNA primase [Yersinia mollaretii ATCC 43969] Length = 582 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 282/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQNANPAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNPPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENTNTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559 >gi|157693021|ref|YP_001487483.1| DNA primase [Bacillus pumilus SAFR-032] gi|157681779|gb|ABV62923.1| DNA primase [Bacillus pumilus SAFR-032] Length = 609 Score = 371 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 160/638 (25%), Positives = 295/638 (46%), Gaps = 42/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I +IG+YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDELLEQIQKNADIVEVIGEYVQLRKQGRN-----YFGLCPFHGENTPSFSVSADKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQTD 116 ++CF C G+ SFL + G SFIE+V +A + LP +++ Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFIEAVSHVADKYHIDLPDHVANAQISSSHQEDTADHK 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +I E+ F+HH L + YL RG I F++GYA DS + + L + Sbjct: 119 MIEAHELLKKFYHHLLVNTKEGQNALDYLRARGFTDETIAKFEIGYALDSWDFVTKFLEK 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +GF + +AGLLI +N +DRFR+R++FPI G V+AF GR+L + KY+N Sbjct: 179 RGFDPAMMEKAGLLIQRENGTGFFDRFRDRVMFPIHDHHGTVVAFSGRSL-GDQQPKYMN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHK K LY+F A +++K R +L EG+ DV+S +GV V Sbjct: 238 SPETPLFHKSKLLYHFHDARMHIRKRERA----------VLFEGFADVISAVTSGVGESV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GT+LTE ++LL + I+LC+D D G A KA DL G +V ++ Sbjct: 288 ATMGTSLTEEHVKLLRRNVEEIILCYDSDTAGYEATMKASDL---LGKRGCKVRVAMIPD 344 Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD +IR YG F +I S+ L+ ++ + +R + I+ Sbjct: 345 GLDPDDYIRKYGGEKFRNDIIDASVTLMTFKMNFFRRGKNLSDEGDRLSYMKQVLREISR 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---SSL 471 + + Y + + + + + ++ A+ ++ ++ + + Sbjct: 405 LNGSLEQEIYMKQLAGEFSISLDSLKEQLELFEKQQRQEAKSTQEESGLEKRRAHLSTQV 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + +L E LL ++ ++++ + I ++ + + L +++++ + E K Sbjct: 465 RRKRLRPAYENAERMLLAHMLKSDDVIRKVLDRVG-IEFNIDSHRALATYIYALYEEGKE 523 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P+ + R+ + +++ QL + + +EA + D Y + + ++ ++ Sbjct: 524 PTPQHLMNRIED----DVINQLLTDIFMIQVGDELSEAELSD----YVKKVLNHRNLSMI 575 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +E+E+ A+ + + K A L + +++ + Sbjct: 576 KE--KELER--AEAERQKDFFKAATLAKEIIQLNRSLK 609 >gi|254281912|ref|ZP_04956880.1| DNA primase [gamma proteobacterium NOR51-B] gi|219678115|gb|EED34464.1| DNA primase [gamma proteobacterium NOR51-B] Length = 633 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 170/660 (25%), Positives = 274/660 (41%), Gaps = 60/660 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ F+ DLL + I ++I + V + N Y ACCPFHDEKTPSF N K F Sbjct: 4 RIPQKFLDDLLDRLDIVDVIDRRVKLRKTGKN-----YSACCPFHDEKTPSFSVNPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLI 118 +YCF C G+ + F+ F E+V+ LA AG+ +P + L Sbjct: 59 FYCFGCGAGGNAIGFVMDYEKLDFPEAVENLAQSAGLEVPREEARPGSAANSADSNKPLY 118 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +E + F+ SL+ + YL RG+ + F+LGYAP +L Q Sbjct: 119 ESLEQSAQFYERSLRQHPAAGSAVDYLKSRGLTGEIAKAFRLGYAPPGWDNLIAACGQSE 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +E++++ G+LI + YDRFR R+IFPI RG+VIAFGGR L + KYLNSP Sbjct: 179 AEQERLLKCGMLIKN-DRDRVYDRFRERVIFPILDQRGRVIAFGGRVL-GDDKPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK + LY + A Y + R I++VEGYMDV++L Q G+ V++ Sbjct: 237 ETPVFHKSRELYGLYQARKYNNRLER----------IVVVEGYMDVIALAQHGIGYAVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA +E L L++L P ++ CFDGDD G +AA++A++ L + G + F+ L GE Sbjct: 287 LGTATSEAHLERLYRLVPEVIFCFDGDDAGRKAAFRALESALPVMQDGRQARFLFLDEGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD+ +R G+ E + PL L+ +E T D RA L + + D Sbjct: 347 DPDTLVRKKGRDFIEARFNGAAPLETYLFDHLSEAMDVATMDGRARLSKLAAPFLQRLPD 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR----------HRDQKGPSQRLM 467 + Q + R + ++ P Sbjct: 407 GVFKELMYQDLARRTGIDLDSLKRLQAPPPTPEQRPTSGPVMAESELTPPPFDAPPLEDG 466 Query: 468 QSSLVKGKLSKKPSLREA--------------ALLLTLINHPAILQEQYQELADIRYDNN 513 + + S E LL + P + ++ + + Sbjct: 467 DWEPTGQQFDEAESNAERTGPALDPRVHSAVQRLLGLTVLKPVLAKD-LDTGELVDGSHE 525 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 +L L L + E + G+ L +G + +A + Sbjct: 526 DL-TLLRELANHIHENPQISSAALLGYWYGTSDGQRLAD------YSGRETLIEDAGLDA 578 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + G + +++ L+ + ++ + + + L + Q+ ++ Sbjct: 579 LFTGLLDQVRNHRQAVSLNERLRALKAK-----PFADLDTDEK--QELMAITRQLRTLKG 631 >gi|255282435|ref|ZP_05346990.1| DNA primase [Bryantella formatexigens DSM 14469] gi|255267019|gb|EET60224.1| DNA primase [Bryantella formatexigens DSM 14469] Length = 590 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 150/617 (24%), Positives = 264/617 (42%), Gaps = 40/617 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++++ I ++I YV R+ + Y+ CPFH EK+ SF + K Sbjct: 1 MYYSEELVEEVRSRNDIVDVISGYVRLQRKGS-----SYFGLCPFHSEKSASFSVSREKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118 YYCF C G+ +FL +F E+++ LA AGV LP + ++ +++ +++ ++ Sbjct: 56 MYYCFGCGAGGNVFTFLMEYEHYTFPEALRVLAERAGVQLPEQEMNEEMRREQSLRSRIL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L ++A +F++ L+ YL +R + I F LGYA L +L+ K Sbjct: 116 ELNKMAAKYFYYQLRQEGGAHAMRYLKDRQLSDETIHHFGLGYANKYSDDLYRYLKGKNI 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E + ++GL+ D YD+F NR+IFPI G+VI FGGR + KYLNSPE Sbjct: 176 PDELLAQSGLM-QVDEKRGMYDKFWNRVIFPIMDVNGRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A +K +++ EGYMDV+SL QAG N V+SL Sbjct: 234 TVVFDKSRNLYGLNFARTARKK------------QLLVCEGYMDVISLHQAGFINSVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + ++L +D D+ G+RAA +AI L G + + +D Sbjct: 282 GTALTSQHASLIRRYTDEVILTYDSDEAGVRAALRAIPL---LAEAGVTARVLNMRPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G F+K I ++ ++ + P + + + + + Sbjct: 339 PDEFIKALGAEEFQKRIDDAQNSFLFETDILQQSYDMSDPSGKTAFYEAVAKKLVGFEQE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ R + +R ++S + Sbjct: 399 LERENYLEAVARRYGVSADSLRKMVNSIALKGMNFSR--------TEPVRSQTARQDKEP 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI +P++ + + + + + + LF + E P I Sbjct: 451 GILKSQKLLLTWLIEYPSLYEGARRFITPDDFTGEPYRTVAELLFEQY-EAGEKSPARII 509 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL------LS 592 + L + +A ++ + +L ++ L Sbjct: 510 NHFTDPEEQSKAAALFHSTLAVESEAEREKAFKETLQNIFLSSLERRRKELSPTDMAGLQ 569 Query: 593 RQKEEIEKQIAQVTAKG 609 + E +K++ ++ A Sbjct: 570 KLITE-QKRVREIAAAN 585 >gi|302386570|ref|YP_003822392.1| DNA primase [Clostridium saccharolyticum WM1] gi|302197198|gb|ADL04769.1| DNA primase [Clostridium saccharolyticum WM1] Length = 588 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 149/612 (24%), Positives = 272/612 (44%), Gaps = 32/612 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ + I ++I YV ++ +N Y+ CPFH+EK+PSF + +K Sbjct: 1 MRYSEEVIEEVRMKNDIVDVISGYVKLQKKGSN-----YFGLCPFHNEKSPSFSVSPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ L+F+ SF E+++ LA +GV LP + ++E +++ L+ Sbjct: 56 MYYCFGCGAGGNVLTFVMEYENYSFSEALKVLADRSGVKLPAAEYSKEAREQEDLRSALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F++ LKN + + + YL +R + I F LGY+ + L +L+ KG+ Sbjct: 116 EINKLAASYFYYQLKNPQGEAGYRYLRDRQLSDETITRFGLGYSNKTSSDLYRYLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + + GL+ ++D+F NR++FPI +VI FGGR + GE KYLNSPE Sbjct: 176 DDSLLKQTGLVTI--EERGTFDKFWNRVMFPIMDVNNRVIGFGGRVMGAGEP-KYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + +I++ EGYMDV+++ QAG N V+SL Sbjct: 233 TKLFDKSRNLYGLNYAR------------LSREKYILICEGYMDVIAMHQAGFTNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T +LL + + ++VL +D D G++AA +AI + G + + + +D Sbjct: 281 GTAFTSQHAQLLKRYTDKVVLTYDSDGAGVKAALRAIPI---LKEAGMSIRVLTMQPYKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF + I E+ +N P+++ E + + + Sbjct: 338 PDEFIKNLGAEAFRQRIEEARNSFLFEIDVLKKNYQMEDPEQKTEFYNQVARKLLEFPEA 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ + G + P + + + K + Sbjct: 398 LERENYLEAVSREYYINYEDLKRLVNRLGASLGPSVSI-----PREEGILKNQRKKEKED 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI +P + + ++ + K+ +F E ++ Sbjct: 453 GVKQSQRLLLTWLIENPLLFDKINGVISPDDFIEELYHKVARMVFDGHAAGTLNPAEILN 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + L L + + + ++ + E+ Sbjct: 513 HFIHDEDQYRAVAGLFHANLKESLDNEEQKKAFSETIMKVKKNSLDHASRHAAG--ILEL 570 Query: 599 EKQIAQVTAKGE 610 + I + A + Sbjct: 571 QNIIKEQAALKD 582 >gi|159039333|ref|YP_001538586.1| DNA primase [Salinispora arenicola CNS-205] gi|157918168|gb|ABV99595.1| DNA primase [Salinispora arenicola CNS-205] Length = 627 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 144/648 (22%), Positives = 250/648 (38%), Gaps = 43/648 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I+ +I + V G+ CPFHDEK+PSF+ + ++ Sbjct: 7 RIRDEDIALVRERTSIAEVISETVTLRSAG----GGNLKGLCPFHDEKSPSFNVSPARNV 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-----VDPKIEKKEKIQTD 116 +YCF C GD + FL SF+ESV+RLAA AG+ L P+ ++ + Sbjct: 63 WYCFGCGAGGDAIKFLMDAEHLSFVESVERLAARAGLQLRYVANDHTAPRSRPQQGQRQR 122 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ A +F+ L + +L RG D A E + G+APD L HLRQ+ Sbjct: 123 LVAAHAAAVEFYRAQLTTPGARPAREFLAHRGFDRAAAERYACGFAPDGWDLLTRHLRQQ 182 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GFS ++++ AGL + + DRFR RL++PIR G V+ FG R L + KYLN Sbjct: 183 GFSHDELVTAGLSRPARSG-SLIDRFRRRLLWPIRDLTGDVVGFGARKLFDDDDSPKYLN 241 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET ++ K LY A + K + +++VEGY DV++ AGV V Sbjct: 242 TPETPIYKKSHVLYGIDQAKREIAKQGK----------VVVVEGYTDVMACHLAGVPTAV 291 Query: 296 SSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA + +L + ++ I+ FDGD G +AA +A D + R Sbjct: 292 ATCGTAFGADHIGVLRRLLLDTDAVAGEIIFTFDGDAAGQKAALRAFDDDQRFVG---RT 348 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP G+ A L+ PLVD + +T D R E Sbjct: 349 FIAVSPDGMDPCELRLAKGELAVRDLVARREPLVDFALRHVINRHDLDTVDGRVEAMRRA 408 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + +KD++ R Y + + L + + + Sbjct: 409 APLVAKLKDREKRPEYVRKLAGDLGMEIEPVQRAVLAAAHAAPSGGALGNP------APR 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ + + E L + P + + + Y + + + + + Sbjct: 463 AAAAEPQADSPQLAVEREALKLALQAPVLAGPMFDAVEAAEYRHQVHVAVRAAVAAAGGA 522 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + + L ++ L ++ Y ++ Sbjct: 523 ATATGGAVWIESVRNACEDLTAQALVGELAVEPLRI------DGELDPRYVSVTMARLQW 576 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ + E++ +I ++ + L + + Q A Sbjct: 577 GAVTGRIRELKSRIQRINPVSNKDDYFAAFGELLSLEQHARALREQAA 624 >gi|90416499|ref|ZP_01224430.1| DNA primase [marine gamma proteobacterium HTCC2207] gi|90331698|gb|EAS46926.1| DNA primase [marine gamma proteobacterium HTCC2207] Length = 665 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 170/675 (25%), Positives = 276/675 (40%), Gaps = 70/675 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I +++ V + N Y ACCPFHDEK+PSF K F Sbjct: 4 RIPQTFIDDLLDRVDIVDVVNGRVPLKKAGKN-----YKACCPFHDEKSPSFTVAQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ L F+ F+ +V+ LA AG+ +P + K K + +L ++ Sbjct: 59 YYCFGCGAGGNALGFVMEFDRLDFLPAVEMLARNAGLEIPREAAQDPKISKQKDNLYSIL 118 Query: 122 EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +F L+ YL RG+ + +GYAP +L + + Sbjct: 119 TESDRYFRQQLRTHAGAASAVDYLKARGLSGQVAAQYGMGYAPPGWDNLLKAVGTDEQRT 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + E+G+L+ YD FR+R+ FPIR RG+ + FGGR L KYLNSPET Sbjct: 179 ALLNESGMLVIKPEEKKQYDFFRHRITFPIRDQRGRTVGFGGRVL-DDSKPKYLNSPETP 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG+ LY + A L+ +I+VEGYMDV++L Q + N V++LGT Sbjct: 238 VFSKGRELYGLYEARQKLK----------EIPCLIMVEGYMDVIALAQFEINNAVATLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE L+ +++ + IV CFDGD G +AA +A+D L + G F+ L GEDPD Sbjct: 288 ALTESHLQKIFRYTSEIVFCFDGDSAGRKAAARALDTALPEMRDGVSAKFLFLPDGEDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R GK F + I + PL + L+++ ++ +T D +A L IN I Sbjct: 348 TMVRQLGKQEFNEQIDRAQPLSEFLFEQLSDGIDSSTADGKARLSKVCAPQINRIPQGVF 407 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSK 478 R + + R + + + + + P+ + S S Sbjct: 408 RQLMLEELSSRTGISAENLRDYVATHKPPAGRGNASQQTHQPAHQPAPRLASQPTAHTSN 467 Query: 479 KPSLREA-----------------------------------ALLLTLINHPAILQEQYQ 503 + E L L+NHP + E + Sbjct: 468 QAPTDEFYSGPPPDDIYGDGDYEPYPETVAVRRSKIRLSPIKVLSALLVNHPQLA-EYVE 526 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQRLCERGFGELLKQLDRQVRDAGL 562 ++ + + L+ + + I R + QL + + + L Sbjct: 527 DIEMLSVSADPDMALFLKILALINSDPTCSKTSHIFARWQATYSDQTELQLLKTLAGSEL 586 Query: 563 WSATTEANIVDVRQ-------GYQQALALY---KRFRLLSRQKEEIEKQIAQV----TAK 608 D ++ + A ++ L + E+QI Q+ Sbjct: 587 HQPPKGTGRDDNQEFVDSLNHVIRDAFESLPPERKADFLLAAETLNERQIKQLWKIHMQL 646 Query: 609 GEAEKTAILISILHE 623 G+ + L + + + Sbjct: 647 GDDNQFVELKNKIKQ 661 >gi|325263836|ref|ZP_08130569.1| DNA primase [Clostridium sp. D5] gi|324030874|gb|EGB92156.1| DNA primase [Clostridium sp. D5] Length = 594 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 165/641 (25%), Positives = 275/641 (42%), Gaps = 53/641 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ + I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 5 MYYPEELIEEVRMKNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRGKQ 59 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +FL SFIE+V+ LA AGV LP + ++K ++ L+ Sbjct: 60 MYYCFGCGAGGNVFTFLMEYENFSFIEAVKFLADRAGVELPEMEYSKEAKEKAGLRATLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +VA +F+ LK + K + YL R + I+ F LGY+ L ++LR+KG+ Sbjct: 120 EINKVAAQYFYVQLKTEQGKTAYTYLTNRELSDDTIKAFGLGYSNKYSNDLFQYLRKKGY 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ I +AGL I+ D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 180 SEDLIRQAGL-INTDEKNGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + ++++ EGYMDV+SL QAG N V+SL Sbjct: 238 TAIFDKSRNLYGLNRAR------------TSRKPYLLICEGYMDVISLHQAGFTNAVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A+ + G + + +D Sbjct: 286 GTALTTGHASLIKRYVQEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G FEK I + + +N +P+ + + +D+ Sbjct: 343 PDEFIKNLGADEFEKRIGSARNGFLFSLEILAKNYDMESPEGKTAFFKETAKRLMGFEDE 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + + K A P+ R Q+ VK K Sbjct: 403 LERNNYIEAVAKSYRVSEESLQKLVT-------KTAISEGMAKPAARPKQAGGVKPK-ED 454 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + LL +I + + ++ + + + L+ + E P +I Sbjct: 455 GILVSQKILLTWMIEDVKLFGTIKRYISPEDFTEELYRTVADLLYEQY-EAGELNPAKIL 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E L + E + + ++ + L + + + + Sbjct: 514 NHFTEEEEHREAASLFH--------TKIRELSTREEQEQALKETILRVKGHSIDYRTMHL 565 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + L E ++ I+ IE Sbjct: 566 ------------DPTDMAGLQRLMEEKRKLDDIKKLHISIE 594 >gi|258652154|ref|YP_003201310.1| DNA primase [Nakamurella multipartita DSM 44233] gi|258555379|gb|ACV78321.1| DNA primase [Nakamurella multipartita DSM 44233] Length = 648 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 149/654 (22%), Positives = 251/654 (38%), Gaps = 56/654 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + I ++G+YV NA G+ CPFHDEKTPSF + ++G+ Sbjct: 3 RITDADRERVRDASRIEQVVGEYVAL----RNAGGGNLKGLCPFHDEKTPSFQVSPARGY 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CF C GD SFL + +F+ESVQRLA AG+ L +V+ + + + L+ Sbjct: 59 YHCFGCGKGGDVFSFLQEIDQLTFVESVQRLAERAGIALTLVEGGSSTRTERGTRPRLLA 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + A F+ L+ + +L ERG D A F GYAPD L + L +GFS Sbjct: 119 VNKAAAAFYAEQLQTPGAQVARDFLAERGFDLAAAAHFGCGYAPDGWDELVKALTGQGFS 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSP 237 E++ AG+ G D+F RL++ IR + G V+ FG R L + V+ YLN+ Sbjct: 179 VEELYRAGVARQGQR--GPIDQFHRRLLWSIRDAAGDVVGFGARRLFDDDRVQAKYLNTS 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ K + L+ A + K + +++VEGY DV+++ AGV V+S Sbjct: 237 ETPLYKKSQVLFGLDLAKREIIKQRK----------VVVVEGYTDVMAMHLAGVTTAVAS 286 Query: 298 LGTALTEYQLRLLWKL--------------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 GTA + + +L + +V FDGD G +AA KA D Sbjct: 287 CGTAFGDEHISVLRRYLLDSQAGPGTMRARDGMVVYTFDGDAAGRQAALKAFDSDQRFAA 346 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + G DP + G A +L+ + L + + ++ + Sbjct: 347 ---NTYVAIEKNGLDPCELRQAKGDEALRELVDSARNLFEFAIASAVGQFNLDSAEGGYA 403 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + IKD LR +++ + Q+ + + ++ P Sbjct: 404 ALNAGVPLVARIKDDLLRDQFAKTLAMHAGTDIQETRERVRRAAQTRAQAPDPEPRRRPE 463 Query: 464 QRLMQSS--------------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 R + L + E L + PA++ Y + Sbjct: 464 SRAGERQRSDPEPPPEPEPPDLDWPDPRDRELTAEREALKLALQQPALVASAYGMIEAEV 523 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + + + + L+ L + L E Sbjct: 524 FRAPAYATVHRAISALGGPSGDRSGPAWVDEVRGELPEGRLRSLVTE-----LAVERPEW 578 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 +V Y ++ R RQ++ + + + A G++ L + L E Sbjct: 579 LSDEVDARYAGSILARLAERQAIRQEKRLISALQRAEATGDSALARELNADLAE 632 >gi|117924114|ref|YP_864731.1| DNA primase [Magnetococcus sp. MC-1] gi|117607870|gb|ABK43325.1| DNA primase [Magnetococcus sp. MC-1] Length = 639 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 179/667 (26%), Positives = 295/667 (44%), Gaps = 68/667 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P F+ L + I ++I + + ++ N + CPFH EK+PSF N KGFY Sbjct: 4 FPDTFLDQLKERVDIVDVIERQLPLKKQGRN-----WIGLCPFHHEKSPSFSVNQEKGFY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119 CF C GD + F+ G F E+++ LAA AG+PLP +P + ++ + L Sbjct: 59 KCFGCGASGDAIKFVQQTRGIPFEEAIRELAAQAGLPLPQEQRQNPAQAQAKEKRDRLRA 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + FF L+ YL RG+ + I ++LG+AP +L + + Sbjct: 119 LLEESKRFFQGQLRAPNGGLARAYLQRRGLTAETISSYELGFAPAGWRNLLDFFGGGDSA 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAGLL+ + YDRFRNR+IFPI SRG+ IAFGGR L E KY+NSPET Sbjct: 179 IELMLEAGLLVKK-EDGSVYDRFRNRIIFPILDSRGRCIAFGGRVL-TDEKPKYINSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L++K + LY A R + ++VEGYMD + L + + V++LG Sbjct: 237 PLYNKSEVLYALNRAQE----------RWSRGEMALVVEGYMDAVMLAEHHLTGTVATLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+TE L+LLW+ + RI+ CFDGD G RAA++A++ L L + F+ L GEDP Sbjct: 287 TAVTEQHLKLLWQRTNRIIFCFDGDAAGRRAAWRALERGLQGLQADRHMQFLFLPEGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS ++ G F++ + + ++ K E TP+ RA ++ I + D Sbjct: 347 DSLVQKEGVQRFKERANGAYSPMQLMHKVMGEQLDLYTPEGRAAAVHRMRPLITSVADPV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYI----TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR Y+ + +L + + + W + + + P + + + Sbjct: 407 LRQLYADDLGHKLGGVSGAQLLYGGESPAPATPAWPGSTPYGEGHAPRFPVRSGGSRRAE 466 Query: 476 LSKKPSLR-----------------------------EAALLLTLINHPAILQEQYQELA 506 R E ALL L+N P +L E + L+ Sbjct: 467 WRNTIKNRGGWQPAQKPSWEQEVSSLLLGGEVRGRDFEQALLAQLLNDPRLLLEHQETLS 526 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I+ N +L +L + L + ++ +L + +L +++ Sbjct: 527 TIQLKNTQLNQLLTELLEVGPDLQHLDQPFSIDQLKDGQSAQLARRI-----------LL 575 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E +D + + R L ++ + +I Q G AE L ++ Sbjct: 576 EEQTPLDDPARELEGCMKTDQLRQLQQEMVAVNARIRQ----GNAETFKKDFDHLMQLKK 631 Query: 627 QIHQIES 633 + +++ Sbjct: 632 DMDRLKQ 638 >gi|294812505|ref|ZP_06771148.1| DNA primase [Streptomyces clavuligerus ATCC 27064] gi|326441041|ref|ZP_08215775.1| DNA primase [Streptomyces clavuligerus ATCC 27064] gi|294325104|gb|EFG06747.1| DNA primase [Streptomyces clavuligerus ATCC 27064] Length = 637 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 145/658 (22%), Positives = 267/658 (40%), Gaps = 48/658 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D IK + +PI ++ +Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDIKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLTFSEAVERLAGTAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +VA ++ L + +L ERG D A F +GY+P L LR KGF Sbjct: 120 AHKVAAQYYAEQLENSPEAAAGRTFLAERGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S++++ +GL + DRFR RL++PIR G V+ FG R L + ++ KYLN+P Sbjct: 180 SDKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDISGDVVGFGARKLHESDNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + + +S ++VEGY DV++ AGV +++ Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIVR----------TSTAVVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L + ++ FDGD G +AA +A + + + Sbjct: 288 CGTAFGGDHIKILRRLLMDHATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A E L+ PL + ++ + + P +A + Sbjct: 345 TPGGMDPCDLRLAEGDAAVEALVGSRTPLFEFAMRQIVQRHNLENPAGQAGALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK+ +++ + + + L +++ + W ++ R R Sbjct: 405 AKIKNPAIQHGSAVQLAGMIGILDTQFVVKRVAQLARWARDRGGRGPAPGDTRRRGPQPP 464 Query: 473 KGKLSKKP------------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + P E LL + HP ++ + + + Sbjct: 465 QQATAPAPAGGPALHLRSPAHRTERELLKLALQHPELVSPAFDAYGMDEFTAAPYAAVRQ 524 Query: 521 FLFSDFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + EQ R+ E + ++ L ++ + + T + + Y Sbjct: 525 TVADAGGTEQGLSDGPGYLARVREAAPNDTVRALVTELAVEAIHARTVD-------EIYA 577 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R R + R+ EI+ + ++ + E+ + + + L + + + A Sbjct: 578 GVQLVQVRLRAVDRRVLEIQGTLTRLGQHADPERFSAVQNELWVLQQYAQSLRTHGAA 635 >gi|293394294|ref|ZP_06638594.1| DNA primase [Serratia odorifera DSM 4582] gi|291423272|gb|EFE96501.1| DNA primase [Serratia odorifera DSM 4582] Length = 582 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 288/630 (45%), Gaps = 53/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVETIEELATMHGLEVPYEAGTGPTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ S+ K+ YL +RG+ I F +G+AP + + + S Sbjct: 119 LMEQLSAFYQQSMHQPNGKQARDYLQQRGLSDDVIRHFAIGFAPAGWDNALKRFGRDPDS 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RAALNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EVFHKGRQLYGLYEAQQSHPTLQR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDNVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR GK AFE+ + ++ PL L++ ++PD RA+L I + + Sbjct: 347 DTLIRKEGKQAFEQRMEQAQPLSTFLFESLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + + K + Sbjct: 407 LRLYLRQQLGSKLGLLDDNQLDKLMPKQAENGNSYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L + L+ L + Q ++ + Sbjct: 452 -----RILIGLLVQNPHLATLVP-ALEGLEQTRQPGLPLFVELVQTCLSQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + F + L+ L + + E +D ++ L ++ E + Sbjct: 506 LYRDNKFSQQLETLATW--NHMIIEDMVEQTFLDTLASLYDSV--------LEQRLETL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 IAQ G + + + L++V + + Sbjct: 555 --IAQARTHGLSPEEREEVRSLNQVLAKKN 582 >gi|238762466|ref|ZP_04623437.1| DNA primase [Yersinia kristensenii ATCC 33638] gi|238699451|gb|EEP92197.1| DNA primase [Yersinia kristensenii ATCC 33638] Length = 582 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQTANQAREYLKRRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKLAENTNSYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559 >gi|330448777|ref|ZP_08312424.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492968|dbj|GAA06921.1| DNA primase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 586 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 161/616 (26%), Positives = 274/616 (44%), Gaps = 53/616 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DL+ I ++I V ++ N + ACCPFH+EKTPSF + K F Sbjct: 4 KIPRSFIDDLISRHDIVDVIDARVKLKKQGKN-----FGACCPFHNEKTPSFSVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C V G+ L F+ F+++++ LA+ G+ +P + K + + Sbjct: 59 YHCFGCGVHGNVLDFVMEFDRLDFVDAIEELASQLGLEVPRENDGNTTHRGPKAADKRNY 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ + F+ L+ + YL RG+ ++ F +G+ PD +R + Sbjct: 119 YELMGQVSQFYQSQLRTKEGEIAVDYLKGRGLSGEIVKKFSIGFIPDQWDMVRSRFGRDN 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S++ ++ G+LI+ DN YDRFR R++FPI RG+VI FGGR + + KYLNSP Sbjct: 179 ESQKALVNTGMLIENDNGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVI-GDGTPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY + L ++ + I++VEGYMDV++L Q GV V+S Sbjct: 237 ETDIFHKGRELYGLYEVLQTYREPEK----------IMVVEGYMDVVALAQFGVDYAVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGT+ T ++ L++ + +V C+DGD G AA++A++ L +L G ++ F+ L GE Sbjct: 287 LGTSTTGDHIQSLFRQTSTVVCCYDGDRAGRDAAWRAMEQALPYLTDGRQLKFMFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS IR GK AFE + +++PL + L+ + + +A+L I+ + Sbjct: 347 DPDSCIRAEGKDAFELRVNQAMPLSEFLFNSLMLQVDTTSREGKAKLSTLAVPLIDKVPG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + + L + + + K K Sbjct: 407 GTLRLYLRELLGKNLGLPDEAQLQQLISMHGKESKPVGQVQIKRTPM------------- 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPE 535 ++ LI HP + + E +DN EL L + Sbjct: 454 -------REVIALLIQHPNFVTQL--EFDMSAFDNIELSGLNLLLSIVDKCRNNPNISTG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + ++ +L W + + + A+ + +Q Sbjct: 505 QLLEHWRGTKNEAMMAKLAA-------WELPLSKDEDNSLDVFLDAMDKIIDQ-CVEQQI 556 Query: 596 EEIEKQIAQVTAKGEA 611 E+++ + + + Sbjct: 557 EQLQTKSRTIGLSVDE 572 >gi|291520419|emb|CBK75640.1| DNA primase [Butyrivibrio fibrisolvens 16/4] Length = 569 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 148/588 (25%), Positives = 247/588 (42%), Gaps = 37/588 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + I+++ I ++I QYV+ ++ + Y+ CPFH+EKT SF + K Y Sbjct: 4 YSDEIIEEVRTRTNIVDVISQYVNLQKKGSQ-----YFGLCPFHNEKTGSFSVSPQKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C G+ SFL A +F E+V+ LA GV LP + ++ ++ L + Sbjct: 59 YCFGCGAGGNVFSFLMAYENMTFKEAVEELAPKCGVTLPQREMTAQERQRADKRSKLFEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +++ L++ K+ Y R + + F LG SL ++LR KG+ + Sbjct: 119 NKEAAAYYYKLLRSDVGKQAMDYFTGRQLSVETMHKFGLGCTSKYSDSLYKYLRGKGYDD 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + GL I D +D+F NR +FPI + G+V+AFGGR + KYLNSPET Sbjct: 179 NILKDCGL-ITIDEKRGGHDKFWNRAMFPIFDANGKVVAFGGRVM-GDGEPKYLNSPETE 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K K L+ + A + IL EGYMDV+SL QAG N V+SLGT Sbjct: 237 IFNKSKTLFGLYFARKTRR------------EQFILCEGYMDVISLHQAGFDNAVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE +L + + L +D D G +AA +AI + G + +S +DPD Sbjct: 285 ALTEGHAGILKRYVKDVYLSYDSDGAGQKAALRAIPI---LKNAGISCRIINMSPYKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH-LKNCINHIKDQK 419 FI+ G +EK I + + P+++++ + + + Q Sbjct: 342 EFIKNLGAEEYEKRIQNAENSFMYQVRMLQNKFDMTDPEKKSDFQKEAARMIVTEFPTQL 401 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y++++ + G+ R QR Sbjct: 402 ERENYTESVAAKFNIPKDALAKYILELGQSGITAKRDSGSAEDHQR-----KAFKPKDDG 456 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + + LL ++ +PAI + + +++ + +F E I Sbjct: 457 MKMSQRLLLTWIVENPAIFPKISPYVQPEDFEDGVYHTVADEVFKYCNEGNPVDTARIVD 516 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + L + D+ + ++ L KR Sbjct: 517 LFMEEEERKTVAALFNTSVGEL-------TDNSDLSKALKETLLRIKR 557 >gi|167758409|ref|ZP_02430536.1| hypothetical protein CLOSCI_00749 [Clostridium scindens ATCC 35704] gi|167664306|gb|EDS08436.1| hypothetical protein CLOSCI_00749 [Clostridium scindens ATCC 35704] Length = 591 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 158/635 (24%), Positives = 269/635 (42%), Gaps = 52/635 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSDEVIEEVRSRNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSQQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+++ LA AGV LP + + + + L+ Sbjct: 56 MYYCFGCGAGGNVFTFLMEYENYSFVEALRYLADRAGVELPEQEYSKEAKARADTKAILL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A +F+ LK ++ + YL R + I+ F LGYA L ++LR KG+ Sbjct: 116 EINKAAAQYFYAQLKGSQGAQALSYLKNRELGDDTIKAFGLGYANKYSNDLYKYLRSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E I +AGL I D +YD+F NR++FPI + +VI FGGR + KYLNSPE Sbjct: 176 QDEMIAKAGL-ITVDERQGAYDKFWNRVMFPIMDANSRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + +L EGYMDV+SL QAG N V+SL Sbjct: 234 TMIFDKSRNLYGLNRAR------------STKKPYFLLCEGYMDVISLHQAGFANAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +AI + G + + +D Sbjct: 282 GTALTPGHASLIKRYVQEVYLTYDSDEAGTKAALRAIPI---LRDVGITARIIRMEPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + +N ++P+ + + + + ++ Sbjct: 339 PDEFIKNLGAEAFEERIGKARNGFMFSLEILEKNYDMHSPEGKTDFMKEVARRLAQFDEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ F+ + A P +R + K + Sbjct: 399 IERGNYIEAVAGAYHVGFEDLRKLVG-------RMAIQTGLAKPVERPKSTQGKKKEKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL L + A+ ++ + + + + + L+ + E+ P I Sbjct: 452 GILKSQKILLTWLTSDEAVFRQIEKYITPADFSEGIYRTVAQLLYEQY-EKHDVNPARIM 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + L + E ++ Q + + EE Sbjct: 511 NHFTDEEEHREVASLFH--------TKIKELTTAKEQEKALQETVIRIKNHS----IEEA 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 K + KG + L ++ ++ Sbjct: 559 TKMLDPTDIKG--------LQQLMNAKRELQDLQK 585 >gi|21674406|ref|NP_662471.1| DNA primase, putative [Chlorobium tepidum TLS] gi|21647588|gb|AAM72813.1| DNA primase, putative [Chlorobium tepidum TLS] Length = 625 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 174/639 (27%), Positives = 276/639 (43%), Gaps = 38/639 (5%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I ++ I +++ YV + A PF EKTPSF + K Y CFS Sbjct: 2 IDEVRQSTDIVDVVSDYVRLHPSGR-----HFKALSPFTQEKTPSFIVSPDKQIYKCFSS 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLIEVATD 126 G+ +F+ + SF E+V+ LA AG+ + K ++K+K + + A Sbjct: 57 GKGGNVFTFVMEMEKVSFPEAVEMLAKRAGIDIGKYQQQKAKEKDKREASQFDTLRWAAK 116 Query: 127 FFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 FH +L++ Y +RG++ I F LG+AP+S L + G E ++ Sbjct: 117 LFHGTLQSEAGSAALAYLTGKRGLEPGTIRRFGLGFAPESWDHLLHAAERDGAPVEHLVS 176 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHK 244 GLL T YD FRNR+IFPI + GQV FGGRTLS E+ KY+NSPE+ F K Sbjct: 177 LGLLTRHPKRNTLYDTFRNRIIFPILTVGGQVAGFGGRTLSNDAETPKYINSPESAFFEK 236 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 K LY A N +++ ILVEGYMDV+++ QAG N V+S GTALT Sbjct: 237 SKLLYGMHAAKNEIRRQ----------ETAILVEGYMDVIAMHQAGFTNTVASCGTALTR 286 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 YQ ++L + + R++ +DGD+ G ++ ID++L G V+L EDPDSFIR Sbjct: 287 YQAKILKRYTSRVLFLYDGDNAGKKSMLAGIDILLSE---GLTPWVVMLPGNEDPDSFIR 343 Query: 365 CYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 YGK AF +L E D + + +PD ++ + I I D + Sbjct: 344 NYGKEAFLGELESEKSSFQDFQLRCYQDAGWMESPDTASKAISAMTRSIALIADPVQKEL 403 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + +L Q + + + P+ + + S+ Sbjct: 404 YIDELSKKLDLSRQTLREVMAASDTGGSTRESRQRRSEPAPQPLA-------RQAPLSVT 456 Query: 484 EAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIH 538 E L LI +L + ++ Q ++S L F E +I+ Sbjct: 457 ERTFLEALIESTFYGNEVLDFAASHESMFHLEHPAAQTIFSHLVRRFREMNDRDGHLDIN 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQK 595 + G + L + + TT ++ Q ++ L+ + + +L + Sbjct: 517 SEISSIGMEDA-SNLAFDILFRLPVNETTRLTPAELEQHARRCLSHFLVAVKALVLEPLQ 575 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +E +K IAQ+ + + L L E + Q +E + Sbjct: 576 KEKQKIIAQLQSATSTHEQERLSRELLEHNKQFRAMEQE 614 >gi|317122933|ref|YP_004102936.1| DNA primase [Thermaerobacter marianensis DSM 12885] gi|315592913|gb|ADU52209.1| DNA primase [Thermaerobacter marianensis DSM 12885] Length = 713 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 152/548 (27%), Positives = 240/548 (43%), Gaps = 32/548 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++ + I +IG+YV R +Y A CPFH E+TPSF + +K Sbjct: 3 RLDEHVVDEIRQRLDIVEVIGEYVPLRRAGR-----EYVALCPFHQERTPSFTVSPAKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF C V GD +F+ G +F E+V LA AGV LP P + Q L R Sbjct: 58 FYCFGCQVGGDVFTFVMKKEGWTFPEAVAELARRAGVTLPERPLSPGQRRARDRQEQLAR 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++++A F +L++ + YL+ERG+ + + LGYAP L L+++G Sbjct: 118 VLDLAAALFRQALRSPAGEAARTYLEERGLPPAIWDRYGLGYAPAGWDGLVRALQKRGVP 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++EAGL YDRFR+RL+FPI RG+V+ FGGR+L G+ KYLNSPET Sbjct: 178 PALMVEAGLA-QARPGGGYYDRFRHRLMFPITDPRGRVVGFGGRSL-DGQEPKYLNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN-VVSSL 298 LF K + Y A L+ + ++VEGYMD +++ +AGV V+SL Sbjct: 236 PLFSKRRLWYGLDWARPRLR----------ETGTAVVVEGYMDAIAVDRAGVGYAAVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+L+E Q+ LL + ++++ +D D G RA + ++L G V L G D Sbjct: 286 GTSLSEEQVELLARYVQQVIIAYDADAAGQRATLRGLEL---FADAGVEVRVAQLPPGRD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R G A +++ ++P+V+ +++ TP RA L + ++ Sbjct: 343 PDDVVRREGPDALRRVLDAAVPVVEYRFRQVMAEVDTATPRGRARAAAELAPWLARVRHP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW-----KKNARHRDQKGPSQRLMQSSLVK 473 R Y + L E R + R + R + Sbjct: 403 VERGEYVRRYALSLGLEEGVLWQEVRRAARGLRRAASQAAGRPGGNNVQAVRHTNRRVPV 462 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ + E L+ + HP L + + L+ Sbjct: 463 EEVPAGIARAERGLVAASLFHPEWRDYIAARLEPGDWVTPAHRLLF----ELAGTMDPVD 518 Query: 534 PEEIHQRL 541 P + RL Sbjct: 519 PGRMLSRL 526 >gi|153853335|ref|ZP_01994744.1| hypothetical protein DORLON_00731 [Dorea longicatena DSM 13814] gi|149754121|gb|EDM64052.1| hypothetical protein DORLON_00731 [Dorea longicatena DSM 13814] Length = 597 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 266/627 (42%), Gaps = 47/627 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 6 MYYSDEIIEEVRSRNDIVDVISTYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +FL +F+E+++ LA AGV LP + +++ + L+ Sbjct: 61 MYYCFGCGAGGNVFTFLMEYENYTFVEALKYLADRAGVELPEEEYSREAKERADTRAILL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A +++ LK++R Y +R + I+ F LGY+ L +L+ KG+ Sbjct: 121 EINKAAAQYYYIQLKSSRGAVGLEYFKKRKLSDETIKAFGLGYSNKYSDDLYRYLKSKGY 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ I +AGL I D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 181 KDDMIAKAGL-ISIDEKNGVYDKFWNRVMFPIMDVNSRVIGFGGRVM-GDAKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + +L EGYMDV+SL QAG N V+SL Sbjct: 239 TMIFDKSRNLYGLNRARR------------TKKPYFLLCEGYMDVISLHQAGFTNAVASL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D G RAA +A+ + G + + +D Sbjct: 287 GTALTPGHAALIHRYVQEVYLTYDSDGAGTRAALRAMPI---LRDAGITAKIIRMEPYKD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I + + + ++ N+P+ + E + +++ Sbjct: 344 PDEFIKNLGAEAFEERIASARNVFMYSLEVLEKDYDMNSPEGKTEFMKETARRLTQFEEE 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ F++ K + K + + K K Sbjct: 404 IERNNYIEAVAKVYHVGFEELRKLV------GKMAVQTGLAKPAERPREIQNNRKNKKED 457 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + LL LI I + + + + +K+ L+ + E+ P +I Sbjct: 458 GILVSQKVLLTWLIESEEIFHQIEKYITPEDFSEGLFRKVAELLYEQY-EKHEANPAQIM 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + L + E V ++ Q L + + + + Sbjct: 517 NHFTDEEEHREVAGLFH--------TKIKELTTVKEQEKALQETILRVKEHSIEEATKNL 568 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 + + L++ ++ Sbjct: 569 --------DPTDIQGLQRLMNEKRKMQ 587 >gi|238782837|ref|ZP_04626866.1| DNA primase [Yersinia bercovieri ATCC 43970] gi|238716260|gb|EEQ08243.1| DNA primase [Yersinia bercovieri ATCC 43970] Length = 582 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 173/598 (28%), Positives = 282/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SL + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLNGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQADNTNTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559 >gi|111018224|ref|YP_701196.1| DNA primase [Rhodococcus jostii RHA1] gi|110817754|gb|ABG93038.1| DNA primase [Rhodococcus jostii RHA1] Length = 644 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 135/651 (20%), Positives = 240/651 (36%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 4 RIPDRDVAAIRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CF C GD SFL + SF+E+V++LA + + ++ L+ Sbjct: 60 YHCFGCGEGGDVYSFLQKIDHISFVEAVEQLADRLNYTISYEGGGTSVQRDRGTRSRLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L+ + YL ER D+ A + F GYAPD L +HL KGF Sbjct: 120 ANAAAQEFYSARLQEPDAQAARDYLTERNFDAQAAQQFGCGYAPDGWDILTKHLLGKGFD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIR+ G VI FG R L +++ KY+N+P Sbjct: 180 VKELEAAGLSK--AGRRGHIDRFHRRLLWPIRNLSGDVIGFGARKLFDDDTMPGKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K + L+ A + K ++VEGY DV+++ AGV+ V++ Sbjct: 238 ETMLYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAA 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353 GTA E L +L +L + ++ + Sbjct: 288 CGTAFGEDHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP + G A L+ P+ + + K T + R E + Sbjct: 348 PEGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470 IK+ LR Y+ + + + + + + R P ++ + Sbjct: 408 QIKEATLRDSYAVQLSGWVGWDDIAAVRQRVRDEARKRASTRGSLPAPPKKKAARDEDQD 467 Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 L + + + + L + +PAI + L + + + + Sbjct: 468 TPQLPVGLTRPRPNDPTLWAQREALKGALQYPAIAGTVFDSLPVETFTHPTYVVIRESMI 527 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + L ++ L D Y + Sbjct: 528 ASGGTSAGLGGGEWVDAVSRGVDDVTAASLVSELAVEPLP------AEEDTVPRYISGVI 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + Q E++ ++ +++ +++ L+ L + + Q Sbjct: 582 ARLQEVWVGEQVAELKSKLQRISPATASDEFHSLLGDLVALEQYRRSLLDQ 632 >gi|333027298|ref|ZP_08455362.1| putative DNA primase [Streptomyces sp. Tu6071] gi|332747150|gb|EGJ77591.1| putative DNA primase [Streptomyces sp. Tu6071] Length = 637 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 144/661 (21%), Positives = 267/661 (40%), Gaps = 54/661 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI +++ +Y+ G+ CPFHDEK+PSF + +KG Sbjct: 4 RIKDEDVKAVRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLA AG+ L + ++ + LI Sbjct: 60 FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTQQRGERIRLID 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A ++ L + +L ERG D A F +GY+P L +LR +GF+ Sbjct: 120 AHRAAAKYYEEQLAGPEAEIGRKFLAERGFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++I +GL DRFR RL++PI+ G ++ FG R L + ++ KYLN+PE Sbjct: 180 DRELITSGL-SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + ++ R ++VEGY DV++ +GV V++ Sbjct: 239 TPVYRKSQVLYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATC 288 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 289 GTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP G+ A +L+ +PL + ++ TP RA + Sbjct: 346 PDNMDPCDLRLAKGEQAVAELVEPRVPLFEFALRQIVSRYDLETPAGRAAALDEAAPVVA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 +K+ LR+ + + L Q + + + + R + + P+ Sbjct: 406 SVKNVALRHAVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPATATS 465 Query: 468 QSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + G LR E LL + P ++ + + + Sbjct: 466 GAPQRPGNSGPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQA 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + ++ L + D + + TE + +R+ Sbjct: 526 IADAGGAEEGVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDE 574 Query: 582 LALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + ++ R + R+ E++ +V+A+G+ + A + S L + ++ Q A Sbjct: 575 IYASEQLVRVRVRAVQRRVTELQGTFTRVSAQGDQARAAEVQSELWVLEQYGRALQQQGA 634 Query: 637 M 637 Sbjct: 635 A 635 >gi|300718454|ref|YP_003743257.1| DNA primase [Erwinia billingiae Eb661] gi|299064290|emb|CAX61410.1| DNA primase [Erwinia billingiae Eb661] Length = 581 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 174/631 (27%), Positives = 283/631 (44%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATLYGLEVPYESGTGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ +F+ +L ++ YL RG+ I+ F +GYAP + + + Sbjct: 119 LMGGLNEFYQQALSQSQSSGAREYLANRGLSDAVIKHFSIGYAPAGWDNALKRFGRNQDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQKNHPEPAK----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTPEHIQLLFRTTDTVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ +PD RA+L I + + Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSAFLFDSLLPQVDLRSPDGRAQLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + K + Sbjct: 407 LRIYLRQELGNKLGILDDSQLDKLMPKLGEKARPPQQPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ LI +PA+ + L L+ L S V ++ Sbjct: 452 -----RILIGLLIQNPALATTVPPLEGLEASDLAGFP---LFVELVSTCVAHPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + F + L+ L + D + Q L R+ EE Sbjct: 504 LELYRGTNFSQSLETLATW----------NHMIVEDEVETMFQDSLASMYDAALERRLEE 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ G +E+ ++ + + Sbjct: 554 L---IARDRTHGLNSEERREFWTLSQALAKK 581 >gi|291550177|emb|CBL26439.1| DNA primase [Ruminococcus torques L2-14] Length = 592 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 157/641 (24%), Positives = 273/641 (42%), Gaps = 51/641 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSEELIEEVRSRNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+V+ LA AG+ LP + ++K +++ ++ Sbjct: 56 MYYCFGCGAGGNVFTFLMEYENFSFVEAVKFLADRAGIELPEMEYSKEAKEKADLKSTIL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK R + + YL R + I F LG++ L ++LR+KG+ Sbjct: 116 EMNKLAAKYFYVQLKLERGSQAYSYLKNRELSDETITAFGLGFSNKYSDDLYKYLREKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ I +AGL I+ D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 SEDLIRQAGL-INTDERQGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + + +L EGYMDV+SL Q+G N V+SL Sbjct: 234 TVVFDKSRNLYGLNRAR------------TSRKPYFLLCEGYMDVISLHQSGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G RAA +A+ + G V + +D Sbjct: 282 GTALTAGHAALIKRYVQEVYLTYDSDEAGTRAALRAVPI---LREAGISAKVVRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G +EK I + + + N+P+ + + + + +D+ Sbjct: 339 PDEFIKNLGAEEYEKRIHAARNGFMFSLEMLEKQYDMNSPEGKTDFFKEVSRRLLEFEDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ S K + ++ K + Sbjct: 399 LERNNYIEAVA------TAYRVSRESLEKMVAKMAVNAGMARPVARPKRAEGSEKKQKED 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + ALL +I+ + + Q ++ + + + + L+ + P +I Sbjct: 453 GILTSQKALLTWMIDDDRLFDQISQYISPGDFTESLYRTVAELLYEQRKQG-ALNPAKIL 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E L + E + R+ Q L + + Q + Sbjct: 512 NHFTEEEDHREAASLFN--------TRIKELRTKEEREQALQETILRVKSYSIEHQTMNL 563 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + L E ++ +++ I+ Sbjct: 564 ------------DPTDMRGLQHLMEEKRKLENLKNLNITIQ 592 >gi|229180571|ref|ZP_04307913.1| DNA primase [Bacillus cereus 172560W] gi|228602995|gb|EEK60474.1| DNA primase [Bacillus cereus 172560W] Length = 598 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 161/630 (25%), Positives = 276/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPTWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + S N + Q L +R R +K E Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLRRHRE-KLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|210615119|ref|ZP_03290450.1| hypothetical protein CLONEX_02664 [Clostridium nexile DSM 1787] gi|210150427|gb|EEA81436.1| hypothetical protein CLONEX_02664 [Clostridium nexile DSM 1787] Length = 591 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 154/641 (24%), Positives = 280/641 (43%), Gaps = 52/641 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + D I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYFSEDLIEEVRQKNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C V G+ +F+ SF+E+ + LA AGV +P + +++ ++ L+ Sbjct: 56 MYYCFGCGVGGNVFTFIMEYENYSFVEAFKMLAERAGVDIPEVEYSKEAKERADLKATLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK + K H YL RG+ I F LGY+ L +L+ KG+ Sbjct: 116 EINKLAAKYFYAQLKTEQGKLAHTYLTGRGLSEETITAFGLGYSNKYSDDLYRYLKTKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGL I D ++D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 KDELLVKAGL-ISVDERHGAHDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + + ++ EGYMDV+SL QAG N V+SL Sbjct: 234 TEVFDKSRNLYGLNRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G RAA +A+ + G + + +D Sbjct: 282 GTALTTGHASLIKRYVNEVYLTYDSDEAGTRAALRAMPI---LKEAGITAKIIRMEPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + + N+P+ + + +++ Sbjct: 339 PDEFIKNLGTEAFEERINKARNGFLFSLEILEKEYDMNSPEGKTAFHKEAAKRLTMFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ + +++ K A Q P++R Q++ + + Sbjct: 399 IERNNYIEAVAEKYRIGYEELKKLVG-------KMAIQMGQATPAERPKQTANREKQKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI + A+ + + + + + + L+ + E P ++ Sbjct: 452 GNLKSQKILLTWLIENEALFAQIKKYIVPEDFTKELYRTVAEILYEQY-EAGEVNPAKVM 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + +L + E + ++ + + ++ + Sbjct: 511 NHFTDEEEHREVAELFH--------TKIRELTTKEEQEKALKETIIRVKYNSIEF----A 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 K + G + L E + ++ I+ Sbjct: 559 TKMLNPTDIVG--------LQRLMEAKKSLQDLQKMHISID 591 >gi|206971308|ref|ZP_03232259.1| DNA primase [Bacillus cereus AH1134] gi|206734080|gb|EDZ51251.1| DNA primase [Bacillus cereus AH1134] Length = 598 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPTWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|251791057|ref|YP_003005778.1| DNA primase [Dickeya zeae Ech1591] gi|247539678|gb|ACT08299.1| DNA primase [Dickeya zeae Ech1591] Length = 584 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 173/618 (27%), Positives = 288/618 (46%), Gaps = 50/618 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLDVPYEAGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ H+LK YL RG+ I+ F +G ++ + + G + Sbjct: 119 LMEQLSAFYQHTLKQPAGAPAREYLARRGLSDEIIQQFAIGCTLPGWDNVLKRFGRSGEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + +AG+L+ + + +YDRFR+R++FPIR RG+VIAFGGR + + KYLNSPET Sbjct: 179 QTTLTDAGMLV-TNENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ I +++PL L+ + +TPD R +L I + + Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSAFLFDSLLQQVDMSTPDGRTKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + K + Sbjct: 407 LRLYLRQQLGHKLGLLDDSQLDRLLPKTAEQTSHYQPPRLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E + L D+ + +L+ L E + Sbjct: 452 -----RILIGLLVQNPRLSAEVPELALDDVEENKIAGLELFLTLVKTCNESPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLS 592 ++ E + + L+ L + + ++ ++ Q L +R LS Sbjct: 507 EKYRESKYRKQLETLAAWDHMIEEEELEEKFRISLAELYDQLLQQRMDTLIARERTHGLS 566 Query: 593 ----RQKEEIEKQIAQVT 606 ++ ++ + + Sbjct: 567 MNERKELWSLQLALTRKN 584 >gi|327440914|dbj|BAK17279.1| DNA primase [Solibacillus silvestris StLB046] Length = 609 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 152/636 (23%), Positives = 284/636 (44%), Gaps = 41/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + I ++I Y+ +R N Y+ CPFH E+TPSF + K Sbjct: 4 KIPEHVIEQIRSQSDIVDVISDYMQLTKRGRN-----YFGLCPFHGEQTPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-----KKEKIQTD 116 ++CF C G+ ++F+ + SF +++ +L+ AG+PL + + K + Sbjct: 59 FHCFGCGAGGNAITFVMDMEHLSFPDALIKLSQRAGIPLEMELSTDQSMSNSPISKKEQQ 118 Query: 117 LIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + A +F+HH L N + YL ERG IE ++G+A + +L L + Sbjct: 119 MREAHTFAVEFYHHILMNTEDGEPALNYLLERGFTREQIETHQIGWALPNWDTLSILLER 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234 KG+ E++ E+GL+I ++ + +DRFR R++FPIR G+ IAF GR L+ E KYL Sbjct: 179 KGYDPEEMAESGLIIRKESDDSYFDRFRGRIMFPIRDENGKTIAFSGRILNSDGEDAKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHK + LYN A ++K S +IL+EG++DVL+ QAG+ N Sbjct: 239 NSPETPIFHKSQVLYNLDKARASIRK----------SRQVILMEGFIDVLAANQAGIYNA 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+++GT+LT + L +L +I +C+DGD+ G AA +A + +V +L Sbjct: 289 VATMGTSLTPQHITKLKRLVQQITICYDGDNAGFEAAKRAAQM---LHQEQIKVEVAVLP 345 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD +IR +G+ AF+ +I + + + ++F ++ + + + Sbjct: 346 DKLDPDEYIRTHGQEAFKNQIIEKPHAYIAFMMMHAKRGKNFQFENDTLQYIQEVLETLK 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + R Y + + + + T+ K + + ++ L + Sbjct: 406 NNTSPTERDLYIRQLANETNISHEAISTQLRKMVADNVKEQKRDQKMVEEPTVL---LQR 462 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E+ LL +++ I+ + +E + + + E ++ L + E + Sbjct: 463 ERKKDATDRAESILLAHMLHDVNIVNKVLREGNNEPFIHEEYLSVFVRLIGFYEEYEMAD 522 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + ++ V DA L + ++ +Q R L Sbjct: 523 FHRFVEVLDDHDLRKI-------VMDAALLERDPDNGEAEIIDCLKQI-----EKRRLEL 570 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + E+++ + E + + + ++ +I Sbjct: 571 KIEQLKHDQKEAEKMHEHRRALEIAQQIINLNRKIK 606 >gi|30022371|ref|NP_834002.1| DNA primase [Bacillus cereus ATCC 14579] gi|218235617|ref|YP_002369100.1| DNA primase [Bacillus cereus B4264] gi|228960558|ref|ZP_04122207.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229129570|ref|ZP_04258540.1| DNA primase [Bacillus cereus BDRD-Cer4] gi|229152493|ref|ZP_04280685.1| DNA primase [Bacillus cereus m1550] gi|29897929|gb|AAP11203.1| DNA primase [Bacillus cereus ATCC 14579] gi|218163574|gb|ACK63566.1| DNA primase [Bacillus cereus B4264] gi|228631101|gb|EEK87738.1| DNA primase [Bacillus cereus m1550] gi|228653887|gb|EEL09755.1| DNA primase [Bacillus cereus BDRD-Cer4] gi|228799158|gb|EEM46126.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 598 Score = 369 bits (946), Expect = 1e-99, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSTMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|227543034|ref|ZP_03973083.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181256|gb|EEI62228.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51866] Length = 625 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 142/640 (22%), Positives = 246/640 (38%), Gaps = 36/640 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + + PI ++G+YV PF DEKTPSFH + G+ Sbjct: 5 RIPEEDIDYIRENTPIEEIVGEYVQLKPAGA----DSLKGLSPFKDEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++ FS GD SFL L +F E+V+ A G + +K + L+ Sbjct: 61 FHDFSSGEGGDVFSFLMKLEHLTFPEAVEYCADKIGYHINYQGGGTGTREKAGTRQRLVA 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A FF L+ +R YL ERG + F GYAP +L +HL + GFS Sbjct: 121 INAEAHRFFVEKLQEPEAERARAYLTERGFTAEHARHFGCGYAPGGWDTLTKHLLRMGFS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E++ AG+ DRF RLI+PI++ G VI FG R L + KYLN+PE Sbjct: 181 AEELEAAGVTS--MGRRGPIDRFHRRLIWPIKNLAGDVIGFGARKLFDDDKLGKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + ++VEGY DV+++ AG+ V+S Sbjct: 239 TMLYKKSKVLFGIDLAKRNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVASC 288 Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L+L+ +L I+ FDGD+ G +AA +A + Sbjct: 289 GTAFGEDHLQLIRRLMLDDRTFRGEIIYTFDGDEAGQKAAMRAFEGSQEFSG---SSFVA 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A LI +P+++ + K T + R + + Sbjct: 346 VAPGGMDPCELRQDKGDVALRDLIARRMPMLEFVVKTILGQYDVGTIEGRLQAVRRVVPM 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I I+D LR Y+ + + L + ++ A +G + + +++ Sbjct: 406 IGAIRDPALRSQYALQLSGWVGWLNEDELSRMVEDASRRPAAAPQVATRGTAPQPTPTTV 465 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + L + P + + EL + + + + + + Sbjct: 466 LPDPRDPALWP-QRESLKIALQAPDLAGASFDELDPEGFFHPVYRTIRDGIAAAGGASGG 524 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + +K L + + D + Y ++ Sbjct: 525 DGKAGWIAAITDAIVDPAVKNLVSALAVEEIR------TDADHFEAYMDGAFARLEEGVV 578 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + Q ++ +++ + E + S L + ++ Sbjct: 579 ANQISNLKATLSRTRPSDDPEAYNAMFSDLLVLEQVRQEL 618 >gi|228954577|ref|ZP_04116602.1| DNA primase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805234|gb|EEM51828.1| DNA primase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 598 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 273/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q + +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKTSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|88855012|ref|ZP_01129677.1| DNA primase [marine actinobacterium PHSC20C1] gi|88815540|gb|EAR25397.1| DNA primase [marine actinobacterium PHSC20C1] Length = 627 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 156/651 (23%), Positives = 257/651 (39%), Gaps = 49/651 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ +++++G YV + G CPFH+E++PSFH GFY Sbjct: 5 IRRNDIDEVRSRTNLADIVGDYVTLKSAGS----GSMKGLCPFHEERSPSFHVRPQVGFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +FL + SF E+V+RLA L D + ++ + Sbjct: 61 HCFGCGEGGDVFTFLQRMDHVSFSEAVERLAGRISYELHYEDGGAATDHGNRARILAANQ 120 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A+DFF L + +L ERG D A E F +G+AP L +HL GFS E+ Sbjct: 121 AASDFFVTQLATPEAEPGRAFLGERGFDQSAAERFGIGFAPRG-GVLTKHLNTLGFSSEE 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 ++ AGL I YDRFR RL++PIR GQ + FG R L + + KYLN+PET + Sbjct: 180 LVVAGL-IGKGERGEYYDRFRGRLVWPIRDVTGQTLGFGARRLLEDDKGPKYLNTPETPV 238 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HK + LY A + + S I++VEGY DV++ AGV V++ GTA Sbjct: 239 YHKSQVLYGLDLAKKDISR----------SKQIVVVEGYTDVMACHLAGVTTAVATCGTA 288 Query: 302 LTEYQLRLLWKLS-----------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 ++++ ++ ++ FD D+ G +AA +A + Sbjct: 289 FGVDHIKIVRRMIGDYDNADTTATGEVIFTFDPDEAGQKAANRAFAEEHRFAA---QTFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + S G DP G A +L+ P+ + +RE T + R Sbjct: 346 AVASDGLDPCDLRLKKGDGAVRRLVSTRKPMFEFKIRRELAVHDLETVEGRVAALRAAAP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+DQ L Y +++ L + + + R A + Sbjct: 406 VVAGIRDQALGIGYVRSVAGWLGMEPTEVQSAVNSAKRQGPSAAPAHAPSQQGSSGAPAD 465 Query: 471 LVKGKLSKKPSLR-------EAALLLTLINHPAIL-QEQYQELADIRYDNNELQKLWSFL 522 + LR E L+ ++ HP ++ E ++L I + + L + + Sbjct: 466 PQPEQGPSIMDLRTDASTRLERDALMAVLQHPDVVGDELIRKLTQIAFADGTLAVVRDAI 525 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 S + + F +KQL S D Y + Sbjct: 526 ASQVDRALQPGWASVVAEEVPQSFATFVKQL----------SVAPIPEREDRIPVYCVQV 575 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R L RQK E+ + ++ + + + L + + + Sbjct: 576 TTDLVERDLLRQKRELLGVLQRMDRESDPARYVQTQRDLMRIEAERRALRE 626 >gi|329114161|ref|ZP_08242923.1| DNA primase [Acetobacter pomorum DM001] gi|326696237|gb|EGE47916.1| DNA primase [Acetobacter pomorum DM001] Length = 612 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 292/630 (46%), Gaps = 33/630 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F+ +L PI++++G+ V R N + CCPFH EKTPSF+ D Sbjct: 1 MAIDSAFLDELRARTPIASVVGRRVKLARSGRN-----WKGCCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD +SF+ + G +F E+V+ LA+ AG+ +P + +++ L + Sbjct: 55 -FHCFGCGVHGDVISFVMQMEGKNFPEAVEELASSAGMEVPKDTRRTQEEVAHVRSLEDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + H+L + YL RG+ +E F LG+A + R L L KG + Sbjct: 114 LAATQEIWSHALYKPEGRAGLDYLLGRGLTRETLETFGLGWASEKRGDLVSALAPKGITL 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + EAGL+ + + F R+ FPIR +G++++FGGR L KYLN PET Sbjct: 174 DMMAEAGLMRVDEQGHPKGELFWGRVTFPIRDRKGRLVSFGGRIL-GDGQPKYLNGPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + L+ A ++ K V +++VEGYMDV++L QAG V+ LGT Sbjct: 233 VFSKRRLLFGLDRARAAVRAPRPKGVLAPD---LVVVEGYMDVIALHQAGFTGAVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QL LW++ +LCFDGD G RAA KA + L L + LL GEDPD Sbjct: 290 ALTPEQLEALWQVDRAPILCFDGDAAGRRAAVKAAETGLPLLKQDYSLRICLLPDGEDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G+ A ++ + PL ++L+ + + P+ERA L L I D+ L Sbjct: 350 SLVRTRGRQAVAEMFAAAQPLSEVLFDLLSAGANNPGPEERAALRRRLTEVAGLIPDKTL 409 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + DR F++ G + R P+ + + Sbjct: 410 ASEYRSTLLDRFFTTFRR--------GGGKWNGPQGRKANAPASVPGAVPVN----MDQT 457 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PEEIHQ 539 R+ +L L+ HP ++ E + L + E ++ + L E + ++ Sbjct: 458 RERQRLMLELLLLHPVLVPEVEEALCRLDLP-EEFAEVRALLLDLSAEGELPDNAAALYA 516 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597 L +G E ++ + R+ +SA +E++ D + + LL + +E Sbjct: 517 WLQAQGAEETIRAVVRES-----YSAMSESDAEDPAHTVASRTQWWHFYGLLYGPQFIQE 571 Query: 598 IEKQIAQV-TAKGEAEKTAILISILHEVHI 626 + ++IA+ G++ + L + L + Sbjct: 572 VNREIARFVEKGGDSAEWQRLQARLEAMER 601 >gi|225377780|ref|ZP_03755001.1| hypothetical protein ROSEINA2194_03431 [Roseburia inulinivorans DSM 16841] gi|225210364|gb|EEG92718.1| hypothetical protein ROSEINA2194_03431 [Roseburia inulinivorans DSM 16841] Length = 600 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 156/614 (25%), Positives = 257/614 (41%), Gaps = 24/614 (3%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + D I+++ I ++IGQYV ++ + Y+ CPFH+EKT SF + +K Y Sbjct: 4 FSDDIIEEVRSRNDIVDVIGQYVHLTKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF C G+ +F+ +F E+++ LA AGV LP + +K + + L+ + Sbjct: 59 YCFGCGAGGNVFTFMMQYENFTFGEAMEALADRAGVALPKQEYSAAQKREADKKQRLLEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L+N R K Y +R + ++ F LGY+ L +LR KG+ + Sbjct: 119 NKEAARYFYTLLRNDRGKHALAYFQKRELSEETMKKFGLGYSDQYSDDLYRYLRSKGYED 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + E+GL+ + YD+F NR +FPI +VI FGGR + KYLNSPET Sbjct: 179 EILKESGLVTIDERRGG-YDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NLY A +L EGYMDV++L QAG N V+SLGT Sbjct: 237 IFDKSRNLYGLNFAR------------TTKKPQFLLCEGYMDVIALHQAGFDNAVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT LL + + + L +D D G++AA +AI + G + + +DPD Sbjct: 285 ALTAGHANLLKRYTKEVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMRPHKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G A++ I + + + P+ ++ + + ++ Sbjct: 342 EFIKALGAEAYQDRIDHAENSFMFEIRILEQQYDMKDPESKSAFYHEVAKKLCSFTEKIE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA+ ++ Q YG + + Q +S K Sbjct: 402 RDIYVQAVAEKYMLPTQDLQRLVGKYGMQMEGIRKQPTQLKTGINEKNASARGIKKEDGM 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL LI + + + + +A + K+ LF F E P +I Sbjct: 462 KQSQKLLLTWLIENTGLYHKIKKYIAPKDFTEEIYHKVAEVLFQQFEESGEANPAKIVSM 521 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + L E + + +Q Y+ L + + Sbjct: 522 FPDEEAQKEIAALFNARIHEIESKEDREKALKETIIRIKQNSIKYRSGHLAPTDMAGLMQ 581 Query: 601 QIAQVTAKGEAEKT 614 + E EK Sbjct: 582 LVTDKRDLEELEKL 595 >gi|120404772|ref|YP_954601.1| DNA primase [Mycobacterium vanbaalenii PYR-1] gi|119957590|gb|ABM14595.1| DNA primase [Mycobacterium vanbaalenii PYR-1] Length = 649 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 136/654 (20%), Positives = 251/654 (38%), Gaps = 44/654 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + + +++G YV R CPFHDEK+PSFH + G Sbjct: 11 RIPDRDIAAIRERVNVEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 66 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C GD +FL + SF+E+V+ LA G + +++ ++ L+ Sbjct: 67 FHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRVGYTITYTGASTTNVQRDRGSRSRLL 126 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ +L++A YL +R D+ A F G+AP +L +HL++KGF Sbjct: 127 AANAAAQEFYAEALQSAEAAPARQYLLDRNFDAAAAATFGCGFAPSGWETLTKHLQRKGF 186 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +++ AGL + DRF RL++PIR+S G+VI FG R + + + KY+N+ Sbjct: 187 EFKELEAAGLSRE--GRRGPMDRFHRRLLWPIRTSAGEVIGFGARRIFDDDPMEAKYVNT 244 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K L+ A + KS R ++VEGY DV+++ AG V+ Sbjct: 245 PETVLYKKSSVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLAGETTAVA 294 Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 S GTA + L LL + R L F D A + G V Sbjct: 295 SCGTAFGDSHLSLLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 354 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL--EIHLK 409 + G DP G A L+ +P+ + + + D +A++ Sbjct: 355 -AADGMDPCDLRLKSGDGALRDLVARRIPMFEFAVRSLIPSGDALDNDPQAKVDALRQCV 413 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRL 466 + I+D LR Y++ + + R R R Sbjct: 414 PLVARIRDYALRDEYARRLAGWTGWNDEGQVLNRVREEAAKRGMPDRGRRRGASAAQTPP 473 Query: 467 MQSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + +P + L + + +PA+ + LA + + + + Sbjct: 474 ASPATSAVPPVARPDPADPTLWPQREALKSALQYPALAGPVFDSLAAESFTHPGYTAVRA 533 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + + ++ L ++ + + Y Sbjct: 534 AIEAAGGTAAGVTGAQWIEMVRDQASTPEAGSLVNELGVEAIN------ADDERLPRYIG 587 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + RQ +++ ++ +++ + ++ L L + + Q Sbjct: 588 GVLARLQEVWIGRQIADVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 641 >gi|295839079|ref|ZP_06826012.1| DNA primase [Streptomyces sp. SPB74] gi|197697700|gb|EDY44633.1| DNA primase [Streptomyces sp. SPB74] Length = 637 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 143/661 (21%), Positives = 263/661 (39%), Gaps = 54/661 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI +++ +Y+ G+ CPFHDEK+PSF + +KG Sbjct: 4 RIKDEDVKAVRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + SF E+V+RLA AG+ L + ++ + LI Sbjct: 60 FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPAQQRGERIRLID 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A ++ L + +L ERG D A F +GY+P L +LR +GF+ Sbjct: 120 AHRAAAKYYEEQLAGPEAEIGRKFLAERGFDQAAAAHFGVGYSPAGWDHLTRYLRGQGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++I +GL DRFR RL++PI+ G ++ FG R L + ++ KYLN+PE Sbjct: 180 DRELITSGL-SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + ++ R ++VEGY DV++ +GV V++ Sbjct: 239 TPVYRKSQVLYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATC 288 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 289 GTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP G+ A +L +PL + + TP RA + Sbjct: 346 PDNMDPCDLRLAKGEQAVAELAEPRVPLFEFALRHIVSRYDLETPAGRAAALDEAAPVVA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 +K+ LR+ + + L Q + + + + R + + P+ Sbjct: 406 SVKNVALRHAVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPAAATA 465 Query: 468 QSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + G LR E LL + P ++ + + + Sbjct: 466 GAPQRPGAQGPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQA 525 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + ++ L + D + + TE + +R+ Sbjct: 526 IADAGGAEEGVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDE 574 Query: 582 LALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + + R + R+ E++ +V+ +G+ + A + S L + ++ Q A Sbjct: 575 IYASDQLVRVRVRAVQRRVTELQGTFTRVSTQGDQARAAEVQSELWVLEQYGRALQQQGA 634 Query: 637 M 637 Sbjct: 635 A 635 >gi|218899459|ref|YP_002447870.1| DNA primase [Bacillus cereus G9842] gi|228902816|ref|ZP_04066961.1| DNA primase [Bacillus thuringiensis IBL 4222] gi|228910127|ref|ZP_04073947.1| DNA primase [Bacillus thuringiensis IBL 200] gi|228941458|ref|ZP_04104009.1| DNA primase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228967358|ref|ZP_04128393.1| DNA primase [Bacillus thuringiensis serovar sotto str. T04001] gi|228974389|ref|ZP_04134958.1| DNA primase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980982|ref|ZP_04141285.1| DNA primase [Bacillus thuringiensis Bt407] gi|229048012|ref|ZP_04193588.1| DNA primase [Bacillus cereus AH676] gi|229071796|ref|ZP_04205011.1| DNA primase [Bacillus cereus F65185] gi|229081553|ref|ZP_04214051.1| DNA primase [Bacillus cereus Rock4-2] gi|229111766|ref|ZP_04241314.1| DNA primase [Bacillus cereus Rock1-15] gi|229146878|ref|ZP_04275243.1| DNA primase [Bacillus cereus BDRD-ST24] gi|229192503|ref|ZP_04319466.1| DNA primase [Bacillus cereus ATCC 10876] gi|296504787|ref|YP_003666487.1| DNA primase [Bacillus thuringiensis BMB171] gi|218545781|gb|ACK98175.1| DNA primase [Bacillus cereus G9842] gi|228591080|gb|EEK48936.1| DNA primase [Bacillus cereus ATCC 10876] gi|228636706|gb|EEK93171.1| DNA primase [Bacillus cereus BDRD-ST24] gi|228671760|gb|EEL27056.1| DNA primase [Bacillus cereus Rock1-15] gi|228701758|gb|EEL54246.1| DNA primase [Bacillus cereus Rock4-2] gi|228711391|gb|EEL63351.1| DNA primase [Bacillus cereus F65185] gi|228723469|gb|EEL74838.1| DNA primase [Bacillus cereus AH676] gi|228778773|gb|EEM27037.1| DNA primase [Bacillus thuringiensis Bt407] gi|228785439|gb|EEM33449.1| DNA primase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792393|gb|EEM39960.1| DNA primase [Bacillus thuringiensis serovar sotto str. T04001] gi|228818239|gb|EEM64313.1| DNA primase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228849644|gb|EEM94478.1| DNA primase [Bacillus thuringiensis IBL 200] gi|228856825|gb|EEN01340.1| DNA primase [Bacillus thuringiensis IBL 4222] gi|296325839|gb|ADH08767.1| DNA primase [Bacillus thuringiensis BMB171] gi|326942075|gb|AEA17971.1| DNA primase [Bacillus thuringiensis serovar chinensis CT-43] Length = 598 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|238756615|ref|ZP_04617910.1| DNA primase [Yersinia ruckeri ATCC 29473] gi|238705163|gb|EEP97585.1| DNA primase [Yersinia ruckeri ATCC 29473] Length = 582 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 169/598 (28%), Positives = 282/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGSTQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ + F+ SL + K+ YL+ RG+ I F +G+AP + + + S Sbjct: 119 LMDQLSAFYQQSLNSPTAKQARGYLEHRGLSEDIIRHFAIGFAPAGWDNALKRFGRDAES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQVIHPNPTR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRATDQVICCYDGDRAGRDAAWRALETALPYLTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + ++ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDKLMPKLAENTNSYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVNTCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATWNHMIAEEMIEP--TFVDTLTSLYDSILEQRQETLIARDR 559 >gi|269794717|ref|YP_003314172.1| DNA primase [Sanguibacter keddieii DSM 10542] gi|269096902|gb|ACZ21338.1| DNA primase [Sanguibacter keddieii DSM 10542] Length = 656 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 148/675 (21%), Positives = 252/675 (37%), Gaps = 66/675 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ + + I ++G+ V G CPFHDE++PSFH G + Sbjct: 5 IKREDVDAVRDKARIEEIVGEQVTLRPAG----VGSMKGLCPFHDERSPSFHVRPQVGRW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C+ GD +SF+ + G F E+V+ LA G+ L + ++ + + L+ Sbjct: 61 HCFGCNEGGDVISFVQKIDGLGFSEAVEYLAGRVGIQLRYEEGSGPRRTEEPGKRQRLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A FF L +L ER D + F +GYAP + +HLR KGF+ Sbjct: 121 ANRIAGAFFAEQLLTPEAATARAFLAERSFDRNDALHFGIGYAPKGWDAALKHLRGKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 E ++ +GL+ G+ YDRFR RLI+PIR G+ I FG R L + + KYLN+PE Sbjct: 181 EAELTASGLVSQGNR--GIYDRFRGRLIWPIRDVTGETIGFGARKLYEEDQGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K + I++VEGY DV++ +GV V++ Sbjct: 239 TALYKKSQVLYGIDLAKRDIAK----------NKQIVVVEGYTDVMAAHLSGVTTAVATC 288 Query: 299 GTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 GTA +R + I+ FDGD G +AA +A Sbjct: 289 GTAFGPDHVRFARRLVGDTSAGGGVQLAGGGSSGGEIIFTFDGDAAGQKAAMRAFGEDQK 348 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 + + G DP + G A + L+ PL + + K +T + Sbjct: 349 FYA---QTFVAVEPSGMDPCDLRQARGPQAVQALVEGRQPLFEFVIKTTLATYDLDTAEG 405 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 R + I+D LR Y++ + L + + GR + + Sbjct: 406 RVAALRAAAPVVAGIRDTALRPEYARMLAGWLGMDGESVLRAVQTAGRGQGNGQQRGGDR 465 Query: 461 GPSQRLMQ----------------SSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQ 503 G R + S + E L ++ HP + Sbjct: 466 GRPSRQAPEQSGDGGARLPGADSGDGFQRPSQSDPIARLERQTLEVILQHPHHIPAAAVD 525 Query: 504 ELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +L + + + + + E + E +L ++ Sbjct: 526 DLPGDAFTVPAWRAVHEAIRAAGGLATAAQRQDSEWVGLITEECSPPVLALVNELAV--- 582 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + E + Q + + ++R+ ++ ++ EAE + L Sbjct: 583 --APLPEDRPGAIDDYVQGVVRAFVELG-ITRKIGNARSRLQRLDPVAEAEAYNQAFTDL 639 Query: 622 HEVHIQIHQIESQEA 636 + Q ++ Q A Sbjct: 640 LTLEQQRRELREQSA 654 >gi|332163000|ref|YP_004299577.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667230|gb|ADZ43874.1| DNA primase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862245|emb|CBX72406.1| DNA primase [Yersinia enterocolitica W22703] Length = 582 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 282/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRIFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQNANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENVNTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559 >gi|239931425|ref|ZP_04688378.1| DNA primase [Streptomyces ghanaensis ATCC 14672] gi|291439798|ref|ZP_06579188.1| DNA primase [Streptomyces ghanaensis ATCC 14672] gi|291342693|gb|EFE69649.1| DNA primase [Streptomyces ghanaensis ATCC 14672] Length = 639 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 150/656 (22%), Positives = 270/656 (41%), Gaps = 42/656 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD L+F+ + SF E+V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPAHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A +++ L + + +L ERG D A F +GY+P L +LR KGF Sbjct: 120 AHKIAAEWYAEQLETSPEAETGRVFLAERGFDQAAARHFGVGYSPQGWDHLTRYLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 S+++++ +GL + DRFR RL++PIR G+V+ FG R L KYLN+P Sbjct: 180 SDKELVLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLHDADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + KS R ++VEGY DV++ AGV +++ Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIAKSSRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVGRYDLDTPAGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK+ ++ + + L L +++ + W + + Q+ Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGKGPAPDRQQRGGPQQY 464 Query: 473 KGK----------LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 L E LL + P ++ + + + + Sbjct: 465 APAPAAPRGPALTLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQAI 524 Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 E P+E R+ + + ++ + V + + + + +V + Y A Sbjct: 525 LDAGGAEYGVQDPQEYLIRVRDAAPDDTVRAM---VTELAVEAIMLHRGVKEVDETYAGA 581 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R R + R+ ++ ++ ++ G+ + A + + L + + A Sbjct: 582 QLVTVRRRAVERRIRDVTSRLTRLATHGDPAELASVQNELWVLQQYDQALREHGAA 637 >gi|238789196|ref|ZP_04632984.1| DNA primase [Yersinia frederiksenii ATCC 33641] gi|238722728|gb|EEQ14380.1| DNA primase [Yersinia frederiksenii ATCC 33641] Length = 582 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFERRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENINSYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559 >gi|149910042|ref|ZP_01898690.1| DNA primase [Moritella sp. PE36] gi|149806910|gb|EDM66871.1| DNA primase [Moritella sp. PE36] Length = 578 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 167/628 (26%), Positives = 286/628 (45%), Gaps = 59/628 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI L+ I +++ + V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPRDFIDGLIGRADIVDIVEKRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120 Y+CF C G+ + FL F+E+++ LA+ G+ +P + + + D L Sbjct: 59 YHCFGCGAHGNAIGFLMEYDNLEFVEAIEDLASFYGMEVPREEGGTQGPTAPERKDYYEL 118 Query: 121 IEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E T F+ + LK +KR+ YL +RG+ + I+ + +GYA ++ + + + Sbjct: 119 LESVTRFYQYQLKEHPNKRVVNDYLKQRGLSAEVIKKYAIGYAAPGWDNVLKRFGRDKHT 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E++++ G+LI+ + + YDRFR R++FPIR RG+VI +GGR L E KYLNSPET Sbjct: 179 EDQLLTTGVLIENEGQSRRYDRFRERVMFPIRDKRGRVIGYGGRVL-GDEKPKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKGK LY + I++VEGYMDV++L Q G+ V+SLG Sbjct: 238 PIFHKGKELYGLYEVRQA----------YKEIPQIVVVEGYMDVVALAQFGIDYAVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ + Q++ L++ + +++ C+DGD G AA++A++ L L G +NFV L GEDP Sbjct: 288 TSTSGDQMQTLFRNTSQVICCYDGDKAGRDAAWRALENALPQLRDGKELNFVFLPDGEDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK A E+L E+ L D L+ R ++N T R++L +K I + D Sbjct: 348 DSLVRHQGKDALEQLFKEAQTLPDFLFSRLSQNIDTLTDAGRSKLASQVKPLIEKMPDGF 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L K + P+++ +Q + + Sbjct: 408 YRGIVLKKLARFLGWDEAKLNKLFTSIA-----------TAKPTKKAIQITPI------- 449 Query: 480 PSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ +P I + +L ++ + L + ++ Sbjct: 450 -----RRAIGLLLQNPHIGFNLPIFDDLPQLKLPG---INILLKLLAQTNSSDQISTAQL 501 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + L +L + D + +++ ++ E Sbjct: 502 LEYWRDTPEQKALIKLAVW-----------DHGADDAIEAEFFDTLFVLSTQVIEQRFGE 550 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625 + Q+ + SIL E+ Sbjct: 551 L--QLKSAQGGLTKPELLEYKSILDELK 576 >gi|123443867|ref|YP_001007838.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090828|emb|CAL13710.1| DNA primase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 582 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 174/596 (29%), Positives = 281/596 (47%), Gaps = 42/596 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQNANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMDEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L + L+ L + Q ++ + Sbjct: 452 -----RILIGLLVQNPQLA-TLIPSLKGVEQAKLAGLPLFIELVETCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + F + L+ L + + E VD ++ ++ L++R + Sbjct: 506 LYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559 >gi|254435374|ref|ZP_05048881.1| DNA primase [Nitrosococcus oceani AFC27] gi|207088485|gb|EDZ65757.1| DNA primase [Nitrosococcus oceani AFC27] Length = 584 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 178/608 (29%), Positives = 277/608 (45%), Gaps = 45/608 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++FI +L+ I LI V + +Y ACCPFH+EKTPSF + K F Sbjct: 16 RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNYVACCPFHNEKTPSFTVSPQKQF 70 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C V G + FL A SFIE+V+ LA AG+ +P K + L ++ Sbjct: 71 YYCFGCSVHGTAIGFLMAFDRLSFIEAVEELAQRAGMMVP-QSSKQQDYYNRHQGLYEVL 129 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ L+ +A ++ YL ERG+ I F LG+AP +L + R S Sbjct: 130 ACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNALLHYTRPSLKSY 189 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + YDRFR+RLIFPI RG+VI FGGR L S KYLNSPET Sbjct: 190 LQAAGLTISK---GEDRYYDRFRDRLIFPIHDYRGRVIGFGGRLL-GDGSPKYLNSPETA 245 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + L + R +++VEGYMDVL+L + ++ V++LGT Sbjct: 246 LFHKGRELYGLYQVRKSLHRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 295 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L L++++P ++ CFDGD G +AA++A++ L L G +V F+ L +GEDPD Sbjct: 296 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGEDPD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G+TAFE + E++PL D L + + ++ D A L + + I Sbjct: 356 TMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPPGVY 415 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + Q I S + R +Q S Sbjct: 416 QDMLLARLAELAQIEQTTLIRHLSPGKKPTAVPLRRLEQGAASPT--------------- 460 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P ++Q + L+ + +L L + + +R Sbjct: 461 ----RRAVAILLQRPKMIQWVDKNLSLRGLEG-AGAELLQKLVDLLQNNPHLNTAALLER 515 Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596 + G L+QL + +A + ++ QG +Q + L+ ++ Sbjct: 516 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIITLSNQPSLTGAEQR 575 Query: 597 EIEKQIAQ 604 E+ +A+ Sbjct: 576 ELLALLAE 583 >gi|119356438|ref|YP_911082.1| DNA primase [Chlorobium phaeobacteroides DSM 266] gi|119353787|gb|ABL64658.1| DNA primase [Chlorobium phaeobacteroides DSM 266] Length = 636 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 175/651 (26%), Positives = 274/651 (42%), Gaps = 43/651 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++ I D+ I +LI YV N Y A PF EKTPSF + K + Sbjct: 7 IPQNIIDDIRRSTDIVDLIADYVKLHPSGRN-----YKALSPFTQEKTPSFVVSPDKQIF 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ +F+ + SF E+V+ LA G+ + + + + + + Sbjct: 62 KCFSTGKGGNVYTFVMEMEKISFPEAVELLAKRTGIDISRFTKQQKIQNEENESQTGTLR 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FH++L++ + + YL E RG+ I+ F +GYAPD +L +Q Sbjct: 122 WAARTFHNTLESPKGVQGLSYLTEARGLSRAIIQQFGIGYAPDQWDNLINEAKQASIPLA 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 + E GL + YD FRNR+IFPI S GQV FGGRTL KYLNSPE Sbjct: 182 NLTELGLTTHHKERGSWYDTFRNRVIFPIFSIGGQVAGFGGRTLDSDPRTPKYLNSPENP 241 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY A + +++S +LVEGYMDVL+L QAG+ V+S GT Sbjct: 242 LFEKSKLLYGLHAAKDEIRRS----------ESALLVEGYMDVLALHQAGITTAVASCGT 291 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT YQ ++L + + R++ +D D G ++ ID + G + L G+DPD Sbjct: 292 SLTRYQAKILQRYTNRVLFVYDADPAGKKSMMAGID---TLVTEGITPFVLELPSGDDPD 348 Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SF++ GK F + ++ +D + T++ +F D +A+ + + I I D+ Sbjct: 349 SFVQRAGKEEFLRYSEKNKQSFIDFQIRFFTQSGNFAQTDVKAKAIRAITHTIALIPDRI 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y Q + ++L F + R +K + KK Sbjct: 409 RQELYLQELSEKLGISFSSLKELLVIE-------STMRREKNIPGENSMRARPTPVPEKK 461 Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530 S+ E L L+ A+L+ + N Q +++ L + Sbjct: 462 MSVLERTFLKALLESSFYGNAVLEFAASHENMLTLPNPLAQNIFTHLIRRYHSLSGSPND 521 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588 + E L L + W T+ N + RQ L +K Sbjct: 522 HLDIISEISMFSEPEARNLASGLLLDQPVSKKWHEQTDLNAENARQCLASFLDAFKSLVL 581 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638 L RQKE + +QI + +A L+ + +I + + AMI Sbjct: 582 EPLIRQKEILTEQIR---NENDAALETELLREKITLDRKIRKTSDDLRAMI 629 >gi|228923045|ref|ZP_04086338.1| DNA primase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836678|gb|EEM82026.1| DNA primase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 598 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 158/630 (25%), Positives = 272/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATIKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVAKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E Q R +K E Sbjct: 519 LSWLSDEKLKNIITDI------STDEFINPEYTEE-----VLQGHLETLRRHQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|261492896|ref|ZP_05989442.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496754|ref|ZP_05993129.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307593|gb|EEY08921.1| DNA primase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311437|gb|EEY12594.1| DNA primase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 582 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 173/604 (28%), Positives = 284/604 (47%), Gaps = 49/604 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I +I V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGR-----DYQACCPFHHEKSPSFSVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C V G+ ++FL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENVIQRDGKPQANFKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E F+ +L + YL +RG+ IE F++G+AP++ + Sbjct: 116 KRNLYELMEAVAKFYQQNL--SHQIEPQSYLQQRGLSPEIIERFEIGFAPNAFDAALRTF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232 Q +K+++ G+L D+ YD+FRNR++FPIR RG+VIAFGGR L E K Sbjct: 174 GQSQEDIQKLLDTGVLTKNDSG-RIYDKFRNRVMFPIRDKRGRVIAFGGRVLPNDEQGAK 232 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+NSPET+++HKG LY + AL + ++ +VEGYMDV++L Q GV Sbjct: 233 YMNSPETVIYHKGSELYGLYQALK----------VNETPDYLFVVEGYMDVVALAQFGVD 282 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V+SLGTA T Q++ +++ + +IV C+DGD G AA++A++ L +L G ++ F+ Sbjct: 283 NAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIF 342 Query: 353 LSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L GEDPD+F+R GK FE+ + + PL D L+ + ++ + +++L Sbjct: 343 LPDGEDPDTFVRSQGKEGFEQYVAQNAKPLNDFLFDSLLADVDLSSKEGKSKLAALAVPL 402 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IN I + LR Y + +L L I + +K + + Sbjct: 403 INRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVKMKRTPM------ 456 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 L+ LI +P +++ A + L + + + + Sbjct: 457 -------------RLLIALLIQNPYLVKFVPDVSALASLKDPGF-TLLTDIVATCQQNAG 502 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + E ++++ L D E +D L ++ L+ Sbjct: 503 ISMGGLLEHYREDPQYKIVEALANW--DHLELPENIERTFIDTLDFLYAKLVELRKEELI 560 Query: 592 SRQK 595 ++ + Sbjct: 561 AKDR 564 >gi|296116668|ref|ZP_06835278.1| DNA primase [Gluconacetobacter hansenii ATCC 23769] gi|295976880|gb|EFG83648.1| DNA primase [Gluconacetobacter hansenii ATCC 23769] Length = 624 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 172/631 (27%), Positives = 269/631 (42%), Gaps = 25/631 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ +L PI+++IG+ R N + ACCPFH EKTPSF+ D Sbjct: 1 MAFDPAFLDELRARTPITSVIGRRTKLVRSGRN-----WKACCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD +SF+ G SF E+V+ LA AG+ +P +D + ++ L + Sbjct: 55 -FHCFGCGVHGDVISFVMQSEGRSFPEAVEELATAAGLEMPRMDRTQREAQREARTLGDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + L + YL RG+ I F LG++ D R L L + + Sbjct: 114 LEAVQQAWRLRLHRNEGREGLAYLRGRGLTDETIAAFGLGWSGDGRGGLVAELAAQDITA 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +AGL+ ++ + F NR+ FPI RG++++FGGR L KYLN PET Sbjct: 174 PLLAQAGLMRVDEHGQPKGELFFNRVTFPIHDRRGRLVSFGGRIL-GDGQPKYLNGPETA 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + L+ ++ R + +++VEGYMDV++L QAG V+ LGT Sbjct: 233 IFSKRRVLFGLDR-ARAAVRAPRGGGHAAPAPELLVVEGYMDVIALHQAGFTGAVAPLGT 291 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+ LW++S VLCFDGD G RAA KA + L L + F L GEDPD Sbjct: 292 ALTPEQMEALWQVSSAPVLCFDGDAAGQRAAVKAAETALPLLNVERTLRFCTLPEGEDPD 351 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G A L+ + PL ++L+ +E P++RA L L I D+ L Sbjct: 352 SLLRQRGTAAMAALVEGARPLSEVLFGLLSEGTRDPGPEQRAALRQRLVEAAGLIPDKSL 411 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + DR F++ + S + Sbjct: 412 ASEYRSTLLDRFFATFRR-----RPAMSGRGGRGQGAAPAARSLAGVLPVAPDLDAQSVA 466 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ-KYFLPEEIHQ 539 R L L+ HP +L+E + EL L + + + + + Sbjct: 467 MERMRILTAILLRHPEVLEEVQDAYCRLDMP-PELSALRAVMLDMLADGDGNADASALLE 525 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQK 595 L R L + +V + + + D+RQ + AL + R Sbjct: 526 ALGARIGEANLSDMRERVLSSHPLPLSAQERDDLMVMDIRQEWWHFYALL----NVERFA 581 Query: 596 EEIEKQIAQVTAKGEAEKTAILIS-ILHEVH 625 +I +++ E+ + L + Sbjct: 582 ADIRLDTERMSTGPIDERQWESLRVRLLTLE 612 >gi|302551233|ref|ZP_07303575.1| DNA primase [Streptomyces viridochromogenes DSM 40736] gi|302468851|gb|EFL31944.1| DNA primase [Streptomyces viridochromogenes DSM 40736] Length = 638 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 147/655 (22%), Positives = 267/655 (40%), Gaps = 41/655 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD L+F+ + SF E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A +++ L + +L ERG D A F +GY+P L +LR KGF Sbjct: 120 AHKIAAEWYAEQLAMSPEADTGRVFLAERGFDQAAAVHFGVGYSPQGWDHLTRYLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 ++++++ +GL + DRFR RL++PIR G V+ FG R L + KYLN+P Sbjct: 180 TDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 DTAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDEAVADLVEPRTPLFEFALRQIVGRYDLDTPAGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---------S 463 IK+ ++ + + L L +++ + W + + + Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGKGPAPDRHQHAAQQYA 464 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q L E LL + P ++ + + + + Sbjct: 465 QPSAAPRGPALNLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPPYAAVRQAIL 524 Query: 524 SDFVEQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + P+ ++ E + ++ + V + + + V + Y A Sbjct: 525 DAGGSEPGVEDPQGYLVKVREAAPDDAVRAM---VTELAVEAILLHKGTKGVDEVYAGAQ 581 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R R + R+ +I+ Q+ ++ G+ + A + + L + + Q A Sbjct: 582 LVTVRRRAVERRIRDIQSQLTRLGTHGDPAQLAAVQNELWVLQQYDQTLRVQGAA 636 >gi|213417804|ref|ZP_03350914.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 573 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 171/626 (27%), Positives = 291/626 (46%), Gaps = 58/626 (9%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K FY+CF Sbjct: 1 FINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQFYHCFG 55 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVA 124 C G+ + FL F+E+V+ LAA+ + +P + + + +L +L+ Sbjct: 56 CGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQLMNGL 115 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 DF+ SL + K YL +RG+ + I+ F +G+AP + + ++ ++ Sbjct: 116 NDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDNKALLL 175 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET +FHK Sbjct: 176 DAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPETDIFHK 233 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 G+ LY + A Y + R +++VEGYMDV++L Q + V+SLGT+ T Sbjct: 234 GRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLGTSTTA 283 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDPD+ +R Sbjct: 284 DHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVR 343 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + ++ PL L+ ++PD +L IN + R Sbjct: 344 KEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQL 403 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q + +L + P+ +L ++++ Sbjct: 404 RQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM------------- 443 Query: 485 AALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L+ L+ +P + L + L L+ L + Q ++ + Sbjct: 444 RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQLLELYR 500 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L++L +W + I + + +L + LL ++EE+ I Sbjct: 501 GTNDAATLEKL-------SMWDDIADKAI--AEKTFTDSLN-HMFDSLLQLRQEEL---I 547 Query: 603 AQVTAKG-EAEKTAILISILHEVHIQ 627 A+ G +E+ L ++ E+ + Sbjct: 548 ARDRTHGLSSEERRELWTLNQELARK 573 >gi|302534291|ref|ZP_07286633.1| DNA primase [Streptomyces sp. C] gi|302443186|gb|EFL15002.1| DNA primase [Streptomyces sp. C] Length = 633 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 153/654 (23%), Positives = 274/654 (41%), Gaps = 46/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKGF Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C GD L F+ + SF E+V+RLA AG+ L + + L+ Sbjct: 60 YHCFGCQAGGDTLDFIMKIDHLSFSEAVERLAGQAGITLRYEEGGYTAGTSGRGERIRLV 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A F+ L A + +L ERG D A + F +GY+P L LR KGF Sbjct: 120 EAHKAAALFYAEQLGGAEAEIARRFLAERGFDQAAAQHFGVGYSPAGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++++I +GL D + DRFR RL++PIR G+V+ FG R L + ++ KYLN+P Sbjct: 180 TDKELILSGLAQDSRSG-KPIDRFRGRLMWPIRDISGEVVGFGARKLREDDNGPKYLNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 239 ETAIYKKSQVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHLAGVTTAIAT 288 Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L + ++ FDGD G +AA +A + + + Sbjct: 289 CGTAFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSITI 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + + + P RA + Sbjct: 346 APGGMDPCDLRLAQGDAAVAGLVDARTPLFEFALRHIVSRHNLENPAGRAAALAEAAPVV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL- 471 IKD +++ + + L L ++++ + W + ++ Q+ R + + Sbjct: 406 ASIKDLSIQHESAVQLAGMLGILDEQFVVKRVAQLARWARERGNQPQQQGRGRPQEPAPA 465 Query: 472 ---------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 L E LL + PA++ + + + + Sbjct: 466 PPPASVGGGPALNLRSPAHRTERELLKLALQRPALVSPAFDAYGIDEFTAPPYAAVRQAI 525 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + E+ R+ E + ++ + ++ + + T + + Y Sbjct: 526 QDAGGAAQA--TEDYVARVREAAPNDTVRAMVTELAVEAIHAKTVD-------EVYAGVQ 576 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + R R + R+ EI+ + +++ + E+ A + L + ++ ++ A Sbjct: 577 LVQVRLRAVDRRVLEIQGALTRLSPQAPPEQHAAVQQELWVLQQYGQRLRNRGA 630 >gi|227113749|ref|ZP_03827405.1| DNA primase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 584 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 49/608 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL +RG+ + I F +G+AP ++ + + Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + ++LPL L++ + ++PD R +L I + + Sbjct: 347 DTLVRQEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + ++ + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L I D L+ L + Sbjct: 452 -----RILIGLLVQNPRLATEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591 ++ + + + L+ + + E + + + Y Q L R L Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565 Query: 592 S-RQKEEI 598 + ++K+E+ Sbjct: 566 NAKEKKEL 573 >gi|116669899|ref|YP_830832.1| DNA primase [Arthrobacter sp. FB24] gi|116610008|gb|ABK02732.1| DNA primase [Arthrobacter sp. FB24] Length = 628 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 145/648 (22%), Positives = 255/648 (39%), Gaps = 43/648 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I ++ YV G + CPFHDE++PSF G Y Sbjct: 5 IKREDIDEVRQRTDIKEVVDGYVTLKGAG----LGSFKGLCPFHDERSPSFTVRPQVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ L SF E+V++LAA G L D + + L+ Sbjct: 61 HCFGCGEDGDVISFVQKLDHSSFHEAVEKLAARIGFELRYEDGGTGPSREDVGKRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +FF L +L RG D A E F +GYAP +L +HLR +G++ Sbjct: 121 AHKVADEFFRAQLLTPGASEGRNFLHGRGFDRTAAEQFGVGYAPQGWDALLKHLRGRGYT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++ G+ +G+ YDRFR RLI+PIR G I FG R L + + KYLN+PE Sbjct: 181 DAELKLTGMFSEGNR--GIYDRFRGRLIWPIRDIAGDTIGFGARKLYEDDQGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV++ +G+ V++ Sbjct: 239 TTLYKKSQVLYGIDLAKRNIAK----------ERQLVVVEGYTDVMACHLSGITTAVATC 288 Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ + ++ FDGD G +AA +A + + + + Sbjct: 289 GTAFGADHIKIARRLLSDDGTGGEVIFTFDGDAAGQKAALRAFEEDQRFVA---QTYVAV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP + G +A LI PL + + + + +T + R + Sbjct: 346 EPTGADPCDLRQARGDSAVRDLISSRRPLFEFAIRASLKRHNLDTVEGRIAALRESAPVV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------SQRL 466 I+D +R Y++ + L ++ + + + Sbjct: 406 AQIRDAGIRPGYARELAGWLGMPVEEVSRAVAVAAKRAAQGDTPAGSGAAPGIAELPASG 465 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSD 525 + S + + E L + PA + + + + Q + + Sbjct: 466 VVPSFNRPDPRDPVASMERQALEVALQEPAMLAGGTWDRFSAAGFRTPAYQAVHDAM--- 522 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + R E+ E+ + L V + + +R Y + + Sbjct: 523 RASGPGLTGDPV--RWVEQVMNEVPEPLRPLVSELAVVPLPASNAEGVLR--YCRDILAR 578 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++R K + Q+ ++ A E+ L L + ++ + S Sbjct: 579 LFELQITRVKADKMGQLQRLDASSHPEEFQRLNRELMLLEMERRSLRS 626 >gi|77163591|ref|YP_342116.1| DNA primase [Nitrosococcus oceani ATCC 19707] gi|76881905|gb|ABA56586.1| DNA primase [Nitrosococcus oceani ATCC 19707] Length = 574 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 178/608 (29%), Positives = 277/608 (45%), Gaps = 45/608 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++FI +L+ I LI V + +Y ACCPFH+EKTPSF + K F Sbjct: 6 RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNYVACCPFHNEKTPSFTVSPQKQF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C V G + FL A SFIE+V+ LA AG+ +P K + L ++ Sbjct: 61 YYCFGCSVHGTAIGFLMAFDRLSFIEAVEELAQRAGMMVP-QSSKQQDYYNRHQGLYEVL 119 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ L+ +A ++ YL ERG+ I F LG+AP +L + R S Sbjct: 120 ACAAEFYQQQLEASAYQGQVKAYLRERGLSGPIIAEFGLGFAPPRWNALLHYTRPSLKSY 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + YDRFR+RLIFPI RG+VI FGGR L S KYLNSPET Sbjct: 180 LQAAGLTISK---GEDRYYDRFRDRLIFPIHDYRGRVIGFGGRLL-GDGSPKYLNSPETA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + L + R +++VEGYMDVL+L + ++ V++LGT Sbjct: 236 LFHKGRELYGLYQVRKSLHRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L L++++P ++ CFDGD G +AA++A++ L L G +V F+ L +GEDPD Sbjct: 286 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLSQGRQVQFMFLPQGEDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G+TAFE + E++PL D L + + ++ D A L + + I Sbjct: 346 TMVRAEGQTAFEARLAEAVPLSDFLLNNLRQKVNLSSVDGCARLVELARPLLARIPPGVY 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + Q I S + R +Q S Sbjct: 406 QDMLLARLAELAQIEQTTLIRHLSPGKKPTAVPLRRLEQGAASPT--------------- 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P ++Q + L+ + +L L + + +R Sbjct: 451 ----RRAVAILLQRPKMIQWVDKNLSLRGLEG-AGAELLQKLVDLLQNNPHLNTAALLER 505 Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596 + G L+QL + +A + ++ QG +Q + L+ ++ Sbjct: 506 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIITLSNQPSLTGAEQR 565 Query: 597 EIEKQIAQ 604 E+ +A+ Sbjct: 566 ELLALLAE 573 >gi|229019518|ref|ZP_04176335.1| DNA primase [Bacillus cereus AH1273] gi|228741774|gb|EEL91957.1| DNA primase [Bacillus cereus AH1273] Length = 598 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 163/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQENISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 FSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A Y++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPYIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTPLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + S N + Q L KR +K E Sbjct: 519 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLKR-HQEKLEKME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|42783420|ref|NP_980667.1| DNA primase [Bacillus cereus ATCC 10987] gi|42739349|gb|AAS43275.1| DNA primase [Bacillus cereus ATCC 10987] Length = 571 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 157/596 (26%), Positives = 270/596 (45%), Gaps = 32/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINHLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQ----AKPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ P + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSPEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L + ++ + D + TE + + ++ KR++ SR Sbjct: 519 LSWLSDEKLKNIITDI---STDEFINPEYTEEVLQGHLETLRRHQEKLKRWKSSSR 571 >gi|300112779|ref|YP_003759354.1| DNA primase [Nitrosococcus watsonii C-113] gi|299538716|gb|ADJ27033.1| DNA primase [Nitrosococcus watsonii C-113] Length = 575 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 176/608 (28%), Positives = 279/608 (45%), Gaps = 44/608 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++FI +L+ I LI V + ++ ACCPFH+EKTPSF + K F Sbjct: 6 RIPQEFIDELVARTDIVELIDSRVPLRKA-----SHNHVACCPFHNEKTPSFTVSPQKQF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C V G + FL A SFIE+V+ LA AG+ +P K + L ++ Sbjct: 61 YYCFGCGVHGTAIGFLMAFDRLSFIEAVEELAQRAGMIVP-QSSKQQDYYNRHQGLYEVL 119 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ L+ NA ++ YL ERG+ I F LG+AP +L + + S Sbjct: 120 ACAAEFYQQQLEANAYQGQVKAYLRERGLSGSVIAEFGLGFAPPRWNALLHYTQPSLKSH 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + YDRFR+RLIFPI RG+VI FGGR L G KYLNSPET Sbjct: 180 LQAAGLAISK---GENRYYDRFRDRLIFPIHDYRGRVIGFGGRLLGNGSP-KYLNSPETP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + L++ R +++VEGYMDVL+L + ++ V++LGT Sbjct: 236 LFHKGRELYGLYQVRKSLRRCDR----------LLVVEGYMDVLALAEHKIRYAVATLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L L++++P ++ CFDGD G +AA++A++ L L G +V F+ L +GEDPD Sbjct: 286 ATTSDHLTRLFRITPAVIFCFDGDRAGYQAAWRALETALPLLGQGRQVQFMFLPQGEDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G+ AFE I +++PL D L + ++ D RA L + + I Sbjct: 346 TVVRAEGQMAFEARITKAMPLSDFLLNNLRQKVDLSSVDGRARLVELAQPLLARIPPGVY 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + Q I + R ++G + Sbjct: 406 QDMLLAHLAELAQLEQATLIRHLRPGKKPMAVPPLQRLERGAASPT-------------- 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P ++Q + L+ + +L L + Y + +R Sbjct: 452 ----RRAVAILLQRPKMIQWVDKNLSLRELEG-AGVELLQKLINLLRNNPYLNTAALLER 506 Query: 541 LCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLS-RQKE 596 + G L+QL + +A + ++ QG +Q + + L+ ++ Sbjct: 507 WRDSEMGRYLEQLAGWELLLTDEDMVLELQAALERLQVQGAEQRIIILSNQSSLTGAEQR 566 Query: 597 EIEKQIAQ 604 E+ +A+ Sbjct: 567 ELLALLAE 574 >gi|253686950|ref|YP_003016140.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753528|gb|ACT11604.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 584 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 170/608 (27%), Positives = 279/608 (45%), Gaps = 49/608 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYESGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL +RG+ + I F +G+AP ++ + + Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQSHAELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK FE+ + ++LPL L++ + ++PD R +L I + + Sbjct: 347 DTLVRKEGKAVFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQPYQPPQLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L I D L+ L + Sbjct: 452 -----RILIGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591 ++ + + + L+ + + E + + + Y Q L R L Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565 Query: 592 S-RQKEEI 598 S ++K+E+ Sbjct: 566 SAKEKKEL 573 >gi|229490245|ref|ZP_04384087.1| DNA primase [Rhodococcus erythropolis SK121] gi|229322777|gb|EEN88556.1| DNA primase [Rhodococcus erythropolis SK121] Length = 639 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 139/651 (21%), Positives = 244/651 (37%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 4 RISDRDIAAIRERTRIEDIVGEYVSLKRAG----GDSIKGLCPFHDEKSPSFHVRPNHGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD SFL + SF+E+V++LA + P +++ + LI Sbjct: 60 YHCFGCGEGGDVYSFLQKMDHISFVEAVEQLADRLSYTISYEGGGPSVQRDRGTRARLIA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L+ + YL ER D A F GYAP+ +L +HL KGF Sbjct: 120 ANAAAQEFYAARLREPDAQAARDYLTERNFDGAAALQFGCGYAPEGWDTLTKHLMSKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL + DRF RL++PIRS G VI FG R L +++ KY+N+P Sbjct: 180 FKELEAAGLSKE--GRRGPIDRFHRRLLWPIRSVAGDVIGFGARKLFDDDTMPGKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ETIL+ K + L+ A + K ++VEGY DV+++ AGV+ V+S Sbjct: 238 ETILYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353 GTA E L +L +L + ++ + Sbjct: 288 CGTAFGEEHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ P+ + + K T + R E + Sbjct: 348 PDGMDPCDLRLKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470 IK+ LR Y+ + + + + + R ++++++ Sbjct: 408 QIKESTLRDSYANLLCGWVGWDDLPSVRRRVRDEARKRASTRGSSPAPKRRQVVEAPAAD 467 Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + + + + A+L + HP I + L + + + + Sbjct: 468 ALALPIGISRPRPNDPALSTQRAVLKAALQHPGIAGSVFDSLPPETFTHPAYVVIRQAMA 527 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 K E + + + + + ++ + D Y + Sbjct: 528 DAGGTSKGLGGAEWIEVVTKGVEDMTVASVVSELAVEPMPC------DEDTVPRYINGVL 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + Q +++ ++ +V+ E+ L L + Q+ Q Sbjct: 582 ARLQEAWVGEQVADLKSKLQRVSPAAAPEEYNSLFGDLVALEQYRRQLREQ 632 >gi|254382901|ref|ZP_04998257.1| DNA primase [Streptomyces sp. Mg1] gi|194341802|gb|EDX22768.1| DNA primase [Streptomyces sp. Mg1] Length = 635 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 151/661 (22%), Positives = 262/661 (39%), Gaps = 58/661 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSDYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C GD L F+ + SF E+V+RLA AG+ L + + L+ Sbjct: 60 YHCFGCQAGGDTLDFIMKIDHLSFSEAVERLAGQAGITLRYEEGGYTAGTSGRGERIRLV 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A F+ L A + +L ERG D A E F +GY+P L LR KGF Sbjct: 120 EAHKAAAQFYVDQLGGAEAEIGRKFLAERGFDQAAAEHFSVGYSPAGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++++I +GL D + DRFR RL++PIR G+V+ FG R L ++ KYLN+P Sbjct: 180 TDKELITSGLAQDSRSG-KPIDRFRGRLMWPIRDISGEVVGFGARKLRDDDNGPKYLNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 239 ETAIYKKSQVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHMAGVTTAIAT 288 Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L + ++ FDGD G +AA +A + + + Sbjct: 289 CGTAFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSITI 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + + + P RA + Sbjct: 346 APGGMDPCDLRLAQGDAAVSGLVEARTPLFEFALRHIVARHNLENPAGRAAALDEAAPVV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 +IK+ +++ + + L ++++ + W + + R Sbjct: 406 ANIKNIAIQHESAVQLAGMLGIRDEQFVVKRVAQLARWARERGGQQPPPSRGRASSGYEG 465 Query: 473 KG------------KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 L E LL + PA++ + + + Sbjct: 466 AAQAPAAPAGGPALNLRSPAHRTERELLKLALQRPALVSPAFDAYGMDEFTAPPYAAVRQ 525 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-----VR 575 + +G + L ++ + + + TE + V Sbjct: 526 AILDAGGA--------------SQGTDDYLARVRAAAPNDTVRALVTELAVEAIHAKTVD 571 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + Y + R R + R+ EI+ ++++ AE+ A + L + ++ ++ Sbjct: 572 EIYAGVQLVQVRLRAVDRRVHEIQGTMSRLGPHAPAEQLAAVQEELWVLQQYGQRLRNRG 631 Query: 636 A 636 A Sbjct: 632 A 632 >gi|254362695|ref|ZP_04978781.1| DNA primase [Mannheimia haemolytica PHL213] gi|153094316|gb|EDN75177.1| DNA primase [Mannheimia haemolytica PHL213] Length = 582 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 173/604 (28%), Positives = 282/604 (46%), Gaps = 49/604 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I +I V + DY ACCPFH EKTPSF + S Sbjct: 1 MKGTIPRSFIDDLIARTDIVEVINSRVKLKKAGR-----DYQACCPFHHEKTPSFSVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C V G+ ++FL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGVHGNVITFLMDYDKLEFPEAIEELAAMHGLEVPRENVIQRDGKPQANFKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E F+ +L + YL +RG+ IE F++G+AP++ + Sbjct: 116 KRNLYELMEAVAKFYQQNL--SHQIEPQSYLQQRGLSEEIIERFEIGFAPNAFDAALRTF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232 Q +K+++ G+L D+ YD+FRNR++ PIR RG+VIAFGGR L E K Sbjct: 174 GQSQEDIQKLLDTGVLTKNDSG-RIYDKFRNRVMLPIRDKRGRVIAFGGRVLPNDEQGAK 232 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+NSPET+++HKG LY + AL + ++ +VEGYMDV++L Q GV Sbjct: 233 YMNSPETVIYHKGSELYGLYQALK----------VNETPDYLFVVEGYMDVVALAQFGVD 282 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V+SLGTA T Q++ +++ + +IV C+DGD G AA++A++ L +L G ++ F+ Sbjct: 283 NAVASLGTATTGEQIQQMFRCTEQIVCCYDGDRAGRDAAWRALENALPYLQDGRQLKFIF 342 Query: 353 LSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L GEDPD+F+R GK FE+ + + PL D L+ + ++ + +++L Sbjct: 343 LPDGEDPDTFVRSQGKEGFEQYVAQNAKPLSDFLFDSLLADVDLSSKEGKSKLAALAVPL 402 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IN I + LR Y + +L L I + +K + + Sbjct: 403 INRIPGEMLRVYLRNILGQKLGILDPTQIEALLPTKKAAEKPLHQAVKMKRTPM------ 456 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 L+ LI +P ++ A + L + + + + Sbjct: 457 -------------RLLIALLIQNPYFVKFVPDVSALASLKDPGF-TLLTDIVATCQQNAG 502 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + E ++++ L D E +D L ++ L+ Sbjct: 503 ISMGGLLEHYREDPQYKIVEALANW--DHLELPENIERTFIDTLDFLYAKLVELRKEELI 560 Query: 592 SRQK 595 ++ + Sbjct: 561 AKDR 564 >gi|226307185|ref|YP_002767145.1| DNA primase [Rhodococcus erythropolis PR4] gi|226186302|dbj|BAH34406.1| DNA primase [Rhodococcus erythropolis PR4] Length = 641 Score = 368 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 139/651 (21%), Positives = 244/651 (37%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 6 RISDRDIAAIRERTRIEDIVGEYVSLKRAG----GDSIKGLCPFHDEKSPSFHVRPNHGL 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD SFL + SF+E+V++LA + P +++ + LI Sbjct: 62 YHCFGCGEGGDVYSFLQKMDHISFVEAVEQLADRLSYTISYEGGGPSVQRDRGTRARLIA 121 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L+ + YL ER D A F GYAP+ +L +HL KGF Sbjct: 122 ANAAAQEFYAARLREPDAQAARDYLTERNFDGAAALQFGCGYAPEGWDTLTKHLMSKGFE 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL + DRF RL++PIRS G VI FG R L +++ KY+N+P Sbjct: 182 FKELEAAGLSKE--GRRGPIDRFHRRLLWPIRSVAGDVIGFGARKLFDDDTMPGKYVNTP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ETIL+ K + L+ A + K ++VEGY DV+++ AGV+ V+S Sbjct: 240 ETILYKKSQVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 289 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353 GTA E L +L +L + ++ + Sbjct: 290 CGTAFGEEHLAMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ P+ + + K T + R E + Sbjct: 350 PDGMDPCDLRLKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--- 470 IK+ LR Y+ + + + + + R ++++++ Sbjct: 410 QIKESTLRDSYANLLCGWVGWDDLPSVRRRVRDEARKRASTRGSSPAPKRRQVVEAPAAD 469 Query: 471 -------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + + + + A+L + HP I + L + + + + Sbjct: 470 ALALPIGISRPRPNDPALSTQRAVLKAALQHPGIAGSVFDSLPPETFTHPAYVVIRQAMA 529 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 K E + + + + + ++ + D Y + Sbjct: 530 DAGGTSKGLGGAEWIEVVTKGVEDMTVASVVSELAVEPMPC------DEDTVPRYINGVL 583 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + Q +++ ++ +V+ E+ L L + Q+ Q Sbjct: 584 ARLQEAWVGEQVADLKSKLQRVSPAAAPEEYNSLFGDLVALEQYRRQLREQ 634 >gi|293189580|ref|ZP_06608299.1| DNA primase [Actinomyces odontolyticus F0309] gi|292821480|gb|EFF80420.1| DNA primase [Actinomyces odontolyticus F0309] Length = 656 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 149/670 (22%), Positives = 255/670 (38%), Gaps = 67/670 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + + I +IG++V G CPFHDE+TPSF+ G + Sbjct: 5 IRKDDIEAVRNAVKIDEIIGEHVALRPAG----IGSLKGLCPFHDERTPSFNVRPHLGMF 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + F E+V+ LAA AG+ L + + + + L+ Sbjct: 61 HCFGCGESGDVISFVQKIDHLPFTEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA +F+ L + + +L ERG F +GYAP S SL HLR KGF+ Sbjct: 121 AHRVAEEFYQQQLASPEAHKGRTFLAERGFTQAMCAHFGVGYAPASWDSLTRHLRSKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237 +++I +GL S YDRFR RL++PIR G + FG R L + KYLN+P Sbjct: 181 DQEIQISGLGSQ--GSRGVYDRFRGRLVWPIRDITGATVGFGARRLDDSDKESPKYLNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + + +++VEGY DV++ AGV N V++ Sbjct: 239 ETPIYKKSQLLYGLDLAKKTIA----------TEHKVVIVEGYTDVMAAHVAGVTNAVAT 288 Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338 GTA ++++ + ++ FDGD G +AA +A Sbjct: 289 CGTAFGSEHVKIIRRLLGDHADPAAGVLLSTGRAHGSEVIFTFDGDSAGQKAALRAYGED 348 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G+DP G A L+ +PL + + + Sbjct: 349 QNFAA---QTFVAVAPGGQDPCDLRLSQGDQAIVDLVNSRIPLFEFAIRSVLSQMDLRSA 405 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456 + R + + HIKD+ LR Y++ + L GR AR Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRQLAGWLGMDIPTVEQAIRAAGRVEVLSHEARP 465 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515 + + + + S E L ++ HP + ++EL + Sbjct: 466 GEIEMAGAGRPVPASERRGPEDPVSRIERQALEAVLQHPLYAVGSGFEELDGQSFTVPTH 525 Query: 516 QKLWSFL----------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + + F + + + E + Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATLAASRRFVQ--VVLETAGEFIGPAVT 583 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + A DVR + +A R L+R+ E ++++ + + + Sbjct: 584 QLAVAPLPVAGEADVRSYCRGVVAAMVRM-DLTRKLGEARAALSRLNE--DDPTYSEMFR 640 Query: 620 ILHEVHIQIH 629 L + + Sbjct: 641 ELMRLEQRRQ 650 >gi|188585840|ref|YP_001917385.1| DNA primase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350527|gb|ACB84797.1| DNA primase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 626 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 161/636 (25%), Positives = 293/636 (46%), Gaps = 43/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + + + +YV+ ++ YW CPFH EKTPSFH + K Sbjct: 4 RIPQEIIERIQAEADLVEIASRYVNLKKQGK-----YYWGLCPFHSEKTPSFHISPEKQL 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLI 118 YYCF C G+ FL ++ +F+E Q+L G+ LP + ++ + + + Sbjct: 59 YYCFGCQAGGNVFKFLESIEQLNFVEVCQKLGEELGIELPADSQDSQELSQEMQEREIIK 118 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + A +FF + L N K YL +R ID + F +GYAPD+ L + L++KG Sbjct: 119 KANKYAANFFRYVLMNTETGKSGRKYLADRKIDKQTMADFFIGYAPDNWTGLSDFLKKKG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNS 236 F+EE +++AGL YDRFR R+IFPI + RG+VI FGGR L + E KYLNS Sbjct: 179 FTEELLVKAGLSNRRKYREGVYDRFRGRVIFPIYNQRGEVIGFGGRLLEESEKQPKYLNS 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F+K +LY A ++K + +++EGY DV++ Q GV V+ Sbjct: 239 PETPVFNKRLSLYGLNLAFKTIRK----------ENHALVMEGYTDVITAHQFGVNTAVA 288 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+LTE Q +L+ + + + FD D G A + +++ G V L Sbjct: 289 SLGTSLTEEQAKLIRNNASKAYIAFDADAAGETATLRGLEI---LQSKGLDVLICQLPES 345 Query: 357 EDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG F+ K++ +LPL + ++ +N++ +T + + + + I+ I Sbjct: 346 YDPDEYLKNYGLENFQKKILDTALPLTEYQIRQAAKNKNLSTIEGKKQYVTEIIPIISKI 405 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-------DQKGPSQRLMQ 468 + R Y + ++L + +E Y R +N +R ++K + Sbjct: 406 DNAVEREEYLNQVSEQLGISQEALNSELMKYFRKNYRNKNYRKMDKTGVNRKNKRKNNGS 465 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ E L+ +++ P +E + L + ++ L + L+ Sbjct: 466 ETVKFADKRTPREKAEEGLVALMLHFPEYTEEVNKFLYPEDFSSDTLALIVHKLYQLKNH 525 Query: 529 QKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + Q L + ++ +L + D+ + + + + Sbjct: 526 DIELDLSNLTQELRDHPDAENIITKLGMKDFPQ----------PKDIEKFVKDCV-FRIK 574 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + Q+EE++K+++Q+ E ++ ++ L + Sbjct: 575 ESRIKSQREELQKELSQINPDHEPDRYREILRKLQD 610 >gi|227329606|ref|ZP_03833630.1| DNA primase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 584 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 170/608 (27%), Positives = 281/608 (46%), Gaps = 49/608 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL +RG+ + I F +G+AP ++ + + Sbjct: 119 LMGQLSGFYQQALSQSVGTPALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHAELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + ++LPL L++ + ++PD R +L I + + Sbjct: 347 DTLVRKEGKVAFEQRMEQALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + ++ + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L I D L+ L + Sbjct: 452 -----RILIGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNVSPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591 ++ + + + L+ + + E + + + Y Q L R L Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565 Query: 592 S-RQKEEI 598 + ++K+E+ Sbjct: 566 NTKEKKEL 573 >gi|154502791|ref|ZP_02039851.1| hypothetical protein RUMGNA_00605 [Ruminococcus gnavus ATCC 29149] gi|153796674|gb|EDN79094.1| hypothetical protein RUMGNA_00605 [Ruminococcus gnavus ATCC 29149] Length = 591 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 152/615 (24%), Positives = 263/615 (42%), Gaps = 45/615 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSEEVIEEVRTKNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSREKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+++ LA AGV LP + + + +T L+ Sbjct: 56 MYYCFGCGAGGNVFTFLMDYENFSFVEALKFLADRAGVVLPEMEYSKEAKARADRKTQLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK+ + K H YL R + I+ F LGY+ L +LR++G+ Sbjct: 116 EINKLAAQYFYVQLKSEQGKTAHAYLTGRQLSEETIKAFGLGYSSKYSDDLFRYLRKRGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E+ I +AGL I+ D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 TEDLIRQAGL-INTDEKNGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + + ++ EGYMDV++L QAG N V+SL Sbjct: 234 TEIFDKSRNLYGLNRAR------------TSRKPYFLVCEGYMDVIALHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G RAA +A+ + G + + +D Sbjct: 282 GTALTTGHAALIKRYVQEVYLTYDSDEAGTRAALRAVPI---LKEAGITAKVIRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G FE+ I + + + N+P+ + + +D+ Sbjct: 339 PDEFIKNLGAEEFERRIGNARNGFMFGLEMLEKEYDMNSPEGKTAFFQEAARRLIGFEDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + + K A P +R Q++ + Sbjct: 399 LERNNYIEAVAGTYRATVESLQKLVA-------KMAVREGMAKPVERPKQATGSEKPKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + LL +I + + ++ + + FL+ + E P +I Sbjct: 452 GAKISQKILLTWMIEDRRLFGIIQKYISPEDFPEPLYHTVAEFLYHQYEEG-ELNPAKIL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-------------QALALY 585 + L E + + + + Sbjct: 511 NHFTKEEEHREAASLFHTKIQKLTTKEEREKALQETIVKVKTHSIDYRTMHLEPTDIIGL 570 Query: 586 KRFRLLSRQKEEIEK 600 ++ R+ ++++K Sbjct: 571 QKLMEEKRKLDDLKK 585 >gi|197301815|ref|ZP_03166885.1| hypothetical protein RUMLAC_00541 [Ruminococcus lactaris ATCC 29176] gi|197299255|gb|EDY33785.1| hypothetical protein RUMLAC_00541 [Ruminococcus lactaris ATCC 29176] Length = 594 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 161/628 (25%), Positives = 267/628 (42%), Gaps = 48/628 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 5 MYYSEELIEEVRSRNDIVDVISGYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 59 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+++ LA AG+ LP + +++ ++ ++ Sbjct: 60 MYYCFGCGAGGNVFTFLMEYENFSFVEAMKYLADRAGIELPEQEYSKEAKERADLKATIL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A +F+ LKN R + YL +R + I F LGY+ L ++LR KG+ Sbjct: 120 EMNRLAAKYFYVQLKNERGFHAYRYLKDRQLSDEMILAFGLGYSNPYSDDLYKYLRGKGY 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SEE I +AGL I+ D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 180 SEELIRKAGL-INTDERQGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + + +L EGYMDV+SL QAG N V+SL Sbjct: 238 TVVFDKSRNLYGLNRAR------------TSRKPYFLLCEGYMDVISLHQAGFTNAVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D DD G RAA +A+ + G + + +D Sbjct: 286 GTALTAGHASLIKRYVKEVYLTYDSDDAGTRAALRAVPI---LREAGISAKVIRMDPYKD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G +EK I + + N+P+ + E + + +D+ Sbjct: 343 PDEFIKNLGAEEYEKRIQAARNGFMFSLEMLEREFDMNSPEGKTEFFREVSRRLLTFEDE 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ Y + K A P R ++ V+ K Sbjct: 403 LERNNYIEAVA-------TAYRISRDSLDKMVAKTAVSAGMARPVVRPKRADGVEKKKED 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L + ALL +I + + ++ + + + + L+ E P +I Sbjct: 456 GIHLSQKALLTWMIEEERLFDQISNYISPGDFTEDLYRTVAELLYEQRKEGG-LNPAKIL 514 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L + E + + R+ + L + + Q + Sbjct: 515 NHFTGEEEHREVASLFN--------TRIRELHTKEEREQALRETILKVKASGIDYQTMNL 566 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHI 626 + L+ ++ Sbjct: 567 --------DPTDMAGLQKLMEEKRKLEN 586 >gi|225575012|ref|ZP_03783622.1| hypothetical protein RUMHYD_03092 [Blautia hydrogenotrophica DSM 10507] gi|225037763|gb|EEG48009.1| hypothetical protein RUMHYD_03092 [Blautia hydrogenotrophica DSM 10507] Length = 593 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 50/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I ++I QYV R+ + Y+ CPFH+EK+PSF + K Sbjct: 1 MRYSDDIIEEVRTKNDIVDVISQYVKLQRKGS-----SYFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F+E++Q LA A V LP VD + ++ + L+ Sbjct: 56 MYYCFGCGAGGNVFTFVMEYENFTFVEAMQYLAERASVELPKVDYSKEAKEAADKKAALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F++ L+ ++ YL ERG+ ++ F LGY+ L ++L+ KG+ Sbjct: 116 EINKLAAQYFYYQLRRQNGQKAWKYLVERGLTEETMKKFGLGYSDKYSDDLYKYLKGKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E + ++GL YD+F NR+IFPI +VI FGGR + KYLNSPE Sbjct: 176 KDEVLRDSGLFNVD-ERRGMYDKFWNRVIFPIMDVNSRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A +K ++I+ EGYMDV+++ QAG N V+SL Sbjct: 234 TKIFDKSRNLYGLNAARTTRRK------------YLIVCEGYMDVITMHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT LL + + + L +D D+ G+RAA + I + G V L+ +D Sbjct: 282 GTALTSGHASLLKRYTQEVRLLYDSDEAGIRAALRGIPI---LREAGVATRVVNLAPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF++ + ++ + +N + + P + E + + ++ Sbjct: 339 PDEFIKALGAEAFQERLDRAVNGFLFRVQAAQKNYNLSDPQGKTEFFHQVAEMLLEFPEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +AI + ++ S R K + KG+ Sbjct: 399 LERSNYIEAIAQEYRISPEELKRAVSRQAMKGTVAERRMVPKETRKS-------KGQKEN 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L L N P + L + +++ LF E + Sbjct: 452 GAQKAQKLMLTWLANEPETYSTVKKYLGPEDFTTELYRRVAGMLFEQL-EDGQVSLARLL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + L + + + + AL + + L Q E++ Sbjct: 511 NPFTDSEEQTEITSLFHADIHLE--------SQEEKNRAFADAL-IRIKENSLREQTEKL 561 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A + E LI ++ ++ + + Sbjct: 562 --------APTDIEGLQRLIQEKKKLE-EMSRRRGE 588 >gi|282861772|ref|ZP_06270836.1| DNA primase [Streptomyces sp. ACTE] gi|282563588|gb|EFB69126.1| DNA primase [Streptomyces sp. ACTE] Length = 635 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 147/660 (22%), Positives = 262/660 (39%), Gaps = 54/660 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLTFSETVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A DF+ L A + +L ERG D A F +GY+P L +LR KGFS Sbjct: 120 AHKIAADFYREQLNGAEAEIGRRFLAERGFDQDAAAHFGVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 + ++I +GL D DRFR RL++PI + G + FG R L ++ KYLN+PE Sbjct: 180 DRELISSGL--SQDGRRGPIDRFRGRLMWPISDTSGDTVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GT+ +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTSFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP G A L+ PL + ++ TP RA + Sbjct: 345 PDNMDPCDLRLAKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAPVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-----------KGP 462 IK+ ++ + + L L +++ + G W ++ R + Sbjct: 405 RIKNSSSQHEVAVQLAGLLGILDTQFVVKRVGQLARWARDRGERGPAPGGPSRGGSGQHQ 464 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + S L E LL + PA++ + + + + + Sbjct: 465 ASAPRPPSGPALNLRSPAHRTERELLKLALQKPALVAPAFDAYGEDEFTAPPYAAVRRCI 524 Query: 523 FSDFVEQKYFLP-----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 ++ + + L+ +L +V + + Sbjct: 525 AEAGGAEQGLAETRDYLAAVLDAAPDDTVRNLVTELAVEVFHG-----------KSIDET 573 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 Y + R R + R+ +++ +A++ + A + + + + S A Sbjct: 574 YAGMQLVQVRLRAVDRRIHDVQGSLARLGHNVAPDHLAAAQNEVWVLQQYAESLRSHGAA 633 >gi|227488422|ref|ZP_03918738.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091636|gb|EEI26948.1| DNA primase [Corynebacterium glucuronolyticum ATCC 51867] Length = 625 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 143/640 (22%), Positives = 246/640 (38%), Gaps = 36/640 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + + PI ++G+YV PF DEKTPSFH + G+ Sbjct: 5 RIPEEDIDYIRENTPIEEIVGEYVQLKPAGA----DSLKGLSPFKDEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++ FS GD SFL L +F E+V+ A G + +K + L+ Sbjct: 61 FHDFSSGEGGDVFSFLMKLEHLTFPEAVEYCADKIGYHINYQGGGTGTREKAGTRQRLVA 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A FF L+ +R YL ERG + F GYAP +L +HL + GFS Sbjct: 121 INAEAHRFFVEKLQEPEAERARAYLTERGFTAEHARHFGCGYAPGGWDTLTKHLLRMGFS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E++ AG+ DRF RLI+PI++ G VI FG R L + KYLN+PE Sbjct: 181 AEELEAAGVTS--MGRRGPIDRFHRRLIWPIKNLAGDVIGFGARKLFDDDKLGKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + ++VEGY DV+++ AG+ V+S Sbjct: 239 TMLYKKSKVLFGIDLAKRNIA----------QGHQCVVVEGYTDVMAMHAAGITTAVASC 288 Query: 299 GTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E L+L+ +L I+ FDGD+ G +AA +A + Sbjct: 289 GTAFGEDHLQLIRRLMLDDRTFRGEIIYTFDGDEAGQKAAMRAFEGSQEFSG---SSFVA 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A LI +P+++ + K T + R + + Sbjct: 346 VAPGGMDPCELRQDKGDVALRDLIARRMPMLEFVVKTILGQYDVGTIEGRLQAVRRVVPM 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I I+D LR Y+ + + L + ++ A +G S + +++ Sbjct: 406 IGAIRDPALRSQYALQLSGWVGWLNEDELSRMVEDASRRPAAAPQAATRGASPQPTPTTV 465 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + L + P + + EL + + + + + + Sbjct: 466 LPDPRDPALWP-QRESLKIALQAPDLAGASFDELDPEGFFHPVYRTIRDGIAAAGGASGG 524 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + +K L + + D + Y ++ Sbjct: 525 DGKAGWIAAITDAIVDPAVKNLVSALAVEEIR------TDADHFEAYMDGAFARLEEGVV 578 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + Q ++ +++ + E + S L + ++ Sbjct: 579 ANQISNLKATLSRTRPSDDPEAYNAMFSDLLVLEQVRQEL 618 >gi|269836447|ref|YP_003318675.1| DNA primase [Sphaerobacter thermophilus DSM 20745] gi|269785710|gb|ACZ37853.1| DNA primase [Sphaerobacter thermophilus DSM 20745] Length = 615 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 160/639 (25%), Positives = 269/639 (42%), Gaps = 67/639 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + I +IGQ+V + N + CPFH EKTPSF ++CF C Sbjct: 6 VDQVRERTDIVEVIGQHVTLRKAGRN-----FKGLCPFHQEKTPSFIVFPETQTFHCFGC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 V GD +F+ F E++Q LA AGV L P + + L L A F Sbjct: 61 GVGGDVFNFVMQFERVDFREALQTLAQRAGVTLEQAAPPPPEVVERHARLYELNARAASF 120 Query: 128 FHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 + L N L+ RG+D E F+LG+APD +L + ++G ++E+++ A Sbjct: 121 YAWVLWNSPHGAPGRELLERRGVDRATAERFQLGFAPDRWDALLTWMLKRGATQEEVVAA 180 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 GL D+ +YDRFRNRL+FPIR G+V+ FGGR L KYLN+ +T +F KGK Sbjct: 181 GLATQRDDG-GAYDRFRNRLMFPIRDREGRVVGFGGRAL-GDAQPKYLNTAQTAIFDKGK 238 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY A + +++ + +++VEGYMD ++ Q G +NVV+S+GTALTE Q Sbjct: 239 ILYALDLAQDAIRR----------THEVVVVEGYMDAIAAHQHGFENVVASMGTALTEEQ 288 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIPGNRV 348 ++ + + RI+L D D G A + +D LV + Sbjct: 289 VKQIRRGVDRIILALDADAAGQMATLRGLDVLRESLGEADRPVLDARGLVRFERTLKADI 348 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 L G+DPD IR A+ + E+ PL+D + P E++EL + Sbjct: 349 RIAPLPEGQDPDDLIR-RDPDAWRAAVAEAKPLLDFYIDAVIGDTPPTDPREKSELVDRI 407 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I D+ +R +Y + RL + R ++ +R ++ + Sbjct: 408 GPVVREIGDEVVRAHYVAEVSRRLGLPEHVILRARPATSRRIRREDAYRPRRPIASP--- 464 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 E LL ++ +P I+ ++ + + + L L E Sbjct: 465 ---------------EEHLLALVVTYPEIVAPLIPQVPEEDLLDTRHRALLRLLTGVTPE 509 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q + + E ++ L L + +R + + + +R Sbjct: 510 QAAAVVAD-----PPEELREHVEAL------RELMAERPPVYPGQIRIEFDEVIRRLRRE 558 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R + +++ +I + G+ E +I ++ + + Sbjct: 559 RF-DFRMAQLQAEIHEAERAGDREALRHIIGLIETLKSR 596 >gi|332086938|gb|EGI92073.1| DNA primase [Shigella dysenteriae 155-74] Length = 582 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 177/629 (28%), Positives = 291/629 (46%), Gaps = 53/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ SLK YL++RG+ I F +G+AP ++ + + Sbjct: 119 LMDGLNTFYQQSLKQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPEN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 T+ T ++LL+ + DGD G AA++A++ L ++ G ++ F+ L GED Sbjct: 287 TSTTADHIQLLFPRDQQCHFAVIDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGED 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK AFE + +++PL L+ +TPD RA L I+ + + Sbjct: 347 PDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGE 406 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR Y Q + ++L L + A P +L ++++ Sbjct: 407 TLRIYLRQELGNKLGILDDSQLERL-------MPKAAESGVSRPVPQLKRTTM------- 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + L L+ L + + Q ++ Sbjct: 453 ------RILIGLLVQNPELATLVPPLENQDENKLPGLG-LFRELVNTCLPQPGLTTGQLL 505 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L++L +W + NI Q + +L + LL ++EE+ Sbjct: 506 EHYRGTNNAATLEKL-------SMWDDIADKNI--AEQTFTDSLN-HMFDSLLELRQEEL 555 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T E+ L ++ E+ + Sbjct: 556 IAR--EHTHGLSNEERLELWTLNQELAKK 582 >gi|95929000|ref|ZP_01311745.1| DNA primase [Desulfuromonas acetoxidans DSM 684] gi|95134901|gb|EAT16555.1| DNA primase [Desulfuromonas acetoxidans DSM 684] Length = 603 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 290/632 (45%), Gaps = 36/632 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I + + I +++ YV N + CPFH EKTPSF+ N S+ Sbjct: 3 RIPEDLISQVRERVDIVDVVSGYVKLKHSGDN-----HLGLCPFHSEKTPSFNVNSSRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 ++CF C V G+ SFL + G +F ++V+RLA GV +P P+ ++ + +L Sbjct: 58 FHCFGCGVGGNVFSFLMRMEGLAFPQAVKRLADQVGVVIPDDEPSPEEVRRRLEREELAE 117 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E AT F+H L + R + Y+ RG DS A+ F+LG++PDS +L EHL +G Sbjct: 118 VYEQATRFYHDILLADPRGAQARGYIRRRGFDSEAVRRFRLGFSPDSWDALCEHLTSEGT 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +K + GL+ D + +D FR RL+FPI G+V+AFGGR L KY+NSPE Sbjct: 178 DLDKARQLGLIRRSDKTGNDFDMFRQRLLFPIEDLSGKVVAFGGRVL-DDSLPKYINSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + L+HK + LY + A +++ +I+VEGY D L+L QAG+++VV++ Sbjct: 237 SALYHKSRLLYGLYQAKQAMRR----------ERAVIVVEGYFDHLALVQAGIEHVVATC 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ ++L + R+VL FD D G + + L G V + L G+D Sbjct: 287 GTALTDDHAKILKRYVERVVLLFDEDAAGQK---ACFRAMPSLLQQGLEVMTLSLPAGDD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R G AF + + E+ +++ + E + + +A + + + D Sbjct: 344 PDSCVRREGAEAFLQRLNEARSAIEVHMEVTLEQA-GDRAEAQARAIDTVLQMMQRVPDD 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + + R + + + + + + V+ + + Sbjct: 403 IQRNLHLGQLAQRSGVTVELLQRQLERT--QVEDQPPAPRPQPAPRPAVAPRPVEPEEIQ 460 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL ++ + ++ D +DN QK+ + EQ+ E + Sbjct: 461 GDFKAQKWLLTLMLADGGVSGTVEEQGIDALFDNAVCQKVAQQIQRAHAEQREP-GEWML 519 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + +LL QL VR+ L S E D RQ ++ L +++ E+ Sbjct: 520 DQCEDPRAQDLLTQL--LVREQELVSDDIEKIFGDCRQAVVRS--------QLKQRRAEL 569 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++EK + L ++ ++ + Sbjct: 570 HTQMRAAEQHGDSEKQTACLQELTRINRELKR 601 >gi|56963454|ref|YP_175185.1| DNA primase DnaG [Bacillus clausii KSM-K16] gi|56909697|dbj|BAD64224.1| DNA primase DnaG [Bacillus clausii KSM-K16] Length = 603 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 158/633 (24%), Positives = 271/633 (42%), Gaps = 40/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + ++ I +IG+YV ++ Y CPFHDEKTPSF ++ K Sbjct: 4 KIPDEKLTEVREASDIVEVIGEYVQLKKQGRQ-----YGGLCPFHDEKTPSFSVSEDKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 Y+CF C G+ +FL L G SF E+V LA A + LP + ++ + + Sbjct: 59 YHCFGCGAGGNVFTFLQELKGWSFSETVSHLAERAKIALPQMQKTETDKPEDARIRQMKK 118 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+A +H L Y ER IE F++GYA + +L G Sbjct: 119 GHELAASTYHSILTLTEEGAPGRVYAQERLFTQDQIEHFRIGYALNDWETLAVIFETNGL 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + E+GLL YD FR RL+FPI S+G V+AFGGR + +G+ KYLNSPE Sbjct: 179 DLAVMAESGLLAKRKQGTGYYDLFRERLMFPITDSQGSVVAFGGRAIGEGQP-KYLNSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHK K L++ A ++K + +LVEG DV++ +AGV NVV++L Sbjct: 238 TPIFHKAKTLFHMHEARPSIRKQNKA----------LLVEGAFDVMAAWKAGVTNVVATL 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTAL+ +LL + + ++LC+DGD G A KAI + G +V+ LL G D Sbjct: 288 GTALSSDHAKLLRRNAEEVILCYDGDRAGREAIRKAIPV---LEEAGCKVSICLLPEGLD 344 Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ +G+ AF L E L ++ + ++ +R + + + ++ Sbjct: 345 PDDYVKQHGEEAFVRILDNECLSVMAFRMLDLKQGKNMQNEGDRLQYIEEIVQMLAKLEH 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKL 476 + YY Q + + E S R K+ + + Sbjct: 405 SVEQEYYLQQLAESFTLPMDVLRQELSRAERLLKQTKETPKALPRAEKPTSGRKQGSARP 464 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ ++ ++L ++ E Q L+++L S + + Sbjct: 465 VPAHVKAERILLAYMLQDTEMVWRVSEKLGT-GFNLEEHQALYAYLLSFVTREPDASMKR 523 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + ++L + + E + ++ ++ + Y ++ L Q++ Sbjct: 524 FVESLED-------RRLAKLAAYLLMQPLKNECSDEELADYIKR-IEQYPKWVKLKEQQQ 575 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + A L L + ++ Sbjct: 576 AARFE-------QDPIRAAKLQMELIRLKKELQ 601 >gi|291533681|emb|CBL06794.1| DNA primase, catalytic core [Megamonas hypermegale ART12/1] Length = 604 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 167/639 (26%), Positives = 289/639 (45%), Gaps = 41/639 (6%) Query: 1 MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M DF++ + I ++I YV +R YW CCPFH+EKTPSF Sbjct: 1 MRTQNLHDDFVEQVRSSSDILSVISSYVHLKKRGN-----RYWGCCPFHNEKTPSFSVVP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQT 115 +G +YCF CH G+ F+S + S+ E+++ A +P+P + K+E+ + Sbjct: 56 QQGIFYCFGCHAGGNLFKFISLIENISYYEAIKLQAQRLNIPIPTTKKSADELKQEQQKD 115 Query: 116 DLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++ E+A FFH+ L + + + Y R I+S I FKLG+AP+ L Sbjct: 116 SLFKIHELAGSFFHNCLTRTSLGEAGRAYFSSRQINSDIITKFKLGFAPNLWDKLFTSFT 175 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G ++E + +AGL I +S YDRFRNR+I PI + GQ+ FGGR ++ +S KYL Sbjct: 176 KRGITKELLAKAGL-ITIKDSGKVYDRFRNRIIIPIMNEHGQICGFGGRIINPNDSPKYL 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET++F+K L+ A ++ ++F I+VEGYMD ++L + N Sbjct: 235 NSPETLIFNKRHLLFGLDHAQKSIK----------ENNFSIVVEGYMDAIALHSHNITNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTA T Q R + + SP I C+D D+ G A +A+ + G V + + Sbjct: 285 VASLGTAFTAQQCRKILRYSPNIYFCYDSDNAGQAATMRALAIASS---NGANVKVITIP 341 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD F+R +G F LI ++LPL++ + ++ NT + + L + + Sbjct: 342 DGKDPDEFLRHHGNKEFYALIDKALPLMEYQLQYVLKSTDRNTLEGKLLAVNQLMPLLAN 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I + R Y I + L ++ ++ D + + S Sbjct: 402 ITNTVERNEYIIRISNVLGIDEGVIRSDLQRQNS--QRKFNAYDVSTDNLPGINSRKAFS 459 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + ++ ++ + + +IL + + N ++ +L S + F Sbjct: 460 EKKDALTMAGRCIIKKIWHEASILDYVLNLIPAEEFPNKTHGEILKYLASTLANNQPFTD 519 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + ++L + + EL L E D Q + L L +R+ L S Sbjct: 520 IDAAEKLSDTAYSELSHCL------------VEEFTTDDDIQLTEDCLKLLRRYYLNSNY 567 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 E + +A + + + I ++ +++ + S Sbjct: 568 --EKHRLLADELQRNGDSRFLEELKISQQIRMEMDNLSS 604 >gi|52081068|ref|YP_079859.1| DNA primase [Bacillus licheniformis ATCC 14580] gi|52786448|ref|YP_092277.1| DNA primase [Bacillus licheniformis ATCC 14580] gi|319644973|ref|ZP_07999206.1| DnaG protein [Bacillus sp. BT1B_CT2] gi|52004279|gb|AAU24221.1| DNA primase [Bacillus licheniformis ATCC 14580] gi|52348950|gb|AAU41584.1| DnaG [Bacillus licheniformis ATCC 14580] gi|317392782|gb|EFV73576.1| DnaG protein [Bacillus sp. BT1B_CT2] Length = 607 Score = 367 bits (941), Expect = 4e-99, Method: Composition-based stats. Identities = 151/636 (23%), Positives = 285/636 (44%), Gaps = 40/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVEQVQKSADIVEVIGEYVQLRKQGRN-----YFGLCPFHGENTPSFSVSGEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118 ++CF C G+ SFL + G SF E+V LA + LP + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFTEAVSHLADKYQIDLPEQVAAVSAYSTGSSDEQKMA 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ F+HH L + YL ERG IE F++G A DS + + L ++G Sbjct: 119 EAHDLLKKFYHHLLVNTKEGQAALDYLLERGFKMEQIEQFEIGCALDSWDFITKFLERRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F + AGL+I +N +DRFRNR++FPI G +AF GRT GE KY+NSP Sbjct: 179 FDLALMERAGLIIRRENGDGYFDRFRNRIMFPIHDHHGTTVAFSGRTF-TGEQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K K LY+F A +++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFRKSKLLYHFHQARLHIRKEERA----------VLFEGFADVISAVTSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE +++ + ++LC+D D G A KA ++ G V ++ G Sbjct: 288 MGTSLTEEHAKIIRRNVGEVILCYDSDHAGYEATLKAAEI---LQKKGCNVKVAMIPDGL 344 Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I+ +G F+ ++ + + ++ + R+ + +R + ++ + Sbjct: 345 DPDDYIKKFGSEKFKNDVIGASVTMMTFKMNYFRKGRNLSDEGDRLAYINDVLKEVSLLS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHS---GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + Y + + + F+ + S + + +D K + ++ K Sbjct: 405 GPLEQEIYIKQLANEFSISFESLKDQLSVFEKQAASRSRESSRQDSKERQAAVSRAPRRK 464 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L E LL +I+ ++++ + + ++ ++ + + ++L++ + E Sbjct: 465 TGLRPAHENAERMLLAHMIHDRDVIRKVLERVG-FEFNLDQHRAIAAYLYAMYEEGADIS 523 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +E+ +R+ ++ G+LL + L E Y + + Y+ + ++ Sbjct: 524 IQELFKRVEDQELGQLLTDI--------LMLQVNEELSEAELSDYVKKVLNYRNWSMIKE 575 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + E A+ + + K A L + +++ + Sbjct: 576 K----EAARAEAERQKDFIKAATLAQEIVKLNRSLK 607 >gi|311747519|ref|ZP_07721304.1| DNA primase [Algoriphagus sp. PR1] gi|126574881|gb|EAZ79252.1| DNA primase [Algoriphagus sp. PR1] Length = 645 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 166/656 (25%), Positives = 292/656 (44%), Gaps = 44/656 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + + I ++G YV ++ N WACCPFH+EK+PSF + +K Sbjct: 1 MGISKLTTEKVKERVDIEEVVGDYVPLKKKGQNL-----WACCPFHNEKSPSFSVSPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDL 117 Y CF C GD + F+ + G F E+++ LA G+ + P+ ++ + L Sbjct: 56 IYKCFGCGKAGDPIQFVMDVEGVGFTEAIRHLAGKYGIEVEEDEERTPEQDQAYSERESL 115 Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + A DFF +L + K + Y ERG + IE F LGYA D L + + Sbjct: 116 YIALGFARDFFVKNLLSPEGKSIGLSYFKERGFSNSIIEKFDLGYALDGWDHLLKAAKSS 175 Query: 177 GFSEEKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYL 234 GF EE +++AGL+ + + YDRFR R+ F I + G+ I FG R L+K + KY+ Sbjct: 176 GFQEEILLKAGLILQKEGDPSRVYDRFRGRVTFAIHNIGGKPIGFGARILTKDKNQPKYI 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET ++HK LY + A ++ LVEGY DV+S+ +G++NV Sbjct: 236 NSPETAVYHKSDVLYGMYQAKKAIRAK----------DNCYLVEGYTDVISMHLSGIENV 285 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S GT+LTE Q++L+ + + ++ + +DGD G++A+ + IDL L G V V+ Sbjct: 286 VASSGTSLTEGQIKLIKRFTDQVTVLYDGDPAGIKASLRGIDL---LLEGGLNVKAVVFP 342 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDS+ R G AF+ +VE+ ++ P +AE+ + I Sbjct: 343 EGEDPDSYSRKVGSQAFQDYLVENSRDFIGFKIGLYQDEFAKNPIRKAEVIREVIQSIGK 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSS 470 I D +R Y+Q L+ TE + +++ + ++ P L + Sbjct: 403 IPDPIVRSVYAQEASSLLEVEEDVIHTELNKSLIKTQRDQFQKREEAPPHDLGFEEYLPT 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPA---------ILQEQYQELADIRYDNNELQKLWSF 521 K S ++E ++ L+N+ + E AD++++ +K+ Sbjct: 463 EEKSTASDSLKIQEKEMIRLLLNYGWEKIDHDELHLCDYLLAETADLKFETPVYEKILIT 522 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ- 580 + + + ++ + + + WS + I Sbjct: 523 YRQILNMGEAPTIDFFIRHQDSEMKSVVIDLITPRHEVSTHWSERHQIFINKENDNLSLT 582 Query: 581 --ALALYKRFRLLSRQKEEIEKQIAQVTAKGEA----EKTAILISILHEVHIQIHQ 630 L + R++ + EE + +I ++ + E+ + L +V ++I + Sbjct: 583 GFKSILRLKRRVVQKMMEEAKMKIKTAESEKDETADIEELQKIYFELKKVQLEIDK 638 >gi|330505279|ref|YP_004382148.1| DNA primase [Pseudomonas mendocina NK-01] gi|328919565|gb|AEB60396.1| DNA primase [Pseudomonas mendocina NK-01] Length = 667 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 176/678 (25%), Positives = 292/678 (43%), Gaps = 88/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++++ LA AG+ +P + + ++ + + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAIEELAKRAGMDVPREESGRGHKPRQPVDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A + + +LK+ + K YL RG+ F +G+AP +L + L Sbjct: 120 LNAAAEHYRQALKSHPQRKYAVDYLKGRGLTGEIARDFGIGFAPPGWDNLLKQLGADALQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAENGRRYDRFRDRIMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + I++VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNRDL----------DEIMVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRIVPSVLFCFDGDAAGRNAAWRALESTLPSLQDGRRARFLFLPDGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF + + PL D +++ E + + +A L I+ I Sbjct: 349 DTLVRAEGTDAFRARINQHAQPLADYFFQQLCEEADPRSLEGKAHLVTLAAPLIDKIPGN 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------------RL 466 LR Q + + L L + +++ + R + L Sbjct: 409 NLRALMRQRLSE-LTGLSGEAMSQVASAPRSHAPSTPSHTHSSDYPDYGDIPDSAYYDSL 467 Query: 467 MQSSLVKGKLSKKPSLREAA---------------------------------------- 486 + + E Sbjct: 468 PDVGGYEQPAPPQQQHYERQNEGGKGSWKKEGGGKWSKKGKGDFSPRAPRTAVSVESPHL 527 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 L TL++HP + Q+ + + E +L L + ++ R Sbjct: 528 IALRTLLHHPQLAQKVED---VSHFADEEDTYAQLLVALVGALQKTPNLRSLQLIARWHG 584 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 G LL+ L + W + ++ Q + + + R+++ + I Sbjct: 585 TEQGRLLRALAEKE-----WLIQGD----NLEQQFFDTITTLANSQSQRRREKALRSIIH 635 Query: 604 QVTAKGEAEKTAILISIL 621 + ++ E+ +L Sbjct: 636 KSPSELTDEEKTLLREHY 653 >gi|325125920|gb|ADY85250.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 612 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 283/640 (44%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D ++ FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 ++ E+GL + + +DRFR+RL+FP+ G ++AF GR +S E KYLNSPET Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLTPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E +L + + E + ++ + + L L K + R Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|299535818|ref|ZP_07049139.1| DNA primase [Lysinibacillus fusiformis ZC1] gi|298729018|gb|EFI69572.1| DNA primase [Lysinibacillus fusiformis ZC1] Length = 610 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 143/636 (22%), Positives = 273/636 (42%), Gaps = 39/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I ++I +Y+ +R N ++ CPFH E+TPSF + K Sbjct: 8 KIPEEVIEQIRTQSDIVDVISEYMQLTKRGRN-----WFGLCPFHGEQTPSFSVSTDKQI 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ ++F+ + G SF ++V +L G+ L P +K K + Sbjct: 63 FHCFGCGAGGNAITFVMDIEGISFPDAVVKLGERVGIHLDVEPSFPGGTKKISKADERMK 122 Query: 119 RLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 A DFFHH L + YL ERG IE +G++ S +L L +KG Sbjct: 123 EAHAFAADFFHHLLLNTEDGEEPLNYLLERGFTRELIESNNIGWSLPSFDALTILLERKG 182 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNS 236 ++ ++I E+GL+I + +DRFR R++FPIR G++IAF GR LS E KYLNS Sbjct: 183 YNLQEIAESGLIIKREGEERYFDRFRGRIMFPIRDENGKIIAFSGRILSSNGEEAKYLNS 242 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F K + LYN A ++K + ++L+EG+MDVL+ GV NVV+ Sbjct: 243 PESPIFQKSEVLYNLDKARTSIRK----------NRQVVLMEGFMDVLAANSVGVMNVVA 292 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT+LT + L +L +I +C+DGD+ G AA +A L +V+ +L Sbjct: 293 TMGTSLTNQHITKLKRLVEQITICYDGDNAGFDAAKRAAQL---LHTERMKVDIAVLPEK 349 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +I G F++ ++ + + + N++F ++ + + + Sbjct: 350 LDPDEYIHTLGGQVFKEQILEKPHAYIAFMMMHARRNKNFQFENDTLQYIQEVLEHLVGR 409 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + + + + ++A+ + P+Q + K Sbjct: 410 SSPVERDLYIRQLSNETNISEEAIYAQFRKLEANQVRSAKV---EMPTQIPSMPVTQQQK 466 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL ++++ ++ + + + ++ L + E + + Sbjct: 467 PMDAAERAERLLLAHMLHNIDVVDRVLRSEQKEPFVRDAYMAVFVRLVGFYEEYGHPDYQ 526 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + +++ + +A E + ++ + + ++ Sbjct: 527 RFVEILDDAELRKIV-----------MEAALVERDPDQAEAEVMDSIR-QLQKHRIEQEI 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + E + + + + + I Sbjct: 575 YQKMHESKEAEKMHEYARALEIAQQIIHLRKSLSAI 610 >gi|317125238|ref|YP_004099350.1| DNA primase [Intrasporangium calvum DSM 43043] gi|315589326|gb|ADU48623.1| DNA primase [Intrasporangium calvum DSM 43043] Length = 655 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 149/676 (22%), Positives = 264/676 (39%), Gaps = 65/676 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I + I +++ ++V G CPFHDEKTPSF + G Sbjct: 4 RINPDDIATVKSRSSIEDVVREHVTLRPAG----PGSLKGLCPFHDEKTPSFTIRPAVGA 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 ++CF C GD +SF+ + +F E+V+RLA + L D +E+ ++ L+ Sbjct: 60 WHCFGCGEGGDVISFIQKVDHLTFSEAVERLAQRLSMELRYEDGGSRPREEGLGRRSRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 V +++ L + R +L R +S + F +G+AP L HLR KG Sbjct: 120 EAHRVTEEYYTERLLGDQGARLARDFLRARDFNSSHVRHFGVGFAPRGGEELVRHLRGKG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 F++++++ GL G S YDRFR RL++PIR G I FG R + + + KYLN Sbjct: 180 FTDDELVIGGLA--GRGSRGLYDRFRGRLVWPIRDITGSTIGFGARRIFDDDRIEAKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET ++ K LY A + ++VEGY DV++ AGV+ V Sbjct: 238 TSETPIYKKSTVLYGLDLAKKRIA----------QDRQAVVVEGYTDVMACHLAGVETAV 287 Query: 296 SSLGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 ++ GTA ++LL ++ +++ FDGD G +AA +A ++ Sbjct: 288 ATCGTAFGAEHIKLLRRIMRDEADLAPAKVIFTFDGDAAGQKAAMRAFADDAKWT---SQ 344 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + G+DP + G A + LI +++P+ + + + T + R + Sbjct: 345 SFVAVEKSGKDPCELRQAGGDPAVQALIEDAVPMFEFAVRTTIKRFDLGTAEGRVQASRA 404 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK------- 460 + I I+D+ LR Y++ + L ++ E + GR R + Sbjct: 405 VAPIIGSIRDRSLRPEYTREVAGVLGLEVEQVAAEVARAGRLQVDADRADGRSVNRPSAP 464 Query: 461 --------------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE-QYQEL 505 P L L E LL L+ P +L+ L Sbjct: 465 GAGSARAAGGFDDVEPGADEAAGLLPVPDRRDPVVLAERQLLQVLLQFPTLLRPGAIDLL 524 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGL 562 + + + ++ + + + E L+ +L + Sbjct: 525 SPDAFSAPAHRAVFDGIRIAGGSGERPSLGSWVSTVTEAAPTAVAPLISELAVATLPTRM 584 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILISI 620 +A Y + L R L+R+ + ++ ++ + ++ L Sbjct: 585 -----DATTGLPTARYVEELFNRVRTVELTRRVADAMSEMRRLDHAAAPDPHRSRSLAVK 639 Query: 621 LHEVHIQIHQIESQEA 636 L E+ Q+ I+ A Sbjct: 640 LQELQRQLATIKEGMA 655 >gi|22127410|ref|NP_670833.1| DNA primase [Yersinia pestis KIM 10] gi|45442722|ref|NP_994261.1| DNA primase [Yersinia pestis biovar Microtus str. 91001] gi|51597715|ref|YP_071906.1| DNA primase [Yersinia pseudotuberculosis IP 32953] gi|108809137|ref|YP_653053.1| DNA primase [Yersinia pestis Antiqua] gi|108810669|ref|YP_646436.1| DNA primase [Yersinia pestis Nepal516] gi|145597738|ref|YP_001161814.1| DNA primase [Yersinia pestis Pestoides F] gi|150260324|ref|ZP_01917052.1| DNA primase [Yersinia pestis CA88-4125] gi|153949220|ref|YP_001399547.1| DNA primase [Yersinia pseudotuberculosis IP 31758] gi|162421855|ref|YP_001604919.1| DNA primase [Yersinia pestis Angola] gi|165925043|ref|ZP_02220875.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016] gi|165937795|ref|ZP_02226356.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275] gi|166008682|ref|ZP_02229580.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211888|ref|ZP_02237923.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004] gi|167398969|ref|ZP_02304493.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419153|ref|ZP_02310906.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425189|ref|ZP_02316942.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022886|ref|YP_001719391.1| DNA primase [Yersinia pseudotuberculosis YPIII] gi|186896859|ref|YP_001873971.1| DNA primase [Yersinia pseudotuberculosis PB1/+] gi|218927837|ref|YP_002345712.1| DNA primase [Yersinia pestis CO92] gi|229837322|ref|ZP_04457485.1| DNA primase [Yersinia pestis Pestoides A] gi|229840534|ref|ZP_04460693.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842918|ref|ZP_04463069.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195] gi|229900862|ref|ZP_04515986.1| DNA primase [Yersinia pestis Nepal516] gi|270487762|ref|ZP_06204836.1| DNA primase [Yersinia pestis KIM D27] gi|21960499|gb|AAM87084.1|AE013956_9 DNA primase [Yersinia pestis KIM 10] gi|45437588|gb|AAS63138.1| DNA primase [Yersinia pestis biovar Microtus str. 91001] gi|51590997|emb|CAH22655.1| DNA primase [Yersinia pseudotuberculosis IP 32953] gi|108774317|gb|ABG16836.1| DNA primase [Yersinia pestis Nepal516] gi|108781050|gb|ABG15108.1| DNA primase [Yersinia pestis Antiqua] gi|115346448|emb|CAL19321.1| DNA primase [Yersinia pestis CO92] gi|145209434|gb|ABP38841.1| DNA primase [Yersinia pestis Pestoides F] gi|149289732|gb|EDM39809.1| DNA primase [Yersinia pestis CA88-4125] gi|152960715|gb|ABS48176.1| DNA primase [Yersinia pseudotuberculosis IP 31758] gi|162354670|gb|ABX88618.1| DNA primase [Yersinia pestis Angola] gi|165914207|gb|EDR32823.1| DNA primase [Yersinia pestis biovar Orientalis str. IP275] gi|165923243|gb|EDR40394.1| DNA primase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992021|gb|EDR44322.1| DNA primase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206634|gb|EDR51114.1| DNA primase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963147|gb|EDR59168.1| DNA primase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051473|gb|EDR62881.1| DNA primase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055952|gb|EDR65733.1| DNA primase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749420|gb|ACA66938.1| DNA primase [Yersinia pseudotuberculosis YPIII] gi|186699885|gb|ACC90514.1| DNA primase [Yersinia pseudotuberculosis PB1/+] gi|229682201|gb|EEO78293.1| DNA primase [Yersinia pestis Nepal516] gi|229689984|gb|EEO82042.1| DNA primase [Yersinia pestis biovar Orientalis str. India 195] gi|229696900|gb|EEO86947.1| DNA primase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705445|gb|EEO91455.1| DNA primase [Yersinia pestis Pestoides A] gi|270336266|gb|EFA47043.1| DNA primase [Yersinia pestis KIM D27] gi|320016797|gb|ADW00369.1| DNA primase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 582 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 175/598 (29%), Positives = 283/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK K+ YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSAFYQQSLKGQNAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + + PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDAFEQRMEAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q L + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 559 >gi|148543973|ref|YP_001271343.1| DNA primase [Lactobacillus reuteri DSM 20016] gi|184153368|ref|YP_001841709.1| DNA primase DnaG [Lactobacillus reuteri JCM 1112] gi|227364886|ref|ZP_03848932.1| DNA primase [Lactobacillus reuteri MM2-3] gi|325682489|ref|ZP_08162006.1| DNA primase [Lactobacillus reuteri MM4-1A] gi|148531007|gb|ABQ83006.1| DNA primase [Lactobacillus reuteri DSM 20016] gi|183224712|dbj|BAG25229.1| DNA primase DnaG [Lactobacillus reuteri JCM 1112] gi|227070090|gb|EEI08467.1| DNA primase [Lactobacillus reuteri MM2-3] gi|324978328|gb|EGC15278.1| DNA primase [Lactobacillus reuteri MM4-1A] Length = 621 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 160/646 (24%), Positives = 279/646 (43%), Gaps = 41/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+ I ++ + I ++IG+YV + N CPFHDEKTPSF N+ K F Sbjct: 3 KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ FL L F+++V+ +A + + +P + L Sbjct: 58 FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPSNNENRQLFD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + A +HH L + YL +RG+ IE F LGYAPD R L+ +Q+ Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236 + + ++GL + DRF R+++PI++ +GQVIAF GR + ++ KYLNS Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F+K + L+NF A +K R + L EG+MDV+S AG++N ++ Sbjct: 236 PETPIFNKRRTLFNFDVARKAARKDGR----------LYLFEGFMDVISAFAAGIENGIA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT+ TE Q+ ++ + + ++ +C+DGD PG A +AI LV H +V V L G Sbjct: 286 SMGTSFTEEQVAIIGRATKQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG F L + + + ++ + +E + I + Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469 + Y Q + Q T+ + + + ++ PS + Sbjct: 406 QAPLEEDMYLQRLASEFNLDRQTLKTQLDQLRQQLGIHNQPWTKQQPSLVRHQQFQQTSE 465 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + L E LL ++ + + D + + + Q L+ S F E Sbjct: 466 EEHRKVKLSRTELAEQILLRYMLYDREVWMHVTSD-HDFHFAHEKYQTLYLLAASYFSEN 524 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L E L Q++ D + + + + Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIAEQT 573 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L+ Q + + Q+ + + E L L ++ Q +++++E Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619 >gi|319651586|ref|ZP_08005713.1| DNA primase [Bacillus sp. 2_A_57_CT2] gi|317396653|gb|EFV77364.1| DNA primase [Bacillus sp. 2_A_57_CT2] Length = 605 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 154/633 (24%), Positives = 274/633 (43%), Gaps = 37/633 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + ++ + I ++IG Y+ +++ N Y+ CPFH E TPSF + K Sbjct: 4 RIAEEKVNEIRQAVDIVDVIGDYIQLNKQGRN-----YFGLCPFHGENTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C G+ SFL L G SF E+ +LA V L + + ++ Sbjct: 59 YHCFGCGAGGNAFSFLMELEGYSFQEAALKLAEKGNVKLEIDAASAASAKSMPVDLQQMM 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L + YL RG +IE F++GY+ S + + L ++ Sbjct: 119 EAHELLRKFYHHLLVNTKDGQHALEYLLNRGFTMESIEKFQIGYSLKSWDFVFKFLTKRK 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F + + AGL+I + +DRFR+R++FPI G IAF GR+L + KYLNSP Sbjct: 179 FPADVMERAGLIIKREKDGNYFDRFRDRIMFPIFDRSGNTIAFSGRSL-GDDEPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET++F+K K LYNF A ++K R +L EG+ DV++ +AGV N V + Sbjct: 238 ETVIFNKSKTLYNFHLARPQIKKLQRA----------VLFEGFADVIAADRAGVGNGVGT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE + L + I +C+D D+ G+ AAY+A +L + G ++ L+ G Sbjct: 288 MGTALTEEHVASLRRNVQSITICYDSDNAGIEAAYRAANL---LMEAGCQIRVALMPDGY 344 Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I +G+ F +I S+ + + +R + I+ + Sbjct: 345 DPDDYINEFGEEKFRHDVIESSITFMAFKMLYLRRGKRLQNEGDRLLYIEEVLKEISQLD 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG-YGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R +Y + + + + + Y ++N Q+ +Q+ Sbjct: 405 KAVERDHYLRQLANEFSLSLEALKEQQKQVYYTEKRRNTHKGKGAFEPQKRLQTPKRADS 464 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L E L+ ++ + I + L ++ +E Q + ++L + + P Sbjct: 465 LKPAYHTAERRLIAHMLRNSDIAFKVQDMLQGNTFNIDEHQAIITYLLGFYEKGHTPDPS 524 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + +L R V D + S E + ++ +Q L K + Sbjct: 525 AFINFIKDE-------KLKRIVVDIEMMSINDEISEQELSDYLKQVLNYQKML-----KI 572 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +E + + + + K A++ + + + Sbjct: 573 KEKLNEEKEAERQKDYAKAALIAMEILHLRKSL 605 >gi|258516190|ref|YP_003192412.1| DNA primase [Desulfotomaculum acetoxidans DSM 771] gi|257779895|gb|ACV63789.1| DNA primase [Desulfotomaculum acetoxidans DSM 771] Length = 599 Score = 366 bits (940), Expect = 6e-99, Method: Composition-based stats. Identities = 171/629 (27%), Positives = 299/629 (47%), Gaps = 38/629 (6%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P++ I+++ + I +I +YV R+ N Y CPFH EKT SF N Sbjct: 1 MRGVIPQEIIEEVRVRSDIVQVISEYVPLKRKGKN-----YIGYCPFHQEKTASFSVNRE 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDL 117 K ++CF CH GD FL SF E+V++LA + LP +DPK +++ + Sbjct: 56 KQIFHCFGCHTGGDIFRFLMLQEAISFPEAVRKLAQTLNIDLPVELDPKSLDEKRKRQAA 115 Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + ++A +F+++ L + + YL +RGI + F+LGYAP SL +L++K Sbjct: 116 WEINDLAKNFYNYVLLNHKIAQPARDYLVKRGISHDIAQSFELGYAPPRWDSLALYLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + + L + S YDRFR+RLIFPI + G+ I FGGR L + ++ KYLNS Sbjct: 176 HGIDYEKMLELGLCAVNKSGRRYDRFRHRLIFPIINETGKTIGFGGRALDETDNPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET F+KG+ LY A ++ F I++EGYMDV++ AG++N V+ Sbjct: 236 PETKYFNKGQTLYGLHLARQGIR----------EKGFAIVMEGYMDVVTAHFAGIKNAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+LT Q +LL + + ++L +D D G++A +A+D+ G V V + G Sbjct: 286 SLGTSLTLEQGKLLMRYTTDVILAYDSDQAGIKATLRALDI---LQKLGFNVRVVTVPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR-ETENRSFNTPDERAELEIHLKNCINHI 415 +DPD FIR G AFE LI ++L LV+ + E + ++ + +N++ Sbjct: 343 KDPDGFIRMAGTGAFENLIEKALDLVEYKLWQFENSVGHNLSFADKMNAVQTILPNLNYM 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R ++ L+ ++ ++ Y + +KN + R + + + G+ Sbjct: 403 YSAVEREEAAKKAASLLKISWEAIYSDFLRYKKNTEKNQQTRTNYDKNVNNKHNLINHGQ 462 Query: 476 LS-KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 E LL+ + +P+ ++ + L ++ + N E QK++ L + + + Sbjct: 463 NKMDAVEKAEQGLLILALENPSWVETIKKGLGEVFFSNKEYQKIFDLLLRESTKN-DYQA 521 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +R L L +++ L ++ I R Y++ L Sbjct: 522 SCLFSFLDDREQNILSYLLSKKIPGDNLVQIISDFIITVKRSIYKEQHEL---------- 571 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 + K++A+ + E + ++ L + Sbjct: 572 ---LLKKLAEAEKNNDRESLSQILQELQK 597 >gi|104774140|ref|YP_619120.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423221|emb|CAI98049.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 612 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 284/640 (44%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQQVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D ++ FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 ++ E+GL + + +DRFR+RL+FP+ G ++AF GR +S E KYLNSPET Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFSLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E +L + + E + ++ + + L L K + R Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|116514230|ref|YP_813136.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093545|gb|ABJ58698.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 612 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 283/640 (44%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D ++ FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 ++ E+GL + + +DRFR+RL+FP+ G ++AF GR +S E KYLNSPET Sbjct: 176 NQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHLVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNINNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQELYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYLI--VNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E +L + + E + ++ + + L L K + R Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|193215935|ref|YP_001997134.1| DNA primase [Chloroherpeton thalassium ATCC 35110] gi|193089412|gb|ACF14687.1| DNA primase [Chloroherpeton thalassium ATCC 35110] Length = 642 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 158/655 (24%), Positives = 269/655 (41%), Gaps = 40/655 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + I ++ ++ I +++ YV R +N + A PF EKTPSF + K Sbjct: 1 MRIPEEKIDEIRRNLDIVDVVSDYVQLRRAGSN-----FKALSPFTSEKTPSFIVSPEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDL 117 Y CFS G+ +F+ + FI++V+ LA AGV L P + Sbjct: 56 IYKCFSTGKGGNVFTFVMEMEKIGFIDAVKMLAPRAGVSLAEFERHSPDAAAPSDPNEEY 115 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + FFH ++ K + Y ERGI I F LGYA D L ++ G Sbjct: 116 YNTLTWSAKFFHSAMNLPEGKTCYDYFRERGILPETISAFGLGYAFDDWDKLHHAAQKDG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNS 236 S E + E GL+ + YD FR R +FPI S G+V+ FGGR L+ + ++ KY+NS Sbjct: 176 ISSEILSELGLIKYTEKGQKYYDAFRARAMFPIFSPGGKVVGFGGRILTGQKDAPKYINS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++ K K L+ A + +++ ILVEGYMDV+SL Q G++N V+ Sbjct: 236 PESKIYEKSKILFAMNFAKDEIRR----------REEAILVEGYMDVISLHQVGIKNAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q RLL + + I+ +DGD G++A + ID+ + G + + L G Sbjct: 286 SSGTSLTTEQARLLKRYTKNILFIYDGDAAGIKAMMRGIDV---LIEEGLHASVLTLPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDSF+R GK F I +D + + F +P+ E L ++ + Sbjct: 343 NDPDSFVREEGKDTFLSFIKAHRSSFLDFKLQVLENDGGFESPEATTESIRALLESLSKL 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----PSQRLMQSSL 471 D+ Y + + +L E +K +R + Sbjct: 403 PDELALEMYLKELSQKLDVGLSTVQKELGKIQNRRRKPSRQPMPSSYPVEAFPEPLPLPE 462 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFV 527 + S+ E L + + + + ++ + + F+ + + Sbjct: 463 QAPPDEEIVSVAERTFLKAFLESTYHGFTVLEFVDSHKEIFNFRHDWTRLIVDFMLARYE 522 Query: 528 EQ------KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + F L + + L + W T++ + R+ Sbjct: 523 HAKAADSLQNFDLPNELNYLDDEAARNFISSLLVDESVSEKWP--TDSPSMYARRCLSAF 580 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 L + +LSR E+ + ++ + K ++ L+ + + Q + A Sbjct: 581 LDATGKL-ILSRYTEQRHAAMQEMEQTADPAKQEEILHRLNSLRKEELQAKKNFA 634 >gi|300812199|ref|ZP_07092641.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496835|gb|EFK31915.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 612 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 282/640 (44%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D + FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLRHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 +++ E+GL + + +DRFR+RL+FP+ G +AF GR +S E KYLNSPET Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--TVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E +L + + E + ++ + + L L K + R Sbjct: 521 FIPE--------ELQSIIVSTDMTGLPGEITLEEL-EAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|227510292|ref|ZP_03940341.1| DNA primase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189944|gb|EEI70011.1| DNA primase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 605 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 153/639 (23%), Positives = 282/639 (44%), Gaps = 41/639 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P D I+ + + I +++ QYV + N + CPFH+E+TPSF ++ K Sbjct: 1 MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116 ++CFSC G+ F+ + SF E+V+++A + + + ++ Q Sbjct: 56 IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 LI L E A +HH L K YL RG++ I++++LGYAP R L+ + Sbjct: 116 LIELHEQAVKLYHHILINTKMGKSALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234 + + + ++GL + + DRF +R+++PIR++ GQ +AF GR L+K + KYL Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNATGQTVAFSGRLLAKDSDMPKYL 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF+K K L+N A ++ S +L EG+MDV+S Q G+++ Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++S+GT+LTE Q+ + +++ +++C+DGD PG +A +AID + V + Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD FIR G F+ L+ + VD + + T + +A I+ Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQHAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I R Y + D Q + R + Q Sbjct: 403 ISSGISRDLYLNRLADSFSIDKQVLKQQLQPLIRKTVTKRANHQIPA-----GQPVNQSP 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + K ++ + LL ++++ + + ++ + + + Q L+ F + + Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E LL +D + + E + +++ L + + + Sbjct: 517 ATFSNLITEDSLQSLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ + ++ Q + G+ +K L+ L ++ Q E Sbjct: 566 IKKKQAELRQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604 >gi|271499151|ref|YP_003332176.1| DNA primase [Dickeya dadantii Ech586] gi|270342706|gb|ACZ75471.1| DNA primase [Dickeya dadantii Ech586] Length = 584 Score = 366 bits (939), Expect = 6e-99, Method: Composition-based stats. Identities = 174/629 (27%), Positives = 284/629 (45%), Gaps = 52/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLDVPYEAGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ H+L YL RG+ I F +G + + + Sbjct: 119 LMEQLSAFYQHTLNQPAGTPAREYLARRGLSDDIIRQFAIGCTLPGWDNALKRFGRNSDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + +AG+L+ + + +YDRFR+R++FPIR RG+VIAFGGR + + KYLNSPET Sbjct: 179 KTTLTDAGMLV-TNENGRTYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQKNPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ I +++PL L+ + +TPD RA+L I+ + + Sbjct: 347 DTLVRQEGKAAFEQRIEQAMPLSSFLFDSLLQQVDMSTPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + K + Sbjct: 407 LRLYLRQQLGHKLGLLDDSQLDRLLPKTAEQTLSYQPPRLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L + +L+ L E + Sbjct: 452 -----RILIGLLVQNPRLSAEVPTLALDGVEESKVAGLELFLDLVKACNESPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ E + + L+ L E V + + Y Q L ++ + + Sbjct: 507 EKYRESKYRKQLETLASWDHMIED-DELEEKFRVSLAELYDQL---------LQQRMDTL 556 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + T + L S+ + + Sbjct: 557 IAR--ERTHGLSMNERKELWSLQLALTRK 583 >gi|227513299|ref|ZP_03943348.1| DNA primase [Lactobacillus buchneri ATCC 11577] gi|227083500|gb|EEI18812.1| DNA primase [Lactobacillus buchneri ATCC 11577] Length = 605 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 152/639 (23%), Positives = 281/639 (43%), Gaps = 41/639 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P D I+ + + I +++ QYV + N + CPFH+E+TPSF ++ K Sbjct: 1 MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116 ++CFSC G+ F+ + SF E+V+++A + + + ++ Q Sbjct: 56 IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 LI L E A +HH L + YL RG++ I++++LGYAP R L+ + Sbjct: 116 LIELHEQAVKLYHHILINTKMGESALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234 + + + ++GL + + DRF +R+++PIR+ GQ +AF GR L+K + KYL Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNGTGQTVAFSGRLLAKDSDMPKYL 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF+K K L+N A ++ S +L EG+MDV+S Q G+++ Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++S+GT+LTE Q+ + +++ +++C+DGD PG +A +AID + V + Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD FIR G F+ L+ + VD + + T + +A I+ Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQHAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I R Y + D Q + R + Q Sbjct: 403 ISSGISRDLYLNRLADSFSIDKQVLKQQLQPLIRKNVTKRANHQIPA-----AQPVNQSP 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + K ++ + LL ++++ + + ++ + + + Q L+ F + + Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E LL +D + + E + +++ L + + + Sbjct: 517 ATFSNLITEDSLQTLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ + ++ Q + G+ +K L+ L ++ Q E Sbjct: 566 IKKKQAELKQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604 >gi|308050978|ref|YP_003914544.1| DNA primase [Ferrimonas balearica DSM 9799] gi|307633168|gb|ADN77470.1| DNA primase [Ferrimonas balearica DSM 9799] Length = 595 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 168/640 (26%), Positives = 287/640 (44%), Gaps = 70/640 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI LL + I LI V + N Y ACCPFH+EKTPSF + K F Sbjct: 4 RIPRDFIDQLLSRLDIVELIDGRVKLKKAGKN-----YHACCPFHNEKTPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--------- 112 Y+CF C G+ + F+ F+++++ LA G+ +P + + Sbjct: 59 YHCFGCGAHGNAIDFVMEYDRLEFVDAIEELAGQLGIEVPRESSGTGRTGRGPSGGTSKP 118 Query: 113 ----IQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 D L+ A ++ L+ + +R+ YL +RG+D ++ F +G+AP Sbjct: 119 TPSVKLDDHFALMNWAARYYQQQLRQHPERERVIEYLKQRGLDGETVQRFGIGFAPPGWD 178 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 SL R +++ + E G+LI+ YDRFR+RL+FPI+ RG+VIAFGGR L Sbjct: 179 SLLSQQRSNNQAQKLLAECGMLIEK-EGGKRYDRFRDRLMFPIQDRRGRVIAFGGRVL-G 236 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 ++ KYLNSPET +FHKG+ LY + + R +++VEGYMDV++L Sbjct: 237 DDTPKYLNSPETPIFHKGRELYGLYPLRQASRNPER----------VLVVEGYMDVVALA 286 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G+ V+SLGT+ T +++L S +V C+DGD G AA++A++ L L G Sbjct: 287 QHGIDYAVASLGTSTTADHIQVLMRTASKEVVCCYDGDRAGREAAWRALETALPMLKSGK 346 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L GEDPD+ +R GK AFE I +++PL D L+ +++ + ++ + +A Sbjct: 347 ALKFMFLPDGEDPDTLVRQEGKEAFEARIEKAMPLSDYLFSHLSQDANMSSDEGKASFIN 406 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++ I+ I D+ LR Q + L +++ + +K + R Sbjct: 407 TIRPLIDQIGDEVLRETLIQRLEKTLGWGARQHFQAPRAVAKPQQKAQQGRGTPI----- 461 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + L+ +P + + ++A + + L L + Sbjct: 462 ------------------RRAIALLLQNPRLGYQLDPQVAVLHLPLGGIALLKGMLEACR 503 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ +R + L++L + + + + L + Sbjct: 504 PA--PLTTAQLLERYRDSDDYGTLRKLLSWNMEVE----------EHLDKEFFDCLQ-WL 550 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 R L E ++++ + E+T L +L + Sbjct: 551 NQRFLEHLSETLQQKARDGSIT--VEETRKLSDVLTILKR 588 >gi|238750948|ref|ZP_04612445.1| DNA primase [Yersinia rohdei ATCC 43380] gi|238710862|gb|EEQ03083.1| DNA primase [Yersinia rohdei ATCC 43380] Length = 582 Score = 366 bits (939), Expect = 7e-99, Method: Composition-based stats. Identities = 174/598 (29%), Positives = 284/598 (47%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRIFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK+ + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMENLSGFYQQSLKSQTANQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK FEK + E+ PL L++ ++PD RA+L I+ + + Sbjct: 347 DTLVRKEGKDRFEKRMEEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAESINSYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R + Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 559 >gi|291618942|ref|YP_003521684.1| DnaG [Pantoea ananatis LMG 20103] gi|291153972|gb|ADD78556.1| DnaG [Pantoea ananatis LMG 20103] Length = 581 Score = 366 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 181/627 (28%), Positives = 289/627 (46%), Gaps = 58/627 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA G+ +P + + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATSHGLDVPYEAGNGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ SL+ + + YL+ RG+ + I F +GYAP ++ + ++ Sbjct: 119 LMENLNGFYQQSLQQSSAQSARDYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAG+L+ D YDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEAGVLVSNDKG-RVYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL + R +++VEGYMDV++L Q GV V+SLG Sbjct: 237 PVFHKGRQLYGLYEALKNHPEPKR----------LLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ ++ D +A L I I + Sbjct: 347 DTLVRQEGKAAFETRMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y QA+ ++L L + + + P +R Sbjct: 407 LRIYMRQALGNKLGILDDSQLEKL----MPKQAPGGSAPVAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ LI +P + LA+ + L+ L + E ++ Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLAESKIAGLP---LFIELVTRCNENPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + F + L+ L V + + +EA D + L + Sbjct: 504 LELYRGTNFSQTLETLA--VWNHMIVDEESEAVFQDSLASVYDS--------ALEER--- 550 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHE 623 +E IA+ G ++ L ++ Sbjct: 551 LEFLIARERTHGLSTDERRELWALSQA 577 >gi|242373867|ref|ZP_04819441.1| DNA primase [Staphylococcus epidermidis M23864:W1] gi|242348421|gb|EES40023.1| DNA primase [Staphylococcus epidermidis M23864:W1] Length = 598 Score = 366 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 155/625 (24%), Positives = 271/625 (43%), Gaps = 39/625 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117 +CF C G+ F + F+E+V+ L + + + + + ++ + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDIPFVEAVKELGERVNIQVDIGNTQQNQESQMASDDLKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +++H++L K + YL ERG I+ ++G+APD+ + + L +K Sbjct: 116 IEMHELIQEYYHYALMKTVEGEEALNYLRERGFTDELIKEREIGFAPDNSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A ++K + IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRLLYNLDKARKSIRK----------NDEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ I L FDGD G A K L G V V L G Sbjct: 285 SMGTQLSQEHVTFLKKLTHNITLMFDGDFAGKEATLKTGQ---TLLQQGLNVYVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG F + + + + ++ N N I+ ++ Sbjct: 342 MDPDEYIGKYGNDTFLNFVQKDKKSFVLFKVQTHQDEINNNDLAYERYFKETTNDISLVQ 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR + D + + E A + SQ Q Sbjct: 402 STILRNKLIHDVADIFKINPETIQHEVGVNATPQAPPADYGTYGPSSQAHTQLF----NR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E ALL + YQ+++ + N + +++ L F EQ Y+ + Sbjct: 458 LSKHEKAERALLKHFMKDKDTFLNYYQKISSDDFTNKYFKSIFNILHDYFSEQDYYSISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E +L++ + + + Y + E Sbjct: 518 VMQYIESNDLREAFIELEQY--------NLNDEPYENEIEDYIHIINSN----SGEESIE 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621 + ++ + + G+ E + ++ Sbjct: 566 ALNHKLREASRIGDVELQKYYLQLI 590 >gi|261820104|ref|YP_003258210.1| DNA primase [Pectobacterium wasabiae WPP163] gi|261604117|gb|ACX86603.1| DNA primase [Pectobacterium wasabiae WPP163] Length = 584 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 169/608 (27%), Positives = 280/608 (46%), Gaps = 49/608 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL +RG+ + I F +G+AP ++ + + Sbjct: 119 LMGQLSGFYQQALTQSVGTPALQYLQQRGLSADVISHFAIGFAPPGWDNVLKRFGRNNDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHTELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK FE+ + +LPL L++ + ++PD R +L + I + + Sbjct: 347 DTLVRKEGKAVFEQRMEHALPLSQFLFETLQQQVDMSSPDGRTKLSTLVLPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + ++ + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVAEQAQSYQPPQLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L I D L+ L + Sbjct: 452 -----RILVGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLL 591 ++ + + + L+ + + E + + + Y Q L R L Sbjct: 507 EKYRDSKYRKQLETMASW-NHMIVEEELDEKFRISLAELYDQLLKQRQETLIARDRTHGL 565 Query: 592 S-RQKEEI 598 + ++K+E+ Sbjct: 566 NAKEKKEL 573 >gi|288941559|ref|YP_003443799.1| DNA primase [Allochromatium vinosum DSM 180] gi|288896931|gb|ADC62767.1| DNA primase [Allochromatium vinosum DSM 180] Length = 582 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 170/594 (28%), Positives = 261/594 (43%), Gaps = 42/594 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI LL I LIG + + ++ A CPFHDEKTPSF + K F Sbjct: 4 RLPPEFIDQLLARTDIVELIGSRLQLRKAGR-----EFQARCPFHDEKTPSFSVSPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G+ + FL F E+V+ LA AG+ +P D + L RL+ Sbjct: 59 YHCFGCGAHGNAIGFLMEYDHLPFREAVEELAERAGLEIP-NDGTPMQAAPDHGPLYRLM 117 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A ++ L+ + +R YL ERG+ F LGYAP + + + Sbjct: 118 EDAALYYRRQLREHPEAQRAVAYLKERGLTGEIAAHFGLGYAPARGNPVLAQFGRDTATR 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ GL+ + D YD+FR+R++FPIR RG+VI FGGR L KYLNSPET Sbjct: 178 TRLQTVGLVSEQDGW--PYDKFRDRVLFPIRDRRGRVIGFGGRVL-GDGKPKYLNSPETP 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+ LY A + + +I+VEGY+DV++L Q+G+ N V++LGT Sbjct: 235 IFHKGRELYGLHEAQQANR----------TFDALIVVEGYLDVIALAQSGITNAVATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L L KL+P IV CFDGD G AA+KA++ L + F+ LS G+DPD Sbjct: 285 ATTPEHLNQLLKLAPDIVFCFDGDRAGRAAAWKALETALPLATGHQAIRFLFLSEGDDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G F + ++ PL D L++ + + T D RA L+ I+ + Sbjct: 345 TLVRREGAEGFRSGLKQAQPLSDFLFEHLSASMDTTTMDGRARFASQLQPYIDRLPAGFY 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + D Q AR R + + SLV Sbjct: 405 RDLLIRRLADFTGAPAQALRPAV----------ARRRQPAARLAQPTRPSLV-------- 446 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 A ++ L++ P + + D R + L + + +R Sbjct: 447 ----AQVIALLLDRPDLAPQALALNDDWRRSTQRGIDVLIQLLDILRQSPDLSKARLLER 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E L++L + A + + + ++ +LL+++ Sbjct: 503 WREHPHFGYLQRLSVDPFLRDMTPEGAGAELTGAIRRLSDEVREHEWRQLLNKR 556 >gi|154509388|ref|ZP_02045030.1| hypothetical protein ACTODO_01919 [Actinomyces odontolyticus ATCC 17982] gi|153799022|gb|EDN81442.1| hypothetical protein ACTODO_01919 [Actinomyces odontolyticus ATCC 17982] Length = 656 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 149/670 (22%), Positives = 255/670 (38%), Gaps = 67/670 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + + I +IG++V G CPFHDE+TPSF+ G + Sbjct: 5 IRKDDIEAVRNAVKIDEIIGEHVALRPAG----IGSLKGLCPFHDERTPSFNVRPHLGMF 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + F E+V+ LAA AG+ L + + + + L+ Sbjct: 61 HCFGCGESGDVISFVQKIDHLPFTEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA +F+ L + + +L ERG F +GYAP S SL HLR KGF+ Sbjct: 121 AHRVAEEFYQQQLASPEAHKGRTFLAERGFTQVMCAHFGVGYAPASWDSLTRHLRSKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237 +++I +GL S YDRFR RL++PIR G + FG R L + KYLN+P Sbjct: 181 DQEIQISGLGSQ--GSRGVYDRFRGRLVWPIRDITGATVGFGARRLDDSDKESPKYLNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + + +++VEGY DV++ AGV N V++ Sbjct: 239 ETPIYKKSQLLYGLDLAKKTIA----------TEHKVVIVEGYTDVMAAHVAGVTNAVAT 288 Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338 GTA ++++ + ++ FDGD G +AA +A Sbjct: 289 CGTAFGSEHVKIIRRLLGDHADPAAGVLLSTGRAHGSEVIFTFDGDSAGQKAALRAYGED 348 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G+DP G A L+ +PL + + + Sbjct: 349 QNFAA---QTFVAVAPGGQDPCDLRLSQGDQAIVDLVNSRIPLFEFAIRSVLSQMDLRSA 405 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456 + R + + HIKD+ LR Y++ + L GR AR Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRQLAGWLGMDIPTVEQAIRAAGRVEVLSHEARP 465 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515 + + + + S E L ++ HP + ++EL + Sbjct: 466 GEIEMAGAGRPVPASERRGPEDPVSRIERQALEAVLQHPLYAVGSGFEELDGQSFTVPTH 525 Query: 516 QKLWSFL----------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + + F + + + E + Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATLAASRRFVQ--VVLETAGEFIGPAVT 583 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + A DVR + +A R L+R+ E ++++ + + + Sbjct: 584 QLAVAPLPVAGEADVRSYCRGVVAAMVRM-DLTRKLGEARAALSRL--SEDDPIYSEMFR 640 Query: 620 ILHEVHIQIH 629 L + + Sbjct: 641 ELMRLEQRRQ 650 >gi|238916619|ref|YP_002930136.1| DNA primase [Eubacterium eligens ATCC 27750] gi|238871979|gb|ACR71689.1| DNA primase [Eubacterium eligens ATCC 27750] Length = 587 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 146/608 (24%), Positives = 254/608 (41%), Gaps = 33/608 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y R+ I +++ I ++I YV + + Y CPFH+EK+PSF + + Y Sbjct: 2 YSREVIDEVISRNDIVDVISGYVKLKKNGS-----SYTGLCPFHNEKSPSFSVSGQRQLY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ ++F+ +F+E+V+ L AGV LP + K+ I+ L+ + Sbjct: 57 HCFGCGAGGNVITFVMEYENMTFLEAVKMLGERAGVALPQTSMSEEDRKERGIRDRLLEI 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A +++ L++ K YL +R + I F LGYA S +L + L+ KG+ + Sbjct: 117 NKIAATYYYRQLRSENGKAGLDYLKKRELSDSTINSFGLGYATQSTGNLYKLLKDKGYDD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + E+GL +++F NR+IFPI +VI FGGR + KYLNSPET Sbjct: 177 DILKESGLFT---YERGIHEKFWNRVIFPIMDINNKVIGFGGRVM-GDAKPKYLNSPETR 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K +NLY A + +I+ EGYMDV+S+ QAG V+SLGT Sbjct: 233 LFDKSRNLYGLNIAR------------TSRKPNMIICEGYMDVISMHQAGFNQAVASLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT RLL + + +++ +D D+ G++AA +AI + G + + +DPD Sbjct: 281 ALTPGHARLLKRYTDNVLITYDSDEAGVKAALRAIPI---LKEAGLSTKVINMRPYKDPD 337 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G AF++ I + N P+ E + + K++ Sbjct: 338 EFIKAMGAEAFQERIDNAENSFMYEIGTMLRNYDRGDPESETAFEREVAAKLVTFKEKLE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y +A+ + + + ++ R+ + + K K Sbjct: 398 RDNYLKAVCRQF--MIPEDGMRQMVSRLGNQEGIISRNAGAGTPQPTVERKPKKKREDGL 455 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E LL LI+ I + + + + + ++ + I Sbjct: 456 RQAEKMLLTWLISDRDIFDKVAGYIKPEDFIDPLFSGVAEKVYEQYGTGNISPAAIIADY 515 Query: 541 LCERGFGELL----KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 E+ LD + + + I L + + Sbjct: 516 ATTEEHTEVAAMFSADLDESLNNLEREKTLNDIVIRIKANSLNHELNKTVDPKRMQEIII 575 Query: 597 EIEKQIAQ 604 E ++++ Q Sbjct: 576 E-QQKLNQ 582 >gi|327395292|dbj|BAK12714.1| DNA primase DnaG [Pantoea ananatis AJ13355] Length = 581 Score = 366 bits (938), Expect = 9e-99, Method: Composition-based stats. Identities = 181/627 (28%), Positives = 289/627 (46%), Gaps = 58/627 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVELIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA G+ +P + + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATSHGLDVPYEAGNGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ SL+ + + YL+ RG+ + I F +GYAP ++ + ++ Sbjct: 119 LMENLNGFYQQSLQQSSAQSARDYLEHRGLSADIINHFSIGYAPAGWDNVLKRFGKQPED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++EAG+L+ D YDRFR R++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 RESLMEAGMLVSNDKG-RVYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL + R +++VEGYMDV++L Q GV V+SLG Sbjct: 237 PVFHKGRQLYGLYEALKNHPEPKR----------LLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDNVICCYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + +++PL L+ ++ D +A L I I + Sbjct: 347 DTLVRQEGKAAFETRMEQAMPLSSFLFDSLLPQVDLSSRDGKARLSTLALPLITQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y QA+ ++L L + + + P +R Sbjct: 407 LRIYMRQALGNKLGILDDSQLEKL----MPKQAPGGSAPVAPPLKRTTM----------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ LI +P + LA+ + L+ L + E ++ Sbjct: 452 -----RVLVALLIQNPQLATLVPSLDGLAESKIAGLP---LFIELVTRCNENPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + F + L+ L V + + +EA D + L + Sbjct: 504 LELYRGTNFSQTLETLA--VWNHMIVDEESEAVFQDSLASVYDS--------ALEER--- 550 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHE 623 +E IA+ G ++ L ++ Sbjct: 551 LEFLIARERTHGLSTDERRELWALSQA 577 >gi|255323755|ref|ZP_05364883.1| DNA primase [Corynebacterium tuberculostearicum SK141] gi|255299245|gb|EET78534.1| DNA primase [Corynebacterium tuberculostearicum SK141] Length = 640 Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 136/653 (20%), Positives = 256/653 (39%), Gaps = 52/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + P+ ++G+YV PF DEKTPSFH +G+ Sbjct: 5 RIPDSDIQAIRERAPLEEIVGEYVQLKPAG----HDSLKGLSPFKDEKTPSFHVRPQRGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLI 118 Y+CFS GD SFL + SF E+V+ +A G + + + + LI Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEAVAQKIGYHINYQGGSTGARNEKPGTRQRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F+ L+ + +L +RG I F+ GYAP+ + +HL + GF Sbjct: 121 AANKAAHEFYRQQLETPQAATARDFLLDRGFSREIIYDFECGYAPEGWDTATKHLLRLGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E++ AG I DRF RL++PI+ G VI FG R L + KY+N+ Sbjct: 181 SFEELEAAG--ISKMGKRGPIDRFHRRLLWPIKDLSGNVIGFGARKLFDDDKLGKYMNTT 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + ++VEGY DV+++ AGV+ V+S Sbjct: 239 ETMLYRKSKVLFGLDLAKRNIA----------EQHQAVVVEGYTDVMAMYAAGVKTAVAS 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L++L + ++ FDGD+ G +AA +A D + Sbjct: 289 CGTAFGGEHLQVLRRLMLDDSYFNGELIYTFDGDEAGQKAAMRAFD---GEQKFTGQSFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A +LI + +P+ + + + S ++ + R + Sbjct: 346 AVAPDGMDPCDLRLQKGDAAVRELIADRIPMFEFVIQSVIAEYSIDSAEGRLQALRRAVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+DQ L+ Y++ + + + + K A + Q + Sbjct: 406 VVAQIRDQPLQREYARRLAGWVGWPDPEEVLRQVRAEARKPKKAEKPTIRRFDNAKQQPA 465 Query: 471 LVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + PS +E L + P + + + Y N+ + + + + Sbjct: 466 QQDVPMIHPPSPKETHLWPQREALKLALQMPQVAGSYFDGITADAYTNDAYRLVREAIST 525 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR------QGY 578 + + E + + +++D + +E + + + Y Sbjct: 526 VGGAAQGATMPAV----------EWIAAVAGEMQDLTGRNFVSELAVEAILPTDVGPEKY 575 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + ++ Q +++ ++ ++ + L + L + ++ Sbjct: 576 ADSVLSRLQETVVGDQIAQLKARLGRMRPSDDEASYNSLFADLVALEQARREL 628 >gi|238760056|ref|ZP_04621207.1| DNA primase [Yersinia aldovae ATCC 35236] gi|238701743|gb|EEP94309.1| DNA primase [Yersinia aldovae ATCC 35236] Length = 582 Score = 366 bits (938), Expect = 1e-98, Method: Composition-based stats. Identities = 173/598 (28%), Positives = 281/598 (46%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SLK + YL RG+ I+ F +G+AP + + + G S Sbjct: 119 LMESLSGFYQQSLKGQTANQAREYLKHRGLSEEIIQHFAIGFAPSGWDNALKRFGRDGES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ +++ YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RTALNDAGMLV-TNDTGRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A V + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + + PL L++ ++PD RA+L I + + Sbjct: 347 DTLVRKEGKDAFEQRMEGAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLITQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGLLDDSQLDKLMPKQAENANTYQPPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q + + L+ L + Q ++ Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + F + L+ L + + E VD ++ ++ L++R++ Sbjct: 504 LELYRDNKFSQQLETLATW--NHMIVEDRVEQTFVDTLTSLYDSILEQRQETLIARER 559 >gi|213854871|ref|ZP_03383111.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 504 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 158/541 (29%), Positives = 259/541 (47%), Gaps = 44/541 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 3 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 58 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 118 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 178 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 236 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T + +L++ + ++ C+DGD G AA++A++ + ++ G +V F+ L GEDP Sbjct: 286 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQVRFMFLPDGEDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE + ++ PL L+ ++PD +L IN + Sbjct: 346 DTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLAALALPLINQVPGDT 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + +L + P+ +L ++++ Sbjct: 406 HRIQLRQTLGLKLGIFDDSQLDRLV-------PKQAESGVSRPAPQLKRTTM-------- 450 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + L + L L+ L + Q ++ Sbjct: 451 -----RILIGLLVQNPDLAPLVPPLDALDQNKL--PGLG-LFKELVKTCLAQPGLTTGQL 502 Query: 538 H 538 Sbjct: 503 L 503 >gi|303229448|ref|ZP_07316238.1| DNA primase [Veillonella atypica ACS-134-V-Col7a] gi|302515984|gb|EFL57936.1| DNA primase [Veillonella atypica ACS-134-V-Col7a] Length = 585 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 298/631 (47%), Gaps = 56/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V ++ N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVVSEHVTLKKKGKN-----YWGCCPFHNEKTPSFSVAPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L G +F+E+++RLA A +PLP P++ +E+ + L Sbjct: 60 YCFGCHASGNAIKFLMELEGITFVEALERLANRANIPLPEAKLSPQVRAREERRKKLYEA 119 Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+A +FFH+ LK + K YL +RG+ IE F+LG+AP+ L + R++G Sbjct: 120 CELAANFFHNCLLKTSYGKAGLEYLKKRGLTDETIEKFRLGFAPEGWDRLYKAFRERGIE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++E L I ++ +YD FRNR++FPI +G+V+ FGGR + + KYLNSPE Sbjct: 180 ESILLELNL-IRKNDKGQAYDFFRNRVMFPIMDGKGRVVGFGGRVM-DDSTPKYLNSPEC 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 QIFEKGKILFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNKGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ +L + + I+L +D D G +A +AI+L +V + + G+DP Sbjct: 288 TAYTKDHGHILMRQADEIILAYDMDGAGRQAVTRAIEL---LQNTDFKVRVLAMPDGKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGKAFKELVEKAVKPLDYLLSESLIKHDTNDAEGKQAVMQDIFPYIANIHSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R D L+ L ++S RY++ + + + +++ Q + Sbjct: 405 IRD-------DALKALALPLWLDNSTIFRYFRNYTQKGNIELVDEKITQPKKIVSGD--- 454 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L+ +I LQE Q L + N + + + +++ F + + PE + Sbjct: 455 ----EELLMAHVITDSKALQEVVQYLPLEDFQNIQYRGIIEKIYTLFTQIGQYQPESVED 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + E+ +L + + L R L Q + Sbjct: 511 VLTPQEY-EIFSRLMIIETNEAVP-----------------VLIRKIRLHSLREQYKMHS 552 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 553 ILADQLKRAGDSTFISEL-HKCQEIQNLIRE 582 >gi|331090834|ref|ZP_08339680.1| hypothetical protein HMPREF9477_00323 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399693|gb|EGG79355.1| hypothetical protein HMPREF9477_00323 [Lachnospiraceae bacterium 2_1_46FAA] Length = 591 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 150/615 (24%), Positives = 265/615 (43%), Gaps = 45/615 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++++ + I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSEELVEEVRMRNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSREKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AG+ LP + ++K ++ ++ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKFLAERAGIDLPEVEYSKEAKEKADLKLTIL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK K + YL RG+ I F LGYA L +L+ KG+ Sbjct: 116 EINKLAAKYFYAQLKAEGGKTAYAYLKNRGLSEETIVAFGLGYANKYSDDLYRYLKMKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGL I D +YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 GDELLLKAGL-ISADERKGAYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K +NLY A + + ++ EGYMDV++L QAG N V+SL Sbjct: 234 TIVFDKSRNLYGLNRAR------------TSRKPYFLICEGYMDVIALHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT LL + + L +D D+ G RAA +AI + G + + +D Sbjct: 282 GTALTVGHASLLKRYVNEVYLTYDSDEAGTRAALRAIPI---LKDAGITAKVIRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + + N+P+ + E + + + +++ Sbjct: 339 PDEFIKNLGAEAFEERISKARNGFMFGLEMLEKEFDMNSPEGKTEFHHEVARRLCNFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + K A P+ + Q+ Sbjct: 399 IERENYIEAVAQAYHIGYDNLRKLVT-------KMAVQSGLATPAVKPKQAVGKDKIRED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL L+ I + + ++ + + L+ + E P +I Sbjct: 452 GNLQSQKILLTWLLEDEKIFGQIKKYISPKDFTEKLYTTVADILYEQY-EDGEVNPAKIM 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585 + + L E + + + + Sbjct: 511 NHFTDEEEHREVASLFHTKIKELTTKQEQEKALKETIIRVKNNSIEYATKMLDPTDIVGL 570 Query: 586 KRFRLLSRQKEEIEK 600 ++ R+ +++++ Sbjct: 571 QKLMDAKRELQDLQR 585 >gi|253702378|ref|YP_003023567.1| DNA primase [Geobacter sp. M21] gi|251777228|gb|ACT19809.1| DNA primase [Geobacter sp. M21] Length = 582 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 142/632 (22%), Positives = 273/632 (43%), Gaps = 55/632 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + ++++ PI +I Y+ + N Y CPFH EKTPSF+ N ++G + Sbjct: 2 IPDEKVREVRERAPILQVISDYMSLRKSGAN-----YQGICPFHGEKTPSFNVNPARGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ F+ + G SF ++V+ LA GV +P ++K Q + Sbjct: 57 HCFGCGAGGNSFDFVMRMEGLSFPQAVKFLAKKVGVEIPERPLSRDEKRKMDEQEQAFHI 116 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A +++ L++ YL +RG+D +++G+AP +L + ++KG Sbjct: 117 NDLACEYYRRVLESDEAGSAGRGYLQQRGVDQETAATYRMGFAPAGWDNLAKFFQRKGVP 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ + GLL + YD FRNRL+F I G+ I FGGR + KY+NSPE+ Sbjct: 177 LDQAEKLGLLRKREGRDGYYDTFRNRLLFTISDLHGRAIGFGGRVM-DDSLPKYINSPES 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +++HK + L+ A ++ I+VEGY D L+L +AG NVV++ G Sbjct: 236 VVYHKSEVLFGVDLAKKGMR----------EQGSAIVVEGYFDHLALYRAGYTNVVATCG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT ++LL + + R + FDGD+ G +A ++++L L G V + G+DP Sbjct: 286 TALTPPHVKLLRRYAERAYMLFDGDEAGRKATVRSMEL---FLEEGFPARVVEVPSGDDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+FIR G AF L+ +SLP+ + ++ + + + + + I D Sbjct: 343 DTFIRREGGAAFAPLLEQSLPIFQSFYLGVLKSLDIRSVEGKVAFVNEVSPRLAKISDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + I + + + ++ + + Sbjct: 403 ERGLYEKEICRTVGIDQSMLQRKVGIPATPRPQQSKAAPPRTAAT--------------- 447 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E LL + +P ++ AD + N L + ++ + + Sbjct: 448 ----EEVLLTLMAKYPEVVLRVRDHGADKLF-NGAHLGLAEAMIAEAGRG-DLDLSRVLE 501 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 ++ + + R L+ ++ + ++Q +R L +++ Sbjct: 502 QIESP---------EERSRLFSLFVEDAHLEDMNAVKAFEQCCQALER-HALKGGGKDLA 551 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +++A V ++ + +++ L + + ++ Sbjct: 552 RELATVDP--DSPRYLEILAELERLRNKKSKL 581 >gi|311069122|ref|YP_003974045.1| DNA primase [Bacillus atrophaeus 1942] gi|310869639|gb|ADP33114.1| DNA primase [Bacillus atrophaeus 1942] Length = 603 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 155/633 (24%), Positives = 284/633 (44%), Gaps = 38/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I +IG YV ++ N Y+ CPFH E TPSF + K Sbjct: 4 RIPDEIVDQVQKSADIVEVIGDYVQLKKQGRN-----YFGLCPFHGENTPSFSVSPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C G+ SFL + G SF ESV LA + P + + + Sbjct: 59 FHCFGCGAGGNVFSFLRQMEGYSFTESVSHLADKYQIDFPDDITINTASRPDSSGEQKMA 118 Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ F+HH L N + + YL RG I+ F++GYA DS + + L ++G Sbjct: 119 EAHELLKKFYHHLLMNTKEGQDALDYLLSRGFTKELIDEFEIGYALDSWDFMTKFLAKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F EE + +AGLLI ++ + +DRFRNR+IFPI G V AF GR L + KY+NSP Sbjct: 179 FKEELMEKAGLLIRREDGSGYFDRFRNRIIFPIHDHHGAVAAFSGRAL-GDQQPKYMNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHK K LYNF A ++K R +L EG+ DV+S +GV+ +++ Sbjct: 238 ETPLFHKSKLLYNFHKARLQIRKQERA----------VLFEGFADVISAVSSGVKESIAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE ++L + I+LC+D D G A KA+DL + +V ++ G Sbjct: 288 MGTSLTEEHAKILRRNVEEIILCYDSDSAGYEATLKAVDL---LMKKDCKVRVAIIPDGL 344 Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +++ YG F+ I+ + + ++ + + ++ + +R + I+ + Sbjct: 345 DPDDYVKRYGGEKFKNDIINASVTVMAFKMQFFRKGKNLSDEGDRLAYIKSVLKEISALS 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + + + + + + +R+ + + + K +L Sbjct: 405 GSLEQEVYLKQLAAEFSLSQESLAEQLAVFSKQNGPGQNNRETQTRRAHITTKARQK-RL 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ ++++ + ++ +E + L ++L++ + E P+ Sbjct: 464 RPAHENAERLLLAHMLRDRGVIKKVLDRIG-FEFNLDEHRALAAYLYALYEEGAELTPQN 522 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 +L + +LL + + L Y + + ++++ + + Sbjct: 523 AMSKLQDDTISQLLSDILMLQINQEL--------SEAELSDYVKKVLNHRKWSM----IK 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E E++ A+ + + A L + ++ + Sbjct: 571 EKEQERAEAERQKDFLTAASLAQEIITLNRSLK 603 >gi|21220931|ref|NP_626710.1| DNA primase [Streptomyces coelicolor A3(2)] gi|256787911|ref|ZP_05526342.1| DNA primase [Streptomyces lividans TK24] gi|289771796|ref|ZP_06531174.1| DNA primase [Streptomyces lividans TK24] gi|9910835|sp|Q9S1N4|PRIM_STRCO RecName: Full=DNA primase gi|5640130|emb|CAB51551.1| DNA primase [Streptomyces coelicolor A3(2)] gi|6759563|emb|CAB69756.1| DNA primase [Streptomyces coelicolor A3(2)] gi|289701995|gb|EFD69424.1| DNA primase [Streptomyces lividans TK24] Length = 641 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 143/642 (22%), Positives = 265/642 (41%), Gaps = 44/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKGF Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKIDHLTFSEAVERLAGQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A ++ L +L +RG D A E F +GY+P L LR KGF Sbjct: 120 AHKIAAQWYAEQLATGPEADTGRAFLADRGFDQAAAEHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 S+++++ +GL + DRFR RL++PIR G V+ FG R L + KYLN+P Sbjct: 180 SDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 DTAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDDAVADLVEPRTPLFEFALRQIVARYDLDTPAGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK+ ++ + + L L +++ + W ++ + ++ Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRIAQLARWARDRGGKGPAPDQRQRGGGPQQ 464 Query: 473 KGKLSKKPSL------------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + E LL + P ++ + + + Sbjct: 465 QAGPMTATPRGPALNLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRE 524 Query: 521 FLFSDFVEQ-KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + P++ R+ E + ++ + V + + + + V + Y Sbjct: 525 AIMEAGGAEFGVQDPQDYLVRVREAAPDDTVRAM---VTELAVEAIMLHRGVKGVDEVYA 581 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 A + R R + R+ +I ++ +++ G+ + A + + L Sbjct: 582 GAQLVTVRRRAVERRIRDITGRLTRLSGHGDPAELAAVQNEL 623 >gi|304317434|ref|YP_003852579.1| DNA primase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778936|gb|ADL69495.1| DNA primase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 598 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 169/635 (26%), Positives = 294/635 (46%), Gaps = 40/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+Y +D I ++ I +++ YV R D+ CPFH EKTPSF+ + K Sbjct: 1 MSYSKDVIDRVIEENDIVDIVSNYVSLKRSGK-----DFKGLCPFHHEKTPSFNVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118 Y+CF CH G+ ++F+ + F E+V+ LA AG+ + + + +K + ++ Sbjct: 56 LYHCFGCHASGNVITFVMNIENIGFKEAVEFLADKAGIKIEEENLSGIEYQKKKLKEEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A F++ L + + YL +RGID I+ F LGY+P S L ++L++ + Sbjct: 116 EINRLAAIFYYKCLYSRSGQAALKYLYDRGIDDVTIKRFGLGYSPSSGLELLKYLKEHKY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S + ++ AGL I N+ YDRFRNR++FPI + VI FGGR L KYLN+PE Sbjct: 176 SIDTMVNAGL-ISKSNNGRFYDRFRNRVMFPIIDEKNNVIGFGGRVL-DNMKPKYLNTPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F KGK LY A I+VEGYMD ++L Q+G+ NVV+SL Sbjct: 234 TIVFKKGKTLYGINYAKK------------TREDKFIIVEGYMDAIALYQSGIDNVVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q +L+ K +V+ +D D+ G+ A I + VN + + G+D Sbjct: 282 GTALTLEQGKLIKKYKNIVVISYDADEAGVEAT---IRGLNLLDELNLNVNILTVPNGKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++R G AF+KL+ ++ L++ K+ ++ N P +R + + ++ IKD+ Sbjct: 339 PDEYVRKEGFDAFKKLLEKTDTLIEYKIKKYKQDLDLNNPADRIKYIKKVCKDLSTIKDK 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + Q E + + + +N + + R K+ Sbjct: 399 VKRDVYVSIVAKDAQIPENTIRAEIDQFVKGFVQNNKKIRYTVGNNRHNIKYSGIKKIPS 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ + + ++L D+ L+ + +F+F + + +++ Sbjct: 459 L-----KYLIALLLIDNKLYDKVKEKLDINDIDDELLKSVITFIFERLEDGGHVDIKDLS 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + + + + E N V ++ + LSR+ I Sbjct: 514 FMLDNAKLRDEFNDI------FDILYSEKEINEKIVDDCIREIIK-----DDLSRKIVRI 562 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +K+I G+ EK L+ L ++ ++++ Sbjct: 563 KKEIDDSYIAGDIEKERELLVQLQNYEKEMLKLKN 597 >gi|227524443|ref|ZP_03954492.1| DNA primase [Lactobacillus hilgardii ATCC 8290] gi|227088402|gb|EEI23714.1| DNA primase [Lactobacillus hilgardii ATCC 8290] Length = 605 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 151/639 (23%), Positives = 282/639 (44%), Gaps = 41/639 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P D I+ + + I +++ QYV + N + CPFH+E+TPSF ++ K Sbjct: 1 MKIPEDVIEQVRSQVNIVDVVSQYVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116 ++CFSC G+ F+ + SF E+V+++A + + + ++ Q Sbjct: 56 IFHCFSCGRGGNVFKFMMEIENLSFPEAVKKVAEMEHLDVDSKYFTDAAPASRETSEQKQ 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 LI L E A +HH L + YL RG++ I++++LGYAP R L+ + Sbjct: 116 LIELHEQAVKLYHHILINTKMGESALDYLHHRGVNDETIDLYQLGYAPQQR-LLKPFFDE 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYL 234 + + + ++GL + + DRF +R+++PIR+ GQ +AF GR L+K + KYL Sbjct: 175 RQADYQLLRKSGLFSETQDG-KLRDRFVDRVMYPIRNGTGQTVAFSGRLLAKDSDMPKYL 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF+K K L+N A ++ S +L EG+MDV+S Q G+++ Sbjct: 234 NSPETELFNKRKILFNLDLARPNIR----------SKQPALLFEGFMDVISAYQGGIKSG 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++S+GT+LTE Q+ + +++ +++C+DGD PG +A +AID + V + Sbjct: 284 IASMGTSLTEQQIYDIQRITREVIVCYDGDAPGQKAIKRAID-AFKQTDHQLDLKVVSIP 342 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD FIR G F+ L+ ++ VD + + T + +A I+ Sbjct: 343 DGMDPDEFIRNRGADKFQTLLQQAQSPVDFDLNYLKQEANLKTEEGQAAYISEALKLIST 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I + Y + D Q + R + Q Sbjct: 403 ISSGISQDLYLNRLADSFSIDKQVLKQQLQPLIRKNVTKRANHQIPA-----AQPVNQSP 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + K ++ + LL ++++ + + ++ + + + Q L+ F + + Sbjct: 458 QKRDKVTVAQMQLLNRMLHNHDVWVKVSG-ISGFSFVDEQYQMLYLLAEGYFSKFDQYNV 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E LL +D + + E + +++ L + + + Sbjct: 517 ATFSNLITEDSLQTLLIDID-------MMNLPEEPSPMEIDND----LDVIMNRAPVETK 565 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ + ++ Q + G+ +K L+ L ++ Q E Sbjct: 566 IKKKQAELKQASKIGDVDKQRQLMVDLLKLEQQKRTKEQ 604 >gi|307266218|ref|ZP_07547760.1| DNA primase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918748|gb|EFN48980.1| DNA primase [Thermoanaerobacter wiegelii Rt8.B1] Length = 596 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 297/636 (46%), Gaps = 44/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L ++ + + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEESQLSDQEYRRKKLIDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++A +F++ L + ++ Y+ +RG+ I+ F +GY+P L L++KG+ Sbjct: 116 KINKLAAMYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPQGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR++ KYLN+PE Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RL+ + +V+ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTGDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I + D+ Sbjct: 338 PDEFIKKEGVEAFNQLIENADSLIEFKAKVYRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y ++ Q TE + + R +KN ++ G + + SS K Sbjct: 398 VKREVYISSVAKVAQISENAVRTEVARFVNRKIEKNQKNMYMAGKIRHNIYSSSSKISP- 456 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ L+ + + + + +N +L+ ++ + S + K +I Sbjct: 457 ------EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFEEIMSRLEDGKKTQINDI 510 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + + + ++ ++ + + L+ ++E+ Sbjct: 511 VYLLQDENLISDFNDIIKAFYES-----------ENITEQAIDDIINKILINSLAVKREK 559 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I++ I + G+ +K L+ L ++ +I++ Sbjct: 560 IKRAINEAHMLGDIDKERQLLIELQNCEKEMLKIKN 595 >gi|88798841|ref|ZP_01114423.1| DNA primase [Reinekea sp. MED297] gi|88778321|gb|EAR09514.1| DNA primase [Reinekea sp. MED297] Length = 621 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 171/637 (26%), Positives = 283/637 (44%), Gaps = 32/637 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI LL I +IG +D ++ DYWACCPFH+E +PSF N K FY Sbjct: 5 IPNDFIDSLLDRTDILEVIGNRIDLKKKGK-----DYWACCPFHNENSPSFSVNPGKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C G + FL SF+ES++ LA IAGV +P K ++++ + L L Sbjct: 60 YCFGCGASGTAVKFLQEYDNLSFVESIEELARIAGVEVPREEVSEKARQQQQQRKTLHDL 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + D+F H L ++ + + Y+ RG+ + F++G+AP +L +H R + + Sbjct: 120 MNSCADYFAHQLYQHPYAQGVQDYILGRGLTEDTVHTFQIGFAPPGWDNLIQHFRSENTN 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + L +++ YDRFRNRL+FPIR +G+VIAFGGR +S E KYLNSPET Sbjct: 180 RALLKVGMLT--QNDNGRIYDRFRNRLMFPIRDIKGRVIAFGGRVMSADEKPKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG LY + A L+ II+VEGYMDV++L Q GV+N V++LG Sbjct: 238 PIFHKGHELYGLYEARKALK----------DFDNIIIVEGYMDVVALAQHGVRNAVATLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E ++ L+K + IV CFDGD+ G RAA +A+ + L G + F+ L GEDP Sbjct: 288 TATSETHVQRLFKQTSEIVFCFDGDEAGRRAAIRALTNTMSSLKDGLQARFLFLPDGEDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ ++ G F + + ++ L D L++ + D +A L + IN + + Sbjct: 348 DTLVQKEGHDGFMRRVKQAQSLPDFLYQHLQTQADISRLDGKARLASLAQGWINKVPEGF 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ + + + ++ + + + + Sbjct: 408 MKQLLLNQLSNLVGLSIEQIEQQFKPEPPSVPAEPMPETVIPTAPPPFDDAQGEFYSVPV 467 Query: 480 PSLREAAL--------LLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVEQK 530 RE ++ L LI P + + L ++ + + Q L + + Sbjct: 468 IEKRELSVRIGFVHRALAWLIRFPHLADYVTPETLGRLK-ASGDHQ-LLQRVIELLQQAP 525 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 LC+ G E L + + + D + + + + Sbjct: 526 RKDLYFAFDYLCQHGLRETLSPIAASDYLWLEAANDDHKDEKDFARQELEKILRALTQKA 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++++ + + L + Q Sbjct: 586 PDDEYNALKQRVMALDPSLTDAEKQR-YRELLKQKKQ 621 >gi|325686027|gb|EGD28085.1| DNA primase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 612 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 151/640 (23%), Positives = 281/640 (43%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D ++ FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQKVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 +++ E+GL + + +DRFR+RL+FP+ G +AF GR +S E KYLNSPET Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGPDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHTSSEVLPELAPLAPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--TVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E + + + + ++ + + L L K + R Sbjct: 521 FIPEE---------LQSIIVSTDMTGLPGKITLEELEAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|228999086|ref|ZP_04158668.1| DNA primase [Bacillus mycoides Rock3-17] gi|228760703|gb|EEM09667.1| DNA primase [Bacillus mycoides Rock3-17] Length = 598 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 153/636 (24%), Positives = 270/636 (42%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G SFIE+VQ+L + + +++E I D ++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQENISDDSVIML 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI I F++GYA + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLL+ + + +DRFR R++FPI + +G+V AF GR L ++ KYLNSP Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+K K LYN A +++K ++L EGY DVL+ ++G++ V++ Sbjct: 238 ETPIFYKSKLLYNLHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L G V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG AFE L+ S+ V ++ + E + + ++D Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + E + + L++ + + Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E + L LSR K++ Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562 Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628 ++K + Q+ E ++ L + Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598 >gi|269956943|ref|YP_003326732.1| DNA primase [Xylanimonas cellulosilytica DSM 15894] gi|269305624|gb|ACZ31174.1| DNA primase [Xylanimonas cellulosilytica DSM 15894] Length = 642 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 143/661 (21%), Positives = 262/661 (39%), Gaps = 55/661 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ ++ + I ++ +V G CPFHDE+TPSFH G Y Sbjct: 5 IKREDVEAVRERARIEEIVSAHVTLKPAG----VGSLKGLCPFHDERTPSFHVRPGVGRY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-------PKIEKKEKIQT 115 +CF C GD ++F+ G F E+V+ LA GV L D P ++ + Sbjct: 61 HCFGCGESGDVIAFVQKTDGLGFAEAVEYLADRVGVQLRYEDSRGGDSGPARREEPGRRQ 120 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ VA +F+ L +L ER D E F +GYAP +L HL+ Sbjct: 121 RLVEANRVAAEFYSAQLFGPDAAAGRKFLAERSFDRSDAEKFGVGYAPTGWDALTRHLQG 180 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 KG+++ +++ AGL+ G YDRFR RL++PIR + G V+ FG R L + K+L Sbjct: 181 KGYTQAELVAAGLVSQGQR--GVYDRFRGRLVWPIRDTTGAVVGFGARRLYDDDQGPKFL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+PET+L+ K + LY A + + R +++VEGY DV++ +GV+ Sbjct: 239 NTPETVLYKKSQVLYGIDLAKKAIARDKR----------VVVVEGYADVMAAQLSGVETA 288 Query: 295 VSSLGTALTEYQLRLLWKLS------------------PRIVLCFDGDDPGLRAAYKAID 336 V++ GTA +++ +L ++ FDGD G +AA +A Sbjct: 289 VATCGTAFAGDHAKIVRRLMGDFGAGGGLQLASGQSLGGEVIFTFDGDAAGQKAAVRAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 + + + G DP G A + L+ +PL + + ++ E + Sbjct: 349 EEQRFHA---QTFVAVAADGMDPCDLRIAKGPQAVKALVDSRVPLFEFVIRKVVEGYDLD 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR- 455 T + R + I+D+ ++ Y++++ + E + G + R Sbjct: 406 TVEGRIGALREAAPLVAGIRDRAMQLGYTRSLARWTGMDTDEARREVARAGERPRTPDRS 465 Query: 456 -HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 ++ + E L+ ++ +P + + EL++ + Sbjct: 466 TRAADPVAVVPAPAPTMPLPDPRDPVARTERMALVVVLQYPQHVPPVFDELSEDAFAVPA 525 Query: 515 LQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + + + + + + E+ GEL+ L Q+ A L + Sbjct: 526 WRAVHAAIRAAGGAAAGRTMSGGAWVGAVQEQA-GELVAGLVDQLAVAPLP-----EDRE 579 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 D + + + L+R + + ++ ++ E + L + Q + Sbjct: 580 DAIARFVADVVRAVQDLGLTRLIADAKSRLLRLDPGAEPQAYREAFQTLLSMEAQRRTLR 639 Query: 633 S 633 Sbjct: 640 E 640 >gi|296130010|ref|YP_003637260.1| DNA primase [Cellulomonas flavigena DSM 20109] gi|296021825|gb|ADG75061.1| DNA primase [Cellulomonas flavigena DSM 20109] Length = 651 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 137/668 (20%), Positives = 252/668 (37%), Gaps = 57/668 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 R+ ++ + + I ++G +V G CPFHDE++PSFH G Sbjct: 4 RILREDVEAVRERVRIEEIVGAHVALRPAG----VGSLKGLCPFHDERSPSFHVRPQVGR 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C GD ++F+ + G F ++V+ LA+ G+ L + ++ + L Sbjct: 60 YHCFGCGEGGDVIAFVQQVDGLGFTDAVEYLASRVGMQLRYEEGGGPARPGEEPGKRRRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA +F+ L + +L ERG D A + F +G+AP L HLR +G Sbjct: 120 LDAHRVAEEFYREQLVTPQAAVARTFLAERGFDRAAADEFGVGFAPQGWDGLLRHLRGRG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F+E ++ +GL+ G YDRFR RL++PIR G+ + FG R L ++ KYLN+ Sbjct: 180 FTEAELTASGLVSQGQR--GIYDRFRGRLVWPIREVTGETVGFGARRLLDDDNGPKYLNT 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET L+ K LY A + K +++VEGY DV+++ +GV+ V+ Sbjct: 238 PETPLYRKSHVLYGIDLAKREISKQ----------KQVVVVEGYTDVMAMHLSGVRTAVA 287 Query: 297 SLGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338 + GTA R++ + + IV FDGD G +AA +A Sbjct: 288 TCGTAFGTDHARIVRRLVGDHGGAGGVQLAGGASVGGEIVFTFDGDAAGQKAALRAFGED 347 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G DP + G A L+ PL + + + T Sbjct: 348 QAFSA---QTFVAVEPSGMDPCDLRQARGPDAVAALVASRQPLFEFVIRSTLAAHDLGTA 404 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF--------QKYITEHSGYGRYW 450 + R + I+D LR Y + + L R Sbjct: 405 EGRIRALRAAAPVVASIRDSALRPEYERLLAGWLGMDDVSGVRRAVADARRAPRPGARQA 464 Query: 451 KKNARHRDQKGPSQRLMQSSLVK---GKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 ++ R P + + + E L ++ HP ++ ++ +L Sbjct: 465 DRDVVARPGGRPDDAPAVVPVARMAAPDRRDPVAQVERTALEVVLQHPTLVPREFDDLPA 524 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEI--HQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + + + E + + + + + Sbjct: 525 DACAAPAYRAVHEAVRAAGGIAVAVDIATHGGEAAWVEAVIEAAAEPVRPLLTELSVAPL 584 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + + L+R+ ++ ++ ++ + + L+S L ++ Sbjct: 585 PEDRPT--ALPAFVRGVVTRLVDVGLTRRVADVRGRLQRLGDDADPSEQRALLSELLDLE 642 Query: 626 IQIHQIES 633 Q + + Sbjct: 643 AQRRTLRA 650 >gi|229098766|ref|ZP_04229704.1| DNA primase [Bacillus cereus Rock3-29] gi|228684610|gb|EEL38550.1| DNA primase [Bacillus cereus Rock3-29] Length = 598 Score = 365 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQVQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASLAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIHTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVSFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + +V QG+ + L +K + K E Sbjct: 519 LSWLSDEKLKNIITDISTD-------EFINPEYTEEVLQGHLETLRRHKEKLV----KME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|229163238|ref|ZP_04291193.1| DNA primase [Bacillus cereus R309803] gi|228620301|gb|EEK77172.1| DNA primase [Bacillus cereus R309803] Length = 602 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 275/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 8 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 63 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 122 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 123 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 182 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 183 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 241 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 242 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 291 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 292 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 348 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 349 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 409 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQVKQVSKPSQIVQT----KPKL 464 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 465 TGFERAEREIIYHMLQSAEVAVRMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 522 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + S N + Q L R +K E Sbjct: 523 LSWLSDEKLKNIITDI----------STDEFINPEYTEEVLQGHLETLSR-HQEKLEKME 571 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 572 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 601 >gi|152984629|ref|YP_001346115.1| DNA primase [Pseudomonas aeruginosa PA7] gi|150959787|gb|ABR81812.1| DNA primase [Pseudomonas aeruginosa PA7] Length = 663 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 178/677 (26%), Positives = 288/677 (42%), Gaps = 86/677 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPSDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLAAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ +S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDSGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMAEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQK--------------------------------------- 438 LR Q + + + Sbjct: 409 NNLRQLMRQKLSEITGLSGENIGQLAQQSPPPAMDHGTTGAFDGDDYFAASAYYENEPSH 468 Query: 439 ------------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + R + +K + + Sbjct: 469 APFESAPGYADAQPRKAWNKDRKPWDGKKWDGRKKWDKGGRGDFKAPQRTPVSVESTTLN 528 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L TL++HP + + + + + +L L + ++ R Sbjct: 529 ALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTPQ 587 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 GRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSVM 634 Query: 607 AKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 QKSYSELTDEEKALLRE 651 >gi|229104925|ref|ZP_04235582.1| DNA primase [Bacillus cereus Rock3-28] gi|229117790|ref|ZP_04247155.1| DNA primase [Bacillus cereus Rock1-3] gi|228665653|gb|EEL21130.1| DNA primase [Bacillus cereus Rock1-3] gi|228678499|gb|EEL32719.1| DNA primase [Bacillus cereus Rock3-28] Length = 598 Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats. Identities = 160/630 (25%), Positives = 277/630 (43%), Gaps = 40/630 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQVQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASLAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIHTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLKVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQVVQT----KPKL 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ ++ + + + E + + L++ + + Sbjct: 461 TGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + +V QG+ + L +K + K E Sbjct: 519 LSWLSDEKLKNIITDISTD-------EFINPEYTEEVLQGHLETLRRHKEKLV----KME 567 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 I ++ Q+ E ++ L + Sbjct: 568 IIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 597 >gi|227495141|ref|ZP_03925457.1| possible DNA primase [Actinomyces coleocanis DSM 15436] gi|226831593|gb|EEH63976.1| possible DNA primase [Actinomyces coleocanis DSM 15436] Length = 663 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 145/681 (21%), Positives = 269/681 (39%), Gaps = 69/681 (10%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M+ + I+ + + + ++ YV N + CPFHDE TPSF+ N + Sbjct: 1 MSGLIIKADIEKVKDTVDLEEIVSNYVTLRPAGINT----FKGLCPFHDENTPSFNVNTA 56 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDL 117 +GF++CF C GD +SFL + SF ++V+ LA G+ L + K + + L Sbjct: 57 RGFWHCFGCGEGGDAISFLQKIDHLSFTDAVEHLAGKYGITLRYEEGKAPTQDYGKRQRL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + VA +++ L + +L ERG + A + F +G+AP L LR +G Sbjct: 117 LDMHRVAEEYYQAQLHSPEALPGRQFLSERGFSAEAAKHFGVGFAPSGWNGLSNVLRAQG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F+++++I GL S YDRFR RL++PIR G I FG R L ++ KYLN+ Sbjct: 177 FTDQELITGGLASQ--GSRGVYDRFRGRLMWPIRDLTGATIGFGARRLLPDDNGPKYLNT 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET ++HK K LY A + +++VEGY DV++ AG+ V+ Sbjct: 235 PETPIYHKSKVLYGLDLAKRSIAAK----------RQVVIVEGYTDVMAAHLAGIDTAVA 284 Query: 297 SLGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337 S GTA ++++ + ++ FDGD G +AA KA Sbjct: 285 SCGTAFGSEHVKIVRRLLGDIADPSMGLQLASGESRGGEVIFTFDGDAAGQKAALKAYGE 344 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 + + RG DP G A KL+ +PL + + + +T Sbjct: 345 DQNFA---LQTFVAIEKRGMDPCDLRIHEGDEAIRKLVAARIPLFEFVLRTTLTAVDLST 401 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 P+ R ++ I+D+ L+ Y + + L + +E + + Sbjct: 402 PEGRVAGLRAAAPVVSSIRDRALQKEYVRLLSGWLGMEARDVASEVARAAKMAAYAETQP 461 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLR-----------EAALLLTLINHP-AILQEQYQEL 505 + Q + + L E+ L +++ P L + E+ Sbjct: 462 QAQVKPQSETAKVTSPTEAESEAPLAYGDMRSPRFKLESQALASVLQCPVDCLGTGFDEI 521 Query: 506 ADIRYDNNELQKLWSFL-----FSDFVEQ------KYFLPEEIHQRLCERGFGELLKQLD 554 + + + +++ L + F P + E EL + Sbjct: 522 DLLTFTSPAFREVHKLLQTCGGLARFEAHLQAAERAIPDPAVAVAKATEGWNRELFDRAS 581 Query: 555 RQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 V+ + + + +++ + ++R E++ +I ++ A G + Sbjct: 582 NPVKQVLHALLVVVLPQDEAEKLGYFARSVTISLVKTSIARSIEQLRFEIGRLDALG--Q 639 Query: 613 KTAILISILHEVHIQIHQIES 633 ++ + + + ++ Sbjct: 640 DSSAEFRKMLTLEERRRALDE 660 >gi|329934713|ref|ZP_08284754.1| DNA primase [Streptomyces griseoaurantiacus M045] gi|329305535|gb|EGG49391.1| DNA primase [Streptomyces griseoaurantiacus M045] Length = 635 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 151/640 (23%), Positives = 264/640 (41%), Gaps = 46/640 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD L+F+ + SF E+V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTLTFVMKIDHLSFSEAVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A ++ L + +L RG D A F +GY+P L LR KGF Sbjct: 120 AHKLAAQWYAEQLATHPEADTGRAFLAARGFDQTAAVHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 ++++++ +GL + DRFR RL++PIR G+V+ FG R L + KYLN+P Sbjct: 180 TDKELLLSGLAQE--GRRGPIDRFRGRLMWPIRDIGGEVVGFGARKLYEADNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+ K + LY A + KS R ++VEGY DV++ AGV +++ Sbjct: 238 DTALYRKSQVLYGIDLAKKDIAKSSRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGTEHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A +L PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLVKGDEAVAELAEPRTPLFEFALRQIVSRYDLDTPAGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----------NARHRDQKGP 462 IK+ ++ + + L L +++ G W + + R P Sbjct: 405 ARIKNSGAQHEVAVQLAGLLGILDTQFVVRRVGQIARWARERGGRGPAPAGSGPRQSHEP 464 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 L E LL + P ++ + + + + Sbjct: 465 GPSRPVPRGPALNLRNPVYATERELLKLALQRPELVSPAFDAYGTDEFTAAPYAAVREAI 524 Query: 523 FSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 EQ P+E R+ E + ++ + ++ + T + + Y Sbjct: 525 QEAGGAEQGVRDPQEYLLRVREAAPDDTVRSMVTELAVEAILRRTVD-------EHYAGE 577 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + R R + R+ +I+ Q+ ++ A G+ + + + + L Sbjct: 578 QLVTVRRRAVERRVRDIQSQLTRLAAHGDPAQLSAVQNEL 617 >gi|50119629|ref|YP_048796.1| DNA primase [Pectobacterium atrosepticum SCRI1043] gi|49610155|emb|CAG73595.1| DNA primase [Pectobacterium atrosepticum SCRI1043] Length = 584 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 168/607 (27%), Positives = 277/607 (45%), Gaps = 47/607 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVETIEELATQYGLEVPYETGTGPTQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL +RG+ + I F +G+AP ++ + + Sbjct: 119 LMGQLSGFYQQALSQSIGTSALQYLQQRGLSAEVISHFAIGFAPPGWDNVLKRFGRNNDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 RSTLNDAGMLV-TNDQGRTYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHPELKR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDLVVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK FE+ + +LPL L++ + ++PD R +L I + + Sbjct: 347 DTLVRKEGKAVFEQRMEHALPLSQFLFETLQQQVDMSSPDGRTKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + ++ + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLDRLLPKVADQAQSYQQPQLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ +P + E L I D L+ L + Sbjct: 452 -----RILVGLLVQNPRLAAEVPDLALEGIEEDKVAGLSLFQDLVKTCNASPGMNMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANI------VDVRQGYQQALALYKRFRLLS 592 ++ + + + L+ + + I + + Q L R L+ Sbjct: 507 EKYRDSKYRKQLETMASWNHMIEEEELDEKFRISLAELYDQLLKQRQDTLIARDRTHGLN 566 Query: 593 -RQKEEI 598 ++K+E+ Sbjct: 567 AKEKKEL 573 >gi|295394809|ref|ZP_06805024.1| DNA primase [Brevibacterium mcbrellneri ATCC 49030] gi|294972405|gb|EFG48265.1| DNA primase [Brevibacterium mcbrellneri ATCC 49030] Length = 625 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 149/619 (24%), Positives = 252/619 (40%), Gaps = 37/619 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 R+ I ++ PI ++G+YV ++ CPFHDE+TPSF+ S G Sbjct: 4 RIGREDIDEVRSRSPIDEVVGEYVSLKNAGIDSK----KGLCPFHDERTPSFNVRPSIGR 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD F+ + G +F+E+VQRLA AGV L ++ ++ + Sbjct: 60 YHCFGCGKSGDVFEFIMEMDGLTFVEAVQRLAERAGVQLSYTGAPSGDSGSVRQSIMEMH 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +VA DF+ + Y+ RG + ++ F +G++P L HLR +GF E Sbjct: 120 QVAADFYREQFASPVASVAREYMAGRGFEQQTLDTFGVGFSPQGWDGLLSHLRGRGFRVE 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240 + + GL+I YDRFR RL++PIR G+VI FG R L + KYLN+PET Sbjct: 180 DMEKGGLVI--AGRRGHYDRFRGRLMWPIRDVTGRVIGFGARKLFDEDQGPKYLNTPETP 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK K LY A + K+ R ++VEGY DV++ +GV V++ GT Sbjct: 238 VYHKNKVLYGLDLAKRPIAKTKRA----------VVVEGYTDVMAAHISGVTQAVATCGT 287 Query: 301 ALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 A + +L ++ ++ FDGD+ G +AA KA L + + V+ Sbjct: 288 AFGSEHVSILRRMMNDDATAEVIFTFDGDEAGQKAALKAFGDDQRFLA---QTSVVVEPG 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DP + G+ A LI PL + + +T + + I I Sbjct: 345 GRDPADLWKEKGEGAVRDLIESRRPLFEFVIDMTVAQFDASTVEGQVAAIRAAAPVIAGI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 KD LR Y + + + + + Y R + + Q+ + + Sbjct: 405 KDVALRPGYERYVAGLVGVDTDQVVRAVRAYQRNQNQRQQSNQQQPNQPQHQFQQATQSP 464 Query: 476 LSKKPS------LREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVE 528 LS E L+ + +P + + + L +D+ + + + Sbjct: 465 LSGPDPTQSAGYRVERGALMVALQYPQYVNAKLFDALNGKVFDDPRHRAIHEAMKQA--- 521 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 E R + +L V + + A D + Y + + Sbjct: 522 GGVRSGAEYPARWADAVREATPHELVPLVSELTMAPLP--ATNADGIERYSRGIVARLFD 579 Query: 589 RLLSRQKEEIEKQIAQVTA 607 + + R + ++ + Sbjct: 580 KDMVRISGLLHARLRRTDP 598 >gi|71281870|ref|YP_270984.1| DNA primase [Colwellia psychrerythraea 34H] gi|71147610|gb|AAZ28083.1| DNA primase [Colwellia psychrerythraea 34H] Length = 585 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 163/616 (26%), Positives = 270/616 (43%), Gaps = 49/616 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 R FI DLL I +L+ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RISRQFIDDLLNRADIVDLVDSRVPLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---- 117 Y+CF C G+ +SFL F+++V+ LA+ G+ + + +E+ + Sbjct: 59 YHCFGCGEHGNAISFLMEFDRLDFVDAVEELASHCGMEVVREENTASPEEQRRQQQVYQQ 118 Query: 118 ----IRLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 L+ + FF LK A DK YL RG+ ++ F +GY D+ + Sbjct: 119 KQDDYELMSQISRFFQQQLKVASDKERAIDYLKARGLSGEVVKRFGIGYISDAWDGVMNS 178 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + G + +++I+ G+ I GD YDRFR R++FPI RG+VI FGGR L E K Sbjct: 179 FSRNGQANQQLIDLGMAISGDKK-RPYDRFRGRIMFPISDKRGRVIGFGGRVL-GDEKPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET ++HKG+ LY A ++ R +I+VEGYMDV++L Q GV Sbjct: 237 YLNSPETRVYHKGQELYGLHEAKQANKQLKR----------LIVVEGYMDVVALAQHGVD 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V+SLGTA T QL+ L++ P ++ C+DGD G AA++A++ L + G + FV Sbjct: 287 YAVASLGTATTFEQLQTLFRTVPDVICCYDGDRAGRDAAWRAMENALPLIRDGFSLKFVF 346 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L GEDPDS I G+ AFE +I ++PL L+++ + ++ + RA L + + Sbjct: 347 LPDGEDPDSLIGTQGQQAFETIIDNAVPLSKFLFEQLMQKVDMSSLEGRAALVESFQPYL 406 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + D L+ I + ++++ + + + + + + Sbjct: 407 SKLPDSILKDAMLNEIANNFGTGSEQFLAKFTKSIKSTAVKTAVKTRTKVTPV------- 459 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + L L+ HP I + L + + Sbjct: 460 ------------RSALALLLEHPHIANSLGDINVLQPLTVPGIPLLMQ-VLGICQQNPDI 506 Query: 533 LPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ + G L +L V + + +Q + + Sbjct: 507 KSPQLLESFRGTEQGTQLAKLMCWQHNVEADAATDVFLDNIEKLLNDFVEQRTEVLLQKA 566 Query: 590 LLSRQKEEIEKQIAQV 605 + E ++++ + Sbjct: 567 RAGQMTAEEKQELQAL 582 >gi|194467796|ref|ZP_03073782.1| DNA primase [Lactobacillus reuteri 100-23] gi|194452649|gb|EDX41547.1| DNA primase [Lactobacillus reuteri 100-23] Length = 621 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 160/646 (24%), Positives = 280/646 (43%), Gaps = 41/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+ I ++ + I ++IG+YV + N CPFHDEKTPSF N+ K F Sbjct: 3 KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ FL L F+++V+ +A + + +P + L Sbjct: 58 FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPLNNENRQLFD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + A +HH L + YL +RG+ IE F LGYAPD R L+ +Q+ Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236 + + ++GL + DRF R+++PI++ +GQVIAF GR + ++ KYLNS Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F+K + L+NF A +K R + L EG+MDV+S AG++N ++ Sbjct: 236 PETPIFNKRRTLFNFDVARKATRKDGR----------LYLFEGFMDVISAFAAGIENGIA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT+ TE Q+ ++ + + ++ +C+DGD PG A +AI LV H +V V L G Sbjct: 286 SMGTSFTEEQVAIIGRATKQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG F L + + + ++ + +E + I + Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469 + Y Q + Q T+ + + + R ++ PS + Sbjct: 406 QAPLEEDMYLQRLASEFNLDRQTLKTQLDQLRQQLGIHNQPRIKQQPSLVRHQQFQQTSE 465 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + L E LL ++ + + + + + + Q L+ S F E Sbjct: 466 EEHRKVKLSRTELAEQILLRYMLYDREVWMHVTSD-HNFHFAHEKYQTLYLLAASYFSEN 524 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L E L Q++ D + + + + Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIAEQT 573 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L+ Q + + Q+ + + E L L ++ Q +++++E Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619 >gi|229006634|ref|ZP_04164268.1| DNA primase [Bacillus mycoides Rock1-4] gi|228754495|gb|EEM03906.1| DNA primase [Bacillus mycoides Rock1-4] Length = 598 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 154/636 (24%), Positives = 271/636 (42%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G SFIE+VQ+L + + +++E I D ++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQENISDDSVIML 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI I F++GYA + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLL+ + + +DRFR R++FPI + +G+V AF GR L ++ KYLNSP Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+K K LYNF A +++K ++L EGY DVL+ ++G++ V++ Sbjct: 238 ETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L G V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG AFE L+ S+ V ++ + E + + ++D Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + E + + L++ + + Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E + L LSR K++ Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562 Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628 ++K + Q+ E ++ L + Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598 >gi|228993036|ref|ZP_04152959.1| DNA primase [Bacillus pseudomycoides DSM 12442] gi|228766684|gb|EEM15324.1| DNA primase [Bacillus pseudomycoides DSM 12442] Length = 598 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 154/636 (24%), Positives = 271/636 (42%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSLDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G SFIE+VQ+L + + +++E I D ++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQDQQEDISDDSVIML 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI I F++GYA + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNVALSYLLNRGITKEMIAKFEIGYASPGWDAAAKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLL+ + + +DRFR R++FPI + +G+V AF GR L ++ KYLNSP Sbjct: 179 FSLSTMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+K K LYNF A +++K ++L EGY DVL+ ++G++ V++ Sbjct: 238 ETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L G V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LSQVGCHVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG AFE L+ S+ V ++ + E + + ++D Sbjct: 345 DPDEYVQQYGTAAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKIQQKQTKQISKPPQIVQ----AKPKF 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + E + + L++ + + Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E + L LSR K++ Sbjct: 519 LSWLSDEKLKNIITNI------STDEFINPEYSDE----------ILQGHLEALSRHKQK 562 Query: 598 IEK-----QIAQVTAKGEAEKTAILISILHEVHIQI 628 ++K + Q+ E ++ L + Sbjct: 563 LKKMETIFALKQMEKTDPVEAAKFYVAYLQNQKARR 598 >gi|320539900|ref|ZP_08039559.1| putative DNA primase [Serratia symbiotica str. Tucson] gi|320030086|gb|EFW12106.1| putative DNA primase [Serratia symbiotica str. Tucson] Length = 582 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 171/630 (27%), Positives = 282/630 (44%), Gaps = 53/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRLFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 YYCF C G+ + FL F+E+++ LA I G+ +P + + + L + Sbjct: 59 YYCFGCGAHGNAVDFLMNYDRLEFVETIEELATIHGLEVPYEAGTGLTQIERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SL YL +RG+ I F +G++P + + + Sbjct: 119 LMEQLSAFYQQSLHQPAGTLARNYLQQRGLSDDVIRHFAIGFSPAGWDIALKRFGRDNDA 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ ++ SYDRFR R++FPIR RG+VIAFGGR KYLNSPET Sbjct: 179 RSALNDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIAFGGRV-VGDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQSHPTLQR----------VLVVEGYMDVVALAQYGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRATDNVICCYDGDRAGREAAWRALETTLSYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GKT FE+ + + PL L++ ++PD R +L I+ I + Sbjct: 347 DTLVRKEGKTVFEQRMELAQPLSTFLFETLMPQVDLSSPDGRTKLSSLAIPMISQIPSET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L + + + + K + Sbjct: 407 LRLYLRQQLGQKLGMPDEFQLEKLLSKQVENASPYQAPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L + L+ L + Q ++ + Sbjct: 452 -----RILIGLLVQNPRLA-TLIPSLEGLEQTKQAGLPLFVELVQTCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L+ L + + E +D ++ L ++ E + Sbjct: 506 LYRDNKLSQQLETLATW--NHMIVDDRVEQTFLDTLASLYDSV--------LEQRLEAL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIH 629 IAQ G +++ + L+++ + + Sbjct: 555 --IAQARTHGLSQEEREEVRSLNQILAKKN 582 >gi|162149106|ref|YP_001603567.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5] gi|209545150|ref|YP_002277379.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5] gi|161787683|emb|CAP57279.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5] gi|209532827|gb|ACI52764.1| DNA primase [Gluconacetobacter diazotrophicus PAl 5] Length = 619 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 173/585 (29%), Positives = 257/585 (43%), Gaps = 15/585 (2%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F+++L PI+++IG+ R N + ACCPFH EKTPSF+ D Sbjct: 1 MALDPAFLEELRARTPIASVIGRRTKLVRSGRN-----WKACCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C GD +SF+ G SF E+V LA AG+ +P P+ + E+ L + Sbjct: 55 -FHCFGCGAHGDVISFVMQSEGRSFPEAVAELAGEAGLEVPRASPREREAEQRARGLSDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++ + L + YL RG+ I F LG++ D R L L G + Sbjct: 114 LDLVQAAWVRRLHAPEGRAGLAYLRGRGLSDETIAGFGLGWSGDGRGGLLNELAPHGVTP 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + +AGL+ ++ + F NR+ FPIR RG +++FGGR L KYLN PET Sbjct: 174 EMLAQAGLMRVDEDGRPKGELFFNRVTFPIRDRRGSLVSFGGRIL-GDGQPKYLNGPETA 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K + L+ R +++VEGYMDV++L QAG V+ LGT Sbjct: 233 LFSKRRTLFGMDR---ARAALRTARPRGAPPVELVVVEGYMDVIALHQAGFPGAVAPLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+ LW+++ +LCFDGD G RAA KA + L L + F L GEDPD Sbjct: 290 ALTSEQMEALWQMAAAPILCFDGDGAGQRAAVKAAETALPLLDINRTLRFCALPEGEDPD 349 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G A L+ + P+ +L+ T+ P++RA + L I D+ L Sbjct: 350 SLLRGQGSGAVAALLEGARPIGHVLFDLLTQGVRDPGPEQRAAVRRRLVEAAALIADKGL 409 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + DR F+ Y R + R ++ S+ + Sbjct: 410 AAEYRSTLLDRF---FETYRRRPGQGKRAGQGGQRGDGRQAGVSWPAGSAPAPFDEAAAA 466 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 R L L+ HP IL E + L ++ + + + + +R Sbjct: 467 QERMRILTAILLRHPHILPEVEDAYCRLDLP-PALARVRAAVMDLAASGDLTDAKALDRR 525 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 L E G E + SA + VDV Q + AL Sbjct: 526 LDEGGLAEERMAVVAARPLPMSLSAPDDLMAVDVVQEWWHFFALL 570 >gi|326390578|ref|ZP_08212134.1| DNA primase [Thermoanaerobacter ethanolicus JW 200] gi|325993403|gb|EGD51839.1| DNA primase [Thermoanaerobacter ethanolicus JW 200] Length = 596 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 297/636 (46%), Gaps = 44/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L ++ + + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEESQLSDQEYRRKKLIDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++A +F++ L + ++ Y+ +RG+ I+ F +GY+P L L++KG+ Sbjct: 116 KINKLAAMYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPQGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR++ KYLN+PE Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RL+ + +V+ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTGDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I + D+ Sbjct: 338 PDEFIKKEGVEAFNQLIENADSLIEFKAKVYRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y ++ Q TE + + R +KN ++ G + + SS K Sbjct: 398 VKREVYISSVAKVAQISENAVRTEVARFVNREIEKNQKNMYMAGKIRHNIYSSSSKISP- 456 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ L+ + + + + +N +L+ ++ + S + K +I Sbjct: 457 ------EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFEEIMSRLEDGKKTQINDI 510 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + + + ++ ++ + + L+ ++E+ Sbjct: 511 VYLLQDENLISDFNDIIKAFYES-----------ENITEQAIDDIINKILINSLAVKREK 559 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I++ I + G+ +K L+ L ++ +I++ Sbjct: 560 IKRAINEAHMLGDIDKERQLLIELQNCEKEMLKIKN 595 >gi|317506971|ref|ZP_07964740.1| DNA primase [Segniliparus rugosus ATCC BAA-974] gi|316254729|gb|EFV14030.1| DNA primase [Segniliparus rugosus ATCC BAA-974] Length = 623 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 152/643 (23%), Positives = 258/643 (40%), Gaps = 42/643 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ + I+ ++G YV CPFHDE+TPSF S+GFY Sbjct: 2 IAPADIEAIRERAQIAEVVGDYVSLRAAG----HDRLTGLCPFHDERTPSFQVTPSRGFY 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD F+ + F+E+V+ LA L VD E+ + L+ Sbjct: 58 HCFGCGESGDIYRFIQNMEHVGFVEAVEMLADRIKFQLTRVDDTEERSRDRGTKRRLLSA 117 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 EVA +F+ L +L RG D E F G+AP L HLR KGF+ Sbjct: 118 NEVAAEFYAARLMLGEEAAPAREFLKGRGFDRELAERFGCGFAPRGWDHLVRHLRSKGFA 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E ++ EAGL G DRFR RL++PIR++ +VI FG R + + + KYLN+PE Sbjct: 178 ESEMEEAGLARKGQR--GLVDRFRGRLLWPIRNASREVIGFGARRIFEDDDGPKYLNTPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + L+ A + +++VEGY DV+++ AGV V+S Sbjct: 236 TKLYKKSQVLFGLDQAKRDIAAK----------HQVVVVEGYTDVMAMHAAGVPTAVASC 285 Query: 299 GTALTEYQLRLLW------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA + ++ ++ FDGDD G AA KA + + + L Sbjct: 286 GTAFGSEHIGVIRRLLLDDNSRGEVIYTFDGDDAGKAAALKAWEGDQSLVA---QTFVAL 342 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + DP G+ A +L+ + +PL++ + T + R + Sbjct: 343 MPEKLDPCDTRLQLGEEALRELVAKRVPLLEFATRAAIAEFDLATAEGRVGALRRTVPMV 402 Query: 413 NHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IKD LR Y++ + + + + + GP+ R + Sbjct: 403 AKIKDVALRDEYARQLAGWVGWEDTAQVLHRVREESGEKSARRPSSQGGGPAPRTQR--- 459 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + ++ S RE+ L L+ HP + EQ+ ++ + + + + Sbjct: 460 -RPSSARDWSQRES--LKALLQHPKLAAEQFAGVSPTVFALPDYRAIRDGAMRAIDSAPG 516 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 Q + E+ E L+ L ++ + ++ + Y A+ + Sbjct: 517 LEGHSWVQAVREQTDDERLRTLVAELAVEPIATSHEQMP------RYVGAVLARLELFDV 570 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q E++ ++++ G + A + L + ++ Q Sbjct: 571 EDQIAELKSELSRSEGAGGEGRVAEVFGELVALESYRRALQKQ 613 >gi|85058230|ref|YP_453932.1| DNA primase [Sodalis glossinidius str. 'morsitans'] gi|84778750|dbj|BAE73527.1| DNA primase [Sodalis glossinidius str. 'morsitans'] Length = 582 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 175/596 (29%), Positives = 283/596 (47%), Gaps = 42/596 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----FHACCPFHHEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA G+ +P ++K + L + Sbjct: 59 YHCFGCGTHGNAIDFLMNYDRLEFVESIEELAAQHGLDVPYETGTGPNQQKRHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ + F+ +L+ +YL +RG+ I F +G+AP ++ + + Sbjct: 119 LMDKLSGFYQQALQAQTASDARHYLQQRGLSEAVINHFAIGFAPPGWDNVDKRFGRSAED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ DN +YDRFR+R++FPIR RG+VIAFGGR L +G+ KYLNSPET Sbjct: 179 RASLNDAGMLVVNDNG-RTYDRFRDRIMFPIRDKRGRVIAFGGRILGEGQP-KYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQRQHPELSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + R++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLYRATDRVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFEK I ++ PL L++ ++PD RA+L I + + Sbjct: 347 DTLVRKIGKEAFEKYIEQAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLIGQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRLYLRQQLGNKLGILDDSQLEKLLPKAALKANISPQSRIKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ HP + + + L+ L Q ++ + Sbjct: 452 -----RILIGLLVQHPRLSALVP-TVQGLEQAIQPGVPLFVELVQTCQAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 E L+ L + + EA VD ++ +++ L++R + Sbjct: 506 HYRENKSYSQLETLATW--NHMIIDEMIEATFVDTLASLYDSILEHRQEALIARDR 559 >gi|308535384|ref|YP_002140483.2| DNA primase [Geobacter bemidjiensis Bem] gi|308052729|gb|ACH40687.2| DNA primase [Geobacter bemidjiensis Bem] Length = 585 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 145/635 (22%), Positives = 275/635 (43%), Gaps = 55/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P + ++++ PI +I Y+ + N Y CPFH EKTPSF+ N ++ Sbjct: 1 MSMIPDEKVREVRERAPILQVISDYMSLRKSGAN-----YQGICPFHGEKTPSFNVNPAR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117 G ++CF C G+ F+ + G SF ++V+ LA GV +P ++K Q Sbjct: 56 GIFHCFGCGAGGNSFDFVMRMEGLSFPQAVKFLAKKVGVEIPERPLSRDEKRKMDEQEQA 115 Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + ++A +++ L++ YL +RG+D +++G+AP +L + L++K Sbjct: 116 FHINDLACEYYRRVLESDEAGAAGRGYLQQRGVDQETAATYRMGFAPAGWDNLAKFLQRK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G +E+ + GLL + YD FRNRL+F I G+ I FGGR + KY+NS Sbjct: 176 GVPQEQAEKLGLLRKREGRDGYYDTFRNRLLFTISDLHGRAIGFGGRVM-DDSLPKYINS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE++++HK + L+ A ++ I+VEGY D L+L +AG NVV+ Sbjct: 235 PESVVYHKSEVLFGVDLAKKGMR----------EQGSAIVVEGYFDHLALYRAGYTNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTALT ++LL + + R + FDGD+ G +A ++++L L G V + G Sbjct: 285 TCGTALTPPHVKLLRRYAERAYMLFDGDEAGRKATVRSMEL---FLEEGFPARVVEVPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD+FIR G AF L+ +SLP+ + + ++ + + + ++ I Sbjct: 342 DDPDTFIRREGGAAFAPLLEQSLPIFESFYLGVLKSLDIRGVEGKVAFVNEVSPRLSKIS 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D R Y + I + + + Sbjct: 402 DPVERGLYEKEICRAVGIDQAMLHKRVGIPAAAPRPQQSKAAPPRNA------------- 448 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL + +P ++ AD + L+ L + ++ + Sbjct: 449 -----ATEEVLLTLMAKYPEVVLRVRDHGADKLFSGAHLR-LAEAMIAEAGQG-DLDLSR 501 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +++ + + R L+ ++ + ++Q +R L + Sbjct: 502 VLEQIESP---------EERSRLFSLFVEDAHLEDMNAVKAFEQCCQALER-HALKGGGK 551 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + +++A V ++ + +++ L + + ++ Sbjct: 552 ALARELATVDP--DSPRYLEILAELERLRNKKSKL 584 >gi|227544907|ref|ZP_03974956.1| DNA primase [Lactobacillus reuteri CF48-3A] gi|300910066|ref|ZP_07127526.1| DNA primase [Lactobacillus reuteri SD2112] gi|227185119|gb|EEI65190.1| DNA primase [Lactobacillus reuteri CF48-3A] gi|300892714|gb|EFK86074.1| DNA primase [Lactobacillus reuteri SD2112] Length = 621 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 159/646 (24%), Positives = 280/646 (43%), Gaps = 41/646 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+ I ++ + I ++IG+YV + N CPFHDEKTPSF N+ K F Sbjct: 3 KIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNL-----IGLCPFHDEKTPSFSVNEEKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ FL L F+++V+ +A + + +P + L Sbjct: 58 FYCFGCHRSGNVFQFLMELKHIDFVDAVKEIANDSNIKIPEQYVSVPAKPLNNENRQLFD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + A +HH L + YL +RG+ IE F LGYAPD R L+ +Q+ Sbjct: 118 LHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGYAPDQR-ILKPFFQQQKV 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNS 236 + + ++GL + DRF R+++PI++ +GQVIAF GR + ++ KYLNS Sbjct: 177 DYQLLRKSGLFSEDQQG-ELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F+K + L+NF A +K R + L EG+MDV+S AG++N ++ Sbjct: 236 PETPIFNKRRTLFNFDVARKAARKDGR----------LYLFEGFMDVISAFAAGIENGIA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT+ TE Q+ ++ + + ++ +C+DGD PG A +AI LV H +V V L G Sbjct: 286 SMGTSFTEEQVAIIGRATRQLDICYDGDQPGQNAIDRAISLVNDHRPNQLQVKVVQLPAG 345 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG F L + + + ++ + +E + I + Sbjct: 346 IDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALKVIAQV 405 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQS 469 + Y Q + + Q T+ + + + ++ PS + Sbjct: 406 QVPLEEDMYLQRLAGEFKLDRQTLKTQLDQLRQQLGIHNQPWIKQQPSLARHQQFQQTSE 465 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + L E LL ++ + + + + + + Q L+ S F E Sbjct: 466 EEQQKIKLSRTELAEQILLRYMLYDREVWMHVTAD-HNFHFAHEKYQTLYLLAASYFSEN 524 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L E L Q++ D + + + + Sbjct: 525 GSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDM-----------RAIDDCIHMIVEQT 573 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L+ Q + + Q+ + + E L L ++ Q +++++E Sbjct: 574 PLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEE 619 >gi|313675045|ref|YP_004053041.1| DNA primase [Marivirga tractuosa DSM 4126] gi|312941743|gb|ADR20933.1| DNA primase [Marivirga tractuosa DSM 4126] Length = 640 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 171/653 (26%), Positives = 286/653 (43%), Gaps = 42/653 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M I+++ I ++G YV ++ N WACCPFHDEKTPSF +KG Sbjct: 1 MGLSPKTIQEVQDRAEIEEVVGDYVPLKKKGQN-----MWACCPFHDEKTPSFSVAPNKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 Y CF C GD + F+ L G +F E++++LA G+ + P+ ++ + L Sbjct: 56 IYKCFGCGKAGDSIQFIMDLEGLNFPEAIRQLADKYGIEIEETESSPEQQEAYNERESLY 115 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ A ++F L N + + Y ERG IE F LG+ D L + + Sbjct: 116 IVLNFAAEYFKDLLHNHPEGKSIGLSYFKERGFSHATIEEFDLGFTLDQWDGLIKAAKAA 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 G SEE + +AGL+I +YDRFRNR+IFPI S G+ IAFG R L + KY+N Sbjct: 176 GHSEELLEKAGLIIK--KEDKTYDRFRNRVIFPIHSISGKPIAFGARILINDKKQPKYIN 233 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET ++HK + LY A ++ LVEGY DV+SL Q+GV+NVV Sbjct: 234 SPETDVYHKSEVLYGIAQAKKSIR----------DEENCYLVEGYTDVISLHQSGVENVV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GT+LT Q++L+ + + + + FDGD GL+AA + IDL L G V V+ Sbjct: 284 ASSGTSLTTQQIKLIGRYAQNVTVLFDGDAAGLKAAMRGIDL---ILEGGLNVKVVIFPD 340 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDS+ + G AF+ + E+ + P ++AE + I+ I Sbjct: 341 GEDPDSYSQKMGDEAFKSFLKENAKDFIRFKSDLLLEETKQDPIKKAETIQDIVRSISKI 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D R Y + D L+ I E + K++ ++ + S + Sbjct: 401 PDPVKRAIYIKECSDILEIDEALLIAEQNKVVLREKESKGDITKRQANYLSESFSQAPEQ 460 Query: 476 LSKKP------SLREAALLLTLINHPAI--------LQEQYQELADIRYDNNELQKLWSF 521 + K+ +L+E + L+ + + + QEL+D + + ++ Sbjct: 461 IQKQYTPFDVAALQERESIRLLLTYAELPLADDKLVIDYLLQELSDTDFIHPVYAEILED 520 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 S + + E + + + W E R + Sbjct: 521 FVSHLKDGTILNESHFIKNGSEEVRKVIFSLYTDRYELSENWEKKFEIYTPHERHILNDS 580 Query: 582 LA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + L + R + ++ +++ ++ + + + L++ ++I + Sbjct: 581 IYIHVLRLKHRSILHLIDKNTEKLKDSVSQEDEQIILQYLMQLNQAKMEIGNL 633 >gi|322831340|ref|YP_004211367.1| DNA primase [Rahnella sp. Y9602] gi|321166541|gb|ADW72240.1| DNA primase [Rahnella sp. Y9602] Length = 582 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 178/628 (28%), Positives = 296/628 (47%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARIDIVDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAVDFLMNYDRLEFVESIEELATMQGLEVPYEAGTGPSQMERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ ++F+ SLK A YL RG+ I F +G+AP + + + Sbjct: 119 LMAPLSEFYQQSLKQAAGAPAREYLARRGLSEDVISHFAIGFAPPGWDNALKRFGKNADD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ +++ SYDRFR R++FPIR RG+VIAFGGR L + KYLNSPET Sbjct: 179 KASLIDAGMLV-TNDNGRSYDRFRERVMFPIRDKRGRVIAFGGRVL-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A ++ + + +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEA----------QLKHPTPARLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++L+++ + IV C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLMFRSTDNIVCCYDGDRAGREAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ + +++PL L+ ++PD R +L + I + + Sbjct: 347 DTLVRKEGKEAFEQRMEQAMPLSTFLFDSLLPQVDLSSPDGRTKLSMLALPLIRQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + ++L L + + + K + Sbjct: 407 LRMYLRQQLGNKLGILDDSQLEKLMPKQAESSNVYQAPQLKRTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + L L+S L + + Q ++ + Sbjct: 452 -----RILIGLLVQNPQLATLIPSLQGLEQAKQPGLD-LFSELVTTCLAQPGLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + F + L+ L + D+ + +A +L ++ E + Sbjct: 506 LYRDNKFYQQLETLATW----------NHMIVEDMVEEEFRATLASLYDSILEQRLETL- 554 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 IA+ G + + +S L++V + Sbjct: 555 --IAKARTHGLSPEERTEVSSLNQVLAR 580 >gi|312140268|ref|YP_004007604.1| DNA primase dnag [Rhodococcus equi 103S] gi|325676985|ref|ZP_08156656.1| DNA primase [Rhodococcus equi ATCC 33707] gi|311889607|emb|CBH48924.1| DNA primase DnaG [Rhodococcus equi 103S] gi|325552147|gb|EGD21838.1| DNA primase [Rhodococcus equi ATCC 33707] Length = 643 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 143/662 (21%), Positives = 249/662 (37%), Gaps = 44/662 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 5 RIPDRDIAAVRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF C GD SFL + SF+E+V++LA G + P +++ + L+ Sbjct: 61 FHCFGCGEGGDVYSFLQKIEHVSFVEAVEQLADRIGYQISYEGGGPSVQRDRGTRARLVA 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ LK + YL ER D+ A F GYAPD +L +HL KGF Sbjct: 121 ANAAAQEFYAARLKEPDAQAARDYLTERNFDAAAAAQFGCGYAPDGWDTLTKHLMAKGFE 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL + DRF RL++PIR+ G VI FG R L +++ KY+N+P Sbjct: 181 AKELEAAGLSKE--GRRGPIDRFHRRLLWPIRNLAGDVIGFGARKLFDDDTMPGKYVNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ETIL+ K L+ A + K ++VEGY DV+++ AGV+ V+S Sbjct: 239 ETILYKKSNVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAS 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353 GTA + L +L +L + ++ + Sbjct: 289 CGTAFGDEHLAMLRRLLMDDSYFRGEVIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAIA 348 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP + G A L+ P+ + + K +T + R E + Sbjct: 349 PDGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSLLAEHDLDTAEGRVEALRRTVPVVA 408 Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---- 468 IK+ LR Y+ + + R + + K Q Sbjct: 409 RIKEPTLRDGYAVQLSGWVGWDDIPAVRRRVRDEARKFARGGGAPAAKRRPVDPAQVEAF 468 Query: 469 ----SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + + + + L + +PAI + L + + + + + Sbjct: 469 PAPAPGIARPRPNDPALWPQRDALKAALQYPAIAGTVFDSLPPESFTHPAYAAVREAVAA 528 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + + + ++ L DV Y + + Sbjct: 529 AGGTSAGLGGAEWVDAVGRAAGEGTVHSIVMELAVDPLP------TDEDVAPRYIRGVLA 582 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 + + Q E++ ++ +++ ++++ L+ L + + Q A+ G Sbjct: 583 RLQEVWVGEQVAELKSKLQRISPTTDSDEFHSLLGDLVALEQYRRSLLDQ-AI----GDT 637 Query: 645 SG 646 SG Sbjct: 638 SG 639 >gi|318058873|ref|ZP_07977596.1| DNA primase [Streptomyces sp. SA3_actG] gi|318081200|ref|ZP_07988532.1| DNA primase [Streptomyces sp. SA3_actF] Length = 628 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 143/652 (21%), Positives = 264/652 (40%), Gaps = 54/652 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + +PI +++ +Y+ G+ CPFHDEK+PSF + +KG ++CF C Sbjct: 4 VRDAVPIDSVVAEYLQLKNAG----GGNLKGLCPFHDEKSPSFQVSPAKGLFHCFGCQEG 59 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFF 128 GD ++F+ + SF E+V+RLA AG+ L + ++ + LI A ++ Sbjct: 60 GDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTQQRGERIRLIDAHRAAAKYY 119 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + +L ERG D A F +GY+P L +LR +GF++ ++I +GL Sbjct: 120 EEQLAGPEAEIGRKFLAERGFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFTDRELITSGL 179 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKN 247 DRFR RL++PI+ G ++ FG R L + ++ KYLN+PET ++ K + Sbjct: 180 -SQESRGGRPIDRFRGRLMWPIKDIGGDIVGFGARRLREDDNGPKYLNTPETPVYRKSQV 238 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY A + ++ R ++VEGY DV++ +GV V++ GTA + Sbjct: 239 LYGIDLAKKDIARASRA----------VVVEGYTDVMACHLSGVTTAVATCGTAFGTEHI 288 Query: 308 RLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 ++L +L R++ FDGD G +AA +A + + DP Sbjct: 289 KILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIAPDNMDPCDL 345 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 G+ A +L+ +PL + ++ TP RA + +K+ LR+ Sbjct: 346 RLAKGEQAVAELVEPRVPLFEFALRQIVSRYDLETPAGRAAALDEAAPVVASVKNVALRH 405 Query: 423 YYSQAIRDRLQ------QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + L Q + + + + R + + P+ + G Sbjct: 406 AVAVQLAGMLGYGPMDQQEVVRRVATVARWAREHRGEPLPGGPRRPATATSGAPQRPGNS 465 Query: 477 SKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 LR E LL + P ++ + + + + ++ Sbjct: 466 GPALILRNPAHMTERELLKLALQRPELVSPAFDAYEIDEFTAEPYAAVRQAIADAGGAEE 525 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-- 588 L + D + + TE + +R+ + ++ Sbjct: 526 GVHDAM-----------AYLTAVREAAPDDRVRAMVTELAVEPIRRRVVDEIYASEQLVR 574 Query: 589 ---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 R + R+ E++ +V+A+G+ + A + S L + ++ Q A Sbjct: 575 VRVRAVQRRVTELQGTFTRVSAQGDQARAAEVQSELWVLEQYGRALQQQGAA 626 >gi|218889318|ref|YP_002438182.1| DNA primase [Pseudomonas aeruginosa LESB58] gi|218769541|emb|CAW25301.1| DNA primase [Pseudomonas aeruginosa LESB58] Length = 664 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 183/678 (26%), Positives = 297/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQ-----------------------------------------QLF 436 LR Q + + +L Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGALDGDDYLAASAYYENELS 468 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GYG + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKTPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|322421612|ref|YP_004200835.1| DNA primase [Geobacter sp. M18] gi|320127999|gb|ADW15559.1| DNA primase [Geobacter sp. M18] Length = 585 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 148/635 (23%), Positives = 281/635 (44%), Gaps = 55/635 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P + ++++ PI ++ Y+ + N Y CPFH EKT SF+ N ++ Sbjct: 1 MSMIPDEKVREVRERAPILQVVSDYMSLKKSGAN-----YQGVCPFHGEKTASFNVNPAR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDL 117 G ++CF C V G+ + F+ + G SF ++V+ LA GV +P + ++K Q Sbjct: 56 GIFHCFGCGVGGNAVDFVMRMEGISFPQAVKFLAKKVGVEIPERPLTREEKRKVDEQDQA 115 Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ E+A +F+ L++ YL++RG+D +++G+AP +L +LR+K Sbjct: 116 YQINELACEFYRRVLESDEAGAAGRAYLEKRGVDRDTAATYRMGFAPAGWGNLTSYLRRK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G + + + GLL + YD FRNRL+F I G+ I FGGR + KY+NS Sbjct: 176 GIPLDAVEKLGLLRKREGKDGYYDTFRNRLLFTIADLHGRAIGFGGRVM-DDSLPKYINS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+I++ K + L+ A ++ I+VEGY D L+L +AG NVV+ Sbjct: 235 PESIVYRKSEVLFGVDLAKKGMR----------EKGSAIVVEGYFDHLALYRAGFTNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + GTALT+ ++LL + + R + FDGD+ G +A ++++L L V + G Sbjct: 285 TCGTALTQPHVKLLRRYADRAYMLFDGDEAGRKATVRSMEL---FLEEAFPARVVEVPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD+FI G AF+ L+ ++LP+ + ++ ++ + + + + I Sbjct: 342 DDPDTFINREGGVAFQPLLDKALPIFESFYRGILKSLDVRGVEGKVAFVNEVSPRLQKIA 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D R Y + I + + + R + + + Sbjct: 402 DPVERGLYEKEICRAVGIDRAMLLRKVGIPAREQGPRPQPKGAPKQTGT----------- 450 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL ++ +P ++ AD + KL + + E LP Sbjct: 451 -------EEVLLTLMVKYPEVVLRVRDHGADKLFS-ASHLKLVQAILAQSEEGDLDLPLV 502 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + E ++ + + R L+ +D + ++Q +R R L + Sbjct: 503 L----------EQIESHEERSRLYSLFVEDAHLEDLDPVKAFEQCCQALER-RALKGDGK 551 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + +++ ++ + +++ L + + ++ Sbjct: 552 ALAREL--AMVDPDSPRYLEVLAELERLRNKKSKL 584 >gi|313111778|ref|ZP_07797571.1| putative DNA primase [Pseudomonas aeruginosa 39016] gi|310884073|gb|EFQ42667.1| putative DNA primase [Pseudomonas aeruginosa 39016] Length = 664 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGTLDGDDYFAASAYYENEPS 468 Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GYG + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|315604743|ref|ZP_07879806.1| DNA primase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313755|gb|EFU61809.1| DNA primase [Actinomyces sp. oral taxon 180 str. F0310] Length = 656 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 151/668 (22%), Positives = 259/668 (38%), Gaps = 63/668 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + + I +IG++V G CPFHDE+TPSF+ G Y Sbjct: 5 IRKDDIEAVRNALKIDEIIGEHVALKPAG----IGSLKGLCPFHDERTPSFNVRPHLGMY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + F+E+V+ LAA AG+ L + + + + L+ Sbjct: 61 HCFGCGESGDVISFVQKIDHLPFMEAVEMLAAKAGITLHYEEGGARVRTEEPGKRQRLLD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA +F+ L + +L +RG F +GYAP S +L HLR KGF+ Sbjct: 121 AHRVAEEFYQAQLASPEAHAGRQFLADRGFSQSMCAHFGVGYAPASWDALTRHLRSKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSP 237 +++I AGL + YDRFR RL++PIR G + FG R L + +S KYLN+P Sbjct: 181 DQEIQIAGLASQ--GTRGIYDRFRGRLVWPIRDITGATVGFGARRLDESEKDSPKYLNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + R +++VEGY DV++ AGV N V++ Sbjct: 239 ETPIYKKSQLLYGLDLAKKSIATDHR----------VVIVEGYTDVMAAHVAGVTNAVAT 288 Query: 298 LGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLV 338 GTA +R++ + ++ FDGD G +AA +A Sbjct: 289 CGTAFGSEHVRIIRRLLGDHADPAAGVLLSSGRAHGSEVIFTFDGDSAGRKAALRAYGED 348 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G+DP G A L+ PL + + + Sbjct: 349 QNFAA---QTFVAVAPGGQDPCELRLSAGDQAVVDLVNSRTPLFEFAIRSVLAQMDLRSA 405 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARH 456 + R + + HIKD+ LR Y++A+ L + R + AR Sbjct: 406 EGRVQGLRASAGIVAHIKDRALRAEYTRALAGWLGMDMRSVEQAIRVAARTQASEHEARP 465 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNEL 515 + + + + E L ++ P A++ ++EL + Sbjct: 466 GAVEMAGAGRPAPNPERRGPEDPVTRVERQALEAVLQQPLAVVGSGFEELDGQSFTVPTH 525 Query: 516 QKLWSFL-----FSDFVE---------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + F + R + E + Sbjct: 526 RAVHDAIRAVGGLDAFTQMMRQAEAHFGPGENATAAASRHFVQVVLESAGEFIAPAVTQL 585 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + A D+R + +A R L+R+ E ++++ ++ + E + L Sbjct: 586 AVAPLPVAGEADLRSYCRGVVAAMVRM-DLTRKLGEARAHLSRM-SEEDPE-YSEAFRSL 642 Query: 622 HEVHIQIH 629 + + Sbjct: 643 MRLEQRRQ 650 >gi|107099563|ref|ZP_01363481.1| hypothetical protein PaerPA_01000576 [Pseudomonas aeruginosa PACS2] gi|116054305|ref|YP_788750.1| DNA primase [Pseudomonas aeruginosa UCBPP-PA14] gi|115589526|gb|ABJ15541.1| putative DNA primase [Pseudomonas aeruginosa UCBPP-PA14] Length = 664 Score = 364 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468 Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GYG + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|309811083|ref|ZP_07704881.1| DNA primase [Dermacoccus sp. Ellin185] gi|308435047|gb|EFP58881.1| DNA primase [Dermacoccus sp. Ellin185] Length = 661 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 161/674 (23%), Positives = 276/674 (40%), Gaps = 64/674 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + I +++ ++V R G CPFHDEKTPSF + G Y Sbjct: 5 IKAEDIAAVKDRVNIEDVVSEHVTLRRAGA----GSLKGLCPFHDEKTPSFTVRPAVGVY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 +CF C GD +SF+ SF ESV+RLAA AG+ L + + +E + L+ Sbjct: 61 HCFGCGQSGDVISFVMETEHLSFTESVERLAAKAGMVLRYEEGERPDREPPGRRMRLVET 120 Query: 121 IEVATDFF-HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA +F+ L++ + +L +G D A + F +G+AP + +L HLR KGFS Sbjct: 121 HRVAEEFYTEALLRDPSARAGRDFLRAKGFDGKAAQHFGVGFAPRTGDALTAHLRAKGFS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 E++ AGL+ G +S YDRFR R+++PIR G + FG R + + + + KYLN+ Sbjct: 181 PEEMTTAGLV--GQSSRGLYDRFRGRVVWPIRDITGDTVGFGARRIFEDDRIEAKYLNTS 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K LY A + + R ++VEGY DV++ AGV N V++ Sbjct: 239 ETPIYKKTHVLYGLDLAKKTIARERRA----------VVVEGYTDVMAAHLAGVDNAVAT 288 Query: 298 LGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 GTA ++ L ++ R++ FDGD G +AA KA D ++ Sbjct: 289 CGTAFGVDHIKSLRRIMRDEAGGTPARVIFTFDGDAAGQKAAMKAFDEDQRWA---SQSF 345 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G DP G A LI +++P+ + + + + R + Sbjct: 346 VAVAKDGMDPCDLRLRQGDEAVRGLIEDAVPMFEFAVRTTIAGFDLDHAEGRVAAMRAVA 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY-----------ITEHSGYGRYWKKNARHRD 458 I I+DQ LR Y + + + ++ ++E R A + Sbjct: 406 PIIAGIRDQTLRPEYVRTVAGWIGVEIEQLSAAVRTAPRGKLSERRPPRREGLPAASWQG 465 Query: 459 QKGPSQ----------------RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQ 501 + PS + S+ K E LL ++ +P L+ Sbjct: 466 SQQPSSGPGGGQREGQGVSEAAEPQRPSIPKPNPRDPSIAGERQLLQVMLQYPESLKGTV 525 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + +L + Q + + ++ + RG L + ++ Sbjct: 526 FDQLVPGDFSAPAHQLILAAAIGAGGPGSVASIGAWNEAVR-RGTDPQLHDVLNELVVRD 584 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILIS 619 L + EA + Y AL + LS + Q+ ++ G A+ + + Sbjct: 585 LPTKLDEAT-GRPDERYVAALIQNVQEGALSSAIADAMGQLRRLDPNAPGYADASRAASA 643 Query: 620 ILHEVHIQIHQIES 633 L ++ Q++ + Sbjct: 644 RLFQLQTQLNALRE 657 >gi|313123890|ref|YP_004034149.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280453|gb|ADQ61172.1| DNA primase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 612 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 151/640 (23%), Positives = 281/640 (43%), Gaps = 40/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI ++ + I ++I QYV ++R DY CPFH EKTPSF N K F Sbjct: 4 RISEDFINEVRGSVNIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFSVNPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +YCF CH G+ F+ +F ESV+R+A A +P+P + K L+++ Sbjct: 59 FYCFGCHKGGNVYKFIMEKEEVTFPESVERVAEFANIPMPQEYQEQPVKLNP---LMQMH 115 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+ L +R Y +RG+D ++ FK+GYAP L +LR +G+++ Sbjct: 116 KEAADFYQQVLMTTKIGERGLEYARKRGLDDDLLKHFKIGYAPGKSDLLLTYLRGEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 +++ E+GL + + +DRFR+RL+FP+ G +AF GR +S E KYLNSPET Sbjct: 176 DQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDENGHPVAFSGRRISDDPEEPKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K L++F A + +K ++L EG+MDV+S +AGV+ ++S+G Sbjct: 235 SIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ ++ +++ ++V+ +DGDDPG A +A+ L + V+L DP Sbjct: 285 TSLTQQQVYMIRRITKQVVINYDGDDPGQHATERAVGLFKQAGNFDLGI--VILPDKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG +++ I ++ D +R + + N E+ I + + Sbjct: 343 DEYVKQYGSDSYQAAIRGAISTTDFFLQRLKKKYNLNNEREQVAYLSEAVAEIAALPNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + S R ++ +H + + + + + Sbjct: 403 EQDLYVGRLAKETGVSLDALKVNLSRARRKQRRVDQHISSEVLPELAPLAPAADPQPVTR 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL I + + N E ++L + + Sbjct: 463 ALKAQQRLLYAYIYSDEARDYL--NVNGFVFPNPEYERLAKLWLNYIETHENVSLSGFLD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E + + + + ++ + + L L K + R Sbjct: 521 FIPEE---------LQSIIVSTDMTGLPGKITLEELEAQVRVLNLCKIDDEIDRHM---- 567 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + IA + + + + + ++ +++ +EA+ + Sbjct: 568 QAIADARRRNDQTAILLETQAI--LQLRQLKLQEEEAVSD 605 >gi|108800408|ref|YP_640605.1| DNA primase [Mycobacterium sp. MCS] gi|119869537|ref|YP_939489.1| DNA primase [Mycobacterium sp. KMS] gi|108770827|gb|ABG09549.1| DNA primase [Mycobacterium sp. MCS] gi|119695626|gb|ABL92699.1| DNA primase [Mycobacterium sp. KMS] Length = 640 Score = 364 bits (933), Expect = 4e-98, Method: Composition-based stats. Identities = 142/651 (21%), Positives = 255/651 (39%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I +++G YV R CPFHDEK+PSFH + G Sbjct: 4 RIPDRDIAAIRERVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C GD +F+ + SF+ESV+ LA G + + +++ ++ L+ Sbjct: 60 FHCFGCGEGGDVYAFVQKIEHVSFVESVELLADRIGYTVTYTGASNTNVQRDRGSRSRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ +L + YL ER D+ A F G+AP L +HL +KGF Sbjct: 120 AANAAAQEFYAEALTSDEAAPARQYLIERNFDAQAAARFGCGFAPSGWDKLTKHLLRKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +++ AGL + DRF RL++PIR++ G+VI FG R + + + KY+N+ Sbjct: 180 EFKELEAAGLARE--GKRGPMDRFHRRLLWPIRAAGGEVIGFGARRIFDDDQMEAKYVNT 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K L+ A + KS R ++VEGY DV+++ A V+ Sbjct: 238 PETVLYKKSAVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLANETTAVA 287 Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 S GTA E L LL + R L F D A + G V Sbjct: 288 SCGTAFGEGHLALLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409 + G DP G A L+ +P+ + + D + E Sbjct: 348 -AADGMDPCDLRLKSGDNALRDLVARRIPMFEFAIRSLIPAGDVLDNDPAAQVEALRRCV 406 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 ++ I+D LR Y++ + Q+ + E + G + R+ P+Q Sbjct: 407 PLVSRIRDYALRDEYARRLAGWTGWADEAQVLNRVREEAAKRGMPDRGRRRNGADAAPAQ 466 Query: 465 RLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + P+L + L + + +PA+ + LA + + + + + + Sbjct: 467 PRRAPDVAARPDPADPTLWPQREALKSALQYPALAGPVFDALAVDSFTHPGYRAVRTAIE 526 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + + E+ L ++ + + Y + Sbjct: 527 AAGGAAAGLSGAQWIEVVREQTASPQAANLVNELSVEAIRVEDDDKLP-----RYIGGVL 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 582 ARLQEVWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 632 >gi|254237207|ref|ZP_04930530.1| DNA primase [Pseudomonas aeruginosa C3719] gi|126169138|gb|EAZ54649.1| DNA primase [Pseudomonas aeruginosa C3719] Length = 664 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDTL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468 Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GYG + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|254243671|ref|ZP_04936993.1| DNA primase [Pseudomonas aeruginosa 2192] gi|126197049|gb|EAZ61112.1| DNA primase [Pseudomonas aeruginosa 2192] Length = 664 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 182/678 (26%), Positives = 296/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGALDGDDYFAASAYYENEPS 468 Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GYG + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYGEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKTPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|303238872|ref|ZP_07325403.1| DNA primase [Acetivibrio cellulolyticus CD2] gi|302593505|gb|EFL63222.1| DNA primase [Acetivibrio cellulolyticus CD2] Length = 595 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 168/631 (26%), Positives = 287/631 (45%), Gaps = 40/631 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 YP + I+++ ++ I +++G+YV +++ N Y+ CPFH EKTPSF +++K Sbjct: 4 KYPEELIEEIRMNNDILDVVGEYVKLEKKGKN-----YFGLCPFHREKTPSFSVDNTKQM 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120 Y+CF C G + F+ +IE+++ LA A + LP + + EKK ++ ++I++ Sbjct: 59 YHCFGCGKGGSVIQFVMDAENLDYIEAIKLLAEKARITLPEGESEEEKKRALKTQEIIKI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F++ L + ++ YL +R + I+ F LGY+ + L L+ K +S+ Sbjct: 119 NTDAARFYYEQLNDKKNLDARDYLQKRKVSEGVIKKFGLGYSSNEWNLLYSFLKSKNYSD 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +I +GL++ + +DRFR R++FPI RG VI FGGR L KY+NSPET+ Sbjct: 179 EDLISSGLILAKKSGDGYFDRFRGRVMFPIFDLRGNVIGFGGRVL-DDSLPKYMNSPETL 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +++K +NLY A N II+VEGYMDV+SL Q G+ N V+SLGT Sbjct: 238 VYNKRRNLYALNFAKNS------------GEKRIIVVEGYMDVISLYQFGIINTVASLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q R+L K + I++ +D D G A + ++L G V +L+ +G+DPD Sbjct: 286 ALTESQGRILKKYAEEIIISYDADTAGQAATMRGLNL---LDDIGCNVKVLLIPKGKDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G AF+KL+ +L LV+ K D + + ++ I + Sbjct: 343 EFIKANGADAFKKLVDNALSLVEYKIKVLKSQIDTTAIDGKISFLNKAADILSKIDNSVE 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + E R K K S ++ Sbjct: 403 QEMYIKKISQEYDISQESMFAEV--IKRVKPKGNYKPAIKIDSTKIKPVGNKTKSDENNL 460 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L L ++ ++ + + E +K +F+ ++K +P E+ Sbjct: 461 VHYERIILSLLSIDNSLYRKIEDRINLEFFTLEENRKAAEIIFTKIKDKKGIVPAELLNL 520 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + E N D + + + + L ++++EI Sbjct: 521 VSNESANNFASMIQG------------ECNFEDNLRAILDIIKKIEVIK-LDKRQKEILN 567 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I ++ G E L L + IQ + Sbjct: 568 MI---SSSGNKEDVDRLKEELKSILIQKKSM 595 >gi|302560772|ref|ZP_07313114.1| DNA primase [Streptomyces griseoflavus Tu4000] gi|302478390|gb|EFL41483.1| DNA primase [Streptomyces griseoflavus Tu4000] Length = 650 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 149/659 (22%), Positives = 268/659 (40%), Gaps = 46/659 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKIDHLSFSEAVERLAGQAGITLRYEEGGYNPTHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A +++ L + +L +RG D A F +GY+P L LR KGF Sbjct: 120 AHKIAAEWYAEQLATGPEAETGRAFLADRGFDQAAAVHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 S+++++ +GL + DRFR RL++PIR G V+ FG R L + KYLN+P Sbjct: 180 SDKELVLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYEADTGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 ETAIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ +TP RA + Sbjct: 345 APDGMDPCDLRLAKGDEAVSDLVQPRTPLYEFALRQIVRRYDLDTPAGRAAALDEAAPTV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465 IK+ ++ + + L L +++ + W + R +R Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARERGGRGPASDHRRQGGAPQQ 464 Query: 466 ----LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L E LL + P ++ + + + Sbjct: 465 YAAAPAAPRGPALNLRNPVFATERELLKLALQRPELVSPAFDAYGVDEFTAPPYAAVRQA 524 Query: 522 LFSD-FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E P+E R+ E + ++ + V + + + + V + Y Sbjct: 525 VLDAGGAEYGVQDPQEYLIRVREAAPDDAVRAM---VTELAVEAIMLHRGVKGVDEVYAG 581 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQEA 636 A + R R + R+ +I ++ ++ A G+ + + + + L + + + A Sbjct: 582 AQLVTVRRRAVERRIRDIAGRLTRLGAHGDPAELSSVQNELWVLQQYDQALREARRGRA 640 >gi|229825189|ref|ZP_04451258.1| hypothetical protein GCWU000182_00541 [Abiotrophia defectiva ATCC 49176] gi|229790561|gb|EEP26675.1| hypothetical protein GCWU000182_00541 [Abiotrophia defectiva ATCC 49176] Length = 589 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 160/634 (25%), Positives = 285/634 (44%), Gaps = 48/634 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I ++ I + I YV +R N Y CPFH+EKTPSF N K Sbjct: 1 MFYSEEIIDEVREKNDIVDTISPYVRLTKRGAN-----YVGLCPFHNEKTPSFSVNTDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 ++CF C V G+ +SF+ +F E+++++A AG+ LP +P+ K+ ++T L Sbjct: 56 IFHCFGCGVGGNSISFVMKYENLTFTEAIKQMADKAGINLPEEYDNPESVKRADLRTRLF 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A F++ L+ YL +RG+ I F LGY+ S +L +L+ KG+ Sbjct: 116 EIYKEAAKFYYFQLRGDYGDYPMTYLKDRGLTDKTINDFGLGYSVKSSNALYNYLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E +I+A L++ +D F NR+IFPI +VIAFGGR + +GE KYLNS E Sbjct: 176 SDELMIKAELVVFK-EGKGVFDMFWNRVIFPIMDQNSKVIAFGGRVMGEGEP-KYLNSKE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K +NLY A + S F++L EGYMDV++L QAG N V+SL Sbjct: 234 TDIFNKRRNLYGLNFAKHS------------RSPFMLLCEGYMDVIALHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q RL+ + +++ +D D G++AA +A+ + G R + L+ +D Sbjct: 282 GTALTEEQARLIARYVKEVIITYDSDGAGVKAALRALPI---LKSAGIRTKILKLAPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD I+ G FE+ I + + + + + P+ + E + + +++ Sbjct: 339 PDELIKAAGHEEFEERIKNAENSFNFELSNIEKGFNLSEPEGKTEFLNKVAERLTDFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A+ ++ + + G + +R+ ++ +++ L K Sbjct: 399 LERENYIAAVAEKYFVSKETLTKLVNKIGGAKEIRETYREAGERIKKNDRTNTADEGLLK 458 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 LL + + P ++ + + + +F E + EI Sbjct: 459 TN----RFLLSIIADKPEYYHRIKNIVSARDFATPLYKDVAGRIFGQIGEGRKPNVAEII 514 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R L+ + + DA + R+ + + + R L+ + + Sbjct: 515 SRYESGEDQALVAAVFEEKFDAEV--------DEKEREKAFKEIVIKVRRAGLAEEMK-- 564 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +A L + + + ++++++ Sbjct: 565 ------AADSNDA----KLFTEITKKQRELNKLD 588 >gi|312883926|ref|ZP_07743643.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368384|gb|EFP95919.1| DNA primase [Vibrio caribbenthicus ATCC BAA-2122] Length = 583 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 298/634 (47%), Gaps = 65/634 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DL+ + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLIARLDIVDIIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + F+ F+E+++ LA G+ +P + + + + Sbjct: 60 HCFGCGVHGNAIDFMMEYERLDFVEAIEELANTLGLDVPREQRAGTSFPSKQPQANSEQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L L+ + ++ LK + K YL ERG+ ++ F +GY D S+R++ Sbjct: 120 RNLYDLMASISHYYRDQLK--QSKAAIDYLKERGLSGPIVQKFGIGYIADEWDSIRKNFG 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q ++ ++ G+LI+ + YDRFR R++FPIR RG+VI FGGR L +G + KYL Sbjct: 178 QTPQLQDMLVSGGMLIENEKGNR-YDRFRGRIMFPIRDRRGRVIGFGGRVLGEG-TPKYL 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + + S I++VEGYMDV++L Q G+ Sbjct: 236 NSPETPIFHKGKELYGLYEVMQAHR----------EPSNILVVEGYMDVVALAQYGIDYS 285 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L L GN + F+ L Sbjct: 286 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKDAAWRALENALQFLKTGNTLKFLFLP 345 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCI 412 GEDPDSFIR +GK AFE+ I ES+PL L+ + N + + ++ L H I Sbjct: 346 DGEDPDSFIRQHGKEAFERKIAESIPLSRYLFDNLIDIHQLNLGSNEGKSALRAHASAMI 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 I D + + + +R + + P ++ + + Sbjct: 406 EKIPDPFFQELLDKLLDER---------------------TGFDNNLRKPRKKSVDVATQ 444 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K+ +RE ++ LI +P+ + + L L+ + ++ Sbjct: 445 PHTALKRTPMRE--VIALLIQNPSYAEMVPNLSSVAGLPVPGL-SLFIEVLEYCHKRPNI 501 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + + LL +L + + + + Q + Sbjct: 502 SSGQLLECWRDTRHEALLSRLAGWSIPVED-DNEQDIFLDSLDKILAQCV---------E 551 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E+++ + + + E+ L++++ ++ Sbjct: 552 KQIEDLQAK--ERSIGLSTEERRELLALMLDLKA 583 >gi|297571279|ref|YP_003697053.1| DNA primase [Arcanobacterium haemolyticum DSM 20595] gi|296931626|gb|ADH92434.1| DNA primase [Arcanobacterium haemolyticum DSM 20595] Length = 650 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 151/671 (22%), Positives = 264/671 (39%), Gaps = 64/671 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I D+ I +++G+YV G CPFHDEKTPSFH + Sbjct: 2 IKRSVIDDVREKTRIEDVVGEYVTLKTAG----VGSMKGLCPFHDEKTPSFHVRPHVNRW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-----IQTDL 117 +CF C GD +SF+ + +F+E+++ LA AGV + + +++E +T L Sbjct: 58 HCFGCGEGGDAISFIERIEHVTFVEAIELLARKAGVVIEYEENGNKREESGPRDVTRTRL 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 I VA +F+ L + L ERG I F++GY+PDS L LR++G Sbjct: 118 IDAHRVAEEFYVQQLATDAGEPARKMLAERGFSPDVIAEFRVGYSPDSWDGLLTELRRRG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236 FS+++I +GL + YDRFR R+++PIRS G I FG R L + + KYLN+ Sbjct: 178 FSDKEISASGLASQ--KTRGLYDRFRGRVMWPIRSITGDPIGFGARKLFESDQGPKYLNT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+++ K LY A + +S I++VEGY DV++ AGV+N V+ Sbjct: 236 PETMIYKKSGVLYGLDLAKKAI----------SSERAIVVVEGYTDVMAAHIAGVKNAVA 285 Query: 297 SLGTALTEYQLRLLWKLS-------------------PRIVLCFDGDDPGLRAAYKAIDL 337 + GTA ++++ +L ++ FDGD G +AA +A Sbjct: 286 TCGTAFGSEHVKIVRRLMGDSANPAAGVMMSNGRAFGGEVIFTFDGDAAGQKAALRAFQE 345 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 + + G DP G A LI PL + + + T Sbjct: 346 DQSFAA---QTFVAVSEGGMDPCELRMAGGDAAVRDLIARRRPLFEFAIRSLLDQLPLRT 402 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + RA + I+D+ L+ YS+ + L GR + Sbjct: 403 VEGRAAGLRAAAPIVAQIRDRVLQSEYSRQLAGWLGMDEALVRDSVRQAGRSARYAGPVE 462 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-QELADIRYDNNELQ 516 + P + + + + + E L ++ P + ++ + Q Sbjct: 463 PDEVPRPQPV--LEPRNLVRDPVARVERQALEVMLQLPGMAAAALADQIPSRTFRTPIHQ 520 Query: 517 KLWSFL------------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 ++ + F + R ++ Q D V++A Sbjct: 521 SVFDAISAAGGVSAYVVKFDQLSAAGMPQTDA-SNRASTWFVEQVENQADDLVKNAVRQF 579 Query: 565 ATTEANIVDVRQGY--QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 A D ++ + + + L + + Q ++ +++ ++ + L +L Sbjct: 580 AVEPLPENDEKEPWPYVRGIILSLIRQGIVHQIADLRREMR--MIDADSPRQNELFEMLM 637 Query: 623 EVHIQIHQIES 633 ++ + Sbjct: 638 KLEATRRAYDE 648 >gi|152976725|ref|YP_001376242.1| DNA primase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025477|gb|ABS23247.1| DNA primase [Bacillus cytotoxicus NVH 391-98] Length = 598 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 155/631 (24%), Positives = 273/631 (43%), Gaps = 40/631 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 ++CF C G+ SFL + G SF E+VQ+L + + E+++ ++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLSFTEAVQKLGERNHIAVADYTSGKEQQDNISDDNVIML 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPDWDAAAKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLL+ + + YDRFR R++FPI + +G+V AF GR L ++ KYLNSP Sbjct: 179 FSLMTMEQAGLLVRSEKDGSHYDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L G +V +L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGQEATMKAGQL---LTQVGCQVKVTVLPEKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG AFE L+ S+ V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTKAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + +++ Y + K + Q +++Q+ + Sbjct: 405 AMQAESYLKSLSQEFAYSMETLLSQLHQYRKEQKIQQKQAKQISKPSQIVQTKPKRSGF- 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + E + + L++ + + Sbjct: 464 ---ERAERELIYHMLQSAEVAVRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + S N + + L KR + ++ E Sbjct: 519 LNWLSDEKLKNIVTNI----------STDEFINPEYTDEILEGHLEALKRHKEKLKKMET 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 I + Q+ E + L + Sbjct: 569 I-FTVKQMEKADPLEAAKFYAAYLQNQKARR 598 >gi|88704607|ref|ZP_01102320.1| DNA primase [Congregibacter litoralis KT71] gi|88700928|gb|EAQ98034.1| DNA primase [Congregibacter litoralis KT71] Length = 669 Score = 363 bits (932), Expect = 5e-98, Method: Composition-based stats. Identities = 173/689 (25%), Positives = 279/689 (40%), Gaps = 92/689 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I ++I + V + N + A CPFHDEK+PSF N K F Sbjct: 4 RIPQSFIDDLLDRVDIVDVIDRRVKLKKTGKN-----FSARCPFHDEKSPSFSVNPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 YYCF C G+ L F+ F ++V+ LA G+ + + + + + E L Sbjct: 59 YYCFGCGAGGNALGFIMDYENIDFPQAVENLATGVGLEVVREESRGQGASPQGESPNKPL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E + F+ +L+ +++ + RG+ F LG AP +L +HL Sbjct: 119 YELMERSAAFYKDALRTHENRQPAVEYLKNRGLTGVVARDFGLGLAPAGWDNLLKHLGDD 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + I AG+L+ D YDRFR+R++FPIR RG+VIAFGGR L + KYLNS Sbjct: 179 EQTLSRAITAGMLVKNDKG-RVYDRFRDRIVFPIRDRRGRVIAFGGRVL-GDDKPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +FHKG+ LY + A +K R II+VEGYMDV++L QAG+ V+ Sbjct: 237 PESPIFHKGRELYGLYEARRANRKLDR----------IIVVEGYMDVIALAQAGISYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA + L ++++ P +V CFDGD+ G +AA +A+ L + G + F+ L G Sbjct: 287 TLGTATSTEHLERIFRVVPEVVFCFDGDEAGRKAAERALHNTLPTMADGRQARFLFLREG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDS +R G AF L+ ++PL + L++ + T + RA L I + Sbjct: 347 EDPDSLVRKDGTQAFLDLVHAAVPLEEFLFQSQANGLDIGTMEGRASLSKRALPLIRILP 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEH--------------------------------- 443 + R Q++ +R + Sbjct: 407 EGVYRELMFQSLAERTGLELASLMKLELPPPEPPPAPEKARHGGASDSGFGSSANSYPDH 466 Query: 444 -----------------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 SG D + + + + + A Sbjct: 467 HLPQYSDEFADNYPDIDSGDYYASMDGGPPPDAGAWAPSDDEPTPRQRAPLGQAPRAHAT 526 Query: 487 L----LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L + L++ PA+ +L + ++ + Sbjct: 527 LTQAAIALLLHKPAVAALADAHALSALEGRE--GELLKAIIELLQKRPESSTGMLLGHWH 584 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE----I 598 GELL +L Q R D + Q + L ++ E + Sbjct: 585 GSSEGELLAELAGQERLI----------PTDGIEAQFQDIIRRLTLLPLRQRIMEEISGL 634 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + + LI L ++ + Sbjct: 635 KSRPYAQLTADDKARLPELIRALRDLDTR 663 >gi|257068853|ref|YP_003155108.1| DNA primase [Brachybacterium faecium DSM 4810] gi|256559671|gb|ACU85518.1| DNA primase [Brachybacterium faecium DSM 4810] Length = 658 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 144/676 (21%), Positives = 259/676 (38%), Gaps = 69/676 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + + + ++ ++V G CPFHDEKTPSF+ G + Sbjct: 6 IRRSDVDLVRERARLDEVVSEHVTLRTAG----IGSMKGLCPFHDEKTPSFNIRPQLGHW 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118 +CF C GD +SF+ + SF+E+V+ LA GV L D + + + L+ Sbjct: 62 HCFGCGEGGDVISFVQKINHLSFVEAVEMLAGRYGVQLQYEDAGQGRGNRPDFGTRRRLL 121 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +A +++ L + +L ERG D A F +G+AP+ SL LR +GF Sbjct: 122 DAHAIAEEYYREQLGTPAAEVGRRFLTERGFDQDAAAHFGVGFAPEGWDSLTGVLRSRGF 181 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-RTLSKGESVKYLNSP 237 +E ++ +GL+ G YDRFR RL++PIR G I FG R L + KYLN+P Sbjct: 182 TEAELTASGLVSQGQR--GVYDRFRGRLVWPIRDITGNTIGFGARRLLDSDQGPKYLNTP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++HK LY A + R +++VEGY DV++ AGV V+S Sbjct: 240 ETAIYHKSSVLYGLDIARKAISSQHR----------VVVVEGYTDVMAAHLAGVTTAVAS 289 Query: 298 LGTALTEYQLRLLWKLS-------------------PRIVLCFDGDDPGLRAAYKAIDLV 338 GTA ++++ ++ +V FDGD G +AA +A + Sbjct: 290 CGTAFGAEHVKIVRRVMGDSNPSAGLRLNTDGRGLAGEVVFTFDGDAAGQKAALRAFEED 349 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + + + G DP G A LI PL + + +T Sbjct: 350 QRFVA---QTYVAVEASGMDPCELRIAQGDQAVRDLIETRRPLFEFAIRTAISQVDLDTV 406 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 + + + I+D+ +R Y++ + L + R + + Sbjct: 407 EGQVTALRMAAPVVARIRDRAMRPEYARRLSGWLGMDEATVLRAVHDAARSQGRAPQPAT 466 Query: 459 QKG----------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL-QEQ 501 + E L ++ P +L E+ Sbjct: 467 PARTVAEGQGGAGQGSSAEDAPIPSARLADVVSPRDPVGQVETQSLAVMLQSPQLLEDEK 526 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 L D + LQ +W + + L + + RL + E + ++ + Sbjct: 527 VASLPDDAFHVPALQGVWDVMLAAGT-----LLDAVQGRLHAARYLEQVLEIAGETVRPL 581 Query: 562 LWSATT---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + A + + +L ++R+ +++++ + +AE+ ++ Sbjct: 582 IVEIANLDLPARDEEGLRRLAHSLLDRLTELSITREYSVLKQRLQRTDPS-DAERYQDIM 640 Query: 619 SILHEVHIQIHQIESQ 634 + L +V + + + Sbjct: 641 ARLAQVQGRRRALRAS 656 >gi|303230700|ref|ZP_07317447.1| DNA primase [Veillonella atypica ACS-049-V-Sch6] gi|302514460|gb|EFL56455.1| DNA primase [Veillonella atypica ACS-049-V-Sch6] Length = 585 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 176/631 (27%), Positives = 297/631 (47%), Gaps = 56/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V ++ N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVVSEHVTLKKKGKN-----YWGCCPFHNEKTPSFSVAPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L G +F+E+++RLA A +PLP P++ +E+ + L Sbjct: 60 YCFGCHASGNAIKFLMELEGITFVEALERLANRANIPLPEAKLSPQVRAREERRKKLYEA 119 Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A +FFH+ LK + K YL +RG+ IE F+LG+APD L + R++G Sbjct: 120 CDLAANFFHNCLLKTSYGKAGLEYLKKRGLTDETIEKFRLGFAPDGWDRLYKAFRERGIE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E ++E L I ++ +YD FRNR++FPI +G+V+ FGGR + + KYLNSPE Sbjct: 180 ESILLELNL-IRKNDKGQAYDFFRNRVMFPIMDGKGRVVGFGGRVM-DDSTPKYLNSPEC 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 QIFEKGKILFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNKGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ +L + + I+L +D D G +A +AI+L +V + + +DP Sbjct: 288 TAYTKDHGHILMRQADEIILAYDMDGAGRQAVTRAIEL---LQNTDFKVRVLAMPDDKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGKAFKELVEKAVKPLDYLLSESLIKHDTNDAEGKQAVMQDIFPYIANIHSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R D L+ L ++S RY++ + + + +++ Q + Sbjct: 405 IRD-------DALKALALPLWLDNSTIFRYFRNYTQKGNIELVDEKITQPKKIVSGD--- 454 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L+ +I LQE Q L + N + + + +++ F + + PE + Sbjct: 455 ----EELLMAHVITDSRALQEVVQYLPLEDFQNIQYRGIIEKIYTLFTQTGQYQPESVED 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + E+ +L + + L R L Q + Sbjct: 511 VLTPQEY-EIFSRLMIIEANEAVP-----------------VLIRKIRLHSLREQYKMHS 552 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 553 ILADQLKRAGDSTFISEL-HKCQEIQNLIRE 582 >gi|319400898|gb|EFV89117.1| DNA primase [Staphylococcus epidermidis FRI909] Length = 598 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 283/635 (44%), Gaps = 41/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L + + + K + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL ERG I+ ++GYAPD+ + + L +K Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + T +DRFRNR++FP+++ +G+++ + GRT + KYLNS Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTNQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A +++K IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ + L FDGD G A I L G V V L G Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEAT---IKTGQALLNQGLNVFVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR Y F K + + + + +N + + ++ + Sbjct: 342 MDPDDYIRKYDNEQFIKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R Q I D + + E ++ + + Q + Sbjct: 402 SGIIRNKLIQNIADIFKVSPETIQYELDATYQHQMPS----NTYPTFQDEPSKQQLILGR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E AL+ L+ YQ++ + N+ L++++S+L+ + + Y+ + Sbjct: 458 LTKNEKAERALIKHLMKDKDTFLNYYQKVVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E+L +LD+ + + + + Y Q + L Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ + + G++E + ++ V+ +++ Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598 >gi|320010941|gb|ADW05791.1| DNA primase [Streptomyces flavogriseus ATCC 33331] Length = 635 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 145/655 (22%), Positives = 259/655 (39%), Gaps = 44/655 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLTFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A DF+ L + +L ERG D A F +GY+P L +LR KGFS Sbjct: 120 AHKIAADFYREQLNGPEAEIGRRFLAERGFDQDAAAHFGVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +G I D DRFR RL++PI + G ++ FG R L ++ KYLN+PE Sbjct: 180 DKELISSG--ISQDGRRGPIDRFRGRLMWPISDTSGDIVGFGARRLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TSIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP G A L+ PL + ++ TP RA + Sbjct: 345 PDNMDPCDLRLAKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-------- 465 IK ++ + + + L Q+++ W + R Sbjct: 405 KIKTSSVQREVAVQLAGFVGILDQEFVVHRVNQLAQWARGRGERGPAPGKPSRGGAPQHQ 464 Query: 466 ---LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 L E LL + PA++ + + + + Sbjct: 465 IQAPTAPPGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGIDEFTAPPYAAVRQCI 524 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + E L + + + V + + ++ + + Y Sbjct: 525 AEAGGAEMGV--AETRDYLVQVLDATPDDTVRKLVTELAVEVFHGKS----IDETYAGEH 578 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + R R + R+ ++++ +A++ + + A + + + + S A Sbjct: 579 LVKVRLRAVDRRIDDVQSSLARLGSNVAPDHLAAAQNEVWVLQQYAQSLRSHGAA 633 >gi|251810979|ref|ZP_04825452.1| DNA primase [Staphylococcus epidermidis BCM-HMP0060] gi|251805489|gb|EES58146.1| DNA primase [Staphylococcus epidermidis BCM-HMP0060] Length = 598 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 282/635 (44%), Gaps = 41/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L + + + K + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL ERG I+ ++GYAPD+ + + L++K Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLKKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + T +DRFRNR++FP+++ +G+++ + GRT + KYLNS Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A +++K IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ + L FDGD G A K L G V V L G Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR Y F K + + + + +N + + ++ + Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R Q I D + + E ++ + Q + Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E AL+ L YQ++ + N+ L++++S+L+ + + Y+ + Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E+L +LD+ + + + + Y Q + L Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ + + G++E + ++ V+ +++ Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598 >gi|242242834|ref|ZP_04797279.1| DNA primase [Staphylococcus epidermidis W23144] gi|242233735|gb|EES36047.1| DNA primase [Staphylococcus epidermidis W23144] Length = 598 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 283/635 (44%), Gaps = 41/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L + + + K + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL ERG I+ ++GYAPD+ + + L +K Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + T +DRFRNR++FP+++ +G+++ + GRT + KYLNS Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTNQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A +++K IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ + L FDGD G A I L G V V L G Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEAT---IKTGQALLNQGLNVFVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR Y F K + + + + +N + + ++ + Sbjct: 342 MDPDDYIRKYDNEQFIKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R Q I D + + E ++ + + Q + Sbjct: 402 SSIIRNKLIQNIADIFKVSPETIQYELDATYQHQMPS----NTYPTFQDEPSKQQLILGR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E AL+ L+ YQ++ + N+ L++++S+L+ + + Y+ + Sbjct: 458 LTKNEKAERALIKHLMKDKDTFLNYYQKVVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E+L +LD+ + + + + Y Q + L Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ + + G++E + ++ V+ +++ Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598 >gi|292490205|ref|YP_003525644.1| DNA primase [Nitrosococcus halophilus Nc4] gi|291578800|gb|ADE13257.1| DNA primase [Nitrosococcus halophilus Nc4] Length = 571 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 172/621 (27%), Positives = 269/621 (43%), Gaps = 57/621 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +P++FI +L+ I LI + + +Y ACCPFH+EKTPSF + K F Sbjct: 4 RFPQEFIDELVARTDIVELIDSRIPLRKAGR-----EYVACCPFHNEKTPSFTVSPQKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C V G + FL A SFIE+V+ LA G+ +P + L ++ Sbjct: 59 YHCFGCGVHGTVIGFLIAFDRLSFIEAVEELAQRVGMTIPQGSDSAHR--NHHQGLYEVL 116 Query: 122 EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +F+ LK R+ YL RG+ I F LG+AP +L H S Sbjct: 117 SYTAEFYQQQLKTGTHQGRVKAYLQGRGLSHPIITEFGLGFAPSRWDALLRHTPLPLRSR 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + YDRFR+R++FPI RG+V+ FGGR L +G KYLNSPET Sbjct: 177 LQTAGLVVDK---GDGRCYDRFRDRVMFPIHDYRGRVVGFGGRLLGEGSP-KYLNSPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + ++ R +++VEGYMDVL+L + ++ V++LGT Sbjct: 233 LFHKGRELYGLYQVRQSVRHCDR----------LLVVEGYMDVLALAEHNIRYAVATLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L L++++P +V CFDGD G RAA++A++ L L G +V F+ L +GEDPD Sbjct: 283 ATTPDHLTRLFRMTPVVVFCFDGDRAGYRAAWRALETALPLLSQGRQVQFMFLPQGEDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G+ AFE + ++ PL D L + + D RA L + ++ I Sbjct: 343 TVVRAEGQAAFEARLEKATPLSDFLLSSLQRKVNLGSMDGRARLVELARPLVSKIPPGVY 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + Q+ Q +T H G+ + + +L + Sbjct: 403 RDMLLARLAE-VAQVEQAALTRHLDQGKS------------------PPVVPRQRLERGM 443 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + L+ P ++Q + + D + L + + +R Sbjct: 444 APLARKAVAILLQRPNLIQSVDESFSLRGLDGRGAKL-LQELIELLQSSPHLSTAALLER 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + G L+QL L L R L Q E Sbjct: 503 WRDSEMGRYLEQLASWELFLTDEDMG---------------LELQAALRRLQAQAAEQRM 547 Query: 601 QIAQVTAKGEAEKTAILISIL 621 + A + L+++L Sbjct: 548 TMLSNQPSLTAAERQELLALL 568 >gi|126436031|ref|YP_001071722.1| DNA primase [Mycobacterium sp. JLS] gi|126235831|gb|ABN99231.1| DNA primase [Mycobacterium sp. JLS] Length = 640 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 141/651 (21%), Positives = 254/651 (39%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I +++G YV R CPFHDEK+PSFH + G Sbjct: 4 RIPDRDIAAIRERVRIEDVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C GD +F+ + SF+ESV+ LA G + + +++ ++ L+ Sbjct: 60 FHCFGCGEGGDVYAFVQKIEHVSFVESVELLADRIGYTVTYTGASNTNVQRDRGSRSRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ +L + YL ER D+ A F G+AP L +HL +KGF Sbjct: 120 AANAAAQEFYAEALTSDEAAPARQYLIERNFDAQAAARFGCGFAPSGWDKLTKHLLRKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +++ AGL + DRF RL++PIR++ G+VI FG R + + + KY+N+ Sbjct: 180 EFKELEAAGLSRE--GKRGPMDRFHRRLLWPIRAAGGEVIGFGARRIFDDDQMEAKYVNT 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K L+ A + KS R ++VEGY DV+++ A V+ Sbjct: 238 PETVLYKKSAVLFGLDLAKRDIAKSHRA----------VVVEGYTDVMAMHLANETTAVA 287 Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 S GTA E L LL + R L F D A + G V Sbjct: 288 SCGTAFGEGHLALLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409 + G DP G A L+ +P+ + + D + E Sbjct: 348 -AADGMDPCDLRLKSGDNALRDLVARRIPMFEFAIRSLIPAGDVLDNDPAAQVEALRRCV 406 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 ++ I+D LR Y++ + Q+ + E + G + R+ P+Q Sbjct: 407 PLVSRIRDYALRDEYARRLAGWTGWADEAQVLNRVREEAAKRGMPDRGRRRNGADAAPAQ 466 Query: 465 RLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + P+L + L + + +PA+ + L + + + + + + Sbjct: 467 PRRAPDVAARPDPADPTLWPQREALKSALQYPALAGPVFDALTVDSFTHPGYRAVRTAIE 526 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + + E+ L ++ + + Y + Sbjct: 527 AAGGAAAGLSGAQWIEVVREQTASPQAANLVNELSVEAIRVEDDDKLP-----RYIGGVL 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 582 ARLQEVWVGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 632 >gi|163942051|ref|YP_001646935.1| DNA primase [Bacillus weihenstephanensis KBAB4] gi|229135119|ref|ZP_04263921.1| DNA primase [Bacillus cereus BDRD-ST196] gi|229169043|ref|ZP_04296759.1| DNA primase [Bacillus cereus AH621] gi|163864248|gb|ABY45307.1| DNA primase [Bacillus weihenstephanensis KBAB4] gi|228614452|gb|EEK71561.1| DNA primase [Bacillus cereus AH621] gi|228648348|gb|EEL04381.1| DNA primase [Bacillus cereus BDRD-ST196] Length = 600 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116 ++CF C G+ SFL + G +F E+VQ+L G+ + ++++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQQQEDISDDTVI 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + E+ ++HH L YL +RGI IE F++GYA + + + L++ Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S + +AGLL+ + + YDRFR R++FPI + +G+VIAF GR L ++ KYLN Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K K LYNF A +++K ++L EGY DVL+ ++GV+ V Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG TAFE L+ S+ V ++ + E + ++ + Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLL 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +D Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E ++ ++ + + + E + + L++ + + Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + ++ + + E ++ + AL + L + Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 EI ++ Q+ E ++ L + Sbjct: 569 -EIIFKVKQMEKTDPVEAAKYYVAYLQSQKAR 599 >gi|253991032|ref|YP_003042388.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782482|emb|CAQ85646.1| DNA primase [Photorhabdus asymbiotica] Length = 581 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 166/635 (26%), Positives = 294/635 (46%), Gaps = 67/635 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRAFINDLLARTDIIELIDVRVPLKKQGKN-----YHACCPFHNEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGSGSSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ +SL + ++ YL +RG+ I F +G+AP + + + Sbjct: 119 LMDKLNSFYQNSLNTSAAQQARQYLAQRGLSEEVIHRFSIGFAPAGWDNTLKRFARNAEE 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RQQLNDAGMLV-ANDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + + S +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEVQKSHK----------ELSQLLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R G+ AFE+ + +S L + L++ ++P+ + +L IN I + Sbjct: 347 DSLVRKEGRKAFEQRMEQSHTLSEFLFESLLPQVDLSSPEGKTKLSSLSVPLINQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + + + + N + K + Sbjct: 407 LRLYMRQELGNMIGIPDAVQLEHLLPQRLENGNNYQMPQLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ-------YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L+ L+ +P + ++A + L+ L + Q Sbjct: 452 -----RILIGLLVQNPHLAALVPPLQGIMQAKIAGLP--------LFMELVEVCLTQPGL 498 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ ++ + F + L++L + + ++ + + + L Sbjct: 499 TTGQLLEQYRDTKFSKQLEKLATW----------NDIQVEEIAENTFRDALDHLVDSALE 548 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + IA+ +G ++ + +++E + Sbjct: 549 ERLDIL---IARARTEGLTQEEREEVRLINESRAR 580 >gi|229061988|ref|ZP_04199314.1| DNA primase [Bacillus cereus AH603] gi|228717297|gb|EEL68970.1| DNA primase [Bacillus cereus AH603] Length = 600 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116 ++CF C G+ SFL + G +F E+VQ+L G+ + ++++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQQQEDISDDTVI 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + E+ ++HH L YL +RGI IE F++GYA + + + L++ Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S + +AGLL+ + + YDRFR R++FPI + +G+VIAF GR L ++ KYLN Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K K LYNF A +++K ++L EGY DVL+ ++GV+ V Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG TAFE L+ S+ V ++ + E + ++ + Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINHLRLGKNLQDESGKEEYVKSVLKELSLL 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +D Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E ++ ++ + + + E + + L++ + + Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + ++ + + E ++ + AL + L + Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 EI ++ Q+ E ++ L + Sbjct: 569 -EIIFKVKQMEKTDPVEAAKYYVAYLQSQKAR 599 >gi|167855426|ref|ZP_02478191.1| DNA primase [Haemophilus parasuis 29755] gi|167853420|gb|EDS24669.1| DNA primase [Haemophilus parasuis 29755] Length = 582 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 178/625 (28%), Positives = 292/625 (46%), Gaps = 54/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C V G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGVHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENVINRDGKPQASYKTRRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+++ F+ L + YL +RG+ I+ F++G++P++ ++ Sbjct: 119 LYELLDLVAKFYQQQLTQDSASQA--YLQQRGLSQEIIDRFEIGFSPNAMDAVLRRFGNN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +K+++ G+L D YDRFRNR++FPIR RG+VIAFGGR L E KYLNS Sbjct: 177 PEEVQKLLDTGMLSKNDRG-NVYDRFRNRVMFPIRDKRGRVIAFGGRVL-GDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +HKG LY + AL + + F+ +VEGYMDV++L Q GV N V+ Sbjct: 235 PESATYHKGNELYGLYQALQH----------NENPDFLFVVEGYMDVVALAQFGVNNAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++L+++ + +++ C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQLMFRSTEQVICCYDGDRAGRDAAWRALENALSYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+FIR GK FE+ + ++L L + L+ +T + +++L I I Sbjct: 345 EDPDTFIRSQGKEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + RH + Sbjct: 405 GEMLRLYLRNILGQKLGILDPTQLEVMLPQKSVETAPKRHNMPHIERTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P ++Q +++ ++ + L+ L + Sbjct: 455 --------RLLIALLLQNPHLVQNVPEDVTFLQSLQEKGFDLFLELVNICHANLGISMGG 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + L E L+ L + +V + L + + +LL RQ E Sbjct: 507 VLEHLRESPNYRHLELLANWDHLV---------SPENVENTFIDTLDFFYK-KLLDRQIE 556 Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621 + + T ++ L+ +L Sbjct: 557 ILMAK--DRTTGLNQQEKQELMMLL 579 >gi|83589487|ref|YP_429496.1| DNA primase [Moorella thermoacetica ATCC 39073] gi|83572401|gb|ABC18953.1| DNA primase [Moorella thermoacetica ATCC 39073] Length = 605 Score = 363 bits (931), Expect = 6e-98, Method: Composition-based stats. Identities = 175/634 (27%), Positives = 282/634 (44%), Gaps = 42/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +D I ++ I I +IG YV +R Y CPFH+EKTPSF + K Sbjct: 4 AFNQDVIHEVKDRIDIVEIIGGYVQLKKRGR-----SYVGLCPFHNEKTPSFTVSPDKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 +YCF C GD L+FL G SF E++ LAA AGV L P ++ +++ L R Sbjct: 59 FYCFGCGAGGDVLTFLMKREGLSFPEALAALAARAGVELVGEEETPAARRQRELKERLYR 118 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L +A F++ L ++ YL RGI F+LG+APD+ L +L+++GF Sbjct: 119 LGAIAASFYYRILARHPAGAPARSYLQRRGIKGVTARQFELGFAPDAGAVLVNYLQRQGF 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + E+I +AGL DRFR RL+FPI+ SR +VI FGGR L +G+ KYLNSPE Sbjct: 179 TPEEIEQAGL-SLSRPPRGLVDRFRGRLMFPIKDSRSRVIGFGGRVLGEGQP-KYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILFHKG +L+ +L ++K R ILVEGYMD+++ Q G+ NVV+SL Sbjct: 237 TILFHKGHHLFGLHLSLPGIRKEGRA----------ILVEGYMDMIAAWQHGIDNVVASL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT Q R L K + +++ +D D G A + +D+ G +V + L G+D Sbjct: 287 GTSLTPAQARELKKYAREVIIAYDADTAGQAATLRGLDI---LAAAGLQVRVLQLPEGKD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F+ G AF +L+ S L++ + T R + L + ++D Sbjct: 344 PDEFLAARGPEAFRELVAGSQGLMEFRIHKAVSEHDAGTAAGRKAIMTALLPYLRQVRDA 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y++ + + + + + + + + Sbjct: 404 VEQETYARLLNRYTGISETAILNDIRRPEARLDRAVKTTYIRD----------GRAGGTA 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 P E LL + PA+ EL + + + L + + E ++ Sbjct: 454 APHQAELFLLRAYLASPALATRIDAELGENWCRDQAARDLVAAVRERRRENPELTGPDLA 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L G + L ++ A E + + + + L RQ + + Sbjct: 514 GILTP-GREPQQEALLARLTLAEDLGPVEERAVNKAIR--------LLKLQQLRRQSKSL 564 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +A+ G+ E+ L + + I+ ++ Sbjct: 565 WLALARAEDTGDQEQVRELQGKIFHLQQTINSLK 598 >gi|254819371|ref|ZP_05224372.1| DNA primase [Mycobacterium intracellulare ATCC 13950] Length = 650 Score = 363 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 142/648 (21%), Positives = 249/648 (38%), Gaps = 37/648 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I ++G YV R CPFHDEK+PSFH + G Sbjct: 20 RIPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + P + ++ L+ Sbjct: 76 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLVA 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ +L++ YL ER D+ A F G+AP SL +HL +KGF Sbjct: 136 ANAAAAEFYAAALESDEAAPARQYLTERNFDAEAARHFGCGFAPSGWDSLTKHLVRKGFE 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+P Sbjct: 196 FKELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTP 253 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 254 ETLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA + L +L +L D A+ + + Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVA 363 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + + ++ + R + Sbjct: 364 PDGMDPCDLRLKSGDGALRDLVARRTPLFEFAIRSALAEMDLDSAEGRVAALRRCVPMVG 423 Query: 414 HIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IKD LR Y++ + + + I G + K AR S+R Q + Sbjct: 424 QIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGQSKNAKTPARGGAGPKASRRAEQPAAA 483 Query: 473 KGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + +P R + L + + +PA+ + L + + + + + + Sbjct: 484 AHAAASRPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAIRAAIETAG 543 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + +R L L ++ + + Y + Sbjct: 544 GTSSGVTGAQWLEVVRDRASSPLTAALISELGVEAIQVDEEKMP------RYIAGVLARL 597 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 598 QEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645 >gi|290960624|ref|YP_003491806.1| DNA primase [Streptomyces scabiei 87.22] gi|260650150|emb|CBG73266.1| DNA primase [Streptomyces scabiei 87.22] Length = 633 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 150/656 (22%), Positives = 275/656 (41%), Gaps = 46/656 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKVDHLSFSEAVERLAGQAGITLRYEEGGYNPTHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A +++ L + +L ERG D A F +GY+P L LR KGF Sbjct: 120 AHKLAAEWYAQQLATSPEADTGRIFLAERGFDQAAAVHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 ++++++ +GL + DRFR RL++PIR G V+ FG R L + ++ KYLN+P Sbjct: 180 ADKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYESDNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGGDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A +L PL + ++ TP RA + Sbjct: 345 APDGMDPCELRLAKGDDAVVELTEPRTPLFEFALRQIVARYDLETPAGRAAALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK+ ++ + + L L +++ + W ++ + ++ Q Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVAQLARWARDRGGQGPAPAARHTAQPYES 464 Query: 473 KGKLSKKPSL--------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + P+L E LL + P ++ + + + + Sbjct: 465 TARPPSGPALTLRNPVFATERELLKLALQRPELVAPAFDAYGVDEFTAAPYAAVRVAIIE 524 Query: 525 DFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E P+E R+ E + ++ + ++ + V + Y Sbjct: 525 AGGVEYGAEDPQEYLVRVREAAPDDTVRAMVTELAVEAIM-------RKKVDEVYAGDQL 577 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI--QIHQIESQEAM 637 + R R + R+ +++ +A+ TA+G+ + A + + L + Q + EA+ Sbjct: 578 VTVRRRAVERRVRDVQGSLARATAQGDPAQLAAVQNELWVLQQYDQALRERGAEAL 633 >gi|288916959|ref|ZP_06411331.1| DNA primase [Frankia sp. EUN1f] gi|288351668|gb|EFC85873.1| DNA primase [Frankia sp. EUN1f] Length = 667 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 149/670 (22%), Positives = 259/670 (38%), Gaps = 62/670 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + PI++++G +V G CPFHDEK+PSF+ S GF Sbjct: 16 RIRDADIALVRERSPIADIVGDHVQLRPVG----GGSLVGLCPFHDEKSPSFNVRPSVGF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF C+ GD +F+ + G SF E+V+RLA AG+ L P + L+ Sbjct: 72 FHCFGCNEGGDVYAFVRKIDGLSFPEAVERLARRAGITLTYEGGGPTSRAVTSQRQRLLD 131 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +AT+F+ L + + +L RG D A E F LGYAP S +L HL + F Sbjct: 132 AHRLATEFYVEQLYSSPDARAGWEFLASRGFDRSAAERFGLGYAPASWDALTRHLLARRF 191 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236 + E++ GL G DRF +RL++PIR G+V+ FGGR L++ KYLN+ Sbjct: 192 TAEELELGGLAKRG-GRGGLIDRFHHRLLWPIRDLGGEVVGFGGRRLAEGSDAGPKYLNT 250 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 ET LF K + LY A + + +++VEGY DV++ +GV V+ Sbjct: 251 AETPLFKKARLLYGADLARRDIARRY----------QVVVVEGYTDVMACHLSGVTTAVA 300 Query: 297 SLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 S GT+ + ++ + + ++ FDGD G AA +A + + + Sbjct: 301 SCGTSFGSDHVAIVRRLLMDSDSRTGEVIFTFDGDQAGQAAALRAFEFEERFVT---QTF 357 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G DP G A L+ PL + + + NT + R Sbjct: 358 VAVQPDGLDPCDLWTQRGDAAVRDLVAARQPLFEFAIRGAIDRYDLNTTEGRLAALDAAA 417 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD----------- 458 +N +KD +R+ Y+ + L L ++++ E R + + Sbjct: 418 PLVNRLKDAGIRHRYAVNLDRWLGFLDERFVVERVASHRSRAQGSPGAQGSSGAPGSSGA 477 Query: 459 -----------QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 G + + + ++ E L + HP + + LA Sbjct: 478 HGSTRARGSSGADGTAAAASARRRPEPAPDEATAIVERETLKLALQHPGLAGPMFDTLAA 537 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYF----LPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + + + + + P + E +L R V + Sbjct: 538 ELFTVPVHRAVRELIATAGGVCAGLYAAGDPSGWAAAVVAAAPDE---ELRRFVLALAVE 594 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + DV Y + ++R+ E++ ++ ++ +++ L Sbjct: 595 GVLCDH---DVDDRYVDDQMSRVQELHVTRRIREVKSRVQRLNPTSDSDAFNRAFGELIA 651 Query: 624 VHIQIHQIES 633 + Q+ Sbjct: 652 LEQHKLQLRE 661 >gi|114328949|ref|YP_746106.1| DNA primase [Granulibacter bethesdensis CGDNIH1] gi|114317123|gb|ABI63183.1| DNA primase [Granulibacter bethesdensis CGDNIH1] Length = 616 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 178/642 (27%), Positives = 292/642 (45%), Gaps = 32/642 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M DF+ +L PI+++IG+ V + N + CCPFH EKTPSF+ D Sbjct: 1 MALSPDFLDELRARTPIASVIGRRVRLSKAGRN-----WKGCCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD +SF+ G F+E+V++LAA AG+ +P + ++ + + + + Sbjct: 55 -FHCFGCGVHGDVVSFVMQSQGAGFLEAVEQLAAEAGLDMPKPSREETRQAEARAGVHEV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A D++ L +R YL +RG+ I F LG+AP R SL + KG + Sbjct: 114 LAQAGDYYATLLSKPEGQRGLTYLLDRGLSEATIRRFGLGWAPV-RGSLAMAMAGKGITP 172 Query: 181 EKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E++ EAGLL + + +D+F R++FPIR RG++I+FGGR L KY+N PE Sbjct: 173 EQLAEAGLLRLDEDGPTRRPWDQFHERVMFPIRDRRGRIISFGGRIL-GDGQPKYVNGPE 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K ++LY A ++ + ++ VEGYMDV++L QAG V+ L Sbjct: 232 TAVFSKRRSLYALDLAREAVR----------GGAALLAVEGYMDVIALHQAGFSGAVAPL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE QL LW+LSP +LCFDGD G RAA + +L L L ++ L GED Sbjct: 282 GTALTEEQLDALWQLSPAPILCFDGDAAGARAALRVAELALPLLTTERTLHVARLPPGED 341 Query: 359 PDSFIRCYGKTAFEKLIVES--LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 PDS I G F ++ ++ D L+ E ++ TP++RA + L + I Sbjct: 342 PDSLISTRGADTFSAVLEDARRRSFADALFAMLREGQALETPEQRAVFQRRLNDAAARIA 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D+ L Y A+R++ L + G P+ + +L Sbjct: 402 DKTLAAEYRSALREKFYALRRPAAAPRRGGNYGGGSRGSGWQLTQPAPNRLDPALAAEMA 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + R L L++HPA+L + + A + + L ++ + + E Sbjct: 462 GIE---RLRILTAILLSHPALLHDVEEAFATLDLPD-WLDRVRRAILTIPDHTDPLDSEG 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSRQ 594 + L G G ++++ A + + + R R L ++ Sbjct: 518 LIDHLQRAGLGREVERVFAPHPFPLPICAVSGGAVMPAEAEAAWWHIFGFLHRDR-LDQE 576 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + + + + L+ ++ + + EA Sbjct: 577 VMAAQHAWDEHGDEQSQRRLTALVQARDKIRR--GESDDAEA 616 >gi|225021801|ref|ZP_03710993.1| hypothetical protein CORMATOL_01829 [Corynebacterium matruchotii ATCC 33806] gi|224945497|gb|EEG26706.1| hypothetical protein CORMATOL_01829 [Corynebacterium matruchotii ATCC 33806] Length = 630 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 130/647 (20%), Positives = 253/647 (39%), Gaps = 44/647 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + I +IG+YV + PF DEKTPSFH + G+ Sbjct: 5 RIPNSDIQAIRERAAIEEIIGEYVQLKPSGS----DSLKGLSPFKDEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 Y+CFS GD +FL + +F E+V+ +A + + + LI Sbjct: 61 YHCFSTGKGGDVFNFLMEMEHLTFPEAVELVADKINYHINYQGGSTGAPAVEPGTRKRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A F+ L+ + + +L +RG I F+ GYAP+ ++ +HL +K F Sbjct: 121 EANRAAHAFYRKQLETPQAQVARTFLLDRGFSKELIYSFECGYAPEGWDAVTKHLLKK-F 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + ++ AGL + DRFR RL++PI++ G VI FG R L + + KYLN+P Sbjct: 180 TFPELEAAGLSV--MGRRGPVDRFRRRLLWPIKNISGDVIGFGARKLFEDDQLGKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + SS ++VEGY DV+++ AGV V+S Sbjct: 238 ETLLYKKSKVLFGLDRAKKNIA----------SSRQCVVVEGYTDVMAMHAAGVATAVAS 287 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + L+++ ++ FDGD+ G +AA +A + + Sbjct: 288 CGTAFGDDHLQMIRRLMLDDTYFRGELIYTFDGDEAGQKAAKRAFEGNQKFTG---QSYV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + DP G A L+ +P+ + + + + +TP+ R + Sbjct: 345 AVAPDNLDPCDLRLQKGDAAVRDLVASRVPMFEFMIRAVIADYRLDTPEGRLQAMRRAVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------KGPSQ 464 + I D+ L+ Y++ + + + + + + R + Sbjct: 405 IVASIHDRALQSEYARRLSGWVGWMDEDEVLSQVRVAARNPRPVEPRRAVRFDSDAAVAV 464 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 Q+ L + + L + +P ++ + + + + + + + + Sbjct: 465 DAPQARLPQPDAKSIQLWPQRESLKLALQYPGVVADGFDAVPEAAFSFETYRVIRHAIAQ 524 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + E + L + + L V + + +A Sbjct: 525 AGGC-----RAAVVGEWAGMVASE-IDDLIGRSLVSELVVEDIHLQGESVETYWDRTVA- 577 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + +S + +++ ++ ++ + + + + L + Q Q+ Sbjct: 578 RLQEQQVSNEISQLKSKMQRMRPSDDEQAYRSMFANLIALEQQKKQL 624 >gi|242240772|ref|YP_002988953.1| DNA primase [Dickeya dadantii Ech703] gi|242132829|gb|ACS87131.1| DNA primase [Dickeya dadantii Ech703] Length = 584 Score = 363 bits (930), Expect = 7e-98, Method: Composition-based stats. Identities = 176/630 (27%), Positives = 287/630 (45%), Gaps = 54/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIIDLIDARVKLKKQGKN-----YHACCPFHHEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + L Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGTGPSQLERHQRQSLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + F+ +L + YL++RG+ I+ F +G P ++ + + Sbjct: 119 LMAQLSVFYQQTLDQPAGRAAREYLNKRGLSDDVIKQFAIGCTPSGWDNVLKRFGRSSED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AG+L+ + SYDRFR+R++FPIR RG+VIAFGGR + + KYLNSPET Sbjct: 179 RSTLTDAGMLV-TNEQGRSYDRFRDRVMFPIRDKRGRVIAFGGRVM-GDGTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + + + +++VEGYMDV++L Q GV V+SLG Sbjct: 237 EVFHKGRQLYGLYESQQ----------KHPDLKKLLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTADHIQLLFRATDQVVCCYDGDRAGRDAAWRALETALPYLDDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R GK AFE+ I +++PL L+ + +TPD RA+L I+ + + Sbjct: 347 DTLVRKEGKAAFEQRIEQAMPLSAFLFDTLLQQVDMSTPDGRAKLSTLALPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L L + + + K + Sbjct: 407 LRLYLRQQLGQKLGLLDDSQLDRLMPRISEQASSYQPPRLKVTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ L+ HP + E L I + L+ + E + Sbjct: 452 -----RILIGLLVQHPRLSAEVPDLSLEGIEENRMPGLSLFLDVVKTCSESPGMSMGLLL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + + L+ L + I + + Y Q L ++ + Sbjct: 507 EKYRDSPYRRQLETLASWNHMIEEEELEEKFRIS-LAELYDQLL------------QQRL 553 Query: 599 EKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 E IA+ G A++ L S+ + + Sbjct: 554 EALIARDRTHGLNAQERKELWSLQLALTRK 583 >gi|304403969|ref|ZP_07385631.1| DNA primase [Paenibacillus curdlanolyticus YK9] gi|304346947|gb|EFM12779.1| DNA primase [Paenibacillus curdlanolyticus YK9] Length = 616 Score = 363 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 264/640 (41%), Gaps = 41/640 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +G+YV + CPFH E+TPSF Sbjct: 5 RIPDSAIDAVRNAHDIVETVGKYVHLTKNGK-----YMKGLCPFHSERTPSFTVTPELQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119 ++C+ C G+ + F++ + G SF E+V+ LA AG+P+ DP + + I Sbjct: 60 FHCYGCGKSGNVIRFIAEIEGYSFPEAVRLLAEEAGIPVTWSDPADAGPPADPNRDKQIE 119 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+A +H+ L N + + YL +RG+ I+ F +GYAP+S +L L + F Sbjct: 120 AHELAAKLYHYLLMNTEQGRSALSYLRDRGMSDRLIDQFSIGYAPESWDTLARFLESRQF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + + GLL + + DRFR R++FPI + G+VIAF GR L KYLNSPE Sbjct: 180 ALPLMEKGGLLSAKQDGSGYVDRFRGRVMFPIWNRDGKVIAFAGRAL-GDGQPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + LF K + LYNF A ++K + ++L EGYMDV+ AGV N ++++ Sbjct: 239 SPLFTKSRTLYNFNNARPDIRKRRK----------VVLFEGYMDVIKSWSAGVHNGIATM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ +L + + +++C+DGD+ G AA KAI + G V+ +L G D Sbjct: 289 GTALTDEHAVILSRSAEEVIICYDGDNAGRAAAMKAIPM---FEKAGMTVSVAMLPGGMD 345 Query: 359 PDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD I YG AF ++ + V +N + + + I + Sbjct: 346 PDETIDAYGPDAFLRDVMDHPVSAVKFKLIYSRKNHMLEEDEGLRKYLLEAARIIAEVPS 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR-----LMQSSLV 472 R Y + + + + + RD G S SS Sbjct: 406 AMEREVYMKELHREFEVSLDSLKQDVHAVRETMQNLQAPRDNNGFSWNNGRNEKRSSSSG 465 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L E LL ++ + + L D ++ + L ++L++ + + Sbjct: 466 PPTLLPAYQQAERKLLSVMMRDVETARVVHDRLGD-AFNVEDHAALAAYLYAFYAQGHDP 524 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + L + + + D + + + + R R L Sbjct: 525 DVQRFISTLQDDRLESTAASI--LLMDGDFPFN------EQLLDDFIREIRKLPRMRELE 576 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 ++ ++Q+ + G+ + + S + + Q+ + Sbjct: 577 QK----KEQLVRAERSGDIAQAVQIASEIIALERQLKGRQ 612 >gi|331085864|ref|ZP_08334947.1| hypothetical protein HMPREF0987_01250 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406787|gb|EGG86292.1| hypothetical protein HMPREF0987_01250 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 591 Score = 363 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 151/615 (24%), Positives = 266/615 (43%), Gaps = 45/615 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D ++++ + I ++I YV ++ + Y+ CPFH EK+PSF + K Sbjct: 1 MYYSEDIVEEVRMKNDIVDVISGYVKLQKKGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AGV LP + ++K ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKMLAERAGVELPEMEYSKEAKEKANLKNTLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK + + YL +RG+ I F LGY+ L + LR+KG+ Sbjct: 116 EMNKLAARYFYSQLKGKNGEHAYRYLTDRGLTDTTITQFGLGYSNKYSDDLYKFLREKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ I +AGL I+ D YD+F NR++FPI + +VI FGGR + KYLNSPE Sbjct: 176 SDDLIRQAGL-INTDEKHGIYDKFWNRVMFPIMDANNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + + ++ EGYMDV+SL QAG N V+SL Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A+ + G + + +D Sbjct: 282 GTALTAGHASLIKRYVSEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + +TP+ + E + +++ Sbjct: 339 PDEFIKNLGAEAFEQRIGKARNGFMFSLEILERQYDMHTPEGKTEFYYEAAKRLAQFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A+ + + + K A P R + + + Sbjct: 399 IERNNYIDAVAEAYHIGYDSLRKLVA-------KAAVQSGMASPVARPRTTHAKEQQKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL +I ++ + + + + + L+ + E+ P +I Sbjct: 452 GMLQSQKILLTWMIEDESLFGMIRKYIMPEDFTTELYRTVALLLYEQY-EKGEVSPAKIM 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585 + + L + E + + ++ + Sbjct: 511 NHFTDEEEHREVAALFHTKIRELTTKSEQEKALKETIIRVKENSIETATRNLEPTDIVGL 570 Query: 586 KRFRLLSRQKEEIEK 600 +R R ++++K Sbjct: 571 QRLMESKRAVQDLQK 585 >gi|154498376|ref|ZP_02036754.1| hypothetical protein BACCAP_02365 [Bacteroides capillosus ATCC 29799] gi|150272687|gb|EDM99865.1| hypothetical protein BACCAP_02365 [Bacteroides capillosus ATCC 29799] Length = 596 Score = 363 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 154/577 (26%), Positives = 255/577 (44%), Gaps = 29/577 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P FI +L+ IS+++ YV +++ +N W CPFH+EKTPSF N K Sbjct: 1 MPIPEQFIDELVARSEISDVVSSYVTLNKKGSNL-----WGLCPFHNEKTPSFSVNQDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G +SF+ + SF ++V+ LA AG+ +P + K + + Sbjct: 56 IYHCFGCGKGGGVISFIMEIENLSFPDAVRFLAKRAGLEVP-DTGSDDAGRKKRARALEA 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A F+H LK R+ Y+ +R I F LG APD +L + L KG+S+ Sbjct: 115 NKDAARFYHDYLKGPGGARVREYIAQRQISPRTATRFGLGAAPDQWDALTKALTAKGYSK 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++I+AGL + + YD+FR RL+ P+ RG V F R L E KYLN+PET+ Sbjct: 175 MELIDAGLAV-AGKNGGIYDKFRARLMLPVIDVRGDVAGFTSRILPGEEGAKYLNTPETV 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG+ +Y A N + +ILVEG +DV++L QAG NVV+++GT Sbjct: 234 VFKKGRLIYALNFAKNTKR------------PNLILVEGNIDVITLHQAGFDNVVATMGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE--- 357 ALTE R+L + + +VLC+D D G ++ + + ++ + + E Sbjct: 282 ALTEEHARILARYTKELVLCYDNDPAGKKSTDRVLGILKNADLNVRVLQLPNAYDSEGNP 341 Query: 358 ---DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD FI+ +G AFEK + S D + + S + R + Sbjct: 342 LKQDPDDFIKRFGAAAFEKCLNGSAGQNDYRLESLLQKHSLADEEGRMAFLREAVETVAS 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---PSQRLMQSSL 471 ++ R Y + E Y + A+ + + P+ +L Sbjct: 402 LQSPIEREIYGNKAAAAGGISAAAFAQEVERYRKNRAWQAKKKQTRKDLTPAAQLQPRER 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + E +L ++ P + Q L ++ + L +++ L + + E + Sbjct: 462 ELRYENIRSARAEEGVLRLMLLEPGLFQS-AGALEPEQFSSPLLGRVYGMLRTRWQEGRS 520 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 + L L+ LD+ A A + Sbjct: 521 TQLPALTGELTADEMSHLVHVLDQPESLAHSQKALAD 557 >gi|15595774|ref|NP_249268.1| DNA primase [Pseudomonas aeruginosa PAO1] gi|18203017|sp|Q9I5W0|PRIM_PSEAE RecName: Full=DNA primase gi|9946448|gb|AAG03966.1|AE004494_2 DNA primase [Pseudomonas aeruginosa PAO1] Length = 664 Score = 363 bits (930), Expect = 8e-98, Method: Composition-based stats. Identities = 181/678 (26%), Positives = 295/678 (43%), Gaps = 87/678 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQLAHHSPPPSSMDHGASGVLDGDDYFAASAYYENEPS 468 Query: 442 -----EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------GKLSKKPSLREAA-- 486 GY + + ++D+K + + P E+ Sbjct: 469 HAPFDAAPGYVEAQPRKSWNKDKKPWDGKKWDGKKKWDKGGRGDFKAPQRTPVSVESTTL 528 Query: 487 -LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L TL++HP + + + + + +L L + ++ R Sbjct: 529 NALRTLLHHPQLALKVDDA-GTLAREQDTYAQLLVSLLEALQKNPRQSSMQLIARWHGTP 587 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G LL+ L + ++ + + + S++ E E+++ V Sbjct: 588 QGRLLQALGEKEWLIVQ---------ENLEKQFFDTITKLSE----SQRFGEREERLRSV 634 Query: 606 TAKGEAEKTAILISILHE 623 K +E T ++L E Sbjct: 635 MQKSYSELTDEEKALLRE 652 >gi|284049112|ref|YP_003399451.1| DNA primase [Acidaminococcus fermentans DSM 20731] gi|283953333|gb|ADB48136.1| DNA primase [Acidaminococcus fermentans DSM 20731] Length = 603 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 173/635 (27%), Positives = 282/635 (44%), Gaps = 54/635 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 +F + + + ++ + V RR T YW CCPFH EKTPSF + ++G ++CF Sbjct: 10 NFKEQVRQAADLLTIVSETVSLKRRGTQ-----YWGCCPFHGEKTPSFKVDPARGLFHCF 64 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIEV 123 C GD S++ +F E++++LA G+P+P + +EK +++ ++ Sbjct: 65 GCGAGGDVFSYVMKRDNLTFPEALKQLAEKYGIPVPERAKSAREIAREKESREVMGANDL 124 Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A+ FFH L +R YL RGI I+ F LG AP +L L ++G +EE Sbjct: 125 ASRFFHSCLVNTRYGERGIQYLAGRGIGRDIIDSFGLGLAPPDFQTLSTALEKRGVTEEV 184 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETIL 241 +++AGL+ YD+FR R++ PIR RG+V+ F GR L K KY+N+PET Sbjct: 185 LLKAGLVSPRQRGTRVYDKFRARVMIPIRDPRGRVVGFTGRILDKDASPAKYMNTPETAW 244 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG L+ A ++K ++VEG+MD +SL AG+ V+S+GTA Sbjct: 245 FHKGNLLFGLDRASGPIRK----------RQQALIVEGHMDAISLHAAGIDWAVASMGTA 294 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 TE+Q LL +L+P +V CFD D GL AA +AI L L G + + ++ G+DPD Sbjct: 295 FTEHQAALLKRLTPEVVFCFDSDRAGLAAAMRAIPLAL---QAGLKCRVMHVTDGKDPDE 351 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 FIR G+ AFE+L+ + P +D T + E + + Sbjct: 352 FIRKEGREAFEELLNNAKPGMDYQVDTVLGECDLETLGGKVEAVDKVLPLFRDCQSDVEV 411 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL +E+ + H++ G + + K K++ Sbjct: 412 GERIRELSRRLAIDEGLIQSEY--------RKLTHQESGGRAYNPEWLTQQKVKVTSPTE 463 Query: 482 LREAALLLTLIN----HPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEE 536 E +L + P + +A + + + Q +++ E Y P + Sbjct: 464 QAERLVLRAFLEGIPPRPG-----QEGIAHVDSFTSPSRQAIFTTFLRMVQEGTYKDPRD 518 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + G GEL L V L S L + L R+ Sbjct: 519 LFPHLDDAGAGELTGILTLNVEKGTLPSI------------LADCLR-RLQIAALDREY- 564 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E Q+A+ K EK ++ + ++I ++ Sbjct: 565 EKHSQLAEKYEKEGNEKFLQELAECRRIKMEIGKL 599 >gi|27468167|ref|NP_764804.1| DNA primase [Staphylococcus epidermidis ATCC 12228] gi|57867103|ref|YP_188704.1| DNA primase [Staphylococcus epidermidis RP62A] gi|282876012|ref|ZP_06284879.1| DNA primase [Staphylococcus epidermidis SK135] gi|293366477|ref|ZP_06613154.1| DNA primase [Staphylococcus epidermidis M23864:W2(grey)] gi|38605275|sp|Q8CP23|PRIM_STAES RecName: Full=DNA primase gi|78099125|sp|Q5HNY6|PRIM_STAEQ RecName: Full=DNA primase gi|27315713|gb|AAO04848.1|AE016748_82 DNA primase [Staphylococcus epidermidis ATCC 12228] gi|57637761|gb|AAW54549.1| DNA primase [Staphylococcus epidermidis RP62A] gi|281295037|gb|EFA87564.1| DNA primase [Staphylococcus epidermidis SK135] gi|291319246|gb|EFE59615.1| DNA primase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735177|gb|EGG71469.1| DNA primase [Staphylococcus epidermidis VCU045] gi|329737410|gb|EGG73664.1| DNA primase [Staphylococcus epidermidis VCU028] Length = 598 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 281/635 (44%), Gaps = 41/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L + + + K + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL ERG I+ ++GYAPD+ + + L +K Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + T +DRFRNR++FP+++ +G+++ + GRT + KYLNS Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A +++K IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRILYNLNKARKFIRKQ----------DEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ + L FDGD G A K L G V V L G Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR Y F K + + + + +N + + ++ + Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R Q I D + + E ++ + Q + Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E AL+ L YQ++ + N+ L++++S+L+ + + Y+ + Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E+L +LD+ + + + + Y Q + L Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ + + G++E + ++ V+ +++ Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598 >gi|229086863|ref|ZP_04219023.1| DNA primase [Bacillus cereus Rock3-44] gi|228696438|gb|EEL49263.1| DNA primase [Bacillus cereus Rock3-44] Length = 598 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 274/636 (43%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G SFIE+VQ+L + + E++E I D ++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLSFIEAVQKLGERNNISVVDYTSGQEQQENISDDSVIML 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI I F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIAKFEIGYASPAWDAAAKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 FS + +AGLL+ + + +DRFR R++FPI + +G+V AF GR L ++ KYLNSP Sbjct: 179 FSLATMEQAGLLVRSERDGSHHDRFRGRVMFPIHTLQGKVAAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A ++++K ++L EGY DVL+ ++G++ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARSFIRK----------RGQVVLFEGYADVLAAVKSGIEESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L + G V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LVQVGCHVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TAFE L+ S+ V ++ + E + + ++D Sbjct: 345 DPDEYVQQYGTTAFENLVKASISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELALLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y +++ + + + Y + K + Q +++Q Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLGQLHQYRKEQKVQQKQTKQISKPPQIVQ----AKPKF 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + + E + + L++ + + Sbjct: 461 SGFERAERELIYHMLQSAEVAFRIEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGNF 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + ++ + + E L LSR K++ Sbjct: 519 LSWLSDEKMKNIITNI------STDEFINPEYTDE----------VLQGHLEALSRHKQK 562 Query: 598 IEKQ-----IAQVTAKGEAEKTAILISILHEVHIQI 628 ++K I Q+ E ++ L + Sbjct: 563 LKKMETIFTIKQMEKTDPVEAAKFYVAYLQNQKTRR 598 >gi|104779688|ref|YP_606186.1| DNA primase [Pseudomonas entomophila L48] gi|95108675|emb|CAK13369.1| DNA primase [Pseudomonas entomophila L48] Length = 660 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 174/675 (25%), Positives = 294/675 (43%), Gaps = 85/675 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N ACCPFH EK+PSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKTGKNLS-----ACCPFHKEKSPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREEGRRGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E A +F+ +L+N K YL RG+ F LG+AP +L +HL Sbjct: 120 LEAAAEFYRQALRNHPTRKAAVEYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSSLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF+ + + L D +++ + + + +A + I + Sbjct: 349 DSLVRAEGTDAFQARINQHAQSLADYFFEQLSNEADPRSLEGKAHMAALATPLIEQVPGA 408 Query: 419 KLRYYYSQAIR----------DRLQQLFQK------------------------------ 438 LR ++ +RL++ Sbjct: 409 NLRQLMRNRLKEITGLDAQQTERLRKDTPPPSLPSHNLAPDYNYPSEIDYGHYGDPAPPD 468 Query: 439 --------YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 S ++ + + + + T Sbjct: 469 YSADAHGYQEWTPSKGSSKKPRDGKSWKGGKNWKDGEWRREPPQWVPVAVEPPIRIAIRT 528 Query: 491 LINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 +++ PA+ + + + E +L + ++ E+ R +G Sbjct: 529 VLHRPALALKVEDA---SNFADEKSEDGQLLISVVQSVQKKPELSSMELMARCHGTQYGA 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +L+ + + + N+ L+ +R R L R + ++ ++ Sbjct: 586 MLRSMAEK------EWLIEDQNLEQQFFDTINRLSATQRERGLERLIS--KSRLTKL--- 634 Query: 609 GEAEKTAILISILHE 623 + ++ A L+ +L Sbjct: 635 -DEDENAKLLDLLRR 648 >gi|300854007|ref|YP_003778991.1| putative DNA primase [Clostridium ljungdahlii DSM 13528] gi|300434122|gb|ADK13889.1| predicted DNA primase [Clostridium ljungdahlii DSM 13528] Length = 590 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 168/630 (26%), Positives = 279/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I+ + I ++I + V R N Y CPFH EKTPSF + K Y Sbjct: 2 ISEDVIQKIKDASDIVDIISESVKLKRAGRN-----YLGLCPFHQEKTPSFSVSVDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F+ L +F E+++ LA A + L + ++ L +L Sbjct: 57 KCFGCGEAGNVITFVMKLKKLTFPEALKILADRANIDLDENGNRNGNRKNTYEKLYKLNI 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F++ L K Y+ RGI + F +GY+ DS + L++KGF+E Sbjct: 117 EAARYFYNCLNKN--KIAKSYMLNRGITEKTMNKFGIGYSVDSWNDMLIFLKKKGFTELD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ GL+I YDRFRNR+IFP+ RG+VI FGGR L KYLNSPET LF Sbjct: 175 MLSDGLIIKSKKG-NYYDRFRNRIIFPVFDFRGKVIGFGGRVL-DDSKPKYLNSPETHLF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ N+S I+VEGYMD +SL Q G+ N V+SLGTAL Sbjct: 233 KKGINLYGLNFAIK-----------NNTSRMFIIVEGYMDCISLHQYGITNAVASLGTAL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ + ++++ +D D G A + +D+ G V +++ +G+DPD F Sbjct: 282 TINQAKLMARYVDKVIISYDADAAGQIATVRGLDI---LKSVGLEVRVLVVPQGKDPDEF 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR GK AF +L+ ++LPL++ + N +FN ++ + ++ + D R Sbjct: 339 IRNNGKDAFLELVDKALPLIEYRIQNIKSNMNFNDSEDTIKYVEKALKILSQL-DPIERE 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y ++I + Q + N + +K + K L Sbjct: 398 IYVKSISEETGIRDQVLYDMLND-------NIQKNVKKNEKVNIDAGFGQKLYLEPAYLK 450 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL + + + ++ +K++ ++ E + E+ + + Sbjct: 451 AERALLKLISENEEAFKYALDKIEVDNIILESHKKIYRYIV----ENMKYDIEKRKKFVE 506 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + V N D+ Y + ++ L + K+ I +I Sbjct: 507 LNCHD--VDTSKEWVNIMETKIKYDSINYKDMIDNYIDKIERHR----LEKSKKHIINRI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G ++ L L ++ +I +++ Sbjct: 561 KECEAQGNLNESLKLAQELIKIQKRIGEMQ 590 >gi|145223309|ref|YP_001133987.1| DNA primase [Mycobacterium gilvum PYR-GCK] gi|315443769|ref|YP_004076648.1| DNA primase [Mycobacterium sp. Spyr1] gi|145215795|gb|ABP45199.1| DNA primase [Mycobacterium gilvum PYR-GCK] gi|315262072|gb|ADT98813.1| DNA primase [Mycobacterium sp. Spyr1] Length = 647 Score = 362 bits (929), Expect = 9e-98, Method: Composition-based stats. Identities = 134/652 (20%), Positives = 249/652 (38%), Gaps = 42/652 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I +++G YV R CPFHDEK+PSFH + G Sbjct: 11 RIPDRDIAAIRERVNIEDVVGDYVQLRRAGA----DSMKGLCPFHDEKSPSFHVRPNHGH 66 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 ++CF C GD +FL + SF+E+V+ LA G + +++ ++ L+ Sbjct: 67 FHCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRVGYTVTYTGGSTTNVQRDRGSRSRLL 126 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ L++ YL +R D+ A F G+AP +L +HL +KGF Sbjct: 127 AANAAAQEFYAEQLQSEEAALARQYLLDRNFDAAAATKFGCGFAPSGWETLTKHLLRKGF 186 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +++ AGL + DRF RL++PIR+S G+VI FG R + + + KY+N+ Sbjct: 187 EFKELEAAGLSRE--GRRGPMDRFHRRLLWPIRASGGEVIGFGARRIFDDDPMEAKYVNT 244 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K L+ A + K+ R ++VEGY DV+++ AG V+ Sbjct: 245 PETVLYKKSSVLFGLDLAKRDIAKAHRA----------VVVEGYTDVMAMHLAGETTAVA 294 Query: 297 SLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 S GTA + L LL + R L F D A + G V Sbjct: 295 SCGTAFGDSHLSLLRRLMMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV 354 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE--RAELEIHLK 409 + G DP G A L+ +P+ + + + D + + Sbjct: 355 -AADGMDPCDLRLKSGDGALRDLVARRIPMFEFAVRSLIPSGDILDNDPHAKVDALRQCV 413 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++ I+D LR Y++ + + R + R R + P+ Sbjct: 414 PLVSRIRDYALRDEYARRLAGWTGWSDESQVLSRVREEAAKRGMPERGRRRGAEQPAAPR 473 Query: 467 ----MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + L + + PA+ + L + + + + + Sbjct: 474 GVAAPAPGASRPDPADPTLWPQREALKSALQFPALAGPVFDSLTAESFTHPGYAAVRAAI 533 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + + + ++ L ++ + + Y ++ Sbjct: 534 GAAGGTSAGLSGAQWIEAVRDQATSPPASSLINELGVEAIN------ADDERLPRYIGSV 587 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 588 LARLQEVWIGRQIAEVKSKLQRMSPVEQGDEYHALFGDLVAMEAYRRSLLEQ 639 >gi|238924710|ref|YP_002938226.1| DNA primase [Eubacterium rectale ATCC 33656] gi|238876385|gb|ACR76092.1| DNA primase [Eubacterium rectale ATCC 33656] gi|291526135|emb|CBK91722.1| DNA primase [Eubacterium rectale DSM 17629] gi|291527131|emb|CBK92717.1| DNA primase [Eubacterium rectale M104/1] Length = 590 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 148/633 (23%), Positives = 252/633 (39%), Gaps = 51/633 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + I+++ I ++IG YV ++ + Y+ CPFH+EKT SF + +K Y Sbjct: 4 YSDELIEEVRSRNDIVDVIGSYVHLQKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C G+ +FL +F E++Q LA G+ LP ++ +T L+ + Sbjct: 59 YCFGCGAGGNVFTFLMQYENFTFPEAMQELADRVGIELPKQEMTSAQRREADRRTQLLEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L+ R +R H Y +R + ++ F LGY+ L ++LR KG+ + Sbjct: 119 NKEAAKYFYMLLRGPRGQRAHEYFKKRELSDETMQKFGLGYSDQYSDDLYKYLRSKGYDD 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + E GL+ + +D+F NR +FPI +VI FGGR + KYLNSPET Sbjct: 179 EILKETGLVTIDEVRGG-HDKFWNRAMFPIMDVHNRVIGFGGRVM-GDGEPKYLNSPETK 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NLY A + ++L EGYMDV++L QAG N V+SLGT Sbjct: 237 IFDKSRNLYGLNIAR------------STRKNQLLLCEGYMDVIALHQAGFDNAVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT LL + + + L +D D G++AA +AI + G + + +DPD Sbjct: 285 ALTSGHASLLKRYTNEVYLTYDSDGAGVKAALRAIPI---LKEVGITTKVINMRPYKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G +E+ I ++ + + P+ + + + ++ Sbjct: 342 EFIKALGAQEYEERIKKAENSFMFQIRIMQAGYDMDDPESKTAFYNEIAKKLLGFTEELE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y+QA+ + + P +L K K Sbjct: 402 RTNYTQAVSREYSIPYDDLRKLVNSMAMKG-------GIVKPQTKLKSGINEKNKKEDGM 454 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL LI ++ ++ + K+ +FS + P I Sbjct: 455 KQSQKLLLTWLIEDNSLFDRIKGRISADDFTEELYHKVAKEVFSQYETTHTVNPARIVSM 514 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L Q + L I++ Sbjct: 515 FTDEDEQREVAGLFN--------------------ATIHQVEGKNDKATALRETVVRIKQ 554 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +K A + + E + +++ Sbjct: 555 NSIDYRSKHLAPTDMEGMMRIIEDKRALEELQK 587 >gi|325662014|ref|ZP_08150633.1| hypothetical protein HMPREF0490_01371 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471677|gb|EGC74896.1| hypothetical protein HMPREF0490_01371 [Lachnospiraceae bacterium 4_1_37FAA] Length = 591 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 151/615 (24%), Positives = 266/615 (43%), Gaps = 45/615 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D ++++ + I ++I YV ++ + Y+ CPFH EK+PSF + K Sbjct: 1 MYYSEDIVEEVRMKNDIVDVISGYVKLQKKGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AGV LP + ++K ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKMLAERAGVELPAMEYSKEAKEKANLKNTLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+ LK + + YL +RG+ I F LGY+ L + LR+KG+ Sbjct: 116 EMNKLAARYFYSQLKGKNGEHAYRYLTDRGLTDITITQFGLGYSNKYSDDLYKFLREKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ I +AGL I+ D YD+F NR++FPI + +VI FGGR + KYLNSPE Sbjct: 176 SDDLIRQAGL-INTDEKHGIYDKFWNRVMFPIMDANNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + + ++ EGYMDV+SL QAG N V+SL Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFLICEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A+ + G + + +D Sbjct: 282 GTALTAGHASLIKRYVSEVYLTYDSDEAGTKAALRAVPI---LKEAGISAKVIRMDPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + +TP+ + E + +++ Sbjct: 339 PDEFIKNLGAEAFEQRIGKARNGFMFSLEILERQYDMHTPEGKTEFYYEAAKRLAQFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A+ + + + K A P R + + + Sbjct: 399 IERNNYIDAVAEAYHIGYDSLRKLVA-------KAAVQSGMASPVARPRTTHAKEQQKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL +I ++ + + + + + L+ + E+ P +I Sbjct: 452 GMLQSQKILLTWMIEDESLFGMIRKYIMPEDFTTELYRTVALLLYEQY-EKGEVNPAKIM 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-------------ALALY 585 + + L + E + + ++ + Sbjct: 511 NHFTDEEEHREVAALFHTKIRELTTKSEQEKALKETIIRVKENSIETATRNLEPTDIVGL 570 Query: 586 KRFRLLSRQKEEIEK 600 +R R ++++K Sbjct: 571 QRLMESKRAVQDLQK 585 >gi|229013515|ref|ZP_04170649.1| DNA primase [Bacillus mycoides DSM 2048] gi|228747752|gb|EEL97621.1| DNA primase [Bacillus mycoides DSM 2048] Length = 600 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 276/632 (43%), Gaps = 42/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116 ++CF C G+ SFL + G +F E+VQ+L G+ + ++++ Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYKSGQGQQQQEDISDDTVI 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + E+ ++HH L YL +RGI IE F++GYA + + + L++ Sbjct: 119 MQQAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASQAWDAATKILQK 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S + +AGLL+ + + YDRFR R++FPI + +G+VIAF GR L ++ KYLN Sbjct: 179 RGLSLSSMEQAGLLVRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K K LYNF A +++K ++L EGY DVL+ ++GV+ V Sbjct: 238 SPETPIFYKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 ATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ YG TAFE L+ S+ V ++ + E + ++ + Sbjct: 345 KLDPDEYVQQYGTTAFENLVKSSISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLL 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +D Y +++ + + + Y + K + Q +++Q+ Sbjct: 405 QDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQT----KP 460 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E ++ ++ + + + E + + L++ + + Sbjct: 461 KLTGFERAEREIIYHMLQSAEVTVRMEPHIE--DFYTEEHKGILYELYAYYEKGNEPSVG 518 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + ++ + + E ++ + AL + L + Sbjct: 519 TFLSWLSDEKLKNIITDI------STDEFINPEYTEEALQGHLE---ALRRHKEKLEKM- 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 EI ++ Q+ E ++ L + Sbjct: 569 -EIIFKVKQMEKTNPVEAAKYYVAYLQSQKAR 599 >gi|268316540|ref|YP_003290259.1| DNA primase [Rhodothermus marinus DSM 4252] gi|262334074|gb|ACY47871.1| DNA primase [Rhodothermus marinus DSM 4252] Length = 619 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 175/639 (27%), Positives = 288/639 (45%), Gaps = 41/639 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + I+ + + I ++G+YV RR N ++ CPFH+EKTPSF N G Sbjct: 1 MRIPEETIEAIRTAVDIVEVVGEYVSLRRRGAN-----WFGLCPFHEEKTPSFSVNPHLG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C GD +F+ + SF+E+V+ LA AG+PLP E+ + + L Sbjct: 56 IFKCFGCGRGGDVFAFIQQIEHVSFVEAVRMLAERAGIPLP---DGEEEADDPRPALYHA 112 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L ++ + YL +RGI A+ F LGYAP++ +L + + G Sbjct: 113 LRFAARFYFEQLTQSEAGQVARAYLKQRGIHPEAVRRFGLGYAPNAWDALLKAATEAGIR 172 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238 E + +AGL++ YDRFR+RL+FPI S G+V+ FGGR L E KY+N+PE Sbjct: 173 PEVLEQAGLVLPRKERGGYYDRFRHRLMFPIFSHTGRVVGFGGRLLEPDPEQPKYINTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++HKG+ LY + A L+ + ILVEGY DV++L QAG+++VV++ Sbjct: 233 TPVYHKGRILYGLYQARQALR----------TQEEAILVEGYTDVIALHQAGIEHVVATS 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RLL + R+VL FD D G +AA ++I+L L G V V L GED Sbjct: 283 GTALTPDQARLLARYVRRVVLLFDADAAGQQAALRSIEL---FLERGLNVYVVSLPPGED 339 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDSF+R G AF++ L V ++ +TP+ AE+ + + I + D Sbjct: 340 PDSFVRAKGARAFQEYLRQRRRDFVTFHYELARRQGRLDTPEGEAEVARTIVSAIARLPD 399 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + + L+ + + + A S Sbjct: 400 PLLREPYVRRAAELLRIQQVRLLEILEAQLTPSSREAPPPAPS---------PSTPPPTS 450 Query: 478 KKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E L+ ++ ++ +A + ++L + L + Sbjct: 451 PTWHEAERLLVRLMLEEGRPMVAFVLGHMALEEFTEGPPRQLIARLLEQYEAGAVDARPF 510 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--LSRQ 594 + R ++ L + W + + Y+ A R +L + Sbjct: 511 LEGRYGPEVQRLTVEALMEPYEPSENWERKGISVPRLRDRAYEAAADAMVRLKLQRIDEM 570 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH---EVHIQIHQ 630 ++++ Q+ + + + +I+ L+ ++ QI + Sbjct: 571 IHRLKEE--QLRTRHDEARVREIIARLNHILQLRRQIER 607 >gi|166030948|ref|ZP_02233777.1| hypothetical protein DORFOR_00629 [Dorea formicigenerans ATCC 27755] gi|166029215|gb|EDR47972.1| hypothetical protein DORFOR_00629 [Dorea formicigenerans ATCC 27755] Length = 591 Score = 362 bits (929), Expect = 1e-97, Method: Composition-based stats. Identities = 148/615 (24%), Positives = 260/615 (42%), Gaps = 38/615 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + ++++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYPEELVEEIRSKNDIVDVISSYVRLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118 YYCF C G+ +FL SF+E+++ LA AGV L P + +K+ + L+ Sbjct: 56 MYYCFGCGAGGNVFTFLMEYEHYSFVEALKYLADRAGVELPEPEYSGEAKKRADTKAILL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A +F+ L + YL +R + I+ F LGY+ L ++L+ KG+ Sbjct: 116 EINKAAAQYFYVQLLRPQGGHALTYLKDRKLSDDTIKAFGLGYSNKYSDDLYKYLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ I +AGL I D +D+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 KDDMISQAGL-ISIDEKYGVHDKFWNRVMFPIMDVNSRVIGFGGRVM-GDAKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K +NLY A + + +L EGYMDV+SL QAG N V+SL Sbjct: 234 TIIFDKSRNLYGLNRARKSRK------------PYFLLCEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A + G + + +D Sbjct: 282 GTALTPGHAALIKRYVNEVYLTYDSDEAGTKAALRAGPI---LREVGITAKIIRMEPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + + +P+ R + + ++ Sbjct: 339 PDEFIKNLGAEAFEERIQKARNGFMFSLEILERDYDMTSPEGRTDFMKEAARKLTEFDEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A+ + + A P +R + Sbjct: 399 IERNNYIDAVAGTYHVGSEDLKKLVG-------RMAVQTGLAKPVERPRSTRSQNLDKED 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL + + + + + + + + + L++ EQ P +I Sbjct: 452 GTRKSQKILLTWMASDENVFAQIQKYIHPEDFQEGIYRTVAELLYAQ-HEQGKLNPAQIM 510 Query: 539 QRLCER----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-- 592 + L R+++ A + I+ V++ + + + Sbjct: 511 NHFTDEEEHREVAALFNTRIREIKTAHEQEKALKETIIRVKKNSIEEHSAKLDPTDIQGL 570 Query: 593 RQKEEIEKQIAQVTA 607 ++ E ++ + + Sbjct: 571 QKLMEAKRALQDLEK 585 >gi|291542494|emb|CBL15604.1| DNA primase, catalytic core [Ruminococcus bromii L2-63] Length = 588 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 156/636 (24%), Positives = 281/636 (44%), Gaps = 55/636 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F++DL + I++++ YV+ RR N CPFH EKTPSF+ G Sbjct: 1 MAFPESFLQDLKMRNDITDVVSGYVNLKRRGRN-----MVGLCPFHGEKTPSFNVYTENG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C V GD +SF+ + ++++V+ LA AG+ +P +++ + Sbjct: 56 SFYCFGCGVGGDVISFIMKIENLDYVDAVKYLAQRAGLEMPENSYDDS-MSRLRNRVFEA 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F++ +L + + ++ Y R + I F LGYA D+ SL HL+ KGF++ Sbjct: 115 NREAARFYYAALCSPQGRKGLDYFHSRALSDRTIRHFGLGYADDNWSSLCNHLKSKGFND 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ A L + N YDRF +R++FPI RG VIAFGGR + KYLN+ +T Sbjct: 175 SELVAANLAVRHRNGNGIYDRFTDRVMFPIIDLRGNVIAFGGR-IMSDAKPKYLNTSDTP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K NL++ A N ++ +IL EGYMDV+++ QAG N V++LGT Sbjct: 234 VFKKSANLFSLNNAKNSGKR------------TLILCEGYMDVIAVNQAGFTNAVATLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q L+ + + +++C+D D+ G +A +AI + G V + + G+DPD Sbjct: 282 ALTGEQAVLMKRYADEVIICYDADEAGQKATARAIPI---LRNSGLNVKVLTIPSGKDPD 338 Query: 361 SFIRCYGKT---AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 FI+ G AF+ L+ + V+ ++ + + + I I Sbjct: 339 EFIKSKGNDGPAAFKALLDKCGNDVEYRLQKLKNAHNIQLTEGKVAFLEEAAKLIATISS 398 Query: 418 QKLRYYYSQAIRDRLQQL---FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 R YS + L F++ ++ S G ++ + R + R + Sbjct: 399 PIERDVYSSKVASELGVDKNAFKQQVSRVSRRGERAEEKKQARQIQLELSRRNDKINPEH 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + S E ALL+ L+N+P +E + ++ N +++ + + + + L Sbjct: 459 FQKPRSSSAEEALLVYLLNNPDAYEEISARVKPEQFQNTLMRRFFEYFSARIERGEDPLT 518 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + A A+ + Y + Sbjct: 519 NTAADFTQDENSK----------LYQLMSQAIPGASTAEAMNEYINVIN----------- 557 Query: 595 KEEIEKQIAQVTAKGEAEKT-AILISILHEVHIQIH 629 ++ +++ + A+ + L++ L ++ + Sbjct: 558 -----EESSKLNSGDLADVSNEELMAYLDKIRKKKQ 588 >gi|85708549|ref|ZP_01039615.1| DNA primase [Erythrobacter sp. NAP1] gi|85690083|gb|EAQ30086.1| DNA primase [Erythrobacter sp. NAP1] Length = 617 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 296/631 (46%), Gaps = 32/631 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + +L I +S++I + R ++ ACCPFHDEK+PSF+ ND K Sbjct: 1 MAITPQWKDELRARITLSSVIMRTTKLTRAGR-----EWKACCPFHDEKSPSFYVNDQKS 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD +S+++ G SFI++ + LA+ AG+ +P DP K+ + + +L+ + Sbjct: 56 FYHCFGCGAHGDVISWMTEQRGLSFIDACKELASEAGMEVPAPDPVAAKRAEKRAELVDV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++F +L+ + YL +RG+ + F GYAP+S+ +L L + Sbjct: 116 TTEAQEWFVQNLREEVGREALDYLKKRGLKPETLREFGFGYAPESKQALPNALPRFEDQM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239 + + T+YDRFR R++ PI+ +RG+VIAFGGR L K E KYLNSP+T Sbjct: 176 LVETG---MRIRTDDGTTYDRFRGRVMLPIQDTRGRVIAFGGRILGKREGVAKYLNSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KG+NLYN A ++S R +I+VEGYMDV++L QAG ++ V+ +G Sbjct: 233 PLFDKGRNLYNIHRAAPASRQSGR----------VIVVEGYMDVVALAQAGFEDAVAPMG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE QL +LW++ VLCFDGD G +AA +AI L L P + V L G DP Sbjct: 283 TALTEMQLEMLWRMVEVPVLCFDGDAAGQKAAMRAIGRALPLLAPMRSLGIVTLPTGLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D I G A EKL+ + + L+D LW+ E + + +P+ +A L+ L ++ I+D+ Sbjct: 343 DDLINEQGPGAMEKLLAQPMSLLDFLWQAERDAQPLASPEAKAGLKARLMAHVDTIEDRD 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ Y + + DR + + + +S+L + + Sbjct: 403 IQALYRRELLDRFSAFAFPPREPRQRQQKGAWQ--SFKAVPKGLSPEARSTLQRAMGGGQ 460 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++A++ LI P ++ + L + + + L P I Sbjct: 461 RAGFQSAVIAGLIRFPEEIERHSEALTRLARLDPDAAPAIESLIELSETLDSQAPSAISD 520 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R + D + R+ +A++L + L Sbjct: 521 R----------QGHPAPPEDQRFAFLRKGTPPGEAREELAEAVSLLAQKPALEAAMAATI 570 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + +G + A L L V ++ Sbjct: 571 ARFDE-DPEGSFAEQARLREQLTTVEERLKA 600 >gi|225570456|ref|ZP_03779481.1| hypothetical protein CLOHYLEM_06557 [Clostridium hylemonae DSM 15053] gi|225160653|gb|EEG73272.1| hypothetical protein CLOHYLEM_06557 [Clostridium hylemonae DSM 15053] Length = 589 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 153/633 (24%), Positives = 269/633 (42%), Gaps = 51/633 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I ++I YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MYYSDDLIEEVRAKNDIVDVISGYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSRQKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118 YYCF C G+ +F+ +F+E+++ LA AGV LP D E ++K ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYTFLEALRYLAERAGVELPEQDESEESRKKAGVRSTLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A F++ LK+ R + YL +R + I F LGY+ S L +L+ KG+ Sbjct: 116 EINKLAAQFYYAQLKDPRGEHALSYLKQRELSDETIRAFGLGYSGKSGKELYRYLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ + +AGL I + + YD+F NR++FPI + +VI FGGR + KYLNSPE Sbjct: 176 SDDILFKAGL-IAFNEKSGPYDKFWNRVMFPIMDANSKVIGFGGRVM-GDGQPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + +L EGYMDV+SL QAG N V+SL Sbjct: 234 TMIFDKSRNLYGLNRAR------------TFRKPYFLLCEGYMDVISLHQAGFGNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A + G + + +D Sbjct: 282 GTALTSGHASLIRRYVEEVYLTYDSDEAGTKAALRAAPI---LKEAGITARVIRMEPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + + TP+ + E + ++ Sbjct: 339 PDEFIKNMGAEAFEERIGKARNGFMFGLEVLEKQYDMKTPEGKTEFMREAATRLTEFDEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ K S R ++ +VK Sbjct: 399 IERNNYIEAVAGAYHVGYEDLRKLVGRMAVQKGLAKPVVRAKTASGREKENGIVKS---- 454 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI I ++ + + + + + L+ + E P ++ Sbjct: 455 -----QKILLTWLIEEETIFRQIEKYIKPSDFTGELYRTVAQLLYEQY-EAGEVNPAKLM 508 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + L + E + ++ + + + + + Sbjct: 509 NHFTDEEEHREVAGLFH--------TKIKELSTAAEQEKALKETVMRVKSHSIEEATHNL 560 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E + + L+ + + ++ Sbjct: 561 E--------PADIQGLQRLMEDKRALQ-DLEKL 584 >gi|37527833|ref|NP_931178.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787269|emb|CAE16350.1| DNA primase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 581 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 165/635 (25%), Positives = 289/635 (45%), Gaps = 67/635 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRAFINDLLARTDIIDLIDVRVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELAAMHGLEVPYEAGSSHSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ + L ++ YL +RG+ I F +G+AP + + Sbjct: 119 LMDKLNSFYQNVLNTPAAQQARQYLAQRGLSEEIIHRFSIGFAPAGWDNTLKRFAHNEED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RRQLNDAGMLV-ANDNGRTYDRFRERIMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHSDLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLLFRATDNVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R G+ AFE+ + +S L + L++ + P+ + +L IN I + Sbjct: 347 DSLVRKEGRKAFEQRMEQSHTLSEFLFESLLPQVDLSNPEGKTKLSSLSVPLINQIPGEV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + + + + N + K + Sbjct: 407 LRLYMRQELGNMMGIPDAVQLERLLPQHLESGNNYQMPQLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ-------YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L+ L+ +P + ++A + L+ L + Q Sbjct: 452 -----RILIGLLVQNPHLAALVPPLQGIMQAKIAGLP--------LFMELVEVCLTQPGL 498 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ ++ + F + L++L + + ++ + + + L Sbjct: 499 TTGQLLEQYRDNKFSKQLEKLATW----------NDIQVEEIAENTFRDALDHLVDSALE 548 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + IA+ +G + + +++E + Sbjct: 549 ERLDIL---IARARTEGLTPEEREEVRLINESRAR 580 >gi|317473636|ref|ZP_07932925.1| DNA primase [Anaerostipes sp. 3_2_56FAA] gi|316898926|gb|EFV20951.1| DNA primase [Anaerostipes sp. 3_2_56FAA] Length = 585 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 160/608 (26%), Positives = 278/608 (45%), Gaps = 33/608 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+++ I +LI YV R+ + Y+ CPFH+EK+PSF + K Sbjct: 1 MLYGDDIIEEVRSRNDIVDLISSYVPLKRKGS-----SYFGLCPFHNEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F E+V+ LA AG+ LP + +++ + L Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENFTFPEAVRYLAERAGMELPEQELSAEAKQQADAKVQLK 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A ++F+ L + R ++ YL +RGI I+ F LGYA + L L+ KGF Sbjct: 116 EMNKMAANYFYILLHSKRGEKGLAYLTKRGITGETIKKFGLGYADIYQDDLYRFLKSKGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E++ ++ L+ + S D+F NR++FPI+ +VI FGGR + S KYLNS E Sbjct: 176 SDEELKDSALVTIDEARGGS-DKFWNRVMFPIQDVNSRVIGFGGRVM-GDGSPKYLNSRE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + FIIL EGYMDV+S+ QAG N V++L Sbjct: 234 TKLFDKSRNLYGLNFARSS------------REKFIILCEGYMDVISMHQAGFTNAVAAL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA TE LL + + ++L FD D+ G RA +AI + G V + L+ +D Sbjct: 282 GTAFTEGHGMLLKRYTNEVILSFDSDEAGQRAILRAIPI---LKGAGLTVRVLDLTPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G + I ++ + + P+E+ + + ++ I++ Sbjct: 339 PDEFIKELGSEELKNRIQKARSSFMFQISVAAGKYNQDDPEEKTKFQHEAAKLLSGIREP 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ YG Q+ P ++ + + VK + + Sbjct: 399 LERNNYCEAVSREYFMGVKELKDLVEYYG------TSGYVQEKPKEQERRPAEVKKEEKR 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + LL L+N P + Q+ + + LF ++ +P +I Sbjct: 453 QEP--QKLLLTWLVNEPVLFQKLAGIIGPDDFIEPIYHGAAMLLFEEYERDGKVMPAKIL 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EE 597 + + + + +L + + D+ + ++ +K K +E Sbjct: 511 NQYTDMEDQKKIAELFNTTLKLKPLPEDNDKALTDIVRKVKEDSIEHKMNESNDIMKWQE 570 Query: 598 IEKQIAQV 605 + ++ ++ Sbjct: 571 LIQEKGRL 578 >gi|219871371|ref|YP_002475746.1| DNA primase [Haemophilus parasuis SH0165] gi|219691575|gb|ACL32798.1| DNA primase [Haemophilus parasuis SH0165] Length = 582 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 178/625 (28%), Positives = 292/625 (46%), Gaps = 54/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C V G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGVHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENVINRDGKPQASYKTRRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+++ F+ L + YL +RG+ I+ F++G++P++ ++ Sbjct: 119 LYELLDLVAKFYQQQLTQDSASQA--YLQQRGLSQEIIDRFEIGFSPNAMDAVLRRFGNN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +K+++ G+L D YDRFRNR++FPIR RG+VIAFGGR L E KYLNS Sbjct: 177 PEEVQKLLDTGMLSKNDRG-NVYDRFRNRVMFPIRDKRGRVIAFGGRVL-GDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +HKG LY + AL + + F+ +VEGYMDV++L Q GV N V+ Sbjct: 235 PESATYHKGNELYGLYQALQH----------NENPDFLFVVEGYMDVVALAQFGVNNAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++L+++ + +++ C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQLMFRSTEQVICCYDGDRAGRDAAWRALENALPYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+FIR GK FE+ + ++L L + L+ +T + +++L I I Sbjct: 345 EDPDTFIRSQGKEGFERYLEQALTLSEFLFDSLLTQVDLSTKEGKSKLASLALPLIKRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + RH + Sbjct: 405 GEMLRLYLRNILGQKLGILDPTQLEVMLPQKSVETAPKRHNMPHIERTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P ++Q +++ ++ + L+ L + Sbjct: 455 --------RLLIALLLQNPHLVQNVPEDVTFLQSLQEKGFDLFLELVNICHANLGISMGG 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + L E L+ L + +V + L + + +LL RQ E Sbjct: 507 VLEHLRESPNYRHLELLANWDHLV---------SSENVENTFIDTLDFFYK-KLLDRQIE 556 Query: 597 EIEKQIAQVTAKGEAEKTAILISIL 621 + + T ++ L+ +L Sbjct: 557 ILMAK--DRTTGLNQQEKQELMMLL 579 >gi|121638231|ref|YP_978455.1| DNA primase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990725|ref|YP_002645412.1| putative DNA primase [Mycobacterium bovis BCG str. Tokyo 172] gi|121493879|emb|CAL72354.1| Probable dna primase dnaG [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773838|dbj|BAH26644.1| putative DNA primase [Mycobacterium bovis BCG str. Tokyo 172] Length = 639 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 142/653 (21%), Positives = 251/653 (38%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 4 RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ L+ Sbjct: 60 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D+ A F G+AP SL +HL++KGF Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 E++ AGL DRF RL++PIR+S G+V+ FG R L +++ KY+N+P Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L +L +L ++ FDGD+ G AA KA D + Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ PL + + ++ + R Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461 + IKD LR Y++ + + + K+ R R + Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P+ V+ + L + + +PA+ + L + + E + + Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + ++ + L ++ + D Y Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + L RQ E++ ++ +++ + ++ L L + + Q Sbjct: 579 VLARLQEVWLRRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631 >gi|325920513|ref|ZP_08182438.1| DNA primase [Xanthomonas gardneri ATCC 19865] gi|325548996|gb|EGD19925.1| DNA primase [Xanthomonas gardneri ATCC 19865] Length = 584 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 169/636 (26%), Positives = 273/636 (42%), Gaps = 60/636 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATQFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L K + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + GR + S Sbjct: 405 PEGAFGDLMRQELSRLTGVGASTSTQTSTPQGRPRPPARMGAPTQKRSLVRAS------- 457 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + + L L + ++ Sbjct: 458 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIDLLME-LLALVRQRPEISTG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L QV + +LL ++ Sbjct: 505 ALLEHFAEREEQAALQKLAAQVLPGD----------EHSWAMELHDVVAQLDKQLLRQRL 554 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +E++ + + + +K L E+ + + Sbjct: 555 DELQDK-QRAQGLDDTDKY-----ELRELFKALAAL 584 >gi|29832219|ref|NP_826853.1| DNA primase [Streptomyces avermitilis MA-4680] gi|29609337|dbj|BAC73388.1| putative DNA primase [Streptomyces avermitilis MA-4680] Length = 632 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 151/652 (23%), Positives = 272/652 (41%), Gaps = 43/652 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDEDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTITFVMKVDHLTFSEVVERLAAQAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++A F+ L + +L ERG D A F +GY+P L +LR KGF Sbjct: 120 AHKIAAQFYIEQLDTGSEADTGRKFLAERGFDQAAAAHFGVGYSPQGWDHLTRYLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 ++++++ +GL + DRFR RL++PIR G V+ FG R L + ++ KYLN+P Sbjct: 180 TDKELLLSGL--SQEGRRGPIDRFRGRLMWPIRDIGGDVVGFGARKLYESDNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ K + LY A + K R ++VEGY DV++ AGV +++ Sbjct: 238 DTAIYRKSQVLYGIDLAKKDIAKVSRA----------VVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 CGTAFGTDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A L+ PL + ++ TP RA + Sbjct: 345 APDGMDPCELRLAKGDEAVADLVEPRTPLFEFALRQIVARYDLETPAGRAAALDESAPIV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL- 471 IK+ ++ + + L L +++ + W ++ + QR QS Sbjct: 405 ARIKNSGAQHEVAVQLAGMLGILDTQFVVKRVSQLARWARDRGGKGPAPAQQRPQQSYAA 464 Query: 472 ------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E LL + P ++ + + + + + Sbjct: 465 VQVPSGPALHLRNPVYATERELLKLALQRPELVSPAFDAYGIDEFTAPQYAAVREAIIEA 524 Query: 526 -FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E P+E R+ E + ++ + ++ + T + + Y + Sbjct: 525 GGAEYGVQDPQEYLVRVREVAPDDTVRAMVTELAVEAIMRRTVD-------EAYAGDQLV 577 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R R + R+ E++ +A+++A G+ + A + + L + + + A Sbjct: 578 TVRRRAVERRVREVQGSLARLSAGGDPAQLAAVQNELWVLQQYDQALRERGA 629 >gi|331269993|ref|YP_004396485.1| DNA primase [Clostridium botulinum BKT015925] gi|329126543|gb|AEB76488.1| DNA primase [Clostridium botulinum BKT015925] Length = 596 Score = 362 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 164/633 (25%), Positives = 282/633 (44%), Gaps = 40/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I ++I + V R N + CPFH+EKTPSF ++ K Y Sbjct: 2 ISEEIIEKIKEQNNIVDVISESVKLKRTGRN-----FIGLCPFHNEKTPSFSVSEDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ +F+ SFIE+V+ L + + D K + + L ++ Sbjct: 57 KCFGCGEAGNVFTFVMKSRNLSFIEAVKYLGDKVNIHIEENDEKNKIHKNKNDKLYKINV 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A ++ +L+ + K Y ++RGI + + F LGYAP +++ L++KG++E Sbjct: 117 EAARYYFRNLQTS--KEATDYFEKRGILNKTLRRFGLGYAPSGWHNIMNFLKKKGYTELD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G + + YDRFRNR+IFP+ +G+VI FGGR L KYLNSPET +F Sbjct: 175 LLNAGLIIKG-KNNSLYDRFRNRVIFPVFDYKGKVIGFGGRVL-DDSKPKYLNSPETDIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + II+VEGYMD +SL Q GV NVV+SLGTAL Sbjct: 233 KKGTNLYGLNFAIKDNNR------------TIIIVEGYMDCISLYQYGVTNVVASLGTAL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + +I++ +D D G A + + + G + + + G+DPD F Sbjct: 281 TYDQAKLLKRYADKIIVSYDADFAGQNATMRGLKI---LKKQGFDLKVLDIPDGKDPDEF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +GK AF KLI ++LPLVD K + + + IN + + + Sbjct: 338 IKNHGKDAFMKLIDDALPLVDYEIKMAKYGLDITNEEMLMKYVNNACKIINKL-NPIEKD 396 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + ++ R K + K + Sbjct: 397 IYIRKLSQETRLKEQAIYDLLNANTSKNYPKSQQRYTKENFGQ-------KLYIEPAYMK 449 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ + + +++ + + +K++ + + + + + + Sbjct: 450 TQRNLIKIMTLNIDNYGYVIDTVSEKDFIIDSHKKIFKLIKEEVSQN----IDNLKKIYK 505 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 R+ + + ++ Y + + +K L KEEI K+I Sbjct: 506 SIEMKCDDVGSSREWIKIQQVQLDDDVDCKELVDAYIKEIKKFK----LEESKEEIMKKI 561 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 A+G E++ L+ L + I + + E Sbjct: 562 KYYEAQGLFEESLNLVKELESIQNNIMAMNNCE 594 >gi|317132027|ref|YP_004091341.1| DNA primase [Ethanoligenens harbinense YUAN-3] gi|315470006|gb|ADU26610.1| DNA primase [Ethanoligenens harbinense YUAN-3] Length = 583 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 152/605 (25%), Positives = 270/605 (44%), Gaps = 30/605 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 F++++ I +++ +YV+ + CPFH EKTPSFH + Sbjct: 2 ISEAFLQEMKDRCDIESVVSRYVNLRKSGK-----SMVGLCPFHSEKTPSFHVYPDDQHF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F+ + + E+V+ LAA AG+ +P P + + + ++ + Sbjct: 57 YCFGCETGGDVITFIRKIENLEYREAVEFLAAQAGLTVPDDAPGAQAASRERARILEMNR 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FFH L + + K Y ++RG+ H I F LGYAPD L +L+Q+GF + Sbjct: 117 AAARFFHECLISPQGKEGLAYFEQRGLSMHTIRSFGLGYAPDGWNHLLGYLQQQGF-RPE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + AG L + YD FR+R++FPI RG V+AFGGR L KYLNS +T F Sbjct: 176 ELAAGALALRGRNGGYYDAFRHRVMFPIIDLRGNVVAFGGRVL-DDSKPKYLNSNDTPAF 234 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK K L+ A N +IL EGYMD ++L QAG +N V++LGTAL Sbjct: 235 HKSKCLFALNFAKNS------------GGRSLILCEGYMDAIALHQAGFRNAVATLGTAL 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q+RL+ + + +V+ +D D G A+ +AI L G V + + G+DPD F Sbjct: 283 TPEQVRLMARYAKEVVISYDADKAGQNASQRAIGL---LTQAGLAVRVLRIEGGKDPDEF 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR +G F L+ S ++ + + + +++A + ++ R Sbjct: 340 IRTHGADRFRMLLEHSGNHIEYRLASALQKYNVDITEQKAAYLKEAVEILATVESMVERD 399 Query: 423 YYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y+ + + L + + + + +K AR R++ + + + + + Sbjct: 400 VYAGKLAETLGVSKENVLADAAALRAKRQGREKKARVREEIAAAHGMKDRVNPEKRANLL 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E L++ L +P L+ + + +++++ L + + Sbjct: 460 AARAEENLIVLLYRNPDFLKRMDNLIRPEDFVTAFNRRVYTALREQAIAGGEPDLSALGA 519 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKE 596 + G++ L + + L A A + V + + + + + + Sbjct: 520 QFSADEMGKITGLLHKTLVSDTLQEAHDCAAVLLKEQVNRRAAEQQDAQAAYDAI--RVK 577 Query: 597 EIEKQ 601 ++E+Q Sbjct: 578 KLEEQ 582 >gi|160937107|ref|ZP_02084470.1| hypothetical protein CLOBOL_01997 [Clostridium bolteae ATCC BAA-613] gi|158440008|gb|EDP17756.1| hypothetical protein CLOBOL_01997 [Clostridium bolteae ATCC BAA-613] Length = 608 Score = 361 bits (927), Expect = 2e-97, Method: Composition-based stats. Identities = 145/631 (22%), Positives = 264/631 (41%), Gaps = 44/631 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ + I ++I YV ++ N Y+ CPFH+EK+PSF + K Sbjct: 1 MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGAN-----YFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ ++FL +F E++ LA AGV LP + ++ ++ L+ Sbjct: 56 MYYCFGCGAGGNVITFLMEYENYTFQEALSSLADRAGVNLPKMEYSREAREQADLRARLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + ++A ++F++ +K + K + Y +RG+ I F LGY+ + L +L+ KG Sbjct: 116 EVNKLAANYFYYQMKQPQGKAAYDYFHLKRGLADETIVHFGLGYSNKTSDDLYRYLKGKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + + + + GL+ + D+F NR++FPI +VI FGGR + KYLNSP Sbjct: 176 YEDSFLKDTGLVTLEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K +NLY A + ++++ EGY+DV+SL QAG N V+S Sbjct: 233 ETKLFDKSRNLYGLNYAR------------LSREGYLLICEGYLDVISLHQAGFTNAVAS 280 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T +L + + +++L +D D G++AA +AI + G + + + + Sbjct: 281 LGTAFTSQHANVLKRYTDQVILTYDSDGAGVKAALRAIPI---LKEVGMSIKVLNMKPYK 337 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AF + I E+ + P+++ + + Sbjct: 338 DPDEFIKNMGAEAFRQRIREAKNSFLFEVDVLRRGYEMDDPEQKTRFYQETARKLLQFGE 397 Query: 418 QKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 R Y QA+ +R+ E + ++ G S Sbjct: 398 ALERENYLQAVAREQMIPAEELRGLVNRMGMSMGLKAGESLNHSGRVVPQETQEEESGGS 457 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + LL LI PA+ ++ + + N ++ +F Sbjct: 458 GLSGSRKPRRPDKEDGIRRSQRLLLTWLIETPALFEKIEGIITADDFVENLYHQVAQMVF 517 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGYQ 579 E + + + + + + L L + + + VR+ Sbjct: 518 DGHREGNLNPAAILSRFINDEDQYKEVAALFNASLKESLNNEEQKKAFSETVMKVRKNSL 577 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + + ++ + + Q+ + Sbjct: 578 DVASRNAKDITQLQEIIRQQAALKQLHISLD 608 >gi|313892964|ref|ZP_07826541.1| DNA primase [Veillonella sp. oral taxon 158 str. F0412] gi|313442317|gb|EFR60732.1| DNA primase [Veillonella sp. oral taxon 158 str. F0412] Length = 590 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 276/631 (43%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I ++I ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVISEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L +F+E ++RLA A +PLP P+ +++ + L Sbjct: 60 YCFGCHASGNVIKFLMELEHLTFVEVLERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A FFH+ L + + K YL +RG+ IE FKLG+APD L ++G Sbjct: 120 CDLAATFFHNCLTQTSMGKVGLDYLKKRGLTKETIEQFKLGFAPDGWDKLYRAFHERGID 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 SIFEKGKILFAFDKAYKSIR----------QERQAILVEGYMDVISAHNHGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 288 TAYTRDHGHILMRQADEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF+ L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGQAFKDLVAKAMKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L KG K Sbjct: 405 QRDDALKTLALPLWLDNSSIFR----YFRDYVKKGQIELVDTASAPLPTQDLPKGDAEK- 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL IL L + +E + + +FS + + + I Sbjct: 460 -------LLSLAFTDGEILSHMMSYLPIEDFQKSEYRCIIEKIFSLYKTEGHLDETAIQS 512 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + ++S + + + + R L Q + Sbjct: 513 VLTPSEYD--------------IYSRLVVMSDDEYKVQVPGLIR-KIRLHSLREQYKAHS 557 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587 >gi|308069923|ref|YP_003871528.1| DNA primase [Paenibacillus polymyxa E681] gi|305859202|gb|ADM70990.1| DNA primase [Paenibacillus polymyxa E681] Length = 623 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 282/632 (44%), Gaps = 39/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P D I+ +L H I + + +YV ++ CPFH EKTPSF + Sbjct: 25 NIPDDIIESVLQHHDIVDTVSKYVHLTKQGK-----YMKGLCPFHSEKTPSFTVTPDRQI 79 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120 +YC+ C G+ + F+ + G SF E+V+ +A + +PL + + + L++ Sbjct: 80 FYCYGCGAGGNAIKFMMEIEGLSFPEAVRTMAEESHIPLGEWQGRDSSHQHPELNRLLQA 139 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ + +H LKN K YL RG I+ F++GYAP+ ++ + L ++ F Sbjct: 140 YELTSKMYHFLLKNTEHGKPAMEYLRSRGFSDKIIDQFQIGYAPNRWDTIVQFLEKRSFD 199 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ + GL+ DRFR+R++FPI + G+VIAF GR L +G+ KYLNSPET Sbjct: 200 PVEMEKGGLISPRHEGDGYVDRFRDRIMFPIWNRNGKVIAFAGRILGEGQP-KYLNSPET 258 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF+K + LYN A ++K +L EGY DV+S +AGVQN V+++G Sbjct: 259 KLFNKSRTLYNLHHAKTSIRKL----------RQSVLFEGYGDVISAWEAGVQNGVAAMG 308 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE+ +L L +++C+DGD G AA K L G V L+S G DP Sbjct: 309 TALTEHHATMLKGLCDEVIICYDGDRAGQAAALKNFPL---LENAGLHVKVALVSDGMDP 365 Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D FIR YG F+ ++I ++ V +N + R N I + Sbjct: 366 DDFIRQYGGERFQRQIIESAVSTVKFKLIYLKKNHILQEEEGRIAYSREALNVIAPLSSP 425 Query: 419 KLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + ++ F+ E + + + + + R + +VK Sbjct: 426 TEREVYLREVSAEVKVDFETLKQECNLLRQSLQKKQNFGDNNENGWNNGRHKKGQIVKPN 485 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + E LL ++ Q + L D ++ + + ++L++ + + K Sbjct: 486 VMPAYHVAERRLLHWMMQDVETAQYVEKHLGD-AFNIEDHAAIAAYLYAYYAQGKLPDTS 544 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + +L++ V + A + + + QQ R L +Q Sbjct: 545 RFISSLQD-------DRLEKNVSSIMMMDA-PDVSPHVLDDCIQQV-----RKFSLEKQL 591 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++ G+A + A ++ + + Q Sbjct: 592 DLKREEMRAAERSGDALRAAQIVIEIIALERQ 623 >gi|294793988|ref|ZP_06759125.1| DNA primase [Veillonella sp. 3_1_44] gi|294455558|gb|EFG23930.1| DNA primase [Veillonella sp. 3_1_44] Length = 597 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 278/631 (44%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 12 FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L +F+E+++RLA A +PLP P+ +++ + L Sbjct: 67 YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 126 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A FFH+ L + + K YL +RG+ IE FKLG+APD L +G Sbjct: 127 SDLAATFFHNCLTQTSIGKVGLDYLKKRGLTQATIETFKLGFAPDGWDKLYRAFHDRGID 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 187 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 245 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 294 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 295 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 351 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 352 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L +G K Sbjct: 412 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPRGDAEK- 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL + +LQ L ++ E + + LF+ + + I Sbjct: 467 -------LLSLAFTNGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 519 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + D + AL R L Q + Sbjct: 520 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 564 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 565 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 594 >gi|312196070|ref|YP_004016131.1| DNA primase [Frankia sp. EuI1c] gi|311227406|gb|ADP80261.1| DNA primase [Frankia sp. EuI1c] Length = 643 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 150/654 (22%), Positives = 256/654 (39%), Gaps = 44/654 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + I ++IG++V G+ CPFH+EKTPSF+ S G Y Sbjct: 5 IRDADIALVRERARIEDVIGEHVQLRPAG----GGNLRGLCPFHEEKTPSFNVKPSTGVY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 YCF C GD + F+ A+ G SF E+++RLA AGV L + + L+ Sbjct: 61 YCFGCQQGGDVIGFVRAIDGLSFPEAIERLARKAGVTLTYEGGGTTNRSVTSQRQRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F+ L A + +L RG D+ F +GYAP L HL + F+ Sbjct: 121 HRAAAQFYAEHLSTAPARAGWDFLAARGFDAEVAGHFGVGYAPQGWDELSRHLLARRFTA 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKYLNSP 237 E+++ GL G DRFR+RL++PIR G V+ FGGR L+ + KYLNSP Sbjct: 181 EELVLGGLAKQGTRG-GLVDRFRHRLLWPIRDLSGDVVGFGGRRLAADDEKAGPKYLNSP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K LY A + + +++VEGY DV++ AGV V++ Sbjct: 240 ETPLFKKASLLYGADLARREIARRY----------QVVVVEGYTDVMACHVAGVTTAVAT 289 Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + ++ + ++ FDGD G +AA +A + + + Sbjct: 290 CGTAFGSDHVGVIRRLLWDSDAQRGEVIFTFDGDAAGQKAAMRAFEHEERFVT---QTFV 346 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + G DP G A +L+ +PL++ + N+ + R Sbjct: 347 AVETTGLDPCDLRLARGDAAVRELVAARVPLLEFALRGVVTRHDLNSVEGRIAALDAAAP 406 Query: 411 CINHIKDQKLRYYYSQAIRDR---------LQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 +N IKD LR Y+ + L+++F+ GR ++A G Sbjct: 407 IVNQIKDWSLRQRYAVQLDRWTGFNDEAFVLRRVFEHPSAPAPETGRRPGRDAAGTAAGG 466 Query: 462 PSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P+ G + + E L + HP + + +L + + + + Sbjct: 467 PAAPRAGGRAPAGAAPDDAAVIVERETLKIALQHPGLAGPMFDQLDPEVFTLADHRAVLG 526 Query: 521 FLFSDFV-EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + ++ + + + R V + + + D Y Sbjct: 527 AIAAAGGVSAGLAAAGDVPAWVGRVVTATPHEPVMRLVNALAVEPMLVDHEVDD---RYV 583 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R ++R+ E++ ++ ++ + E L + ++ Sbjct: 584 GNQIARVRELAVTRRITELKSRVQRLNPVTDPEAFNRDYGELIALEQHKRELRE 637 >gi|237803343|ref|ZP_04590928.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025324|gb|EGI05380.1| DNA primase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 473 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 157/482 (32%), Positives = 239/482 (49%), Gaps = 20/482 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKSGKN-----YSACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LTAAAEFYRQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY F A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D+ +R G AF+ + + PL D +++ T+ + + +A + I+ + Sbjct: 349 DTLVRSEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR Q + + + + G Sbjct: 409 NLRILMRQRLTEITGLTGEAVSQLVQSAPADAPPSYNPYVDYDAMPDFADYQPQGGYEQP 468 Query: 479 KP 480 + Sbjct: 469 QE 470 >gi|34499218|ref|NP_903433.1| DNA primase [Chromobacterium violaceum ATCC 12472] gi|34105069|gb|AAQ61425.1| DNA primase [Chromobacterium violaceum ATCC 12472] Length = 598 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 172/624 (27%), Positives = 285/624 (45%), Gaps = 39/624 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+DFI LL + I +++ +YV + N Y ACCPFH EK+PSF + SK FY Sbjct: 2 IPQDFIDQLLSRVDIVDVVDRYVPLKKGGQN-----YMACCPFHKEKSPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQT-DLI 118 +CF C G + F+ G F+++V+ LA G+ +P +P+ +K + + L Sbjct: 57 HCFGCGAHGSAIGFVMEYQGIGFVDAVKMLAEGIGMQVPNERSVNPEASRKAREKQVSLE 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +L+++A+DF+ LK Y RG+ F LGYAPD +L + Sbjct: 117 QLMQLASDFYRRELKG--AANAVAYCKGRGLSGEIAARFGLGYAPDGWQNLEAAVDNYQD 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + ++EAGL+I ++S YDRFR+RL+FPIR+ RG ++ FGGR L KGE KYLNSPE Sbjct: 175 DK--LVEAGLVIVAEDSGRRYDRFRDRLMFPIRNQRGAIVGFGGRVLGKGEP-KYLNSPE 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ LY + +++ R +++VEGYMDV++L Q G+ V++L Sbjct: 232 TPLFEKGRELYGLYEGRQAIREKNR----------VLVVEGYMDVVALAQYGIGYAVATL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T +R L K + ++ CFDGD G +AA++A++ L L+ G +NF+ L D Sbjct: 282 GTATTGEHVRKLLKHAEQVYFCFDGDAAGQKAAWRALENSLPQLVDGKALNFLFLPTEHD 341 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS++R +G AFE+ L +SLPL + + TP+ +A+L + I Sbjct: 342 PDSYVREFGADAFEELLTQQSLPLSVYFTRELCRGINLGTPEGKADLIRQATPLLAQIAA 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L Y + + + + G + ++ R ++ +V + Sbjct: 402 PALGYMIRKRLAEMAGVDVDELDMLTGGKPQRSERGGRSGGRRDYKVPAESQRVVNTTMV 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPE 535 KK L+ L+ +P + + + L + Sbjct: 462 KK-------LIKWLLMNPQWASDVK-LPDSLALSDELGCFAMLAERVLEH---GDAPNTA 510 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-Q 594 ++ + L + L+ + +Q A + + Q L L R + Sbjct: 511 QLIEGLRGTPYEGLIDGVLQQAMQDPDEFADPSDDDRQLFQDGNDRLLKMLHAEQLERLK 570 Query: 595 KEEIEKQIAQVTAKGEAEKTAILI 618 ++ + + + + Sbjct: 571 LKDRHEGLTPEEKALMGQLLREMF 594 >gi|300724880|ref|YP_003714205.1| DNA primase [Xenorhabdus nematophila ATCC 19061] gi|297631422|emb|CBJ92119.1| DNA biosynthesis; DNA primase [Xenorhabdus nematophila ATCC 19061] Length = 582 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 165/595 (27%), Positives = 275/595 (46%), Gaps = 40/595 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N ACCPFH+EKTPSF N K F Sbjct: 4 RIPRAFINDLLARTDIIDLIDVRVPLKKKGKNHQ-----ACCPFHNEKTPSFTVNGDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAAI G+ +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLDFVESIEELAAIHGLEVPYEAGSGGGQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ HSL + YL +RG+ + F +G+AP ++ + Sbjct: 119 LMDKLNSFYQHSLSTPTAQSAQQYLTQRGLSEEITQRFAIGFAPAGWDNVLKRFAHNVED 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RKQLNDAGMLV-TNDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHDTLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA+++++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRTTDSVICCYDGDRAGRDAAWRSLETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R G+ AFE+ + ++L L + L++ +TP+ +L I+ I + Sbjct: 347 DSLVRKEGQEAFEQRMEKALTLSEFLFESLLPQIDLSTPEGATKLSSLAMPLISQIPGEA 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR+Y Q I L + + + P+ Sbjct: 407 LRFYLLQEIGRLLGIPDTTQLERSLAKLVKKDTSTYQALKLKPTTM-------------- 452 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+ L + Q ++ + Sbjct: 453 -----RILIALLVQNPHLATLVPSLQGMFSAQIAGL-PLFIELVDTCLAQPGLTTGQLLE 506 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + + + L++L D + + + + AL F + + Sbjct: 507 QYRDNKYAKQLEKLAAW-NDIQIEEIAEKTFSDALSHLFASALNERFNFLMAKER 560 >gi|118444746|ref|YP_878547.1| DNA primase [Clostridium novyi NT] gi|118135202|gb|ABK62246.1| DNA primase [Clostridium novyi NT] Length = 597 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 168/633 (26%), Positives = 284/633 (44%), Gaps = 39/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I ++I + V R N + CPFH+EKTPSF + K Y Sbjct: 2 ISEEIIEKIKEQTDIVDVISESVKLKRAGRN-----FLGLCPFHNEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ +F+ F+E+V+ L + + D K + + L ++ Sbjct: 57 KCFGCGEAGNIFTFVMKTKNLPFVEAVKYLGDKVNIHIEDNDYKNQAYKNKNDKLYKINV 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A ++ +L+ +K+ Y RGI + I F LGYAP ++L +L+ KG++E Sbjct: 117 EAARYYFKNLQ--INKKATEYFTNRGIVNKTIRRFGLGYAPSGWHNLMNYLKNKGYTELD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G + ++YDRFR R+IFP+ RG+VI FGGR L KYLNSPET +F Sbjct: 175 LLNAGLIIRG-KNNSTYDRFRERVIFPVFDYRGRVIGFGGRVL-DDSKPKYLNSPETDIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + S II+VEGYMD +SL Q G+ NVV+SLGTAL Sbjct: 233 KKGTNLYGLNFAIKNNK-----------SRTIIIVEGYMDCISLYQHGIDNVVASLGTAL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + +I++ +D D G A + + + G + + + G+DPD F Sbjct: 282 TYEQGKLLKRYVDKIIISYDADFAGQSATLRGLKI---LKKQGFDLKVLDIPEGKDPDEF 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +GK AF KLI ESLPLVD K + + + + IN + + + Sbjct: 339 IKNHGKEAFMKLIDESLPLVDYELKMAKFGLDISNEEMLMKYVNNACEIINKL-NPIEKD 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + Q + R R KG + K + Sbjct: 398 IYIRKLSQETGLKEQAIYDLLNVKDRKNHIKDEKRYTKGNFGQ-------KLYVEPAYMK 450 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ ++ + + + + + +K++ + + +I + + Sbjct: 451 TQRKLIKIMMLNIESYDYVMHNIYEEDFIVDSHKKIFKLIKEQVNNNED-NIRDIEKSIE 509 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + R+ + + + + ++ Y + + +K L KEE+ K+I Sbjct: 510 TKCDD---VESSREWTKIQQINFSEDIDYKELVNAYIKEIKKFK----LEESKEEVMKKI 562 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 A+G E++ L+ L ++ I ++ E Sbjct: 563 KHYEAQGLFEESLNLVKELEKIQNNIMEMNHCE 595 >gi|269798256|ref|YP_003312156.1| DNA primase [Veillonella parvula DSM 2008] gi|269094885|gb|ACZ24876.1| DNA primase [Veillonella parvula DSM 2008] Length = 590 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 176/631 (27%), Positives = 277/631 (43%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L +F+E+++RLA A +PLP P+ +++ + L Sbjct: 60 YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A FFH+ L + + K YL +RG+ IE FKLG+APD L +G Sbjct: 120 SDLAATFFHNCLTQTSIGKVGLDYLKKRGLTQATIETFKLGFAPDGWDKLYRAFHDRGID 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 288 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L KG K Sbjct: 405 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL +LQ L ++ E + + LF+ + + I Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 512 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + D + AL R L Q + Sbjct: 513 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 557 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587 >gi|150390748|ref|YP_001320797.1| DNA primase [Alkaliphilus metalliredigens QYMF] gi|149950610|gb|ABR49138.1| DNA primase [Alkaliphilus metalliredigens QYMF] Length = 611 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 161/638 (25%), Positives = 298/638 (46%), Gaps = 38/638 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P + I ++ I+++I QY+ R ++ A CPFH+EKTPSF+ + K FY Sbjct: 5 FPEELIDEIKAQNEITDVISQYISLKRIGSSN-----KALCPFHNEKTPSFNVSTEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 CF C GD + F+ + F+E+++ LA A + +P D ++ ++ K++ + Sbjct: 60 KCFGCGEGGDVIQFIMKMENLDFMEAIKMLAQRANIEIPEKDQSLEVAEEMKLRNLFWEI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +++H L + YL ERG+ S I F LG+AP+ L +HL Q+G+ Sbjct: 120 NKKAAKYYYHCLTKEKSIA-LGYLSERGLISKTINTFGLGFAPNEWQGLIQHLTQEGYDL 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I + GL+I + YDRFRNR+IFPI RG V+ FGGR L KYLNSPET Sbjct: 179 KDIEKCGLIIPKKEQSGYYDRFRNRIIFPIFDIRGNVVGFGGRVL-DDSLPKYLNSPETK 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K + LY A Y+ ++ +ILVEGYMDV+ L Q G +NVV++LGT Sbjct: 238 LFNKSRILYGLNIARKYM-----------TTRQLILVEGYMDVIPLYQQGFKNVVAALGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT+ ++L + ++LCFDGD+ G++A ++I++ + +++ +G DPD Sbjct: 287 SLTKEHAQVLKRYCDDVILCFDGDEAGIKATLRSIEI---LKNGDFNIKVMMMPKGVDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++I+ GK F++ I +L +VD E + + R L + I IK Sbjct: 344 TYIQSKGKEGFQRAINAALNVVDYQIMLAKEKYPQDKVEGRVNLARDIAKIIKQIKSPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y Q + E G+ + K N+ + R S + Sbjct: 404 KEAYIQKVSQETGINQDAIALEVYGHQKKQKPNSETKKYSSNYNRNNNSKYKYIEALPPV 463 Query: 481 SLR-----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E L+ ++ + + +++ + + Q + +++ Q + Sbjct: 464 EQKGHTIIEKQLIKFMLLNINAIPHLMEKVEAEDFTIGKHQLIVEYIYE--NHQNLQGTQ 521 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + LK+ + + I + ++ L R L +++ Sbjct: 522 QLVEHYPD------LKETMTDLLHIEIQHIDMNKAIDQYLRNLKRY-KLLYEIRQLQQRE 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++I + + + ++ + + + +++ +I++ Sbjct: 575 KDILNN-SNLNKEEVEKELLEIGIEIMKKKLELQRIQA 611 >gi|239637626|ref|ZP_04678598.1| DNA primase [Staphylococcus warneri L37603] gi|239596844|gb|EEQ79369.1| DNA primase [Staphylococcus warneri L37603] Length = 602 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 153/626 (24%), Positives = 267/626 (42%), Gaps = 37/626 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTD 116 +CF C G+ F + SF E+V+ L + + V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFTEAVKELGERVNITVDVGNSQYQNTNTQIASEDLQ 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +I + E+ +++H++L K ++ YL ER I+ +GYAP+S + + L + Sbjct: 116 MIEMHELMQEYYHYALMKTVEGEKALTYLKERDFPEQLIKERGIGYAPNSSHFCHDFLEK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 KG+ E EAGLL + + + YDRFR+R++FP+++++G+++ + RT + KYLN Sbjct: 176 KGYDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGYSART-YTNQEPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F K K LYN A ++K + IIL+EG+MDV+ AG++ VV Sbjct: 235 SPETPIFQKRKLLYNLDKARKSIRK----------NDEIILLEGFMDVIKSDHAGLKTVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT L+ + + KL+ I L FDGD G A K L G V V L Sbjct: 285 ASMGTQLSSEHITFIKKLTSNITLMFDGDFAGREATLKTGQ---TLLEQGLNVFVVQLPS 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD ++R YG AF + + M ++ N + + I + Sbjct: 342 DMDPDEYVRKYGNDAFLDFVQKDKKSFVMFKVNTHKDEIQNNDLAYEKYLKEVTQDIAAM 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L+ Q + + + F+ E G + + N + +++ Sbjct: 402 TSPILQKKVLQDVAELFKVSFETLDYEV-GLRQQSQGNIPSYPDDAYAYEGQPQQVIQFN 460 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E ALL + +Q++ + N +++++ L + + Sbjct: 461 QLTRHEKAERALLKHFMQDKDTFLNYHQQIEVDDFTNAYFKRIFNILHDYYSNNDMYQLS 520 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + Q + E L LD V + E + Y L K L Sbjct: 521 SMIQYIDSDDLREALISLDSYVLN--------EEPFEHELEDYINILNENKNEDSLE--- 569 Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL 621 + ++ + T G+ E + ++ Sbjct: 570 -ALNHKLREATRIGDIELQKYYLQLI 594 >gi|85373961|ref|YP_458023.1| DNA primase [Erythrobacter litoralis HTCC2594] gi|84787044|gb|ABC63226.1| DNA primase [Erythrobacter litoralis HTCC2594] Length = 625 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 182/636 (28%), Positives = 301/636 (47%), Gaps = 34/636 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ +L + +S++I + R ++ ACCPFH+EKTPSF +D KGFY Sbjct: 2 LSPQWLDELRARVTLSSVIMRTTKLQRAGR-----EWKACCPFHNEKTPSFTVSDEKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + +++ G F+++V+ LA AG+ +P DP+ ++ + + LI + E Sbjct: 57 HCFGCGAHGDVIRWMTDQRGLQFMDAVKELAQEAGLEVPAPDPRAAQQAEKRASLIDVTE 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + +F L+ A R YL RG + I F GYAPDS+ + GF + Sbjct: 117 ASQRWFVEQLRGAEGARARDYLASRGFSNGVIREFGFGYAPDSKQA---MGSGVGFEDAM 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETIL 241 ++E+G+ I+ ++ + YDRFR+RL+ PI+ +RG+VIAFGGR L + KYLNSP+T L Sbjct: 174 LVESGMRIETEDGSK-YDRFRDRLMLPIQDARGRVIAFGGRILDKRDGVAKYLNSPDTPL 232 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+ LYN A +++ R I++VEGYMDV++L AG+++ V+ LGTA Sbjct: 233 FDKGRTLYNLHRAGPASRQTGR----------IVVVEGYMDVIALANAGIEDAVAPLGTA 282 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE Q+ +LW++ R +LCFDGD G RAA +AI L L P + + V L G DPD Sbjct: 283 LTERQIEMLWRMVERPILCFDGDAAGQRAAMRAIQRALPLLRPAHSLGIVRLPAGLDPDD 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I G A E ++ + L+D LW+ E + ++P+ +A L+ L ++ I D ++ Sbjct: 343 LINQRGAQAMEDILAKPGSLLDTLWQFERDAEPLDSPEAKAGLKARLMAHVDAIGDADIK 402 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + DR + + K+ R + P+ ++G + Sbjct: 403 ALYRRELLDRFSDYAFPRREKAPWKPNGFSKSLASRPRPDPAAIRALQKTIQGGSRDALT 462 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 ++ LI HP + LA+ + + EI + Sbjct: 463 GA---VVAGLIRHPDQIDRHADALAEAA---ERDANIARAI------NPLLDMAEILEDG 510 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E +L R + + D R+ +A++L L + Sbjct: 511 GELPISADSGRLAPPDR-SHFSFLQEGTDPEDAREDLAEAVSLLVERPALETALAAATAR 569 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 +G + L+ + ++ Q+ S +A Sbjct: 570 F-DTDPEGAFAEQQRLLKRKLDFEARLGQMASLQAA 604 >gi|116620136|ref|YP_822292.1| DNA primase [Candidatus Solibacter usitatus Ellin6076] gi|116223298|gb|ABJ82007.1| DNA primase [Candidatus Solibacter usitatus Ellin6076] Length = 580 Score = 361 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 169/622 (27%), Positives = 283/622 (45%), Gaps = 51/622 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 DF++ L + I ++IG+YV R T Y CPFHDEK+PSF + FY CF Sbjct: 2 DFVEQLKSSVDIVSVIGEYVRLRRSGTQR----YMGLCPFHDEKSPSFTVHVVHQFYKCF 57 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 SC GD + F+ G SF E+++ L+ G+P+P ++ K++ L+ + E+A Sbjct: 58 SCGAGGDVVKFVMEKEGISFYEALKSLSERYGIPMPKRSQYADEDSKLRGSLLVMHELAA 117 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 + F +LK+ Y+ +RG+ +E F LGYA S +L Q+ FS ++ + Sbjct: 118 ENFRDNLKSQAGDNARAYIAQRGLAPETVEHFGLGYADRSGRALVRLFEQREFSVAQMEQ 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 +GL+ + + YDRFRNRL+FPI + +G++IAFGGR LS + KYLNSPET ++ K Sbjct: 178 SGLVGKRQDG-SLYDRFRNRLMFPIHNEQGKIIAFGGRALSPDDEPKYLNSPETDIYKKS 236 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LYN A ++K R ILVEGYMDV+ + AG NVV+ GTA Sbjct: 237 HVLYNLHRAKQGIRKEDRA----------ILVEGYMDVIGVTAAGFHNVVACCGTAFGAQ 286 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q++ + + + RI + FD D G A+ +++DL L G +V V L G DPD + + Sbjct: 287 QVQAIKRHTHRIAVNFDPDAAGAGASERSLDL---LLAEGMQVRIVELDGGLDPDEYCKE 343 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G A++ I + L R T + + + L + +I D R + Sbjct: 344 RGTEAYQARIDGAKGYFYWLADRARAKHDMRTSEGKVAVLNFLLPKVQNIADSLERMTVA 403 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + + + + R P+ L E Sbjct: 404 NDVAGYIGVDQGMVL----DHFKKAASDRNERAIPRPANPLRHD--------------ER 445 Query: 486 ALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 LL+ L+ H E +++ + + ++++ +F+ EE++ RL E Sbjct: 446 MLLIALLTHSEGRAELIEQMKVLETIETLPSRRIFQAVFALDEAGGRIGFEELNSRLEEA 505 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L + + + D + A++ +R+ QQ L L +++ +I++ Sbjct: 506 DQNLLAQAVLNE--DGEISPEEVAASVESLRRSEQQYLRL------------QLKARISE 551 Query: 605 VTAKGEAEKTAILISILHEVHI 626 G+ ++ L L + Sbjct: 552 SERAGKFDEAVRLTMELQGIEK 573 >gi|329725461|gb|EGG61944.1| DNA primase [Staphylococcus epidermidis VCU144] Length = 598 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 156/635 (24%), Positives = 280/635 (44%), Gaps = 41/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L + + + K + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL ERG I+ ++GYAPD+ + + L +K Sbjct: 116 IEMHELIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + T +DRFRNR++FP+++ +G+++ + GRT + KYLNS Sbjct: 176 GYDIELAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRT-YTDQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A +++ IIL+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRILYNLNKARKFIR----------QQDEIILLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ + L FDGD G A K L G V V L G Sbjct: 285 SMGTQLSQEHITFLQKLTQNVTLMFDGDYAGKEATLKTGQ---ALLNQGLNVYVVQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +IR Y F K + + + + +N + + ++ + Sbjct: 342 MDPDDYIRKYDNEQFLKFVQQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVN 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R Q I D + + E ++ + Q + Sbjct: 402 SGIIRNKLIQNIADIFKVNPETIQYELDATYQHQM----SSNTYPTFQDEPSKQQLILGR 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E AL+ L YQ++ + N+ L++++S+L+ + + Y+ + Sbjct: 458 LTKNEKAERALIKHLTKDKDTFLNYYQKIVPEDFTNSYLKRIFSYLYDYYSKNDYYTISD 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E+L +LD+ + + + + Y Q + L Sbjct: 518 MMQYIESNELREVLIELDQYHLN--------DEPYENEIEDYIQIIKNNNNEDSLE---- 565 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ + + G++E + ++ V+ +++ Sbjct: 566 SLNYKLREASRIGDSELQKYYLQLI--VNKNKNRM 598 >gi|23099400|ref|NP_692866.1| DNA primase [Oceanobacillus iheyensis HTE831] gi|22777629|dbj|BAC13901.1| DNA primase [Oceanobacillus iheyensis HTE831] Length = 604 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 174/632 (27%), Positives = 292/632 (46%), Gaps = 36/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I+ + I ++IG+Y+ ++ N Y+ CPFH EKTPSF + K + Sbjct: 5 IPDEIIEQVKNANDIVDVIGEYIQLKKQGRN-----YFGLCPFHGEKTPSFSVSQEKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121 +CF C G+ +FL + +F E++Q LA G+ LP K + ++ Sbjct: 60 HCFGCGKGGNVFTFLKEIDSFTFYEALQFLAEKQGIELPQTSIKKESFLSEEDQQVLTAN 119 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +HH LK K + YL +RGI A+E F++GYAP+ + E L +KGFS+ Sbjct: 120 DWLMKLYHHLLKYTKDGKEGYQYLKDRGISDEALEDFQIGYAPNIKDFTLEFLTKKGFSK 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +++ G+L N DRFR R+IFPIR++ G+ + F GR L G KYLNSPE Sbjct: 180 QLLVKNGIL-SAQNDHDVIDRFRGRVIFPIRNAIGKTVGFVGRALHDGVEPKYLNSPEGG 238 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K L+NF A +++K + +IL EG +DV+S Q G++NVV++LGT Sbjct: 239 LFQKSKILFNFDLAKKHIRK----------ENEVILFEGSVDVISAYQNGLKNVVATLGT 288 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q +LL + +VLC+DGDD GL AAYKA L G + + +DPD Sbjct: 289 ALTESQAKLLNRYVETVVLCYDGDDAGLNAAYKASQL---LRSVGCEIRIAKMDPSDDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKDQK 419 SFIR G AF+ I+ + + R + +R + ++ I+ Sbjct: 346 SFIRSNGMEAFQNRIIRTSDTYMTFYMRYFRRDYNLKVEGDRIAYIEKVLKELSMIESTL 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R YY Q + + +T+ Y R ++N+R + SS + KL Sbjct: 406 EREYYVQELHKEFNLSHESLMTQLQSY-RNNQQNSRDNHRYNRYTNKGNSSY-QTKLHPA 463 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L+ ++ I ++ +L ++ N+ + + + L++ + E + Sbjct: 464 FINAEKKLIAYMLQDSYITEKVQNDLGA-AFNVNDHKIIATHLYAYYEEGNPPDIGLFME 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 RL E L + V +A + + + ++ + L + + ++ Sbjct: 523 RLSE-------DHLKKHVVEAVMMTDIANSTDEEIDDYIRFILNESNQNVS----IKSLK 571 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + + A + + E+ Q + Sbjct: 572 EKQRIAEQENNPMEAAKIAMEIIELQKQRKHM 603 >gi|167772126|ref|ZP_02444179.1| hypothetical protein ANACOL_03500 [Anaerotruncus colihominis DSM 17241] gi|167665924|gb|EDS10054.1| hypothetical protein ANACOL_03500 [Anaerotruncus colihominis DSM 17241] Length = 586 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 141/557 (25%), Positives = 241/557 (43%), Gaps = 26/557 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F+++L + I ++ YV RR A CPFH EK+PSF + Sbjct: 2 IPDLFLQELKNNSDIEQVVSSYVRLKRRGRIAN-----GLCPFHSEKSPSFTVYPDNQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F+ + ++E+V+ LA AG+ +P + K++ + L Sbjct: 57 YCFGCGAGGDVITFIRKIENLEYVEAVRFLAQRAGMAMPEE-VADDGAAKMKMRIYALNR 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 FH LK+ K YL ERG+ + I F LGYAP++ + LR +G+ +++ Sbjct: 116 ALARHFHDCLKSPAGKPGLDYLHERGLTNRTITHFGLGYAPEAWDGAVKFLRSQGYRDDE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ A + G + YD+FR R+IFPI RG V+ FGGR + KYLNS +T +F Sbjct: 176 LLAAAVAARGRSG-GLYDQFRGRVIFPIIDLRGNVVGFGGRIMGDARGPKYLNSSDTPVF 234 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K +NL+ A + +IL EGYMDV+++ QAG N V++LGTAL Sbjct: 235 KKSRNLFALNFAKASKR------------GGLILCEGYMDVIAMHQAGFDNAVATLGTAL 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RL+ + + +VL +D D PG A +A+ L G ++ + ++ +DPD + Sbjct: 283 TPEQSRLIAQYAQEVVLSYDSDGPGQAATKRAVSL---LGETGVKIRILSMTGAKDPDEY 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +G F L+ + + ++ +T + + + + + R Sbjct: 340 IKKFGAERFSLLLSGASNATEYEIEKLRRKYDCDTAEGKVAFLREFAALMVSVPNAVERD 399 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK---- 478 Y L+ T+ + K R + + + + Sbjct: 400 VYVSKTAAELEVSKSAIETQLKYEQKRAAKRRRGDASQLRVYSEAGPAEQRRDPQRARYI 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + +L E +L L+ +P + Q + + + + L LF + + Sbjct: 460 RYALAEDKILAILMKNPDYYEHAAQRIGLDGFVTDRNRALAKVLFERLAAGQSVELPLLS 519 Query: 539 QRLCERGFGELLKQLDR 555 +L E L+ Sbjct: 520 AQLDEEQMAAAAGLLNS 536 >gi|113971242|ref|YP_735035.1| DNA primase [Shewanella sp. MR-4] gi|113885926|gb|ABI39978.1| DNA primase [Shewanella sp. MR-4] Length = 574 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 287/620 (46%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P ++++ + DL R Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGSGKRQDDGLSRDLYR 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ FF L+ +DK+ YL RG+ +E F +G+APD L R Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLTYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ G+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTTGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDFAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE+++ ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ K KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTTSTGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L + + ++ Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + LI Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567 >gi|289666291|ref|ZP_06487872.1| DNA primase [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670011|ref|ZP_06491086.1| DNA primase [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 581 Score = 361 bits (925), Expect = 3e-97, Method: Composition-based stats. Identities = 178/633 (28%), Positives = 280/633 (44%), Gaps = 64/633 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRAHFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ + ++ CFDGD G AA+KA++ VL + +V F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAHKVYFCFDGDRAGRSAAWKALESVLPKMREEKQVFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDS +R G AF + ++ P+ + + + + + +A K I + Sbjct: 345 GEDPDSIVRSQGPDAFNARLEKATPISEFYFNQRLQGAQLASRTGQAAFFDKCKPDIVAM 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D R I++ Q A R PS + ++ K Sbjct: 405 PDSGFRDIMVTRIKELTGQDI---------------FGASKRQSSLPSNTNGREAVPKRS 449 Query: 476 LSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L A + L+ P++ +++ +LA +R E L L ++ Sbjct: 450 LV-------RAAIAILLQQPSLALSLDRHHDLAGLRLPGVE---LLIELLDLVRQRPEIS 499 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ER L++L Q + +LL + Sbjct: 500 TGALLEHFAEREEQVALQRLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQ 549 Query: 594 QKEEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 + EE++ + + + +K L+ L + Sbjct: 550 RVEELQAK-QRAQGLDDTDKYEMRELLKALAAL 581 >gi|82751165|ref|YP_416906.1| DNA primase [Staphylococcus aureus RF122] gi|82656696|emb|CAI81123.1| DNA primase [Staphylococcus aureus RF122] Length = 599 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNGKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|15609480|ref|NP_216859.1| DNA primase [Mycobacterium tuberculosis H37Rv] gi|15841850|ref|NP_336887.1| DNA primase [Mycobacterium tuberculosis CDC1551] gi|31793528|ref|NP_856021.1| DNA primase [Mycobacterium bovis AF2122/97] gi|148662171|ref|YP_001283694.1| DNA primase [Mycobacterium tuberculosis H37Ra] gi|148823544|ref|YP_001288298.1| DNA primase [Mycobacterium tuberculosis F11] gi|167969899|ref|ZP_02552176.1| DNA primase [Mycobacterium tuberculosis H37Ra] gi|215403753|ref|ZP_03415934.1| DNA primase [Mycobacterium tuberculosis 02_1987] gi|215412088|ref|ZP_03420852.1| DNA primase [Mycobacterium tuberculosis 94_M4241A] gi|215427724|ref|ZP_03425643.1| DNA primase [Mycobacterium tuberculosis T92] gi|215431283|ref|ZP_03429202.1| DNA primase [Mycobacterium tuberculosis EAS054] gi|215446584|ref|ZP_03433336.1| DNA primase [Mycobacterium tuberculosis T85] gi|219558330|ref|ZP_03537406.1| DNA primase [Mycobacterium tuberculosis T17] gi|253798583|ref|YP_003031584.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 1435] gi|254232487|ref|ZP_04925814.1| DNA primase dnaG [Mycobacterium tuberculosis C] gi|254551390|ref|ZP_05141837.1| DNA primase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187345|ref|ZP_05764819.1| DNA primase [Mycobacterium tuberculosis CPHL_A] gi|260201467|ref|ZP_05768958.1| DNA primase [Mycobacterium tuberculosis T46] gi|260205642|ref|ZP_05773133.1| DNA primase [Mycobacterium tuberculosis K85] gi|289443863|ref|ZP_06433607.1| DNA primase dnaG [Mycobacterium tuberculosis T46] gi|289447984|ref|ZP_06437728.1| DNA primase dnaG [Mycobacterium tuberculosis CPHL_A] gi|289553870|ref|ZP_06443080.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 605] gi|289570483|ref|ZP_06450710.1| DNA primase dnaG [Mycobacterium tuberculosis T17] gi|289575035|ref|ZP_06455262.1| DNA primase dnaG [Mycobacterium tuberculosis K85] gi|289745631|ref|ZP_06505009.1| DNA primase [Mycobacterium tuberculosis 02_1987] gi|289750950|ref|ZP_06510328.1| DNA primase dnaG [Mycobacterium tuberculosis T92] gi|289754450|ref|ZP_06513828.1| DNA primase dnaG [Mycobacterium tuberculosis EAS054] gi|289758468|ref|ZP_06517846.1| DNA primase dnaG [Mycobacterium tuberculosis T85] gi|294994555|ref|ZP_06800246.1| DNA primase [Mycobacterium tuberculosis 210] gi|297634941|ref|ZP_06952721.1| DNA primase [Mycobacterium tuberculosis KZN 4207] gi|297731932|ref|ZP_06961050.1| DNA primase [Mycobacterium tuberculosis KZN R506] gi|298525829|ref|ZP_07013238.1| DNA primase [Mycobacterium tuberculosis 94_M4241A] gi|306776602|ref|ZP_07414939.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu001] gi|306780381|ref|ZP_07418718.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu002] gi|306785126|ref|ZP_07423448.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu003] gi|306789491|ref|ZP_07427813.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu004] gi|306793815|ref|ZP_07432117.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu005] gi|306798208|ref|ZP_07436510.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu006] gi|306804086|ref|ZP_07440754.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu008] gi|306808659|ref|ZP_07445327.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu007] gi|306968486|ref|ZP_07481147.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu009] gi|306972712|ref|ZP_07485373.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu010] gi|307085013|ref|ZP_07494126.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu012] gi|313659267|ref|ZP_07816147.1| DNA primase [Mycobacterium tuberculosis KZN V2475] gi|54038869|sp|P63963|PRIM_MYCBO RecName: Full=DNA primase gi|54041647|sp|P63962|PRIM_MYCTU RecName: Full=DNA primase gi|1781250|emb|CAB06159.1| PROBABLE DNA PRIMASE DNAG [Mycobacterium tuberculosis H37Rv] gi|13882115|gb|AAK46701.1| DNA primase [Mycobacterium tuberculosis CDC1551] gi|31619121|emb|CAD97233.1| PROBABLE DNA PRIMASE DNAG [Mycobacterium bovis AF2122/97] gi|124601546|gb|EAY60556.1| DNA primase dnaG [Mycobacterium tuberculosis C] gi|148506323|gb|ABQ74132.1| DNA primase [Mycobacterium tuberculosis H37Ra] gi|148722071|gb|ABR06696.1| DNA primase dnaG [Mycobacterium tuberculosis F11] gi|253320086|gb|ACT24689.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 1435] gi|289416782|gb|EFD14022.1| DNA primase dnaG [Mycobacterium tuberculosis T46] gi|289420942|gb|EFD18143.1| DNA primase dnaG [Mycobacterium tuberculosis CPHL_A] gi|289438502|gb|EFD20995.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 605] gi|289539466|gb|EFD44044.1| DNA primase dnaG [Mycobacterium tuberculosis K85] gi|289544237|gb|EFD47885.1| DNA primase dnaG [Mycobacterium tuberculosis T17] gi|289686159|gb|EFD53647.1| DNA primase [Mycobacterium tuberculosis 02_1987] gi|289691537|gb|EFD58966.1| DNA primase dnaG [Mycobacterium tuberculosis T92] gi|289695037|gb|EFD62466.1| DNA primase dnaG [Mycobacterium tuberculosis EAS054] gi|289714032|gb|EFD78044.1| DNA primase dnaG [Mycobacterium tuberculosis T85] gi|298495623|gb|EFI30917.1| DNA primase [Mycobacterium tuberculosis 94_M4241A] gi|308215064|gb|EFO74463.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu001] gi|308326813|gb|EFP15664.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu002] gi|308330332|gb|EFP19183.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu003] gi|308334165|gb|EFP23016.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu004] gi|308337970|gb|EFP26821.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu005] gi|308341575|gb|EFP30426.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu006] gi|308345147|gb|EFP33998.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu007] gi|308349450|gb|EFP38301.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu008] gi|308354001|gb|EFP42852.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu009] gi|308357943|gb|EFP46794.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu010] gi|308365464|gb|EFP54315.1| DNA primase dnaG [Mycobacterium tuberculosis SUMu012] gi|323719253|gb|EGB28398.1| DNA primase dnaG [Mycobacterium tuberculosis CDC1551A] gi|328458350|gb|AEB03773.1| DNA primase dnaG [Mycobacterium tuberculosis KZN 4207] Length = 639 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 142/653 (21%), Positives = 251/653 (38%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 4 RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ L+ Sbjct: 60 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D+ A F G+AP SL +HL++KGF Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 E++ AGL DRF RL++PIR+S G+V+ FG R L +++ KY+N+P Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L +L +L ++ FDGD+ G AA KA D + Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ PL + + ++ + R Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461 + IKD LR Y++ + + + K+ R R + Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P+ V+ + L + + +PA+ + L + + E + + Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + ++ + L ++ + D Y Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + L RQ E++ ++ +++ + ++ L L + + Q Sbjct: 579 VLARLQEVWLGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631 >gi|114048480|ref|YP_739030.1| DNA primase [Shewanella sp. MR-7] gi|113889922|gb|ABI43973.1| DNA primase [Shewanella sp. MR-7] Length = 574 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 288/620 (46%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P ++++ + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ FF L+ +DK+ YL RG+ +E F +G+APD L R Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE+++ ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ K KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTASTGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L + + ++ Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + LI Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567 >gi|332799074|ref|YP_004460573.1| DNA primase [Tepidanaerobacter sp. Re1] gi|332696809|gb|AEE91266.1| DNA primase [Tepidanaerobacter sp. Re1] Length = 610 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 159/632 (25%), Positives = 273/632 (43%), Gaps = 41/632 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + IK++ I ++ +Y ++ N + CPFH+EKTPSF + K + Sbjct: 8 YSEEVIKEVQDRADIVEIVSEYTSLKKQGGN-----HIGLCPFHEEKTPSFSVDAEKQLF 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLI 121 YCF C + G+ +F+ +F E+V+ LA + LP D + + + + + +R+ Sbjct: 63 YCFGCGIGGNVFTFIMKKENLNFPEAVRYLADKFNIKLPGNMDKDLSLEFQEKREYLRVN 122 Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A +++H L + Y+ ERG+ + +E F LGYAP S L + +G Sbjct: 123 RLAAKYYNHCLLHTREGSKAMEYIKERGLTAETVEKFYLGYAPPSWDGLIKFAHFEGVKI 182 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + GL+I ++ YDRFRNRL+FPI +I FGGR L KYLN+PET Sbjct: 183 DTLEKIGLIIPRKDNKGYYDRFRNRLMFPIEDVTKNIIGFGGRAL-DESMPKYLNTPETP 241 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG NLY + + I+VEGYMD ++L Q G V+SLGT Sbjct: 242 LFSKGDNLYALSMIKK------------DPALDTIVVEGYMDCITLHQYGFNQSVASLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL K + ++L +D D+ G A + ID+ G RV + + G+DPD Sbjct: 290 ALTKNQARLLKKYTDGVILSYDADEAGKAATMRGIDI---LAQEGLRVKVLNMPNGKDPD 346 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I+ YG F+KL+ +S+ + ++ + T D + + + + + ++ Sbjct: 347 EVIKTYGPQHFQKLLTDSMDFISYKLFLAKKDINIQTHDGKLKFIKRAVDILTGVDNEPE 406 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y++ + L Q E K + K R K Sbjct: 407 LELYAKKLASELGISVQAIKKEVQ----RRKLADNGYEYKKSHIRNNNKEFHKISQVTGF 462 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E LL ++ + + ++ +L + +K+ LF + + I Sbjct: 463 HKAERKLLKLILENDKLRKKMAGQLEPRFFTGKNTKKIADVLFEMIDKNQDIDSSYIFNY 522 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E G EL L V +L + + ++ + Sbjct: 523 LDEEGCAELSTILMENVVLKDGE--------------LINSLIKKVKQGYFKKSIVQVRE 568 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 QI + G+ E+ L++ ++ +++++E Sbjct: 569 QIRKAELLGQREEINSLLNTYQQLKAEMNEVE 600 >gi|326903959|gb|EGE50892.1| DNA primase dnaG [Mycobacterium tuberculosis W-148] Length = 639 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 142/653 (21%), Positives = 252/653 (38%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 4 RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ L+ Sbjct: 60 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLLA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D+ A F G+AP SL +HL++KGF Sbjct: 120 ANAAAAAFYAQALQSDEAAPARQYLTERSFDAAAARKFGCGFAPSGWDSLTKHLQRKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 E++ AGL DRF RL++PIR+S G+V+ FG R L +++ KY+N+P Sbjct: 180 FEELEAAGLSRQ--GRHGPMDRFHRRLLWPIRTSAGEVVGFGARRLFDDDAMEAKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV + V+S Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTSAVAS 287 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA L +L +L ++ FDGD+ G AA KA D + Sbjct: 288 CGTAFGGEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFD---GEQKLAGQSFV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G A L+ PL + + ++ + R Sbjct: 345 AVAPDGMDPCDLRLKCGDAALRDLVARRTPLFEFAIRAAIAEMDLDSAEGRVAALRRCVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---------HRDQKG 461 + IKD LR Y++ + + + K+ R R + Sbjct: 405 MVGQIKDPTLRDEYARQLAGWVGWADVAQVIGRVRGEAKRTKHPRLGRLGSTTIARAAQR 464 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P+ V+ + L + + +PA+ + L + + E + + Sbjct: 465 PTAGPPTELAVRPDPRDPTLWPQREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAA 524 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + ++ + L ++ + D Y Sbjct: 525 IDTAGGTSAGLSGAQWLDMVRQQTTSTVTSALISELGVEAIQV------DDDKLPRYIAG 578 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + L RQ E++ ++ +++ + ++ L L + + Q Sbjct: 579 VLARLQEVWLGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 631 >gi|165976902|ref|YP_001652495.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877003|gb|ABY70051.1| DNA primase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 580 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 285/615 (46%), Gaps = 50/615 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KYLNS Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HKG LY F AL + + + +++VEGYMDV++L Q GV NVV+ Sbjct: 235 PESAIYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R GK FE + ++ L D L+ ++ + +++L IN I Sbjct: 345 EDPDSFVRAQGKQGFEGYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + + + + + Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P +++ A + + L L ++ Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505 Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590 + + ++ ELL + V + + E + + + L R Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565 Query: 591 LS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 566 LSAEEKQELVMLIAQ 580 >gi|282850494|ref|ZP_06259873.1| DNA primase [Veillonella parvula ATCC 17745] gi|282579987|gb|EFB85391.1| DNA primase [Veillonella parvula ATCC 17745] Length = 590 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 176/631 (27%), Positives = 279/631 (44%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L +F+E+++RLA A +PLP P+ +++ + L Sbjct: 60 YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A+ FFH+ L + + K YL +RG+ IE FKLG+APD L ++G Sbjct: 120 SDLASTFFHNCLTQTSIGKVGLDYLKKRGLTQETIETFKLGFAPDGWDKLYRAFHERGID 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 288 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L KG K Sbjct: 405 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL +LQ L ++ E + + LF+ + + I Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 512 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + D + AL R L Q + Sbjct: 513 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 557 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587 >gi|166710398|ref|ZP_02241605.1| DNA primase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 582 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 278/633 (43%), Gaps = 63/633 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATRFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + + R + + SLV+ Sbjct: 405 PEGAFGDLMKQELSRLTG---------VGASASAQQSAPKPRPPARMAAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + L+ P++ E + + +R + + L L ++ Sbjct: 456 ------------IAILLQRPSLAASLEGVHDFSGLRLPDID---LLMELLDLVRQRPEIS 500 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ER L+ L Q + +LL + Sbjct: 501 TGALLEHFAERDEQAALQTLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQ 550 Query: 594 QKEEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 + EE++ + + + +K L+ L + Sbjct: 551 RVEELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|294792117|ref|ZP_06757265.1| DNA primase [Veillonella sp. 6_1_27] gi|294457347|gb|EFG25709.1| DNA primase [Veillonella sp. 6_1_27] Length = 597 Score = 360 bits (924), Expect = 4e-97, Method: Composition-based stats. Identities = 176/631 (27%), Positives = 279/631 (44%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I +++ ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 12 FENELIEQIKDANDIVSVVSEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L +F+E+++RLA A +PLP P+ +++ + L Sbjct: 67 YCFGCHASGNAIKFLMELEHLTFVEALERLANRANIPLPEAKLSPEQRARDERRKKLYEA 126 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A+ FFH+ L + + K YL +RG+ IE FKLG+APD L ++G Sbjct: 127 SDLASTFFHNCLTQTSIGKVGLDYLKKRGLTQETIETFKLGFAPDGWDKLYRAFHERGID 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 187 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 245 SIFEKGKLLFAFDKAYKSIR----------EEKQAILVEGYMDVISAHNHGVTNVVASLG 294 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 295 TAYTRDHGHILMRQAEEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 351 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF++L+ +++ +D L N + + + + I +I Q Sbjct: 352 DDYVRNHGGQAFKELVAKAVKPLDYLLSESLIKHDTNDTEGKQAVMADVFPYIANIDSQT 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L KG K Sbjct: 412 QRDDALKTLALPLWLDNSTIFR----YFRDYVKKGQIELVDTASTPLPTQDLPKGDAEK- 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL +LQ L ++ E + + LF+ + + I Sbjct: 467 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKLFTLYKSEGRLDETAIQS 519 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + D + AL R L Q + Sbjct: 520 VLSSQEYDIYSRLVVMS---------------DDEYKVQVPALIRKIRLHSLREQYKAHS 564 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 565 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 594 >gi|315195464|gb|EFU25851.1| DNA primase [Staphylococcus aureus subsp. aureus CGS00] Length = 599 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHEISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|84502757|ref|ZP_01000876.1| DNA primase [Oceanicola batsensis HTCC2597] gi|84389152|gb|EAQ01950.1| DNA primase [Oceanicola batsensis HTCC2597] Length = 618 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 199/565 (35%), Positives = 290/565 (51%), Gaps = 23/565 (4%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86 WD RK+N KGD+WA CPFH EK+ SFH +D KGFYYCF CH KGD +SFL F+ Sbjct: 2 WDMRKSNQAKGDWWAPCPFHQEKSASFHVDDRKGFYYCFGCHAKGDAISFLKDSENMGFM 61 Query: 87 ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 E+V+ LA AG+ +P DP+ K + + +L ++E A + L + YL+ Sbjct: 62 EAVEALAQEAGMQMPARDPRAAAKAEKRAELADVMEAAVRHYRMMLNSGAAAEARAYLER 121 Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206 RG+ E F++G+AP+ L LR + E+ I+ AGL+ D YD FRNR+ Sbjct: 122 RGLSPETQERFEIGFAPEGWQGLWTQLRNRDIPEDLILRAGLVKTSDRGGKPYDVFRNRI 181 Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 +FPIR +RG+ IAFGGR + + KYLNSPET LF KG++LYN A K Sbjct: 182 MFPIRDARGRCIAFGGRAMDPDDKAKYLNSPETELFDKGRSLYNHGPAREAAGK------ 235 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326 +I+ EGYMDV++L AG + V+ LGTA+TE QL +LW +SP V+ DGD Sbjct: 236 ----GRPLIVAEGYMDVIALSAAGFEGAVAPLGTAVTESQLAMLWAISPEPVVALDGDTA 291 Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386 GLRAA + + + L + G + F LL G+DPD I+ G A + ++ + PLVD+LW Sbjct: 292 GLRAAMRLMHVALPLMEAGKSLRFALLPEGKDPDDLIKAEGAKAMQAVLDRAFPLVDLLW 351 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 + TE +SF++P+ RA L+ L+ I I D LR +Y AI++ QLF+ Sbjct: 352 REATEGKSFDSPERRAALDRDLREKIRKIPDVSLRRHYGDAIKEMRYQLFRPQR------ 405 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 R + S L + LRE+ ++ T+I PA + L Sbjct: 406 ---QGSWTPRRKSQPIRPTTKASFLTSAGPMAEHQLRESVIVATIIATPAAVSGFEGPLE 462 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + + +L ++ + + + + E I + L GE L +L A + Sbjct: 463 LMDCADPDLGRMRDIVLTHGSDGPDAVNEAISRELG----GEALDRLMSHPHVAICPTLR 518 Query: 567 TEANIVDVRQGYQQALALYKRFRLL 591 N+ + + LA K R L Sbjct: 519 KAGNVELAQMTLAEELAKLKARRGL 543 >gi|168187757|ref|ZP_02622392.1| DNA primase [Clostridium botulinum C str. Eklund] gi|169294409|gb|EDS76542.1| DNA primase [Clostridium botulinum C str. Eklund] Length = 597 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 279/633 (44%), Gaps = 39/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I ++I + V R N + CPFH+EKTPSF + K Y Sbjct: 2 ISEEIIEKIKEQNDIVDVISESVKLKRTGRN-----FIGLCPFHNEKTPSFSVSQEKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ +F+ F+E+V+ L + + D K + + L ++ Sbjct: 57 KCFGCGEAGNVFTFVMKTKNLPFVEAVKYLGDKVNIHIEENDYKNQAYKNKNDKLYKINV 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A ++ +L+ +K+ Y RGI + I F LGYAP ++L +L+ KG++E Sbjct: 117 EAARYYFKNLQ--INKKATKYFTNRGIVNKTIRRFGLGYAPSGWHNLMNYLKNKGYTELD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G + + YDRFR R+IFP+ RG+VI FGGR L KYLNSPET +F Sbjct: 175 LVNAGLIIRG-KNNSIYDRFRERVIFPVFDYRGRVIGFGGRVL-DDSKPKYLNSPETDIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + S II+VEGYMD +SL Q G+ NVV+SLGTAL Sbjct: 233 KKGTNLYGLNFAIKNNK-----------SRTIIIVEGYMDCISLYQYGIDNVVASLGTAL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + +I++ +D D G A + + + G + + + G+DPD F Sbjct: 282 TYDQGKLLKRYVDKIIISYDADFAGQSATLRGLKI---LKKQGFDLKVLDIPEGKDPDEF 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +GK AF KLI ESLPLVD K + + + + IN + + + Sbjct: 339 IKNHGKEAFMKLIDESLPLVDYELKMARFGLDISNEEMLIKYVNNACEIINKL-NPIEKD 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + Q + R R KG + K + Sbjct: 398 IYIRKLSQETGLKEQAIYDLLNVKDRKNYIKDEKRYSKGNFGQ-------KLYVEPAYMK 450 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ +I + Q + + + + +K++ + + + + Sbjct: 451 TQRKLIKIMILNIESYDYVLQFVNEEDFIIDSHKKIFKLIKDQVNHNE----DNLKNIEK 506 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + R+ + + + D+ Y + + +K L KEE+ K+I Sbjct: 507 SIEIKCDDVESSREWTKIQQIKFSEDIDYKDLVNAYIKEIKKFK----LEESKEEVMKKI 562 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 A+G E++ L+ L ++ I + E Sbjct: 563 KYYEAQGLFEESLNLVKELEKIQNNIMAMNHCE 595 >gi|302333238|gb|ADL23431.1| DNA primase [Staphylococcus aureus subsp. aureus JKD6159] Length = 599 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKHYLQQIVAKNKER 598 >gi|33151867|ref|NP_873220.1| DNA primase [Haemophilus ducreyi 35000HP] gi|33148088|gb|AAP95609.1| DNA primase [Haemophilus ducreyi 35000HP] Length = 579 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 174/614 (28%), Positives = 285/614 (46%), Gaps = 49/614 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + +Y +CCPFH EK+PSF + +K F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----EYQSCCPFHHEKSPSFTVSPTKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDL 117 YYCF C G+ +SFL F E+V+ LAA+ G+ +P + + K + + +L Sbjct: 59 YYCFGCGAHGNAISFLMEYDKLEFPEAVEELAAMQGLEVPRENATHQAKSVVSYQAKRNL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ + F+ L + YL +RG+ + I F++G+AP+S ++ Sbjct: 119 YELLAQISQFYQQHLVQDSASQA--YLQQRGLSAEIISRFEIGFAPNSMDAVLCKFGINR 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +K+++ G+L +S YD+FRNR++FPIR RG+V+AFGGR + E KYLNSP Sbjct: 177 DEIQKLLDTGML-SQHDSGRVYDKFRNRVMFPIRDKRGRVVAFGGRVM-GDEKPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N V+S Sbjct: 235 ESATYHKGNELYGLFQALQ----------QNENPAALLVVEGYMDVVALAQFGVNNAVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T Q++ +++ + +++ C+DGD G AA++A + L +L G ++ F+ L GE Sbjct: 285 LGTATTGEQIQQMFRCTEQVICCYDGDRAGREAAWRAFENALPYLQDGRQLKFIFLPDGE 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSFIR GK FE + + L D L+ ++ + +++L IN I Sbjct: 345 DPDSFIRQQGKAGFEAYLQAGMSLSDFLFDNLIAQVDLSSKEGKSKLAALAVPLINRIPG 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR Y + +L L + + + + + Sbjct: 405 EMLRVYLRNMLGQKLGILDPAQLEAILPAKVPANRKSIAQALPIKRTPM----------- 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P ++Q A Q L L E+ + Sbjct: 454 -------RLLIALLLQNPELVQFVPDISALQSLQEPGFQLLVE-LIEVCREKVGISMGVL 505 Query: 538 HQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLL 591 + ++ L++L D V + S E + + +AL R L Sbjct: 506 LEHWRDKPHYRTLERLANWDHLVTPENVESTFIETLDFLYAKLVEKRIEALIAKDRMHGL 565 Query: 592 S-RQKEEIEKQIAQ 604 + +K+E+ I+Q Sbjct: 566 NAAEKQELALLISQ 579 >gi|307250748|ref|ZP_07532681.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306857216|gb|EFM89339.1| DNA primase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 580 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 176/615 (28%), Positives = 284/615 (46%), Gaps = 50/615 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KYLNS Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV NVV+ Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R GK FE + ++ L D L+ ++ + +++L IN I Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + + R + + Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P +++ A + + L L ++ Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505 Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590 + + ++ ELL + V + + E + + + L R Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565 Query: 591 LS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 566 LSAEEKQELVMLIAQ 580 >gi|49483811|ref|YP_041035.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA252] gi|257425687|ref|ZP_05602111.1| DNA primase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428348|ref|ZP_05604746.1| DNA primase [Staphylococcus aureus subsp. aureus 65-1322] gi|257430985|ref|ZP_05607365.1| DNA primase [Staphylococcus aureus subsp. aureus 68-397] gi|257433673|ref|ZP_05610031.1| DNA primase [Staphylococcus aureus subsp. aureus E1410] gi|257436587|ref|ZP_05612631.1| DNA primase [Staphylococcus aureus subsp. aureus M876] gi|282904144|ref|ZP_06312032.1| DNA primase [Staphylococcus aureus subsp. aureus C160] gi|282905971|ref|ZP_06313826.1| DNA primase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908881|ref|ZP_06316699.1| DNA primase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911200|ref|ZP_06319002.1| DNA primase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914369|ref|ZP_06322155.1| DNA primase [Staphylococcus aureus subsp. aureus M899] gi|282919338|ref|ZP_06327073.1| DNA primase [Staphylococcus aureus subsp. aureus C427] gi|282924663|ref|ZP_06332331.1| DNA primase [Staphylococcus aureus subsp. aureus C101] gi|283958326|ref|ZP_06375777.1| DNA primase [Staphylococcus aureus subsp. aureus A017934/97] gi|293503443|ref|ZP_06667290.1| DNA primase [Staphylococcus aureus subsp. aureus 58-424] gi|293510460|ref|ZP_06669166.1| DNA primase [Staphylococcus aureus subsp. aureus M809] gi|293531000|ref|ZP_06671682.1| DNA primase [Staphylococcus aureus subsp. aureus M1015] gi|295428140|ref|ZP_06820772.1| DNA primase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590894|ref|ZP_06949532.1| DNA primase [Staphylococcus aureus subsp. aureus MN8] gi|78099123|sp|Q6GGD7|PRIM_STAAR RecName: Full=DNA primase gi|49241940|emb|CAG40634.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA252] gi|257271381|gb|EEV03527.1| DNA primase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275189|gb|EEV06676.1| DNA primase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278415|gb|EEV09051.1| DNA primase [Staphylococcus aureus subsp. aureus 68-397] gi|257281766|gb|EEV11903.1| DNA primase [Staphylococcus aureus subsp. aureus E1410] gi|257283938|gb|EEV14061.1| DNA primase [Staphylococcus aureus subsp. aureus M876] gi|282313498|gb|EFB43893.1| DNA primase [Staphylococcus aureus subsp. aureus C101] gi|282317148|gb|EFB47522.1| DNA primase [Staphylococcus aureus subsp. aureus C427] gi|282321550|gb|EFB51875.1| DNA primase [Staphylococcus aureus subsp. aureus M899] gi|282324895|gb|EFB55205.1| DNA primase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327145|gb|EFB57440.1| DNA primase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331263|gb|EFB60777.1| DNA primase [Staphylococcus aureus subsp. aureus Btn1260] gi|282595762|gb|EFC00726.1| DNA primase [Staphylococcus aureus subsp. aureus C160] gi|283790475|gb|EFC29292.1| DNA primase [Staphylococcus aureus subsp. aureus A017934/97] gi|290920268|gb|EFD97334.1| DNA primase [Staphylococcus aureus subsp. aureus M1015] gi|291095109|gb|EFE25374.1| DNA primase [Staphylococcus aureus subsp. aureus 58-424] gi|291466824|gb|EFF09344.1| DNA primase [Staphylococcus aureus subsp. aureus M809] gi|295128498|gb|EFG58132.1| DNA primase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575780|gb|EFH94496.1| DNA primase [Staphylococcus aureus subsp. aureus MN8] gi|312437969|gb|ADQ77040.1| DNA primase [Staphylococcus aureus subsp. aureus TCH60] Length = 599 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|310643032|ref|YP_003947790.1| DNA primase [Paenibacillus polymyxa SC2] gi|309247982|gb|ADO57549.1| DNA primase [Paenibacillus polymyxa SC2] Length = 606 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 161/632 (25%), Positives = 276/632 (43%), Gaps = 38/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P D I+ +L H I + + +YV ++ CPFH EKTPSF + Sbjct: 7 NIPDDIIESVLQHHDIVDTVSKYVHLTKQGK-----YMKGLCPFHSEKTPSFTVTPDRQI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120 +YC+ C G+ + F+ + G SF E+V+ +A + +PL + + + L++ Sbjct: 62 FYCYGCGAGGNAIKFMMEIEGLSFPEAVRTMAEESHIPLGEWQGRDSSHQHPELDRLLQA 121 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+ + +H LKN K YL RG I+ F++GYAP+ ++ + L ++ F Sbjct: 122 YELTSKMYHFLLKNTEHGKPAMEYLRSRGFSDKIIDQFQIGYAPNRWDTIVQFLEKRSFD 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ + GL+ DRFR+R++FPI + G+VIAF GR L +G+ KYLNSPET Sbjct: 182 PVEMEKGGLISPRHEGDGYVDRFRDRIMFPIWNRNGKVIAFAGRILGEGQP-KYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF+K + LYN A ++K +L EGY DV+S +AGVQN V+++G Sbjct: 241 KLFNKSRTLYNLHHAKTSIRKL----------RQSVLFEGYGDVISAWEAGVQNGVAAMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE+ +L L +++C+DGD G AA K L G V L+S G DP Sbjct: 291 TALTEHHATMLKGLCDEVIICYDGDRAGQAAALKNFPL---LENAGLHVKVALVSDGMDP 347 Query: 360 DSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D FIR YG F+ ++I ++ V +N + R N I + Sbjct: 348 DDFIRQYGAERFQRQIIESAVSTVKFKLIYLKKNHILQEEEGRIAYSREALNVIAPLSSP 407 Query: 419 KLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + ++ F+ E + + + + + R + + Sbjct: 408 TEREVYLREVSAEVKVDFETLKQECNLLRQSLQKKQNFGDNNENGWNNGRHKKGQVSTPN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L + E LL ++ + + L D ++ + + ++L++ + + K Sbjct: 468 LLPAYHVAERRLLHWMMQDLEAAEYVEKHLGD-AFNIEDHAAIAAYLYAYYAQGKLPDTS 526 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + +L++ V + A + +Q R L Q Sbjct: 527 RFISSLQD-------DRLEKNVSSIMMMDAPGVWAPHILDDYIRQV-----RKFPLQEQL 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++ G+ + A + S + + Q Sbjct: 575 DLKREEMRTAERSGDFLRAAQIASEIIALERQ 606 >gi|254805302|ref|YP_003083523.1| DNA primase [Neisseria meningitidis alpha14] gi|304387053|ref|ZP_07369305.1| DNA primase [Neisseria meningitidis ATCC 13091] gi|254668844|emb|CBA06897.1| DNA primase [Neisseria meningitidis alpha14] gi|304338852|gb|EFM04954.1| DNA primase [Neisseria meningitidis ATCC 13091] Length = 590 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|84496805|ref|ZP_00995659.1| DNA primase [Janibacter sp. HTCC2649] gi|84383573|gb|EAP99454.1| DNA primase [Janibacter sp. HTCC2649] Length = 651 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 157/664 (23%), Positives = 269/664 (40%), Gaps = 54/664 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + I +++ +V G CPFHDEKTPSF + G Sbjct: 4 RINADDIQSVKERSSIEDVVRDHVTLRPGG----VGSLKGLCPFHDEKTPSFTVRPAVGA 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 Y+CF C GD +SF+ + +F E+++RLAA G+ L E ++ LI Sbjct: 60 YHCFGCGEGGDVISFVQKVEHLTFSETIERLAAKIGMELRYEEGGGPREGGIGKRSRLIE 119 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 VA +F+ +L + ++ +RG + E F +G+AP L HLR+KGF Sbjct: 120 AHRVAEEFYSAALVDRPDARPARDFIRDRGFNRAIAEQFGMGFAPRGGEDLTRHLREKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 SE++++ AGL G S YDRFR RL++PIR G + FG R L + + KYLN+ Sbjct: 180 SEDEMVTAGL--SGRGSRGLYDRFRGRLMWPIRDVTGDTVGFGARRLLDDDRIAAKYLNT 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 ET ++ K LY A + ++VEGY DV++ +GV V+ Sbjct: 238 SETPIYKKSMVLYGLDAAKKAIA----------GDRQAVIVEGYTDVMAAQLSGVAGAVA 287 Query: 297 SLGTALTEYQLRLLWKLSP--------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 + GTA +++L ++ +++ FDGD G +AA KA ++ Sbjct: 288 TCGTAFGIDHIKILRRIMRDEADGAPAKVIFTFDGDAAGQKAAMKAFGEDQRWA---SQS 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP G A + L+ +++P+ + + + TP+ R + + Sbjct: 345 FVAVAPDGMDPCDLRLAKGGEAVKALVDDAVPMFEFAVRTTMKRFDLETPEGRVQAMQAV 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK---------------- 452 IN I+D LR Y +++ L ++ + E GR + Sbjct: 405 APIINSIRDSSLRPEYMRSVAGMLGVEVEQVLNEVQRAGRIKAREGADAASGPSGRAADR 464 Query: 453 -NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRY 510 A D P+ + S+L L E LL L+ +P E + + + Sbjct: 465 TPASTDDVPEPNAQEGASALPPPNLRDPVVNNERQLLQALLQYPTRFTTETIDAIPPVAF 524 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 ++ + + + E ++ L ++ A L + + Sbjct: 525 TAPAHSAIFDGVRTVAGRAADLSTAGWVAAVSEAA-SLAVRGLLAELSVAPLPT-KVDPT 582 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGEAEKTAILISILHEVHIQI 628 Q Y ++L + LSRQ + I ++ T + + E L E+ + Sbjct: 583 SGLPPQRYLESLVIGVHDSGLSRQIADETAAIRRLQNTPEPDQEALRARSRRLIELEMNR 642 Query: 629 HQIE 632 ++ Sbjct: 643 ARLR 646 >gi|282916832|ref|ZP_06324590.1| DNA primase [Staphylococcus aureus subsp. aureus D139] gi|283770638|ref|ZP_06343530.1| DNA primase [Staphylococcus aureus subsp. aureus H19] gi|282319319|gb|EFB49671.1| DNA primase [Staphylococcus aureus subsp. aureus D139] gi|283460785|gb|EFC07875.1| DNA primase [Staphylococcus aureus subsp. aureus H19] gi|298694844|gb|ADI98066.1| DNA primase [Staphylococcus aureus subsp. aureus ED133] Length = 599 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|20808175|ref|NP_623346.1| DNA primase [Thermoanaerobacter tengcongensis MB4] gi|20516767|gb|AAM24950.1| DNA primase (bacterial type) [Thermoanaerobacter tengcongensis MB4] Length = 600 Score = 360 bits (923), Expect = 5e-97, Method: Composition-based stats. Identities = 176/634 (27%), Positives = 293/634 (46%), Gaps = 44/634 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I YV+ R ++ CPFH EKTPSF + +K Sbjct: 1 MAYTRESIEKVIEANDIVDVISDYVELKRAGK-----EFRGLCPFHREKTPSFMVSPTKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + SF E+++ LA AG+PL VD E+ ++ + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLSFKEAIEFLAERAGIPLEEVDLSEEEAKRKKIIEEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 R+ ++A FFH L + + YL RG+ S I+ F +GYAP S L L+ KG+ Sbjct: 116 RVNKIAALFFHRKLFSEEGVKALEYLKSRGLSSTTIKKFGIGYAP-SNDDLLNFLKGKGY 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E + +AGL++ S YDRF++R++FPI RG V+ FGGR L KYLN+PE Sbjct: 175 KENFLSKAGLVV--YKSGKYYDRFKDRVMFPIIDVRGNVVGFGGRAL-DDSLPKYLNTPE 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 232 TEIFKKGKTLFAINFAKK------------TQDDKFIIVEGYMDAISLHQAGIDCAVASL 279 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q RL+ + +V+ +D D+ G+ A + +D+ + + + G+D Sbjct: 280 GTALTEDQARLIKRYKKNVVIAYDADEAGVNATLRGLDI---LEKLNINIKVLSIPEGKD 336 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +L+ + L++ K + F ++R + + I I D+ Sbjct: 337 PDEFIKKEGSEAFRRLVENAESLIEFKSKIFKKGFDFEKVEDRIIYVKKIASEIAKISDE 396 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y A Q TE + + + + + + R S K Sbjct: 397 VKREVYISAAAKTAQIPENAVRTEVDRFVKRETEKKQKFMYRTGNIRHNIYSSSKISP-- 454 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ L++ + + + ++++L+ ++ + S K ++I Sbjct: 455 -----EKYLIALLLHDNNLYHKIKGVIKPDMLEDSKLKPIFEEIVSSLEGGKQVQIKDIV 509 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E L+ + V+ D+ Q L L+R++EEI Sbjct: 510 YLIQEE--DNLISDFNDIVKALF--------EAEDLSQMVDDILQKIL-LNNLARKREEI 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 K+I G+ EK L+ L ++ +I+ Sbjct: 559 RKEILNAHLLGDVEKERELLIKLQNCEKEMLKIK 592 >gi|294085799|ref|YP_003552559.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322] gi|292665374|gb|ADE40475.1| DNA primase [Candidatus Puniceispirillum marinum IMCC1322] Length = 560 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 178/584 (30%), Positives = 274/584 (46%), Gaps = 40/584 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P +FI+DL +P+S++IG+ V R+ + CPFH EKTPSF D G Sbjct: 1 MAVPPEFIEDLRQRVPLSDIIGKRVKLVRKGR-----RFSGLCPFHSEKTPSFSVVDDDG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C V GD +SFL + G F+E+V+RLA +AG+ +P+ P+ K + + + + Sbjct: 56 FYHCFGCGVHGDAISFLREIDGLEFMEAVERLADMAGMAMPIGAPQDPKVTQQRKAALDI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E FF +L K YL R +D+H I+ ++LGYAP R LR L KGFS+ Sbjct: 116 LETTATFFRAALDREDGKDAARYLLNRNLDAHIIQTYRLGYAP--RGGLRAALSAKGFSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ AG+L D + YD FR+R++FPI + +G+VIAFG R L KYLNS E Sbjct: 174 ADMLAAGVLRKSDRDGSLYDYFRDRVMFPIENRQGKVIAFGARAL-GDAQPKYLNSGEGP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F K LY + A L++ + +++ EGYMDV+++ ++GV V+ LGT Sbjct: 233 TFSKKAVLYGWVQAREGLRRQL----------PLVIAEGYMDVIAIHKSGVAAAVAPLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+ L+WKL VLCFDGD G +A +A++ L L PG F L G+DPD Sbjct: 283 ALTPEQIVLVWKLHNEPVLCFDGDAAGQKAQMRALERFLPLLEPGKTARFATLPAGKDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G F+ +I + LVD +W + P++RA+ +++ I +I + ++ Sbjct: 343 DVLREAGYEGFKNIIATARSLVDTMWDGIMADHDVRQPEQRAQFWQAIRSQIRNIGNNQV 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +S I +R+ + T+ G R G R + Sbjct: 403 RSAFSDEIENRIAAM----RTQMRGGTMPMAARTARRPSTGMINRHKALLALLLAHPALI 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S ++ L+ I + L+ + + ++ Sbjct: 459 SGA------------------FETLSMIDSGDERLEMIKKAAIDALISDPDLDAAALNYH 500 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 L F + L L A L N + +AL Sbjct: 501 LQGLNFTDELADLTGADMKARLPFDPATMNSDTAEAHLGELVAL 544 >gi|239940962|ref|ZP_04692899.1| DNA primase [Streptomyces roseosporus NRRL 15998] gi|239987440|ref|ZP_04708104.1| DNA primase [Streptomyces roseosporus NRRL 11379] gi|291444399|ref|ZP_06583789.1| DNA primase [Streptomyces roseosporus NRRL 15998] gi|291347346|gb|EFE74250.1| DNA primase [Streptomyces roseosporus NRRL 15998] Length = 643 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 148/668 (22%), Positives = 266/668 (39%), Gaps = 62/668 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + LI Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +L++ + +L ERG D A F++GY+P L +LR KGFS Sbjct: 120 AHQAAAEFYVRALESPEAEIGRKFLAERGFDQDAATHFRVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL D DRFR RL++PI + G ++ FG R L ++ KYLN+PE Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TPVYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDSAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + ++ TP RA + Sbjct: 345 PDGMDPCDLRLVKGDDAVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------------------- 454 IK ++ + + + L Q+++ W ++ Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLARWARDKGGDQGDRGGRGGPQGRGPR 464 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 Q+ S L E LL + PA++ + + Sbjct: 465 GGAPQQTAPAPAPAFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524 Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + ++ + + + L+ +L +V Sbjct: 525 YAAVRRCIEEAGGAEQGIADDRAYLGAVLDAAPDNTVRNLVTELAVEVFHGRT------- 577 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + Y ++ R R + R+ +++ +A++ + A + + + Sbjct: 578 ----IDETYAGMHLVHVRLRAVDRRIADVQSSLARLGNHVAPQDLAAAQNEVWVLQQYAQ 633 Query: 630 QIESQEAM 637 + + A Sbjct: 634 TLRAHGAA 641 >gi|86739989|ref|YP_480389.1| DNA primase [Frankia sp. CcI3] gi|86566851|gb|ABD10660.1| DNA primase [Frankia sp. CcI3] Length = 629 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 145/647 (22%), Positives = 259/647 (40%), Gaps = 42/647 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + PI++++ ++V N + CPFHDEK+PSF+ N + G Sbjct: 4 RIRDADVALVRERSPIADVVAEHVQLRPAGRN----ELVGLCPFHDEKSPSFYVNAATGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 ++CF C GD SF+ + G +F E+ +RLA AGV L + + L+ Sbjct: 60 FHCFGCQQGGDVYSFVREIDGLTFREAAERLARRAGVALTYEGGGTTDRTVSSQRQRLLE 119 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F+ L++ A + +L RG D F++GYAP +L HL + F Sbjct: 120 THRAAAEFYAEQLESQASARAGWDFLAARGFDLTTAARFEVGYAPTGWDTLTRHLLARRF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYL 234 + E+++ GL G DRF +RL++PIR G+V+ FGGR L++ ++ KYL Sbjct: 180 TGEELVLGGLAKQG-ARGGLIDRFHHRLMWPIRDLAGEVVGFGGRRLAEDDAPNAGPKYL 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+P+T LF K LY A + + +++VEGY DV++ AGV Sbjct: 239 NTPDTPLFKKANLLYGADLARRDIARRY----------QVVVVEGYTDVMACHLAGVTTA 288 Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 V++ GTA + ++ + ++ FDGD G +AA +A + + Sbjct: 289 VATCGTAFGSEHVAVVRRLLMDSDERRGEVIFTFDGDAAGQKAALRAFEHEERFAT---Q 345 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + G DP G A L+ +PLV+ + + NT + R Sbjct: 346 TFVAVEPSGRDPCELWMSGGDGAVRDLVASRVPLVEFAIRGVLDRYDLNTTEGRLAALDA 405 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 +N +KD LR+ Y+ + L L ++++ R + R + P +R Sbjct: 406 AAPLVNRLKDAALRHRYAVNLDRWLGFLDERFVVGRVAEHRSRQGGERAGARSAPMRRRG 465 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + E L + +P + + L + + + + Sbjct: 466 A------GADDAAVIVEREALKLAVQYPGLAGPMFDTLGPEMFTVPAHRAVRDLIAEAGG 519 Query: 528 -EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E+ + E ++L R V + + DV Y Sbjct: 520 VCAGLARSGEVTTWVTELAAAASEEELRRFVTALAVERVLCDH---DVDDRYVDEQMSRV 576 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++R+ +++ ++ ++ +AE L + HQ+ Sbjct: 577 QELHVTRRITDLKSRVQRLNGVTDAEALRRAFGELIALEQHKHQLRE 623 >gi|319410766|emb|CBY91150.1| DNA primase [Neisseria meningitidis WUE 2594] Length = 590 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 293/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQ+I FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQIIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ T+ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLTDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|58583751|ref|YP_202767.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625564|ref|YP_452936.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574976|ref|YP_001911905.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428345|gb|AAW77382.1| DNA primase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369504|dbj|BAE70662.1| DNA primase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519428|gb|ACD57373.1| DNA primase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 582 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 169/631 (26%), Positives = 270/631 (42%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATRFFQRQL--DGSERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAPAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPMLTQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + + R + + SLV+ Sbjct: 405 PEGAFGDLMKQELSRLTGVGTS---------ASAQQSTPKPRPPARMAAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAASLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L+ L Q + +LL ++ Sbjct: 503 ALLEHFAERDEQAALQTLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|295424883|ref|ZP_06817598.1| DNA primase [Lactobacillus amylolyticus DSM 11664] gi|295065449|gb|EFG56342.1| DNA primase [Lactobacillus amylolyticus DSM 11664] Length = 602 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 284/632 (44%), Gaps = 43/632 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEDFINEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A A +P+P + + L+++ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDNLTFPESVEQVANFAHIPMPSSYGQTPVQMSP---LLKIH 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + AT F+HH L + +R Y ER + ++ F++GYAP+S L +LR KG+S+ Sbjct: 116 QDATSFYHHVLLTTQAGERGMKYARERELSEELLDHFQIGYAPNSENVLLTYLRGKGYSD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL I + +DRFR+RL+FP+ G+VI F GR +S+ ++ KY+NSPET Sbjct: 176 DNLAKSGLFIQSKDG-RLFDRFRDRLMFPLGDESGKVIGFSGRRISQDKTEAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A ++ ++L EGYMDV+S +AGV + ++S+G Sbjct: 235 EIFTKSKALFHFSEAKKAARR----------EGHLVLYEGYMDVISAYKAGVHSGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L + S I++ +DGDDPG+ A +A + G + V+L DP Sbjct: 285 TSLTDQQVYMLKRTSRNIIVNYDGDDPGVHAEERAAKMF--QQAGGFNLGIVVLPEKLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + + +L D KR + + ER I + + Sbjct: 343 DEYVKKYGAEKYLEEVKGALSPTDFFLKRLAKKYNLKNDRERITFLSEAVKQIAQLSNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS-- 477 + Y + + R + R++ + P+ R ++ V+ + + Sbjct: 403 EQDLYIDKLAKQQGVSKDSLKINLMRERRRLFRANRNKGRYQPNNRKETTNPVEFEDNQD 462 Query: 478 ---KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + LL ++ ++ + + ++ + Sbjct: 463 TVQPKYDSAQTRLLYLFMHSEQARDYILEQ--HFLFPDQGYAQIAELWLKFIQTHEETTI 520 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E+ G ++ R++ + + + R ++ Q Sbjct: 521 NSFLDFIPEQLQGIIVNAEMREM-------------PQNFSGREIDEIISSLKKRDINSQ 567 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +++ +I + + ++ L + ++ Sbjct: 568 LNKLKNKIEDAERRNDNQEILNLTQKILQLKR 599 >gi|220932078|ref|YP_002508986.1| DNA primase [Halothermothrix orenii H 168] gi|219993388|gb|ACL69991.1| DNA primase [Halothermothrix orenii H 168] Length = 599 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 185/608 (30%), Positives = 292/608 (48%), Gaps = 36/608 (5%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F+ +L + I +L+ YVD + N Y CPFH EKTPSF N + F+YC Sbjct: 6 EKFLDELKGSLDIVDLVSDYVDLKKVGKN-----YVGLCPFHQEKTPSFTVNPERQFFYC 60 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C V GD +SFL + +F ESV+ LA +G+ +P DP+ ++ + + L ++ + Sbjct: 61 FGCGVGGDVISFLMEIENITFKESVKMLARRSGMEVPGDDPRHRQQLREREKLFKINHLT 120 Query: 125 TDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 F+H+ L+ + + YL +RG I+ F LGYAPD L + L KGF E ++ Sbjct: 121 AKFYHYLLLETDQGLKAINYLKKRGFTKKDIKKFGLGYAPDRWDGLLKFLTGKGFEEGEL 180 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETILF 242 ++AGL + N+ YDRFR+RLIFPI +SRG+V+AFGGR + E KYLNSPET +F Sbjct: 181 VKAGL-VLLSNNNNYYDRFRDRLIFPIFNSRGEVLAFGGRLIDSDESQPKYLNSPETPVF 239 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +KGKNLY A + ++K SS +I++EGY DVL Q G+ NVV+SLGTAL Sbjct: 240 NKGKNLYGLNWAKHEMRK----------SSEVIIMEGYTDVLRAHQMGINNVVASLGTAL 289 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RL+ + S + +D D G +A + +D+ G V V L + DPD + Sbjct: 290 TSEQARLIARYSNLAYISYDADTAGTKATLRGLDI---LKNAGLNVKVVDLPQDSDPDEY 346 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G F L+ E++ LV+ K+ EN N + E L + ++D+ R Sbjct: 347 LRKKGVDEFYTLLEEAVDLVEFKIKQGLENIDLNNVQGKIEGTRKLVKILATLEDRIERE 406 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y Q + D+ + +E + K KN+ R K ++R + K + Sbjct: 407 IYIQNVSDKFNLDPEILKSEVEKLIKINKNKDKNSSRRYTKKSNRRYFTNKNNKTNSFRS 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E LL I+ P + E+ + + + E K L +I Sbjct: 467 IHFIEEKLLHAFIDFPELRNTIVNEINTDMFSKE-----YQEVAEFLWENKDSLKGDIIN 521 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + + +L + + + E IV+ ++ +Y L ++ +E Sbjct: 522 NIESKVLRNKVMELM--INNKTVQPEGVERLIVNFKEE-----NVYNIKVGLYKKLQENN 574 Query: 600 KQIAQVTA 607 + ++ Sbjct: 575 LNVNRLNK 582 >gi|297626396|ref|YP_003688159.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922161|emb|CBL56729.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 622 Score = 359 bits (922), Expect = 7e-97, Method: Composition-based stats. Identities = 149/644 (23%), Positives = 250/644 (38%), Gaps = 48/644 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I N++G YV NA G CPFHDEKTPSF ++G Sbjct: 4 RINDEDIALVRERARIDNIVGAYVTL----RNAGGGSLKGLCPFHDEKTPSFQVTPARGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 +YCF C V GD ++F+ + +F E+VQ LA GV L V D K ++ ++ Sbjct: 60 FYCFGCGVGGDVITFMQKIDNLTFTEAVQTLADKVGVQLRIVDDGKPSLPAGLRVRIMEA 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A +F+ +L LD RG D A E F +GYAP +L HL GF + Sbjct: 120 NKLAAEFYSKALAAPEALEARRMLDGRGFDRPAAEHFGVGYAPRDGRALHRHLNHAGFRD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 ++++ AGL+ + D F+ R+++PI+ S V+ FG R L + KY+N+PE Sbjct: 180 DELVSAGLIREHGGW----DYFQGRVMWPIKDSGASVLGFGARHLYDDDRLPAKYINTPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K + +++EGY DV+S AGV V+ Sbjct: 236 TPVYKKSHVLYGLDLARQNIGKKL----------QAVVMEGYTDVMSAHLAGVDTAVAVC 285 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA RLL +L IV FDGD G AA K L + Sbjct: 286 GTAFGPDHARLLQRLMGNNDSTQGEIVFTFDGDKAGQAAALKVYKLDRSFTT---QTYVA 342 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A +L+ PL + + D R Sbjct: 343 VEPNGLDPCDLRMAKGDAAVRELVGRREPLYRYVMAHTVAGYDLDRADGRVAAVRAAAGM 402 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--- 468 + I+D L Y + + + + R S+ Sbjct: 403 LASIRDANLVGEYVRDLSRLVGMDVDEVRRILKQARNQGAGGRREPPVPVVSEDADPVEP 462 Query: 469 -SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S + + E L ++ HP + + ++ + + + L+ + S Sbjct: 463 GDSPGWPDRNDRNLDVERGTLKLMLQHPTLFDTAWNGVSTSDFTHPAFRALFGAILS--- 519 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 ++P L + EL++QL+ + E + +GY A + Sbjct: 520 --TPYVPTGWTDSLQQATGDELVRQLE--------IALLVEPILRSPDEGYASAYTSRLK 569 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +R ++++ ++ + + + + L ++ ++ Sbjct: 570 LLTTARAIDDLKSRLQRTNPLQDKDAYDAMFMKLLDLETSRKKL 613 >gi|57651955|ref|YP_186459.1| DNA primase [Staphylococcus aureus subsp. aureus COL] gi|87161696|ref|YP_494217.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195370|ref|YP_500174.1| DNA primase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221677|ref|YP_001332499.1| DNA primase [Staphylococcus aureus subsp. aureus str. Newman] gi|161509791|ref|YP_001575450.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140018|ref|ZP_03564511.1| DNA primase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|282920111|ref|ZP_06327836.1| DNA primase [Staphylococcus aureus A9765] gi|284024621|ref|ZP_06379019.1| DNA primase [Staphylococcus aureus subsp. aureus 132] gi|294848593|ref|ZP_06789339.1| DNA primase [Staphylococcus aureus A9754] gi|304380849|ref|ZP_07363509.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|78099122|sp|Q5HFJ8|PRIM_STAAC RecName: Full=DNA primase gi|57286141|gb|AAW38235.1| DNA primase [Staphylococcus aureus subsp. aureus COL] gi|87127670|gb|ABD22184.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202928|gb|ABD30738.1| DNA primase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374477|dbj|BAF67737.1| DNA primase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368600|gb|ABX29571.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|269941052|emb|CBI49436.1| DNA primase [Staphylococcus aureus subsp. aureus TW20] gi|282594459|gb|EFB99444.1| DNA primase [Staphylococcus aureus A9765] gi|294824619|gb|EFG41042.1| DNA primase [Staphylococcus aureus A9754] gi|302751393|gb|ADL65570.1| DNA primase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340576|gb|EFM06510.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198743|gb|EFU29071.1| DNA primase [Staphylococcus aureus subsp. aureus CGS01] gi|320144090|gb|EFW35859.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314238|gb|AEB88651.1| DNA primase [Staphylococcus aureus subsp. aureus T0131] gi|329728370|gb|EGG64807.1| DNA primase [Staphylococcus aureus subsp. aureus 21189] Length = 599 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|307261954|ref|ZP_07543612.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868365|gb|EFN00184.1| DNA primase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 580 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 284/615 (46%), Gaps = 50/615 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KYLNS Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV NVV+ Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R GK FE + ++ L D L+ ++ + +++L IN I Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + + + + + Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P +++ A + + L L ++ Sbjct: 455 --------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505 Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590 + + ++ ELL + V + + E + + + L R Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565 Query: 591 LS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 566 LSAEEKQELVMLIAQ 580 >gi|283470840|emb|CAQ50051.1| DNA primase [Staphylococcus aureus subsp. aureus ST398] Length = 599 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIARNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPVNYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|241663619|ref|YP_002981979.1| DNA primase [Ralstonia pickettii 12D] gi|240865646|gb|ACS63307.1| DNA primase [Ralstonia pickettii 12D] Length = 603 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 176/643 (27%), Positives = 286/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G S++E+++ LA G+ +P P + E+ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR--Q 175 ++ A D + L++ YL RG+ F LGYAPD SL + Sbjct: 117 GDVMARACDHYRKQLRS--APNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYR 174 Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + + +IEAGL+I+ + + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 EDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFDYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H + F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDSF+R G AF + + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPSEHDPDSFVREEGTEAFAREVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 404 LLSAMPAGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ A + +L + L L Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDTDARAQLTAPQLPQGEVLAGLLAECDA 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V + + + A+ Sbjct: 510 AGPEVHFGAFIERLGQTPYAEAFAGLRTAV-------LQDDIELEPAISEFDTAVQKML- 561 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ E +++++ + G+ +K + L E+ + Sbjct: 562 AEPLKRELEMLQRKM-EAGHAGDEDK--ERMRWLVGEISRRRQ 601 >gi|308389680|gb|ADO32000.1| DNA primase [Neisseria meningitidis alpha710] Length = 590 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + +++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|258423990|ref|ZP_05686872.1| DNA primase [Staphylococcus aureus A9635] gi|257845611|gb|EEV69643.1| DNA primase [Staphylococcus aureus A9635] Length = 599 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 264/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEKALTYLLERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISFMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDYVNVINENGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|218768517|ref|YP_002343029.1| DNA primase [Neisseria meningitidis Z2491] gi|9910820|sp|P57028|PRIM_NEIMA RecName: Full=DNA primase gi|121052525|emb|CAM08864.1| DNA primase [Neisseria meningitidis Z2491] Length = 590 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 182/601 (30%), Positives = 287/601 (47%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLTQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 ++ + + + E + ++ R + E + + + G ++ L K + L + Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|251793983|ref|YP_003008715.1| DNA primase [Aggregatibacter aphrophilus NJ8700] gi|247535382|gb|ACS98628.1| DNA primase [Aggregatibacter aphrophilus NJ8700] Length = 598 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 163/598 (27%), Positives = 276/598 (46%), Gaps = 45/598 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI D+L + I +LI V + DY ACCPFH EKTPSF +D K FY Sbjct: 5 IPRTFIDDILTKVNIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQTD 116 +CF C G+ +SFL F+E+V+ LA G+ +P + + + + + Sbjct: 60 HCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNEGGKQVGYQTKRN 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ L + YL +RG+ + IE F++GY P++ ++ + Sbjct: 120 LYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEIIERFQIGYVPNAMDTVYRQFGKT 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+ + G+L D YDRFRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 178 REEQQKLFDLGMLSRNDRGNI-YDRFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+ +HKG LY F AL +S +++VEGYMDV++L Q GV V+ Sbjct: 236 PETVTYHKGSELYGLFEALQA----------DDSPQKLLVVEGYMDVVALAQFGVDYAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++LL++ + +++ C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 286 SLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 345 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+FIR +GK FE+ + + L + L+ T F++ + + +L I I Sbjct: 346 EDPDTFIRQFGKEGFEEYLNNAQSLSEFLFAHLTPQVDFSSKEGKNKLAALAIPLIKQIP 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR + +L L + + + + + + Sbjct: 406 GDVLRLDLRNTLAKKLGILDSTQLESLIPNQQKTENTPTAQPIQFKRTPM---------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P +++ + + L++ + + E+ + Sbjct: 456 --------RVLIALLLQNPELVKFVPDLESFRSLNEPGYD-LFAEMTALCREKVGISSGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + + L++L + +R Y Q + + + + Sbjct: 507 LLEHWRDTPQQNTLEKLATW-NHLVEEDKIEDTFRETLRYFYLQIIDKRINWLIAKDR 563 >gi|256823390|ref|YP_003147353.1| DNA primase [Kangiella koreensis DSM 16069] gi|256796929|gb|ACV27585.1| DNA primase [Kangiella koreensis DSM 16069] Length = 592 Score = 359 bits (921), Expect = 9e-97, Method: Composition-based stats. Identities = 163/609 (26%), Positives = 268/609 (44%), Gaps = 41/609 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI +LL + I +LI V + N Y ACCPFH EKTPSF + K FY Sbjct: 4 IPQHFIHELLARVDIVDLIDSRVPLKKTGAN-----YKACCPFHGEKTPSFTVSQDKQFY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C + G+ + FL F ++V+ LAA+ G+ +P + K K+ T L L+E Sbjct: 59 HCFGCGLHGNAIGFLMEYDRLEFPDAVEELAAMMGMEVPREETVSNKP-KVDTSLYDLME 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL-RQKGFSEE 181 +++ LKN K YL RG+ + F +GY P +L + + + Sbjct: 118 KVANYYQKQLKNN--KAAIDYLKSRGLSGEIAKQFAIGYVPGEWRNLETVFPKLQQDKKL 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + + YDRFR+R++FPI+ RG+VIAFGGR + +GE KYLNSPET + Sbjct: 176 QQQLVDCGMLIRKDKSLYDRFRDRIMFPIKDKRGRVIAFGGRVMGQGEP-KYLNSPETPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK LY + A +K R +++VEGYMDV++L Q + V++LGTA Sbjct: 235 FHKSNELYGLYQARQANRKLSR----------LLIVEGYMDVVALAQFDINYAVATLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T L+ L++ + +VLCFDGD G AA +A++ L + G + + L GEDPDS Sbjct: 285 TTSSHLQQLFRAARELVLCFDGDRAGRDAALRALEHGLSQMREGREIRLMFLPDGEDPDS 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R GK FE++I E+ PL + + + + + R +L K ++ I D Sbjct: 345 MVRKVGKEQFEQMIGEATPLFEFILEHLSSQVDLGSVSGRGQLVHLAKPYLDKITDPIYH 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 ++S A+ ++ K + + + P + QS L Sbjct: 405 EFFSSALAEKANLSESKLAAIIEA-------PTQPQHPRKPEKSTPQSPKANKTL----- 452 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + L+ P++ + + L L + + + Sbjct: 453 ---QLAITLLLQQPSLALAINNYGWLQTLPDKGSKLLHQ-LLEIIHKTPKINTSMLLEHW 508 Query: 542 CER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L L R+ + +++ + L ++ R+ Q + E+ Sbjct: 509 RDNTKLYDRLASLAMSEREERIQGN----EQQELQDCINRLLLHARKIRVDYLQHKAAEQ 564 Query: 601 QIAQVTAKG 609 + Sbjct: 565 GLTNQEKSE 573 >gi|320140553|gb|EFW32407.1| DNA primase [Staphylococcus aureus subsp. aureus MRSA131] Length = 599 Score = 359 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFVGSEATLKTGQN---LLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|300310202|ref|YP_003774294.1| DNA primase [Herbaspirillum seropedicae SmR1] gi|300072987|gb|ADJ62386.1| DNA primase protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 359 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 182/638 (28%), Positives = 292/638 (45%), Gaps = 62/638 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G +SFL G F+E+V+ LA G+ +P + P +++EK L Sbjct: 57 HCFGCGAHGTAISFLIEYSGMGFVEAVKDLAQNVGMVVPEREDSIPLAQRQEKQAKSMAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A DF+ H L++ + YL RG+ F LGY+PD SLR+ Sbjct: 117 SDVMTRANDFYRHQLRS--AQPAIAYLKGRGLTGEIAARFGLGYSPDEWDSLRQVF--PD 172 Query: 178 FSEEKIIEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 + E ++E+GL+ID YDRFR R++FPIR+++GQVI FGGR + GE KY Sbjct: 173 YDNEALVESGLVIDKSEEGGAHRKRYDRFRGRIMFPIRNTKGQVIGFGGRVMDGGEP-KY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF KG LY F A ++ + + ++ EGYMDV++L Q G Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFPQ 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA T ++ L + + +++ FDGD+ G RAA +A++ L H + F+ L Sbjct: 282 AVATLGTACTPIHVQKLVRQTDQVIFSFDGDNAGRRAARRALEACLPHASDNKTIKFLFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 + DPDS++R G AFE+ I E+LPL L + TP+ RA + K + Sbjct: 342 PKEHDPDSYVREMGAPAFEEQIREALPLSQFLLREIIGENDLRTPEGRAHAQFAAKPLLQ 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR +++ Q E K AR R S+R L Sbjct: 402 ALPASALRLQIVRSVAQ----ATQSTPAELEVLFELEKPVARVRAAPARSKRTAPVGL-- 455 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVE-QKY 531 E ++ L+ HP + + L I + ++ + L + Sbjct: 456 ----------ERQIMRLLVAHPQLAADLDAGALEAIARIAPDQAEMLTHLVGVAQGMGEQ 505 Query: 532 FLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L E F ++ ++ A +E+ VR A+ R R Sbjct: 506 ANFAALVEHLREGGPEFDSMIAEIA----------AESESEFDVVRAEMGGAIR-QARIR 554 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 L + + + + + + + + L+ + Q Sbjct: 555 ALDEEMQMLVT--SNLRTEEDRNRYRELMQRKEWLKRQ 590 >gi|329733241|gb|EGG69578.1| DNA primase [Staphylococcus aureus subsp. aureus 21193] Length = 599 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|258450609|ref|ZP_05698671.1| DNA primase [Staphylococcus aureus A5948] gi|257861767|gb|EEV84566.1| DNA primase [Staphylococcus aureus A5948] Length = 599 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 263/632 (41%), Gaps = 38/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQN---LLQQGLNVFIIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + ++ E N D+ G + + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQ--FNQAPANYYPEDEYGGYIEPEPIGMAQFDN 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E A L L+ Y+ + + N + ++ L + E + + Sbjct: 460 LSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQYNISD 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 Q + E L L++ + + Y + + E Sbjct: 520 AVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET-----IE 566 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + T G+ E + + + + Sbjct: 567 SLNHKLREATRIGDVELQKYYLQQIVAKNKER 598 >gi|319785805|ref|YP_004145280.1| DNA primase [Pseudoxanthomonas suwonensis 11-1] gi|317464317|gb|ADV26049.1| DNA primase [Pseudoxanthomonas suwonensis 11-1] Length = 577 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 175/623 (28%), Positives = 279/623 (44%), Gaps = 53/623 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL I ++G V R+ +Y A CPFHDE+TPSF+ + +K F Sbjct: 3 RLPDAFIDDLLARSDIVEIVGSRVPLKRKGR-----EYTAPCPFHDERTPSFYVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G +SFL F+++V+ LA AG+ LP + ++ + Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVEELARRAGMELPKDTRAGPQDNDLRDQ-YAAL 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A F L + +R YLD RG+D+ F +GYAPD +L++ L + Sbjct: 117 EAAARLFQRHLAES--QRARDYLDSRGVDADTRARFAIGYAPDGYSTLKDTLGTDERRLK 174 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + G+L + YD+FR+R++FPI RG+VIAFGGR L K S KYLNSPET L Sbjct: 175 LLERTGMLSRNERGH-VYDKFRDRVMFPIHDRRGRVIAFGGRVLDKDASPKYLNSPETPL 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG+ LY + A QK R +++VEGYMDV++L Q GV V++LGTA Sbjct: 234 FHKGRELYGLWQAKQANQKLER----------LVVVEGYMDVVTLFQFGVTQGVATLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL++ +P + CFDGD G RAA++A++ VL + G + F+ L GEDPD+ Sbjct: 284 TTADHAELLFRNAPDVYFCFDGDAAGRRAAWRAVESVLPRMKDGRQAFFLFLPDGEDPDT 343 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G T F+ + ++ PL + + + NT D RA L + + + D Sbjct: 344 IVRKEGATGFDARLAQATPLSQFFFDELGRDTNRNTLDGRARLAERARPLLAQLPDGAFA 403 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + Q+ PS+R+ + + + Sbjct: 404 DLMRQEL-------------QRQTGVGAAAPATAPEPQRAPSRRVGAPAQKRSLV----- 445 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 +++ L+ P++ + + L L ++ + + Sbjct: 446 ---RSMIALLLQQPSLGLQLQPPYPFAELRLPGM-PLLLELLDVVHQRPEISTGALLEHF 501 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + GE L++L Q + Q A + L ++ +E++++ Sbjct: 502 ADHEQGEALRKLAAQSLPGD----------ENSWAHELQDAAAQLEKQTLQQRIDELQQK 551 Query: 602 IAQVTAKGEAEKTAILISILHEV 624 + E +K L +L + Sbjct: 552 -QRSQGLDETDKY-ELRMLLQAL 572 >gi|226360349|ref|YP_002778127.1| DNA primase [Rhodococcus opacus B4] gi|226238834|dbj|BAH49182.1| DNA primase [Rhodococcus opacus B4] Length = 644 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 134/651 (20%), Positives = 239/651 (36%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + I +++G+YV R CPFHDEK+PSFH + G Sbjct: 4 RIPDRDVAAIRERTRIEDIVGEYVSLKRAG----GDSMKGLCPFHDEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD SFL + SF+E+V++LA + + + L+ Sbjct: 60 FHCFGCGEGGDVYSFLQKIDHISFVEAVEQLADRLNYTISYEGGGTSVQRDRGTRARLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L+ + YL ER D+ A + F GYAPD L +HL KGF Sbjct: 120 ANAAAQEFYSARLQEPDAQAARDYLTERNFDAAAAQQFGCGYAPDGWDVLTKHLLGKGFD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIR+ G VI FG R L +++ KY+N+P Sbjct: 180 VKELEAAGLSK--AGRRGHIDRFHRRLLWPIRNLSGDVIGFGARKLFDDDTMPGKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K + L+ A + K ++VEGY DV+++ AGV+ V++ Sbjct: 238 ETMLYKKSQVLFGLDLAKREIAK----------GHQAVVVEGYTDVMAMHLAGVKTAVAA 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----NFVLL 353 GTA E L +L +L + ++ + Sbjct: 288 CGTAFGEDHLSMLRRLLMDDSYFRGEIIYTFDGDAAGQAAAMKAFEGDQKMAGQTFVAVA 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP + G A L+ P+ + + K T + R E + Sbjct: 348 PEGMDPCELRQKSGDAAVRDLVARRTPMFEFVVKSILTEHDLETAEGRVEALRRTVPVVA 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---- 469 IK+ LR Y+ + + + + + + R P ++ + Sbjct: 408 QIKEATLRDSYAVQLSGWVGWDDIAAVRQRVRDEARKRASTRGSVSAPPKKKAARGDNKD 467 Query: 470 ------SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 L + + + + L + +PAI + L + + + + Sbjct: 468 APQLPVGLSRPRPNDPTLWAQREALKGALQYPAIAGTVFDSLPVETFTHPTYVVIRESMI 527 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + L ++ L D Y + Sbjct: 528 AAGGASAGLGGGEWVDAVGRGVEDVTAASLVSELAVEPLP------AEEDTVPRYISGVI 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + Q E++ ++ +++ +++ L+ L + + Q Sbjct: 582 ARLQEVWVGEQVAELKSKLQRISPATASDEFHSLLGDLVALEQYRRSLLDQ 632 >gi|225412270|ref|ZP_03761459.1| hypothetical protein CLOSTASPAR_05492 [Clostridium asparagiforme DSM 15981] gi|225042188|gb|EEG52434.1| hypothetical protein CLOSTASPAR_05492 [Clostridium asparagiforme DSM 15981] Length = 640 Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats. Identities = 148/663 (22%), Positives = 267/663 (40%), Gaps = 76/663 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ + I ++I YV ++ Y+ CPFH+EK+PSF + K Sbjct: 1 MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGA-----SYFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ ++FL +F E++Q LA AGV LP + ++ + L+ Sbjct: 56 MYYCFGCGAGGNVITFLMEYENYTFPEALQSLADRAGVNLPKMEYSKEAREQADFKARLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++A ++F++ LK + + + Y D+RG+ I F LGYA + L +L++KG Sbjct: 116 EANKLAANYFYYQLKQPQGQLGYQYLHDKRGLKDETIRHFGLGYANKTSDDLYRYLKEKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + + + E GL+ + D+F NR++FPI +VI FGGR + KYLNSP Sbjct: 176 YEDSFLKETGLVTVEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K +NLY A + F ++ EGY+DV+SL QAG N V+S Sbjct: 233 ETKLFDKSRNLYGLNYAR------------TSREKFFLICEGYLDVISLHQAGFTNAVAS 280 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T +L + + +++L +D D G++AA +AI + G + + + + Sbjct: 281 LGTAFTTQHANVLKRYTDQVILTYDSDGAGVKAALRAIPI---LKEVGMSIKVLNMRPYK 337 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AF + I E+ ++ P+++ + + + + Sbjct: 338 DPDEFIKNMGAEAFRERIGEARNSFMFEVDVLKKDYQLEDPEQKTKFYLETAKMLLRFGE 397 Query: 418 QKLRYYYSQAIR-------DRLQQLFQKYI------------------------------ 440 R Y QA+ + L+QL + Sbjct: 398 PLERDNYIQAVSREHMIPYEELRQLVNRLGMTMGLKAGESYSKQAAGRINRQAGAYSERG 457 Query: 441 -TEHSGYGRYWKKNARHRDQKGPSQR--------LMQSSLVKGKLSKKPSLREAALLLTL 491 G + ++ GP + + LL L Sbjct: 458 EAASRGQSAGNAQGGYAQESGGPPDSREGYGARGPGAKREKRPAKEDGIRKSQRLLLTWL 517 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 I +P + + + + + ++ +F + + + + + + Sbjct: 518 IENPELFDKIDGIITADDFVEDLYHQVADEVFRGHAAGTLNPAAILSRYINDEDQYKEVA 577 Query: 552 QLDRQVRDAGLWSATTEANIVD----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L L + + + VR+ + + ++ + + Q+ Sbjct: 578 ALFNASLSDSLSNEEQKKAFSETVYKVRKNSLDTASKNAKDIAGLQEIIRQQAALKQLRI 637 Query: 608 KGE 610 + Sbjct: 638 TLD 640 >gi|307246389|ref|ZP_07528465.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255375|ref|ZP_07537185.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259825|ref|ZP_07541543.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306852722|gb|EFM84951.1| DNA primase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306861684|gb|EFM93668.1| DNA primase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866123|gb|EFM97993.1| DNA primase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 580 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 176/618 (28%), Positives = 283/618 (45%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + R + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A + + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502 Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ ELL + V + + E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 LS +K+E+ I Q Sbjct: 563 SLGLSAEEKQELVMLIVQ 580 >gi|290474859|ref|YP_003467739.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004] gi|289174172|emb|CBJ80959.1| DNA biosynthesis; DNA primase [Xenorhabdus bovienii SS-2004] Length = 582 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 164/598 (27%), Positives = 273/598 (45%), Gaps = 41/598 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N ACCPFH+EKTPSF N K F Sbjct: 4 RIPRAFINDLLARTDIIDLIDIRVPLKKKGKNHQ-----ACCPFHNEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LAA+ G+ +P + + +L + Sbjct: 59 YHCFGCSAHGNAIDFLMNYDRLDFVESIEELAAMHGLEVPYEANSGGGHIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ HSL + YL RG+ I F +G+AP ++ + Sbjct: 119 LMDTINSFYQHSLTTPNGQSAQQYLLRRGLSEEIIHRFAIGFAPTGWDNVLKQFAHNAEE 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ +AG+L+ +++ +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RKQLNDAGMLV-TNDNGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A R +++VEGYMDV++L Q G+ V+SLG Sbjct: 237 EIFHKGRQLYGLYEAQQNHNSLSR----------LLVVEGYMDVVALAQFGIDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + +V C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHVQLLFRTTDNVVCCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS IR G+ FE+ + ++L L L++ +TP+ ++ I+ + + Sbjct: 347 DSLIRKEGREVFEQRMEKALTLSTFLFESLLPQVDLSTPEGTTKISSLAMPLISQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + + L + + + P+ Sbjct: 407 LRLYLLQELGNLLGTPDTTQLERFLAKLVKKDTSTYQALKLKPTTM-------------- 452 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+ L + Q ++ + Sbjct: 453 -----RILIALLVQNPHLATLVPSLQGLFSVQIAGL-PLFIELVDTCLAQPGLTTGQLLE 506 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + + L++L + E D + + L+++++ E Sbjct: 507 QYRDNKYAKQLEKLAAW--NDIQVDEIAEKTFSDALNHLFASALDERFSFLIAKERTE 562 >gi|194290319|ref|YP_002006226.1| DNA primase [Cupriavidus taiwanensis LMG 19424] gi|193224154|emb|CAQ70163.1| DNA PRIMASE [Cupriavidus taiwanensis LMG 19424] Length = 603 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 170/642 (26%), Positives = 277/642 (43%), Gaps = 57/642 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117 +CF C G + FL G S+ E+V+ LA G+ +P + +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGQSYPEAVRELAQSVGMTVPEERDRLPPGQRAEQQARSVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + ATDF+ L+ + YL RG+ F LGYAPD L Sbjct: 117 SDAMTRATDFYRRQLRG--APQAIQYLKGRGLTGEIAGQFGLGYAPDDWQGLETVFGSYR 174 Query: 178 FSEEKI-------IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + D D YDRFR+R++FPIR+++G VI FGGR + +GE Sbjct: 175 DDNVAAPLVEAGLLIESDKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVMGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A + ++ + ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H+ + F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDS++R G+ AF + ++PL L + TE P+ RA + K Sbjct: 344 LFLPAEHDPDSYVREEGREAFAAQVRNAMPLSRFLLQSVTEELDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + LR + + D I G + R + ++R + Sbjct: 404 LLQAMPAGGLRLQIVRELADATG-TTPAEIEAICGLRSDPARVGRFAQPRPRARRQAPTG 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVE 528 L E ++ L+ +PA+ ++ + D + + L + + Sbjct: 463 L------------EQRVIQLLMCYPALSARLDEDARALLLDGEGGDSEVLAHLVSACDGV 510 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q + L + + E+ V + A + + LA Sbjct: 511 QGEVNFAAFSEHLAQSPYAEVYAAARTAVLREEIEEAP---ATQEFDAAITKLLA----- 562 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + ++ ++ TA E + L E+H + Sbjct: 563 EPLRRELDSLQAEVIAGTA---DEAAKQRMRWLVGEIHRRRQ 601 >gi|261868196|ref|YP_003256118.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413528|gb|ACX82899.1| DNA primase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 585 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 292/628 (46%), Gaps = 54/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI D+L I I +LI V + DY ACCPFH EKTPSF +D K F Sbjct: 4 SIPRTFIDDILTKINIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115 Y+CF C G+ +SFL F+E+V+ LA G+ +P D + + + Sbjct: 59 YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDGGKQVNFQTKR 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L++ F+ L + YL +RG+ + IE F++GY P++ S+ + Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEVIERFQIGYVPNAMDSVYRQFGK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++K+ + G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLN Sbjct: 177 NREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET+ +HKG LY + AL +S +++VEGYMDV++L Q GV V Sbjct: 235 SPETVTYHKGSELYGLYEALQA----------DDSPQKLLVVEGYMDVVALAQFGVNYAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGT+ T Q++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+FIR YGK FE+ + + L + L+ T F++ + +A+L I I Sbjct: 345 GEDPDTFIRQYGKQGFEEYLDNAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR + +L L + + P+ + ++ + Sbjct: 405 PGDVLRLDLRNTLAKKLGILDPAQLESML------PNQVKAEGPVAPTMQFKRTPM---- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L+ L+ +P ++ + +L +R N L + L + E+ Sbjct: 455 ---------RILIALLLQNPELV-KFVPDLEPLRNLNEPGYDLLAELTALCREKVGISSG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + L++L + I D + + L + ++ Sbjct: 505 QLLEYWRDTTQQSTLEKLLAWN------HLIEDDKIEDTFRETLRYFYLQLVDKRINWLI 558 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623 K A+ E ++ + L+ E Sbjct: 559 A---KDRAEGLDLNEKKELSHLLVKKQE 583 >gi|255525305|ref|ZP_05392245.1| DNA primase [Clostridium carboxidivorans P7] gi|296188173|ref|ZP_06856565.1| DNA primase [Clostridium carboxidivorans P7] gi|255510977|gb|EET87277.1| DNA primase [Clostridium carboxidivorans P7] gi|296047299|gb|EFG86741.1| DNA primase [Clostridium carboxidivorans P7] Length = 587 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 177/629 (28%), Positives = 275/629 (43%), Gaps = 43/629 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I+ + I ++I + V R N Y CPFH EKTPSF + K Y Sbjct: 2 ISEDVIQRVKEENDIVDVISETVKLKRAGRN-----YSGLCPFHHEKTPSFSVSIDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F+ SF E+V+ LA + + + + K L +L Sbjct: 57 KCFGCGEAGNVITFVMKTKNLSFPEAVRLLANRVNITIETDENNVHK--DTFKQLYKLNV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + +F + L + + YL RGI I F LGY+ +S L HL++KGF+E Sbjct: 115 DSARYFFNCLGENANAKQ--YLLNRGITEKTIRSFGLGYSANSWDGLLRHLKKKGFTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ GL+I + YDRFRNR+IFP+ RG+VI FGGR + KYLNSPET LF Sbjct: 173 MLSNGLIIKSQKG-SYYDRFRNRIIFPVFDYRGRVIGFGGRVM-DDSKPKYLNSPETTLF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD +SL Q G+ N V+SLGTAL Sbjct: 231 KKGVNLYGLNFAIKNNR-----------ERMLIIVEGYMDCISLHQYGITNAVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ K + ++ +D D G A + +++ G V + + G+DPD + Sbjct: 280 TTNQAKLIKKYADSAIIAYDADSAGQMATMRGLEI---LKKVGLDVKVLKVPEGKDPDEY 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR GK AF KLI E+LPLVD K+ EN FN + + I+ + D R Sbjct: 337 IRNNGKEAFIKLIEEALPLVDYRIKKIKENIDFNNSEGVIKYAEQALEIISDL-DAIERE 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + K K + + K L Sbjct: 396 IYIKKLSEETGIRDQALYDMINTKIQKNVK-------KSENMNIDNDFGQKLYLEPAYLK 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E LL + L+ + + +K++ ++ E + EE +R+ Sbjct: 449 AERGLLKAIFKDEKALEYVEKSIKREELILESHRKIYDYIV----ENMQYDEEERRKRIE 504 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + +D + A + D + K+F+ L K++I +I Sbjct: 505 VKC-----DDIDTSKEWVNIIEADFIYDSSDYENIVDDYIRGIKKFK-LEESKKQIMNRI 558 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631 Q G+ E++ L L ++ +I + Sbjct: 559 KQYEIDGKLEESLKLAQELIQIQKKIGGM 587 >gi|293391710|ref|ZP_06636044.1| DNA primase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952244|gb|EFE02363.1| DNA primase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 585 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 176/634 (27%), Positives = 297/634 (46%), Gaps = 59/634 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI D+L + I +LI V + DY ACCPFH EKTPSF +D K F Sbjct: 4 SIPRTFIDDILTKVNIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115 Y+CF C G+ +SFL F+E+V+ LA G+ +P D + + + Sbjct: 59 YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDGGKQVNFQTKR 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L++ F+ L + YL +RG+ + IE F++GY P++ S+ + Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEVIERFQIGYVPNAMDSVYRQFGK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++K+ + G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLN Sbjct: 177 NREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET+ +HKG LY + AL +S +++VEGYMD ++L Q GV V Sbjct: 235 SPETVTYHKGSELYGLYEALQA----------DDSPQKLLVVEGYMDAVALAQFGVNYAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGT+ T Q++LL++ + ++V C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+FIR YGK FE+ + + L + L+ T F++ + +A+L I I Sbjct: 345 GEDPDTFIRQYGKQGFEEYLDNAQSLSEFLFAHLTPQVDFSSKEGKAKLAALAIPLIKQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR + +L L + + P+ + ++ + Sbjct: 405 PGDVLRLDLRNTLAKKLGILDPAQLESML------PNQVKAEGPVAPTIQFKRTPM---- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L+ L+ +P ++ + +L +R N L + L + E+ Sbjct: 455 ---------RILIALLLQNPELV-KFVPDLEPLRNLNEPGYDLLAELTALCREKVGISSG 504 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + L++L + +++ L Y +L+ ++ Sbjct: 505 QLLEYWRDTTQQSTLEKLLAWNHLI---------EDDKIEDTFRETLR-YFYLQLVDKRI 554 Query: 596 EEIEKQIAQVTAKG-EAEKTAILISILHEVHIQI 628 + IA+ A+G + + L +L + + Sbjct: 555 NWL---IAKDRAEGLDLNEKKELSHLLVKKQEKR 585 >gi|160892999|ref|ZP_02073787.1| hypothetical protein CLOL250_00536 [Clostridium sp. L2-50] gi|156865082|gb|EDO58513.1| hypothetical protein CLOL250_00536 [Clostridium sp. L2-50] Length = 589 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 157/631 (24%), Positives = 270/631 (42%), Gaps = 45/631 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I +++ I N+I YV ++ + ACCPFH EKTPSF + K Sbjct: 1 MYYSDEVIDEVISRNDIVNVISGYVSLRKKGR-----TFEACCPFHHEKTPSFKVDRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118 Y+CF C G+ +F+ SF E+VQ LA AG+ LP + +EK + L Sbjct: 56 LYHCFGCGAGGNVFTFIMEYENMSFPEAVQYLADKAGMTLPESSQSGQDASREKYKILLR 115 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + A +FH+ ++ K+ + Y RG+ I+ F LGYA R L +L+ KG Sbjct: 116 DMNKTAAAYFHYIMRHTEHGKKAYEYFKGRGLSDETIDRFGLGYADVYRDDLYRYLKGKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +S+ ++ ++GL++ + + S D+F NR + PI G+VI FGGR + KY+N+ Sbjct: 176 YSDSELKDSGLVVIDEKNGGS-DKFWNRAMIPILDINGKVIGFGGRVM-GDGKPKYINTS 233 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T++F K +NL+ A +K I EGYMDV+S+ QAG N V+S Sbjct: 234 DTVVFDKSRNLFAMNIARRSRRKG------------FICCEGYMDVISMHQAGFDNAVAS 281 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T +L + + + L +D D G+ A K I ++ G + + + Sbjct: 282 LGTAFTFGHANILKRYTNEVYLAYDSDGAGVAATLKVISIMR---EVGISARVINMRPHK 338 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AFE+ I ++ + + +E + N P+ER + I++ Sbjct: 339 DPDEFIQTLGSEAFEERIQKAESAIMFEVRMLSEQYNLNDPEERTSFHNETAKRLAQIEE 398 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y +A+ + YG +++ + K Sbjct: 399 VLERNNYIEAVSNLYHIDKTGLTDLVHKYGIAGVPRLEIVEREERRAEHESRAADPAKNK 458 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 LL ++N P + Q+ + + +++ + + LFS + E P I Sbjct: 459 PM-----KLLLTWMVNEPGLFQKLDGIIDETSFEDGVYRVVADKLFSQYRENGKVEPASI 513 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L+ ++ + + + DV + + Sbjct: 514 VTTFESIEEQRLVAEMLQTNIGIDMTQEEINNAVTDVVKKI---------------RLSS 558 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 IE ++A+ E + + L ++HI + Sbjct: 559 IEDKLAKTNDIKEMQNLIRAKADLTKLHISL 589 >gi|89094382|ref|ZP_01167322.1| DNA primase [Oceanospirillum sp. MED92] gi|89081274|gb|EAR60506.1| DNA primase [Oceanospirillum sp. MED92] Length = 656 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 181/683 (26%), Positives = 287/683 (42%), Gaps = 81/683 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ FI DLL I I +++ V R N Y CPFH EKTPSF N K Sbjct: 4 RIPQHFIDDLLARINIIDVLDGRVQKLKRTGKN-----YSGLCPFHKEKTPSFTANQEKQ 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIR 119 FYYCF C G+ L FL +F E+V+ LA AG+ +P D +++ ++ + L Sbjct: 59 FYYCFGCGAGGNALGFLMDYENLNFPEAVEELAKTAGMEVPRDDSPQQREHDLRLSKLYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L++ A+ ++ L++ + + + RG+ A + F +G+AP ++ HL + Sbjct: 119 LLKAASSYYEDQLRSHQTRESAVNYLKSRGLSGQAAKAFSIGFAPSGWDNILNHLGKSEE 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + E+GLLI + + YDRFRNR++FPIR RG+VI FGGR L + KYLNSPE Sbjct: 179 EIQLLEESGLLIHNEERDSRYDRFRNRIMFPIRDQRGRVIGFGGRVL-GDDKPKYLNSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T FHK + LY + A + QK R +I+VEGYMDV+ L Q + V++L Sbjct: 238 TPTFHKSRELYGLYEARKHNQKLER----------LIIVEGYMDVVGLAQFDIHYAVATL 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T L L+K+ P ++ CFDGD+ G AA +A+ L + G F+ L GED Sbjct: 288 GTATTSQHLERLFKIVPEVIFCFDGDNAGREAAMRALKTTLPVIEDGKEARFLFLPDGED 347 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK FE I + PL + +K +E ++ D RA + IN +K Sbjct: 348 PDSLVRQEGKENFENRISTAQPLSEFFFKCHSEGADLDSMDGRARFSTEVLPAINSMKTS 407 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------- 459 L+ I + ++ T + + + Sbjct: 408 LLQQMMLDKICELTHLSLEQIQTAINFRESVQEPAQAQNNNPVQHYSENEYDYSGYDYSP 467 Query: 460 ---------------------KGPSQRLMQSSLVKGKLSKKPSLRE----AALLLTLINH 494 P + Q P E L+ L++ Sbjct: 468 EEREYQPGYEDAYNFSGDDYAPKPKKNYKQRDGKPRSFQPPPRNTELSFAQKLVSLLLHF 527 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-CERGFGELLKQL 553 P + E + N+ K+ S L + ++ + E + QL Sbjct: 528 PKLASEY-RLPEGTELINDSNIKILSQLVDYYSRNPDSSLGQLVVDWREDAALSETIVQL 586 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + S R AL + + + ++K+ + +AE+ Sbjct: 587 YEISSSLEIKSEAEG------RVYLNDALKELE-LKAIEADVSSLQKK-----HELKAEE 634 Query: 614 TAILISILHEVHIQIHQIESQEA 636 L+ ++++++S A Sbjct: 635 KQRLLQHF----KRLNELKSSYA 653 >gi|254669784|emb|CBA04067.1| DNA primase [Neisseria meningitidis alpha153] gi|325134648|gb|EGC57288.1| DNA primase [Neisseria meningitidis M13399] gi|325138536|gb|EGC61099.1| DNA primase [Neisseria meningitidis ES14902] Length = 590 Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|307257543|ref|ZP_07539307.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306863979|gb|EFM95898.1| DNA primase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 580 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 176/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPSSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ + I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + R + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A + + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502 Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ ELL + V + + E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 563 SLGLSAEEKQELVMLIAQ 580 >gi|117928014|ref|YP_872565.1| DNA primase [Acidothermus cellulolyticus 11B] gi|117648477|gb|ABK52579.1| DNA primase [Acidothermus cellulolyticus 11B] Length = 655 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 152/669 (22%), Positives = 258/669 (38%), Gaps = 68/669 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + PI++++ +YV NA G CPFHDE+TPSFH ++G Sbjct: 4 RIRDADIARVRELSPIADVVAEYVTL----RNAGGGSLKGLCPFHDERTPSFHVTPARGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA G L + + L+ Sbjct: 60 WHCFGCGEGGDVITFVEKIEHLSFFEAVERLAARVGYELHYEQGPASLRGSGGQRQRLLA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF L + +L +RG D I + LG++P L HLR++GFS Sbjct: 120 ANTAAAAFFAAQL--SDAPAARRFLTDRGFDDATISRYGLGFSPARWDELVRHLRREGFS 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 ++ ++ AGL I G+ DRFR RL++PIR G ++ FG R L + KYLN+PE Sbjct: 178 DDDLVTAGLAIRGNR--GLVDRFRGRLMWPIRDITGDIVGFGARKLDPADDGPKYLNTPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K LY A + + ++VEGY DV++ AGV V++ Sbjct: 236 TPLFKKSSVLYGIDLAKKDIARI----------RQAVIVEGYTDVMACHLAGVTTAVATC 285 Query: 299 GTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA E +R+L + ++ FD D G +AA +A + + Sbjct: 286 GTAFGEEHVRVLRRLLLDTSEFGGEVIFTFDADAAGRKAAMRAFESDQKFVA---HTFIA 342 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A +I PL + + + + + P+ R Sbjct: 343 VAPDGMDPCDLRLARGDAAVRDMIARRQPLFEFAIRSLLRDFNLDLPEGRVAALERTIPL 402 Query: 412 INHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + IKD LR Y++ + + + ++ E G R + A R Sbjct: 403 VARIKDVSLRDEYARRLAGWVGVGDELAVVRRVRREAGGSARGPRPGAPGLRGAAADPRG 462 Query: 467 MQSSLVKGKLSKK--------------------------PSLREAALLLTLINHPAILQE 500 S + E L + PA+L Sbjct: 463 TASGPRGTASGPRGTASGPRPPEAGPAADPAAAPDPRDPALQVEREALKLALQRPALLGP 522 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + L + + ++ + + + + + +++L R++ Sbjct: 523 AFDALDAAAFRSPAYAEVRDAIEKAGGTATTAGGDGWVAAVLDAAPDDRVRRLVRELLVE 582 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + A + Y A R RLL R+ E++ ++ ++ + + L + Sbjct: 583 PPFVA------GEPDVRYAAAQVARLRVRLLDREIAELKSRLQRINPVEQPTEHTRLFAE 636 Query: 621 LHEVHIQIH 629 L ++ + Sbjct: 637 LVQLEKRRR 645 >gi|297544973|ref|YP_003677275.1| DNA primase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842748|gb|ADH61264.1| DNA primase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 601 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 156/635 (24%), Positives = 293/635 (46%), Gaps = 43/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSREMIERVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118 Y+CF C+ G+ ++F+ + +F ++++ LA G+ L V+ ++ +K + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKDAIEFLADRVGITLEEVELTEKEYQKKKLIGEIC 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++A +F++ L + ++ Y+ +RG+ I+ F +GY+P L L++KG+ Sbjct: 116 KVNKLAAVYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPEGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR + KYLN+PE Sbjct: 176 TESFLLKAGLLSQ--KNNRYYDRFRNRVMFPIIDLKGNVIGFGGRAI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q +L+ + +++ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTEDQAKLIKRYKRNVIIAYDADEAGVSAAIRGLDI---LDELNLNIKVLTIPEGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I ++ D+ Sbjct: 338 PDEFIKKEGVEAFNQLIENAESLIEFKAKVYRKNLDLDNPQDRIVYVKKIAKDIANLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y ++ Q TE S + + + + R S K Sbjct: 398 VKREVYISSVAKVAQIPENAVRTEVSRFVNRKIRKNQKNMYMAGNIRHNIYSSNKISP-- 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ ++ + + + + +N +L+ ++ + S + +I Sbjct: 456 -----EKYLIALILYDNDLYKRIKETITPDMLENVKLRPVFEEIMSRLEVGEKVQINDIV 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + ++ ++ + + L+ ++E I Sbjct: 511 YLLQEENLISEFNDIIKAFYES-----------ENITEQAADDIINKILINSLAVKRENI 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ I + G+ EK L+ L ++ +I++ Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594 >gi|24372866|ref|NP_716908.1| DNA primase [Shewanella oneidensis MR-1] gi|24346978|gb|AAN54353.1|AE015572_8 DNA primase [Shewanella oneidensis MR-1] Length = 574 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 174/620 (28%), Positives = 286/620 (46%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P ++++ + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ FF L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK FE+L+ ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDPFEQLMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ K KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFTVKQPKPTASTGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L + ++ Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLALTREHRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + + + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVAEENQLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + LI Sbjct: 550 --SLKQTHTKEEKIQLQKLI 567 >gi|255066478|ref|ZP_05318333.1| DNA primase [Neisseria sicca ATCC 29256] gi|255049358|gb|EET44822.1| DNA primase [Neisseria sicca ATCC 29256] Length = 590 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 183/629 (29%), Positives = 297/629 (47%), Gaps = 48/629 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMAVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LG APD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGSAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++ + R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKDAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ +++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYVALDGDFACLANLAETIKSHAAVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + Q+ + + E + + + G ++ L K +Q Sbjct: 507 QVLEYMRGSPYEETVNQIFQSTLYSEEMEGGGEEDRENFQIGMKKLLNELK-----YQQI 561 Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623 E ++++ + + E + L++ Sbjct: 562 ETLKQKSLQSGLNENEKKLLLSLLTAKQN 590 >gi|227529170|ref|ZP_03959219.1| DNA primase [Lactobacillus vaginalis ATCC 49540] gi|227350895|gb|EEJ41186.1| DNA primase [Lactobacillus vaginalis ATCC 49540] Length = 616 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 164/642 (25%), Positives = 276/642 (42%), Gaps = 51/642 (7%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 IS++IG YV + + CPFH+E+TPSF N+ K F+YCF C G+ Sbjct: 2 DISDVIGHYVQLHQSGKG-----FVGLCPFHEEQTPSFSVNEQKQFFYCFGCGRGGNVFQ 56 Query: 76 FLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTDLIRLIEVATDFFH 129 FL L F E+V +A +A V LP ++ L+ + E A +H Sbjct: 57 FLMELKHIPFTEAVAEVAQLANVDLPSQYLNNGDRSIHQENNTPNGKLMVMHEEAAKLYH 116 Query: 130 HSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L N + YL RG+ I F LG+AP+ R L+ L QK + + ++GL Sbjct: 117 HILMNTPAGAQALKYLKGRGMTDELINDFNLGFAPEQR-ILKPFLEQKINDYQLLRKSGL 175 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPETILFHKGK 246 ++ +N +DRF +R++FP+R+ G+VI F GR + ++ KYLNSPET +F+K + Sbjct: 176 FVEDNNG-GLHDRFVDRVMFPLRNQNGRVIGFSGRVIGKVPADTPKYLNSPETPIFNKRR 234 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 L+NF A + +S I L EG+MDV+S AG +N V+S+GT+LTE Q Sbjct: 235 TLFNFDIARKEAR----------GTSKIYLFEGFMDVISAYSAGAKNGVASMGTSLTEEQ 284 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 + +L + ++ +C+DGD G A +A+ L H G ++ V L G DPD +++ Sbjct: 285 VGILGRAVRQVDICYDGDSAGQNAIDRAVTLFRDHQPQGMQLRVVQLPAGIDPDEYVQQN 344 Query: 367 GKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G F K L+ + VD + N++ N E + + + Y Sbjct: 345 GADKFAKYLVDQEETPVDFYLRFYRLNKNLNNQTELISYLEQSLKLLATLSSSLEQDMYL 404 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------LMQSSLVK 473 + ++ R RH Q S ++ Sbjct: 405 TQLAKEFDLDKATLKSQLQDISRRLGGRKRHSQPASLPQNEGSSSGFSVGPGPASSPALQ 464 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ L E LL + + + + D + + Q L+ S F E + Sbjct: 465 RNPIKRTELAEQLLLRYMFHDQEVWDHVA-AINDFHFAHERYQTLYLLAESYFSEHGEYS 523 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L E L Q+++ D + + + L + LS+ Sbjct: 524 AAGLMDYLKEDSLRSTLGQIEQLNVDDVVNMQLID-----------DCVQLIQEQIPLSQ 572 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + +E++ QI + ++ +E L L ++ + +++++E Sbjct: 573 KIKELQSQIREASSLNNSELATQLTMKLIKLLKKQQELKAEE 614 >gi|15894581|ref|NP_347930.1| DNA primase [Clostridium acetobutylicum ATCC 824] gi|464463|sp|P33655|PRIM_CLOAB RecName: Full=DNA primase gi|15024229|gb|AAK79270.1|AE007642_2 DNA primase, DNAG [Clostridium acetobutylicum ATCC 824] gi|580959|emb|CAA80624.1| primase [Clostridium acetobutylicum ATCC 824] gi|325508713|gb|ADZ20349.1| DNA primase [Clostridium acetobutylicum EA 2018] Length = 596 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 169/630 (26%), Positives = 281/630 (44%), Gaps = 40/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I+ + I +++ + V R N Y CPFH EKTPSF + K Y Sbjct: 6 IAEDIIQKVKDLNDIVDIVSEKVKLKRTGRN-----YSGLCPFHHEKTPSFSVSQDKQIY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLI 121 CF C G+ ++F+ SF+E+V+ LA + + D K ++ L + Sbjct: 61 KCFGCGEAGNVITFVMKTKNFSFVEAVKYLADKVNITIDDNKDKYYAKNKEKYDKLYSMN 120 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A +F +L + + Y +RGI+ + F LGYA D L ++ KG++E Sbjct: 121 VEAARYFFRNLDSN--SKAKKYFLDRGINQKTMRRFGLGYAKDDWRQLLSFMKSKGYTEL 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++IEAGL++ + + YDRFRNR+IFP+ +G+VI FGGR L KYLNSPET + Sbjct: 179 ELIEAGLIVQKNKAV--YDRFRNRVIFPVFDYKGKVIGFGGRVL-DDSKPKYLNSPETKI 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG NLY A+ N II+VEGYMD +SL Q G+ NVV+SLGTA Sbjct: 236 FKKGTNLYGLNFAVK-----------NNIGDTIIIVEGYMDCISLHQYGINNVVASLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ Q +LL + + ++V+ +D D G A + D+ G + + + G+DPD Sbjct: 285 LTKDQAKLLKRYASKVVISYDADTAGQAATLRGFDI---LREAGFDIKIIKIPDGKDPDE 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R GK AF +L+ ++ ++D R EN + + + + I + D + Sbjct: 342 FVRKNGKEAFMRLVENAVSIIDYRINRAFENVNLKDSESVIKYVKDISEIIEEL-DPVEK 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + I D+ Q S + N ++ + + K Sbjct: 401 DVYIKKISDKTGIREQAIYDLISTDIQKSGNNIEKMNKNSNYGQNLYVESAHVKS----- 455 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E LL +I H I +++ +K+++ + + F + + + Sbjct: 456 --ERYLLRLMIEHKDIRSYIESKISADDLIMESHKKIYNIILN-FEDNLSSDLKSKFGFI 512 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 R ++ + + + +V+ + K+FR L K++I + Sbjct: 513 ESRCDDGESSSEIVKIEEQNIM-----LSENNVKDLVDDFITNIKKFR-LEESKKKIMSE 566 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I + KG ++T LI + E+ Q+ + Sbjct: 567 IKGLEEKGLFDETIELIKRMEEIQNQLDNL 596 >gi|190150751|ref|YP_001969276.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307264153|ref|ZP_07545747.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915882|gb|ACE62134.1| DNA primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306870527|gb|EFN02277.1| DNA primase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 580 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 176/618 (28%), Positives = 285/618 (46%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ + I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + + + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A + + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502 Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ ELL + V + + E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 563 SLGLSAEEKQELVMLIAQ 580 >gi|303252482|ref|ZP_07338646.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248517|ref|ZP_07530535.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648683|gb|EFL78875.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854993|gb|EFM87178.1| DNA primase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 580 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 177/618 (28%), Positives = 285/618 (46%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ + I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRTQGKQGFEAYLQNTMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + R + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A + + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502 Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ ELL + V + + E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 563 SLGLSAEEKQELVMLIAQ 580 >gi|289578735|ref|YP_003477362.1| DNA primase [Thermoanaerobacter italicus Ab9] gi|289528448|gb|ADD02800.1| DNA primase [Thermoanaerobacter italicus Ab9] Length = 601 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 294/635 (46%), Gaps = 43/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSREMIERVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L V+ ++ +K + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEEVELTEKEYQKKKLIGEIC 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++A +F++ L + ++ Y+ +RG+ I+ F +GY+P L L++KG+ Sbjct: 116 KVNKLAAVYFYNKLFSEEGRQALAYIRKRGLTEATIKKFGIGYSPPEGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR + KYLN+PE Sbjct: 176 TESFLLKAGLLSQ--KNNRYYDRFRNRVMFPIIDLKGNVIGFGGRAI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q +L+ + +++ +D D+ G+ AA + +D+ + + + +G+D Sbjct: 281 GTALTEDQAKLIKRYKRNVIIAYDADEAGVSAAIRGLDI---LDELNLNIKVLTIPQGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I ++ D+ Sbjct: 338 PDEFIKKEGVEAFNQLIENAESLIEFKAKVYRKNLDLDNPQDRIVYVKKIAKDIANLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y ++ Q TE S + + + + R S K Sbjct: 398 VKREVYISSVAKVAQIPENAVRTEVSRFVNRKIRKNQKNMYMAGNIRHNIYSSNKISP-- 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ ++ + + + + +N +L+ ++ + S + +I Sbjct: 456 -----EKYLIALIMYDNDLYKRIKETITPDMLENVKLRPVFEEIMSRLEVGEKVQINDIV 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + ++ ++ + + L+ ++E I Sbjct: 511 YLLQEENLISEFNDIIKAFYES-----------ENITEQAADDIINKILINSLAVKRENI 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ I + G+ EK L+ L ++ +I++ Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594 >gi|313496754|gb|ADR58120.1| DnaG_2 [Pseudomonas putida BIRD-1] Length = 558 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 155/448 (34%), Positives = 238/448 (53%), Gaps = 20/448 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DL+ + I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLINRLDIVDVVSSRVQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + + ++ + L L Sbjct: 60 YCFGCGAGGNALGFVMDHDNLDFPQAVEELARAAGMEVPREQGRRDQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A++F+ +L++ K YL RG+ F LG+AP +L +HL Sbjct: 120 LDAASEFYRQALRSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLLKHLGADTLQ 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +I+AGLLI+ S YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPET Sbjct: 180 QKVMIDAGLLIENAESGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + + + II+VEGYMDV++L Q G++N V++LG Sbjct: 239 PVFHKGQELYGLYEARKHNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA +E L+ L+++ P ++ CFDGD G +AA++A++ L +L G R F+ L GEDP Sbjct: 289 TATSEEHLKRLFRVVPSVLFCFDGDQAGRKAAWRALESTLSNLQDGRRARFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS +R G AF + S PL D +++ + + +A + I I Sbjct: 349 DSLVRAEGTDAFMARINQHSQPLADYFFEQLGVEADPRSLEGKAHMATLAAPLIEKIPGA 408 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGY 446 LR +++ Q+ Sbjct: 409 NLRQLMRNRLKEITGLDPQQVEQLAQQA 436 >gi|260438483|ref|ZP_05792299.1| DNA primase [Butyrivibrio crossotus DSM 2876] gi|292809072|gb|EFF68277.1| DNA primase [Butyrivibrio crossotus DSM 2876] Length = 583 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 147/634 (23%), Positives = 273/634 (43%), Gaps = 60/634 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P D ++++ I +++ + ++ + Y+ CPFH+EK+PSF + +K Sbjct: 1 MYIPDDLVEEIRSRNDIVDIVSSRIKLQKKGS-----SYFGLCPFHNEKSPSFSVSPNKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 +YCF C G+ SFL +F E+++ LA AG+ LP + + + ++ + Sbjct: 56 MFYCFGCGEGGNVFSFLMKYDNLTFSEALKELADRAGIELPDVRMSAEERNRSDLKNTVY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A ++H+ L+ Y ++R + + I+ F LG + L +++ KG+ Sbjct: 116 DINKEAARYYHYLLETETGNNARAYFNKRELSNDTIKSFGLGVSGIKSDDLYHYIKNKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ ++ E+GL I + ++DRFRNR++FPI ++ +VI FGGR + +G+ KYLNSPE Sbjct: 176 NDGQMKESGLFI--YDEKGAHDRFRNRVMFPIINTNNKVIGFGGRVMGEGQP-KYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F KG+NLY A N + + II+ EGYMDV+S+ QAG V+SL Sbjct: 233 TIVFDKGRNLYGLNAAKNSRK------------NNIIICEGYMDVISMHQAGFNQAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ Q L+ + +++C+D D PG +A+ +AI + G R + + +D Sbjct: 281 GTALTDGQANLIKRYVKDVLVCYDSDGPGTKASLRAIGI---FRNAGLRTKVINMEPCKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D FI+ YG AF+K I ++ + N N P + + + +++ Sbjct: 338 ADEFIKTYGADAFQKRIDDAENSFLYEVRILERNYDLNDPAGKTSFFNEVSVKLASFEEE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + Y + K K + Sbjct: 398 IERNNYIEAVASKYFVSADSLRKLVAKYAATVAGIKVNGIPKRE----------KREKEN 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL + + I ++ ++ + + + +F + F P I Sbjct: 448 GIDKSQRMLLTFIADDTGIYKKIADYISPEDFSEGIYRNVAEIMFENL-SNGTFNPGAIL 506 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + ++ +A+ D + AL + KR Sbjct: 507 NYFNGDDEHNEVARILNTNI------LEEDADNKDREKAVNDALLIIKR----------- 549 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + +T I L + + +++ Sbjct: 550 -------NSLEMKSRTTTDIMELQNIIKEQAKLK 576 >gi|52425816|ref|YP_088953.1| DNA primase [Mannheimia succiniciproducens MBEL55E] gi|52307868|gb|AAU38368.1| DnaG protein [Mannheimia succiniciproducens MBEL55E] Length = 588 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 186/628 (29%), Positives = 295/628 (46%), Gaps = 58/628 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI D+L I +++ V + TN +Y ACCPFH EKTPSF + +K FY Sbjct: 5 IPRSFINDILAKADIVDVVNSRVKLKKAGTN----NYQACCPFHHEKTPSFTVSKNKQFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQTD 116 +CF C G+ + FL F+E+V+ LA G+ +P +K EK + + Sbjct: 61 HCFGCGAHGNAIGFLMEYDKLEFLEAVEELANFLGLEVPREAGSDKKFEKSQPHYQNKRN 120 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+ +F+ L YL +RG+ IE F +G+ PDS ++ Sbjct: 121 LYELMHDIAEFYRQQL--PHSIPAQAYLQKRGLSEEVIERFAIGFVPDSFNAVLRRFGTT 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+ + G+L D YDRFRNR++FPIR RG+ IAFGGR L E KYLNS Sbjct: 179 KAEQQKLFDLGMLSRNDRGDI-YDRFRNRIMFPIRDRRGRTIAFGGRVL-TDERPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+ +HKG +Y + AL +S +++VEGYMDV++L Q GV V+ Sbjct: 237 PETLTYHKGNEIYGLYEALQI----------NDSPEMLLVVEGYMDVVALAQFGVNYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++L+++ S +IV C+DGD G AA++A++ L +L G ++ FV L G Sbjct: 287 SLGTATTAEQIQLIFRASEQIVCCYDGDRAGREAAWRALENALPYLQDGRQLKFVFLPDG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK AFE I ++L L D ++ E ++ + +++L I I Sbjct: 347 EDPDTYIRQYGKDAFEDYIQKALSLSDFMFTHLIEQVDLSSKEGKSKLAALAVPLIKRIP 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 Q LR Y + +L + Q + + A + + Sbjct: 407 GQMLRLYLRNILAQKLGIIDQTQLESLIPSKIEQPEAAIEKSPAVKRTPM---------- 456 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ +P + Q Y L ++ N +L+ L + + Sbjct: 457 --------RLLIGLLLQNPQLAQLDYD-LEPLKSLNEPGFELFYALTKLCRDNMGITMGQ 507 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQK 595 I + + + + L+ L +W +++ + + L LY RF Sbjct: 508 ILEYWRDSQYSKPLEILA-------IWDHL--VTDDKIQETFLETLLYLYVRFTD----- 553 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623 + IE+ IA+ + G + + ++ L Sbjct: 554 QNIERLIAKDRSTGLSPEEKQELAQLLA 581 >gi|113868684|ref|YP_727173.1| DNA primase [Ralstonia eutropha H16] gi|113527460|emb|CAJ93805.1| DNA primase [Ralstonia eutropha H16] Length = 603 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 173/642 (26%), Positives = 285/642 (44%), Gaps = 57/642 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117 +CF C G + FL G S+ E+V+ LA G+ +P + +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGQSYPEAVRELAQSVGMSVPEERDRLPPGQRAEQQARSVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SLREHLR 174 + ATDF+ L++ + YL RG+ F LGYAPD ++ R Sbjct: 117 SDAMTRATDFYRRQLRS--APQAIQYLKGRGLTGEIAANFGLGYAPDDWQGLEAVFGSYR 174 Query: 175 QKGFSEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 S + L D D YDRFR+R++FPIR+++G VI FGGR + +GE Sbjct: 175 DDNVSAPLVECGLLIESDKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVMGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A + ++ + ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H+ + F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQTDAVVFSFDGDSAGRRAARRALEACLPHVADNKTIRF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDS++R G AF + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPAEHDPDSYVREEGTEAFATQVRNAMPLSRFLLQSVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + LR + + D I G + R + ++R + Sbjct: 404 LLQAMPAGGLRLQIVRELADATG-TTPAEIEAICGLRSDPARVGRFAQPRPRTRRQAPTG 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--DNNELQKLWSFLFSDFVE 528 L E ++ L+ +PA+ ++ + ++++ + L + + Sbjct: 463 L------------EQRVIQLLMCYPALSARLDEDARALLLGGESSDSEVLAHLVEACDSV 510 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q + L + + E+ V + A I D + LA Sbjct: 511 QGEVNFAAFSEHLAQSPYAEVYAVARAAVLREEIEEAP---AIQDFDAAITKLLA----- 562 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + ++ ++ TA E + L E+H + Sbjct: 563 EPLRRELDGLQAEVVAGTA---DEAAKQRMRWLVGEIHRRRQ 601 >gi|270291313|ref|ZP_06197535.1| DNA primase [Pediococcus acidilactici 7_4] gi|304385063|ref|ZP_07367409.1| DNA primase [Pediococcus acidilactici DSM 20284] gi|270280159|gb|EFA25995.1| DNA primase [Pediococcus acidilactici 7_4] gi|304329257|gb|EFL96477.1| DNA primase [Pediococcus acidilactici DSM 20284] Length = 618 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 161/644 (25%), Positives = 295/644 (45%), Gaps = 43/644 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I +++ +YV + N + CPFHDEKTPSF ++ K + Sbjct: 5 IPEEVIDNVRSAVNIVDVVSRYVQLRKAGKNL-----FGICPFHDEKTPSFSVSEDKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIR 119 +CFSC G+ FL L SF E+V+R+A VPL K K Q+++I Sbjct: 60 HCFSCGRGGNVFKFLMDLEKISFPEAVRRVAEFGNVPLDDKYVKKSPKSAYSATQSEMIG 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A + +HH L ++ YL +RGI ++ F LG+AP + L L+++ Sbjct: 120 LYEKAAELYHHVLVNTQLGEKALAYLKKRGITEADMQDFDLGFAPADQDLLLSFLKEQQI 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 ++++ ++GL I+ + DRF NR++FPI+ + G+++AF GR+L K + KYLNSP Sbjct: 180 DQKQMQDSGLFIET-ADGSLKDRFFNRIMFPIKDNNGKIVAFSGRSLVKDDQHPKYLNSP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+KGK LYNF A + +IL EG+MDV++ +A V N +++ Sbjct: 239 ETSIFNKGKVLYNFSQARPEI----------VQKKTVILYEGFMDVIAAHRAQVANGIAT 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE +R L +++ R+V+CFDGD+PG RA KAI L+ +++ + + Sbjct: 289 MGTSLTEDHVRALKRVASRVVICFDGDEPGQRAIAKAIALIK--QTSDLQISVIFIPDNR 346 Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD ++R G +F+KL+ ++ L K + + +++ E I + Sbjct: 347 DPDEYVRDKGVESFQKLMNQTGESSTAFLLKFDRMGLNLANENDQLEYLKKALQRIGELN 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-------DQKGPSQRLMQS 469 D + Y + + + + + + + ++ Sbjct: 407 DALEQDLYLNQLAEEFSIDKRDLKNQLRESVADRIAHTPRQFDPGPAPAPPPTFENQVEK 466 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + K + + LL +NH + + Q L D + N +L+ ++ + Sbjct: 467 TENTPKKLSSVDISQYRLLARALNHHDVWLK-LQSLPDFYFPNEQLETIYMLAGGYLAKN 525 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + L E ++ ++ + + + ++L K Sbjct: 526 QEYDAADFMDYLKEPELQSVVANIESI-----------NLSPDYTEEEIEDYISLIKDVA 574 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 LS Q +++ + + T G E L L ++ + Q+++ Sbjct: 575 PLSEQISKVKSDLNEATRLGNQELQQQLTLKLISLYQKQQQLQN 618 >gi|303250976|ref|ZP_07337165.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253123|ref|ZP_07535004.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650193|gb|EFL80360.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859417|gb|EFM91449.1| DNA primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 580 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 176/615 (28%), Positives = 283/615 (46%), Gaps = 50/615 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DL+ I LI V + DY ACCPFH EK+PSF + SK F Sbjct: 4 SIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVMARDGKPQASYKTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 119 LYELLEAISRFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAYNSMDSVLRKFGT- 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KYLNS Sbjct: 176 NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV NVV+ Sbjct: 235 PESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L G Sbjct: 285 SLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R GK FE + ++ L D L+ ++ + +++L IN I Sbjct: 345 EDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLINRIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y + +L L + + R + + Sbjct: 405 GEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVRTPQIKRTPM---------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L L+ +P +++ A + + L L ++ Sbjct: 455 --------RLLTALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVSMGA 505 Query: 537 IHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRL 590 + + ++ ELL + V + + E + + + L R Sbjct: 506 LLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDRSLG 565 Query: 591 LS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 566 LSAEEKQELVMLIAQ 580 >gi|53802940|ref|YP_115382.1| DNA primase [Methylococcus capsulatus str. Bath] gi|53756701|gb|AAU90992.1| DNA primase [Methylococcus capsulatus str. Bath] Length = 571 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 175/615 (28%), Positives = 281/615 (45%), Gaps = 58/615 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DL+ I I +LI V + + + A CPFH EKTPSF + K F Sbjct: 4 RLPREFIDDLIARIDIVDLIDARVPLKKSGS-----SFLARCPFHSEKTPSFSVSREKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 Y+CF C G+ +SFL SF E+++ LA +AG+ LP P + + Sbjct: 59 YHCFGCGAHGNAISFLMDYEHQSFPEALETLATLAGIDLPKAMATPGANPSASL-QPVYD 117 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++E A F+ L+ + + YL +RG+ ++LGYAP SL + Sbjct: 118 ILERAAGFYIQQLRDHPDAGQAKIYLRKRGLTGEIARRYRLGYAPPGWNSL-----PADW 172 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +I++GL+I+ S YDRFR+R++FPIR RG+VI FGGRTL ++ KYLNSPE Sbjct: 173 PRTLLIQSGLVIEKGRSC--YDRFRHRIMFPIRDRRGRVIGFGGRTL-GDDTPKYLNSPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK LY L + R I++VEGY+DV++L Q G+ + V++L Sbjct: 230 TEVFRKGKELYGLHELLESTPRPRR----------ILVVEGYLDVIALAQHGINDAVATL 279 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ + + LL++ + IV CFDGD G +AA++A++ L L G + F+ L GED Sbjct: 280 GTSTSAEHVHLLFRFTREIVFCFDGDAAGHKAAWRALEASLPLLQEGREIRFIHLPAGED 339 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS IR G+ AFE I ++ P D L++ ++ + + RA L+ + ++ + Sbjct: 340 PDSLIRKEGREAFESRIGQASPFSDYLFRTLQKDLDLRSIEGRATLQKQARELLDRLPVG 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Q + + P+ + +++ L Sbjct: 400 AFRTLMEQRLSEFTGV-----------------------APPAPASKSLENRLGHPSGQV 436 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +P ++ L++ P + + E+ +N L + + + + Sbjct: 437 RPPSAWRNVVTLLLHRPRLAKLISPEIRARLIENPRAGPLIARILEYTDLRDTPTAGMLF 496 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L E GEL + L + T E + + R LS+ E Sbjct: 497 EHLRETPEGELARNLLKPGL------LTPEEGMEREFVDALDRVRALLRDERLSQLIE-- 548 Query: 599 EKQIAQVTAKGEAEK 613 + + AQ+T E Sbjct: 549 KSKAAQLTDSEREEL 563 >gi|261377613|ref|ZP_05982186.1| DNA primase [Neisseria cinerea ATCC 14685] gi|269146366|gb|EEZ72784.1| DNA primase [Neisseria cinerea ATCC 14685] Length = 584 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 180/612 (29%), Positives = 298/612 (48%), Gaps = 42/612 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIVHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLARLLGQEA--PKRHVKQKSYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLVLDGDFACLANLAESIKSHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETINRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566 Query: 596 EEIEKQIAQVTA 607 + ++ +++ Sbjct: 567 KSLKSGLSESEK 578 >gi|237746701|ref|ZP_04577181.1| DNA primase [Oxalobacter formigenes HOxBLS] gi|229378052|gb|EEO28143.1| DNA primase [Oxalobacter formigenes HOxBLS] Length = 603 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 183/635 (28%), Positives = 290/635 (45%), Gaps = 60/635 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL I I ++G V + N + CPFH EKTPSF + K FY Sbjct: 2 IPQSFIQDLLNRIDIVEVVGNRVQLKKAGAN-----FLGLCPFHTEKTPSFTVSPVKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD-----L 117 +CF C G ++FL G SF+E+V+ LA AG+ +P D ++ +++ Q L Sbjct: 57 HCFGCGRNGSAITFLMEHSGLSFVEAVEELAQGAGMTVPRDDTRVSPEQRAQKQAKTLAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A+ ++ LK + YL +RG+ F LGYAP +R SL+ Sbjct: 117 TEVMTQASRYYRQQLKQSEAA--IAYLKKRGVSGEMAFRFGLGYAPATRDSLKNGFENYR 174 Query: 178 FSE-----EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 E I + + YDRFR+R++FPIR++RGQVIAFGGR L KGE K Sbjct: 175 ADELVEAGLVIEKHEDDRAVVSGERRYDRFRDRIMFPIRNTRGQVIAFGGRILEKGEP-K 233 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET LF KG LY F A ++ + ++++VEGYMDV++L Q G Sbjct: 234 YLNSPETPLFQKGSELYGLFEARQAIR----------EAGYVLVVEGYMDVVALAQLGFP 283 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V++LGTA T Q++ L + + RIV FDGD+ G AA +A++ L + V F+ Sbjct: 284 QSVATLGTACTSAQVQKLMRQTDRIVFSFDGDNAGKGAARRALEASLPLVSDTKSVAFLF 343 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L DPDS++R YG AFEK + ++PL + + + NT + RA + K Sbjct: 344 LPPEHDPDSYVREYGAGAFEKQVEGAMPLSEFMLQELVAGNDMNTLEGRARAQHKAKPWC 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR I +L Q+ Q E + + AR R ++ R L Sbjct: 404 QAMAPSALRL----QIMRKLGQITQTPDDELEAFLEVARPVARSRRREARLPRPPVVGL- 458 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKY 531 E ++ L+ +P + ++ I + + L + S E Sbjct: 459 -----------ERQVMRLLLMYPQFAARLSEADIGAIVDFSPDKGDLLKTVLSAIRELGE 507 Query: 532 ---------------FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 E++ +R + + L ++ + S + + + Sbjct: 508 QGSYATLVEYLRSGKVDCEQLVHETLDREYEQELALMELVGAVRQIRSRVLASEMEKLFS 567 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 +R+ L +Q+EE++K++AQ + ++ Sbjct: 568 SGLVGEEENRRYYELKKQQEELKKEMAQENLREKS 602 >gi|308176718|ref|YP_003916124.1| DNA primase [Arthrobacter arilaitensis Re117] gi|307744181|emb|CBT75153.1| DNA primase [Arthrobacter arilaitensis Re117] Length = 627 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 149/650 (22%), Positives = 259/650 (39%), Gaps = 45/650 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ + + ++ YV G Y CPFHDE++PSFH G + Sbjct: 5 IKREDIDEVRNRVDLREVVESYVTLKSAG----IGSYKGLCPFHDERSPSFHIRPQLGTF 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD ++F+ + SF E+V+ LAA L D + + + L+ Sbjct: 61 HCFGCGESGDVIAFIQKMDHSSFTETVELLAARINYELHYEDGGPGPRREDYGKRQRLVD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +VA +FF L +L RG D F +GYAP +L +HLR KGF+ Sbjct: 121 AHKVAEEFFRAQLATEEGSAGREFLAGRGFDPEVTAQFSVGYAPKGWDALLKHLRSKGFA 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++ G+ +G+ YDRFR R+++PIR G I FG R L + + KYLN+PE Sbjct: 181 DDELKLTGMFSEGNR--GIYDRFRGRVMWPIRDLSGATIGFGARKLYEDDQGPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + KS I++VEGY DV++ AG+ V++ Sbjct: 239 TSLYKKSQVLYGLDLAKKQISKS----------RQIVVVEGYTDVMACHLAGITTAVATC 288 Query: 299 GTALTEYQLRLLWK------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++ + ++ FDGD G +AA +A + + + + Sbjct: 289 GTAFGTDHIKIARRLLQDDGTGGEVIFTFDGDAAGQKAALRAFEEDQRFIA---QTYVCV 345 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A +LI PL + + E + + NT + R + + Sbjct: 346 EPSGADPCDLRLHRGDEAVRELIELKRPLFEFAIRAELKKFNLNTVEGRVQALRQTAPIV 405 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------- 465 IKD +R Y++ + L + + + Q Q Sbjct: 406 AQIKDSAIRPAYARELAGWLGMNNEDVNRSVGASIKRARLPKNAEAQAPRPQPGEAEQAL 465 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFS 524 + + E L +I P + EQ+Q + R+ + + + Sbjct: 466 PAAPAFERPDHRDPVMRLERQALEVVIQQPQRLKDEQWQAFYEARFLAPAHSAVHDGIVA 525 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + E+ +QL V + + S A+ Y + Sbjct: 526 ASS--AGASATSWVEVIRD----EVPEQLRSFVSELAVTSIP--ASDEHSLNRYCADIIN 577 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ +K E+ ++ + E E+ A + L E+ ++ + Sbjct: 578 GLIELQITHRKAELIGRLQRAEMMPEGEEYAQINRELMELEMRRRILRGT 627 >gi|253733188|ref|ZP_04867353.1| DNA primase [Staphylococcus aureus subsp. aureus TCH130] gi|253728728|gb|EES97457.1| DNA primase [Staphylococcus aureus subsp. aureus TCH130] Length = 605 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E + D+ G + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|148268046|ref|YP_001246989.1| DNA primase [Staphylococcus aureus subsp. aureus JH9] gi|150394114|ref|YP_001316789.1| DNA primase [Staphylococcus aureus subsp. aureus JH1] gi|257793638|ref|ZP_05642617.1| DNA primase [Staphylococcus aureus A9781] gi|258420134|ref|ZP_05683089.1| DNA primase [Staphylococcus aureus A9719] gi|295406685|ref|ZP_06816490.1| DNA primase [Staphylococcus aureus A8819] gi|297245733|ref|ZP_06929598.1| DNA primase [Staphylococcus aureus A8796] gi|147741115|gb|ABQ49413.1| DNA primase [Staphylococcus aureus subsp. aureus JH9] gi|149946566|gb|ABR52502.1| DNA primase [Staphylococcus aureus subsp. aureus JH1] gi|257787610|gb|EEV25950.1| DNA primase [Staphylococcus aureus A9781] gi|257843845|gb|EEV68239.1| DNA primase [Staphylococcus aureus A9719] gi|294968432|gb|EFG44456.1| DNA primase [Staphylococcus aureus A8819] gi|297177384|gb|EFH36636.1| DNA primase [Staphylococcus aureus A8796] gi|315129840|gb|EFT85830.1| DNA primase [Staphylococcus aureus subsp. aureus CGS03] gi|329727678|gb|EGG64134.1| DNA primase [Staphylococcus aureus subsp. aureus 21172] Length = 605 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL +RG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQDRGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E + D+ G + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|32034494|ref|ZP_00134666.1| COG0358: DNA primase (bacterial type) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208938|ref|YP_001054163.1| DNA primase [Actinobacillus pleuropneumoniae L20] gi|126097730|gb|ABN74558.1| DNA primase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 580 Score = 358 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 175/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPSSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVINRDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ + I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISRFYQQNLTQDIPSQS--YLQNRGLSAEIIARFEIGFAYNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F AL + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFQALQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIQQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRAQGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAIPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + + + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRSQAVQKKAVQTPQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A + + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLEEPGFELLLE-LVEVCRQKVGVS 502 Query: 534 PEEIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ ELL + V + + E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLADWEHLVTSENIETTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 LS +K+E+ IAQ Sbjct: 563 SLGLSAEEKQELVMLIAQ 580 >gi|237785263|ref|YP_002905968.1| DNA primase [Corynebacterium kroppenstedtii DSM 44385] gi|237758175|gb|ACR17425.1| DNA primase [Corynebacterium kroppenstedtii DSM 44385] Length = 645 Score = 358 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 133/650 (20%), Positives = 243/650 (37%), Gaps = 48/650 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + PI ++G+YV + PF DEKTPSFH +KG+ Sbjct: 5 RIPESDIDAIRERTPIEEVVGEYVQLKPAGS----DSLKGLSPFKDEKTPSFHVRPNKGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y+CFS GD SFL + SF E+V++ A G + ++E+ + L+ Sbjct: 61 YHCFSTGKGGDVFSFLMEMEQVSFPEAVEQCAERIGYTINYQGGGPGRREEPGTRQRLVA 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + +F+ L +L +RG E F GYAP +L + L +KGF Sbjct: 121 INKATQEFYREHLDTDEAAPARQFLLDRGFSQDHAEQFGCGYAPGGWDTLTKFLLRKGFD 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++ AG+ DRF RL +PIR++ VI FG R L + KY+N+PE Sbjct: 181 VKELEAAGVTSQ--GRRGPIDRFHRRLTWPIRNTANDVIGFGARKLFDDDKLGKYMNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K K L+ A + ++VEGY DV+++ AGV V++ Sbjct: 239 TLLYKKSKVLFGIDQAKKNIA----------ERHQAVIVEGYTDVMAMHAAGVTTAVAAC 288 Query: 299 GTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA L+++ ++ FDGD+ G +AA +A + G V Sbjct: 289 GTAFGADHLQMVRRLMLDDSHFRGEMIYTFDGDEAGQKAAMRAFEGNQEF--LGKSFVSV 346 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 G+DP G A L++ +P+V+ + + + +T + R + + Sbjct: 347 -APNGQDPCDLRLSGGDAAVRDLVMSRIPMVEFVVRTTLASFDLHTTEGRLQAMEAVAPA 405 Query: 412 INHIKDQKLRYYYSQAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---- 466 + +KD L+ Y++ + L R + + R + + Sbjct: 406 VASVKDTTLQKAYARKLSGWLGWDDVSDVEAAVRRAARKPQSSGLKRGRVRQQRDTWSVK 465 Query: 467 ----------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 Q + E L + PA E + L + + + Sbjct: 466 SPAASGPQGSTQPRFTRPNPRNGELAGEREALKIALQEPAAAAELFDVLPAESFRHPTYR 525 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 ++ + E + L + + + + + + Sbjct: 526 EVSEGIRRAGGCAAAADVESGGNSWVTKVIENLPQPMGESMVTELM--VEPIHYEGEDME 583 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + ++ + + + Q E++ + ++ + + L L + Sbjct: 584 WFVRSTMVRLQAVWVGNQIAELKSTLERLRPSDD--EYNNLFGDLVALEQ 631 >gi|239993654|ref|ZP_04714178.1| DNA primase [Alteromonas macleodii ATCC 27126] Length = 592 Score = 358 bits (917), Expect = 3e-96, Method: Composition-based stats. Identities = 162/628 (25%), Positives = 281/628 (44%), Gaps = 46/628 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI DLL + ++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 KIPRDFIDDLLSRTDVVEVVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117 Y+CF C G+ +SF+ F+E+++ LA G+ +P E+K++ Q D Sbjct: 59 YHCFGCGAHGNAISFIMEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDD 118 Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++E FF H L+ K+ YL RG+ ++ +++GYAPDS +L + Sbjct: 119 YAVMEQVARFFQHQLRQNGNSKKAIDYLKNRGLSGDIVKQWEIGYAPDSWDALLNTFGKD 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++++ L+ D +YD FR+R++FPIR RG+V+ FGGR L KYLNS Sbjct: 179 QQRIKQLVDLKLVNKNDQG-RTYDFFRDRIMFPIRDKRGRVVGFGGRVL-DDGGPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG L+ F+ A + S +++VEGYMDV++L Q + + Sbjct: 237 PETRIFHKGSELFGFYSARQKNR----------SLDTVVIVEGYMDVVALSQFDINIATA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + IV C+DGD G AA++A++ L L G R++F+ L G Sbjct: 287 ALGTATTPEHIQMLVRATSHIVCCYDGDRAGREAAWRALENALPALKDGVRISFLFLPDG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+ +R GK AF +++ +++PL ++ + + TP+ + L+ I Sbjct: 347 EDPDTMVRQVGKDAFMEMLDDAMPLSRFFFENLLKTHNVGTPEGKIALKKAAMPLIESTL 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + + + + + + + + ++ + K KL Sbjct: 407 GDDQKQMLLEELAKHTGEFDR---------FKLQQDITKANQGSKQAYSPNRNQVNKPKL 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 S L+ L++ P + ++ N L + S V Sbjct: 458 SPL-----RMLIRLLLDKPELATLCEDVQIDIFAGSNAAGMDLLRDVHSYCVSHPQAKTA 512 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + +L Q D + Y + A SR + Sbjct: 513 QLVENFRDHPHSSTIAKLLLQEHLVK---------DEDAERVYNDSFARLLDGHFDSRIE 563 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623 I + Q + E ++ +L+ + Sbjct: 564 TLISRSRVQPLTQAEKQELNLLMRERQK 591 >gi|239814769|ref|YP_002943679.1| DNA primase [Variovorax paradoxus S110] gi|239801346|gb|ACS18413.1| DNA primase [Variovorax paradoxus S110] Length = 659 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 174/685 (25%), Positives = 287/685 (41%), Gaps = 75/685 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P FI++L+ + ++G+YV + N + CPFH EK+PSF + +K Sbjct: 1 MTIPASFIQELIARADVVEIVGRYVQLKKAGAN-----FMGLCPFHGEKSPSFSVSPTKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK------EKIQ 114 FY+CF C V G+ + FL G F+E+V LA G+ +P D ++ + Q Sbjct: 56 FYHCFGCGVHGNAIGFLMEHAGMGFVEAVHDLAGQYGLQVPEDDASPAERARAASQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + + +L+ A YL RG+ F +GYAP +L Sbjct: 116 ATLTDVLEKAGEAYRKALRQAPGA--IEYLKGRGVSGEVARQFGIGYAPAGWRTLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + + + E+GL+I YDRFR+R++FPIR+ +G+ I FGGR L E Sbjct: 173 -PDYDDPLLAESGLVIVNAEDGAEDAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDEK 230 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET +F KG+ LY + A + F ++ EGYMDV++L Q G Sbjct: 231 PKYLNSPETPVFSKGRELYGLYEARAAFR----------ERGFALVTEGYMDVVALAQLG 280 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L++ + +V FDGD G RAA KA+D L + + F Sbjct: 281 FPNAVATLGTACTTEHVQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIKF 340 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDSFIR +G AF + I E+ PL + + E T + RA + +++ Sbjct: 341 LFLPAEHDPDSFIREFGADAFARFIQEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVRP 400 Query: 411 CINHIKDQKLRYYYSQAIR----------DRLQQLFQKYITEHSGYGRYW---------- 450 + + D L+ I L + + Sbjct: 401 LWSAMPDGALKRQLLSEIAALVQLDAAALSELWASTPGPRRPAAAPAQRQGDAGHESDYP 460 Query: 451 -------------------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +K + + G + ++ +GK +P + LL + Sbjct: 461 DMPPPAEYEPPRYESDSKPRKFTKGKRWGGKFEAPIEPLRGRGKPPSRPDVAARLLLSNM 520 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 A+ E + L D+ L+++L S E + + + F L + Sbjct: 521 AQWDALSHELHVMLCDLP---GPHGALFTWLDSQLHEHGVQPWAALREGMRGLDFEALAE 577 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 +L A + E ++ D + L R L Q+ E + + Sbjct: 578 RLMSVSESAPVPEGEEEQHLADAAKELASVLDFMLDDR-LKAQQSEAIAAVGKDPKAL-- 634 Query: 612 EKTAILISILHEVHIQIHQIESQEA 636 E+ L + E+ +++ ++ A Sbjct: 635 ERYKALEARRLELRNRLNPRGAETA 659 >gi|167768031|ref|ZP_02440084.1| hypothetical protein CLOSS21_02574 [Clostridium sp. SS2/1] gi|317498376|ref|ZP_07956671.1| DNA primase [Lachnospiraceae bacterium 5_1_63FAA] gi|167710360|gb|EDS20939.1| hypothetical protein CLOSS21_02574 [Clostridium sp. SS2/1] gi|316894270|gb|EFV16457.1| DNA primase [Lachnospiraceae bacterium 5_1_63FAA] Length = 591 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 161/610 (26%), Positives = 277/610 (45%), Gaps = 34/610 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I +LI YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MIYGEEIIEEVRSRNDIVDLISTYVPLKKKGS-----SYFGLCPFHNEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLI 118 YYCF C G+ +FL SF E+++ LA AG+ LP + E K + L Sbjct: 56 MYYCFGCGAGGNVFTFLMEYENFSFPEALKYLAERAGMELPEEELNEEAKRAMDEKARLR 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +++ ++F++ L + R ++ YL +RGI I+ F LGYA L L+ KG+ Sbjct: 116 EMNKLSANYFYYLLHSKRGQKGLAYLKDRGITDATIKHFGLGYADIYNDDLYRFLKSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E + ++ L+ + S D+F NR++FPI +VI FGGR + S KYLNS E Sbjct: 176 SDEDLKDSALVTIDERRGGS-DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGSPKYLNSKE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + +K IIL EGYMDV+S+ QAG N V++L Sbjct: 234 TKLFDKSRNLYGLNFARSSRKK------------EIILCEGYMDVISMHQAGFTNAVAAL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL + + ++L FD D+ G RA +AI + G V + L+ +D Sbjct: 282 GTAFTSGHGTLLKRYTENVILSFDSDEAGQRAILRAIPI---LKEAGLTVRVLDLTPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G A E+ I +++ K + P+ + + + + I++ Sbjct: 339 PDEFIKGLGAQALEERIRKAMSSFMFQVKVAAGRYDQDDPESKTQFQHEAAKLLATIEEP 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + YG +A+ + ++ + V + Sbjct: 399 LERKNYIEAVSREYYIGAKDLEDLVNYYGTSGYSSAQRQQTTP--RQQERRLQVNEAKEE 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K + LL ++N P + + + + + LF + E+K +P +I Sbjct: 457 KKKQPQKLLLTWMVNEPQLFDKLEGIIGPDDFYEQIYHGVALLLFKQYEEEKAVIPGKIL 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRFRL 590 + + + + +L + + + D+ + ++ A R++ Sbjct: 517 NQYTDLEDQKKIAELFNTTLKISPLAEDRDKALNDIVRRVKEDSIEQQMNATNDILRWQD 576 Query: 591 LSRQKEEIEK 600 L ++K + K Sbjct: 577 LIKEKANLAK 586 >gi|305680980|ref|ZP_07403787.1| DNA primase [Corynebacterium matruchotii ATCC 14266] gi|305659185|gb|EFM48685.1| DNA primase [Corynebacterium matruchotii ATCC 14266] Length = 630 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 130/647 (20%), Positives = 254/647 (39%), Gaps = 44/647 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + I +IG+YV + PF DEKTPSFH + G+ Sbjct: 5 RIPNSDIQAIRERAAIEEIIGEYVQLKPSGS----DSLKGLSPFKDEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 Y+CFS GD +FL + +F E+V+ +A + + + LI Sbjct: 61 YHCFSTGKGGDVFNFLMEMEHLTFPEAVELVADKINYHINYQGGSTGAPAVEPGTRKRLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A F+ L+ + + +L +RG I F+ GYAP+ ++ +HL +K F Sbjct: 121 EANRAAHAFYRKQLETPQAQVARTFLLDRGFSKELIYSFECGYAPEGWDAVTKHLLKK-F 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + ++ AGL + DRFR RL++PI++ G VI FG R L + + KYLN+P Sbjct: 180 TFPELEAAGLSV--MGRRGPVDRFRRRLLWPIKNISGDVIGFGARKLFEDDQLGKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K K L+ A + SS ++VEGY DV+++ AGV V++ Sbjct: 238 ETLLYKKSKVLFGLDRAKKNIA----------SSRQCVVVEGYTDVMAMHAAGVATAVAT 287 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + L+++ ++ FDGD+ G +AA +A + + Sbjct: 288 CGTAFGDDHLQMIRRLMLDDTYFRGELIYTFDGDEAGQKAAKRAFEGNQKFTG---QSYV 344 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + DP G A L+ +P+ + + + + +TP+ R + Sbjct: 345 AVAPDNLDPCDLRLQKGDAAVRDLVASRVPMFEFMIRAVIADYRLDTPEGRLQAMRRAVP 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------KGPSQ 464 + I D+ L+ Y++ + + + + + + A R + Sbjct: 405 IVASIHDRALQSEYARRLSGWVGWMDEDEVLSQVRVAARNPRPAEPRRAVRFDSDAAVAV 464 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 Q+ L + + L + +P ++ + + + + + + + + Sbjct: 465 DAPQARLPQPDAKSIQLWPQRESLKLALQYPGVVADGFDAVPEAAFSFETYRVIRHAIAQ 524 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + E + L + + L V + + +A Sbjct: 525 AGGC-----RAAVVGEWAGMVASE-IDDLIGRSLVSELVVEDIHLQGESVETYWDRTVA- 577 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + +S + +++ ++ ++ + + + + L + Q Q+ Sbjct: 578 RLQEQQISNEISQLKSKMQRMRPSDDEQAYRSMFANLIALEQQKKQL 624 >gi|253732215|ref|ZP_04866380.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253724004|gb|EES92733.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 605 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E + D+ G + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNIINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ + + + + + Sbjct: 571 --IESLNHKLREATRIGDVDLQKYYLQQIVAKNKER 604 >gi|238018970|ref|ZP_04599396.1| hypothetical protein VEIDISOL_00830 [Veillonella dispar ATCC 17748] gi|237864454|gb|EEP65744.1| hypothetical protein VEIDISOL_00830 [Veillonella dispar ATCC 17748] Length = 590 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 277/631 (43%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I+ + I ++I ++V +R N YW CCPFH+EKTPSF KGFY Sbjct: 5 FENELIEQIKDANDIVSVISEHVALKKRGKN-----YWGCCPFHNEKTPSFSVAPEKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF CH G+ + FL L SF+E ++RLA A +PLP P+ +++ + L Sbjct: 60 YCFGCHASGNVIKFLMELEHLSFVEVLERLANRANIPLPEAKLSPEQRARDERRKKLYEA 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+A FFH+ L + + K YL +RG+ IE FKLG+APD L ++G Sbjct: 120 SELAATFFHNCLTQTSIGKVGLDYLKKRGLTKETIEKFKLGFAPDGWDKLYRAFHERGID 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + ++E L+ YD FRNR++FPI +G+V+AFGGR + + KYLNSPE+ Sbjct: 180 DSILLELNLVRKNQKG-QFYDFFRNRIMFPIMDGKGRVVAFGGRVM-DDSTPKYLNSPES 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK L+ F A ++ ILVEGYMDV+S GV NVV+SLG Sbjct: 238 AIFEKGKLLFAFDKAYKSIR----------QERQAILVEGYMDVISAHNHGVTNVVASLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T +L + + IVL +D D G +AA +AI+L +V + + G+DP Sbjct: 288 TAYTRDHGHILMRQADEIVLAYDMDGAGRQAAARAIEL---LQNTDFKVRVLAMPDGKDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R +G AF+ L+ +++ +D L N + + + + I +I Q Sbjct: 345 DDYVRNHGGQAFKDLVTKAVKPLDYLLSESLIKHDTNDTEGKQAVLADVFPYIANIDSQT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + L Y R + K + S L L KG K Sbjct: 405 QRDDALKTLALPLWLDNSSIFR----YFRDYVKKGQIELVDTASAPLPTQDLPKGDAEK- 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL +LQ L ++ E + + +F+ F ++ I Sbjct: 460 -------LLSLAFTDGEVLQHMMSYLPLEDFEKIEYRGIIEKIFTLFKQEGRLDDTTIQS 512 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + ++S + + + + R L Q + Sbjct: 513 VLSPSEYD--------------IYSRLVVMSDDEYKVQVPGLIR-KIRLHSLREQYKAHS 557 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q+ G++ + L E+ I + Sbjct: 558 IMADQLKRAGDSTFISEL-HKCQEIQNLIRE 587 >gi|15924552|ref|NP_372086.1| DNA primase [Staphylococcus aureus subsp. aureus Mu50] gi|15927142|ref|NP_374675.1| DNA primase [Staphylococcus aureus subsp. aureus N315] gi|156979880|ref|YP_001442139.1| DNA primase [Staphylococcus aureus subsp. aureus Mu3] gi|253314933|ref|ZP_04838146.1| DNA primase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006348|ref|ZP_05144949.2| DNA primase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|258411062|ref|ZP_05681342.1| DNA primase [Staphylococcus aureus A9763] gi|258437394|ref|ZP_05689378.1| DNA primase [Staphylococcus aureus A9299] gi|258443600|ref|ZP_05691939.1| DNA primase [Staphylococcus aureus A8115] gi|258446807|ref|ZP_05694961.1| DNA primase [Staphylococcus aureus A6300] gi|258448721|ref|ZP_05696833.1| DNA primase [Staphylococcus aureus A6224] gi|258453538|ref|ZP_05701516.1| DNA primase [Staphylococcus aureus A5937] gi|269203190|ref|YP_003282459.1| DNA primase [Staphylococcus aureus subsp. aureus ED98] gi|282893063|ref|ZP_06301297.1| DNA primase [Staphylococcus aureus A8117] gi|282928195|ref|ZP_06335800.1| DNA primase [Staphylococcus aureus A10102] gi|296275816|ref|ZP_06858323.1| DNA primase [Staphylococcus aureus subsp. aureus MR1] gi|54038870|sp|P63965|PRIM_STAAN RecName: Full=DNA primase gi|54041648|sp|P63964|PRIM_STAAM RecName: Full=DNA primase gi|13701360|dbj|BAB42654.1| DNA primase [Staphylococcus aureus subsp. aureus N315] gi|14247333|dbj|BAB57724.1| DNA primase [Staphylococcus aureus subsp. aureus Mu50] gi|156722015|dbj|BAF78432.1| DNA primase [Staphylococcus aureus subsp. aureus Mu3] gi|257840212|gb|EEV64676.1| DNA primase [Staphylococcus aureus A9763] gi|257848599|gb|EEV72587.1| DNA primase [Staphylococcus aureus A9299] gi|257851006|gb|EEV74949.1| DNA primase [Staphylococcus aureus A8115] gi|257854382|gb|EEV77331.1| DNA primase [Staphylococcus aureus A6300] gi|257857999|gb|EEV80888.1| DNA primase [Staphylococcus aureus A6224] gi|257864269|gb|EEV87019.1| DNA primase [Staphylococcus aureus A5937] gi|262075480|gb|ACY11453.1| DNA primase [Staphylococcus aureus subsp. aureus ED98] gi|282590002|gb|EFB95084.1| DNA primase [Staphylococcus aureus A10102] gi|282764381|gb|EFC04507.1| DNA primase [Staphylococcus aureus A8117] gi|285817244|gb|ADC37731.1| DNA primase [Staphylococcus aureus 04-02981] gi|312829950|emb|CBX34792.1| DNA primase [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 605 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E + D+ G + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|325928845|ref|ZP_08190012.1| DNA primase [Xanthomonas perforans 91-118] gi|325540818|gb|EGD12393.1| DNA primase [Xanthomonas perforans 91-118] Length = 582 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 169/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LDAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + R R + SLV+ Sbjct: 405 PEGAFGDLMKQELARLTG---------VGATASAQQSAPRPRPPARMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAERQELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|239626723|ref|ZP_04669754.1| DNA primase [Clostridiales bacterium 1_7_47_FAA] gi|239516869|gb|EEQ56735.1| DNA primase [Clostridiales bacterium 1_7_47FAA] Length = 638 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 145/661 (21%), Positives = 261/661 (39%), Gaps = 74/661 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + I+++ + I ++I YV ++ N Y+ CPFH+EK+PSF + K Sbjct: 1 MYYPDEVIEEVRMKNDIVDVISGYVKLQKKGAN-----YFGLCPFHNEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ L+F+ +F E++ LA AGV LP + ++ + + L+ Sbjct: 56 MYYCFGCGAGGNVLTFVMEYENYTFQEALAHLADRAGVSLPKMEYSKEAREQAEHRARLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + ++A ++F++ LK + K + Y D RG+ I F LGY+ + L L+ KG Sbjct: 116 EVNKLAANYFYYQLKQPQGKLGYEYLHDRRGLLDDTIVHFGLGYSNKTSDDLYRFLKGKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + + + + GL+ + D+F NR++FPI +VI FGGR + KYLNSP Sbjct: 176 YEDSFLKDTGLVTLEERGGR--DKFWNRVMFPIMDVNNRVIGFGGRVM-GDGEPKYLNSP 232 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K +NLY A + ++++ EGY+DV+SL QAG N V+S Sbjct: 233 ETKLFDKSRNLYGLNYAR------------TSREGYLLICEGYLDVISLHQAGFTNAVAS 280 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T +L + + +++L +D D G++AA +AI + G + + + + Sbjct: 281 LGTAFTSQHANVLKRYTDQVILTYDSDGAGIKAALRAIPI---LKEVGMSIKVLNMKPHK 337 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AF + I E+ + + P+++ + + Sbjct: 338 DPDEFIKNMGADAFRQRIKEAKNSFLFEVDVLRQGYQMDDPEQKTRFYQETAKKLLQFGE 397 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------------------------------- 444 R Y QA+ + + Sbjct: 398 ALERENYLQAVAREQMIPADELRGLVNRMGMSFGMKSGDSLDHGGKVQHRAVEEDMYPDY 457 Query: 445 -----------GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 GY Y + R K + LL LI Sbjct: 458 GYYEGYDGPPEGYYDYGEAGPEGRSGYQDGGEARPKRPKKPDKEDGIRRSQRLLLTWLIE 517 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 +P + + + + + ++ +F + + + + + L Sbjct: 518 NPELFDKIKGIITSDDFVEDLYHQVAQMVFEGQASGNLNPAAILSHFINDEDQYKEVAAL 577 Query: 554 DRQVRDAGLWSATTEANIVD----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L + + + VR+ A + + ++ + + + ++ Sbjct: 578 FNASLKESLNNEEQKKAFSETVMKVRKNSLDAASRNAKDITQLQEIIKQQAALKKLRISL 637 Query: 610 E 610 + Sbjct: 638 D 638 >gi|212711168|ref|ZP_03319296.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM 30120] gi|212686336|gb|EEB45864.1| hypothetical protein PROVALCAL_02240 [Providencia alcalifaciens DSM 30120] Length = 581 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 165/623 (26%), Positives = 283/623 (45%), Gaps = 48/623 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +L+ V ++ N + ACCPFH+EKTPSF N + F Sbjct: 4 RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGERQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 YYCF C G+ + FL F+E+++ L+A+ G+ +P + + + +L + Sbjct: 59 YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGTSQIELHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ F+ +L + + YL +RG+ + I F +G+AP +L + S Sbjct: 119 LMDKINQFYCAALNHPSANKAKDYLSQRGLSADIISHFSIGFAPPGWDNLLKKFAVNPES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ EAG+L+ +++ YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RQQLDEAGMLV-TNDNGRVYDRFRERIMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + A + + +++VEGYMDV++L Q ++ V+SLG Sbjct: 237 DIFHKGRQLFGLYEATQNSSELAK----------LLVVEGYMDVVALAQYDIRYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGRDAAWRALENALPYLTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK AFE+ + + L L+ T + RA++ I I + Sbjct: 347 DSLVRKEGKDAFEQRMENAQSLSTFLFDSLVPQVDLKTQEGRAKISKLAIPLIKQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y +Q + + + + N + K + Sbjct: 407 LRLYMAQELGNFIGVPDISQVLAMIDRESTEPVNYQAPKLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+ L ++ + Sbjct: 452 -----RILIALLVQNPNFSELVPSLEGIAHIQMPGL-SLFQELVEVCRSTPGMNTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R + F + L++L D + I + + AL + + + Sbjct: 506 RYRDNNFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLI-------AK 557 Query: 600 KQIAQVTAKGEAEKTAILISILH 622 ++ ++T + E I +S + Sbjct: 558 ERTQRLTPEEREEVRLITLSRVK 580 >gi|221134906|ref|ZP_03561209.1| DNA primase [Glaciecola sp. HTCC2999] Length = 593 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 175/617 (28%), Positives = 284/617 (46%), Gaps = 47/617 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI DL+ I +++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPRDFIDDLIARTDIVDIVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSAEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEKIQ 114 Y+CF C G+ LSF+ F+E+++ LAA + +P ++K++ + Sbjct: 59 YHCFGCGEHGNALSFIMEFDRLEFVEAIEELAAHHSLDVPREQTNTPFNPQASQEKKQQR 118 Query: 115 TDLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L+E A FF H LK+ ++ YL +RG+ ++ +++GYAP +L + L Sbjct: 119 ENDYELMEKAAKFFQHQLKHHANSSKVIDYLKDRGLSGEIVKSWEIGYAPPEWQALADTL 178 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 ++ ++ ++ DN YD FR+RL+FPIR RG+VI FGGR L + KY Sbjct: 179 GATPEKAQQCVDLKIMTQNDNG-KRYDFFRDRLMFPIRDKRGRVIGFGGRVLDAEQGPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F KG LY A N + R I++VEGYMDV++L Q + Sbjct: 238 LNSPETRIFFKGSELYGLHRARNMQRHIDR----------IVVVEGYMDVVALSQFEINY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T ++L+ + + IV C+DGD G AA++ ++ L L G ++ F+ L Sbjct: 288 AVASLGTSTTPEHVQLMLRNTDEIVCCYDGDKAGRSAAWRTMENALPLLKDGKQMKFMFL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPD+ +R GKTA E L E++PL L+ + + + +A L + IN Sbjct: 348 PDGEDPDTMVRKIGKTALETLFSEAMPLSKFLFDNLLTRHNVGSIEGKASLRAEAEPLIN 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + + + L + + + P++ L Sbjct: 408 IVGGNIQKEILLGELSKLLGDYDRHQLERDI-----------TKANATPNRMLPPKRGAP 456 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKY 531 KLS+ P L+ LI HP++ + ++ + L L L +Q Sbjct: 457 QKLSQTPV---RMLIRLLIEHPSLA-QALPKVNPAAITDAGLPGLPFLIELHQFCSQQTN 512 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQV------RDAGLWSATTEANIVDVRQGYQQALALY 585 + + E F + L+ L Q ++ +T + I G +AL Sbjct: 513 VNTALVFEYFREHPFAQHLQTLLAQEWLVKDDEIQTVYVSTFKRLIDQFLVGQTEALIAK 572 Query: 586 KRFRLLSRQKEEIEKQI 602 R LS +++ K++ Sbjct: 573 SRSIGLSDEEKTTLKKL 589 >gi|169628798|ref|YP_001702447.1| DNA primase [Mycobacterium abscessus ATCC 19977] gi|169240765|emb|CAM61793.1| DNA primase DnaG [Mycobacterium abscessus] Length = 634 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 137/646 (21%), Positives = 244/646 (37%), Gaps = 36/646 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I +++G YV R CPFHDEK+PSFH + G Sbjct: 4 RIPDRDIAAIRERTRIEDIVGDYVQLKRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + +F+E+V+RLA G + + + L+ Sbjct: 60 FHCFGCGEGGDAYTFIQKIEHITFVEAVERLADRIGYTINYEGGGTAAQRDRGTRARLVA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ +L + YL ER D A + + G+AP +L +HL +KGF Sbjct: 120 ANAAAQEFYAAALDSPEAAPARQYLTERNFDGAAAKQYGCGFAPSGWDTLTKHLMRKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL + DRF RL++PIR+S G+VI FG R + +++ KY+N+P Sbjct: 180 FKELEAAGLSRE--GRRGPMDRFHRRLLWPIRASSGEVIGFGARKIFDDDTMPGKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K L+ A + K ++VEGY DV+++ AGV V+S Sbjct: 238 ETMLYKKSSVLFGLDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN----RVNFVLL 353 GTA + L +L +L L + + Sbjct: 288 CGTAFGDEHLSMLRRLMMDDSYFRGELIYVFDGDAAGQAAALKAFEGEQNLAGQSFVAVA 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G+ A L+ +PL + + R + + Sbjct: 348 PDGMDPCDLRLKSGEGALRDLVARRIPLFAFAIRSALAESDLEIAEGRVDALRRCVPMVA 407 Query: 414 HIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 IKD LR Y++ + + Q+ + E + +A R + + + Sbjct: 408 KIKDPTLRDEYARQLAGWVGWDDVAQVLARVREEAGKAAKGGSVSADRRPRGTETAAAPK 467 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S+ K REA L + PA + L + + + + + Sbjct: 468 VSMPDPKDPTLWPQREA--LKAALQFPAFAGPVFDSLTTDSFTHPGYVAVRTAIEVAGGT 525 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + E + + + L L + + + + Y ++ + Sbjct: 526 AAGIVGAEWIDVVRRQAASPHVVTLIN-----ALTAEVIQVDSDERLPRYIGSVLAKLQE 580 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + RQ E++ ++ +++ A++ L L + + Q Sbjct: 581 VWVGRQVAEVKSKLQRMSPVDNADEYHALFGDLVALEAYRRSLLEQ 626 >gi|325130609|gb|EGC53354.1| DNA primase [Neisseria meningitidis OX99.30304] Length = 590 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 180/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + +++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|147677241|ref|YP_001211456.1| DNA primase [Pelotomaculum thermopropionicum SI] gi|146273338|dbj|BAF59087.1| DNA primase [Pelotomaculum thermopropionicum SI] Length = 630 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 169/635 (26%), Positives = 283/635 (44%), Gaps = 40/635 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P D I+ + ++ I ++ +YV ++ + CPFH +++PSF K + Sbjct: 4 IPDDIIETVRLNSDIVEVVSRYVSLRKKGK-----YFTGSCPFHSDRSPSFTVTPDKQIF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121 +CF C+ GD FL +F E+V LA AG+ LP DP ++++ + L R+ Sbjct: 59 HCFGCNAGGDVFKFLMLKENLTFYEAVSMLARRAGIALPAREDPAGPERDRKKALLQRIN 118 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A DFF+ +L+ YL ERG+ ++ F++G+A +L + L +KG Sbjct: 119 DLAKDFFYENLRRHEAAAEARRYLAERGLSGEVLDRFQIGFALPGWSALLDFLSRKGCQP 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EAGL + GD+ YDRFRNR+IFPI G+V+ FGGR L G KYLN+PET Sbjct: 179 HDAAEAGLAVKGDSG-RYYDRFRNRIIFPIWDPVGRVVGFGGRVL-DGSLPKYLNTPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F KG+ LY A ++ ++VEGYMD ++ G N V+SLGT Sbjct: 237 FFSKGRILYGLHLARPAIR----------ERDCAVVVEGYMDAVTAHLHGAANTVASLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q RLL S +V+ +D D G+ AA + +DL G +V + G+DPD Sbjct: 287 ALTAEQGRLLINYSRNVVIAYDADAAGVAAAMRGMDL---LQELGFQVRVATIPDGKDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +IR G ++EKLI E+ L++ ++ E T + E+ + +K++ Sbjct: 344 EYIRRQGIQSWEKLIGEAPSLIEYKLQKAMEKGPVRTVTGKLEVMRQVFP-NLALKNEVE 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + +AI L ++ E + R+ + + + L K + Sbjct: 403 KEEGLKAIAGALNLTWETVAGE---FKRFEANLGKKWANPDNIVKTKHNILSKEEKLDHR 459 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E LL ++ P++ +E+ + N + QK++ L + + F P EI Sbjct: 460 GKLEIGLLRLVLEDPSLGTHVVEEMGPEPFRNPQYQKIFE-LCRNAAGRPVFRPAEIFSS 518 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + ++ V L N+V + + + ++ ++R +E Sbjct: 519 LEDD---------EKNVLSFLLTQDIPGENLVQIMKNHIDSIRRFERRERREALLKE--- 566 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 IA+ G L + ++ E Sbjct: 567 -IAKAEKAGNHSLCNELWREYIILRSIAEAEKNGE 600 >gi|172040997|ref|YP_001800711.1| DNA primase [Corynebacterium urealyticum DSM 7109] gi|171852301|emb|CAQ05277.1| DNA primase [Corynebacterium urealyticum DSM 7109] Length = 670 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 143/674 (21%), Positives = 252/674 (37%), Gaps = 69/674 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF DEKTPSFH +KG+ Sbjct: 8 RIPERDIEAIREATPIEEIVGEYVQLTPGG----VDSMKGLSPFKDEKTPSFHVRPNKGY 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CFS GD SFL + +F E+V+++A G + ++EK + L+ Sbjct: 64 FHCFSTGEGGDVFSFLMKMEHLTFPEAVEQVAERIGYRINYEGGGPGRREKPGTRQRLVA 123 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A +F+ + +L +RG + F GYAP +L +HL +KG Sbjct: 124 ANKAAFEFYREQFASDVQGADVARQFLIDRGFTQEHADQFGCGYAPLGWDTLTKHLLRKG 183 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F +++ AGL S DRF RL++PIRS G VI FG R L + + KY+N+ Sbjct: 184 FEFQELEAAGLSR--MGSKGPIDRFHRRLLWPIRSVAGDVIGFGARKLFEDDKLGKYMNT 241 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K K L+ A + + ++VEGY DV+++ AGV V+ Sbjct: 242 PETLLYKKSKVLFGIDQAKRSIAQK----------HQAVVVEGYTDVMAMHAAGVDTAVA 291 Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 S GTA L +L + I+ FDGD+ G +AA +A + R Sbjct: 292 SCGTAFGSEHLAMLRRFMLDDRYFRGEIIYTFDGDEAGQKAALRAFEGDQQFTG---RSY 348 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G+DP G A +L+ +P+ + + + E D R + Sbjct: 349 VTVAPGGQDPCDIRLERGDEAVRELVSNRIPMFEFVIRTLLEGYDTAAVDGRVHAMRRII 408 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + IKD LR YS+ + + E + GR K + +R Sbjct: 409 PVLAGIKDDALRDEYSRQAAGWVGFDDPDDIVAQVREEARRGRTEKPKLELKRGAARRER 468 Query: 466 LMQS----------------------------SLVKGKLSKKPSLREAALLLTLINHPAI 497 L + + + + L +L + P + Sbjct: 469 LAEKGGQAGPGAANQGGVPGGEDSGGHLRVVAGMERPDPKDELLLGIREVLKLGLQEPEL 528 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + + + + + + + + + + + + + ++ Sbjct: 529 AGQIFDLMPPESFLHPTYIAIVNAMAAAGGAAQAKSGSGWLDAVSNNVPDAMGQAVVSEL 588 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 L Y A+ + R +S + E+ Q+ ++ + E Sbjct: 589 AVEDLQCQQERLP------YYASAIMARMQERWVSNEVAELRAQMQRMRPDEDKEAYMAT 642 Query: 618 ISILHEVHIQIHQI 631 + L + + Sbjct: 643 FADLTALEKYRRSL 656 >gi|299533870|ref|ZP_07047237.1| DNA primase [Comamonas testosteroni S44] gi|298718154|gb|EFI59144.1| DNA primase [Comamonas testosteroni S44] Length = 688 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 173/688 (25%), Positives = 288/688 (41%), Gaps = 94/688 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK F Sbjct: 29 AIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 83 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQT 115 ++CF C G+ + FL G F+E+VQ LA G+ +P D + +++ Sbjct: 84 FHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKAE 143 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L L+E A + + LK + YL +RG+ + F LGYAP + L Sbjct: 144 TLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA- 200 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + ++ E GL+I G++ + YDRFR+RL+FPIR+ +G+ I FGGR E KYLN Sbjct: 201 -EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYLN 258 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKG+ LY + A L+ + ++ EGYMDV++L Q G N V Sbjct: 259 SPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANAV 308 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T ++ L++ + +V FDGD G RAA KA+D L + F+ L Sbjct: 309 ATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPS 368 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDSFIR +G AF + + ++ PL L + +E + RA + + + + + Sbjct: 369 EHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLL 428 Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWK----------------- 451 D L+ I L ++ + + R Sbjct: 429 PDGALKRQLLSEIAALAQLDSRDLSDIWAQEAARTAPIARRAPAPPGPQAPEWDAPAGNW 488 Query: 452 ---------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + R +K ++ + + P RE Sbjct: 489 ESAPDWADAAAPAPSYPSQGSGGNWSGRKEFGRQRKPWGKKGEDWNPPQLGPRPTPVSRE 548 Query: 485 AALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 L+ H ++E +++ + N L+ +L + F E + ++L Sbjct: 549 DQAARLLMCHMEFMEEMTHEDFDALARCNQSHAPLFRWLEAQFTESGPRSWAVLREQLQG 608 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L ++L A E + ++R+ + L L L R++ + K+IA Sbjct: 609 SPCEPLAQKLMSGA------HANPEGEVDELRKELRGTLNLIL-VDHLKREEAKALKEIA 661 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631 E + + Sbjct: 662 TDPTAA---------RRYIEFQQRRKNL 680 >gi|256751254|ref|ZP_05492134.1| DNA primase [Thermoanaerobacter ethanolicus CCSD1] gi|256749809|gb|EEU62833.1| DNA primase [Thermoanaerobacter ethanolicus CCSD1] Length = 595 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 159/635 (25%), Positives = 291/635 (45%), Gaps = 43/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y R+ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSREMIEKVIEANDIVDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L + ++ + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++AT +F++ L + ++ Y+ +RG+ I+ F +GY+ L L++KG+ Sbjct: 116 KVNKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR++ KYLN+PE Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q RL+ + +V+ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I + D+ Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + Q TE + + + + + R S K Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ L+ + + + + +N +L+ ++ + S + K +I Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + ++ +V + + L+ ++E+I Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ I + G+ EK L+ L ++ +I++ Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594 >gi|189424080|ref|YP_001951257.1| DNA primase [Geobacter lovleyi SZ] gi|189420339|gb|ACD94737.1| DNA primase [Geobacter lovleyi SZ] Length = 588 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 167/631 (26%), Positives = 279/631 (44%), Gaps = 50/631 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 D ++++ + I+ +IG+YV R +N + CPFH EKTPSF+ N ++ ++C Sbjct: 4 NDTVREVAERLSIAEIIGEYVSLKRSGSN-----FLGLCPFHGEKTPSFNVNPAREIFHC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRLIE 122 F C GD SF+ + G SF E++++LAA AGV + +K+ + ++ Sbjct: 59 FGCGAGGDIFSFVMKIEGISFPEALRKLAARAGVAIEDRPLTDAEKQLKTERDQQRAIML 118 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + + +L + YL ER +D + LGYAP+ R +L + LR KG E Sbjct: 119 LTAQHYRETLTRQPEGAVARSYLQEREVDPETAAAYGLGYAPERRDTLIQLLRAKGLPLE 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L I YD +RLIFPIR +GQ I F GR L KY+NSPE+ L Sbjct: 179 QAE--QLGIIRRGDRGWYDLLHHRLIFPIRDKQGQPIGFAGRVL-DNSLPKYINSPESPL 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 + K L+ AL ++ S I+VEGY D L+L +AG++N +++ GTA Sbjct: 236 YRKSSVLFGVDLALRDIR----------QSGTAIIVEGYFDHLALYRAGIRNALATCGTA 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ + LL K + R+ L FDGD+ G +A +A++L L V + L +GEDPDS Sbjct: 286 LTDGHISLLKKHAQRVCLLFDGDNAGRKATVRAMELCLEQA---LPVYVINLPQGEDPDS 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ +G AF + + + P + ++ D+R L + IKD R Sbjct: 343 LLQKHGVEAFNQRVAAAKPAFEQFLHWLLAKTPADSIDQRVRLMDEIIPRFQRIKDPVER 402 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + I L Q + +G + A+ + P + + Sbjct: 403 DLYQKEICRLLGVDLQAFRRRLAGQRDQQQPVAQRQTATKPVTQTIARDST--------- 453 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQR 540 + +L L +P E + L + + + L + + E L E+ R Sbjct: 454 --QETMLGLLAAYPEARLEI-RTLDLQQLFDQQHLPLAQAILAAGEGEHDGPLWPEVLAR 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + EL+ +L Q + +D R +Q L K+ R ++I Sbjct: 511 LEQEQQKELVARLLIQDQHL---------AGIDWRAALRQCLKRQKQGET--RGLKQIAL 559 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++A + ++E+ L+ ++ Q + Sbjct: 560 RLATLPE--DSEEYQELLKTADQLRNQKSAL 588 >gi|325204513|gb|ADY99966.1| DNA primase [Neisseria meningitidis M01-240355] Length = 590 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 179/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K + Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKKQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|38605698|sp|O05338|PRIM_STAAU RecName: Full=DNA primase Length = 605 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 262/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQSNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E + D+ G + Sbjct: 402 SSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYPEDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRREKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNGEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|313668078|ref|YP_004048362.1| DNA primase [Neisseria lactamica ST-640] gi|313005540|emb|CBN86976.1| DNA primase [Neisseria lactamica 020-06] Length = 590 Score = 357 bits (915), Expect = 4e-96, Method: Composition-based stats. Identities = 182/601 (30%), Positives = 283/601 (47%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ +++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + ++ S K Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQEAPKQHVKQKNYKLPPIS----------VK 449 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 450 QPVMPTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 +I + + + E + ++ R + E + + + G ++ L K + L + Sbjct: 507 QILEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|229828461|ref|ZP_04454530.1| hypothetical protein GCWU000342_00523 [Shuttleworthia satelles DSM 14600] gi|229793055|gb|EEP29169.1| hypothetical protein GCWU000342_00523 [Shuttleworthia satelles DSM 14600] Length = 649 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 157/663 (23%), Positives = 269/663 (40%), Gaps = 83/663 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + I + I ++IGQYV + + Y CPFH+EKT SFH N K FY Sbjct: 4 YSDELIDQVREANDIVDVIGQYVGLKKTGS-----AYVGLCPFHNEKTGSFHVNRGKQFY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +FL +F E+V+ LA AG+ LP + + ++ L+ + Sbjct: 59 HCFGCGAGGNVFTFLMNYENMTFPEAVKTLADRAGIALPERRMSKEDRARADKRSRLLEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F+ L+ Y +R + ++ + LGY +L +L+ KG+ + Sbjct: 119 NREAAKFYFAVLRGKDGATAMNYFRDRQLTEETMQKWGLGYTGSHSNALYRYLKGKGYED 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++++GL I ++D+F NR +FPI + G+VIAFGGR + +GE KYLNSPET+ Sbjct: 179 RDLVDSGL-IAISERRGAHDKFWNRAMFPIMDAGGKVIAFGGRVMGEGEP-KYLNSPETM 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K + L+ F A + +IL EGYMDV+S+ Q G N V+SLGT Sbjct: 237 IFNKSRTLFGLFLAKRTRR------------PQMILCEGYMDVISMHQNGFDNTVASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE ++L + + ++ L +D D G+RAA +AI L G + + +DPD Sbjct: 285 ALTEGHAQMLKRYTRQVYLSYDSDPAGIRAALRAIPL---LKDAGISCKIINMQPCKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F++ G A+E+ I E+ + + + P+ E + I+ ++ Sbjct: 342 EFMKKLGPDAYEERIKEAENSFMFTIRMLERDYQMDDPESNTEFFRQVALRISRFPEEIE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG------------------- 461 R Y QA+ DR + + AR + Sbjct: 402 RGNYIQAVADRYHRSAESIRQLVVHMASQEGILARRKSADKADKGAFSLNRSQRDPDEDA 461 Query: 462 ----------------------PSQRLMQSSLVKGKLSKKPSLRE-------AALLLTLI 492 P L + + ++ RE LL + Sbjct: 462 FAMADAYARAQDETEAAYRGSDPGMDLSPARTARKGPGQRSQPRETGMRQSQRLLLTWIT 521 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELL 550 P I + L + ++ + + ++S EQ P I + G + Sbjct: 522 EDPEIYRVVKPYLEPMDFEEGVYRDVAEEVWSQ-SEQGGVNPARIMDHFQEGDEGVQREV 580 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------LLSRQKEEIEKQIA 603 ++ + + ++A KR + L+ + +K++ Sbjct: 581 ARIFNTTVGRLTERTDRIKALRETLLRIKRAAMERKRRKGNAVDPDFLTEMIRD-KKKLQ 639 Query: 604 QVT 606 ++ Sbjct: 640 ELE 642 >gi|325201774|gb|ADY97228.1| DNA primase [Neisseria meningitidis M01-240149] gi|325208474|gb|ADZ03926.1| DNA primase [Neisseria meningitidis NZ-05/33] Length = 590 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 180/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAEAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + +++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|261363709|ref|ZP_05976592.1| DNA primase [Neisseria mucosa ATCC 25996] gi|288568269|gb|EFC89829.1| DNA primase [Neisseria mucosa ATCC 25996] Length = 590 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 182/613 (29%), Positives = 298/613 (48%), Gaps = 42/613 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ +++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPIML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKSHAAVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + Q+ + + +E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETVNQIFQSTLYSEEMEGGSEEDRENFQIGMKKLLNELKYKQIETLKQ 566 Query: 596 EEIEKQIAQVTAK 608 + ++ + + K Sbjct: 567 KSLQSGLNENEKK 579 >gi|117921524|ref|YP_870716.1| DNA primase [Shewanella sp. ANA-3] gi|117613856|gb|ABK49310.1| DNA primase [Shewanella sp. ANA-3] Length = 574 Score = 356 bits (914), Expect = 5e-96, Method: Composition-based stats. Identities = 173/620 (27%), Positives = 287/620 (46%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P ++++ + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEDLAGQLGLEVPREQGTGKRQDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ FF L+ +DK+ YL RG+ +E F +G+APD L R Sbjct: 116 LMEEASRFFQTQLRQHQDKQKVIDYLAYRGLSDDIVEHFGIGFAPDGWDGLLSRYRHSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQYGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGNEAAWRALETALPLLKPGDKVRFMFLPQSED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE+++ ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFEQMMESAITLPEFLFDTLATKF----GTDKGNLAKQAFGLIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ K KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSDDMKKKLGFSVKQTKPTASTGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L + + ++ Sbjct: 448 ------RLAIALLVQHPELGVGLSPQPALNHLQMPGIDL--LPLLLELTREHRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + ++ +++AL + + + ++ +E+ Sbjct: 500 EQFRDSPHSGTLHKLAQW---------DHQVADENLLGEFKKALI-WLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + LI Sbjct: 550 --SLKQTHTKEEWIQLQKLI 567 >gi|172056868|ref|YP_001813328.1| DNA primase [Exiguobacterium sibiricum 255-15] gi|171989389|gb|ACB60311.1| DNA primase [Exiguobacterium sibiricum 255-15] Length = 597 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 151/634 (23%), Positives = 273/634 (43%), Gaps = 47/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + + I LI + V+ ++ Y CPFH EK+PSF + KG Sbjct: 3 RLPDELVDQVRQATDIVELISERVELKKQGN-----RYSGLCPFHSEKSPSFSVSPDKGM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 YYCF C G+ ++F+ G SF E+V +LA + LP + + ++ + + Sbjct: 58 YYCFGCGAGGNAITFVMETEGMSFPEAVVKLADRTDIKLPEFERSDQTESTPDQEKKYRM 117 Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + D +H L+ A YL++RGI A+ FKLGYAPD + L ++ Sbjct: 118 REAHRIVADLYHEVMLQTAAGDAGREYLEQRGIQESAMREFKLGYAPDQDRFTVDSLARR 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F ++++EAGL I DRF R++FPI G ++ F GR++ + KY+N+ Sbjct: 178 NFDLDEMVEAGL-ISIGRDGDYRDRFNGRVVFPISDRDGTIVGFSGRSIDGRDP-KYVNT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 ET LF+K + L+ F A ++K + ++LVEG +DV+ + QAG+ V+ Sbjct: 236 AETPLFNKSELLFGFAQARGAMRK----------NKQVVLVEGNLDVVRVAQAGIPYTVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTALT + L ++ +++C+DGD G A KA+ L + + L G Sbjct: 286 SLGTALTPVHAQNLGRIVDEVIVCYDGDKAGRAATLKALRL---LEDVAVDCSVIRLPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 EDPDSFI + F ++I + + ++ + ++ ER + I Sbjct: 343 EDPDSFIGAQSEETFLRVIEQERISSLEFKSFYFRQGKNLRLEGERVRYIETMLEEIGRT 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + LR Y + + + +++ K + R Q+ + +S + + Sbjct: 403 SNPLLRDIYLGKLAEEFHLSKESLLSQVKPLQLQQAKPKQERRQETQ----VVTSSPQDR 458 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL +I + E +L + +++ Q + L+ + P+ Sbjct: 459 TFSNWKRAERFLLAYMIRSEEVGLEVRDQLG-VAFNDPAHQLIAGKLYEFYGTNTPADPD 517 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + ++ L+ + E + D+ Y +A+ ++ R L +K Sbjct: 518 RFLTMLHDASLQRIVADLE--------FMLMPEYDP-DLLSHYIRAVQNERQRRTLDEEK 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ +Q + A L+ + E ++ Sbjct: 569 SQLSQQ-------TDIRAQAELMQAIIERKRRLK 595 >gi|15677389|ref|NP_274544.1| DNA primase [Neisseria meningitidis MC58] gi|9910821|sp|P57029|PRIM_NEIMB RecName: Full=DNA primase gi|7226782|gb|AAF41892.1| DNA primase [Neisseria meningitidis MC58] gi|316985996|gb|EFV64933.1| DNA primase [Neisseria meningitidis H44/76] gi|325140675|gb|EGC63191.1| DNA primase [Neisseria meningitidis CU385] gi|325199862|gb|ADY95317.1| DNA primase [Neisseria meningitidis H44/76] Length = 590 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 180/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLTQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|297207719|ref|ZP_06924154.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|296887736|gb|EFH26634.1| DNA primase [Staphylococcus aureus subsp. aureus ATCC 51811] Length = 605 Score = 356 bits (914), Expect = 6e-96, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E D+ G + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|261392219|emb|CAX49734.1| DNA primase [Neisseria meningitidis 8013] Length = 590 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 182/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + S Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 ++ + + + E + ++ + ++++E + + + G ++ L K + L + Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|325136571|gb|EGC59172.1| DNA primase [Neisseria meningitidis M0579] Length = 590 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 181/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 ++ + + + E + ++ + ++++E + + + G ++ L K + L + Sbjct: 507 QVLEHMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|223044374|ref|ZP_03614408.1| DNA primase [Staphylococcus capitis SK14] gi|222442243|gb|EEE48354.1| DNA primase [Staphylococcus capitis SK14] Length = 594 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 268/632 (42%), Gaps = 43/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117 +CF C G+ F + F+E+V+ L + + V + ++ + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDIPFVEAVKELGERVNIKVDVGQTQYNQQSQMASDDLKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL +RG I+ ++GYAPDS + + L +K Sbjct: 116 IEMHELIQDYYHYALMKTVEGEEALNYLRQRGFTDELIKQRQIGYAPDSSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT + KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YNNQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A ++ + I+L+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRLLYNLDKARKSIR----------QNDEIVLLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ I L FDGD G A K L G V + L G Sbjct: 285 SMGTQLSQEHMTFLKKLTNNITLMFDGDYAGREATLKTGQ---ALLQQGLNVYVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + + + ++ N + I ++ Sbjct: 342 MDPDEYIGKYGNEAFLNFVAKDKKAFVLFKVESHQDEINNNDLAYERHFREATHDIAQVQ 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR Q + + + E A + +L Sbjct: 402 STILRNKLIQDVANIFNMSPEMIYHEVGSNNMPQVAPAEYGYSPQSGSQLF-------NN 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E ALL + YQ+++D + N + +++ L F E + + Sbjct: 455 LTKHEKAERALLKHFMKDKDTFINYYQKISDEDFTNKYFKSIFNILHDYFSEHDNYSISD 514 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E +L++ + + + + Y + E Sbjct: 515 VMQYIDSNELREAFIELEQYTLN--------DEPYENEIEDYILIINNND-----DESIE 561 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ + + G+ E + ++ + + Sbjct: 562 SLNHKLREASRIGDVELQKYYLQLIVDKNKNR 593 >gi|239998769|ref|ZP_04718693.1| DNA primase [Neisseria gonorrhoeae 35/02] gi|240080941|ref|ZP_04725484.1| DNA primase [Neisseria gonorrhoeae FA19] gi|240115444|ref|ZP_04729506.1| DNA primase [Neisseria gonorrhoeae PID18] gi|240123294|ref|ZP_04736250.1| DNA primase [Neisseria gonorrhoeae PID332] gi|240125544|ref|ZP_04738430.1| DNA primase [Neisseria gonorrhoeae SK-92-679] gi|317164061|gb|ADV07602.1| DNA primase [Neisseria gonorrhoeae TCDC-NG08107] Length = 620 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I +I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 32 IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 87 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 147 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 537 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 597 KSLQSGLN 604 >gi|110834923|ref|YP_693782.1| DNA primase [Alcanivorax borkumensis SK2] gi|110648034|emb|CAL17510.1| DNA primase [Alcanivorax borkumensis SK2] Length = 652 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 177/684 (25%), Positives = 283/684 (41%), Gaps = 92/684 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +F++DLL + LI V + N Y ACCPFH EKTPSF K F Sbjct: 3 RIPENFVQDLLARTDLVELIDARVPLKKTGRN-----YSACCPFHQEKTPSFTVAPDKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLI 118 YYCF C G+ FL +F E+V++LA AG+ +P P+ +K+ L Sbjct: 58 YYCFGCGASGNAAGFLMEYEHLNFPEAVKQLADRAGMEVPESRPETTADRQKKDRLQSLY 117 Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ A F+ L+ ++ YL RG+ + F +G+AP +L L Sbjct: 118 DLLSRAEKFYVQQLRQAPERQKAVNYLKNRGLSGEIAKQFAIGFAPPGYDNLINGLSLTE 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E+ + GLL+ +++ +YD+FR+R+IFPIR SRG+ I FGGR L KYLNSP Sbjct: 178 TSLEQAVTGGLLVRREDNNRTYDKFRDRIIFPIRDSRGRTIGFGGRVL-GDGKPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY + +S R + +VEGYMDV++L Q GV NVV++ Sbjct: 237 ETPVFHKGQELYGLWEWRQSRDRSDR----------LYVVEGYMDVIALTQHGVPNVVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA TE R L++ ++LCFDGD G+RAA++A++ +L L G +V F+ L GE Sbjct: 287 LGTATTEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD+ +R G A L ++ L L++ +E T D R L ++ Sbjct: 347 DPDTLVRQQGPEALRALTDKADALSTYLFRHLSEGLDLETVDGRVRLARLALPYLDKPAG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT------------------------------------ 441 R ++ + + + I Sbjct: 407 PVYRALLTEELSRLTRLDKESLIQLKPAPAAPRPTPSTSSPAGNAYDYGHGYEDFGSPPP 466 Query: 442 -----------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 E + + + R+ + G +L E +L Sbjct: 467 PTEDDPGIPYPEDFAFADGGNNGSSNNFTADNRNRIRPNPRQNGGRKGPLTLAERLVL-V 525 Query: 491 LINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L+++P+++++ + + + + L + + + E+G E Sbjct: 526 LLDYPSLVEQHPLPDNIEQLPLPHID---LLTQVAGLCRQNHSAAALLGALMALEQG--E 580 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L +L + S + + AL+ + +E + +V Sbjct: 581 TLSRLLKA-------SLKPPMEEEMATRLWLDALS--------QLEVTRLEAALTEVEQA 625 Query: 609 GEAEKT--AILISILHEVHIQIHQ 630 G + L L E + Sbjct: 626 GMPDPAHWQALHKALAEARQHARK 649 >gi|94499954|ref|ZP_01306489.1| DNA primase [Oceanobacter sp. RED65] gi|94427812|gb|EAT12787.1| DNA primase [Oceanobacter sp. RED65] Length = 661 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 170/659 (25%), Positives = 285/659 (43%), Gaps = 49/659 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++ + + N ACCPFH+EKTPSF + K FY Sbjct: 5 IPQSFIDDLLHRVNIVDVVDSRIKLKKAGKNHS-----ACCPFHNEKTPSFTVSSDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C KG+ + F+ F ++V+ LA G+ +P P+ KK++ +T+L L Sbjct: 60 YCFGCGAKGNAVGFVMEYDNVDFPQAVEMLADSVGMEVPREEVSPQQAKKQEERTNLYEL 119 Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ L+ K+ YL RG+ A + F +G+AP +L++ L S Sbjct: 120 MGSANEFYQRQLRYHDAKQAAVDYLKNRGLSGKAAKFFNIGFAPPGWQNLQDSLANDDES 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ AGL I D YDRFRNR+IFPIR RG+ I FG RTL + KYLNSPET Sbjct: 180 LAAMVTAGLTIKNDQG-RHYDRFRNRIIFPIRDVRGRTIGFGARTL-GDDKPKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+KG+ LY + Q R ++VEGYMDV++L + G+ V++LG Sbjct: 238 PIFNKGQELYGLYECRQIRQPLKR----------FLIVEGYMDVVALHEFGIHYAVATLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA ++ L+ L+K++P IV CFDGD+ G RAA + ++LVL + G ++ F+ L GEDP Sbjct: 288 TATSDTHLQKLFKIAPEIVFCFDGDEAGRRAAKRGLELVLPIIEDGQQIRFMFLPEGEDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-DERAELEIHLKNCINHIKDQ 418 DS +R GK FE + ++ L + L + ++ + RA L I +I Sbjct: 348 DSLVRKEGKDGFELRMQDADGLSEFLLQTLKDDIDDPASLEGRARLAKLAAPLIKNIPGI 407 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------- 465 LR + Q +++ + + A + + + Sbjct: 408 ALRSLFWQDLKEHTHIDVDELKQLAESEAKPELAPAPNPMVQSSAASHHHEHYESSYSSY 467 Query: 466 ------LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + + + + L++ P L+ + Q L Sbjct: 468 DEEMGESREQPIQSTTSGSQEPRLIRQAIAILLHAPQALETFGDTGFLQEFQGPNTQ-LL 526 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + + L + E +Q + E ++ + Sbjct: 527 QQMITALRQSPRQDLLGVLSLLNKEVDAEAYRQFKELAE----YHNKQEGHLSQQQVAMD 582 Query: 580 QALALYKR-FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQIESQEA 636 + L + + + + + Q + E + L + + + Q + +A Sbjct: 583 CLVQLRLKAAKNIKARMIKKAAQFGGMRQLPEQD--MQLYQWAAAIVELDLLQAKLTKA 639 >gi|160935058|ref|ZP_02082444.1| hypothetical protein CLOLEP_03934 [Clostridium leptum DSM 753] gi|156866511|gb|EDO59883.1| hypothetical protein CLOLEP_03934 [Clostridium leptum DSM 753] Length = 597 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 162/607 (26%), Positives = 277/607 (45%), Gaps = 29/607 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P F+++L I +++ YV+ R CPFH EKTPSFH N +G Sbjct: 8 MRLPDSFLQELKDRNNILDVVSGYVNLKRSGR-----TMSGLCPFHGEKTPSFHVNAEQG 62 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +++CF C GD ++F+ + +I++V+ LA AG+ LP D + E I+ + Sbjct: 63 YFHCFGCGAGGDVITFIRKIENLDYIDAVKFLAQRAGMELPE-DGRDEAAAHIRGRIYEA 121 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + K YL RG+ I+ F LGY+P+SRY+L LR GF + Sbjct: 122 NREAARFFHRCLYSEEGKNALAYLRGRGLTERTIKHFGLGYSPNSRYALVRQLRSLGFRD 181 Query: 181 EKIIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+II A L G + + DRF +R++FPI RG VI FGGR + + KYLN+ +T Sbjct: 182 EEIIRANLGFQGRYGSKGALDRFADRVMFPIIDLRGNVIGFGGR-IMTDQKPKYLNTSDT 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A N +IL EGYMDV++L QAG V++LG Sbjct: 241 MVFNKSQNLYALNFAKNA------------GEKRLILAEGYMDVIALHQAGFPTAVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q RL+ + + V+C+D D G +A +AI + G V + ++ G+DP Sbjct: 289 TSLTTEQARLIARYAQEAVICYDSDGAGQKATARAIPM---LREAGLLVRVLTVTGGKDP 345 Query: 360 DSFIRCY---GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 D FIR + G F++L+ S V+ ++ + PD + + + + Sbjct: 346 DEFIRSHGDQGPARFKQLLEASGNDVEYRLQKAANGLDLSQPDGKIAYLTACVSILATLD 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLVK 473 + + Y+ I ++ + + R +++ R+ + + + + Sbjct: 406 SKIEQEVYAGRIAAEVEIEKSSVMAQVEKQMRKRRRDQSVQEFREIQKATSGFGDAVNPQ 465 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + + E AL +IN+P + + + + + ++++ + E + Sbjct: 466 KSQNLRAANAEEALTAYVINNPDMANNIEKWIRPDDFVTDFNRRVYETVTGRIRENRPVS 525 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P ++ Q E+ + L + A + + ++ L R Sbjct: 526 PTDLTQDFSEQEMSRIAGMLYKASVGGETLEAAKDYCKIIKQEKSSAKLREPLEDDEAKR 585 Query: 594 QKEEIEK 600 EEI+K Sbjct: 586 LFEEIQK 592 >gi|21283243|ref|NP_646331.1| DNA primase [Staphylococcus aureus subsp. aureus MW2] gi|300911800|ref|ZP_07129243.1| DNA primase [Staphylococcus aureus subsp. aureus TCH70] gi|38605351|sp|Q8NWB7|PRIM_STAAW RecName: Full=DNA primase gi|21204683|dbj|BAB95379.1| DNA primase [Staphylococcus aureus subsp. aureus MW2] gi|300886046|gb|EFK81248.1| DNA primase [Staphylococcus aureus subsp. aureus TCH70] Length = 605 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNVQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L++K Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTLNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E D+ G + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|240014314|ref|ZP_04721227.1| DNA primase [Neisseria gonorrhoeae DGI18] gi|240016749|ref|ZP_04723289.1| DNA primase [Neisseria gonorrhoeae FA6140] gi|240117740|ref|ZP_04731802.1| DNA primase [Neisseria gonorrhoeae PID1] gi|240121877|ref|ZP_04734839.1| DNA primase [Neisseria gonorrhoeae PID24-1] Length = 620 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I +I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 32 IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 87 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 147 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 537 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 597 KSLQSGLN 604 >gi|296314330|ref|ZP_06864271.1| DNA primase [Neisseria polysaccharea ATCC 43768] gi|296838969|gb|EFH22907.1| DNA primase [Neisseria polysaccharea ATCC 43768] Length = 590 Score = 356 bits (913), Expect = 7e-96, Method: Composition-based stats. Identities = 182/601 (30%), Positives = 284/601 (47%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ L+ + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLRFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ +++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + + S K Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQEAPKQHVKQKSYKLPPIS----------VK 449 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 450 QPVMPTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKSHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 +I + + + E + ++ R V + E + + + G ++ L K + L + Sbjct: 507 QILEHMRGSPYEETINRIFRSVLQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|240948936|ref|ZP_04753292.1| DNA primase [Actinobacillus minor NM305] gi|240296751|gb|EER47362.1| DNA primase [Actinobacillus minor NM305] Length = 581 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 176/614 (28%), Positives = 288/614 (46%), Gaps = 55/614 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + +Y ACCPFH EKTPSF + S Sbjct: 1 MKGTIPRSFIDDLIARTDIVELINHRVKLKKAGR-----EYHACCPFHHEKTPSFSVSPS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------K 112 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P + + K Sbjct: 56 KQFYHCFGCGAHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENLRQSDSRSPQVSYK 115 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + DL L+ T F+ +L+ + YL +RG+ I F++G+AP++ ++ Sbjct: 116 AKRDLYGLLSEITQFYQQNLQQDIPSQS--YLQQRGLSPEIIARFEIGFAPNAYDAVLRK 173 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + +K+ + G+L + S YD+FRNR++FPIR RG+VIAFGGR + E K Sbjct: 174 FGKNPEEVQKLRDTGMLSES-ESGRIYDKFRNRIMFPIRDKRGRVIAFGGRVM-GDERPK 231 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE+ +HKG LY + AL + ++ +VEGYMDV++L Q GV+ Sbjct: 232 YLNSPESATYHKGNELYGLYQALQ----------VDENPQYLFVVEGYMDVVALAQFGVE 281 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V+SLGTA T Q++ +++++ +I+ C+DGD G AA++A + L +L G ++ F+ Sbjct: 282 NAVASLGTATTGEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIF 341 Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L GEDPD+F+R GK+ FE L + L D L+ ++ + +++L Sbjct: 342 LPDGEDPDTFVRSQGKSGFEHYLQENAKSLSDFLFDSLLVQVDLSSKEGKSKLASLAIPL 401 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IN I + LR Y + +L L + K++ + Sbjct: 402 INRIPGEMLRVYLRNILGQKLGILDPSQLEALLPNRLQVKQDTPKAQGIKRTPM------ 455 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 L+ L+ +P +++ L+ ++ + L+ L EQ Sbjct: 456 -------------RLLIALLLQNPDLVKHVPD-LSPLKELDEAGFDLFVELVQVCREQVG 501 Query: 532 FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALY 585 + + + +L++L D V D L E + + + L Sbjct: 502 VSMGALLEHWRDTPNYTILERLAGWDHLVSDENLEKEFIETLSFLYTKLVEKRVEVLIAK 561 Query: 586 KRFRLLS-RQKEEI 598 +R + LS +K+E+ Sbjct: 562 ERTKGLSDEEKQEL 575 >gi|319792618|ref|YP_004154258.1| DNA primase [Variovorax paradoxus EPS] gi|315595081|gb|ADU36147.1| DNA primase [Variovorax paradoxus EPS] Length = 663 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 176/687 (25%), Positives = 286/687 (41%), Gaps = 75/687 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P FI++L+ + ++G+YV + N + CPFH EK+PSF + +K Sbjct: 1 MTIPASFIQELIARADVVEIVGRYVPLKKAGAN-----FMGLCPFHGEKSPSFSVSPTKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK------EKIQ 114 FY+CF C V G+ + FL G F+E+V LA G+ +P D ++ + Q Sbjct: 56 FYHCFGCGVHGNAIGFLMEHAGMGFVEAVHDLAGQYGLQVPEDDASPAERARAASQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A D + SL+ A YL RG+ + F +GYAP +L Sbjct: 116 ATLTDVLEKAGDAYRKSLRQAPGA--IEYLKGRGVSGEVAKQFGIGYAPAGWRALASVFP 173 Query: 175 QKGF-----SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 S I+ + A YDRFR+R++FPIR+ +G+ I FGGR L E Sbjct: 174 DYDDPLLAESGLVIVNTEDGQLEASEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDE 232 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET +F KG+ LY + A + + ++ EGYMDV++L Q Sbjct: 233 KPKYLNSPETPVFSKGRELYGLYEARAAFR----------DRGYALVTEGYMDVVALAQL 282 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G N V++LGTA T ++ L++ + +V FDGD G RAA KA+D L + + Sbjct: 283 GFPNAVATLGTACTTEHVQKLFRFTESVVFSFDGDAAGRRAARKALDGALPYATDVRSIK 342 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ L DPDSFIR +G AF + + E+ PL + + E T + RA + +++ Sbjct: 343 FLFLPAEHDPDSFIREHGAEAFARFVAEATPLSRFMLEAAREGCDLTTAEGRAHMTSNVR 402 Query: 410 NCINHIKDQKLRYYYSQAIR--------------------DRLQQLFQKYITEHSGYG-- 447 + + D L+ I ++ +E SG G Sbjct: 403 PLWSAMPDGALKRQLLSEIATLVQLDAAALSDLWASTPGPRKVAAPPSPRYSESSGDGGD 462 Query: 448 ------------------RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +K + + G + ++ +GK +P + LL Sbjct: 463 YPDMPPPMEFEAPRYETDSKPRKFVKGKRWGGKFEEPIEPLRGRGKPPSRPDVAVRLLLS 522 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + A+ E + L D+ L+++L S E + + + F L Sbjct: 523 NMAQWDALSHELHLMLCDLP---GTHGALFTWLDSQLHEHGVQPWAALREGMRGLDFEAL 579 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 ++L + E ++ D + L R L Q+ E + + Sbjct: 580 AERLMNVADAVPVPEGEEEQHLADAAKELSSVLDFMLDDR-LKAQQSEAIAAVGKDPKAL 638 Query: 610 EAEKTAILISILHEVHIQIHQIESQEA 636 E+ L + E+ ++ S+ A Sbjct: 639 --ERYKALEARRLELRNRLSPRGSETA 663 >gi|331698220|ref|YP_004334459.1| DNA primase [Pseudonocardia dioxanivorans CB1190] gi|326952909|gb|AEA26606.1| DNA primase [Pseudonocardia dioxanivorans CB1190] Length = 634 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 144/647 (22%), Positives = 246/647 (38%), Gaps = 42/647 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ I +IG+YV R G CPFHDEKTPSF+ + G Sbjct: 6 RIRDSDIAEVRDRARIDEVIGEYVALRRAGA----GSLKGLCPFHDEKTPSFNVRPTHGT 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C G + F+ + F+E+V+RLA GV L + +T L+ Sbjct: 62 FHCFGCGEGGSVIDFVMKIEVVGFVEAVERLAEKVGVRLNYEGGGSSVQRDRGTRTRLLE 121 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L+ +L RG DS A F GYAP L +HL GF Sbjct: 122 ANRRAAEFYAEQLRTPEAAPALQFLTARGFDSAAAATFGCGYAPAGWDLLTKHLLAAGFG 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSP 237 +++++AGL + DRF RL++PIR G V+ FG R L + KYLN+ Sbjct: 182 LDELMKAGLSKE--GRRGPIDRFHRRLLWPIRDLGGDVVGFGARRLFDDDGIEAKYLNTT 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K L+ A + + +++VEGY DV+++ AGV V+S Sbjct: 240 ETPVYRKTHVLFGLDLAKREIAR----------RRQVVVVEGYTDVMAMHLAGVPTAVAS 289 Query: 298 LGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + ++ + ++ FDGD G AA KA + + Sbjct: 290 CGTAFGAEHVSVIRRLIGDDSFDLGEVIYTFDGDAAGQAAALKAFEGDQSFAA---QTFV 346 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G+DP + G TA L+ PL + + +T + R Sbjct: 347 SIAPDGQDPCELRQSGGDTAVRDLVARREPLFEFAIRSMLREHDLDTAEGRVAALQRCVP 406 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + I+ + LR Y++ + + + R ++ A + +R Sbjct: 407 LVARIRREDLRDEYARRLAGW------TSWDDIAMVVRRVRETAGAPAEPVRGRRSAPPV 460 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + L + + + PAI Y EL + + + + + + Sbjct: 461 GAPPKDDPRLHL-QREAVKAALQEPAIAGPAYDELPEAAFSHPAFAGVHRAIAAAGGVCA 519 Query: 531 YFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSAT--TEANIVDVRQGYQQALALY 585 + + F L+ +L + +A + N + Y ++ Sbjct: 520 GLSGPAWIEAVGAECAPEFRGLVHELAVEPMQLPRKTARASSNGNGLTDEARYVASVVAG 579 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 R L+ Q E++ ++ + EA+ L L + + Sbjct: 580 VRLALVEAQIAELKARLQRTNPVEEADAYHQLFGDLVPLEQYRIALR 626 >gi|253681663|ref|ZP_04862460.1| DNA primase [Clostridium botulinum D str. 1873] gi|253561375|gb|EES90827.1| DNA primase [Clostridium botulinum D str. 1873] Length = 595 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 167/633 (26%), Positives = 288/633 (45%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I ++I + V R + CPFH+EKTPSF ++ K Y Sbjct: 2 ISEEIIEKIKEQNNIVDVISESVKLKRTGR-----SFIGLCPFHNEKTPSFSVSEDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ +F+ SFIE+V+ L + + D K + + L ++ Sbjct: 57 KCFGCGEAGNVFTFVMKSRNLSFIEAVKYLGDKVNIHIEDNDEKNKVHKNKNDKLYKINV 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A ++ +L+ + K + Y +RGI + + F LGYAP +++ ++KG++E Sbjct: 117 EAARYYFKNLQTS--KEANDYFKKRGILNKTLRRFGLGYAPSGWHNIINFFKKKGYTELD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G + + YDRFRNR+IFP+ +G+VI FGGR L KYLNSPET +F Sbjct: 175 LLNAGLIIKG-KNNSLYDRFRNRVIFPVFDYKGRVIGFGGRVL-DDSKPKYLNSPETDIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + II+VEGYMD +SL Q G+ NVV+SLGTAL Sbjct: 233 KKGTNLYGLNFAIKDNNR------------TIIIVEGYMDCISLYQYGITNVVASLGTAL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + +I++ +D D G A + + + G + + + G+DPD F Sbjct: 281 TYDQAKLLKRYADKIIVSYDADFAGQNATMRGLKI---LKKQGFDLKVLDIPDGKDPDEF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +GK AF KLI E+LPLVD K + E + IN + + + Sbjct: 338 IKNHGKVAFMKLIDEALPLVDYEIKMAKYGLDITNEEMLMEYVNNACKIINKL-NPIEKD 396 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + +Y+ ++ + + Q+L + Sbjct: 397 IYIRKLSQETRLKEQAIYDLLNTNNKYYHESQKRYIKDNFGQKLY--------IEPAYMK 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ + ++ + +++ + N +K+++ + + E E I + + Sbjct: 449 TQRNLIKIMTSNIDNYRYIIDIVSEEDFIVNSHKKIFNLIKEEVDENID-NLENISKYIE 507 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ + + +I +G A + L KEEI K+I Sbjct: 508 IKC-----DDIESSKEWIKIQQVQLDHDIDY--KGLVDAYIKEIKKFKLEESKEEIMKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 A+G E++ L+ L + I + + E Sbjct: 561 KYYEAQGLFEESLNLVKELEIIQNNIMAMNNCE 593 >gi|325144807|gb|EGC67097.1| DNA primase [Neisseria meningitidis M01-240013] Length = 590 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 181/601 (30%), Positives = 289/601 (48%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + +++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEVGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 ++ + + + E + ++ + ++++E + + + G ++ L K + L + Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|160874341|ref|YP_001553657.1| DNA primase [Shewanella baltica OS195] gi|304409307|ref|ZP_07390927.1| DNA primase [Shewanella baltica OS183] gi|307303665|ref|ZP_07583418.1| DNA primase [Shewanella baltica BA175] gi|160859863|gb|ABX48397.1| DNA primase [Shewanella baltica OS195] gi|304351825|gb|EFM16223.1| DNA primase [Shewanella baltica OS183] gi|306912563|gb|EFN42986.1| DNA primase [Shewanella baltica BA175] gi|315266576|gb|ADT93429.1| DNA primase [Shewanella baltica OS678] Length = 574 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 180/620 (29%), Positives = 296/620 (47%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE L+V ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K ++ KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A ++ L L EQ ++ Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ E + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + + LI Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567 >gi|21233248|ref|NP_639165.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770190|ref|YP_244952.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004] gi|188993401|ref|YP_001905411.1| DNA primase [Xanthomonas campestris pv. campestris str. B100] gi|21115082|gb|AAM43056.1| DNA primase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575522|gb|AAY50932.1| DNA primase [Xanthomonas campestris pv. campestris str. 8004] gi|167735161|emb|CAP53373.1| DNA primase [Xanthomonas campestris pv. campestris] Length = 582 Score = 356 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 170/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGSD--RARDYLDGRGVDAENRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF+ + ++ PL + + + +T D +A L K + I Sbjct: 345 GEDPDTIVRKEGAQAFDARLKQATPLSQFFFDEMARDINLHTLDGKARLAERAKPMLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + + R + SLV+ Sbjct: 405 PEGAFGDLMKQELARMTG---------VGASMSAQQSPPKARPPARMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + ++ L L + ++ Sbjct: 456 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIELLME-LLALVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAEREELVALQKLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDNTDKYEMRELLKALAAL 582 >gi|325205716|gb|ADZ01169.1| DNA primase [Neisseria meningitidis M04-240196] Length = 590 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 LYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TASALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|194098358|ref|YP_002001416.1| DNA primase [Neisseria gonorrhoeae NCCP11945] gi|193933648|gb|ACF29472.1| DNA primase [Neisseria gonorrhoeae NCCP11945] Length = 620 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 182/608 (29%), Positives = 292/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I +I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 32 IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 86 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 87 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 146 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L VA DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 147 LEETTAVAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 202 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 203 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 259 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 260 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 309 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 310 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 369 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 370 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 429 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 430 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 483 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 484 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 536 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 537 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 596 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 597 KSLQSGLN 604 >gi|237809410|ref|YP_002893850.1| DNA primase [Tolumonas auensis DSM 9187] gi|237501671|gb|ACQ94264.1| DNA primase [Tolumonas auensis DSM 9187] Length = 582 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 180/611 (29%), Positives = 289/611 (47%), Gaps = 38/611 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL I LI V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 KIPQSFIDDLLNRTDIVELIDSRVHLKKAGKN-----YQACCPFHNEKSPSFSVSPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G+ + F+ G +F ++V LA + G+ +P P + D +L+ Sbjct: 59 YHCFGCGAHGNAIGFMMEYDGLNFPDAVGELANLHGLTVPNDQPFHSQGPAPSADHYQLM 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E AT +F + LK + YL RG+ ++ F +GYAP LR+ L + +E Sbjct: 119 EWATRYFQNQLKT--APQAIDYLKGRGLTGEIVKQFAIGYAPGGWDGLRQTLVRSAATEA 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++IE G+LI G + SYDRFR+R++FPIR RG+VI FGGR L + KYLNSPET + Sbjct: 177 QLIELGMLI-GRDGGGSYDRFRDRIMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPETPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKGK L+ + + R I++VEGYMDV++L Q GV V+SLGT+ Sbjct: 235 FHKGKELFGLYQVKERHRTPAR----------ILIVEGYMDVVALAQFGVDYAVASLGTS 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T + LL++ + +V C+DGD+ G AA++A++ L L G + FV L + DPDS Sbjct: 285 TTADHMHLLFRTTSEVVCCYDGDNAGREAAWRALENALPGLQDGKDLRFVFLPQEHDPDS 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 FIR YG+ AFE+ + ++ D L++R T + + + + EL I + + R Sbjct: 345 FIREYGRGAFEQKLDDAQSYADFLFERLTRDLNLSGEAGQNELANKAIALIRRVPEGFNR 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + +L+ + + R ++ + S ++ + + + Sbjct: 405 ESLLTKLSVQLRWG-ENEKRLREIFHRQEQEAQQTATTHKNSGKIKLTLIRRAIALIVQH 463 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 ++AALL +L P +L+ + ++ L S L ++ + Sbjct: 464 PQQAALLPSL---PDVLKSLKE---------PGIEVLLSLLTQL--HNNPMSTGQLLEHW 509 Query: 542 CERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEE 597 + G L Q LD + + + QQ L + +S +K+E Sbjct: 510 RDTREGRALAQLAMLDEVAVGDNIQQELEDVCDRLLDLYLQQRLDSLLQKNQMSLEEKQE 569 Query: 598 IEKQIAQVTAK 608 ++ + + Sbjct: 570 LQFLLTEYKRS 580 >gi|217974325|ref|YP_002359076.1| DNA primase [Shewanella baltica OS223] gi|217499460|gb|ACK47653.1| DNA primase [Shewanella baltica OS223] Length = 574 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 180/620 (29%), Positives = 297/620 (47%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE L+V ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ +++ +L + + + G+ K ++ KG L Sbjct: 400 VLQNLLLESLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A ++ L L EQ ++ Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ E + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + + LI Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567 >gi|325142723|gb|EGC65101.1| DNA primase [Neisseria meningitidis 961-5945] gi|325198657|gb|ADY94113.1| DNA primase [Neisseria meningitidis G2136] Length = 590 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 180/608 (29%), Positives = 295/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVDYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ + ++++E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|241760553|ref|ZP_04758646.1| DNA primase [Neisseria flavescens SK114] gi|241319057|gb|EER55559.1| DNA primase [Neisseria flavescens SK114] Length = 590 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 187/629 (29%), Positives = 296/629 (47%), Gaps = 48/629 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGKHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS IR YGKT FE L+ +S PL + W+ ++ + NT + +AEL + I Sbjct: 340 HDPDSHIRAYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q +++ Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN PA +L D + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + Q+ + E + + G ++ L K Q Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQI 561 Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623 E ++++ I + E L++ Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590 >gi|91794184|ref|YP_563835.1| DNA primase [Shewanella denitrificans OS217] gi|91716186|gb|ABE56112.1| DNA primase [Shewanella denitrificans OS217] Length = 574 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 181/626 (28%), Positives = 294/626 (46%), Gaps = 55/626 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C V G+ + F+ F+++++ LA G+ +P + ++ + DL + Sbjct: 56 FYHCFGCGVHGNAIDFIMEYDRLEFVDAIEELAGQLGLAVPQEQGTGNRVDQGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A F+ L+ DK+ YL RG+ IE F +G+APD L RQ Sbjct: 116 LMEEAKLFYQSQLRQHADKQKVIDYLAMRGLSEDVIEHFGIGFAPDGWDGLLSRYRQHPQ 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++K++ AG+LI ++S YDRFR+RL+FPIR RG+V+ FGGR L +G + KYLNSPE Sbjct: 176 SQDKLLTAGMLI-ANDSGKRYDRFRDRLMFPIRDRRGRVVGFGGRVLGEG-TPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------EQVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ + +GED Sbjct: 284 GTSTTAEQFQLLVRSAKEVICCYDGDRAGREAAWRALETALPLLKPGDKVRFMFVPQGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE+ + ++L L + L+ N + D L I ++D Sbjct: 344 PDSMVRKVGKDAFEQAMKQALSLPEFLFDTLASNYGTDKGD----LAKQAIGLIEKVQDS 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ + + +G L Sbjct: 400 VLQNLLLENLAHKLGMNSADDLKKKFGFTVKQSQTVNSKGLQGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + L L E Sbjct: 448 ------RLAIALLVQHPDLGLSLA--------PQPALAHLQLAGIELLNHLLTVTRE--- 490 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++L EL ++ ++ L + ++ Q ++Q+L + + + ++ +E+ Sbjct: 491 EKLNSAQLLELHREHPQKATLIKLAQWDHQVADDNLIQEFRQSLI-WLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + Q K E + LISI+ + Sbjct: 550 --SLKQTLTKAEKVQLQKLISIMKGL 573 >gi|254519857|ref|ZP_05131913.1| DNA primase [Clostridium sp. 7_2_43FAA] gi|226913606|gb|EEH98807.1| DNA primase [Clostridium sp. 7_2_43FAA] Length = 592 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 165/631 (26%), Positives = 284/631 (45%), Gaps = 43/631 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ + I ++I + V R N + CPFH+EK+PSF + K Sbjct: 1 MQISEEILEKVKEQNDIVDVISESVRLKRSGRN-----FSGLCPFHNEKSPSFSVSQDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C G+ ++F+ F+E+V+ LA + + +I K + L ++ Sbjct: 56 IYKCFGCGESGNVITFVMKNKNMPFVEAVKYLADRVNITIESDKGRISPTAKKRELLYKV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF+ +L+ K Y RGI I+ F LG+A DS +L HLR+ GF + Sbjct: 116 NVEAARFFYSNLRLT--KEAKEYFLNRGIKEETIKRFGLGFAKDSWNNLLFHLRKLGFKD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL+ + + YDRFRNR+IFP+ RG+VI FGGR L KYLNSPET+ Sbjct: 174 DLLLEAGLVSTSERTGNKYDRFRNRVIFPVFDYRGKVIGFGGRVL-DDSKPKYLNSPETL 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NLY A+ + + I+VEGYMD+++L Q G+ NVV+SLGT Sbjct: 233 VFQKGTNLYGLNFAIKS----------KMQERYFIIVEGYMDLITLHQYGITNVVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q RLL + + ++++ +D D G A + +D+ G V + + +G+DPD Sbjct: 283 ALTTNQARLLRRYADKVIISYDADIAGQAATMRGLDI---LKDAGFDVRVLSIPQGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++R GK AF KLI + L+D K+ E + ++ + + + + Sbjct: 340 EYVRSNGKDAFIKLINGAESLIDYRLKKAEEGINLKDSNDLVRYGKRVTEILASV-NSIE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S K + K + + K L Sbjct: 399 KDVYIKKISENTGIREQTLYDLLSKEMTKNIKENDFMNNK-------EENGTKLYLEPAF 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L+ +N Q + E ++++S + E K I Sbjct: 452 IKAERSLMKLCLNE-EYFDYISQLINQDELILPEHKEIFSII----KEAKKGNINNIITF 506 Query: 541 LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + ++++ + L + I D + L+++ E++ Sbjct: 507 LESKCTNVKTIEEIVKIKEHHVLIGKDNKKLIQDFIKQLDN--------YKLNQKLNELK 558 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ + ++G+ E++ + L V+ Q+ + Sbjct: 559 RKQKVLESQGKIEESIQIAIELKNVNDQLKR 589 >gi|325912705|ref|ZP_08175088.1| DNA primase [Lactobacillus iners UPII 60-B] gi|329920081|ref|ZP_08276912.1| DNA primase [Lactobacillus iners SPIN 1401G] gi|325478126|gb|EGC81255.1| DNA primase [Lactobacillus iners UPII 60-B] gi|328936535|gb|EGG32979.1| DNA primase [Lactobacillus iners SPIN 1401G] Length = 600 Score = 356 bits (912), Expect = 9e-96, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N+ + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + + + L +R + + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESITLIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L S + Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|121635206|ref|YP_975451.1| DNA primase [Neisseria meningitidis FAM18] gi|120866912|emb|CAM10671.1| DNA primase [Neisseria meningitidis FAM18] gi|325132680|gb|EGC55364.1| DNA primase [Neisseria meningitidis M6190] Length = 590 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 181/601 (30%), Positives = 290/601 (48%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q ++ Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN P +L D + + L + S Sbjct: 455 -----TLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAESIKNHAAVPETA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 ++ + + + E + ++ + ++++E + + + G ++ L K + L + Sbjct: 507 QVLEYMRGSPYEETITRIFHSTHQSEEMNSSSEEDCENFQIGMKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|78049550|ref|YP_365725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037980|emb|CAJ25725.1| DNA primase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 582 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 169/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LDAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + R R + SLV+ Sbjct: 405 PEGAFGDLMKQELARLTG---------VGATASAQQSAPRLRLPARVGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAERQELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|309378740|emb|CBX22690.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 590 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 185/601 (30%), Positives = 291/601 (48%), Gaps = 44/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVHGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L ATDF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAATDFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ +++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALGYLLKQRLSELVGIDPDNLAQLLGQ--ETPKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK--RFRLLSR 593 +I + + + E + ++ R + E + + + G ++ L K + L + Sbjct: 507 QILEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIEALKQ 566 Query: 594 Q 594 + Sbjct: 567 K 567 >gi|125717670|ref|YP_001034803.1| DNA primase [Streptococcus sanguinis SK36] gi|125497587|gb|ABN44253.1| DNA primase (bacterial type), putative [Streptococcus sanguinis SK36] Length = 602 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 146/634 (23%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ A++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARDYLYQRGLTDDALKHFQIGLAPNEGNYLHKSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QYISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|312872948|ref|ZP_07733008.1| DNA primase [Lactobacillus iners LEAF 2062A-h1] gi|311091470|gb|EFQ49854.1| DNA primase [Lactobacillus iners LEAF 2062A-h1] Length = 600 Score = 356 bits (912), Expect = 1e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N+ + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + + + L +R + + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L S + Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|261344811|ref|ZP_05972455.1| DNA primase [Providencia rustigianii DSM 4541] gi|282567258|gb|EFB72793.1| DNA primase [Providencia rustigianii DSM 4541] Length = 581 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 167/623 (26%), Positives = 286/623 (45%), Gaps = 48/623 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +L+ V ++ N + ACCPFH+EKTPSF N + F Sbjct: 4 RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDRQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 YYCF C G+ + FL F+E+++ L+A+ G+ +P + + + +L + Sbjct: 59 YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGTSQIELHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ +L ++ + YL +RG+ I F +G+AP +L + S Sbjct: 119 LMEKINQFYCAALNHSSANKAKDYLSQRGLSPEIIAHFSIGFAPAGWDNLLKKFAVNPES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ EAG+L+ +++ YDRFR+R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RQQLDEAGMLV-TNDNGRVYDRFRDRVMFPIRDRRGRVIAFGGRVL-GDGVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + A + + +++VEGYMDV++L Q ++ V+SLG Sbjct: 237 DIFHKGRQLFGLYEATQNSSELAK----------LLVVEGYMDVVALAQYDIRYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQIRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK AFE+ + +L L L+ T + RA++ I I + Sbjct: 347 DSLVRKEGKDAFEQRMENALSLSTFLFDSLVPQVDLKTQEGRAKISKLAIPLIKQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y +Q + + + + + N + K + Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRENTEQINYQAPKLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+ L ++ + Sbjct: 452 -----RILIALLVQNPNFSEFVPSLEGIAHIQMPGL-SLFQELVEVCRSTPGMTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R + F + L++L D + I + + AL + + + Sbjct: 506 RYRDNKFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLI-------AK 557 Query: 600 KQIAQVTAKGEAEKTAILISILH 622 ++ ++T + E I +S + Sbjct: 558 ERTQRLTPEEREEVRLITLSRVK 580 >gi|184201289|ref|YP_001855496.1| DNA primase [Kocuria rhizophila DC2201] gi|183581519|dbj|BAG29990.1| DNA primase [Kocuria rhizophila DC2201] Length = 668 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 150/686 (21%), Positives = 260/686 (37%), Gaps = 82/686 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I ++ I ++ QYV G Y CPFHDE++PSFH G Y Sbjct: 5 IKREDIDEVRARTDIREVVEQYVTLKPAG----IGSYKGLCPFHDERSPSFHVRPQMGTY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 +CF C GD ++FL + F E+V+RLAA G L +E+ + L+ Sbjct: 61 HCFGCDESGDVIAFLMEMDHTPFTETVERLAARIGYELHYEQGGAPNREEVGRRQRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +VA +FF +L + +L ERG D A + +GYAP L HLR +GF+E Sbjct: 121 HKVAAEFFQRNLYTRQAAAAQKFLGERGFDQDAARTYGVGYAPQGWSHLLNHLRNQGFTE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 +++ G+ +G+ YDRFR RLI+PIR+ G+VI FG R L + + KYLN+PET Sbjct: 181 QELKLTGMFSEGNR--GLYDRFRGRLIWPIRAVAGEVIGFGARKLYEDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K + +++VEGY DV++ AGV V++ G Sbjct: 239 QLYKKSQVLYGIDLAKRPIAK----------TKQVVVVEGYTDVMACHLAGVATAVATCG 288 Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 TA ++++ + +V FDGD G +AA +A + + + Sbjct: 289 TAFGPEHIKIVRRFLSDDSAGGEVVFTFDGDAAGQKAALRAFQEDQRFVA---QTYVAVE 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + + + N+ + R + Sbjct: 346 PNGMDPCDLRLARGDVAVRDLVETRTPLFEFALRATIKEYDVNSLEGRLRAMRACAPIVA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---------------------- 451 I+D LR Y++ + L + + S + + Sbjct: 406 QIRDSSLRPAYARELSGWLGIETDEVMRAVSAAAKSAQRGGSGSAGSGPSGAVASSSGRS 465 Query: 452 -----------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EAALL 488 + + + + S + + + P R E L Sbjct: 466 NSGYDGARGPQQAQGPSRGGQDQRAPRATSGARDDSPEEPRSVELPDPREPVSRMEREAL 525 Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCERG 545 ++ P ++ + Q + + + + + + Sbjct: 526 EVVLQVPDLVPLPYWAHFDSAGMTYRVHQVMHDAVVGARADLGEGVQGGRVWLESVRNHL 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 L L + + A +R + ++R+K + + ++ Sbjct: 586 PEPLHGYLAQLSV-----TPLPAATEQQMRNYAVGVITSLVEMH-INREKSDKLAHLNRL 639 Query: 606 TAKGEAEKTAILISILHEVHIQIHQI 631 A+ E + L L ++ +Q + Sbjct: 640 NAQREPDLYQQLNRELLDLELQRRSL 665 >gi|126173384|ref|YP_001049533.1| DNA primase [Shewanella baltica OS155] gi|125996589|gb|ABN60664.1| DNA primase [Shewanella baltica OS155] Length = 574 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 180/620 (29%), Positives = 295/620 (47%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLHELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE L+V ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDAFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K ++ KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A ++ L L EQ ++ Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ E + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + + LI Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567 >gi|254428780|ref|ZP_05042487.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax sp. DG881] gi|196194949|gb|EDX89908.1| DNA primase catalytic core, N-terminal domain family [Alcanivorax sp. DG881] Length = 649 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 185/681 (27%), Positives = 290/681 (42%), Gaps = 89/681 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +F DLL + LI V + N Y ACCPFH EKTPSF K F Sbjct: 3 RIPENFTHDLLARTDLVELIDARVPLKKTGRN-----YSACCPFHQEKTPSFTVAPDKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLI 118 YYCF C G+ + FL SF E+V++LA+ AG+ +P P+ +K+ L Sbjct: 58 YYCFGCGASGNAVGFLMEYEHLSFPEAVKQLASRAGMEVPESRPETAADRQKKDRLQSLY 117 Query: 119 RLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ A F+ L+ ++ YL RG+ + F +G+AP +L L Sbjct: 118 DLLSRAEKFYAQQLRQAPERQKAVNYLKNRGLSGEIAKKFAIGFAPPGYDNLINGLSLTE 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E + GLL+ D++ +YD+FR+R+IFPIR SRG+ I FGGR L KYLNSP Sbjct: 178 TSLEHALTGGLLVRKDDTGRTYDKFRDRIIFPIRDSRGRTIGFGGRVL-GDGKPKYLNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG+ LY + +S R + +VEGYMDV++L Q GV NVV++ Sbjct: 237 ETPVFHKGQELYGLWEWRQSRDRSDR----------LYVVEGYMDVIALTQHGVPNVVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA TE R L++ ++LCFDGD G+RAA++A++ +L L G +V F+ L GE Sbjct: 287 LGTATTEDHARKLFRQVNEVILCFDGDKAGVRAAWRALESLLPALDDGKQVRFLFLPDGE 346 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD+ +R G A L ++ L L++ +E +T D RA L ++ Sbjct: 347 DPDTLVRQQGPEALRALTDKADTLSTYLFRHLSEGLDLDTVDGRARLARLALPFLDKPAG 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--------------- 462 R ++ + RL +L ++ + + + A K P Sbjct: 407 PVYRALLTEELS-RLTRLDKESLIQLKPAPAAPRPTAAPAPSKPPQDATAYGYENAGYPP 465 Query: 463 -----------------------------SQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 S + + + K P L+L L++ Sbjct: 466 AEDDPGMPYPEDFGFADDGNQGNAGFNGGSPNRTRPNPRQNSGRKGPLTLAERLVLVLLD 525 Query: 494 HPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 +P+++ + + + + + +L L + ++ + L GE L Sbjct: 526 YPSLIDQHPLPEGIDTLPLPHIDL--LVQV---AGLCRQSHSAAALLGALMALEQGETLS 580 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 +L + S + + AL+ + +E + +V G Sbjct: 581 RLLKA-------SLKPPMAEEMATRLWLDALS--------QLEVTRLEAALLEVEQAGMP 625 Query: 612 EKT--AILISILHEVHIQIHQ 630 + L L E + Sbjct: 626 DPAHWQALHKALAEARQHARK 646 >gi|314933734|ref|ZP_07841099.1| DNA primase [Staphylococcus caprae C87] gi|313653884|gb|EFS17641.1| DNA primase [Staphylococcus caprae C87] Length = 594 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 154/631 (24%), Positives = 265/631 (41%), Gaps = 44/631 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117 +CF C G+ F + F+E+V+ L + + V + ++ + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDVPFVEAVKELGERVNIKVDVGQTQYNQQSQMASDDLKM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ D++H++L K + YL +RG I+ ++GYAPDS + + L +K Sbjct: 116 IEMHELIQDYYHYALMKTVEGEEALNYLRQRGFTDELIKQRQIGYAPDSSHFCHDFLEKK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT + KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YNNQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K + LYN A ++ + I+L+EG+MDV+ AG++ VV+ Sbjct: 235 PETPIFQKRRLLYNLDKARKSIR----------QNDEIVLLEGFMDVIKSDYAGLKQVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT L++ + L KL+ I L FDGD G A K L G V + L G Sbjct: 285 SMGTQLSQEHMTFLKKLTNNITLMFDGDYAGREATLKTGQ---ALLQQGLNVYVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + + + ++ N + I ++ Sbjct: 342 MDPDEYIGKYGNEAFLNFVAKDKKAFVLFKVESHQDEINNNDLAYERHFREATHDIAQVQ 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR Q + + + E A + +L Sbjct: 402 STILRNKLIQDVANIFNMSPEMIYHEIGSNNMPQVAPAEYGYSPQSGSQLF-------NN 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K E ALL + YQ+++D + N + +++ L F E + + Sbjct: 455 LTKNEKAERALLKHFMKDKDTFINYYQKISDDDFTNKYFKSIFNILHDYFSEHDNYSISD 514 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + E +LD+ + + + + Y + E Sbjct: 515 VMQYIDSNELREAFIELDQYTLN--------DEPYENEIEDYILIINNND-----DESIE 561 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + ++ + G+ E L V + Sbjct: 562 SLNHKLREAYRIGDVE-LQKYYLQLIVVKNK 591 >gi|322513555|ref|ZP_08066655.1| DNA primase [Actinobacillus ureae ATCC 25976] gi|322120626|gb|EFX92520.1| DNA primase [Actinobacillus ureae ATCC 25976] Length = 580 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 176/618 (28%), Positives = 284/618 (45%), Gaps = 52/618 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + DY ACCPFH EK+PSF + S Sbjct: 1 MKGTIPRSFIDDLVARTDIVELINSRVKLKKAGR-----DYQACCPFHHEKSPSFTVSQS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKI 113 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P D K + K Sbjct: 56 KQFYHCFGCGAHGNAISFLMDYDKLEFPEAIEELAAMQGLEVPRENVIARDGKPQASYKT 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +L L+E + F+ +L + YL RG+ I F++G+A +S S+ Sbjct: 116 KRNLYELLEAISQFYQQNLTQDIPSQS--YLQSRGLSPEIIARFEIGFAHNSMDSVLRKF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 E + + +I ++S YD+FRNR++FPIR RG+VIAFGGR + E KY Sbjct: 174 GT-NRDEVQKLFDTGMITQNDSGRIYDKFRNRVMFPIRDKRGRVIAFGGRVM-GDERPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +HKG LY F L + + + +++VEGYMDV++L Q GV N Sbjct: 232 LNSPESATYHKGNELYGLFHTLQ----------QNENPTSLVVVEGYMDVVALAQFGVDN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+SLGTA T Q++ +++++ +++ C+DGD G AA++A + L +L G ++ F+ L Sbjct: 282 VVASLGTATTGEQIKQMFRVTEQVICCYDGDRAGREAAWRAFENALPYLHDGRQLKFIFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF+R +GK FE + ++ L D L+ ++ + +++L IN Sbjct: 342 PDGEDPDSFVRAHGKQGFEAYLQNAMSLSDFLFDSLIAQVDLSSKEGKSKLAALAVPLIN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + LR Y + +L L + + + + + Sbjct: 402 RIPGEMLRVYLRNILGQKLGILDPAQLEAMLPSRVQSVQKLAVQPLQIKRTPM------- 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L+ L+ +P +++ A D + L L ++ Sbjct: 455 -----------RLLIALLLQNPELVKFVPDISALKTLDEPGFELLLE-LVDVCQQKVGVS 502 Query: 534 PEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALYKR 587 + + ++ L+ L D V + S E + + + L R Sbjct: 503 MGALLEHWRDKPNYRTLELLANWDHLVTPENIESTFIETLDFLYAKLVEKRIEVLIAKDR 562 Query: 588 FRLLS-RQKEEIEKQIAQ 604 L+ +K+E+ IAQ Sbjct: 563 TIGLNAEEKQELVMLIAQ 580 >gi|116333402|ref|YP_794929.1| DNA primase [Lactobacillus brevis ATCC 367] gi|116098749|gb|ABJ63898.1| DNA primase [Lactobacillus brevis ATCC 367] Length = 612 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 154/638 (24%), Positives = 290/638 (45%), Gaps = 41/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I+ + I++++GQYV + N + CPFH+E+TPSF + K Sbjct: 3 KIPEDVIETVRTATNIADVVGQYVQLKKSGKNL-----FGLCPFHEERTPSFSVAEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CFSC G+ FL L +F E+V ++A + V L D + + + LI Sbjct: 58 FHCFSCGRGGNVFKFLMELEHVTFPEAVVKVADFSHVDLDSEYRQDAQGPAVDSKTSQLI 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A +HH L + YL +RG+ IE ++LG+AP R L+ Q+ Sbjct: 118 ALQEQAAKLYHHILVNTEVGQPALDYLHQRGLTDETIETYQLGFAPGQR-LLKPFFDQRN 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236 + + ++GL I+ DRF R++FP+R++ G V AF GR + KYLNS Sbjct: 177 SDYQLLRQSGLFIEN-AQGELRDRFTERVMFPLRNASGHVTAFSGRLMQPADNQPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF+K + L+NF A ++ + + L EGYMDV+S QAGV+N ++ Sbjct: 236 PETTLFNKSRLLFNFDLARPAIR----------EAGEVTLFEGYMDVISATQAGVRNGIA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT+LT Q+ + + + ++ +C+DGD+PG RA +A+ L+ H +++ + L G Sbjct: 286 SMGTSLTTEQIYAIERTTDKLNVCYDGDEPGQRAISRALGLLNQHSH--LQLSVIQLPEG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPD + + +G AF++++ + + + N++ +T ER + + + + Sbjct: 344 QDPDEYRQAHGDVAFKQMMTTAKETPIKFQLRFLRRNKALDTDAERLDYVNQVMPLLAQV 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNARHRDQKGPSQRLMQSSLV 472 ++ Y + + + + R + R R+ + + Sbjct: 404 QEPVELDLYLNQLATEFKIDKSALLAQLKQTQRDVAAQAERDRPREPEKAPVAPPVTVYQ 463 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + + E LL L++ + + +AD + +++ Q +++ F + + Sbjct: 464 QQRPLTRLERAERNLLYHLLHDRNVWAKV-SSVADFCFVHDDYQVIYTLAQGYFQTHQTY 522 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + E +L+ +L+ A + LA+ + Sbjct: 523 QTAQFTDFIQEDRLQQLVIELETTTHAAATP------------REIDDYLAVIMNEAPVD 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q + + Q+A+ + G+AE+ L+ + ++ Q Sbjct: 571 EQLRQKKNQLAEASRLGDAEQQRQLVIEIVQLERQRQA 608 >gi|167037156|ref|YP_001664734.1| DNA primase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115575|ref|YP_004185734.1| DNA primase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855990|gb|ABY94398.1| DNA primase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928666|gb|ADV79351.1| DNA primase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 595 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 158/635 (24%), Positives = 291/635 (45%), Gaps = 43/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSKEMIEKVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L + ++ + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++AT +F++ L + ++ Y+ +RG+ I+ F +GY+ L L++KG+ Sbjct: 116 KVNKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR++ KYLN+PE Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q RL+ + +V+ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I + D+ Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + Q TE + + + + + R S K Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ L+ + + + + +N +L+ ++ + S + K +I Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + ++ +V + + L+ ++E+I Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ I + G+ EK L+ L ++ +I++ Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594 >gi|312874198|ref|ZP_07734232.1| DNA primase [Lactobacillus iners LEAF 2052A-d] gi|311090268|gb|EFQ48678.1| DNA primase [Lactobacillus iners LEAF 2052A-d] Length = 600 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERDLTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPENLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDHVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L + S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|315634866|ref|ZP_07890148.1| DNA primase [Aggregatibacter segnis ATCC 33393] gi|315476418|gb|EFU67168.1| DNA primase [Aggregatibacter segnis ATCC 33393] Length = 586 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 174/630 (27%), Positives = 289/630 (45%), Gaps = 53/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI D+L I I +LI V + DY ACCPFH EKTPSF +D K F Sbjct: 4 SIPRTFIDDILTKINIVDLINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSDKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115 Y+CF C G+ +SFL F+E+V+ LA G+ +P D + + + Sbjct: 59 YHCFGCGAHGNAISFLMEYDKLEFVEAVEELAGFLGLEIPYEKRPHFNDNGKQVGYQTKR 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L++ F+ L + YL +RG+ + IE F++GY P++ ++ + Sbjct: 119 NLYELMQEIAKFYQQQL--PLNIPAQSYLQQRGLSAEIIERFQIGYVPNAMDTVYRQFGK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++K+ + G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLN Sbjct: 177 TREEQQKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDRRGRTVAFGGRVL-TDEKPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPETI +HKG LY F AL +S +++VEGYMDV++L Q GV V Sbjct: 235 SPETITYHKGSELYGLFEALQA----------DDSPQKLLVVEGYMDVVALAQFGVNYAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGT+ T Q++LL++ + +++ C+DGD G AA++A++ L ++ G ++ F+ L Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYMEDGRQLKFIFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 EDPDSFIR YGK FE+ I ++ L + L+ T F++ + +A+L I I Sbjct: 345 DEDPDSFIRQYGKQGFEEYIEKAQSLSEFLFAHLTPKVDFSSKEGKAKLAALAIPLIKQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR + +L L + + + + + Sbjct: 405 PGDVLRLDLRNMLAKKLGILDPTQLESLMPNQAKQENEPVAQGIQFKPTPM--------- 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L+ L+ +P ++ + +L ++ + L+ L + E+ Sbjct: 456 ---------RILVALLLQNPELV-KFVPDLEPLKNLDEPGYDLFVELTALCREKVGISAG 505 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L++L + I D + + L + + Sbjct: 506 QLLEHWRDTKQQKTLEKLLAWN------HLIEDDKIEDTFRETLRYFYLQLVDKRIHWLI 559 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH 625 K A+ E ++ + L+ E Sbjct: 560 A---KDRAEGLDLNEKKELSHLLVKKQEKK 586 >gi|264677332|ref|YP_003277238.1| DNA primase [Comamonas testosteroni CNB-2] gi|262207844|gb|ACY31942.1| DNA primase [Comamonas testosteroni CNB-2] Length = 688 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 172/688 (25%), Positives = 288/688 (41%), Gaps = 94/688 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK F Sbjct: 29 AIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 83 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQT 115 ++CF C G+ + FL G F+E+VQ LA G+ +P D + +++ Sbjct: 84 FHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKAE 143 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L L+E A + + LK + YL +RG+ + F LGYAP + L Sbjct: 144 TLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA- 200 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + ++ E GL+I G++ + YDRFR+RL+FPIR+ +G+ I FGGR E KYLN Sbjct: 201 -EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGEYIGFGGRVF-GDEKPKYLN 258 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKG+ LY + A L+ + ++ EGYMDV++L Q G N + Sbjct: 259 SPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANAL 308 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T ++ L++ + +V FDGD G RAA KA+D L + F+ L Sbjct: 309 ATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLPS 368 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDSFIR +G AF + + ++ PL L + +E + RA + + + + + Sbjct: 369 EHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSLL 428 Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWK----------------- 451 D L+ I L ++ + + R Sbjct: 429 PDGALKRQLLSEIAALAQLDSRDLSDIWAQEAARTAPIARRAPAPPGPQAPEWDAPAGNW 488 Query: 452 ---------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + R +K ++ + + P RE Sbjct: 489 ESAPDWADAAAPAPSYPSQGSGGNWSGRKEFGRQRKPWGKKGEDWNPPQLGPRPTPVSRE 548 Query: 485 AALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 L+ H ++E +++ + N L+ +L + F E + ++L Sbjct: 549 DQAARLLMCHMEFMEEMTHEDFDALARCNQSHAPLFRWLEAQFTESGPRSWAVLREQLQG 608 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L ++L A E + ++R+ + L L L R++ + K+IA Sbjct: 609 SPCEPLAQKLMSGA------HANPEGEVDELRKELRGTLNLIL-VDHLKREEAKALKEIA 661 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631 E + + Sbjct: 662 TDPTAA---------RRYIEFQQRRKNL 680 >gi|294506978|ref|YP_003571036.1| DNA primase [Salinibacter ruber M8] gi|294343306|emb|CBH24084.1| DNA primase [Salinibacter ruber M8] Length = 655 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 173/674 (25%), Positives = 282/674 (41%), Gaps = 59/674 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + I+++ + + + YV + + Y CPFH+E TPSF + + Sbjct: 1 MAIPDEKIEEVRTAVDLVEVAEDYVQLKQSGS-----RYMGLCPFHNEDTPSFSVDPDQN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C GD F+ + G F+ESV+ LA GVPLP + + ++ Sbjct: 56 LYYCFGCQNGGDAFKFVQEIEGVGFLESVRMLADRYGVPLPEEET-DPDAANEREAVLHA 114 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A FF+ L ++ R + YL RG I+ F LGYAPD +L ++ Sbjct: 115 LRFAARFFYRQLTQSDRGRPALDYLRRRGFTPQTIKQFGLGYAPDEWDALLTVAEEEQID 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNS 236 E + +AGL+I+ ++ + YDR+R R+IFPI S G+V+AF GR L + KY+NS Sbjct: 175 RETLEKAGLIIERNDGSGYYDRYRGRIIFPIFSHIGKVLAFAGRILDPDDERDQPKYINS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET ++HK + LY A ++K + ++LVEGY DV+SL QAGV NVV+ Sbjct: 235 PETEVYHKKEVLYGLHQAKQAIRK----------TDEVLLVEGYTDVISLSQAGVGNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALTE Q+ L + + R V+ +D D+ G RAA + ++ VL G V L G Sbjct: 285 SSGTALTEQQISTLDRYAKRAVMLYDADEAGERAALRGMERVL---EAGLGAYAVELPAG 341 Query: 357 EDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ +G AF L ++R N TP++R E++ + + I Sbjct: 342 NDPDEYVQEHGGDAFSDYVQEHRQDLPSFAYQRARRNGVLETPEDRVEVQREIIESVARI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYIT--------------------------EHSGYGRY 449 D LR Y D + Sbjct: 402 PDPNLRREYVAHTSDVTGVPDSDLFRMLEEEREQMERRAQRRRKREQKRQQRQAEEGASP 461 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADI 508 + A D+ G S S+ K E L ++ + ++ +A Sbjct: 462 SGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEERVLFRLMLENGRRMVSLVLGHMALD 521 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA-GLWSATT 567 + + L + E P++I +L + +A W+ Sbjct: 522 EFSEGAPRDFARALAEMY-EDGTVRPQQILNGEHGEALQQLGASVMMDEHEASEHWAQKE 580 Query: 568 EANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---L 621 + ++ + +A + + + E + +++ Q + +G E+ L L Sbjct: 581 DISVPHLNDRPYEAARSAMKFLKMDRVDEAIEAVRERMYQASQQGADEEVQRLQQKMMSL 640 Query: 622 HEVHIQIHQIESQE 635 E+ I + E E Sbjct: 641 QELRKGIKRGEFLE 654 >gi|167039956|ref|YP_001662941.1| DNA primase [Thermoanaerobacter sp. X514] gi|300915493|ref|ZP_07132805.1| DNA primase [Thermoanaerobacter sp. X561] gi|307724720|ref|YP_003904471.1| DNA primase [Thermoanaerobacter sp. X513] gi|166854196|gb|ABY92605.1| DNA primase [Thermoanaerobacter sp. X514] gi|300888445|gb|EFK83595.1| DNA primase [Thermoanaerobacter sp. X561] gi|307581781|gb|ADN55180.1| DNA primase [Thermoanaerobacter sp. X513] Length = 595 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 158/635 (24%), Positives = 291/635 (45%), Gaps = 43/635 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I+ ++ I ++I +YV+ + ++ CPFH EKTPSF + K Sbjct: 1 MAYSKEMIEKVIEANDIIDVISEYVELKKAGK-----EFKGLCPFHREKTPSFMVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 Y+CF C+ G+ ++F+ + +F E+++ LA G+ L + ++ + ++ Sbjct: 56 VYHCFGCNASGNVVTFIMDIENLTFKEAIEFLADRVGITLEETVLTEREYQRKKLIDEIY 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ ++AT +F++ L + ++ Y+ +RG+ I+ F +GY+ L L++KG+ Sbjct: 116 KINKLATMYFYNKLFSEEGRQALTYIRKRGLTEATIKKFGIGYSSPHGNGLLNFLKEKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E +++AGLL + YDRFRNR++FPI +G VI FGGR++ KYLN+PE Sbjct: 176 TESFLVKAGLLSQ--KNNRYYDRFRNRVMFPIIDVKGNVIGFGGRSI-DDSLPKYLNTPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK L+ A I+VEGYMD +SL QAG+ V+SL Sbjct: 233 TEVFKKGKTLFAINFAKK------------TQQDKFIIVEGYMDAISLHQAGIDCAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q RL+ + +V+ +D D+ G+ AA + +D+ + + + G+D Sbjct: 281 GTALTEDQARLIKRYKGNVVIAYDADEAGISAALRGLDI---LDELNLNIKVLTIPYGKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AF +LI + L++ K +N + P +R + I + D+ Sbjct: 338 PDEFIKKEGVNAFNQLIENADSLIEFKAKVFRKNLDLDNPQDRIIYVKKIAKDIAKLSDE 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + Q TE + + + + + R S K Sbjct: 398 VKREVYISSAAKVAQIPENAVRTEVARFVNREIEKNQKNMYMAGNIRHNIYSSSKISP-- 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+ L+ + + + + +N +L+ ++ + S + K +I Sbjct: 456 -----EKYLIALLLYDNNLYKRVKETITADMLENVKLKPIFGEIMSRLEDGKKTQINDIV 510 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + ++ +V + + L+ ++E+I Sbjct: 511 YLLQEENLISDFNDIIKAFYES-----------ENVTEQAVDDIINKILINSLAVKREKI 559 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ I + G+ EK L+ L ++ +I++ Sbjct: 560 KRAINEAHMLGDIEKERQLLIELQNCEKEMLKIKN 594 >gi|323359855|ref|YP_004226251.1| DNA primase [Microbacterium testaceum StLB037] gi|323276226|dbj|BAJ76371.1| DNA primase [Microbacterium testaceum StLB037] Length = 612 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 150/619 (24%), Positives = 262/619 (42%), Gaps = 39/619 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I ++ + I++++G+ V G CPFHDE++PSFH G+ Sbjct: 3 RIRQSDIDEVKARVNIADVVGERVALKSAG----VGSMKGLCPFHDERSPSFHVRPQVGY 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD SFL A+ SF E+V+R+AA G L D + ++ L Sbjct: 59 YHCFGCGESGDVYSFLRAMDHVSFTEAVERMAARVGYTLHYEDGGPAPETTGRSRLYAAN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A ++F L +L +RG D+ A F +GYAP L +HL + F+ + Sbjct: 119 AAAAEYFRAQLMTPEADTGRRFLGDRGFDAGAAAHFGVGYAPKGWSHLMDHLLAQKFTRD 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 ++++AGL+ G YDRFR RL++PIR GQVI FG R L + KYLN+PET Sbjct: 179 ELLQAGLVSQGQR--GVYDRFRGRLVWPIRDVTGQVIGFGARKLYDDDQGPKYLNTPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K + LY A + +S R +++VEGY DV++ AG+ ++S GT Sbjct: 237 IYKKAQVLYGLDLAKRDISRSHR----------VVVVEGYTDVMACHLAGITTAIASCGT 286 Query: 301 ALTEYQLRLLWKLS------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 A + +L ++ +V FD D G +AA +A + + Sbjct: 287 AFGSDHITVLRRVMGDDSSSGEVVFTFDPDAAGQKAALRAFADEKRFAA---QTYVAVAP 343 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP G A L+ P+ + + + ++ + + RA + Sbjct: 344 EGLDPCDLRLQRGDGAVRALMDNKAPMFEFVIDQRLKDFDLGSVEGRAGALRAAAPIVAD 403 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVK 473 I+D LR Y + + RL + + R + R ++ + + S + Sbjct: 404 IRDPALRPGYVRVLARRLGLDMPEVQSAVERAARGADRAEKRETAREADAAPVAVSVTMA 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++ + + ++ E + + + L+ + S L S + Q + Sbjct: 464 SLPNTRDVALERGAMMAFLQYGHRIEPELFLRALQTPFGHPALEAVRSTLASTDLSQPGW 523 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + E + L ++ + + T E +V ++ L R L Sbjct: 524 AVAAV------EAVREPFRSLAAELLTSEFPARTEEGAVVAANDLSRRLLV-----RELE 572 Query: 593 RQKEEIEKQIAQVTAKGEA 611 RQK E+ +++ +V A + Sbjct: 573 RQKAELLREVQRVPADTDE 591 >gi|325576584|ref|ZP_08147302.1| DNA primase [Haemophilus parainfluenzae ATCC 33392] gi|325161147|gb|EGC73262.1| DNA primase [Haemophilus parainfluenzae ATCC 33392] Length = 628 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 179/637 (28%), Positives = 294/637 (46%), Gaps = 57/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF ++ K F Sbjct: 38 SIPRQFIDDLLTKSNIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSEKKQF 92 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 YYCF C KG+ +SFL F+E+V+ LAA AG+ +P + + + Sbjct: 93 YYCFGCGAKGNAISFLMDYDKLEFVEAVEELAASAGLEVPYEKRPNQFGNKPDVSYQTKR 152 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L++ F+ L + YL +RG+ IE F++GY P++ ++ + Sbjct: 153 NLYDLMQEIASFYQAQL--PLNIPAQIYLQQRGLSPEIIERFQIGYVPNAMDTVLRQFGK 210 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++K+ + G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLN Sbjct: 211 NREEQKKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLN 268 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPETI +HKG LY + AL + +++VEGYMDV++L Q GV V Sbjct: 269 SPETITYHKGNELYGLYEALQI----------NDEPEKLLVVEGYMDVVALAQFGVDYAV 318 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGT+ T Q++LL++ + +++ C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 319 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENSLPYLEDGRQIKFIFLPD 378 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD++IR YGK FE+ I ++ L + L+ + F+T + R +L I I Sbjct: 379 GEDPDTYIRQYGKEKFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAVPLIRQI 438 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR + +L Q + QK + M Sbjct: 439 PGDMLRLSLRNMLAQKLGIFDQSQLESLIPNQIDKAAPKPKTPQKTIKKTPM-------- 490 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ L+ + ++ + + +L L + E++ Sbjct: 491 ---------RVVISLLLQNSQLVNRISD-VGLQALKHEAGYELLEKLTALCREREGITTG 540 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 +I + + F + L+ L + + D+ A + R + + Sbjct: 541 QILEYFRDTEFSKPLEILASW-----------DHLLDDLE--IINAFSQNYRRLNIQAIE 587 Query: 596 EEIEKQIAQVTAKGEAEKTAILI-SILHEVHIQIHQI 631 +IE IA+ A+G ++ ++ ++L Q Q+ Sbjct: 588 RDIEMLIAKERAEGLTDQERAILVNLLKGKEEQKKQL 624 >gi|296166325|ref|ZP_06848762.1| DNA primase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898334|gb|EFG77903.1| DNA primase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 656 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 130/651 (19%), Positives = 243/651 (37%), Gaps = 40/651 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I ++G YV R CPFHDEK+PSFH + G Sbjct: 20 RIPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGH 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + +F+E+V+ LA G + P + ++ L+ Sbjct: 76 FHCFGCGEGGDVYAFIQKIEHVTFVEAVELLADRIGHTISYTGPATSVQRDRGSRSRLVA 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ +L++ YL ER D A F G+AP SL +HL +KGF Sbjct: 136 ANAAAAEFYAATLESDEAAPARQYLTERNFDGEAARRFGCGFAPSGWDSLTKHLVRKGFE 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIR++ G+VI FG R L + + KY+N+P Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRTAAGEVIGFGARRLFDDDPMEAKYINTP 253 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ +GV V+S Sbjct: 254 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLSGVTTAVAS 303 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA + L +L +L D A+ + + Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVA 363 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + + ++ + R + Sbjct: 364 PDGMDPCDLRLRSGDGALRDLVARRTPLFEFAIRTALAEMDLDSAEGRVAALRRCVPMVG 423 Query: 414 HIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467 IKD LR Y++ + + Q+ + ++ + + +Q+ Sbjct: 424 QIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRSQAKQSPAPVRGGTAANAARRVAQQPRA 483 Query: 468 ----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q + + L + + +PA+ + L + + + + Sbjct: 484 AVRSQPGATRPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAVRGAIE 543 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + ++ +L L ++ + + Y + Sbjct: 544 AAGGTSSGVTGAQWIDAVRQKAGSDLTAGLVSELGVEAVQVDDEKLP------RYIAGVL 597 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 598 ARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648 >gi|330993915|ref|ZP_08317845.1| DNA primase [Gluconacetobacter sp. SXCC-1] gi|329758861|gb|EGG75375.1| DNA primase [Gluconacetobacter sp. SXCC-1] Length = 598 Score = 355 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 168/639 (26%), Positives = 272/639 (42%), Gaps = 57/639 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F+ +L PI+ +IG+ R N + CCPFH EKTPSF+ D Sbjct: 1 MALDPAFLDELRARTPIAPVIGRRTKLVRSGKN-----WKGCCPFHGEKTPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C GD ++F+ G +FIE+V+ LA AG+ +P D + + L + Sbjct: 55 -YHCFGCQAHGDVITFVMESEGRTFIEAVEELATAAGMEVPKPDRAQRARAEEARTLGEV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + L + YL RG+ I F LG++ + R L + + + Sbjct: 114 LEAVQASWQRRLYQPEGREGLAYLRGRGLTDETIAAFGLGWSGEGRGGLVAEMAEHDITP 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAG++ ++ + F NR+ FPIR RG++++FGGR L KYLN PET Sbjct: 174 AMLLEAGVMRADEDGTPRRELFYNRVTFPIRDRRGRLVSFGGRIL-GDGQPKYLNGPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + L+ A ++ + + +++VEGYMDV++L QAG V+ LGT Sbjct: 233 IFSKRRVLFGLDRAREGVR-------GTGAGAELLVVEGYMDVIALHQAGFHGAVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QL LW++ P VLCFDGD G RAA KA L L + F +L GEDPD Sbjct: 286 ALTAEQLEALWQVGPAPVLCFDGDAAGQRAAVKAAQTALPLLNVERTLRFCVLPEGEDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G A L+ + P+ +L+ +E P++RA L L I D+ L Sbjct: 346 SLVRRDGSAAMAALVEGARPMGQVLFGLLSEGVRNPGPEQRAALRRRLVEVAALIPDKAL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + D + F++ + P+ ++V L Sbjct: 406 AAEYRSTLLDSFFETFRR---------------GGGKGAARPAIATAPVAMVDADLQ--- 447 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EEIHQ 539 R+ L ++ P ++ E + ++ L L + Q P E++ Sbjct: 448 --RQCILTAIILEQPVVMGEVQDAYCRLELP-ADIAALREELLDLYDAQGALPPAEDLAA 504 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L G ++ +++ G + D R+ + AL R Sbjct: 505 SLSATGLDDVCQRVRAVRGRRGRGRDEDDLFGTDPRREWWHFYALLNVGRF--------- 555 Query: 600 KQIAQVTAKGEAEKTAILISILHE-----VHIQIHQIES 633 +G+ E+ L E + ++ +++ Sbjct: 556 ----AAEIRGDTERMCA--GELDEAAWLSLRTRLLALDA 588 >gi|312871728|ref|ZP_07731816.1| DNA primase [Lactobacillus iners LEAF 3008A-a] gi|312875630|ref|ZP_07735631.1| DNA primase [Lactobacillus iners LEAF 2053A-b] gi|311088884|gb|EFQ47327.1| DNA primase [Lactobacillus iners LEAF 2053A-b] gi|311092670|gb|EFQ51026.1| DNA primase [Lactobacillus iners LEAF 3008A-a] Length = 600 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L + S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKS-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|134093712|ref|YP_001098787.1| DNA primase [Herminiimonas arsenicoxydans] gi|133737615|emb|CAL60658.1| DNA primase [Herminiimonas arsenicoxydans] Length = 602 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 168/649 (25%), Positives = 279/649 (42%), Gaps = 66/649 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G F+E+V+ LA G+ +P + P ++ E+ L Sbjct: 57 HCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMLVPEAEDRLPPAQRAEQQAKSMAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A DF+ L++A + YL RG+ + +GYAPD LR Sbjct: 117 SEAMNRACDFYRQQLRHAEGAKN--YLIGRGLTGEVAARYGMGYAPDGWDGLRAVFPDYE 174 Query: 178 FSEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + YDRFR+R++FPIR+S+GQVI FGGR + K Sbjct: 175 LDALVECGLVIDKAEEEGADHRQRKRYDRFRDRIMFPIRNSKGQVIGFGGRVM-GDGEPK 233 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET LF KG LY F A ++ + + ++ EGYMDV++L Q G Sbjct: 234 YLNSPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFP 283 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V++LGTA T ++ L + + +++ FDGD G RAA +A++ L + + F+ Sbjct: 284 QAVATLGTACTSIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPYAGDNKVIKFLF 343 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L DPDS+IR G +FEK + +++PL L K + TP+ RA + K + Sbjct: 344 LPSEHDPDSYIRAMGAESFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARTQFDAKPLL 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR + + + + E + +R R +R L Sbjct: 404 QALPPSSLRLQIVRGLAQ----ITESTPAEIEALFELVQPISRVRAAPPKGKRTAPVGL- 458 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQK 530 E ++ L+ HP + E Q D+ + L + Sbjct: 459 -----------ERQIMRLLVEHPVLAAELDQAALDVAAHFAPERADMLVQLVTMSREMGV 507 Query: 531 YFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + + L G F L+ ++ A +E+++ R A+ + Sbjct: 508 HANFATLAELLRSSGSDFDTLVAEIA----------AESESDVDAARLELAGAIR-QTKM 556 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEA 636 ++L+ + E + + + E+ L Q+ Q +++ A Sbjct: 557 KMLATEMETL------IASGLSGEQAQARYRELTLQQEQLRRQAQAEMA 599 >gi|229520814|ref|ZP_04410236.1| DNA primase [Vibrio cholerae TM 11079-80] gi|229342047|gb|EEO07043.1| DNA primase [Vibrio cholerae TM 11079-80] Length = 605 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 162/632 (25%), Positives = 267/632 (42%), Gaps = 62/632 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 19 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 73 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 74 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 133 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 134 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNF 193 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR + +G + KY Sbjct: 194 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDLRGRVIGFGGRVIGEG-TPKY 251 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKG+ LY + L + I++VEGYMDV++L Q GV Sbjct: 252 LNSPETPIFHKGEKLYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDY 301 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGT+ T +R +++ + ++ C+DGD G AA +A++ L L + + L Sbjct: 302 SVASLGTSTTTEHIRDIFRKTNTVICCYDGDRAGRAAARRALENALEFLNANKILKVLFL 361 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI-HLKNCI 412 GEDPDSF+R YGK FE+ I S LVD L + + + Sbjct: 362 PDGEDPDSFVRKYGKARFEEEIQNSQFLVDFLLSEIKKEAPDTDSKRWGTYVATNAAPLL 421 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 N D L+ Y + + + + + + + Sbjct: 422 NKTTDPSLKAYLWKELTLGTGWSDFQLQKFLNSLLTTNSNSQPAPHRAIKRTPM------ 475 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 ++ L+ +P+ + + L +S + + + Sbjct: 476 ------------RDVIALLVQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPHI 522 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + + LL +L + E + + + Q + Sbjct: 523 TTGQLLEHWRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------E 572 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +Q E ++ + + + L ++ Sbjct: 573 KQIENLQAK------ERSVGLSTEEKRELQDL 598 >gi|297160765|gb|ADI10477.1| DNA primase [Streptomyces bingchenggensis BCW-1] Length = 663 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 140/669 (20%), Positives = 257/669 (38%), Gaps = 76/669 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 +YCF C GD + F+ + SF E+++RLA+ AG+ L +++ +T L+ Sbjct: 60 FYCFGCQEGGDTVDFIMKIDHLSFAETIERLASQAGITLRYEQGSATPGRQQGERTRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L + + +L ERG D A + F +GY+P L LR +GF+ Sbjct: 120 AHKAAAQFYVEQLDSPEAEIGRRFLAERGFDQAAAQHFGVGYSPAGWDHLVRFLRGRGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL + DRFR RL++PIR G+V+ FG R L ++ KYLN+PE Sbjct: 180 DKELILSGLAQES--RRNPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TPLYKKSHVLYGIDLAKKEIAKTSRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L S +V FDGD G +AA +A + + Sbjct: 288 GTAFGGDHIKILRRLLMDNSSAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAVT 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A ++L+ L + + + +T RA + Sbjct: 345 PGGMDPCELRLAEGDGAVKELVDSRTQLFEFAIRHILARHNLDTAVGRAAALEEAAPVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471 IK++ +++ + + L L +++ W + R + Sbjct: 405 GIKNRSIQHESAVHLAGLLGILDTQFVVRRVAQLAQWARERGQRGGGPQQGGARRGGGPG 464 Query: 472 ---------------------------------------VKGKLSKKPSLREAALLLTLI 492 L E LL + Sbjct: 465 GGYGGPGQGSGPGQGSGPGAGRAAGPGGGPDGAPQPPRGPALNLRSPAHRVERELLKLAL 524 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 P ++ + + + + + R+ + + ++ Sbjct: 525 QRPELVSPAFDAYGIDEFTAPPYAAVRRAIEDAG--GASAADGDYLARVRDIAPDDTVRA 582 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + ++ + D + Y + R ++++ E+ + ++ + + + Sbjct: 583 MVHEL------AVEPPHTRRDPDEAYAGVQLVAVRLAAVNQRIGEVRGALQRLGSGADPD 636 Query: 613 KTAILISIL 621 A + + L Sbjct: 637 HLAAVQNEL 645 >gi|212633972|ref|YP_002310497.1| DNA primase [Shewanella piezotolerans WP3] gi|212555456|gb|ACJ27910.1| DNA primase [Shewanella piezotolerans WP3] Length = 576 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 173/601 (28%), Positives = 292/601 (48%), Gaps = 53/601 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P + +++ DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFVDAIEELAGQLGLEVPQEQGTGKPRDQELSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E ++ FF L+ DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEESSLFFQSQLRQHPDKQKVLDYLSHRGLSKDVVEHFNIGFAPDGWDGLLSRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+ K++ AG++I+ D+ YDRFR+RL+FPIR RG+VI FGGR L +G + KYLNSPE Sbjct: 176 SQNKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVLGEG-TPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------QQVLIVEGYMDVVALGQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PGN+V F+ L GED Sbjct: 284 GTSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK FE+ I +++ L + L++ + ++++ L + I ++D Sbjct: 344 PDTLVRQIGKEQFEQNIGQAMALPEFLFENLAKKF---GKEDKSVLAKNAIKLIEKVQDT 400 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L+ + + + + K +H+ KG L Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSTKTADKPKQHKALKGRGTPL----------- 449 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP + ++ ++LA + L L D K ++ Sbjct: 450 -------RLAIALLVQHPRLGEKLPEQLALKHVQMPGIDLLALVL--DLTRGKVMSSAQL 500 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ LK+L + + ++ + + L ++ + L ++ +E Sbjct: 501 LEQFRGDNQFSTLKKLTQW---------DHQVADENLLKELKGTL-VWLNNQYLEQRYQE 550 Query: 598 I 598 + Sbjct: 551 L 551 >gi|229820280|ref|YP_002881806.1| DNA primase [Beutenbergia cavernae DSM 12333] gi|229566193|gb|ACQ80044.1| DNA primase [Beutenbergia cavernae DSM 12333] Length = 667 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 148/683 (21%), Positives = 260/683 (38%), Gaps = 76/683 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 R+ I + I ++G +V G CPFHDE+TPSFH G Sbjct: 4 RIRREDIGAVREKARIEEIVGDHVSLRSAG----VGSMKGLCPFHDERTPSFHVRPQLGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTD 116 ++CF C GD +SF+ + +F E+++RLAA GV L D + ++ + Sbjct: 60 WHCFGCDEGGDVISFVQKIDHLTFTEAIERLAARTGVVLRYEDDGGGTSRPREEPGRRQR 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ +A++++ L + +L ERG D A + F +GYAP L HLR + Sbjct: 120 LVEAHRIASEYYAEQLAAPEAEPARTFLAERGFDRAAAQTFGVGYAPKGWDHLLRHLRGR 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 GF+E ++ +GL+ G+ YDRFR RL++PIR G VI FG R L + KYLN Sbjct: 180 GFTEAELAASGLVSQGNR--GHYDRFRGRLMWPIRDITGDVIGFGARHLYADDPGPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET ++ K + LY A + K +++VEGY DV++ AG+ + Sbjct: 238 TPETPIYRKSQVLYGIDVAKREIAK----------ERQVVVVEGYTDVMAAHLAGIGTAI 287 Query: 296 SSLGTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAID 336 ++ GTA +R++ + + ++ FDGD+ G +AA +A Sbjct: 288 ATCGTAFGADHVRIVRRLLGDAADSSAGVMLASGRAVGGEVIFTFDGDEAGQKAALRAFG 347 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 ++ + G DP G A L+ E PL + + + Sbjct: 348 EDQQFA---SQTFVAVSPDGLDPCDLRLQRGDAAVRALVSEREPLFEFAIRSVLARVDLD 404 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 TP+ R + I+D LR Y++ + L + R + Sbjct: 405 TPEGRVAGLRVAAPVVARIRDHALRGEYARELAGWLGMDVVDVRRAVASAPRGDARPRGD 464 Query: 457 RDQKGPSQ--------------RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ- 501 R Q + + E +L + PA + Sbjct: 465 ARSADGRPDGGRGETRAGDDSGRSAQRRPAQPYPDDPVAKLERQVLEVALQLPAFAADAG 524 Query: 502 YQELADIRYDNNELQKLWSFL--------FSDFVEQK-----YFLPEEIHQRLCERGFGE 548 + L + + + + F F EQ+ + + Sbjct: 525 FDSLDAAAFQVPAYRAVHDAVRAAGGAAAFETFREQQRAAGAADVDRAAAAAWSDAVLEG 584 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + L V + + A+ + GY + + ++R+ +I ++ ++ A Sbjct: 585 AVGPLASLVTELAVAPLP--ADREEALGGYARGVVRAVVRLGVTRKIGDIRGRLQRMDAA 642 Query: 609 GEAEKTAILISILHEVHIQIHQI 631 +E+ + L + + + Sbjct: 643 --SEEYQAAFAELLVLEQERRGL 663 >gi|325690017|gb|EGD32021.1| DNA primase [Streptococcus sanguinis SK115] Length = 602 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 266/634 (41%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAVNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYRRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQSAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRGTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDKAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R +++ R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSNRSQEVPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|157960787|ref|YP_001500821.1| DNA primase [Shewanella pealeana ATCC 700345] gi|157845787|gb|ABV86286.1| DNA primase [Shewanella pealeana ATCC 700345] Length = 576 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 171/630 (27%), Positives = 299/630 (47%), Gaps = 58/630 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P + +++ DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFVDAIEELAGQLGLEVPREQGTGKPRDQELSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A++FF + L+ DK+ YLD RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASNFFQNQLRQNTDKQKVLDYLDHRGLTKEVVEHFNIGFAPDGWDGLLSRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++K++ AG++I+ D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 SQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + R +++VEGYMDV++L Q V V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PGN+V F+ L GED Sbjct: 284 GTSTTADQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK FE I +++ L + L++ + ++++ L + I ++D Sbjct: 344 PDTLVRQIGKEQFEAQIDQAMALPEFLFENLAKTY---ANEDKSVLAKNAIKLIEKVQDT 400 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L+ + + + + +K ++H+ KG L Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSAKAAEKPSQHKALKGRGTPL----------- 449 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP + ++ ++ L+ + ++ Sbjct: 450 -------RLAIALLVQHPRLGEKLPEQ--------PALKHIQMAGIDLLTLVLDLTRGQV 494 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + ++ L + ++ Q ++ L ++ + L ++ +E Sbjct: 495 ---ISSAQLLEQFRGDNQFSTLKKLTQWDHQVADENLLQKLKETL-VWLNNQYLEQRYQE 550 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + E+ L ++ + + Sbjct: 551 L-----SMKQNLTKEERLQLSKLISVIKNK 575 >gi|309803288|ref|ZP_07697385.1| DNA primase [Lactobacillus iners LactinV 11V1-d] gi|308164796|gb|EFO67046.1| DNA primase [Lactobacillus iners LactinV 11V1-d] Length = 600 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAI--SKKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVELLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L + S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|327473234|gb|EGF18654.1| DNA primase [Streptococcus sanguinis SK408] Length = 602 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 267/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +++L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKVILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|49486398|ref|YP_043619.1| DNA primase [Staphylococcus aureus subsp. aureus MSSA476] gi|78099124|sp|Q6G904|PRIM_STAAS RecName: Full=DNA primase gi|49244841|emb|CAG43301.1| DNA primase [Staphylococcus aureus subsp. aureus MSSA476] Length = 605 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 149/636 (23%), Positives = 263/636 (41%), Gaps = 40/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSIINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDL 117 +CF C G+ F + SF+E+V+ L V + + + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDIEATQFNSNIQIASDDLQM 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + E+ +F++++L K ++ YL ERG I+ +G+APDS + + L+++ Sbjct: 116 IEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERGIGFAPDSSHFCHDFLQKR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G+ E EAGLL + + + YDRFRNR++FP+++++G+++ + GRT G+ KYLNS Sbjct: 176 GYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIVGYSGRT-YTGQEPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F K K LYN A ++K I+L+EG+MDV+ AG++NVV+ Sbjct: 235 PETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLEGFMDVIKSDTAGLKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 ++GT L++ + + KL+ I L FDGD G A K L G V + L G Sbjct: 285 TMGTQLSDEHITFIRKLTLNITLMFDGDFAGSEATLKTGQ---HLLQQGLNVFVIQLPSG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG AF + ++ + L + I+ +K Sbjct: 342 MDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMK 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----WKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ E D+ G + Sbjct: 402 SSILQQKALNDVAPFFNVSPEQLANEIQFNQAPANYYPDDEYGGYDEYGGYIEPEPIGMA 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A L L+ Y+ + + N + ++ L + E + Sbjct: 462 QFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKDNFTNQHFKYVFEVLHDFYAENDQY 521 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q + E L L++ + + Y + + Sbjct: 522 NISDAVQYVNSNELRETLISLEQY--------NLNDEPYENEIDDYVNVINEKGQET--- 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + T G+ E + + + + Sbjct: 571 --IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 604 >gi|309810232|ref|ZP_07704077.1| DNA primase [Lactobacillus iners SPIN 2503V10-D] gi|308169504|gb|EFO71552.1| DNA primase [Lactobacillus iners SPIN 2503V10-D] Length = 600 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 273/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPENLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R + + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMAKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L S + Sbjct: 464 SASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|170699446|ref|ZP_02890490.1| DNA primase [Burkholderia ambifaria IOP40-10] gi|170135646|gb|EDT03930.1| DNA primase [Burkholderia ambifaria IOP40-10] Length = 622 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 174/654 (26%), Positives = 278/654 (42%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168 + T L ++ VA D++ L+ YL RG+ F LGYAPD + Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RFLFLPSEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F++ R + Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIAAPARQ------------- 450 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ + E L TL+ HP I + E + +L++ + Sbjct: 451 --APPRSERRRVTDSEKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508 Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620 >gi|325912169|ref|ZP_08174567.1| DNA primase [Lactobacillus iners UPII 143-D] gi|325476119|gb|EGC79287.1| DNA primase [Lactobacillus iners UPII 143-D] Length = 600 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L + S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKS-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|152999722|ref|YP_001365403.1| DNA primase [Shewanella baltica OS185] gi|151364340|gb|ABS07340.1| DNA primase [Shewanella baltica OS185] Length = 574 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 180/620 (29%), Positives = 296/620 (47%), Gaps = 55/620 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLISNDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRYRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + +V C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK +FE L+V ++ L + L+ ++ L I I+D Sbjct: 344 PDSMVRKIGKDSFETLMVSAIALPEFLFDTLATKY----GTDKGNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K ++ KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQAKPMANKGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A ++ L L EQ ++ Sbjct: 448 ------RLAIALLVQHPKLGMGLPPQPALAHLQMPGIE-LLPLLLEMTREQ-TLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ E + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFREHPYSGTLHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILI 618 + Q K E + + LI Sbjct: 550 --SLKQTHTKEEKMQLSKLI 567 >gi|315653574|ref|ZP_07906494.1| DNA primase [Lactobacillus iners ATCC 55195] gi|315488936|gb|EFU78578.1| DNA primase [Lactobacillus iners ATCC 55195] Length = 600 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 276/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEFALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N+ + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L + S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLANLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EIQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|221197052|ref|ZP_03570099.1| DNA primase [Burkholderia multivorans CGD2M] gi|221203724|ref|ZP_03576742.1| DNA primase [Burkholderia multivorans CGD2] gi|221175890|gb|EEE08319.1| DNA primase [Burkholderia multivorans CGD2] gi|221183606|gb|EEE16006.1| DNA primase [Burkholderia multivorans CGD2M] Length = 621 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 176/658 (26%), Positives = 279/658 (42%), Gaps = 69/658 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------DPKIEKKEK 112 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGGSDYPAPVSKS 116 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SL 169 + T L ++ A D++ L+ YL RG+ F LGYAPD + Sbjct: 117 VATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAA 174 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 R E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L GE Sbjct: 175 FPDYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSGE 234 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 P-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQL 283 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 GFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIR 343 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ L DPDS++R +G AF + ++PL L ++ + P+ RA+ K Sbjct: 344 FLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAK 403 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + LR I DRL F++ R Sbjct: 404 PLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAPR 448 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E L TL+ HP I E + +L++ + Sbjct: 449 QAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVSTLRALPRIGELFAEVVDHARAL 508 Query: 530 KYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ-- 579 + + + E+ +++ D VRD L + EA R+ + Sbjct: 509 GDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERIA 568 Query: 580 ----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 QA L R+ + + + +Q + T ++ L E++ Q ++ Sbjct: 569 GEELQAAVLKMRYDACCDRLDRLARQ---------STFTPEELAELTELNRQRTDMKR 617 >gi|254248773|ref|ZP_04942093.1| DNA primase [Burkholderia cenocepacia PC184] gi|124875274|gb|EAY65264.1| DNA primase [Burkholderia cenocepacia PC184] Length = 637 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 174/655 (26%), Positives = 277/655 (42%), Gaps = 64/655 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 16 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 71 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGDYPAPVS 130 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167 + + T L + A D++ L+ YL RG+ F LGYAPD Sbjct: 131 KSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 188 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 189 AAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 248 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 249 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 297 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 298 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRT 357 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 358 IRFLFLPTEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 417 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + LR DRL F++ T R + Sbjct: 418 AKPLLQALPANALRAQIMHMFADRLDIPFEEVATLSDVDTRIAMPPRQ------------ 465 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 ++ + E L TL+ HP I + E + +L++ + Sbjct: 466 ---APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDHAR 522 Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 523 ALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQER 582 Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 583 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 635 >gi|332361595|gb|EGJ39399.1| DNA primase [Streptococcus sanguinis SK1056] Length = 602 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 146/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|313764536|gb|EFS35900.1| DNA primase [Propionibacterium acnes HL013PA1] gi|313816078|gb|EFS53792.1| DNA primase [Propionibacterium acnes HL059PA1] gi|314915532|gb|EFS79363.1| DNA primase [Propionibacterium acnes HL005PA4] gi|314920000|gb|EFS83831.1| DNA primase [Propionibacterium acnes HL050PA3] gi|314932013|gb|EFS95844.1| DNA primase [Propionibacterium acnes HL067PA1] gi|314955883|gb|EFT00283.1| DNA primase [Propionibacterium acnes HL027PA1] gi|314958196|gb|EFT02299.1| DNA primase [Propionibacterium acnes HL002PA1] gi|315098454|gb|EFT70430.1| DNA primase [Propionibacterium acnes HL059PA2] gi|315101188|gb|EFT73164.1| DNA primase [Propionibacterium acnes HL046PA1] gi|327450863|gb|EGE97517.1| DNA primase [Propionibacterium acnes HL087PA3] gi|327453789|gb|EGF00444.1| DNA primase [Propionibacterium acnes HL083PA2] gi|328754282|gb|EGF67898.1| DNA primase [Propionibacterium acnes HL087PA1] gi|328754465|gb|EGF68081.1| DNA primase [Propionibacterium acnes HL025PA2] Length = 623 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 260/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLEVALLVESVLREEPD-------RDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|152979908|ref|YP_001352182.1| DNA primase [Janthinobacterium sp. Marseille] gi|151279985|gb|ABR88395.1| DNA primase [Janthinobacterium sp. Marseille] Length = 599 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 171/631 (27%), Positives = 276/631 (43%), Gaps = 51/631 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G F+E+V+ LA G+ +P + P ++ E L Sbjct: 57 HCFGCGAHGTAIGFLIEYSGMGFVEAVKDLAQNVGMIVPEAEDRLPPAQRAEHQAKSMAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A D++ L+ +R YL RG+ + +GYAPD LR Sbjct: 117 SEAMTQACDYYRQQLR--HAERAKNYLIGRGLTGEIAARYGMGYAPDGWDGLRSVFPDYE 174 Query: 178 FSEEKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + + + YDRFR+R++FPIR+++GQVI FGGR L GE KYLN Sbjct: 175 VEALVESGLVIDKAEEEGANRKRYDRFRDRIMFPIRNTKGQVIGFGGRVLDNGEP-KYLN 233 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KG LY F A ++ + + ++ EGYMDV++L Q G V Sbjct: 234 SPETPLFQKGSELYGLFEARQAIR----------EAGYALVTEGYMDVVALAQLGFPQAV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T ++ L + + +++ FDGD G RAA +A++ L H + F+ L Sbjct: 284 ATLGTACTPIHVQKLLRQTDQVIFSFDGDKAGRRAARRALEASLPHAGDNKVIKFLFLPS 343 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR G AFEK + +++PL L K + TP+ RA + K + + Sbjct: 344 EHDPDSYIRELGTEAFEKQVQDAMPLSQFLLKEAVGDNDLGTPEGRARAQFDAKPLLQAL 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR +++ + + E + +R R ++R Sbjct: 404 PPSSLRLQIVRSLAQ----ITESTPAEIEALFELAQPISRVRAAPPRTKR---------- 449 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQKYFL 533 P E ++ L++HP + E Q DI + + L + Sbjct: 450 --AAPQGLERQIMRLLVSHPILAAEMDQAALDIAAHFAPERAEMLVQLVTLSREMGPQAN 507 Query: 534 PEEIHQRLCERG--FGELLKQLDRQ------VRDAGLWSATTEANIVDVRQGYQQALALY 585 + + L G F L+ ++ + + L A + + +R Q +A Sbjct: 508 FAILAELLRSSGSDFEPLIAEIAAEPESDVALARLELAGAIRQTKMQALRDELDQLVAAG 567 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + E+ Q Q+ + +AE Sbjct: 568 LVGEQAQARFRELTLQQDQLRRQAQAEMMQR 598 >gi|314918345|gb|EFS82176.1| DNA primase [Propionibacterium acnes HL050PA1] Length = 640 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 141/635 (22%), Positives = 253/635 (39%), Gaps = 45/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLEVALLVESVLREEPD-------RDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + ++ ++ + + + + S L + Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609 >gi|259500590|ref|ZP_05743492.1| DNA primase [Lactobacillus iners DSM 13335] gi|302191281|ref|ZP_07267535.1| DNA primase [Lactobacillus iners AB-1] gi|259167974|gb|EEW52469.1| DNA primase [Lactobacillus iners DSM 13335] Length = 600 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 275/631 (43%), Gaps = 41/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N+ + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHSS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL I++ + + N Q+L S + Sbjct: 464 SVSFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQLADLWLSYLEKNPNPNISGF 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ + + + +E I D Q +L K+ +L + + Sbjct: 522 ADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD------QIASLIKQKTIL--EMQR 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QI K +++ L + E+ +I Sbjct: 569 LYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 599 >gi|229844309|ref|ZP_04464449.1| DNA primase [Haemophilus influenzae 6P18H1] gi|229812558|gb|EEP48247.1| DNA primase [Haemophilus influenzae 6P18H1] Length = 593 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 171/634 (26%), Positives = 289/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINARVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEVPYEKRANNSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIAAFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKG LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGNELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|227892547|ref|ZP_04010352.1| DNA primase [Lactobacillus ultunensis DSM 16047] gi|227865668|gb|EEJ73089.1| DNA primase [Lactobacillus ultunensis DSM 16047] Length = 610 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 156/638 (24%), Positives = 286/638 (44%), Gaps = 46/638 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 7 RIPEEFISEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A +P+P + + ++R+ Sbjct: 62 FKCFGCGKGGNVFKFLMYKDNLTFPESVERVAEFAHIPMP--TGYGKGSAPKLSPIMRMH 119 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + AT+F+H L +R Y +R +D +E FK+GYAP L +LR KG+ + Sbjct: 120 QDATEFYHRVLLTTKAGERGMQYAKKRELDHDTLEHFKIGYAPKQDNVLITYLRGKGYQD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + +DRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 180 DDLAKSGLFVQSKDG-RLFDRFRDRLMFPLDNENGKTIGFSGRRISNDKTEAKYMNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + S +IL EGYMDV++ +AGV++ ++S+G Sbjct: 239 EIFTKSKVLFHFAEAKRAAR----------SEGHLILYEGYMDVIAAYKAGVKSGIASMG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 289 TSLTDDQIYMLRRVTPNIIVNYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R YG + + + +L D KR + + + E+ I+ +++ Sbjct: 347 DEYVRKYGAEKYREEVKGALTPTDFFLKRLAQKYNLDNDREKITYLNEAIKEISQVRNPV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL--S 477 + Y + + + + R + H Q +S+ + Sbjct: 407 EQDMYVEKLARSAGVSIESLKANLARERRKNNRARSHMRQYRDYSVPTDTSIPESAPITE 466 Query: 478 KKPSLREAA-------LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + P EA LL I+ + + + + + + L + Sbjct: 467 EVPQQTEAQQHPCQTRLLYLFIHAAQAQKYLLE--GHFHFPDKDFESLANLWIKYQETHD 524 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + E+ L + DA L + I +V + Q + R Sbjct: 525 NPQIDGFLDFIPEQ--------LQGIIVDAELAEMPKDFTIQEVDEYVQS-----LQKRS 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E++ Q+ K + ++ + + + + Sbjct: 572 IYSRLNELKNQLQDAKRKQDVQEILKITQEIIGLKRIL 609 >gi|315103505|gb|EFT75481.1| DNA primase [Propionibacterium acnes HL050PA2] Length = 623 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R ++ P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIAPPPKSEQGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|324990503|gb|EGC22439.1| DNA primase [Streptococcus sanguinis SK353] Length = 602 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 146/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFAFDSEELQILYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|154482669|ref|ZP_02025117.1| hypothetical protein EUBVEN_00344 [Eubacterium ventriosum ATCC 27560] gi|149736445|gb|EDM52331.1| hypothetical protein EUBVEN_00344 [Eubacterium ventriosum ATCC 27560] Length = 587 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 157/609 (25%), Positives = 271/609 (44%), Gaps = 33/609 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I+ + I ++IG YV ++ + Y+ CPFH+EK+PSF + K Sbjct: 1 MFYSEDIIEQVRTENNIVDVIGDYVKLQKKGS-----SYFGLCPFHNEKSPSFSVSPHKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +SFL +F+E+++ LA AG+ LP + +++ +++ +I Sbjct: 56 MYYCFGCGEGGNVISFLMKYENYTFVEALEVLANRAGIELPKMEYSKEARQEKDLKSKII 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++H+ L++ R K ++YL R + I F LGY+ +L ++LR KG+ Sbjct: 116 EINTEAAKYYHYLLRSDRGKTAYHYLKGRELSDKTIVKFGLGYSDKYSNNLYQYLRSKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ ++ E GL D+F NR++FPI + +VIAFGGR + KYLNSPE Sbjct: 176 NDTELKETGLFTFD-EVRGVNDKFWNRVMFPIMDANNRVIAFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K +NLY A + + ++++ EGYMDV+SL QAG N V++L Sbjct: 234 TKVFDKSRNLYGLNVARSARK------------DYMLICEGYMDVISLHQAGFNNAVAAL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T L+ + + VL FD D+ G++AA +AI G + + + +D Sbjct: 282 GTAFTSRHASLIKRYAKEAVLTFDSDEAGIKAALRAI---PYLRESGLAIKVLNMKPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G+ A+E+ I + E +N N P E+ + + + KD+ Sbjct: 339 PDEFIKNMGREAYEERIKTATNFFIFQVDNERKNYDLNDPQEKTAFQNKVAEMLLVFKDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y ++ KK + ++ Q Q K Sbjct: 399 LERENYIDSVCQTFNISKDGLSRLVK------KKALNYVGKEETVQERQQVENKKSTKED 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI+ ++ Q ++ + + + + K P +I Sbjct: 453 AAIKTQRILLAYLIDRDNWFKKVAQVISPEDFIDPFYHDVAVRFWEQMESGKG-NPAQIM 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + +L A L A E I D +++ Y+ + +++ Sbjct: 512 DSYSDEEEHKKVAELFVSPIRANLSLAEQERAINDAVIKIKKSSLDYRASKA--TDIQDL 569 Query: 599 EKQIAQVTA 607 + I + Sbjct: 570 QNIIKEQNQ 578 >gi|325693941|gb|EGD35859.1| DNA primase [Streptococcus sanguinis SK150] Length = 602 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|115358007|ref|YP_775145.1| DNA primase [Burkholderia ambifaria AMMD] gi|115283295|gb|ABI88811.1| DNA primase [Burkholderia ambifaria AMMD] Length = 622 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 179/654 (27%), Positives = 282/654 (43%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168 + T L ++ VA D++ L+ YL RG+ F LGYAPD + Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RFLFLPSEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F++ R ARH + +R+ Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIA-APARHAPPRSERRRVTD 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S E L TL+ HP I + E + +L++ + Sbjct: 463 S--------------EKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508 Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620 >gi|328945883|gb|EGG40033.1| DNA primase [Streptococcus sanguinis SK1087] Length = 602 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAATDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMMVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +++HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLNRLMRAENHIFHRMLHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLSDNVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|253576088|ref|ZP_04853420.1| DNA primase [Paenibacillus sp. oral taxon 786 str. D14] gi|251844431|gb|EES72447.1| DNA primase [Paenibacillus sp. oral taxon 786 str. D14] Length = 612 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 157/634 (24%), Positives = 279/634 (44%), Gaps = 42/634 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I+ +L I + + ++V ++ CPFH EKTPSF + + Sbjct: 12 IPEEVIEAVLRQHDIVDTVSKHVHLTKQGK-----YLKGLCPFHSEKTPSFTVTPERQIF 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDLI 118 +C+ C G+ + F + G +F E+V+ +A A + P D + + +L+ Sbjct: 67 HCYGCGKGGNAIKFRMEIEGLTFPEAVRIMADEAHI--PYEDKGRGYADTPRNRELEELL 124 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E ++ +H+ LKN K YL RG AI+ F++GYAP +L + L ++ Sbjct: 125 QAHEWSSKLYHYLLKNTEYGKPAMEYLKSRGFTDKAIDTFQIGYAPARWDTLVQFLDKRS 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F+ E + + GLL + + DRFR+R+IFP+ + G+VIAF GR L KYLNSP Sbjct: 185 FNLETMEKGGLLSSKQDGSGYVDRFRDRVIFPLHNRNGKVIAFAGRVL-GDGQPKYLNSP 243 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ LF K + LYN A N ++K + I+L EGY DV+S +AGV N V++ Sbjct: 244 ESKLFTKSRVLYNLHQAKNEIRK----------TGQIVLFEGYGDVISAWEAGVHNGVAT 293 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE+ ++ L+ +++C+DGD G AA K+I ++ +V +LS G Sbjct: 294 MGTALTEHHAAIMRSLADEVLVCYDGDSAGQAAALKSIPILEGAGFS--QVKIAMLSEGL 351 Query: 358 DPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD FI+ YG F +++ ++ V +N D + + I + Sbjct: 352 DPDEFIQKYGAERFRHQVLDGAVSSVKFRLIYLRKNHILLEEDGKIAYIKEAMSIIAALS 411 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ---RLMQSSLVK 473 R Y + + LQ F E + +K A D K R + Sbjct: 412 SPSEREIYLKELSAELQVSFDSLKQECNELRTAMQKKANAGDNKPERWNNGRHKKGQASM 471 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L + E LL ++ + + + L ++ + + ++L++ + + K Sbjct: 472 PTLLPAFHVAERRLLSFMLQDEEVSRYVGERLGT-NFNIEDHVAIAAYLYAYYAQGKPPD 530 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L + +L++ V + E ++ ++ + L Sbjct: 531 ASRFISSLQDE-------RLEQTVISIAMMDTPAEWTTQELDDCIREI-----QKVPLLE 578 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q + ++++ G+ + A + S + + Q Sbjct: 579 QIKRKKEEMVSAERAGDYLRAAQIASEIIALERQ 612 >gi|118581453|ref|YP_902703.1| DNA primase [Pelobacter propionicus DSM 2379] gi|118504163|gb|ABL00646.1| DNA primase [Pelobacter propionicus DSM 2379] Length = 584 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 261/633 (41%), Gaps = 54/633 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +++++ I ++ +YV R N Y CPFH EKTPSF+ N ++ + Sbjct: 2 IPDHKVREVVERASIVEVVSEYVPLRRSGAN-----YLGLCPFHAEKTPSFNVNPAREIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C V G+ +SF+ + G SF ESV+ LA GV + P ++ ++ R+ Sbjct: 57 HCFGCGVGGNVISFVMKIEGLSFPESVKLLARKTGVDIEERLLTPAEKQAQEEHKIFRRI 116 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E+A ++ L + + YL++R E + LG+APD R L ++L+ +G S Sbjct: 117 QELAAAYYCGVLQRASEAGLAREYLEKRNASGQIAETYGLGFAPDRRDGLVQYLKSQGAS 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + L I +D FRNRLIFP+RS +G VIAF GR L G KY+NSPE+ Sbjct: 177 LDLAL--KLGIVRKGDRGWHDLFRNRLIFPVRSPKGDVIAFAGRVL-DGSLPKYINSPES 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+HK L+ AL ++ + + +I+VEGY D L+L +AGV+NVV++ G Sbjct: 234 PLYHKSSVLFGLDLALPAIR----------TENSVIIVEGYFDHLALYRAGVRNVVATCG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT L+ + R FDGD G +A ++++L L + L G+DP Sbjct: 284 TALTARHAALIKRHCARAFTLFDGDSAGQKATIRSMEL---FLEQKLPAYVIDLPAGDDP 340 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DSF+ AF + P + + + ++ D + + L I D Sbjct: 341 DSFLDANSVEAFRSCQKNAKPAFEYFIRYVMASIPADSVDSKVRIVDELVPRFRKIADPL 400 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + I L + G P Sbjct: 401 ERDLYEKEICRLLGIASHAFRKRLGGMDVNSHDLTEGGKGGTPPGDS------------- 447 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIH 538 R+ LL + +P E + + + + L F+ + + Sbjct: 448 ---RQETLLGLICAYPEACSEVA-KCGVDKLFDGQYLALARFVLDEVAANGQLRTLSHVV 503 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ L +L V D L + ++ L + L ++I Sbjct: 504 DKIESEELKLFLSRL--LVSDNHLEGVD--------WKDVFESCRLIREKSALHYGYKDI 553 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++AQ+ E+ L+ + + ++ Sbjct: 554 AARLAQLEPG--CEEYMSLLQQAELLRTRKSRL 584 >gi|332365902|gb|EGJ43658.1| DNA primase [Streptococcus sanguinis SK1059] Length = 602 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V + ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|188590265|ref|YP_001920275.1| DNA primase [Clostridium botulinum E3 str. Alaska E43] gi|188500546|gb|ACD53682.1| putative DNA primase [Clostridium botulinum E3 str. Alaska E43] Length = 592 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 286/625 (45%), Gaps = 41/625 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I+ + I ++I + V R N + CPFH +KTPSF + K Sbjct: 1 MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHSDKTPSFSVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFSC G+ L+F+ +F+E+V+ LA A +P+ + + + K + L ++ Sbjct: 56 IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLANKANIPINLHSNETPQFIKKREILYKI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ +L+ + Y RGI I+ F LGY+ +S L +LR KG+ + Sbjct: 116 NVEAGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRTKGYKD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL+ YDRFRNR++FP+ +G+VI FGGR L KYLNSPET Sbjct: 174 DFLLEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NLY A+ K ++I+VEGYMD+++L Q GV NVV+SLGT Sbjct: 233 IFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q +LL + + +++ +D D G A + +++ G V +++ +G+DPD Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R GK AF KL E+LPL++ KR E + + + + + + + Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVAKILADL-NPVE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S +K + ++K + K + Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKNQKEDNYVNKK-------EDFGTKLYVEPAY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ALL ++N I + ++ + + ++++S + E + + R Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSGDFILDSHKRIYSLILESKNENSNNIESYVENR 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E ++ + L +N + Y + +K L + +++ Sbjct: 511 CDE------IESSKEWIAIKELEVLDL-SNKDKLINDYLNEVKCFK----LQLEINDLKN 559 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 + ++ KG E++ L L + Sbjct: 560 EQKRLEDKGMIEESIKLAVKLTNLE 584 >gi|324995457|gb|EGC27369.1| DNA primase [Streptococcus sanguinis SK678] Length = 602 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ + L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRSRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|315038508|ref|YP_004032076.1| DNA primase [Lactobacillus amylovorus GRL 1112] gi|325956924|ref|YP_004292336.1| DNA primase [Lactobacillus acidophilus 30SC] gi|312276641|gb|ADQ59281.1| DNA primase [Lactobacillus amylovorus GRL 1112] gi|325333489|gb|ADZ07397.1| DNA primase [Lactobacillus acidophilus 30SC] gi|327183704|gb|AEA32151.1| DNA primase [Lactobacillus amylovorus GRL 1118] Length = 610 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 148/639 (23%), Positives = 277/639 (43%), Gaps = 49/639 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEEFINEVRSNVNIVDIISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A + +P L+R+ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDNLTFPESVERVAEFAHIAMPQGYGNN--DGSKMNPLMRMH 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+H L +R Y +R +D ++ F +GYAP L +LR KG+ + Sbjct: 117 KDAAEFYHRVLLTTKAGERGMQYAQKRQLDQKVLDHFNIGYAPKEDNVLITYLRGKGYQD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 +++ ++GL ++ + +DRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 177 DELQKSGLFVESKDG-RLFDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + S +IL EGYMDV++ +AG+ + ++S+G Sbjct: 236 SIFTKSKVLFHFAEAKKAAR----------SEQHLILYEGYMDVIAAYKAGISSGIASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL +++ I++ +DGD PG+ A +A + + V+L DP Sbjct: 286 TSLTDDQIYLLRRVTTNIIINYDGDPPGIHAEERAARMFNKAGNFNLGI--VVLPDNLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + + + +R + + N E+ I +++ Sbjct: 344 DEYVKKYGAEKYQNEVNGAKTPTEFFLERLAKKYNLNNDREKITYLDEAVKEIAQVRNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + + Q + R + H Q+ S+ + Sbjct: 404 ERDMYIEQLARNAQVSSASLKANLARELRRNNRAKSHMRQQSNYSAPTPSTDEMQPSFES 463 Query: 480 PS------------LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 R+ LL I+ + + + + + + ++L Sbjct: 464 AETATIQQTAGQRHPRQVRLLYLFIHSQQAQKYLQE--GNFHFPDKDFEELAQLWIKYKE 521 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + E+ L + DA + + + I ++ + Q + Sbjct: 522 THDNPQIDGFLDFIPEQ--------LQGIIVDAEMANMPKDFTIQEINEYVQS-----LQ 568 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 R + + E+ Q+ K + ++ L + E+ Sbjct: 569 KRNIYSRLNELNNQLQDAMRKQDRDECLRLTQKIIELKR 607 >gi|225076459|ref|ZP_03719658.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens NRL30031/H210] gi|224952138|gb|EEG33347.1| hypothetical protein NEIFLAOT_01505 [Neisseria flavescens NRL30031/H210] Length = 590 Score = 354 bits (908), Expect = 3e-95, Method: Composition-based stats. Identities = 187/629 (29%), Positives = 296/629 (47%), Gaps = 48/629 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLHEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ ++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELIKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q +++ Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN PA +L D + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + Q+ + E + + G ++ L K Q Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQI 561 Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623 E ++++ I + E L++ Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590 >gi|260912697|ref|ZP_05919183.1| DNA primase [Pasteurella dagmatis ATCC 43325] gi|260633075|gb|EEX51240.1| DNA primase [Pasteurella dagmatis ATCC 43325] Length = 582 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 186/631 (29%), Positives = 299/631 (47%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I LI V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRTFIDDLLAKTDIVELINSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDL 117 Y+CF C G+ +SFL FIE+++ LA + G+ +P + + + + +L Sbjct: 59 YHCFGCGAHGNAISFLMEYDKLEFIEAIEELAGMLGLEIPRENKPHFNNKQINYQTKRNL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L++ +F+ L + YL +RG+ S I F++G+ P+S ++ +H + Sbjct: 119 YELMQTIAEFYQQQLAQHIPAQS--YLQQRGLSSEIIARFQIGFVPNSFDAVLQHFGRSN 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++K+ + G+L YDRFR+R++FPIR RG+ IAFGGR L E KYLNSP Sbjct: 177 EDQQKLFDLGMLSRN-EQGKIYDRFRHRIMFPIRDRRGRTIAFGGRVL-GDEKPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +HKG LY + AL + + +++VEGYMDV++L Q GV V+S Sbjct: 235 ETATYHKGNELYGLYEALQ----------KNETPEMLLVVEGYMDVVALAQFGVDYAVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T Q++LL++ + + + C+DGD G AA++A + L +L G ++ F+ L GE Sbjct: 285 LGTATTAEQIQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFIFLPDGE 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSFIR YGK+ FE+ I ++L L + L+ T F+T + + +L I I Sbjct: 345 DPDSFIRQYGKSGFEEYIQKALSLSEFLFSSLTPQVDFSTKEGKTKLAALAVPLIKKIPG 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR + +L L Q + K +++ + K Sbjct: 405 AMLRLSLRNTLAQKLGILDQAQLENLIPTHSEIKTSSQPQAVKRTPM------------- 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q L +R N L+ L + E+ +I Sbjct: 452 -------RVLIALLLQNPELAQLVP-NLTPLRVLNESGLDLFEKLTALCQEKIGITTGQI 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + + L+ L +W E + + ++ L Y F+L+ R+ + Sbjct: 504 LEYWRDSEYSKALEILA-------MWDHLVE--EEQIEENFKATLR-YFYFQLVEREIDS 553 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 + IA+ A+G + L +L + + Sbjct: 554 L---IAKDRAEGLSVNERQKLTQLLLKKQQK 581 >gi|145589879|ref|YP_001156476.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048285|gb|ABP34912.1| DNA primase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 645 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 179/666 (26%), Positives = 284/666 (42%), Gaps = 72/666 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++GQ+V + N Y CPFH EK+PSF + +K FY Sbjct: 4 IPQSFIADLLNRVDIVDVVGQHVKLKKAGAN-----YQGLCPFHSEKSPSFSVSPTKQFY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C G +SF+ G +++S++ LA AG+ +P + +++ L + Sbjct: 59 HCFGCGAHGSAISFMMEYSGLGYVDSIEELARSAGLDVPREERAANDVARQQQAMALSEV 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A D++ LK R YL RG+ + + LGYAPD L E Sbjct: 119 MSSAADWYRQQLKGN--TRAVEYLKGRGLTGEIAKRYSLGYAPDGWQGLEAVFGPYSNDE 176 Query: 181 EKI--IEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +E GL+I G+ YDRFR+R++FPIR+ +GQ I FGGR L +GE KYL Sbjct: 177 VAKTLVEGGLIIQGEQAEGAPVKRYDRFRDRVMFPIRNPKGQTIGFGGRILDQGEP-KYL 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF KG LY F A ++ ++++ EGYMDV++L Q G N Sbjct: 236 NSPETPLFSKGNTLYGLFEARQAIRAQ----------EYVLVCEGYMDVVALAQLGFPNA 285 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T +R+L + + RIV FDGD G RAA +A++ L + + F+ L Sbjct: 286 VATLGTACTANHVRMLLRQTDRIVFSFDGDSAGQRAAQRALEACLPLMSDDKEIRFLFLP 345 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDS++R YG AFEK+I E++ + +K +E TP+ RA K + Sbjct: 346 TEHDPDSYVRAYGAPAFEKVIKEAMSISSFFFKIASEGHELTTPEGRAHTHHAAKPLLLS 405 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQK-------------------YITEHSGYGRYWKKNAR 455 + LR + + R + T+ + R Sbjct: 406 MPPIALRTQILRELAIRTNTTPAELEAFCGLTVVPAPVQKQAYQPTQARSQNNFSNTGNR 465 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-----ELADIRY 510 S+ + + K P+ +L LI P + + L Sbjct: 466 QGAPWQASKGSAKRVAQNIEPPKAPTDLAEQMLRVLIQFPHLGKALDGNKRTLALKAAEQ 525 Query: 511 DNNELQKLWSFLFSDF-------------VEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + L L S +L L + L ++V Sbjct: 526 RSTKAHALMQDLLSQCDLVELVPGDAGKPASVGAGSFAMFQDQLSRSELAPLYEVLRKRV 585 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGEAEKTAI 616 D+ L + + D+ +++ L ++ EI ++++ TA + + + Sbjct: 586 MDSDL---DLDGAVADLDGAFKK-----LELTHLKQEMTEITQRLSGGTATEQDRARYRE 637 Query: 617 LISILH 622 L L Sbjct: 638 LGEKLK 643 >gi|260893572|ref|YP_003239669.1| DNA primase [Ammonifex degensii KC4] gi|260865713|gb|ACX52819.1| DNA primase [Ammonifex degensii KC4] Length = 611 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 172/628 (27%), Positives = 286/628 (45%), Gaps = 47/628 (7%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P +F+K++L I L+G+YV R+ N Y CPFH E+TPSF + Sbjct: 1 MRGYVPPEFVKEVLDRTDIVALVGEYVRLKRQGKN-----YVGLCPFHAERTPSFTVSPE 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTD 116 K F+YCF C V GD L FL F+E+++RLA AG+ LP + + + Sbjct: 56 KQFFYCFGCGVGGDALKFLMLQEKLDFLEALERLALRAGLSLPSQSRDPAWLARRRELEE 115 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L ++ +FF SL R + YL+ERG+ F LGYAP +L +LR + Sbjct: 116 GEELNRLSLEFFTASLWGERGEPARRYLEERGVSEEIARRFSLGYAPPEEEALLRYLRAR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G ++E ++ GL ++ DRFR RLIFPI +G+V+ FGGR L KYLNS Sbjct: 176 GITKEAAVKWGLASRT-SAGRVVDRFRGRLIFPIFDPQGKVVGFGGRALVSYLQPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF+K LY + A + ++ ++ F +LVEGY+D ++L Q G V+ Sbjct: 235 PETPLFNKRNELYGLYQAKDAIR----------AAGFAVLVEGYLDAITLHQFGFGYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+LT+ Q+RLL + + ++ + +D D G A ++ +D+ G V V L +G Sbjct: 285 SLGTSLTQEQVRLLSRYTGKVYIAYDSDTAGEAATWRGLDI---LAGAGLEVLVVELPQG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD F+R G A+E + +LPL++ K+ D + + L + ++ Sbjct: 342 KDPDEFLRALGPAAWEASLASALPLLEYKGKKLMAGGLVTARD-KLKALRALLPNLACLR 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R + + ++ E + + R + K + + Sbjct: 401 TLPEREEGIRLVSRITGLSWEVVRDELLRFTGEEEVTTRLKSDKS------AKNKHEALE 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 S+ E LL L P IL E + + + + + ++S L + P Sbjct: 455 SRACFAAERGLLQALFCRPEILAEVEEAGGEELFTHPPCRAVYSALKEALAAGEDISPTH 514 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL E AG+ E+ ++ L + R L+ ++++ Sbjct: 515 LASRLPEEALDAA----------AGILVGEEESPP------WKDCLR-FLRMNLVRQKRK 557 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624 ++ +++ A+G+ E+ + L + Sbjct: 558 QLAGKLSLAEARGDEEEVRRCLEELQAL 585 >gi|150015738|ref|YP_001307992.1| DNA primase [Clostridium beijerinckii NCIMB 8052] gi|149902203|gb|ABR33036.1| DNA primase [Clostridium beijerinckii NCIMB 8052] Length = 596 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 167/633 (26%), Positives = 291/633 (45%), Gaps = 38/633 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ + I ++I + V + N + CPFH++K+PSF + K Sbjct: 1 MQISEEVLERIKEQNDIVDIISEDVRLKKSGRN-----FMGLCPFHNDKSPSFSVSSEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFSC G+ L+F+ +FIE+ + LA A +PL + D + + + L ++ Sbjct: 56 IYKCFSCGEAGNVLTFVMKYKKLTFIEAAKYLADKANIPLQINDNENSAVSRKKEFLYKV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ +L+ K Y +RGI I+ F LGY+ DS + L +LR KG+ + Sbjct: 116 NVETARYYFANLQRI--KMAKEYFLKRGIKEETIKRFGLGYSQDSWHGLTNYLRTKGYKD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGL+ + S YD+FRNR++FP+ RG+VI FGGR L KYLNSPET+ Sbjct: 174 NLLLEAGLISKSEKSGNVYDKFRNRVMFPVFDVRGKVIGFGGRVL-DDSKPKYLNSPETM 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NLY A+ K +II+VEGYMD++SL Q+G+ NVV+SLGT Sbjct: 233 IFQKGINLYGLNFAIKNKLK----------EDYIIIVEGYMDLISLHQSGITNVVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q RLL + ++++ +D D G A + +++ G V +++ G+DPD Sbjct: 283 ALTVNQARLLKRYVNKVIISYDADLAGQTATLRGLEI---LRGAGFDVKVLIVPDGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R +GK +F KL E+LPL++ K+ E + N+ ++ E + + + Sbjct: 340 EFVRNHGKESFLKLANEALPLIEYRIKKAAEGINLNSGNDLVEYGEKFAEILADL-NPIE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S +K ++K + K + Sbjct: 399 KDVYIRKISEETAIKEQALYDLLSQVITKKQKEDNFVNKK-------EYFGTKLYVEPAY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ALL + E + + K++S + E I Sbjct: 452 LKAERALLKLMFKD-EFYDEIKSSIKSGDFVIESHNKIYSLILQGKSEDTN-DIGNIESY 509 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + R + ++R+ + + + + Y + + +K L Q E+++K Sbjct: 510 VESRCDDIESSKELTKIREHEILDF---TDRERLIKDYLKEVRGFK----LKLQIEDLKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + +G+ E++ + L ++ + + E Sbjct: 563 KQNRFEKEGKIEESIKIAIELTKLSEALKKGER 595 >gi|282854098|ref|ZP_06263435.1| DNA primase [Propionibacterium acnes J139] gi|282583551|gb|EFB88931.1| DNA primase [Propionibacterium acnes J139] Length = 617 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 4 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 60 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 120 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 235 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 284 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 401 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R ++ P + S + Sbjct: 402 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIVPPPKSEQGSGI 460 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 461 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 515 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 516 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 616 >gi|314923071|gb|EFS86902.1| DNA primase [Propionibacterium acnes HL001PA1] gi|314966841|gb|EFT10940.1| DNA primase [Propionibacterium acnes HL082PA2] gi|314981183|gb|EFT25277.1| DNA primase [Propionibacterium acnes HL110PA3] gi|315092003|gb|EFT63979.1| DNA primase [Propionibacterium acnes HL110PA4] gi|315093238|gb|EFT65214.1| DNA primase [Propionibacterium acnes HL060PA1] gi|327327667|gb|EGE69443.1| DNA primase [Propionibacterium acnes HL103PA1] Length = 623 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVNQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R ++ P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSR-ARRQHRSEPQLTIVPPPKSEQGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|289425170|ref|ZP_06426947.1| DNA primase [Propionibacterium acnes SK187] gi|289427215|ref|ZP_06428931.1| DNA primase [Propionibacterium acnes J165] gi|295130518|ref|YP_003581181.1| DNA primase [Propionibacterium acnes SK137] gi|289154148|gb|EFD02836.1| DNA primase [Propionibacterium acnes SK187] gi|289159684|gb|EFD07872.1| DNA primase [Propionibacterium acnes J165] gi|291376847|gb|ADE00702.1| DNA primase [Propionibacterium acnes SK137] Length = 617 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 4 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 60 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 120 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 180 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 235 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 284 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 285 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 341 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 342 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 401 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 402 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 460 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 461 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 515 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 516 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 568 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 569 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 616 >gi|50842441|ref|YP_055668.1| DNA primase [Propionibacterium acnes KPA171202] gi|50840043|gb|AAT82710.1| DNA primase [Propionibacterium acnes KPA171202] gi|313772425|gb|EFS38391.1| DNA primase [Propionibacterium acnes HL074PA1] gi|313792225|gb|EFS40326.1| DNA primase [Propionibacterium acnes HL110PA1] gi|313801826|gb|EFS43060.1| DNA primase [Propionibacterium acnes HL110PA2] gi|313807436|gb|EFS45923.1| DNA primase [Propionibacterium acnes HL087PA2] gi|313809943|gb|EFS47664.1| DNA primase [Propionibacterium acnes HL083PA1] gi|313813019|gb|EFS50733.1| DNA primase [Propionibacterium acnes HL025PA1] gi|313818481|gb|EFS56195.1| DNA primase [Propionibacterium acnes HL046PA2] gi|313820244|gb|EFS57958.1| DNA primase [Propionibacterium acnes HL036PA1] gi|313822946|gb|EFS60660.1| DNA primase [Propionibacterium acnes HL036PA2] gi|313825125|gb|EFS62839.1| DNA primase [Propionibacterium acnes HL063PA1] gi|313827694|gb|EFS65408.1| DNA primase [Propionibacterium acnes HL063PA2] gi|313830274|gb|EFS67988.1| DNA primase [Propionibacterium acnes HL007PA1] gi|313834075|gb|EFS71789.1| DNA primase [Propionibacterium acnes HL056PA1] gi|313838652|gb|EFS76366.1| DNA primase [Propionibacterium acnes HL086PA1] gi|314925131|gb|EFS88962.1| DNA primase [Propionibacterium acnes HL036PA3] gi|314960082|gb|EFT04184.1| DNA primase [Propionibacterium acnes HL002PA2] gi|314962883|gb|EFT06983.1| DNA primase [Propionibacterium acnes HL082PA1] gi|314973280|gb|EFT17376.1| DNA primase [Propionibacterium acnes HL053PA1] gi|314975955|gb|EFT20050.1| DNA primase [Propionibacterium acnes HL045PA1] gi|314978287|gb|EFT22381.1| DNA primase [Propionibacterium acnes HL072PA2] gi|314984026|gb|EFT28118.1| DNA primase [Propionibacterium acnes HL005PA1] gi|314990011|gb|EFT34102.1| DNA primase [Propionibacterium acnes HL005PA3] gi|315080727|gb|EFT52703.1| DNA primase [Propionibacterium acnes HL078PA1] gi|315084398|gb|EFT56374.1| DNA primase [Propionibacterium acnes HL027PA2] gi|315085737|gb|EFT57713.1| DNA primase [Propionibacterium acnes HL002PA3] gi|315088844|gb|EFT60820.1| DNA primase [Propionibacterium acnes HL072PA1] gi|315096193|gb|EFT68169.1| DNA primase [Propionibacterium acnes HL038PA1] gi|315105464|gb|EFT77440.1| DNA primase [Propionibacterium acnes HL030PA1] gi|315108410|gb|EFT80386.1| DNA primase [Propionibacterium acnes HL030PA2] gi|327326109|gb|EGE67899.1| DNA primase [Propionibacterium acnes HL096PA2] gi|327332020|gb|EGE73757.1| DNA primase [Propionibacterium acnes HL096PA3] gi|327443223|gb|EGE89877.1| DNA primase [Propionibacterium acnes HL013PA2] gi|327446007|gb|EGE92661.1| DNA primase [Propionibacterium acnes HL043PA2] gi|327448013|gb|EGE94667.1| DNA primase [Propionibacterium acnes HL043PA1] gi|327453060|gb|EGE99714.1| DNA primase [Propionibacterium acnes HL092PA1] gi|328753550|gb|EGF67166.1| DNA primase [Propionibacterium acnes HL020PA1] gi|328760672|gb|EGF74239.1| DNA primase [Propionibacterium acnes HL099PA1] gi|332675353|gb|AEE72169.1| DNA primase [Propionibacterium acnes 266] Length = 623 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 259/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|289423790|ref|ZP_06425585.1| DNA primase [Peptostreptococcus anaerobius 653-L] gi|289155829|gb|EFD04499.1| DNA primase [Peptostreptococcus anaerobius 653-L] Length = 612 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 162/625 (25%), Positives = 279/625 (44%), Gaps = 28/625 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D I ++ I+++I Y+ +N Y CPFH EKTPSF N SK + C Sbjct: 5 KDIIDEVKARNDIADVISDYLKLTPSGSN-----YKGLCPFHHEKTPSFSVNTSKQIFKC 59 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLIEV 123 F C GD ++F+ F++SV+ LA AG+ D K +++ + Sbjct: 60 FGCGAGGDVINFIMRKENLDFMDSVKFLANRAGIEFNTNLDEKTKQRLAKIKRYQEMHTE 119 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 A +F+ L N + Y +RG+D I+ F LGY+PDS SL+ +L KG+S E++ Sbjct: 120 AARYFYSQLDNPNNPA-LKYFLKRGLDVKTIKRFGLGYSPDSWDSLKNYLVSKGYSLEEL 178 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 +AGL+ N YD+FRNR++FPI + VI FGGR L KYLNSP++ LF+ Sbjct: 179 FDAGLVSQNKNKTNYYDKFRNRVMFPIFDYKSNVIGFGGRVL-DDSLPKYLNSPDSELFN 237 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K NLY A + +ILVEGYMD++SL Q G++NVV++LGTALT Sbjct: 238 KRNNLYGLNYARKSI----------GHDKTLILVEGYMDLISLHQFGIKNVVATLGTALT 287 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + Q LL + + ++L +D DD G+ A+ +AI + G + + L +DPD F+ Sbjct: 288 DNQAVLLKRFADNMILSYDSDDAGVNASLRAIGI---LEKQGIKPKVLNLGSYKDPDEFV 344 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G A I ++ ++ + + + + IK + Y Sbjct: 345 RANGMNAMLDRIDTAIEANQFRLDSLRKSYNMDDKKDVIAYIKESSKIVKRIKSPIEKDY 404 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + + +E R N RD K P+ + + Sbjct: 405 YIEYLSSITGTNSDIIRSEFGMTFR----NYPRRDDKKPANTFLHRPQKVSVVEDGSKFI 460 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L+ +++ + +++ + + +K++ + + + + +L + Sbjct: 461 ELNLIRAMLDSRLVRDTVPLKISLEDFSDENSKKIYEKVSNVDNKGIKVSKDG-SIKLED 519 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +++ L + N VD + KR L +Q+E +E + Sbjct: 520 VYSDDIDIDYIKKLGRVKLNVEFNDLNEVDKIINSFMRESSEKRLEELFKQQEILENR-- 577 Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628 + T K +++ + + E+ ++I Sbjct: 578 RKTIKNNSQEAKEVDLEIMEIALKI 602 >gi|332994457|gb|AEF04512.1| DNA primase [Alteromonas sp. SN2] Length = 593 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 163/628 (25%), Positives = 283/628 (45%), Gaps = 45/628 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI DLL + +++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 KIPRDFIDDLLSRTDVVDIVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117 Y+CF C G+ +SFL F+E+++ LA + G+ +P E+K++ Q D Sbjct: 59 YHCFGCGAHGNAISFLMEFDRLEFVEAIEELAKLYGLEVPREKGHLPVVSEEKKQQQQDD 118 Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E FF H LK N + YL RG+ ++ +++GYAPDS +L + + Sbjct: 119 YSLMEQVVRFFQHQLKQNENSGKAIDYLKSRGLSGDIVKQWEIGYAPDSWDALLKTFGKD 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++I+ L+ D YD FR+R++FPIR RG+V+ FGGR L + KYLNS Sbjct: 179 QARVKQLIDLKLVNQNDQGRR-YDFFRDRIMFPIRDKRGRVVGFGGRVL-EDGGPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG L+ F+ A ++ +++VEGYMDV++L Q G+ + Sbjct: 237 PETRIFHKGSELFGFYQARQQNRQL----------DAVLIVEGYMDVVALSQFGINQATA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + +P IV C+DGD G AA++A++ L L G R++F+ L G Sbjct: 287 ALGTATTAEHMQMLVRATPHIVCCYDGDRAGREAAWRALENALPALKDGVRLSFLFLPDG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+ +R GK AF +++ ++PL ++ + + TP+ + L I ++ Sbjct: 347 EDPDTMVRKIGKDAFMEMLDNAMPLSRFFFENQLKTHKVGTPEGKIALRKAAMPLIESVQ 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + + + + + + + + + + S L Sbjct: 407 GDDQKQMLLEELAKHTGEYDRFKLQQDISKANHASSKPAYSANRNQVGKARLSPL----- 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L+ L++ P++ + + + L + + Sbjct: 462 --------RMLIRLLLDSPSLATRCDDVQPSVFEGSDATGMDLLLDIHRYCAQYPQATTA 513 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + +L Q D + Y + A + SR + Sbjct: 514 QLVENFRNHPHSSTIAKLLLQEHLVK---------DEDAERVYSDSFARLLDWHFDSRIE 564 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHE 623 I + Q + E E+ +L+ + Sbjct: 565 TLISRSRVQPLTQVEKEELNLLMKERQK 592 >gi|325290509|ref|YP_004266690.1| DNA primase [Syntrophobotulus glycolicus DSM 8271] gi|324965910|gb|ADY56689.1| DNA primase [Syntrophobotulus glycolicus DSM 8271] Length = 610 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 169/650 (26%), Positives = 298/650 (45%), Gaps = 60/650 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 DFI+++ I +I +YV R N Y CPFH EKTPSF+ N + Sbjct: 4 RISEDFIEEVRQRADIVEVISEYVVLKRAGKN-----YQGLCPFHSEKTPSFNVNPERQM 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ SFL F+E++Q +A G+ LP P+ KKE ++ Sbjct: 59 FYCFGCHTGGNVFSFLMKKNNLPFLEALQEVARRVGMELPERELSPEERKKESMRLRWQE 118 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E++ +F L+ +R Y D R ID + F+LGY DS L + + G Sbjct: 119 IHELSAGYFQKMLEERPEGERGRRYFDGRNIDRDTMRKFRLGYTADSWDGLINEMAKHGI 178 Query: 179 SEEKIIEAGLLIDGDN---SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + ++ EAGL + DN + YDRFR R+IFPI G+ I FGGR L KYLN Sbjct: 179 TPGELSEAGLSVKKDNGDGRISFYDRFRGRVIFPILDVHGKPIGFGGRVL-DDSLPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET FHKG+NLY A ++ + + +L+EGYMDV+++ + G+ N V Sbjct: 238 SPETQFFHKGRNLYGIQTASRGIR----------EAGYSVLLEGYMDVIAVQKVGLFNAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGTALT Q R+L + S R++LC+D D+ G++AA++A ++ + G V + L Sbjct: 288 ASLGTALTRDQARILKRYSSRVILCYDSDEAGVQAAFRAGEI---LINEGLNVQVLKLKG 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPD +++ + K F + + +SL ++ ++ + T +AEL + I I Sbjct: 345 AKDPDEYLQGHSKEEFLQELQKSLSYIEFKYEMLVADAVPETITAKAELIRRMAPDILRI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------- 468 K R Y++ + L + E G + +N +++ Q + Sbjct: 405 KSAAEREGYARFLSLELGLTLEAVKEEIGGIDQKRLENKGYQEIFSQKQDISPHISNTIS 464 Query: 469 ---SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + ++ ++ E LL ++N P + + +EL + + E + ++ + Sbjct: 465 VATNQFIENTIANGAYRAEQILLRLVLNDPDVKNKVQEELGNEFWCLEEHKYIFEAV--- 521 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 P ++ L+++ ++ + + E + D ++ Sbjct: 522 --------PANLNVPAANEDLYALVQKRLAELYELNIDIEKAEFLLKDCINAICESQN-- 571 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +Q ++++ ++ + G+A ++ + E +++S E Sbjct: 572 ------KKQIQDLQVKMIHLENYGDAAGALAVLREIQE------RLKSGE 609 >gi|223041545|ref|ZP_03611746.1| DNA primase [Actinobacillus minor 202] gi|223017640|gb|EEF16050.1| DNA primase [Actinobacillus minor 202] Length = 581 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 179/614 (29%), Positives = 288/614 (46%), Gaps = 55/614 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI DL+ I LI V + +Y ACCPFH EKTPSF + S Sbjct: 1 MKGTIPRSFIDDLIARTDIVELINHRVKLKKAGR-----EYHACCPFHHEKTPSFSVSPS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------K 112 K FY+CF C G+ +SFL F E+++ LAA+ G+ +P + + K Sbjct: 56 KQFYHCFGCGAHGNVISFLMEYDKLEFPEAIEELAALHGLEVPRENLRQSDSRSPQVGYK 115 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + DL L+ T F+ +L+ + YL +RG+ S I F++G+AP++ ++ Sbjct: 116 AKRDLYGLLSEITQFYQQNLQQDIPSQS--YLQQRGLSSEIIARFEIGFAPNAYDAVLRK 173 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + +K+ + G+L + S YD+FRNR++FPIR RG+VIAFGGR + E K Sbjct: 174 FGKNPEEIQKLRDTGMLSES-ESGRIYDKFRNRIMFPIRDKRGRVIAFGGRVM-GDERPK 231 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE+ +HKG LY + AL + ++ +VEGYMDV++L Q GV+ Sbjct: 232 YLNSPESATYHKGNELYGLYQALQ----------VDENPQYLFVVEGYMDVVALAQFGVE 281 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V+SLGTA T Q++ +++++ +I+ C+DGD G AA++A + L +L G ++ F+ Sbjct: 282 NAVASLGTATTGEQIQQMFRVTEQIICCYDGDRAGRDAAWRAFENALPYLYDGRQLKFIF 341 Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L GEDPD+F+R GK+ FE+ L + L D L+ ++ + +++L Sbjct: 342 LPDGEDPDTFVRSQGKSGFEQYLQENAKSLSDFLFDSLLVQVDLSSKEGKSKLASLAIPL 401 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 IN I + LR Y + +L L + +QS Sbjct: 402 INRIPGEMLRVYLRNILGQKLGILDPSQLEALL-------------------PNRLQSKQ 442 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K L+ L+ +P ++ L ++ + L+ L EQ Sbjct: 443 DAPKAQGIKRTPMRLLIALLLQNPDFVKHVPD-LTPLKELDEAGFDLFVELVQVCREQVG 501 Query: 532 FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANI---VDVRQGYQQALALY 585 + + + +L++L D V D L E + + + L Sbjct: 502 VSMGALLEHWRDTPNYTILERLAGWDHLVSDENLEKEFIETLSFLYTKLVEKRVEVLIAK 561 Query: 586 KRFRLLS-RQKEEI 598 +R + LS +K+E+ Sbjct: 562 ERTQGLSDEEKQEL 575 >gi|145640510|ref|ZP_01796094.1| DNA primase [Haemophilus influenzae R3021] gi|145275096|gb|EDK14958.1| DNA primase [Haemophilus influenzae 22.4-21] Length = 593 Score = 354 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|314968039|gb|EFT12138.1| DNA primase [Propionibacterium acnes HL037PA1] Length = 660 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 141/635 (22%), Positives = 252/635 (39%), Gaps = 45/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + ++ ++ + + + + S L + Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609 >gi|167566504|ref|ZP_02359420.1| DNA primase [Burkholderia oklahomensis EO147] Length = 625 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108 +CF C G + FL G +F E+VQ LA AG+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSAGLTVPHEPSPMRGGGGSPGDGYAPPA 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 ASKAVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DHKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR +RLQ F + R Sbjct: 404 FDAKPMLQALPANALRAQIMHMFAERLQIPFDEVAALVEVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L L+ HP I E +L+ + Sbjct: 449 APARQAPARSERRRVTDNEKRALRNLVMHPRIAATLDDESLATLRALPRNGELFDEVIGH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD + ++ +R+ Sbjct: 509 ARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDVAQEGLREQ 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + GE + L L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACRDRLNSLSKR--SAPSSGELAEIKDLHQNLADMKRRL 623 >gi|314987789|gb|EFT31880.1| DNA primase [Propionibacterium acnes HL005PA2] Length = 640 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 141/635 (22%), Positives = 252/635 (39%), Gaps = 45/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + + + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMENTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDPQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + ++ ++ + + + + S L + Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA 609 >gi|254672480|emb|CBA05944.1| DNA primase [Neisseria meningitidis alpha275] Length = 590 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 294/608 (48%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETAAAAADFYAQQLK--FNPTAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF+KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFNKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ + NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGINLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|78063052|ref|YP_372960.1| DNA primase [Burkholderia sp. 383] gi|77970937|gb|ABB12316.1| DNA primase [Burkholderia sp. 383] Length = 638 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 173/654 (26%), Positives = 278/654 (42%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 18 IPHSFLQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 72 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 73 HCFGCGAHGTAIGFLMEHAGLTFPEAVQDLAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 132 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 + T L + A D++ L+ YL RG+ F LGYAPD + Sbjct: 133 SVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 190 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 R + E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 191 AFPDYRDESLVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 250 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 251 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 299 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 300 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDNRTI 359 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G+ AF + + ++PL L ++ + P+ RA+ Sbjct: 360 RFLFLPAEHDPDSYVREFGEEAFSQQVERAMPLSQFLLNEAISGKALDQPEGRAKALFDA 419 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F++ R + Sbjct: 420 KPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRIAAPPRQ------------- 466 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ + E L TL+ HP I + E + +L++ + Sbjct: 467 --APPRSERRRVTDSEKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVDHARA 524 Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 525 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 584 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 585 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 636 >gi|309972317|gb|ADO95518.1| DNA primase [Haemophilus influenzae R2846] Length = 593 Score = 354 bits (907), Expect = 4e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGCGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|325918191|ref|ZP_08180340.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] gi|325535598|gb|EGD07445.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] Length = 582 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 170/631 (26%), Positives = 274/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRDTQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGS--TRAAEYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETTLFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L K + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERAKPMLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + + + R + SLV+ Sbjct: 405 PEGAFGDLMKQELARMTG---------VGASMSAQQSSPKTRPPVRMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + ++ L L + ++ Sbjct: 456 ------------IAILLQQPSLAMSLEGDHDFSGLRLPGIELLME-LLALVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAEREELVALQKLAAQELPGD----------EHSWAIELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDNTDKYEMRELLKALAAL 582 >gi|298369313|ref|ZP_06980631.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314] gi|298283316|gb|EFI24803.1| DNA primase [Neisseria sp. oral taxon 014 str. F0314] Length = 591 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 178/602 (29%), Positives = 289/602 (48%), Gaps = 45/602 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +FI +LL + + ++I + V + N Y ACCPFH EKTPSF + SK FY Sbjct: 2 IPSEFIDELLAKVDVVDIIDEQVPLKKSGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQYLADRVGMTVPQVRGRNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L + A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETVAAAADFYAQQLKFNPAAKE--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + ++++G++I N YDRFR+R++FPIR RGQVI FGGR L + KYLNS Sbjct: 173 PYPNTALVDSGMVI--ANEGKHYDRFRHRIMFPIRDPRGQVIGFGGRVLDNSKP-KYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++ + R I++VEGYMDV++L Q G+ V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAIKDAGR----------ILVVEGYMDVVALSQFGIGYSVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L G ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQTDDIYFCFDGDSAGRKAAWRALENALPQLKDGKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS++R YGK FE L+ +S PL + W ++ + N + +AEL + I Sbjct: 340 HDPDSYVRAYGKAQFEDALLHQSKPLSEYFWDALSDGLNLNMQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L + Q + + + K++ + + K P+ + Q ++ Sbjct: 400 TAPALGFLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPAISVKQPVML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN PA +L + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPEYLPLTGDFACLANLAEMIKSHPQPPSSA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYK--RFRLLS 592 +I + + + L Q+ + ++ + E + + G ++ L K + LL Sbjct: 507 QILEHMRGSPYETALNQIFQSALNSSDEMESGNEEDCESFKIGMKKLLNELKYSQIELLK 566 Query: 593 RQ 594 ++ Sbjct: 567 QK 568 >gi|145630290|ref|ZP_01786071.1| DNA primase [Haemophilus influenzae R3021] gi|144984025|gb|EDJ91462.1| DNA primase [Haemophilus influenzae R3021] Length = 593 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 170/634 (26%), Positives = 289/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F++ + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q + + R E Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQNYR-RLNIQAIERDIE 556 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + IA+ +G + ++ L Q + Sbjct: 557 IL---IAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|327330174|gb|EGE71923.1| DNA primase [Propionibacterium acnes HL097PA1] Length = 623 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 144/654 (22%), Positives = 260/654 (39%), Gaps = 51/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I ++G+YV CPFHDEKTPSF S+G Sbjct: 10 RINEEDIALVRERARIDEVVGEYVTLRHAG----GDSLKGLCPFHDEKTPSFQVTPSRGL 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRL 120 +YCF C GD +SF+ + +F+E+VQRLA GV L ++D E ++ ++ Sbjct: 66 FYCFGCGEGGDTISFVQKIDNLTFVEAVQRLADKVGVQLRIIDDGRPGLEPGLRMQILAA 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF + + ++ RG A F +GYAP + LR+HL KGF+ Sbjct: 126 NEAAAEFFQSQMSTDEGRIAREFVAGRGFSPDAAVQFGMGYAPRDGHVLRDHLMAKGFAP 185 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 + +IE+GL+ D F+ R+++PI+ S V+ FG R + + KY+N+PE Sbjct: 186 KVLIESGLVRSQGW-----DFFQGRVLWPIKDSGKSVLGFGARRVYDDDRLPAKYVNTPE 240 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K LY A + K S ++VEGY DV++ +G+ V++ Sbjct: 241 TPVYKKSHVLYGLDLARANIGKK----------SQAVIVEGYTDVMAAHLSGIDTAVAAC 290 Query: 299 GTALTEYQLRLLWKLSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + RL+ +L ++ FDGD G +AA K ++ Sbjct: 291 GTAFGDDHARLIQRLMGNSGSLNGEVIFTFDGDAAGQKAALKVFRGDNQFS---SQTYVA 347 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP + G A +L+ +PL + ++ + D R Sbjct: 348 VEPTGLDPCDLLMQRGPEAVRELVARRIPLYRYVMEKTVSQFDLDRADGRVAAIRAAAPL 407 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + I+DQ L Y + + + E S R + + P + S + Sbjct: 408 VTSIRDQSLVDGYLRELSQVVGTDVDLVRREVSHTRRQHRSEPQLTIVPPPEPQ-QGSGI 466 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + E L + HP + E++ ++ + Q ++ + + Sbjct: 467 PWPDPADVSLSAERGFLKLALQHPDLFNEEWDQVEVEDLRHPAYQAVFEAVLAV-----P 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +++ E +KQL+ + + + Y +A A R + Sbjct: 522 RGQDRWTEKVSEATPDSQVKQLE-------VALLVEPVLREEPDRDYAEAYAARVRLLSI 574 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + ++ ++ + + + + S L + + + ++I G S Sbjct: 575 TDDIANLKSRLQRTNPNQDRKLYNAMFSDLVTLEA-LRK-----SLIVAGGAAS 622 >gi|183597879|ref|ZP_02959372.1| hypothetical protein PROSTU_01214 [Providencia stuartii ATCC 25827] gi|188022640|gb|EDU60680.1| hypothetical protein PROSTU_01214 [Providencia stuartii ATCC 25827] Length = 581 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 163/595 (27%), Positives = 274/595 (46%), Gaps = 41/595 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +L+ V ++ N + ACCPFH+EKTPSF N + F Sbjct: 4 RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNSERQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 YYCF C G+ + FL F+E+++ L+A+ G+ +P + + + +L + Sbjct: 59 YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYETGTGTSQIELHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+H +L + + YL +RG+ + IE F +G+AP +L + S Sbjct: 119 LMEKINHFYHAALNHPSASKAKDYLSQRGLSADVIEHFSIGFAPVGWDNLLKKFAVNPES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ +AG+L+ ++S +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RKQLDDAGMLV-TNDSGRTYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + A + + +++VEGYMDV++L Q G++ V+SLG Sbjct: 237 DIFHKGRQLFGLYEATQH----------NSELDKLLVVEGYMDVVALAQYGIRYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGREAAWRALENALPYLTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK AFE + ++ L L+ T + RA+ I I + Sbjct: 347 DSLVRKEGKEAFELRMNDAQTLSSFLFDSLVPQVDLKTQEGRAKFSKLAIPLIKQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y +Q + + + + N + K + Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRENAEPVNYQAPKLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P+ + L L+ L ++ + Sbjct: 452 -----RILIALLVQNPSFSEFVPSLEGIAHIQMPGL-SLFQELVDVCRSTPGMTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + F L++L D + + + + AL + + + Sbjct: 506 LYRDNKFASQLEKLATW-NDIEIEEIAEKTFKDALNHLFNSALDERFDYLIAKER 559 >gi|238022115|ref|ZP_04602541.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147] gi|237866729|gb|EEP67771.1| hypothetical protein GCWU000324_02021 [Kingella oralis ATCC 51147] Length = 594 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 169/634 (26%), Positives = 278/634 (43%), Gaps = 52/634 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI DLL I ++I YV + N Y ACCPFH EK+PSF + SK FY Sbjct: 2 IPSSFIDDLLAKTDIVDIIDHYVPLKKSGAN-----YMACCPFHKEKSPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQT 115 +CF C G + F+ G +F E+VQ+LA G+ +P + +++ Q Sbjct: 57 HCFGCGAHGSAIGFIMEHQGLTFPEAVQQLADRVGMSVPHDSNTQPENAAERAARKQQQQ 116 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L ++ A F+ L Y RG+ I + +GYAPD L + Sbjct: 117 TLETAVQAAATFYAQQL--PLSAAAQAYATGRGLSPEIIARYGIGYAPDGWTPLAQVF-- 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + + ++I +G++ID D YDRFR+RL+FPIR+ G +I FGGR L KYLN Sbjct: 173 QPYPNGELIASGMVIDQDG--KQYDRFRHRLMFPIRNISGSIIGFGGRVL-DDSKPKYLN 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGKNLY + A ++ + R I++VEGYMD ++L Q G+ V Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGR----------ILVVEGYMDTVALAQYGIGYAV 279 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T +++L++ + I CFDGD G +AA++A++ L L G ++F+ L Sbjct: 280 AALGTATTAEHIKILFRQTDNIYFCFDGDAAGQKAAWRALENALPQLKDGKSLHFLFLPA 339 Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R +GK FE+ L+ +S PL W T + + +AEL + Sbjct: 340 EHDPDSFVRQFGKERFEEALLHQSRPLSQYFWDALTAGLDLTSQEGKAELVKRAAPHLAQ 399 Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + L Y Q + ++ A+ S R +++ + Sbjct: 400 ITQAPTLAYLLKQNLSEQTGIDPTNLAYLMGQAAPQRHVAAKRYTLPRESFRQPETTTLV 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + TL+ +P + + D ++ L L + Sbjct: 460 QRQ-----------IRTLLLNPQWAEHV--AIPDYLPAGGDIACLL-ALAHSYRSHPSMT 505 Query: 534 PEEIHQRLCERGFGELLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + F + + R + + ++ + + G + + K + Sbjct: 506 AAQAIEHFRATPFATTIDHIFRHALQNQEDLTDSSPEKQQEFQDGIAKLITELK-----N 560 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVH 625 Q +++ ++ Q + K L+ L + Sbjct: 561 HQISQLKHRLTQPDISPDERKRLSLLIVQLLAIK 594 >gi|326779515|ref|ZP_08238780.1| DNA primase [Streptomyces cf. griseus XylebKG-1] gi|326659848|gb|EGE44694.1| DNA primase [Streptomyces cf. griseus XylebKG-1] Length = 643 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 144/668 (21%), Positives = 266/668 (39%), Gaps = 62/668 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + LI Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +L++ + +L ERG D A F++GY+P L +LR KGFS Sbjct: 120 AHQAAAEFYVRALESPEAEIGRAFLAERGFDQDAAAHFRVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL D DRFR RL++PI + G ++ FG R L ++ KYLN+PE Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G + L+ PL + ++ TP RA + Sbjct: 345 PDGMDPCDLRLAKGDDSVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471 IK ++ + + + L Q+++ +W ++ + Q Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLAHWARSKGGDHGDRGGRGGPQGRGPR 464 Query: 472 -----------------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 L E LL + PA++ + + Sbjct: 465 GGAPQQPAPAPAPGFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524 Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + ++ + + L+ +L +V + Sbjct: 525 YAAVRQCIEEAGGAEQGIADNREYLVAVMDAAPDNTVRNLVTELAVEVFHGRI------- 577 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + Y ++ R R + R+ ++++ + ++ + + A + + + Sbjct: 578 ----IDETYAGMQLVHVRLRAVDRRIDDVQGSLVRLGSHVAPQDLAAAQNEVWVLQQYAQ 633 Query: 630 QIESQEAM 637 + + A Sbjct: 634 TLRAHGAA 641 >gi|182438859|ref|YP_001826578.1| DNA primase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467375|dbj|BAG21895.1| putative DNA primase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 643 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 144/668 (21%), Positives = 266/668 (39%), Gaps = 62/668 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + LI Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAKAGITLRYEEGGYNPSHQRGERIRLIE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A +F+ +L++ + +L ERG D A F++GY+P L +LR KGFS Sbjct: 120 AHQAAAEFYVRALESPEAEIGRAFLAERGFDQDAAAHFRVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL D DRFR RL++PI + G ++ FG R L ++ KYLN+PE Sbjct: 180 DKELITSGL--SQDGRRGPIDRFRGRLMWPISDTAGDIVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TPIYKKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L R++ FDGD G +AA +A + + Sbjct: 288 GTAFGNDHIKILRRLLMDNGSARVIFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIA 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G + L+ PL + ++ TP RA + Sbjct: 345 PDGMDPCDLRLAKGDDSVRDLVEPRTPLFEFALRQIVGRYDLETPAGRAAALDEAAAVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471 IK ++ + + + L Q+++ +W ++ + Q Sbjct: 405 KIKTSSVQREVAVQLAGLVGILDQEFVVHRVAQLAHWARSKGGDHGDRGGRGGPQGRGSR 464 Query: 472 -----------------VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 L E LL + PA++ + + Sbjct: 465 GGAPQQPAPAPAPGFSGPALNLRSPAHRTERELLKLALQKPALVSPAFDAYGVDEFTAPP 524 Query: 515 LQKLWSFLFSDFVEQKYFLPE-----EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + ++ + + L+ +L +V + Sbjct: 525 YAAVRQCIEEAGGAEQGIADNREYLVAVMDAAPDNTVRNLVTELAVEVFHGRI------- 577 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + Y ++ R R + R+ ++++ + ++ + + A + + + Sbjct: 578 ----IDETYAGMQLVHVRLRAVDRRIDDVQGSLVRLGSHVAPQDLAAAQNEVWVLQQYAQ 633 Query: 630 QIESQEAM 637 + + A Sbjct: 634 TLRAHGAA 641 >gi|332363115|gb|EGJ40902.1| DNA primase [Streptococcus sanguinis SK355] Length = 602 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKELISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETVGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ R + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLRHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEASTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +++HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFFFDSEELQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|240112699|ref|ZP_04727189.1| DNA primase [Neisseria gonorrhoeae MS11] gi|254493554|ref|ZP_05106725.1| DNA primase [Neisseria gonorrhoeae 1291] gi|260440744|ref|ZP_05794560.1| DNA primase [Neisseria gonorrhoeae DGI2] gi|268594614|ref|ZP_06128781.1| DNA primase [Neisseria gonorrhoeae 35/02] gi|268597060|ref|ZP_06131227.1| DNA primase [Neisseria gonorrhoeae FA19] gi|268598760|ref|ZP_06132927.1| DNA primase [Neisseria gonorrhoeae MS11] gi|268601119|ref|ZP_06135286.1| DNA primase [Neisseria gonorrhoeae PID18] gi|268681917|ref|ZP_06148779.1| DNA primase [Neisseria gonorrhoeae PID332] gi|268684131|ref|ZP_06150993.1| DNA primase [Neisseria gonorrhoeae SK-92-679] gi|291044059|ref|ZP_06569775.1| DNA primase [Neisseria gonorrhoeae DGI2] gi|226512594|gb|EEH61939.1| DNA primase [Neisseria gonorrhoeae 1291] gi|268548003|gb|EEZ43421.1| DNA primase [Neisseria gonorrhoeae 35/02] gi|268550848|gb|EEZ45867.1| DNA primase [Neisseria gonorrhoeae FA19] gi|268582891|gb|EEZ47567.1| DNA primase [Neisseria gonorrhoeae MS11] gi|268585250|gb|EEZ49926.1| DNA primase [Neisseria gonorrhoeae PID18] gi|268622201|gb|EEZ54601.1| DNA primase [Neisseria gonorrhoeae PID332] gi|268624415|gb|EEZ56815.1| DNA primase [Neisseria gonorrhoeae SK-92-679] gi|291012522|gb|EFE04511.1| DNA primase [Neisseria gonorrhoeae DGI2] Length = 590 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I +I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETIDRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|327461510|gb|EGF07841.1| DNA primase [Streptococcus sanguinis SK1] Length = 602 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V + ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEKKRRME 602 >gi|301155441|emb|CBW14907.1| DNA primase [Haemophilus parainfluenzae T3T1] Length = 594 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 178/637 (27%), Positives = 295/637 (46%), Gaps = 57/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF ++ K F Sbjct: 4 SIPRQFIDDLLTKSNIVDVINARVKLKKAGR-----DYQACCPFHHEKTPSFTVSEKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQT 115 YYCF C KG+ +SFL F+E+V+ LAA AG+ +P + + + Sbjct: 59 YYCFGCGAKGNAISFLMDYDKLEFVEAVEELAASAGLEVPYEKRPNQFGNKPDVSYQTKR 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L++ F+ L + YL +RG+ I+ F++GY P++ ++ + Sbjct: 119 NLYDLMQEIALFYQSQL--PLNIPAQSYLQQRGLSPEIIDRFQIGYVPNAMDTVLRQFGK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++K+ + G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLN Sbjct: 177 NREEQKKLFDLGMLSRNDRG-NVYDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPETI +HKG LY + AL + +++VEGYMDV++L Q GV V Sbjct: 235 SPETITYHKGNELYGLYEALQI----------NDEPEKLLVVEGYMDVVALAQFGVNYAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGT+ T Q++LL++ + +++ C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 285 ASLGTSTTSEQIQLLFRSTEQVICCYDGDRAGRDAAWRALENALPYLEDGRQIKFIFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD++IR YGK FE+ I ++ L + L+ + F+T + R +L I I Sbjct: 345 GEDPDTYIRQYGKEKFEEYIDQAQSLTEFLFAHLSPQVDFSTQEGRGKLVALAAPLIRQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 LR + +L Q + + QK + M Sbjct: 405 PGDMLRLSLRNMLAQKLGIFDQSQLESLIPNQIGKAEPKPKTPQKTIKKTPM-------- 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ L+ + ++ + + +L L + E++ Sbjct: 457 ---------RVVISLLLQNSQLVNRISD-VGLQALKHEAGYELLEKLTALCREREGITTG 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 +I + + F + L+ L + + D+ A + R + + Sbjct: 507 QILEYFRDTEFSKPLEILASW-----------DHLLDDLE--IINAFSQNYRRLNIQAIE 553 Query: 596 EEIEKQIAQVTAKGEAEKTAILI-SILHEVHIQIHQI 631 +IE IA+ A+G ++ ++ ++L Q Q+ Sbjct: 554 RDIEMLIAKERAEGLTDQERAILVNLLKGKEEQKKQL 590 >gi|327489366|gb|EGF21159.1| DNA primase [Streptococcus sanguinis SK1058] Length = 602 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 146/634 (23%), Positives = 269/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ A++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARDYLYQRGLTDDALKHFQIGLAPNEGNYLHKSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PNEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|327468858|gb|EGF14330.1| DNA primase [Streptococcus sanguinis SK330] Length = 602 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 143/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K + + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------NHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----KDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +++HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFAFDSEELQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|163815581|ref|ZP_02206954.1| hypothetical protein COPEUT_01756 [Coprococcus eutactus ATCC 27759] gi|158449218|gb|EDP26213.1| hypothetical protein COPEUT_01756 [Coprococcus eutactus ATCC 27759] Length = 600 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 163/634 (25%), Positives = 266/634 (41%), Gaps = 55/634 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I ++L I ++IG Y ++ +N Y ACCPFH EKTPSF N K Y+CF C Sbjct: 2 INEVLSRNDIVDVIGSYASLKKKGSN-----YEACCPFHHEKTPSFKVNREKQMYHCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIEVAT 125 V G+ +F+ +F E+V+RLA AG+ LP ++ +E+ + L + + A Sbjct: 57 GVGGNVFTFVMEYENLNFPEAVERLAERAGIQLPEKSMSAQERSREQYKIALKEMNKTAA 116 Query: 126 DFFHHSLKNARDKRLHYYLDE--RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 +FH+ LK+ + Y RG+ I F LGYA R L +L+ KG+++E++ Sbjct: 117 AYFHYILKHGQRGEKAYEYFRDTRGLTDETINRFALGYADIYRDDLYRYLKNKGYTDEQL 176 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 +GL +D D+F NR + PI G+VIAFGGR L KY+N+ +T +F Sbjct: 177 KNSGL-VDITEKDGGVDKFWNRAMIPILDINGKVIAFGGRVL-GDGKPKYINTSDTAVFD 234 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K L+ A +K I EGYMDV+S+ QAG N V+SLGTA T Sbjct: 235 KSHTLFAMNIARRSRRKG------------FICCEGYMDVISMHQAGFDNAVASLGTAFT 282 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ + + + L +D D G+ A K I + G + + +DPD FI Sbjct: 283 FGHANIIKRYADEVYLAYDSDGAGVAATKKVIAI---LREVGVGARVINMRPYKDPDEFI 339 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G AFE I ++ + L + +E + P ER + + + I++I+D R Sbjct: 340 RNLGSEAFEDRIKKAESGMMFLARIYSEEYDQSDPGERTKFQNQVAKEISYIEDPLERNN 399 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---------RHRDQKGPSQRLMQSSLVKG 474 Y AI + YG P + G Sbjct: 400 YIDAIARAYVINRDALAEKVHDYGVAGTPKPDVVEREERRLEEQTTNPDSGTGSGTASHG 459 Query: 475 KLSKK--PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + + LL L+N P++ ++ +++ +D + + LFS + EQ Sbjct: 460 RQGRDVGENKTARLLLTWLVNEPSLFEKLDGVISEEDFDPGVFRTVAEKLFSQYREQHKV 519 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 P + + L+ + + + I DV + Sbjct: 520 EPAIVVNTFQDVEEQRLVASMLQTDLSIDMTEEEISGAITDVVKKI-------------- 565 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + I+K + ++ + K LI ++ Sbjct: 566 -KLASIKKHL---ESENDITKVQQLIKDRKKIEK 595 >gi|319425508|gb|ADV53582.1| DNA primase [Shewanella putrefaciens 200] Length = 574 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 177/627 (28%), Positives = 298/627 (47%), Gaps = 55/627 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI +++ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLI-ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + +V C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE L+ ++ L + L+ +++ L I I+D Sbjct: 344 PDSMVRKIGKEAFETLMGSAIALPEFLFDTLATKY----GTDKSNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K + KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQTKTVAKQGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L D ++ ++ Sbjct: 448 ------RLAIALLVQHPQLGLGLPPQPALNHLQMPGIDL--LPLLLDLTREQRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFRDNPHSGALHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 + Q K E + LIS++ ++ Sbjct: 550 --SLKQTHTKEEKIQLQKLISVMKGLN 574 >gi|172062814|ref|YP_001810465.1| DNA primase [Burkholderia ambifaria MC40-6] gi|171995331|gb|ACB66249.1| DNA primase [Burkholderia ambifaria MC40-6] Length = 622 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 179/654 (27%), Positives = 282/654 (43%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGDYPAPVSK 116 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--- 168 + T L ++ VA D++ L+ YL RG+ F LGYAPD + Sbjct: 117 SVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLET 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RFLFLPSEHDPDSYVREFGAQAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F++ R ARH + +R+ Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIA-APARHAPPRSERRRVTD 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S E L TL+ HP I + E + +L++ + Sbjct: 463 S--------------EKRALRTLVMHPRIASQLDDEQLATLRALPRIGELFAEVVEHARA 508 Query: 529 QKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 509 LGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQERI 568 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 620 >gi|148827723|ref|YP_001292476.1| DNA primase [Haemophilus influenzae PittGG] gi|148718965|gb|ABR00093.1| DNA primase [Haemophilus influenzae PittGG] Length = 593 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIAKFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|116492862|ref|YP_804597.1| DNA primase [Pediococcus pentosaceus ATCC 25745] gi|116103012|gb|ABJ68155.1| DNA primase [Pediococcus pentosaceus ATCC 25745] Length = 620 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 166/636 (26%), Positives = 287/636 (45%), Gaps = 45/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P D I D+ + I++++G+YV + N + CPFHDEKTPSF ++SK + Sbjct: 5 IPEDVIDDVRTSVDIADVVGRYVQLRKAGKNL-----FGVCPFHDEKTPSFSVSESKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119 +CFSC G+ FL L SF ESV+R+A +PL K KK Q+ LI Sbjct: 60 HCFSCGRGGNVFKFLMDLENLSFPESVRRVAEFGNIPLDQSYFKSTKKSSYTSEQSALID 119 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A++ F H L + YL +RG+ I+ F +G+A L ++ Sbjct: 120 LYEKASELFSHILLNTKLGEDALQYLKKRGMTEDDIKNFDIGFAAPEDNLLLSFFKEHKI 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSP 237 + + E+GL I+ + T DRF NR+IFPI+ + G+++AF GR+L K + KYLNSP Sbjct: 180 DQHLMAESGLFIES-ENQTLRDRFFNRIIFPIKDTNGKIVAFSGRSLVKDKNHPKYLNSP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F+KGK LYNF A + + +IL EG+MDV++ +A V+N +++ Sbjct: 239 ETSIFNKGKVLYNFSQARSEI----------IQQKTVILYEGFMDVIAAHRAAVKNGIAT 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE + + +++ R+++CFDGD PG +A +AI+L+ +++ V + Sbjct: 289 MGTSLTEDHINAIKRVADRVIICFDGDAPGQKAIARAIELLR--QSSDLQISVVFIPDNL 346 Query: 358 DPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD ++ G AF+ L+ ++ L K + + +++ E I+ +K Sbjct: 347 DPDEYVNQRGTAAFQNLMQQTGESSTSFLLKYDRTGLNLANENDQLEYLKRALKRISSLK 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--- 473 D + Y + D + + + +A + + S + Sbjct: 407 DALEQDLYLNQLSDEFKIDKRDLKDQLRESVADRIAHAPKQFELEASMPPPPPEAMGDQP 466 Query: 474 ------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 K K + E LL +N+ + + Q L + + N +L+ ++ Sbjct: 467 VFNQNIQKKLSKIDISEYRLLARALNNHDVWLK-LQSLPNFYFPNEKLETIYVLASGYLE 525 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + L E ++ ++ + + Q L++ + Sbjct: 526 KNHEYNVADFMDYLKEDELQAVVADIESI-----------NLSPEFTEEEIQDYLSVIEN 574 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 F LS Q ++ + + T G E L L Sbjct: 575 FAPLSEQISNVKLDLDEATRLGNKELQQQLTLKLIA 610 >gi|190572509|ref|YP_001970354.1| DNA primase [Stenotrophomonas maltophilia K279a] gi|190010431|emb|CAQ44039.1| putative DNA primase [Stenotrophomonas maltophilia K279a] Length = 579 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 181/625 (28%), Positives = 277/625 (44%), Gaps = 50/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDDLLARTDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P +P+ +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRNENPRSPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ A FF +L+++ + YLD RG+D F++GYAPD LR+ L + Sbjct: 118 LDAAARFFQKNLESSD--KARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + AGL D YD+FR+R++FPI RG+VIAFGGR K + KYLNSPET Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V++LGT Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T LL++ +P + CFDGD G RA +KA++ VL + G + F+ L GEDPD Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G AF + + ++ PL + T + T D +A L K + I D Sbjct: 345 TIVRKEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Q + G + + R + Q + + SLV+G Sbjct: 405 GDLMKQQLAQLTG---------LGGTAQATRAPMPQRQPQRTIQPVAKRSLVRGA----- 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P++ + ++ L ++ + + Sbjct: 451 -------IAVLLQQPSLALTLGGKHHFQGLRLPGVEL-LLELLGLVEQRPDISTGALLEH 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 R L L Q S T E A+A ++ L+ R +E + K Sbjct: 503 FDGREEQASLHTLAAQTLPGTEASWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 Q Q + + L+ + Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578 >gi|254253608|ref|ZP_04946925.1| DNA primase [Burkholderia dolosa AUO158] gi|124898253|gb|EAY70096.1| DNA primase [Burkholderia dolosa AUO158] Length = 624 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 178/656 (27%), Positives = 282/656 (42%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-------------DPKIEK 109 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGDYPAPV 116 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 + + T L ++ VA D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKSRGLTGEIAARFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFPDYRDESLVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLG 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 SGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAISGKALDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRL F++ R RH + +R+ Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALCDVDSRIA-APLRHAPARSERRRV 462 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S E L TL+ +P I + E + +L++ + Sbjct: 463 TDS--------------EKRALRTLVMYPRIALQLDDEQIATLRVLPRIGELFAEVVDHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD L + +A R+ Sbjct: 509 RALGDGAEFRLLSDVLRTSSNAATYEEIFREILDYDENVRDLLLQNPDDDAAAERQREQE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLDRLARQ--SALTSEELAELTELNQQRTDMKRRL 622 >gi|59801381|ref|YP_208093.1| DNA primase [Neisseria gonorrhoeae FA 1090] gi|240127997|ref|ZP_04740658.1| DNA primase [Neisseria gonorrhoeae SK-93-1035] gi|268603437|ref|ZP_06137604.1| DNA primase [Neisseria gonorrhoeae PID1] gi|268686385|ref|ZP_06153247.1| DNA primase [Neisseria gonorrhoeae SK-93-1035] gi|293399242|ref|ZP_06643407.1| DNA primase [Neisseria gonorrhoeae F62] gi|59718276|gb|AAW89681.1| putative DNA primase [Neisseria gonorrhoeae FA 1090] gi|268587568|gb|EEZ52244.1| DNA primase [Neisseria gonorrhoeae PID1] gi|268626669|gb|EEZ59069.1| DNA primase [Neisseria gonorrhoeae SK-93-1035] gi|291610656|gb|EFF39766.1| DNA primase [Neisseria gonorrhoeae F62] Length = 590 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 181/608 (29%), Positives = 291/608 (47%), Gaps = 42/608 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I +I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVGIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMIVPKVRGQNDNPEVRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGRHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q GV V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAER----------ILVVEGYMDVVALAQFGVGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGK FE L+ +S PL + W+ ++ NT + +AEL + I Sbjct: 340 HDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLSDGIHLNTQEGKAELVKTSSPLLVQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + ++ K P + Q + Sbjct: 400 TAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKRHVKQKNYKLPPISVKQPVM---- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 P+L + + LIN P +L D + + L + + Sbjct: 454 ----PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALDGDFACLANLAETIKNHPSVPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + ++ R + E + + + G ++ L K ++ + ++ Sbjct: 507 QVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCENFQIGIKKLLNELKYSQIETLKQ 566 Query: 596 EEIEKQIA 603 + ++ + Sbjct: 567 KSLQSGLN 574 >gi|324993241|gb|EGC25161.1| DNA primase [Streptococcus sanguinis SK405] Length = 602 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 DLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ +LQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEDLQVLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|301169247|emb|CBW28844.1| DNA primase [Haemophilus influenzae 10810] gi|740008|prf||2004290A primase Length = 593 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|73540590|ref|YP_295110.1| DNA primase [Ralstonia eutropha JMP134] gi|72118003|gb|AAZ60266.1| DNA primase [Ralstonia eutropha JMP134] Length = 604 Score = 353 bits (906), Expect = 5e-95, Method: Composition-based stats. Identities = 171/643 (26%), Positives = 283/643 (44%), Gaps = 58/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117 +CF C G + FL G S+ E+V+ LA G+ +P + +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEYSGQSYPEAVRELAQSVGMSVPEERDRLPPGQRAEQQARSVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + AT+F+ L+ + YL RG+ F LGYAPD L Sbjct: 117 SDAMSRATEFYRRQLRG--APQAIQYLKGRGLTGEIAAQFGLGYAPDDWQGLEAVFGSYR 174 Query: 178 FSEE--------KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 +IE+ D D YDRFR+R++FPIR+++G VI FGGR + +GE Sbjct: 175 DDTIAAPLVEAGLLIESSEKRDADGKPRRYDRFRDRIMFPIRNTKGAVIGFGGRVIGQGE 234 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET LF KG LY F A + ++ + ++++VEGYMDV++L Q Sbjct: 235 P-KYLNSPETPLFSKGTELYGLFEARHAIR----------ETGYVLVVEGYMDVVALAQL 283 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H+ + Sbjct: 284 GFANAVATLGTACTPVHVQKLLRQTDSVVFSFDGDAAGRRAARRALEACLPHVADNKAIR 343 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ L DPDS++R G AF + +++PL L + TE + P+ RA + K Sbjct: 344 FLFLPAEHDPDSYVREEGTEAFAAQVRDAMPLSRFLLQAVTEEQDMRQPEGRARAQYEAK 403 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + LR + + D I G + R + ++R + Sbjct: 404 PLLQAMPACGLRLQIIRELADATG-TTPAEIEAICGLRSDPARAGRFAQPRPRAKRQAPT 462 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFV 527 L E +L L+ +P++ ++ + D + + L + + Sbjct: 463 GL------------EQRVLQLLMCYPSLAARLDEDSRALLLDPEGADAEVLAHLVAACDE 510 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L + + E+ V + E + + LA Sbjct: 511 VEGQVNFAAFSEHLAQSPYAEMYAAARTAVLREEIE---EEPATQEFDAAVTKLLA---- 563 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 LSR+ E ++ + TA + ++ + L E+H + Sbjct: 564 -EPLSRELERLQAAVIAGTADEDGKQR---MRWLVGEIHRRRR 602 >gi|167573585|ref|ZP_02366459.1| DNA primase [Burkholderia oklahomensis C6786] Length = 625 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 172/657 (26%), Positives = 274/657 (41%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI---- 118 +CF C G + FL G +F E+VQ LA AG+ +P + D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSAGLTVPHEPSPMRGGGGSPGDGYAPLA 116 Query: 119 ----------RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 ASKAVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DHKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR +RLQ F + R Sbjct: 404 FDAKPMLQALPANALRAQIMHMFAERLQIPFDEVAALVEVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L L+ HP I E +L+ + Sbjct: 449 APARQAPARSERRRVTDNEKRALRNLVMHPRIAATLDDESLATLRALPRNGELFDEVIGH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD + ++ +R+ Sbjct: 509 ARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDVAQEGLREQ 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + GE + L L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACRDRLNSLSKR--SAPSSGELAEIKDLHQNLADMKRRL 623 >gi|111221462|ref|YP_712256.1| DNA primase [Frankia alni ACN14a] gi|111148994|emb|CAJ60674.1| Primase; primer synthesis for leading-and lagging-strand synthesis; binds Zn(II) [Frankia alni ACN14a] Length = 703 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 141/650 (21%), Positives = 250/650 (38%), Gaps = 48/650 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + PI++++ ++V N + CPFH+EK+PSF+ N + G Sbjct: 78 RIRDADVALVRERSPIADVVSEHVQLRPAGRN----ELVGLCPFHEEKSPSFYVNVATGL 133 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 ++CF C GD SF+ + G SF E+ +RLA AGV L + + L+ Sbjct: 134 FHCFGCQQGGDVYSFVREIDGLSFREAAERLARRAGVTLTFEGGGTTDRTVSSQRQRLLE 193 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +A +F+ L + + +L RG D A + F +GYA +L HL + F Sbjct: 194 AHRIAAEFYAEQLGGHPSARAGWDFLTARGFDLTAAQRFGVGYAATGWDTLTRHLLSRRF 253 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYL 234 + E+++ GL DRF +RL++PIR G+V+ FGGR L++ KYL Sbjct: 254 TGEELVLGGL-SKQGARGGLIDRFHHRLMWPIRDLAGEVVGFGGRRLAEDGSPNAGPKYL 312 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LF K LY A + + +++VEGY DV++ AGV Sbjct: 313 NSPETPLFKKASLLYGAELARRDIARRY----------QVVVVEGYTDVMACHLAGVTTA 362 Query: 295 VSSLGTALTEYQLRLLWK-------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 V++ GTA + ++ + ++ FDGD G +AA +A + + Sbjct: 363 VATCGTAFGPEHVGVVRRLLMDSDERRGEVIFTFDGDAAGQKAALRAFEHEERFAT---Q 419 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + G DP G A +L+ +PLV+ + +T + R Sbjct: 420 TFVAVEPTGLDPCELWMRGGDAAVRELVARRVPLVEFAIRGVLARYDLDTTEGRLAALDA 479 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 IN IKD LR+ ++ + L L ++++ R + R R Sbjct: 480 AAPLINRIKDAGLRHRHAVNLDRWLGFLDERFVARRVAEHREQQTGGRSAAVASAVGRR- 538 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----F 523 + + + E L + P + + LA + + + + Sbjct: 539 -----EPAATDPTVIVEREALKLAVQFPGLAGPMFDTLAPEMFTVPAHRAVRELISGLGG 593 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + L E L++ + + + Q Sbjct: 594 VGGGLARTGDVAAWVTELSAAATEEGLRRFVTALAVERVLCDRDVDDRYVDEQM------ 647 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++R+ +++ ++ ++ +AE L + HQ+ Sbjct: 648 SRVQELHVTRRITDLKSRVQRLNPVVDAEAFNRAYGELIALEQHKHQLRE 697 >gi|332185672|ref|ZP_08387419.1| DNA primase [Sphingomonas sp. S17] gi|332014030|gb|EGI56088.1| DNA primase [Sphingomonas sp. S17] Length = 615 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 197/624 (31%), Positives = 299/624 (47%), Gaps = 47/624 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ F+ +L +S LIG+ V + +Y CCPFH+EKTPSF+ ND KG Sbjct: 1 MSLTPQFLDELRARTSLSALIGKTVKLQKAGR-----EYKGCCPFHNEKTPSFYVNDDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G FI++V+ LA +AG+ +P D + +K + L Sbjct: 56 FYHCFGCSAHGDAIRWMTDQRGLPFIDAVKELAQVAGLEMPAQDRRAAQKAERAKGLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++F L L+ R + F LG+APDSR L+ L G Sbjct: 116 MADAANWFSEQLGGLSGGDARALLERRRVTPETARAFGLGFAPDSRGKLKAALADYGDP- 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IE GLLI D YDRFR RL+ PIR +RG+VIAFGGR + +GE KYLNSP+T Sbjct: 175 -ALIECGLLIKVDGKD-PYDRFRGRLMIPIRDARGRVIAFGGRIIGEGEP-KYLNSPDTP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LYN A ++KS R +++VEGYMDV++L QAG++ V+ LGT Sbjct: 232 LFDKGRTLYNLDRAAAAVRKSGR----------VLVVEGYMDVIALAQAGIEEAVAPLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE+QL LW++ LCFDGD G +AA +A L L PG ++FV L +G+DPD Sbjct: 282 ALTEHQLERLWRMVDVPTLCFDGDAAGQKAAIRAAHRALPLLQPGKSLSFVTLPQGQDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G FE ++ + PL D+LW+ E +TP+ RA L+ L+ I + L Sbjct: 342 DLVQEKGAAGFESVLTRATPLSDLLWQSEIAQAQTDTPEGRAALKQRLEELAQQIPHKDL 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y Y +A+ R +F R + + + + Sbjct: 402 AYEYKRAMMSRYFDIF-----------------GIRRVNAAAVHQAVAEANRHVGRGVEY 444 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 SL+ A+LL L+ +P +L EL+ + + L L V + ++ Sbjct: 445 SLK-RAVLLGLMRYPHVLCRYMDELSRLDMGDRYLNDWRHHLLDAAVNDPHLSRKD---- 499 Query: 541 LCERGFGELLKQLDR--QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L++Q+ V T + + A+A+ +++ EE Sbjct: 500 --AAEAESLIEQIMATTDVHPIDARDYTRDLAFSFFSKMSDPAIAVRDLEKVIEVMLEES 557 Query: 599 EKQIAQVTA--KGEAEKTAILISI 620 E + + A +A+ T + Sbjct: 558 ETRANRARAVEAFQADMTEDRFAE 581 >gi|332362695|gb|EGJ40493.1| DNA primase [Streptococcus sanguinis SK49] Length = 602 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+E+VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMEAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQAVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +++HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLTRLMRAENHIFHRMLHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|21244600|ref|NP_644182.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306] gi|21110280|gb|AAM38718.1| DNA primase [Xanthomonas axonopodis pv. citri str. 306] Length = 582 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 170/631 (26%), Positives = 271/631 (42%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGS--GRARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + R R + SLV+ Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|318041285|ref|ZP_07973241.1| DNA primase [Synechococcus sp. CB0101] Length = 706 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 170/677 (25%), Positives = 295/677 (43%), Gaps = 71/677 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+K+PS + +K F Sbjct: 8 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGVCPFHDDKSPSMTVSPAKQF 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL L SF + V LA +P+ ++ +++ + + L Sbjct: 63 YYCFSCGAGGNAIKFLMELQRQSFSDVVLELARKYQLPVETLEGPQQERLRQQLSRRDQL 122 Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ +A +F L++ Y ++RG+ +E F LGYAP+ L HL+Q Sbjct: 123 HKVLSLAAGWFRSQLRSPDGASALAYLREQRGLSETTLESFGLGYAPERWDGLLSHLQQV 182 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +GF+ E + AGL++ YDRFR+R++ PI +G++I FGGR+L GE KYLN Sbjct: 183 EGFAPELLEAAGLVVPRRGGDGFYDRFRHRVMVPICDRQGRIIGFGGRSLDGGEP-KYLN 241 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A+N ++K R ++VEGY DV++L AG+ N V Sbjct: 242 SPETEVFEKGKHLFGLDKAVNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 291 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 ++LGTAL+ Q+ L + R++L FD D G+RAA +AI V + G + + Sbjct: 292 AALGTALSSQQITQLCRCCDGKRLILNFDTDRAGVRAAQRAIGEVEQLALQGQLELRVLH 351 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D + E R D+ + L + Sbjct: 352 LPAGKDPDEFLKEHGAGEYRSLLDQAPLWLDWQIDQVLEGRDLARSDQFQQSVSELVVLL 411 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R Y Q + +RL + + R K R + ++ ++ L Sbjct: 412 GKLPASAVRSRYLQQVAERLSGGQARLALQLEDDLRQQVKGQRWHGRSQRWEQPGEAGLR 471 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE- 528 EA LL ++ P EL + ++LW+ + S + Sbjct: 472 --------ERAEAELLRLYLHCPPHRGTIRAELRRRELDDFALAHHRQLWAAISSLEEDN 523 Query: 529 ---------QKYFLPEEIHQRLC---------ERGFGELLKQLDRQVRDAGLWSATTEAN 570 + P L GE L ++ + Sbjct: 524 LGVGRLEAINRGVDPGVELADLELPRLLSDQLLLSDGESPSDLLTRLTPLLEPTDVQRLA 583 Query: 571 IVDVRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKG-----EAEKT 614 + + + A A +R R L R + E +E+ IA++ +G E Sbjct: 584 LANPLLQLRGATASLERQRSLKRCRHLLNAWSAQRLETLERCIARLLEEGQAPAAEPAPG 643 Query: 615 AILISILHEVHIQIHQI 631 L ++ +I + Sbjct: 644 QALQPAALDMEARIEAM 660 >gi|145628916|ref|ZP_01784716.1| DNA primase [Haemophilus influenzae 22.1-21] gi|144979386|gb|EDJ89072.1| DNA primase [Haemophilus influenzae 22.1-21] Length = 593 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRTNHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F++ + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|268590607|ref|ZP_06124828.1| DNA primase [Providencia rettgeri DSM 1131] gi|291313998|gb|EFE54451.1| DNA primase [Providencia rettgeri DSM 1131] Length = 581 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 163/595 (27%), Positives = 274/595 (46%), Gaps = 41/595 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +L+ V ++ N + ACCPFH+EKTPSF N + F Sbjct: 4 RIPRSFINDLLARTDIIDLVDAKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGERQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 YYCF C G+ + FL F+E+++ L+A+ G+ +P + + + +L + Sbjct: 59 YYCFGCGAHGNAIDFLMNYDKLDFVEAIEELSALHGLDVPYEKGTGSSQIELHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E F+ +L + + YL +RG+ + IE F +G+AP +L + S Sbjct: 119 LMEKINQFYCAALSHPSANKAKDYLSQRGLSTEIIEHFSIGFAPAGWDNLLKKFAVNPES 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ +AG+L+ +++ YDRFR R++FPIR RG+VIAFGGR L KYLNSPET Sbjct: 179 RKQLDDAGMLV-TNDNGRVYDRFRERVMFPIRDRRGRVIAFGGRVL-GDALPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ L+ + A N S +++VEGYMDV++L Q ++ V+SLG Sbjct: 237 DIFHKGRQLFGLYEA----------TQNSNELSKLLVVEGYMDVVALAQYDIRYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++A++ L +L G ++ F+ L GEDP Sbjct: 287 TSTTSEHIQLLYRSTDTVICCYDGDRAGREAAWRALETALPYLTDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R GK AFE+ + ++ L L+ T + +A+ I I + Sbjct: 347 DSLVRKEGKNAFEQRMKDAQTLSAFLFDSLVPQVDLKTQEGKAKFSKLAIPLIKQIPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y +Q + + + + + N + K + Sbjct: 407 LRLYMAQELGNFIGIPDISQVLAMIDRESTEQVNYQAPKLKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L L+ L ++ + Sbjct: 452 -----RILIALLVQNPNFSELVPSLEGIAHIQMPGL-SLFQELVDVCRSTPGMSTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 R + F + L++L D + I + + AL + + + Sbjct: 506 RYRDNKFAKQLEKLATW-NDIEIEEIAENTFIDALNHLFNSALDERFDYLIAKER 559 >gi|206562772|ref|YP_002233535.1| DNA primase [Burkholderia cenocepacia J2315] gi|198038812|emb|CAR54774.1| putative DNA primase [Burkholderia cenocepacia J2315] Length = 625 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 172/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L + A D++ L+ YL RG+ F LGYAPD Sbjct: 117 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++ Sbjct: 235 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRL F++ R + Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRIATPPRQ---------- 453 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L TL+ HP + + E + +L++ + Sbjct: 454 -----APARSERRRVTDSEKRALRTLVMHPRVASQLDDEQIATLRALPRIGELFAEVVDH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD L + E R+ Sbjct: 509 ARALGEGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 623 >gi|116691982|ref|YP_837515.1| DNA primase [Burkholderia cenocepacia HI2424] gi|170736024|ref|YP_001777284.1| DNA primase [Burkholderia cenocepacia MC0-3] gi|116649982|gb|ABK10622.1| DNA primase [Burkholderia cenocepacia HI2424] gi|169818212|gb|ACA92794.1| DNA primase [Burkholderia cenocepacia MC0-3] Length = 625 Score = 353 bits (905), Expect = 6e-95, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L + A D++ L+ YL RG+ F LGYAPD Sbjct: 117 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++ Sbjct: 235 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRL F++ R + Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDTRIATPPRQ---------- 453 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L TL+ HP I + E + +L++ + Sbjct: 454 -----APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD L + E R+ Sbjct: 509 ARALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 623 >gi|323352413|ref|ZP_08087548.1| DNA primase [Streptococcus sanguinis VMC66] gi|322121845|gb|EFX93586.1| DNA primase [Streptococcus sanguinis VMC66] Length = 602 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V + ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHIQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|294626488|ref|ZP_06705087.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292599178|gb|EFF43316.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 582 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 172/631 (27%), Positives = 273/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGRT+ + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRTMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + S +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREISLHTLDGKARLAERARPLLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + R R + SLV+ Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|291459599|ref|ZP_06598989.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417877|gb|EFE91596.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262] Length = 584 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 178/628 (28%), Positives = 267/628 (42%), Gaps = 52/628 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP +FI++L I ++IG YV +R N Y+ CPFH EKTPSF K Sbjct: 1 MYYPDEFIEELRSRANIVDVIGNYVSLKKRGAN-----YFGLCPFHGEKTPSFSVAPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118 +YCF C GD L FL SF E+VQRLA+ VPLP + + L+ Sbjct: 56 IFYCFGCGKGGDVLKFLMEYENISFQEAVQRLASELNVPLPELSDTGAGRAERDRRMRLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L A FF+ +L++ YL +RGI I + LGYA R SL +L+ KG+ Sbjct: 116 ELNRDAAVFFYAALRSDAGAPGLSYLKKRGIRGETIVHWGLGYADQRRDSLYRYLKGKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E + ++GL + + DRF R+IFPI +VI FGGR + +GE KYLNSPE Sbjct: 176 EDELLRDSGLFRFSERGVS--DRFFQRVIFPILDVNMRVIGFGGRVIGEGEP-KYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NL+ A QK +IL EGYMDV+S+ QAG N V+SL Sbjct: 233 TELFDKSRNLFGLNFAKRSRQK------------QMILCEGYMDVISMHQAGFSNAVASL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LTE Q LL + +VL +D D+ G++AA +AI + G + L +D Sbjct: 281 GTSLTERQAALLKRYVSELVLSYDSDNAGVKAAKRAIPI---LREAGVEPKLLDLRPCKD 337 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKD 417 PD IR G + + + ++ + E N P + ++ D Sbjct: 338 PDELIRTKGPDSLRERLSKARNAFLWEVETEKGNYDLQDPAGLNAYYQAVGKLLSVSFSD 397 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y +A+ Q + + + + + + +G S+ +S + Sbjct: 398 PLERESYIRAVARE-QLIDYELLRQLVERRSGEQSPLLNPPGRGDSREQRRSG---RRAE 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L+ L P ++ + + + ++++ L I Sbjct: 454 SREQRTERQLIAWLSEKPDMIPIAEKHIRPSELSDEICREIFPLLCQRL------PASRI 507 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 R +R R A L S D + + L R L R EE Sbjct: 508 LDRFRGDE--------ERYERAASLLSGDPVGTESD-EKALLKGLEDIIRSIRLRRLNEE 558 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625 IE++ + E+ L + Sbjct: 559 IERE-------SDGERLTELFREQSALQ 579 >gi|294666748|ref|ZP_06731983.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603493|gb|EFF46909.1| DNA primase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 582 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 170/631 (26%), Positives = 272/631 (43%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGGRVPLKRQGK-----EYSARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P + +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQRTPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF L+ + +R YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 LEAATKFFQRQLEGS--ERARDYLDGRGVDADNRARFQIGYAPDGYSALKDTLGTDARRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLN 235 + AGL D YD+FR+R++FPI RG+VIAFGGR + + KYLN Sbjct: 176 SVLERAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRIMGAPADGRDPGPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V Sbjct: 235 SPETALFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T LL++ +P + CFDGD+ G +A ++A++ VL + G + F+ L Sbjct: 285 ATLGTATTPEHAELLFRNAPDVYFCFDGDNAGRKAGWRALESVLPRMKDGRQAFFLFLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD+ +R G AF++ + ++ PL + + + +T D +A L + + I Sbjct: 345 GEDPDTIVRKEGAQAFDQRLKQATPLSQFFFDEMSREINLHTLDGKARLAERARPLLAQI 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Q + + R R + SLV+ Sbjct: 405 PEGAFGDLMKQELARLTG---------VGANASAQQPAPRPRPPARMGAPTQKRSLVRAS 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ P++ + L L ++ Sbjct: 456 ------------IAILLQRPSLAMSLEGVHDFSGLRLPGIDLLME-LLDLVRQRPEISTG 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ER L++L Q + +LL ++ Sbjct: 503 ALLEHFAEREELAALQKLAAQELPGD----------EHSWTLELHDVVAQLDKQLLRQRV 552 Query: 596 EEIEKQIAQVTAKGEAEKTA--ILISILHEV 624 EE++ + + + +K L+ L + Sbjct: 553 EELQAK-QRAQGLDDTDKYEMRELLKALAAL 582 >gi|260582764|ref|ZP_05850551.1| DNA primase [Haemophilus influenzae NT127] gi|260094214|gb|EEW78115.1| DNA primase [Haemophilus influenzae NT127] Length = 593 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRTNHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F++ + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|145637427|ref|ZP_01793086.1| DNA primase [Haemophilus influenzae PittHH] gi|145269373|gb|EDK09317.1| DNA primase [Haemophilus influenzae PittHH] Length = 593 Score = 353 bits (904), Expect = 7e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ + IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|325696736|gb|EGD38624.1| DNA primase [Streptococcus sanguinis SK160] Length = 602 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 267/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYRRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQEAATDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA++ + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALNEL-----KDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEVPTQQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQTLYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLSDNVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|83814662|ref|YP_445102.1| DNA primase [Salinibacter ruber DSM 13855] gi|83756056|gb|ABC44169.1| DNA primase [Salinibacter ruber DSM 13855] Length = 655 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 172/674 (25%), Positives = 287/674 (42%), Gaps = 59/674 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + I+++ + + + YV + + Y CPFH+E TPSF + + Sbjct: 1 MAIPDEKIEEVRTAVDLVEVAEDYVQLKQSGS-----RYMGLCPFHNEDTPSFSVDPDQN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C GD F+ + G F+ESV+ LA GVPLP + + ++ Sbjct: 56 LYYCFGCQNGGDAFKFVQEIEGVGFLESVRMLADRYGVPLPEEET-DPDAANEREAVLHA 114 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A FF+ L ++ R + YL RG I+ F LGYAPD +L ++ Sbjct: 115 LRFAARFFYRQLTQSDRGRPALDYLRRRGFTPQTIKQFGLGYAPDEWDALLTVAEEEQID 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNS 236 E + +AGL+I+ ++ + YDR+R R+IFPI S G+V+AF GR L + KY+NS Sbjct: 175 RETLEKAGLIIERNDGSGYYDRYRGRIIFPIFSHIGKVLAFAGRILDPDDERDQPKYINS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET ++HK + LY A ++K + ++LVEGY DV+SL QAGV NVV+ Sbjct: 235 PETEVYHKKEVLYGLHQAKQAIRK----------TDEVLLVEGYTDVISLSQAGVGNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALTE Q+ L + + R V+ +D D+ G RAA + ++ VL G V L G Sbjct: 285 SSGTALTEQQIGTLDRYAKRAVMLYDADEAGERAALRGMERVL---EAGLGAYAVELPAG 341 Query: 357 EDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +++ +G AF L ++R N TP++R E++ + + I Sbjct: 342 NDPDEYVQEHGGDAFSDYVQEHRQDLPSFAYQRARRNGVLETPEDRVEVQREIIESVARI 401 Query: 416 KDQKLRYYYSQAIRD--------RLQQLFQKYITEHSGYGRYWKKNARHRDQK------- 460 D LR Y + + L ++ R K+ + + ++ Sbjct: 402 PDPNLRREYVAHTSEVTGVPDSDLFRMLEEEREQMERRAQRQRKREQKRQQRQAEEGASP 461 Query: 461 -----------GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADI 508 G S S+ K E L ++ + ++ +A Sbjct: 462 SGEQAAPPDRNGASPPPPNSTTGKTASGPALLPEERVLFRLMLENGRRMVSLVLGHMALD 521 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA-GLWSATT 567 + + + E P++I +L + +A W+ Sbjct: 522 EFSEGAPRDFARAFAEMY-EDGTVRPQQILNGEHGEALQQLGASVMMDEHEASEHWAQKE 580 Query: 568 EANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---L 621 + ++ + +A + + + E + +++ Q + +G E+ L L Sbjct: 581 DISVPHLNDRPYEAARSAMKFLKMDRVDEAIEAVRERMYQASQQGADEEVQRLQQKMMSL 640 Query: 622 HEVHIQIHQIESQE 635 E+ I + E E Sbjct: 641 QELRKGIKRGEFLE 654 >gi|94311543|ref|YP_584753.1| DNA primase [Cupriavidus metallidurans CH34] gi|93355395|gb|ABF09484.1| DNA primase [Cupriavidus metallidurans CH34] Length = 613 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 173/653 (26%), Positives = 289/653 (44%), Gaps = 59/653 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-----KIEKKEKIQTDL 117 +CF C G + FL G S+ ++V+ LA G+ +P + +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEYSGQSYPDAVRELAQSVGLSVPEERNSLPPAQRAEQQARSLAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + ATDF+ L+ + YL RG+ F LGYAPD L Sbjct: 117 TDAMTRATDFYKKQLRG--APQAIQYLKGRGLTGEIAAHFGLGYAPDDWQGLETVFGSYR 174 Query: 178 FSEE--------KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 +IE+ D D YDRFR+R++FPIR+++G VI FGGR + +GE Sbjct: 175 DDAIAGPLVEAGLLIESQEKRDADGKPRRYDRFRDRIMFPIRNTKGNVIGFGGRVMGQGE 234 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET LF KG LY F A + ++ + ++++VEGYMDV++L Q Sbjct: 235 P-KYLNSPETPLFSKGTELYGLFEARHAIR----------ENGYVLVVEGYMDVVALAQL 283 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H+ + Sbjct: 284 GFANAVATLGTACTPVHVQKLMRQTDAVVFSFDGDAAGRRAARRALEACLPHVADNKTIR 343 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ L DPDS++R G AF + + ++PL L + TE++ P+ RA + K Sbjct: 344 FLFLPAEHDPDSYVREEGTDAFARQVQNAMPLSRFLLQIVTEDQDLRQPEGRARAQYEAK 403 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + LR + + D I G G + R + ++R + Sbjct: 404 PLLQAMPAGGLRLQIVRELAD-TTSTTPAEIEAICGLGSDSSRVGRFAQPRPRARRQAPT 462 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDF 526 L E ++ L+ +P++ + A + + + L + + Sbjct: 463 GL------------EQRVIQLLMCYPSLAARLDGD-ARALLLDPQHSGSEALGYLVSACD 509 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 Q ++L + + ++ V E + A+ Sbjct: 510 GIQGEVNFAAFSEQLAQTPYADVYASARTAV-------LREEIEEEPATHEFDGAVHKLL 562 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 L R+++ +E ++ TA + E A + + EV + Q+ + A +E Sbjct: 563 -AEPLEREQKALEAMVSAGTA--DEETKARYLWLSREVQRR-RQMGWRPAAME 611 >gi|145633516|ref|ZP_01789245.1| DNA primase [Haemophilus influenzae 3655] gi|144985885|gb|EDJ92493.1| DNA primase [Haemophilus influenzae 3655] Length = 593 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 287/633 (45%), Gaps = 55/633 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL I ++I V + DY ACCPFH EKTPSF + K FY Sbjct: 5 IPRPFIDDLLTKSNIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTDL 117 +CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + +L Sbjct: 60 HCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEVPYEKRANNSGKPQANYQTKRNL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L++ F+ L + + YL +RG+ + I+ F++G+ P++ ++ Sbjct: 120 YELMQEIAAFYQSQL--PLNTQAQEYLQQRGLSAEIIKRFQIGFVPNAMDTVLRKFGVNR 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNSP Sbjct: 178 EEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ETI +HKG LY + AL + +++VEGYMDV++L Q GV V+S Sbjct: 236 ETITYHKGNELYGLYEALQA----------NDEPKQLLVVEGYMDVVALAQFGVDYAVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L GE Sbjct: 286 LGTSTTSEQIQLMFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDGE 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD++IR YGK FE+ I + L + ++ + F+T + R +L I I Sbjct: 346 DPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIRQIPG 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR + +L Q + + + M Sbjct: 406 EMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVANNKIKKTPM---------- 455 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ L+ +P +++ + ++ L + +++ +I Sbjct: 456 -------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQI 507 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L+ L + D+ + Q R + + + Sbjct: 508 LEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIERD 554 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 IE IA+ +G + ++ L Q + Sbjct: 555 IEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|145638552|ref|ZP_01794161.1| DNA primase [Haemophilus influenzae PittII] gi|145272147|gb|EDK12055.1| DNA primase [Haemophilus influenzae PittII] gi|309750057|gb|ADO80041.1| DNA primase [Haemophilus influenzae R2866] Length = 593 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K++ + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKLQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|171320195|ref|ZP_02909255.1| DNA primase [Burkholderia ambifaria MEX-5] gi|171094547|gb|EDT39601.1| DNA primase [Burkholderia ambifaria MEX-5] Length = 623 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 174/655 (26%), Positives = 278/655 (42%), Gaps = 64/655 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGDYPAPVS 116 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-- 168 + + T L ++ VA D++ L+ YL RG+ F LGYAPD + Sbjct: 117 KSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 174 Query: 169 -LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 TAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 234 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 283 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRT 343 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 IRFLFLPSEHDPDSYVREFGAHAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 403 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + LR DRL F++ R + Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDARIAAPARQ------------ 451 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 ++ + E L TL+ HP I + E + +L++ + Sbjct: 452 ---APPRSERRRVTDSEKRALRTLVMHPRIATQLDDEQLATLRALPRIGELFAEVVEHAR 508 Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 509 ALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQER 568 Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 621 >gi|68249129|ref|YP_248241.1| DNA primase [Haemophilus influenzae 86-028NP] gi|145635387|ref|ZP_01791089.1| DNA primase [Haemophilus influenzae PittAA] gi|148825194|ref|YP_001289947.1| DNA primase [Haemophilus influenzae PittEE] gi|68057328|gb|AAX87581.1| DNA primase [Haemophilus influenzae 86-028NP] gi|145267393|gb|EDK07395.1| DNA primase [Haemophilus influenzae PittAA] gi|148715354|gb|ABQ97564.1| DNA primase [Haemophilus influenzae PittEE] Length = 593 Score = 353 bits (904), Expect = 8e-95, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|127511930|ref|YP_001093127.1| DNA primase [Shewanella loihica PV-4] gi|126637225|gb|ABO22868.1| DNA primase [Shewanella loihica PV-4] Length = 601 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 179/630 (28%), Positives = 304/630 (48%), Gaps = 66/630 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PR+FI +L+ I +LI V + N ACCPFH EK+PSF + K Sbjct: 27 MAIPREFINELVARTDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 81 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P +++++ + DL + Sbjct: 82 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEELAGRLGLEVPREQGTGKRRDEGLSRDLYQ 141 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F LK DK+ YL RG+ IE F +G+APD L RQ Sbjct: 142 LMEEASRYFQSQLKQHTDKQKVLDYLAHRGLSDEVIEHFNIGFAPDGWDGLLGRYRQNQD 201 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG++I+ D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 202 AQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 259 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + S I++VEGYMDV++L Q GV V+SL Sbjct: 260 TPIFHKGYELYGLYELKQRHRDP----------SQILIVEGYMDVVALTQFGVDYAVASL 309 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L +GED Sbjct: 310 GTSTTADQFQLLLRSAKEVICCYDGDKAGTEAAWRALETALPLLKPGDQVKFMFLPQGED 369 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE+LI E+ L + L+ ++ L + I ++D Sbjct: 370 PDSLVRQIGKPAFEQLIAEAKLLPEFLFDTLASRY----GTDKGTLAKQAMSLIEKVQDT 425 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + G+ R + + +Q+ +KG+ + Sbjct: 426 VLQSLLLENLAYKLGMNSAEELQRKLGFKRI------------DANKPLQNKALKGRGTP 473 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV------EQKYF 532 + L+ HP L + L+ + + Sbjct: 474 L-----RLAIALLVQHPH--------LGNNLPVQPALKHIKMAGIDLLSLLLDRTRAEKV 520 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ ++ + LK+L + + +++Q +++AL ++ + + Sbjct: 521 NSAQLLEQFRGDDQLDTLKKLAQW---------EHQVADENLQQEFKKAL-IWLNNQYIE 570 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH 622 ++ +E+ + Q K E + LI+++ Sbjct: 571 QRYQEL--SLKQHHTKEERMQLKKLIAVIQ 598 >gi|331006376|ref|ZP_08329685.1| DNA primase [gamma proteobacterium IMCC1989] gi|330419800|gb|EGG94157.1| DNA primase [gamma proteobacterium IMCC1989] Length = 676 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 175/637 (27%), Positives = 284/637 (44%), Gaps = 76/637 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P+ FI DLL + I ++I V + N Y ACCPFHDEKTPSF + K F Sbjct: 4 SIPQPFIDDLLERVDIVDVIDSRVKLKKTGKN-----YSACCPFHDEKTPSFSVSPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-------EKIQ 114 +YCF C G+ + F+ SF E++ LA +AGV +P K +K EKI+ Sbjct: 59 FYCFGCGASGNSIGFIMDYERLSFPEAIDSLAKVAGVEVPREHTKDPQKRAQNEAQEKIR 118 Query: 115 TDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 L L+E D++ L+ + + YL RG+ + F +GYAP +L + L Sbjct: 119 KLLFSLMEQTNDYYQLQLREHPQKNTPVNYLKNRGLSGQIAKDFGVGYAPPGWDNLIKTL 178 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 ++ ++E G+LI+ ++ YDRFR R++FPIR SRG+VI FGGR L E KY Sbjct: 179 ATSNEKQDLLLEGGMLINNEDKGRLYDRFRERIMFPIRDSRGRVIGFGGRVL-NDEKPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F KGK LY + A ++ R +++VEGYMDV++L Q G++ Sbjct: 238 LNSPETPIFFKGKELYGLYEARQAYRQLPR----------VLVVEGYMDVVALAQYGIRY 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA +E LR+ +K + +V CFDGDD G +AA +A++ + + G ++ F+ L Sbjct: 288 GVATLGTACSEEHLRIAFKYTNEVVFCFDGDDAGRKAARRAMENSITSMEDGRQIKFLYL 347 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPD+ +R G F KLI + PL + L++ ++ T + RA L ++ Sbjct: 348 PEGEDPDTLVRQIGDEKFTKLIEGASPLENFLFEELGQSFDTQTMEGRARLCKIAAPMLD 407 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNARHRDQKGPSQRLM 467 + R + +R Q + + + + ++ + P++ + Sbjct: 408 QLPRGVYRELMFNQLANRTQLSMDALMRLLEELPKQANPAAAPQISSPNHIATEPAKNIT 467 Query: 468 ---------------------------------------------QSSLVKGKLSKKPSL 482 Q++ K Sbjct: 468 AETNHTKQNDEPRFIEAHDYDGHDGYDYDEESPPNARLSSDWHSDQNTPAKNNTPASSHQ 527 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L L+ P + E ++ D+R E L + L ++ F +I Sbjct: 528 LTRQALSLLLFQPKLAVE-ANDIDDLRDSREENLVLLTNLIDLLQQRPEFTSGQIIGYWQ 586 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 E K+L + + ++ E + + + Sbjct: 587 GTYGAEASKKLQTLINQSDVFHHAQELTQTEEKHVFN 623 >gi|319440600|ref|ZP_07989756.1| DNA primase [Corynebacterium variabile DSM 44702] Length = 658 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 135/667 (20%), Positives = 252/667 (37%), Gaps = 59/667 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + PI ++G+YV PF DEKTPSFH +KG+ Sbjct: 8 RIPDTDIAAIREQTPIEEVVGEYVQLTPGG----VDSMKGLSPFKDEKTPSFHVRPNKGY 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF+ GD SFL + +F E+V++ A G + P + + LI Sbjct: 64 FHCFATGEGGDVFSFLMKMEHVTFPEAVEQCAERIGYHINYEGGGPVNRVEPGTRQRLIA 123 Query: 120 LIEVATDFFHHSL-----KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 A +F+ ++ ++ L +RG +E F GYAPD +L + L Sbjct: 124 ANRAAQEFYRARFLDMDSRDPGAEKARAMLRDRGFSDELVEQFGCGYAPDGWDTLTKVLL 183 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 ++GFS +++ +AGL + DRF RL++PIR+S G VI FG R L + + KY Sbjct: 184 RRGFSFKELEDAGLSR--MGNRGPIDRFHRRLLWPIRNSAGDVIGFGARKLFEDDKLGKY 241 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +N+PET+L+ K K L+ A + ++ ++VEGY DV++L AGV Sbjct: 242 MNTPETLLYKKSKVLFGLDRAKKSI----------SADHQAVVVEGYTDVMALHAAGVTT 291 Query: 294 VVSSLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 V++ GTA E L++L + I+ FDGD+ G +AA +A + Sbjct: 292 AVAACGTAFGEEHLQMLRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQKFTG--- 348 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 R + G DP G A +++ +P+ + + + + D R + Sbjct: 349 RSYVAVAPDGMDPCDLRMERGDAAVREMVASRIPMFEFVIRTIIRGYDTHHVDGRVDALR 408 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------------ 454 + + I+D LR Y++ L + + Sbjct: 409 RVVPVLAGIRDDALRDEYARQASGWLSWSDPSEVVNQVRKAARHSGHRDAVPELREGLAR 468 Query: 455 ---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 R ++ + S L + +L ++ P ++ + L ++ Sbjct: 469 ANRRAAAEQTQAADAPVSLLQRPDPEDVYLRPVREVLKLMLQEPGLVGKDADGLLTDSFE 528 Query: 512 NNELQKLWSFLFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + + + + + + + + ++ Sbjct: 529 HPTYMAVATAIQEAGGVGSVTAGGAGWLDAVSAATKDPMCRAVISELAVEEPRCRAERLP 588 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQ 627 Y +A+ R + + E++ ++ ++ E ++ + L + Sbjct: 589 F------YARAVVARMEERWVGAEIAELKSRMQRMRPDLGAAEKKEYNATFADLMALEKY 642 Query: 628 IHQIESQ 634 ++ Q Sbjct: 643 RRTLQEQ 649 >gi|319775547|ref|YP_004138035.1| DNA primase [Haemophilus influenzae F3047] gi|329122410|ref|ZP_08250997.1| DNA primase [Haemophilus aegyptius ATCC 11116] gi|317450138|emb|CBY86352.1| DNA primase [Haemophilus influenzae F3047] gi|327473692|gb|EGF19111.1| DNA primase [Haemophilus aegyptius ATCC 11116] Length = 593 Score = 352 bits (903), Expect = 9e-95, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 291/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL F+E+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFVEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ + IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNSQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|120553593|ref|YP_957944.1| DNA primase [Marinobacter aquaeolei VT8] gi|120323442|gb|ABM17757.1| DNA primase [Marinobacter aquaeolei VT8] Length = 583 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 179/612 (29%), Positives = 289/612 (47%), Gaps = 36/612 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F++DLL I ++ LIG + + N Y ACCPFHDEKTPSF+ KGFY Sbjct: 5 IPQRFVEDLLDRIDLAELIGSRITLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G F E+V+ LA AG+ +P D +++ + L +E Sbjct: 60 HCFGCGAHGDAISFVREFEGLGFTEAVEELAKRAGLEVPY-DRAAKQEMQQARTLTDALE 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H +L + + YL +RG+D + I+ +++G+AP + +L + + + Sbjct: 119 FANRFYHSALTSQQGGYARDYLKQRGLDENIIQQYQIGFAPGTGTALYDAAPKDLKAPLI 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 D D FRNR++FPIR++RG+ IAFGGRTL + KY+NSPE+ +F Sbjct: 179 ETRT----VSDQYGRPRDLFRNRVMFPIRNTRGKTIAFGGRTL-GDDKAKYINSPESDVF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK + +Y F A +++ +++VEGYMDV++L Q G+ V++LGTA Sbjct: 234 HKSREIYGLFEARQAIRQL----------DKLLVVEGYMDVIALAQHGIHYAVATLGTAT 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L L + IV CFDGD G RAA +A++ L + G + F++L GEDPD+ Sbjct: 284 NQDSLTALLRHVRHIVFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPEGEDPDTL 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G AF+K I + P L+ R++E P+ R EL ++ +N + LR Sbjct: 344 VRKEGPDAFQKRIEGATPFSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLRD 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + Y + R Q P++ + L K Sbjct: 404 AMWHEMLRLCGG--RNQWQNRQQGRNYKARGWRGEGQSRPTEERIDVKLSKDST------ 455 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L L L+ P + E LAD + +L + ++ + L + Sbjct: 456 ----LCLALLEAPELATEVK-ALADSTRQLERAGRFARWLLEEKIQTRKTLVAGLATNKQ 510 Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 R F L +L+ R++ L +A + + Q+ L + LS ++ E + Sbjct: 511 ARDRFYNLFDELEHIPARESTLAAARELLSPNEEAARQQRLATLLRNLAQLSPEEREELR 570 Query: 601 QIAQVTAKGEAE 612 ++ T +AE Sbjct: 571 TLSAGTLNPKAE 582 >gi|194364101|ref|YP_002026711.1| DNA primase [Stenotrophomonas maltophilia R551-3] gi|194346905|gb|ACF50028.1| DNA primase [Stenotrophomonas maltophilia R551-3] Length = 579 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 182/625 (29%), Positives = 275/625 (44%), Gaps = 50/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDDLLARSDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P +P+ +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRSENPRSPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E AT FF +L+ + + YLD RG+D F++GYAPD LR+ L + Sbjct: 118 LEAATKFFQSNLQGSD--KARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + AGL D YD+FR+R++FPI RG+VIAFGGR K + KYLNSPET Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V++LGT Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T LL++ +P + CFDGD G RA +KA++ VL + G + F+ L GEDPD Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G AF + + ++ PL + T + T D +A L K + I D Sbjct: 345 TIVRKEGAEAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Q + G + + R Q + + SLV+G Sbjct: 405 GDLMKQQLAQLTG---------LGGNAQAARAPMPQRQPSRAIQPVAKRSLVRGA----- 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P++ + ++ L ++ + + Sbjct: 451 -------IAVLLQQPSLALTLGGKHHFQGLRLPGVEL-LLELLDLVEQRPDISTGALLEH 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 R L L Q T E A+A ++ L+ R +E + K Sbjct: 503 FDGREEQASLHTLAAQTMPGDDAMWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 Q Q + + L+ + Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578 >gi|332528541|ref|ZP_08404529.1| DNA primase [Hylemonella gracilis ATCC 19624] gi|332042052|gb|EGI78390.1| DNA primase [Hylemonella gracilis ATCC 19624] Length = 659 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 174/688 (25%), Positives = 287/688 (41%), Gaps = 83/688 (12%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P FI++LL + +++G+YV + N + CPFH EK+PSF + +K Sbjct: 1 MAIPSTFIQELLARADVVDIVGRYVQLKKGGAN-----FMGLCPFHAEKSPSFTVSPTKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114 F++CF C GD + FL G SF+E+VQ LA G+ +P D +++E + Q Sbjct: 56 FFHCFGCGKHGDAIGFLMEHTGASFVEAVQDLAQQYGLQVPEDDSTPQQRERAAAQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L +E A + LK + R YL RG+ F LGYAP+ SL Sbjct: 116 ATLSETLEKAGAAYRKHLKGS--PRAIGYLKGRGLSGEIALRFGLGYAPEGWRSLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDG--------DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + ++E+GL+I A YDRFR+R++FPIR+ +G+ I FGGR L Sbjct: 173 -PSYDDPLLVESGLVISSEGEGGATAKGEAKRYDRFRDRIMFPIRNVKGECIGFGGRVL- 230 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 E KYLNSPET +F KG LY + A N ++ + ++++ EGYMDV++L Sbjct: 231 GDEKPKYLNSPETPVFSKGLELYGLYEARNAIR----------DAGYVLVTEGYMDVVAL 280 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T L+ L++ + +V FDGD+ G RA+ +A++ L + Sbjct: 281 AQLGFPNAVATLGTACTPDHLQKLFRFTDSVVFSFDGDEAGRRASRRALEAALPYASDTR 340 Query: 347 RVNFVL---LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 V F+ + DPDS+IR +G+ AF + E+ PL L E ++ + RA Sbjct: 341 TVRFLFLPTQPKKHDPDSYIREHGREAFAHCVSEATPLSRFLIDSAREGCDLSSAEGRAR 400 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 L +H + + D L+ I +Q Q+ + + +++ + Sbjct: 401 LGVHAQPLWEALPDGALKRQLLGEIASLVQLDAQELGSLWADARARSQRHGAGPGPRDAG 460 Query: 464 QRLMQS-------------------------------SLVKGKLSKKPSLREAALLLTLI 492 + + + +++ R + L+ Sbjct: 461 DSAARDGGTASASRSPRSPRSSEGYAAAGRGYRSQPGTGNARRGARQLPQRADHAVRLLL 520 Query: 493 NHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLC---ERGFGE 548 H + + E + + L S+L + EQ + Q L E Sbjct: 521 AHSGLWEHLSSEEHALLCGLPGQHGALLSWLEAWLHEQGPQPWAVLRQALQAHAEATADS 580 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + D + ++ D Q L + L+ + K E +A + Sbjct: 581 FEPETDLPLSTVAQRLMNSDLMPTDDAAEAGQELRSLLKPMLIEQLKAEQTPDLAAHHPE 640 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 E+ +I + S A Sbjct: 641 -----------RYREIQERIKNLSSNAA 657 >gi|15603105|ref|NP_246177.1| DNA primase [Pasteurella multocida subsp. multocida str. Pm70] gi|18202820|sp|Q9CLI9|PRIM_PASMU RecName: Full=DNA primase gi|12721596|gb|AAK03324.1| DnaG [Pasteurella multocida subsp. multocida str. Pm70] Length = 582 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 284/631 (45%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I L+ V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRTFIDDLLAKTDIVELVNSRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDL 117 Y+CF C G+ +SFL F+E+++ LA + G+ +P + + + + +L Sbjct: 59 YHCFGCGAHGNAISFLMEYDKLEFVEAIEELAGMLGLEIPRENKPHFHGKQINLQTKRNL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L++ F+ L + YL +RG+ I F++G+ P+S ++ + Q+ Sbjct: 119 YELMQEIAQFYQQQLAQHIPAQS--YLQQRGLSPEVISRFQIGFVPNSFDAVLQRFGQQK 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++K+ + G+L YDRFR+R++FPIR RG+ IAFGGR L E KYLNSP Sbjct: 177 EDQQKLFDLGMLSRS-EQGKIYDRFRHRIMFPIRDRRGKTIAFGGRVL-GDEKPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +HKG LY + AL S +++VEGYMDV++L Q GV V+S Sbjct: 235 ESATYHKGNELYGLYEALQA----------NESPEMLLVVEGYMDVVALAQFGVDYAVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T Q++LL++ + + + C+DGD G AA++A + L +L G ++ FV L GE Sbjct: 285 LGTATTAEQIQLLFRSTEQAICCYDGDRAGREAAWRAFENALPYLEDGRQLKFVFLPDGE 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSFIR +GK +FE+ + ++L L + L+ F++ + + +L I I Sbjct: 345 DPDSFIRQHGKASFEQYMQKALSLSEFLFTSLAPQVDFSSKEGKTKLAALAVPLIKKIPG 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR + +L L Q + K A + K Sbjct: 405 DMLRLSLRNTLAQKLGILDQAQLESLIPSYSEMKITASPQPVKRTPM------------- 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P + Q L+ +R N L L + E+ +I Sbjct: 452 -------RVLIGLLLQNPELAQLVPD-LSPLRTLNEPGLDLLEKLTALCQEKVGITTGQI 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + L+ L + I + + + L E Sbjct: 504 LEYWRDTEHSKALEILASWN------HLVEDTQIEETFKSTLRYLYFQLIEH-------E 550 Query: 598 IEKQIAQVTAKG-EAEKTAILISILHEVHIQ 627 I+ IA+ ++G + L +L + + Sbjct: 551 IDLLIAKDRSEGLNMNERKKLTQLLVKKQQK 581 >gi|308180762|ref|YP_003924890.1| DNA primase DnaG [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046253|gb|ADN98796.1| DNA primase DnaG [Lactobacillus plantarum subsp. plantarum ST-III] Length = 625 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 142/650 (21%), Positives = 269/650 (41%), Gaps = 49/650 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I++ IGQYV + N + CPFH+E+TPSF N+ K Sbjct: 4 RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CFSC G+ SF+ L SF E+V ++A + LP K++ Q DL Sbjct: 59 FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++L + + H L + YL ERG+D I+ F +GYAP + L + ++ Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 + + ++GL I+ DRF +R++FPI+ + G+VIAF GR L K KYLN Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+K L+NF A ++ ++L EG+MDV++ ++G+QN V Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LT+ Q+ +L +++ + +C+D D PG +A +A+ L+ + V + + Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R G+ F + + + + ++ + + Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404 Query: 415 IKDQKLRYYYS-----------QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + Y ++ +L+ L + G+ + Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGHSDEPQVAPPPAPAPLGP 464 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + E LL L+N + +A + ++ Q++ + Sbjct: 465 PPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYAE 523 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + F F + + ++ L+ + ++ + Sbjct: 524 AYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLVN 572 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + L Q + ++ G + L L +++ Q Q++ Sbjct: 573 VIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 622 >gi|296387083|ref|ZP_06876582.1| DNA primase [Pseudomonas aeruginosa PAb1] Length = 443 Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats. Identities = 154/444 (34%), Positives = 234/444 (52%), Gaps = 21/444 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ + + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVEVVSSRIQLKKTGKN-----YSACCPFHKEKTPSFTVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLIR 119 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L Sbjct: 60 YCFGCGAGGNALGFVMDHDQLEFPQAVEELAKRAGMDVPREERGGRGHTPRQPTDSPLYP 119 Query: 120 LIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A +F+ +LK+ K YL RG+ F LG+AP +L +HL Sbjct: 120 LLSAAAEFYKQALKSHPARKAAVNYLKGRGLTGEIARDFGLGFAPPGWDNLLKHLGGDNL 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++AGLL++ ++ YDRFR+R++FPIR SRG++IAFGGR L + KYLNSPE Sbjct: 180 QLKAMLDAGLLVENSDTGKRYDRFRDRVMFPIRDSRGRIIAFGGRVL-GDDKPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + A + I++VEGYMDV++L Q G++N V++L Sbjct: 239 TPVFHKGQELYGLYEARQKNRDL----------DEIMVVEGYMDVIALAQQGIRNAVATL 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA +E ++ L++L P I+ CFDGD G +AA++A++ VL +L G RV F+ L GED Sbjct: 289 GTATSEEHIKRLFRLVPSILFCFDGDQAGRKAAWRALESVLPNLQDGKRVRFLFLPEGED 348 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS +R G+ AF + ++ PL + +++ T + +A L + I Sbjct: 349 PDSLVRAEGEDAFRARITQQAQPLAEYFFQQLMLEADPATLEGKAHLATLAAPLLEKIPG 408 Query: 418 QKLRYYYSQAIRDRLQQLFQKYIT 441 LR Q + + + Sbjct: 409 NNLRLLMRQRLSEITGLSGENIGQ 432 >gi|189347446|ref|YP_001943975.1| DNA primase [Chlorobium limicola DSM 245] gi|189341593|gb|ACD90996.1| DNA primase [Chlorobium limicola DSM 245] Length = 632 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 177/653 (27%), Positives = 283/653 (43%), Gaps = 42/653 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I D+ I ++I YV N + A PF EKTPSF + K Y Sbjct: 2 IPQSVIDDIRQRADIVDVISDYVKLQPSGRN-----FKALSPFTQEKTPSFVVSPDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ SF+ + F E+V+ A AGV + K + + + Sbjct: 57 KCFSTGKGGNVFSFIMEMERVQFPEAVEIAAKRAGVDISRFTAKEKGAGHEEDSRTATLR 116 Query: 123 VATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FHH+L K+ Y ERG+ + I F LGYAP+S L ++ G +E+ Sbjct: 117 WAARQFHHTLMGESGKKGLAYLAAERGLTAQTITSFGLGYAPESWEHLLGEAQRAGIAEK 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 ++ E GL+ + YD FRNR+IFPI S GQV+ FGGRTL ++ KYLNSPE+ Sbjct: 177 QLAELGLVTANRQRNSVYDAFRNRVIFPIFSVGGQVVGFGGRTLRNDPDTPKYLNSPESS 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K K LY A ++K + ILVEGYMDVL+L QAG+ N V+S GT Sbjct: 237 MFEKSKLLYGMHAAKQEIRK----------TETAILVEGYMDVLALHQAGITNAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT +Q +++ + + R++ +D D G ++ ID++L G V+L G+DPD Sbjct: 287 ALTRHQAKIMQRYTSRVLFIYDADPAGRKSMMSGIDILLSE---GIVPYVVMLPHGDDPD 343 Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SF+R G+ AF + E+ +D + TE+ F+ PD +A+ + I I D+ Sbjct: 344 SFVRREGREAFMRYTEENRLGFLDFQIRFFTESGDFDQPDTKAKAISAMGRTIALIPDRV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y Q + +L Q K+ A +R + + Sbjct: 404 RRELYMQELSGKLSISMQALRE------SAGKERAVKEPYTSKEERTATAQFRTQDTRSR 457 Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ E L L+ +++ + + +++ + + + E Sbjct: 458 VTILEKTFLKALLESALYGNGVIEFAASHEEMLELPHPAAREILAHMIERYRNSSGDPDE 517 Query: 536 EI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588 I R +L L + W ++A R+ L +K Sbjct: 518 RIDVVTEISRFKSTEARDLASGLLIDQPVSSRWHEQSDAEREHARRCLTAFLDAFKNIIL 577 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE-AMIEG 640 L R+KE + +++ + + + L + E++ I + + AMI G Sbjct: 578 EPLVRRKETVTEKLRR---EDDNNSAVELQKEIIEINATIKKTSADLGAMITG 627 >gi|254523315|ref|ZP_05135370.1| DNA primase [Stenotrophomonas sp. SKA14] gi|219720906|gb|EED39431.1| DNA primase [Stenotrophomonas sp. SKA14] Length = 579 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 182/625 (29%), Positives = 276/625 (44%), Gaps = 50/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL I ++G V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDDLLARTDIVEVVGSRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 Y+CF C G +SFL F+++V LA AG+ +P +P+ +++ +L Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMDVPRNENPRNPQQQDDSRELYSA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ AT FF +L+ + ++ YLD RG+D F++GYAPD LR+ L + Sbjct: 118 LDAATKFFQKNLEGS--EKARSYLDGRGVDEENRARFQIGYAPDGYSGLRDALGKDERRM 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + AGL D YD+FR+R++FPI RG+VIAFGGR K + KYLNSPET Sbjct: 176 KLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVFEKDDGPKYLNSPETA 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V++LGT Sbjct: 235 LFHKGRELYGLWQVRQANQKIER----------LIVVEGYMDVVSLFQFGVTQAVATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T LL++ +P + CFDGD G RA +KA++ VL + G + F+ L GEDPD Sbjct: 285 ATTPDHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPDGEDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +R G AF + + ++ PL + T + T D +A L K + I D Sbjct: 345 TIVRKEGADAFNERLKQATPLSQFFFDELTREINLGTLDGKARLAERAKPMLAQIPDGAF 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Q + G + R Q + + SLV+G Sbjct: 405 GDLMKQQLAQLTG---------LGGNAASARAPMPQRQPARTIQPVAKRSLVRGA----- 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ P++ + ++ L ++ + + Sbjct: 451 -------IAVLLQQPSLALTLGGQHHFQGLRLPGVEL-LLELLGLVEQRPDISTGALLEH 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 R L L Q S T E A+A ++ L+ R +E + K Sbjct: 503 FDGREEQASLHTLAAQTLPGTEASWTQE---------LHDAVAQLEKQLLVQRLEELLAK 553 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 Q Q + + L+ + Sbjct: 554 QRQQGLDDTDKYELRELLKARAGLR 578 >gi|282934649|ref|ZP_06339892.1| DNA primase [Lactobacillus jensenii 208-1] gi|281301224|gb|EFA93525.1| DNA primase [Lactobacillus jensenii 208-1] Length = 595 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ I I ++I QYV ++R DY CPFH EKTPSF ++ K F Sbjct: 4 RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ SF+ G SF E+V +A +A + +P + + K + L ++ Sbjct: 59 FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 115 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DFFH L + +R Y ER + +E F++GYAP+S + L LR KG+ + Sbjct: 116 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + ++GL + +DRFR+RL+FP+ G ++ F GR +S + KYLNSPET Sbjct: 176 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++ A + + ++L EGYMDV++ +AG++ ++S+G Sbjct: 235 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL ++S I++ +DGD+PG A +A + + G +V V L G DP Sbjct: 285 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + ++ D KR +F+ E+ I + + Sbjct: 343 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ GR + R + Q + V + Sbjct: 403 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P+L L ++ + + + KL + Sbjct: 463 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 518 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L + + + + + + +V LA K+ R+ ++ Sbjct: 519 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 565 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 Q+ + + ++ + ++ Sbjct: 566 MQLQDAQRRQDEDQVLKTLEMIINAKR 592 >gi|120599856|ref|YP_964430.1| DNA primase [Shewanella sp. W3-18-1] gi|146292208|ref|YP_001182632.1| DNA primase [Shewanella putrefaciens CN-32] gi|120559949|gb|ABM25876.1| DNA primase [Shewanella sp. W3-18-1] gi|145563898|gb|ABP74833.1| DNA primase [Shewanella putrefaciens CN-32] Length = 574 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 177/627 (28%), Positives = 298/627 (47%), Gaps = 55/627 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P ++ + + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFIDAIEDLAGQLGLEVPREQGTGKRHDDGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ +DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASRYFQNQLRQHQDKQKVIDYLAYRGLSDDVVEHFGIGFAPDGWDGLLGRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI +++ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLI-ANDNGKRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------DKVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + +V C+DGD G AA++A++ L L PG++V F+ L + ED Sbjct: 284 GTSTTAEQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGDQVRFMFLPQAED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE L+ ++ L + L+ +++ L I I+D Sbjct: 344 PDSMVRKIGKEAFETLMGSAIALPEFLFDTLATKY----GTDKSNLAKQAFILIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K + KG L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDMKKKLGFSVKQTKTVAKQGLKGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ HP + + A + L D ++ ++ Sbjct: 448 ------RLAIALLVQHPLLGLGLPPQPALNHLQMPGIDL--LPLLLDLTREQRLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + L +L + + ++ + ++Q L ++ + + ++ +E+ Sbjct: 500 EQFRDNPHSGALHKLAQW---------DHQVADENLLEKFKQTL-VWLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 + Q K E + LIS++ ++ Sbjct: 550 --SLKQTHTKEEKIQLQKLISVMKGLN 574 >gi|315169688|gb|EFU13705.1| DNA primase [Enterococcus faecalis TX1342] Length = 628 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQGNSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|221212354|ref|ZP_03585331.1| DNA primase [Burkholderia multivorans CGD1] gi|221167453|gb|EED99922.1| DNA primase [Burkholderia multivorans CGD1] Length = 621 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 174/653 (26%), Positives = 276/653 (42%), Gaps = 62/653 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------DPKIEKKEK 112 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGAGGDYPAPVSKS 116 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---SL 169 + T L ++ A D++ L+ YL RG+ F LGYAPD + Sbjct: 117 VATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEAA 174 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + R E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L GE Sbjct: 175 FPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSGE 234 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 P-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQL 283 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 GFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTIR 343 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ L DPDS++R +G AF + ++PL L ++ + P+ RA+ K Sbjct: 344 FLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDAK 403 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + LR I DRL F++ R Sbjct: 404 PLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAPR 448 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E L TL+ HP I E + +L++ + Sbjct: 449 QAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARAL 508 Query: 530 KYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ-- 579 + + + E+ +++ D VRD L + EA R+ + Sbjct: 509 GDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERIA 568 Query: 580 ----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 GEELQAAVLKVRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 619 >gi|307324813|ref|ZP_07604019.1| DNA primase [Streptomyces violaceusniger Tu 4113] gi|306889695|gb|EFN20675.1| DNA primase [Streptomyces violaceusniger Tu 4113] Length = 652 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 148/672 (22%), Positives = 271/672 (40%), Gaps = 59/672 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ +KG CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRAAVPIDAVVSEYLQLRNGGGGNLKGL----CPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 YYCF C GD + F+ + SF E+++RLA+ AG+ L + +++ +T L+ Sbjct: 60 YYCFGCQEGGDTVDFVMKIDHLSFAETIERLASQAGITLRYEEGGYTPGRQQGERTRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ L+ + +L ERG D A + F +GY+P L +LR +GF+ Sbjct: 120 AHKAAAQFYVEQLERPEAEIGRTFLAERGFDQAAAQHFGVGYSPAGWDHLVRYLRGRGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++I +GL+ + DRFR RL++PIR G+V+ FG R L ++ KYLN+PE Sbjct: 180 DKELILSGLVQE--GRRGPIDRFRGRLMWPIRDISGEVVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K+ R ++VEGY DV++ AGV +++ Sbjct: 238 TPLYRKSQVLYGIDLAKKDIAKASRA----------VVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA +++L +L +V FDGD G +AA +A + + Sbjct: 288 GTAFGGDHIKILRRLLMDNSGAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAIT 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ L + ++ + +T RA + Sbjct: 345 PGGMDPCELRLAEGDEAVRTLVETRTQLFEFAIRQILARHNLDTAVGRAAALEEAAPVVA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-------------RDQK 460 IK+ +++ + + L L +++ W + Sbjct: 405 GIKNGSIQHESAVHLAGLLGILDTQFVVRRVSQLARWARERGRGSGGEQRGRPGGVPAGD 464 Query: 461 GPSQRLMQSSLVKG-------------KLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 GP R + +G L L E LL + +P ++ + Sbjct: 465 GPQYRHRREPEAQGDPGAPAPPRGPRLDLRSPAHLAERELLKCALQYPQLVSPTFDAFGA 524 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + ++ + + R+ + + ++ L ++ L + Sbjct: 525 DEFTAAPYARVRMAIAEAGGTAGA--DADYLVRVRDVAPDDTVRGLILELTVEPL--SLP 580 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-- 625 ++ + Y R + + R+ E+ + ++ +A + L + Sbjct: 581 RRRQREIDRTYVGQWLAAVRLQAVDRRIGEVHAGVQRLGPYADAASLSAFQEELKALQVY 640 Query: 626 IQIHQIESQEAM 637 + ++ EA+ Sbjct: 641 REGLRVRGAEAL 652 >gi|297206048|ref|ZP_06923443.1| DNA primase [Lactobacillus jensenii JV-V16] gi|297149174|gb|EFH29472.1| DNA primase [Lactobacillus jensenii JV-V16] Length = 598 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ I I ++I QYV ++R DY CPFH EKTPSF ++ K F Sbjct: 7 RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ SF+ G SF E+V +A +A + +P + + K + L ++ Sbjct: 62 FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 118 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DFFH L + +R Y ER + +E F++GYAP+S + L LR KG+ + Sbjct: 119 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + ++GL + +DRFR+RL+FP+ G ++ F GR +S + KYLNSPET Sbjct: 179 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++ A + + ++L EGYMDV++ +AG++ ++S+G Sbjct: 238 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL ++S I++ +DGD+PG A +A + + G +V V L G DP Sbjct: 288 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + ++ D KR +F+ E+ I + + Sbjct: 346 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ GR + R + Q + V + Sbjct: 406 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 465 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P+L L ++ + + + KL + Sbjct: 466 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 521 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L + + + + + + +V LA K+ R+ ++ Sbjct: 522 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 568 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 Q+ + + ++ + ++ Sbjct: 569 MQLQDAQRRQDEDQVLKTLEMIINAKR 595 >gi|187934139|ref|YP_001885114.1| DNA primase [Clostridium botulinum B str. Eklund 17B] gi|187722292|gb|ACD23513.1| DNA primase [Clostridium botulinum B str. Eklund 17B] Length = 592 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 164/627 (26%), Positives = 284/627 (45%), Gaps = 45/627 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I+ + I ++I + V R N + CPFH++KTPSF + K Sbjct: 1 MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHNDKTPSFSVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFSC G+ L+F+ +F+E+V+ LA +P+ + + + K + L ++ Sbjct: 56 IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLADKVNIPINLHSNETPQFIKKREILYKI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ +L+ + Y RGI I+ F LGY+ +S L +LR KG+ + Sbjct: 116 NVETGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRAKGYKD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +IEAGL+ YDRFRNR++FP+ +G+VI FGGR L KYLNSPET Sbjct: 174 DFLIEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NLY A+ K ++I+VEGYMD+++L Q GV NVV+SLGT Sbjct: 233 VFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q +LL + + +++ +D D G A + +++ G V +++ +G+DPD Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R GK AF KL E+LPL++ KR E + + + + + + + + Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVASILADL-NPVE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S +K + ++K K + Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKKQKEDNYVNKKEEF-------GTKLYVEPAY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ALL ++N I + ++ + + ++++S + E Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSEDFILDSHKRIYSLILESKNEN----------- 499 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEI 598 ++ Q+ + W A E I+D+ + + L + ++ Sbjct: 500 --SNNIESYVENRCDQIESSKEWIAIKELEILDLSNKDKLINDYLNEVKCFKLQLEINDL 557 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 + + ++ KG E++ L L + Sbjct: 558 KNEQKRLEDKGMIEESIKLAVKLTNLE 584 >gi|304415464|ref|ZP_07396112.1| DNA primase [Candidatus Regiella insecticola LSR1] gi|304282693|gb|EFL91208.1| DNA primase [Candidatus Regiella insecticola LSR1] Length = 588 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 180/630 (28%), Positives = 289/630 (45%), Gaps = 55/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRGFINDLLARTDIIDLIDTRVKLKKKGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL + F+ES++ LA I G+ +P + ++ + ++ Sbjct: 59 YHCFGCGAHGNAVDFLISYDRLEFVESIEELATINGMTVPYEQGTGASQVEKHQRQNIYA 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ +F+ SL + + + YL++RG++ I F +G+AP +L + + Sbjct: 119 LMNQIGEFYQQSLNSPPAHQAYRYLEQRGLNKAIIHHFAIGFAPPGWDNLLKRFGNSNET 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + AG+L+ +N+ YDRFR R++FPIR RG++IAFGGRT KYLNSPET Sbjct: 179 RTTLNHAGMLV-TNNTKRCYDRFRERIMFPIRDKRGRIIAFGGRT-VDDSVPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY ++ V++ + S ++LVEGYMDV++L Q G+ V SLG Sbjct: 237 EIFRKSRQLYGWYE----------VQVKQPNPSRLLLVEGYMDVVALAQFGIDYAVGSLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T L+LL++ + +V C+DGD G AA++ + L +L G ++ F+ L GEDP Sbjct: 287 TATTAEHLQLLFRTTDHVVCCYDGDKAGRSAAWRTLITALPYLNDGRQLRFMFLPEGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR GKTAFE+LI ++ PL L++ ++PD RA+L IN + + Sbjct: 347 DTLIRREGKTAFEQLIDQAQPLSKFLFETLMLQVDLSSPDGRAKLSTLALPLINQVPGET 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y Q + +L + + R K + Sbjct: 407 LRLYLRQELGHKLGIPDDSLLDKLIPRQVAASNTYRRPQIKPTTM--------------- 451 Query: 480 PSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ HP + Q + + L+ L + Q ++ Sbjct: 452 -----RILIALLVQHPHLAASVPSLQGIKQAKLAGLP---LFIELVETCLAQPDLNTGQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ + + + L++L +W+ I V + AL + L + E Sbjct: 504 LEQYRDNKYSKQLEKLA-------IWNDIEIKEI--VETTFLDALH-HLFDSALEERLEI 553 Query: 598 IEKQIAQVTAKGEAEKTA-ILISILHEVHI 626 + + E+ LI+ Sbjct: 554 LIARARTAQGLSAEERQEVRLINEARGKKK 583 >gi|269215370|ref|ZP_06159224.1| DNA primase [Slackia exigua ATCC 700122] gi|269131226|gb|EEZ62300.1| DNA primase [Slackia exigua ATCC 700122] Length = 626 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 169/647 (26%), Positives = 261/647 (40%), Gaps = 46/647 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P I+ + + ++G V +R D+W CCPFH+EKTPSF + + Sbjct: 3 SIPEGDIRRVREASDLVAIVGDRVQLRQRGR-----DFWGCCPFHNEKTPSFKVDPTTQL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++CF C GD +SF+ + F ++V+ LA AG+ + DPK + L Sbjct: 58 WHCFGCGEGGDVISFVMKIDDLGFADAVRFLAQRAGIQI-AEDPKAAAFRGKKARLKEAC 116 Query: 122 EVATDFFHHSLKNAR---DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F+H L +R YL R + + LGYAP R SL HL KGF Sbjct: 117 EAAAEFYHLQLMRSREDGAASARAYLASRDMGGSVPNRWNLGYAP-GRQSLVRHLSAKGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +++I+A L + DRF R++FPIR + G IAFGGR + KGE KYLN+ E Sbjct: 176 ASKELIDANLALVSKKDGRLRDRFYERVMFPIRDADGDTIAFGGRVIGKGEP-KYLNTQE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHK + L+ A + S+ ++VEGY DV+ L ++GV+N V++L Sbjct: 235 TPLFHKSRVLFGLDVAKAAMA----------STGIAVIVEGYTDVIMLHESGVKNAVATL 284 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVL 352 GTALT +R L RIV FDGD+ G RAA +A ++ + Sbjct: 285 GTALTVQHVRQLSRHAKQRIVYLFDGDEAGQRAADRAARFIDESMLPEAGRKQVGLFACT 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L DP F+ G LI + PL+ R+ R + E++ + + Sbjct: 345 LPDNLDPADFVSQRGADELRSLIDRATPLLRYAIDRKLARRDLSDFTEKSSALPEVIELL 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 IK L Y+ + DRLQ + + PS + Sbjct: 405 APIKHSLLAQEYATYLADRLQVDPSVVTAKLAAAKVSAPAGEEPTPMPVPSGTGEGDAAA 464 Query: 473 K------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ E L HP I LA + + + L S Sbjct: 465 PVADRTLAPRDRERLRIEREFLSLCARHPQIGIAYAAPLASTSWASRRHAAVSEALLSVL 524 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E LP EI + G + L + D+ + L+L Sbjct: 525 AEHPGALPAEIIDAVDAACPGS--RSLLTAAS------LYDDMEPADLACFLTEELSL-- 574 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R L R + Q+ A + +L + + + ++ ++ Sbjct: 575 --RDLERTILTLTSQLKN-DADLSEDDYGLLYASVASMQKELAELRR 618 >gi|319638162|ref|ZP_07992925.1| DNA primase [Neisseria mucosa C102] gi|317400435|gb|EFV81093.1| DNA primase [Neisseria mucosa C102] Length = 590 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 186/629 (29%), Positives = 297/629 (47%), Gaps = 48/629 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P V + +++K Q Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKKQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A DF+ LK + YLD+RG+ + I + LGYAPD L + + Sbjct: 117 LEETTAAAADFYAQQLKFNPAAKA--YLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--Q 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++ G++ID N YDRFR+R++FPIR+ RGQVI FGGR L KYLNS Sbjct: 173 PYPNTALVDTGMVID--NEGKHYDRFRHRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + ++++ R I++VEGYMDV++L Q G+ V+ Sbjct: 230 PDTPLFDKGKNLYGLYEGRAAVKEAGR----------ILVVEGYMDVVALAQFGIGYGVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 ALGTATTAEHVKILMRQADSIYFCFDGDGAGRKAAWRALENALPQLKDDKSLHFLFLPEE 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS+IR YGKT FE L+ +S PL + W+ ++ + NT + +AEL + I Sbjct: 340 HDPDSYIRTYGKTQFEDALLNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L Y Q + + + K++ + + K P + Q +++ Sbjct: 400 TAPALGYLLKQKLSELVGIDPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--- 454 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +L + + LIN PA +L D + + L + + Sbjct: 455 -----TLVQRQIRSLLIN-PAWASYI--DLPDYLALSGDFACLANLAETIKNHATIPATA 506 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + E + Q+ + E + + G ++ L K Q Sbjct: 507 QVLEYMRGSPYEETVNQIFLSTLHSEEMEGDDEEDCESFQIGMKKLLNELK-----YSQI 561 Query: 596 EEIEKQ-IAQVTAKGEAEKTAILISILHE 623 E ++++ I + E L++ Sbjct: 562 ETLKQKSIQTGLTENEKRLLLSLLTAKQN 590 >gi|255975890|ref|ZP_05426476.1| DNA primase [Enterococcus faecalis T2] gi|307278113|ref|ZP_07559197.1| DNA primase [Enterococcus faecalis TX0860] gi|255968762|gb|EET99384.1| DNA primase [Enterococcus faecalis T2] gi|306505510|gb|EFM74696.1| DNA primase [Enterococcus faecalis TX0860] Length = 628 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEKQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|251777737|ref|ZP_04820657.1| putative DNA primase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082052|gb|EES47942.1| putative DNA primase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 592 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 166/627 (26%), Positives = 285/627 (45%), Gaps = 45/627 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I+ + I ++I + V R N + CPFH +KTPSF + K Sbjct: 1 MQIPQEIIEKVKEQTDIVDIISESVRLKRTGKN-----FIGLCPFHSDKTPSFSVSQEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFSC G+ L+F+ +F+E+V+ LA A +P+ + + + K + L ++ Sbjct: 56 IYKCFSCGEAGNVLTFIMKQKNLTFVEAVKYLANKANIPMNLHSNETPQFIKKREILYKI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ +L+ + Y RGI I+ F LGY+ +S L +LR KG+ + Sbjct: 116 NVETGRYYFTNLQKIHLAKD--YFLNRGIKEATIKKFGLGYSKNSWRDLITYLRTKGYKD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL+ YDRFRNR++FP+ +G+VI FGGR L KYLNSPET Sbjct: 174 DFLLEAGLVSKNQEKGNIYDRFRNRVMFPVFDVKGRVIGFGGRVL-DDSKPKYLNSPETT 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NLY A+ K ++I+VEGYMD+++L Q GV NVV+SLGT Sbjct: 233 IFQKGINLYGLNFAVKNKLK----------EDYMIIVEGYMDLITLHQYGVTNVVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q +LL + + +++ +D D G A + +++ G V +++ +G+DPD Sbjct: 283 ALTNNQAKLLKRYTNNVIISYDADIAGQTATLRGLEI---LRNSGFEVKVLIIPQGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R GK AF KL E+LPL++ KR E + + + + + + + Sbjct: 340 EFVRSNGKDAFLKLAREALPLIEYRIKRIGEGINLKDRNNLIKYGEKVAKILADL-NPVE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S +K + ++K + K + Sbjct: 399 KDVYIKKISEDTGIKEQALYDLLSQVMSKKQKEDNYVNKK-------EDFGTKLYVEPAY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ALL ++N I + ++ + + ++++S + E + + R Sbjct: 452 LKAERALLKLMLNQ-EIYDQIKDSMSSGDFILDSHKRIYSLILESKNENSNNIESYVENR 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEI 598 E + + W A E I+D+ + + L + E+ Sbjct: 511 CDE-------------IESSKEWIAIKELEILDLSNKDKLINDYLNEVKCFKLQLEINEL 557 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 + + ++ KG E++ L L + Sbjct: 558 KNEQKRLEDKGMIEESIKLAVKLTNLE 584 >gi|116748653|ref|YP_845340.1| DNA primase [Syntrophobacter fumaroxidans MPOB] gi|116697717|gb|ABK16905.1| DNA primase [Syntrophobacter fumaroxidans MPOB] Length = 601 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 168/626 (26%), Positives = 276/626 (44%), Gaps = 53/626 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + I +++GQ V R + CPFH EKTPSFH + YYCF C Sbjct: 5 VKQAVDIVDVVGQVVQLRRSGN-----RHLGLCPFHQEKTPSFHVDAENQLYYCFGCGSG 59 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-------PKIEKKEKIQTDLIRLIEV 123 GD L+F+ +F E+++ LA + LP D IE K + +L R++ Sbjct: 60 GDVLNFVMKHRNVAFGEAIRYLAERYHIALPERDHVEGATPGAIESARKEREELYRILRS 119 Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A DFF+ L + + Y+ RG+ + +E ++G+AP S SL HL G+ E Sbjct: 120 AADFFYDQLHHSPEGRIAREYIARRGLPAEVVETERMGFAPQSWDSLSRHLANLGYDVEP 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPETI 240 I AGLL YDRFRNRLIFPIR G+++AFGGR+LS + KYLNSPET Sbjct: 180 GIGAGLLARSTGKDRVYDRFRNRLIFPIRDEGGRIVAFGGRSLSADLKDEPKYLNSPETA 239 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HKG+ LY A + +LVEGYMD+L+ G VV++LGT Sbjct: 240 VYHKGRLLYQLARAREACR----------QVRQTVLVEGYMDLLAFHARGFFRVVATLGT 289 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT +Q+R+L ++S +V+ +DGD+ G +A + + L L V+ V G DPD Sbjct: 290 ALTPHQVRILSRMSDEVVMAYDGDEAGDKAMLRGLPL---FLQENVAVSCVRFPDGMDPD 346 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R G FEKL+ L KR + + R ++ L+ + ++ L Sbjct: 347 DFLRRDGLEGFEKLLRSRQELGAYAVKRILDG-WDGSASARLKIAAELRPIFDAVRQPLL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + DRL + + R ++ + + + Sbjct: 406 KSEYLRLAADRLCVSEEVLNQQLRHDRRTPERPYSRSYRTPVLPGI-----------SET 454 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQ 539 E +L LI +P ++++ A + +L+ L L + F ++ Sbjct: 455 QTLEEKILRLLIRYPDLIEQADSSGALEYFQEPKLRALAMVLVGTPHAPESEFNASIVYD 514 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + E+ + A + + R L R R L ++ +++ Sbjct: 515 ELADPESKEMFTRFM-----------LESAELAEPRVQLNDWLIALTR-RELKQRSLDLD 562 Query: 600 KQIAQVTAKGEAEKTAILISILHEVH 625 + +G++++ ++ + ++ Sbjct: 563 TALKAAVREGDSDRVRHILVEIQNLN 588 >gi|284008588|emb|CBA75167.1| DNA primase [Arsenophonus nasoniae] Length = 597 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 166/622 (26%), Positives = 279/622 (44%), Gaps = 53/622 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 21 RIPRTFINDLLARTDIVDLIDTKVPLKKQGKN-----HHACCPFHNEKTPSFTVNGDKQF 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+++ LA + G+ +P + + + +L + Sbjct: 76 YHCFGCGAHGNAIDFLMNYDKLDFVETIEELATLHGLEIPYETGNSSNQIERHQRQNLYQ 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ F+ SL ++ YL +RG+ I F +G+AP +L +H + S Sbjct: 136 LMNEVNQFYQRSLNKLDSQKAKQYLIQRGLSDEVIHRFSIGFAPTGWDNLLKHFAKHAES 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++ AG+L+ +N+ +YDRFR R++FPIR RG+V+AFGGR L KYLNSPET Sbjct: 196 HKQLDAAGMLV-TNNNGRTYDRFRERIMFPIRDRRGRVVAFGGRVL-DDTLPKYLNSPET 253 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A + +++VEGYMDV++L Q G+ V+SLG Sbjct: 254 EIFHKGRQLYGLYEATQNNPALSK----------LLVVEGYMDVVALAQFGINYAVASLG 303 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ C+DGD G AA++ ++ L +L G ++ F+ L GEDP Sbjct: 304 TSTTAEHIQLLFRTTDTVICCYDGDKAGREAAWRTLETALPYLSDGRQLQFMFLPDGEDP 363 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS IR GK FE+ + +S L L+ + + +A+ I + Sbjct: 364 DSLIRKEGKANFEQRMDKSHSLSTFLFDTLVAQVDLASHEGKAKFNRLAIPLIKKVPGDT 423 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ Y +Q + + I G K N + K + Sbjct: 424 LQLYLAQELGSFIGIPDTSRILAMIEKGLAEKTNYQAPKIKTTTM--------------- 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + L I++ L+ L ++ + Sbjct: 469 -----RILIALLVQNPNFVS-LIPTLDGIKHSQLPGLMLFLELVELCQSHPGITTGQLLE 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 F + L++L + I ++ + + + L + E + Sbjct: 523 CYRNNKFVKQLEKLATW----------NDIEIEEIAEKMFKDALEHLFITALDERFESL- 571 Query: 600 KQIAQVTAKGEAEKTAILISIL 621 IA+ +G + + ++ Sbjct: 572 --IAKERTEGLTSEEREEVRLI 591 >gi|81428493|ref|YP_395493.1| DNA primase G [Lactobacillus sakei subsp. sakei 23K] gi|78610135|emb|CAI55184.1| DNA primase G [Lactobacillus sakei subsp. sakei 23K] Length = 627 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 158/656 (24%), Positives = 276/656 (42%), Gaps = 60/656 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I ++ I +++GQYV + N + CPFHDEKTPSF ++ K Sbjct: 4 KIPNEVIDEIRSQTNIVDVVGQYVQLKKAGKNL-----FGVCPFHDEKTPSFSVSEEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 ++CFSC G+ FL L SF E++ ++A AGV L + ++ T + Sbjct: 59 FHCFSCGRGGNVFKFLMELEQISFPEALTKVADFAGVTLADSYKPTAVHRESSEVTQFKQ 118 Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + A + F H L + + YL ER + IE F +GY PD L + K Sbjct: 119 LYQQANELFKHILTSTVAGQPALDYLHERQMTDALIETFSIGYLPDQSDLLLTFFQNKDI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 + + ++GL I+ +DRF R++FPIR+++G+VIAF GR L + + KYLNSP Sbjct: 179 PYQVLRQSGLFIETQTG-KLHDRFSGRVMFPIRNAQGEVIAFSGRVLTKQPDQPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET++F+K K L+N+ A + +S + + L EG+MDV++ A V N V+S Sbjct: 238 ETVIFNKRKVLFNYDLAKQTIHQSKK----------VYLFEGFMDVIAAYSADVVNGVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT QL LL + + +V+C+DGD PG+ A +AI+L+ H V V+L G Sbjct: 288 MGTSLTTEQLNLLAQQAQELVVCYDGDQPGIEAMKRAINLLQQHTTLELSV--VVLPGGV 345 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD ++R YG F++ L + + + + + + ++ + + ++ Sbjct: 346 DPDEYVRQYGGPQFKETLQNGTETPIAFELRYLKQGLNLDNEKDQLDYVQQALEVVARVE 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---------- 466 Y + + + P Sbjct: 406 SPLAIEVYLKQVEADSGITLDTLKRQLQTVRVKHATQVPINQVGQPEAPPYFDDFQAPPL 465 Query: 467 -------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 + + K + E +L LI++ + + + AD + + Sbjct: 466 PPEEMAGAFGDPRTIAPKRQPKRLTRIEHAEQEILHMLIHNEDVRLQ-LENNADFSFVHT 524 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 Q L+ S E + + + L + V L EAN Sbjct: 525 PYQLLYELWRSFIAEGQPADIAGFTSYIPD--------DLQQLVVQIDLLDLPEEAN--- 573 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ LA+ + + + +E + + + T G + L + + ++ Q+ Sbjct: 574 -QEALNDCLAVIGK-NSIQERLKEAKIALKEATKLGNHSEELRLTNEVIQLVSQMK 627 >gi|199598417|ref|ZP_03211836.1| DNA primase (bacterial type) [Lactobacillus rhamnosus HN001] gi|258508507|ref|YP_003171258.1| DNA primase [Lactobacillus rhamnosus GG] gi|199590736|gb|EDY98823.1| DNA primase (bacterial type) [Lactobacillus rhamnosus HN001] gi|257148434|emb|CAR87407.1| DNA primase [Lactobacillus rhamnosus GG] gi|259649817|dbj|BAI41979.1| DNA primase [Lactobacillus rhamnosus GG] Length = 589 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 157/633 (24%), Positives = 267/633 (42%), Gaps = 47/633 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I +L + I++ IGQYV + N + CPFH+E TPSF N+SK + Sbjct: 2 IPEATIDQVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNESKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGIPLDVQVGQAAPVDPEVAKQQHILQ 116 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D +HH L + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLYHHILVNTEKGEAALAYLHKRGLTDETIEEFQLGYAPEERNLLVAFLNNRHVEYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ + G+V+ F GR L +S KYLNSPET Sbjct: 177 DQRASGLFVEDQAG-KLFDRFNDRVMFPLTDANGKVVGFSGRILQLDKSQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDILFNLHRAKAEFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVTMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +IR G AF+ + L + + + + I I D Sbjct: 344 EYIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMHNDQAKLTYLNAALRIIGKISDPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + + + + P+ + + + Sbjct: 404 RAVYVKQLAETTEVPIAALNQSL-----------PSPQTRRPAAAQPPVADQPVRPLDRY 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 453 TAAQRQLLYYVWHDDLVMQRLKN--ATFVFPTPYFQTLFTGWLRFLHEQPDGELAGFLDR 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L + V L A +EA I ++ Q A + + + I++ Sbjct: 511 VNPE-----LSGVAADVAMQSLPEA-SEATIDELIQTITSASTVS--------RLQAIKQ 556 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 557 AITEAQRLGDKQKQGELTVQYVNLMKLLKQQQG 589 >gi|256851183|ref|ZP_05556572.1| DNA primase [Lactobacillus jensenii 27-2-CHN] gi|260660607|ref|ZP_05861522.1| DNA primase [Lactobacillus jensenii 115-3-CHN] gi|256616245|gb|EEU21433.1| DNA primase [Lactobacillus jensenii 27-2-CHN] gi|260548329|gb|EEX24304.1| DNA primase [Lactobacillus jensenii 115-3-CHN] Length = 601 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 152/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ I I ++I QYV ++R DY CPFH EKTPSF ++ K F Sbjct: 10 RIPEDFINEVRNSINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 64 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ SF+ G SF E+V +A +A + +P + + K + L ++ Sbjct: 65 FKCFGCGKGGNVFSFMQYKEGLSFPEAVAEVAKMANLAMP---SGYQSEMKPLSPLKKVH 121 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DFFH L + +R Y ER + +E F++GYAP+S + L LR KG+ + Sbjct: 122 QDACDFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 181 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + ++GL + +DRFR+RL+FP+ G ++ F GR +S + KYLNSPET Sbjct: 182 TVLAKSGLFSQN-ENGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++ A + + ++L EGYMDV++ +AG++ ++S+G Sbjct: 241 EIFNKSKVLFHLKEAKKAAR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL ++S I++ +DGD+PG A +A + + G +V V L G DP Sbjct: 291 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMF--ETVGGFQVGVVSLPEGLDP 348 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + ++ D KR +F+ E+ I + + Sbjct: 349 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAVKLIAPLNNPV 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ GR + R + Q + V + Sbjct: 409 ERDLYVTKLAKKVGVSEDSLKVSLLREGRKLRVAERRKKQYDFEPEEQSKTQVATLHNAN 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P+L L ++ + + + KL + Sbjct: 469 PALV--RLFYLFVHSEKVRNYLLDL--HFLFPDESYAKLAESWLDFEETHDNATINSFYD 524 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L + + + + + + +V LA K+ R+ ++ Sbjct: 525 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKKLDT-QRKISNLQ 571 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 Q+ + + ++ + ++ Sbjct: 572 MQLQDAQRRQDEDQVLKTLEMIINAKR 598 >gi|260434600|ref|ZP_05788570.1| DNA primase [Synechococcus sp. WH 8109] gi|260412474|gb|EEX05770.1| DNA primase [Synechococcus sp. WH 8109] Length = 682 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 171/681 (25%), Positives = 291/681 (42%), Gaps = 71/681 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F L YL E RG+ E F+LGYAPD L +HL+Q Sbjct: 120 QRALALAAGWFRSQLMAPAGAEALKYLSEARGLSPATQETFQLGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + E + AGL++ YDRFR+R++ PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI ++ + + + Sbjct: 289 ASLGTALSSQQITQLCRVSDSKRIVLNFDADGAGVRAANRAIGEVEQLAMQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ G + L+ ++ +D ++ + R + D+ + L + Sbjct: 349 LPSGKDPDEFLKQNGAGDYRALLDQAPLWLDWQIEQVLQERDLSRADQFQQAVTALVGLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R + ++ +S Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSSRHEQPGESG-- 466 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527 + EA LL ++ P QEL + + LW+ + Sbjct: 467 ------QRERCEADLLRLYLHCPRHRATIRQELRKRELEDFAIPHHRHLWAAITDLEETN 520 Query: 528 --------------EQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEAN 570 + + ++ + L ++ L+ +L + L Sbjct: 521 LGEGRMESISRCDDDGEGLDLIDLPRLLTDQLLLESSALVSRLTPLLEPGELQRVALAEP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIA---QVTAKGEAE------KT 614 + +R + KR R L ++ + +E IA A + + Sbjct: 581 LEQLRGIAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQEASSDQASVDMEVRI 640 Query: 615 AILISILHEVHIQIHQIESQE 635 L L+ ++ ++ E Sbjct: 641 QALFDDLNRDALRYQELYYTE 661 >gi|77920270|ref|YP_358085.1| DNA primase [Pelobacter carbinolicus DSM 2380] gi|77546353|gb|ABA89915.1| DNA primase [Pelobacter carbinolicus DSM 2380] Length = 604 Score = 351 bits (901), Expect = 2e-94, Method: Composition-based stats. Identities = 161/632 (25%), Positives = 280/632 (44%), Gaps = 36/632 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++++ I +I YV R N + CPFH EKTPSF+ N + Sbjct: 4 RIADEKVEEIRARADIVEVISSYVSLKRSGRN-----HVGLCPFHAEKTPSFNVNADRQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIR 119 Y+CF C V GD +FL + G +F E+V+RL G+ V P+ E++ + + L+R Sbjct: 59 YHCFGCEVGGDVFAFLMNIEGLAFPEAVRRLGERYGIEVEEEAVSPEEEQRREERERLLR 118 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + EVA DF+H+ LK+ K YL RG D F+LG+AP + +L HLR KGF Sbjct: 119 VTEVACDFYHNLLLKDPSGKPARGYLRRRGFDGDIARQFRLGWAPAAWEALANHLRDKGF 178 Query: 179 SEEKII-EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + GL+ G+ YD FR RL+FPI RG+ +AFGGR L KY+NSP Sbjct: 179 DSKWARDRLGLVRAGNEGRNDYDLFRRRLLFPILDERGRPVAFGGRILEGD-GPKYINSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK + LY + A + ++ I+VEGY D L+L +AG QN V++ Sbjct: 238 ESPIYHKARVLYGLYQARDAMR----------HKGEAIVVEGYFDQLALYRAGFQNTVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT +RLL + + R++L FD D+ G +A ++A+D++L G + V L GE Sbjct: 288 CGTALTPEHVRLLKRFAERVLLLFDQDEAGRKATFRAMDVLLPE---GLQALVVTLDAGE 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+R + + + + P+V++ +R E + RA + + + Sbjct: 345 DPDSFLRNHDAQKMQARLASARPVVEVFIERTLEQ-HGEDIEGRARAVEKILAKLRLLPG 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + + R L ++ + + P Q+ K Sbjct: 404 DIERDLYLKDLASRTG-LDEQLLRSKALPQAVPDPAPSSVPAVRPKPAARQAVPAKKTRR 462 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LL ++ + + ++ +L+ L S E Sbjct: 463 GVAEKAQRILLRLILCYESACDAARNLGLGELFEEGDLRILAERALSVSAESGPVAENMR 522 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L E ++ +G+ + + +++ + + R+ ++ ++ Sbjct: 523 IDDLSES----------QKGLLSGILLEDEGLFAENYDELFRKCHEMVNKERM-KQRLQQ 571 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +++ + + + + + E+ ++ Sbjct: 572 LQELMREAERGQDFTEMTVWQREFQELTRKLK 603 >gi|285017225|ref|YP_003374936.1| DNA primase [Xanthomonas albilineans GPE PC73] gi|283472443|emb|CBA14948.1| probable dna primase protein [Xanthomonas albilineans] Length = 578 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 176/633 (27%), Positives = 271/633 (42%), Gaps = 62/633 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL I +IG V R+ +Y A CPFHDE++ SF + +K F Sbjct: 3 RIPDAFIDDLLARTDIVEVIGTRVPLKRQGK-----EYAARCPFHDERSASFTVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 Y+CF C G +SFL F+++V LA AG+ +P + + DL Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRDAQQRGAAQAAGEDHRDLY 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +E AT FF L + + YLD RG+D+ F++GYAPD +L++ L Sbjct: 118 SALEAATKFFQRQLDTSD--KARTYLDGRGVDAENRARFQIGYAPDGYSALKDALGTDER 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + AGL D YD+FR+R++FPI RG+VIAFGGR L K + KYLNSPE Sbjct: 176 RHKLLDRAGLFSKNDRGH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDDGPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHKG+ LY + QK R +I+VEGYMDV+SL Q GV V++L Sbjct: 235 TALFHKGRELYGLWQVRQSNQKIER----------LIVVEGYMDVVSLFQFGVTQAVATL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T LL++ +P + CFDGD G RA +KA++ VL + G + F+ L GED Sbjct: 285 GTATTPEHAELLFRNAPDVFFCFDGDAAGRRAGWKALESVLPRMKDGRQAFFLFLPEGED 344 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R G AF+ + ++ PL + + + +T D +A L + + I D Sbjct: 345 PDTIVRKEGAAAFDTRLAQATPLSQFFFDELSREINLSTLDGKARLAERARPMLAQIPDG 404 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Q + + P+ ++ S Sbjct: 405 AFGDLMRQRLTELTGI-----------------------GAAAPATTSTSRPPLRPARSA 441 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEE 536 + L+ PA+ + + L +L L + Sbjct: 442 HKRSLVREAIARLLQVPALA---LELTPPYPFAGLRLPGVELLIELLQIVHTRPEITTGA 498 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + ER L++L Q S ++ Q + L ++ + Sbjct: 499 LLEHFHEREELAALQKLVVQEIPGDTASWR-----QELLDVMVQ-----LEKQTLQQRLD 548 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E++ + + E +K + L ++ + Sbjct: 549 ELQAK-QRAQGLDETDKYE--LRELLKILATLR 578 >gi|257089847|ref|ZP_05584208.1| DNA primase [Enterococcus faecalis CH188] gi|300861317|ref|ZP_07107404.1| DNA primase [Enterococcus faecalis TUSoD Ef11] gi|307275000|ref|ZP_07556163.1| DNA primase [Enterococcus faecalis TX2134] gi|312900721|ref|ZP_07760018.1| DNA primase [Enterococcus faecalis TX0470] gi|312903268|ref|ZP_07762448.1| DNA primase [Enterococcus faecalis TX0635] gi|256998659|gb|EEU85179.1| DNA primase [Enterococcus faecalis CH188] gi|295112958|emb|CBL31595.1| DNA primase [Enterococcus sp. 7L76] gi|300850356|gb|EFK78106.1| DNA primase [Enterococcus faecalis TUSoD Ef11] gi|306508448|gb|EFM77555.1| DNA primase [Enterococcus faecalis TX2134] gi|310633144|gb|EFQ16427.1| DNA primase [Enterococcus faecalis TX0635] gi|311292202|gb|EFQ70758.1| DNA primase [Enterococcus faecalis TX0470] gi|315144455|gb|EFT88471.1| DNA primase [Enterococcus faecalis TX2141] gi|315160484|gb|EFU04501.1| DNA primase [Enterococcus faecalis TX0645] gi|315172350|gb|EFU16367.1| DNA primase [Enterococcus faecalis TX1346] gi|315577572|gb|EFU89763.1| DNA primase [Enterococcus faecalis TX0630] gi|327535094|gb|AEA93928.1| DNA primase [Enterococcus faecalis OG1RF] Length = 628 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|260662166|ref|ZP_05863062.1| DNA primase [Lactobacillus fermentum 28-3-CHN] gi|260553549|gb|EEX26441.1| DNA primase [Lactobacillus fermentum 28-3-CHN] Length = 631 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I L + I+++I Q + ++ N CPFH++ TPSF N+ K ++ Sbjct: 4 IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121 YCFSCH GD S+L SF+E+V+++A AGV LP + T L RL Sbjct: 59 YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178 E A+ +HH L N + YL +RG+ I F LG+AP L ++ QKG Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235 + + +GL + +DRF +R+I+PI+++ GQ IAF GR L+K + KYLN Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K + L+N A +K + L EG+MDV+S AGV++ + Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+ T+ Q+ ++ + + ++ +C+DGD G A +A+ + + V L Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD +++ G+ F++ + + + + E + Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404 Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + D R Y Q + L R ++ R Q Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPENSPRQPRQAGTRRYQS 464 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S L K L + LL + ++PA ++ + + + + Q L + Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523 Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 ++ L + ++ Q++++V V + Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 LA+ + +Q E + + A + + L L ++ Q +++++ Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628 >gi|114564159|ref|YP_751673.1| DNA primase [Shewanella frigidimarina NCIMB 400] gi|114335452|gb|ABI72834.1| DNA primase [Shewanella frigidimarina NCIMB 400] Length = 575 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 180/626 (28%), Positives = 302/626 (48%), Gaps = 55/626 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I I +LI + V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELIARIDIVDLIDRKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P ++ ++ + DL Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLEFVDAIEELAGQLGLAVPREQGTGKRPDQGLSRDLYE 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A F+ L+ DK+ YL+ RG+ S +E F +G+APD L RQ Sbjct: 116 LMEEANLFYQSQLRQHTDKQKVVDYLEFRGLSSDVVEQFGIGFAPDGWDGLLGRYRQNLP 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG+LI ++S YDRFR+RL+FPIR RG+V+ FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMLI-ANDSGKRYDRFRDRLMFPIRDRRGRVVGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q G+ V+SL Sbjct: 234 TPIFHKGNELYGLYELKQKHRDP----------QHVLIVEGYMDVVALAQFGIDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++V C+DGD G AA++A++ L L PG++V F+ L +GED Sbjct: 284 GTSTTAEQFQLLVRSAKQVVCCYDGDRAGREAAWRALETALPLLKPGDQVKFMFLPQGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK AFE L+ +++ L + L+ + N ++ L I ++D Sbjct: 344 PDTMVRKIGKEAFEALMQKAMLLPEFLFDTLSANH----GTDKGALAKQAIALIEKVQDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + + +L + + + G+ K + +G L Sbjct: 400 VLQNLLLENLAHKLGMNSSEDLKKKLGFTVKQAKPLNAKGLQGRGTPL------------ 447 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+ +P++ ++ A R ++ L + L EQ ++ Sbjct: 448 ------RLAIALLVQNPSLGFGLAKQPALDRLQMTGIE-LLNHLLDITREQ-TLNSAQLL 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E L +L + + E ++Q L + + + ++ +E+ Sbjct: 500 EMHREHNQKSTLIKLAQWEHQVADENVLPE---------FKQTLI-WLNNQYIEQRYQEL 549 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + Q K E + LISI+ + Sbjct: 550 --SLKQALTKVEKMQLTKLISIMKGI 573 >gi|327458598|gb|EGF04946.1| DNA primase [Streptococcus sanguinis SK1057] Length = 602 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 142/634 (22%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL V + ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLAVETAGNDRLRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAAASDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHIQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPTHQSQPVVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +++HP ++ QY+ D +D+ +LQ L+ L ++ E Sbjct: 468 RLSRLMKAENHIFHRMMHHP-LILNQYRLREDFVFDSEDLQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L + + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEFLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|260580979|ref|ZP_05848802.1| DNA primase [Haemophilus influenzae RdAW] gi|260092338|gb|EEW76278.1| DNA primase [Haemophilus influenzae RdAW] Length = 593 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRVNHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+ + + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLMQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|229545862|ref|ZP_04434587.1| DNA primase [Enterococcus faecalis TX1322] gi|256853087|ref|ZP_05558457.1| DNA primase [Enterococcus faecalis T8] gi|229309017|gb|EEN75004.1| DNA primase [Enterococcus faecalis TX1322] gi|256711546|gb|EEU26584.1| DNA primase [Enterococcus faecalis T8] gi|315029423|gb|EFT41355.1| DNA primase [Enterococcus faecalis TX4000] Length = 628 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 166/649 (25%), Positives = 291/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + +++ R Y I Q ++ + R ++ R R + Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPP 465 Query: 467 -------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|315147226|gb|EFT91242.1| DNA primase [Enterococcus faecalis TX4244] Length = 628 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|148380890|ref|YP_001255431.1| DNA primase [Clostridium botulinum A str. ATCC 3502] gi|153932187|ref|YP_001385199.1| DNA primase [Clostridium botulinum A str. ATCC 19397] gi|153936638|ref|YP_001388668.1| DNA primase [Clostridium botulinum A str. Hall] gi|168179369|ref|ZP_02614033.1| DNA primase [Clostridium botulinum NCTC 2916] gi|148290374|emb|CAL84501.1| DNA primase [Clostridium botulinum A str. ATCC 3502] gi|152928231|gb|ABS33731.1| DNA primase [Clostridium botulinum A str. ATCC 19397] gi|152932552|gb|ABS38051.1| DNA primase [Clostridium botulinum A str. Hall] gi|182669543|gb|EDT81519.1| DNA primase [Clostridium botulinum NCTC 2916] Length = 590 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIRSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK A+ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKEAYLKLVKEALPLIEYKIKISKQDLNIGNKRQVIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE + K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ ++T + L +V + ++ Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590 >gi|307292034|ref|ZP_07571903.1| DNA primase [Enterococcus faecalis TX0411] gi|306497032|gb|EFM66580.1| DNA primase [Enterococcus faecalis TX0411] Length = 628 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 166/649 (25%), Positives = 291/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVVDTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + +++ R Y I Q ++ + R ++ R R + Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQRFYQDEMMPP 465 Query: 467 -------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|331701384|ref|YP_004398343.1| DNA primase [Lactobacillus buchneri NRRL B-30929] gi|329128727|gb|AEB73280.1| DNA primase [Lactobacillus buchneri NRRL B-30929] Length = 608 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 145/641 (22%), Positives = 273/641 (42%), Gaps = 44/641 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I+++ + I +++ Q+V + N + CPFH+E+TPSF ++ K Sbjct: 3 KIPEDVIEEIRSQVNIVDVVSQFVQLKQSGKNL-----FGLCPFHEERTPSFSVSEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQT 115 ++CFSC G+ F+ L SF E+V+++A + + + + + Q Sbjct: 58 FHCFSCGRGGNVFKFIMELQNVSFPEAVKKVAEMENISVDEKYFRESGSSQSSPENTQQK 117 Query: 116 DLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 LI L E + +HH L + YL +RG+ I ++LGYAP R L+ Sbjct: 118 ALIDLHEQSVKLYHHILTNTKMGQPALDYLHKRGLTDQTITTYQLGYAPAQR-LLKPFFD 176 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKY 233 ++ + + ++GL + + DRF +R+++PIR+ GQ IAF GR L+ + KY Sbjct: 177 ERKVDFQLLRKSGLFSEDQDG-NLRDRFVDRVMYPIRNGSGQTIAFSGRLLTTDSDMPKY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F+K K L+N A + ++ + IL EG+MDV++ QAG+++ Sbjct: 236 LNSPETDIFNKRKVLFNLDLARSNIR----------TGEPAILFEGFMDVITAFQAGIKS 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GT+LTE Q+ + +++ +V+ +DGD PG +A +AID + + + Sbjct: 286 GIASMGTSLTEQQIYDIKRITREVVISYDGDTPGQKAIKRAID-SFNEQKSNLVMKIISI 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DPD FIR G F++LI + V+ + + ++ ++ I+ Sbjct: 345 PDGMDPDEFIRKKGADDFKQLIDHAQAPVEFELNYLKKQYNLDSEIDQTNYIAEALKLIS 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + R Y + D Q + + R A + + Sbjct: 405 RVDSGISRDLYLNRLADEFSVAKQLLQQQLAPLIRQPAPAAEPHQYH-----KQVQVVKQ 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K E L+ ++++ I + ++ + + + Q L+ F + + Sbjct: 460 QKHFSLVEKAEMQLMNRMLHYHDIWLKV-SNVSGFAFVDEQYQMLYLLAEGYFTKFDDYN 518 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E LL +D E L + + Sbjct: 519 VATFSNLISEDSLQSLLVDIDML-----------ELPDNPTNAEIDSYLNILMHRAPVEE 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ ++ Q G+ +K L + ++ Q +++ Q Sbjct: 568 KLKKKRAELKQAVKIGDVDKQRALTIEIVKLEQQ-KRMKQQ 607 >gi|229846615|ref|ZP_04466723.1| DNA primase [Haemophilus influenzae 7P49H1] gi|229810708|gb|EEP46426.1| DNA primase [Haemophilus influenzae 7P49H1] Length = 593 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINMRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F++ + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSSKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHL---------LDESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|296532786|ref|ZP_06895465.1| DNA primase [Roseomonas cervicalis ATCC 49957] gi|296266894|gb|EFH12840.1| DNA primase [Roseomonas cervicalis ATCC 49957] Length = 629 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 177/555 (31%), Positives = 264/555 (47%), Gaps = 31/555 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P +F+ +L + P++ LIG+ V R + CCPFH EK+PSF+ D Sbjct: 1 MSLPPNFLDELRLRTPLAPLIGRSVKLTRAGRQ-----WRGCCPFHGEKSPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C GD ++++ G SF E+V+RLAA AG+ +P P+ K+E Q DL + Sbjct: 55 -YHCFGCGAHGDAIAYVMQTQGASFPEAVERLAAEAGLEVPKATPQQAKREARQRDLHDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A++ F L+ + YL RG+ I F LG++ R +L L+ +G Sbjct: 114 MAAASEAFQRRLRLPEGRGGLDYLLRRGLSEETIRRFGLGWSGGGRGALAADLKPQGIET 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++EAGL+ G+ + D F NR++FPIR RG++++FGGR L KY+N PET Sbjct: 174 RQLVEAGLMRAGEGDSPPADLFFNRVMFPIRDRRGRIVSFGGRVL-GDGQPKYVNGPETE 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K +NLY A K + +++VEGYMDV++L QAG V+ LGT Sbjct: 233 LFSKRRNLYALDLAREAAFK----------GAPVVVVEGYMDVIALHQAGFGGAVAPLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE QL LW+++P+ VLCFDGD G RAA +A +L L L P ++F L GEDPD Sbjct: 283 ALTEEQLAELWRIAPQPVLCFDGDKAGARAAARAAELALPLLSPERSLSFATLPAGEDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + G AF ++ + PL ++L+ E TP+ RA L L+ I D+ L Sbjct: 343 TLVGRGGPAAFRAVLEAARPLSEVLYGMLAEKHPGTTPEARAALRHALEGAAGSIPDKFL 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + DR + + G + +P Sbjct: 403 AGEYRRQLLDRFFESGRSRPQPGGGGRGFGGGGFGKGGFGKGGFGGRGRPGPPPLALPRP 462 Query: 481 SL--------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-----FV 527 + + LL HP +L E + A + Q+L L S Sbjct: 463 EIDPGQVRQEQARCLLAIAFAHPWLLPEVEEAFAALDLPEGLAQRLQHILLSWPHQHGLG 522 Query: 528 EQKYFLPEEIHQRLC 542 EQ E + L Sbjct: 523 EQGRVEAEALLDHLQ 537 >gi|229550054|ref|ZP_04438779.1| DNA primase [Enterococcus faecalis ATCC 29200] gi|255972834|ref|ZP_05423420.1| DNA primase [Enterococcus faecalis T1] gi|256965162|ref|ZP_05569333.1| DNA primase [Enterococcus faecalis HIP11704] gi|257422657|ref|ZP_05599647.1| DNA primase [Enterococcus faecalis X98] gi|307273263|ref|ZP_07554509.1| DNA primase [Enterococcus faecalis TX0855] gi|312951454|ref|ZP_07770351.1| DNA primase [Enterococcus faecalis TX0102] gi|229304758|gb|EEN70754.1| DNA primase [Enterococcus faecalis ATCC 29200] gi|255963852|gb|EET96328.1| DNA primase [Enterococcus faecalis T1] gi|256955658|gb|EEU72290.1| DNA primase [Enterococcus faecalis HIP11704] gi|257164481|gb|EEU94441.1| DNA primase [Enterococcus faecalis X98] gi|306510248|gb|EFM79272.1| DNA primase [Enterococcus faecalis TX0855] gi|310630610|gb|EFQ13893.1| DNA primase [Enterococcus faecalis TX0102] gi|315152522|gb|EFT96538.1| DNA primase [Enterococcus faecalis TX0031] gi|315155800|gb|EFT99816.1| DNA primase [Enterococcus faecalis TX0043] gi|315158033|gb|EFU02050.1| DNA primase [Enterococcus faecalis TX0312] Length = 628 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 164/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G +IAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNIIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|300361839|ref|ZP_07058016.1| DNA primase [Lactobacillus gasseri JV-V03] gi|300354458|gb|EFJ70329.1| DNA primase [Lactobacillus gasseri JV-V03] Length = 604 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 148/635 (23%), Positives = 273/635 (42%), Gaps = 45/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF ++ K F Sbjct: 4 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVKKVAELAHLQMPEGYGEAAKPLSPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 AT+F+ H L + +R Y +R + ++ FK+GYAPDS L +L+QK +++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDSDNILLTYLKQKDYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + E+GL ++ + +DRFR+RL+FP+ G + F GR +S +++ KY+NSPET Sbjct: 176 DDLRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + S +IL EGYMDV++ +AG+Q+ V+S+G Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L DP Sbjct: 285 TSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YGK + + +L D L +R + + E+ I + D Sbjct: 343 DEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLAYITAAVQMIAGLNDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-------SQRLMQSSLV 472 Y + + + R ++ H+ S+ Sbjct: 403 AADLYLDKLAHQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENVSESAEPKEAQ 462 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 G S+ + LL I+ + + + KL F Sbjct: 463 AGTDSETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHDEA 520 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + E +L + + + + + + ++ + + Sbjct: 521 EVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----ID 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ + K + + + + + Sbjct: 568 EQLNDLLSQLKEAQRKQDNSLELEIAQKVIALRRK 602 >gi|238854654|ref|ZP_04644984.1| DNA primase [Lactobacillus jensenii 269-3] gi|282932955|ref|ZP_06338352.1| DNA primase [Lactobacillus jensenii 208-1] gi|238832444|gb|EEQ24751.1| DNA primase [Lactobacillus jensenii 269-3] gi|281302990|gb|EFA95195.1| DNA primase [Lactobacillus jensenii 208-1] Length = 595 Score = 351 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ I I ++I QYV ++R DY CPFH EKTPSF ++ K F Sbjct: 4 RIPEDFINEVRNGINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ SF+ SF E+V +A +A + +P + + K + L ++ Sbjct: 59 FKCFGCGKGGNVFSFMQYKESLSFPEAVAEVAKMANLAMP---SSYQSEAKPLSPLKKVH 115 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +FFH L + +R Y ER + +E F++GYAP+S + L LR KG+ + Sbjct: 116 QDACEFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + ++GL S +DRFR+RL+FP+ G ++ F GR +S + KYLNSPET Sbjct: 176 TVLAKSGLFSQN-ESGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++ A ++ + ++L EGYMDV++ +AG++ ++S+G Sbjct: 235 EIFNKSKVLFHLKEAKKAVR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL ++S I++ +DGD+PG A +A + G +V V L G DP Sbjct: 285 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMFETI--GGFQVGVVSLPEGLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + ++ D KR +F+ E+ I + + Sbjct: 343 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAIKLIAPLTNPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ GR + R + Q + V + Sbjct: 403 ERDLYVTKLAKKVGVSEDSLKVSLLREGRRLRVAERRKKQYNFEPEEQSKTQVATLHNTN 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P+L LL ++ + + + KL + Sbjct: 463 PALV--RLLYLFVHSEKVRNYLLGL--HFLFPDENYAKLAESWLDFEETHDNATINSFYD 518 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L + + + + + + +V LA KR R+ ++ Sbjct: 519 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKRLDN-QRKISNLQ 565 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 Q+ + + ++ + ++ Sbjct: 566 MQLQDAQRRQDEDQVLKTLEMIINAKR 592 >gi|184155320|ref|YP_001843660.1| DNA primase [Lactobacillus fermentum IFO 3956] gi|183226664|dbj|BAG27180.1| DNA primase [Lactobacillus fermentum IFO 3956] Length = 631 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I L + I+++I Q + ++ N CPFH++ TPSF N+ K ++ Sbjct: 4 IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121 YCFSCH GD S+L SF+E+V+++A AGV LP + T L RL Sbjct: 59 YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178 E A+ +HH L N + YL +RG+ I F LG+AP L ++ QKG Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235 + + +GL + +DRF +R+I+PI+++ GQ IAF GR L+K + KYLN Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K + L+N A +K + L EG+MDV+S AGV++ + Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+ T+ Q+ ++ + + ++ +C+DGD G A +A+ + + V L Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD +++ G+ F++ + + + + E + Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404 Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + D R Y Q + L R ++ R Q Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPESSPRQPRQAGTRRYQS 464 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S L K L + LL + ++PA ++ + + + + Q L + Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523 Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 ++ L + ++ Q++++V V + Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 LA+ + +Q E + + A + + L L ++ Q +++++ Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628 >gi|118594359|ref|ZP_01551706.1| DNA primase [Methylophilales bacterium HTCC2181] gi|118440137|gb|EAV46764.1| DNA primase [Methylophilales bacterium HTCC2181] Length = 574 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 164/626 (26%), Positives = 290/626 (46%), Gaps = 54/626 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+D+L + ++I + V + N + ACCPFH EK+PSF + SK FY Sbjct: 2 IPESFIQDMLNRTDVVDVIDKRVQLKKAGAN-----FVACCPFHQEKSPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G ++FL G +F+E+V ++A+ G+ +P KK K L ++ Sbjct: 57 HCFGCGAHGSAITFLIEFEGLTFVEAVHQIASSLGLTVPNESRADPKKIKENFGLEEAMK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +AT F+ +L+++ + YL RG+ + F +G+APD +L K + + Sbjct: 117 IATQFYQKALRSS--PKAIEYLKSRGLTGAVAKEFSIGFAPDGWQNLENAF--KQYDDAS 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + +AGL I + YDRFRNR++FPI + +GQVI FGGR ++ ++ KY NSPET LF Sbjct: 173 LEKAGL-IQKNEKGKYYDRFRNRIMFPIINEKGQVIGFGGRVINPDDTPKYYNSPETPLF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY A ++ ++++VEGYMDV++L Q +NVV++LGTA Sbjct: 232 QKSYELYGLIHARKPIR----------EKGYVVVVEGYMDVVALTQHDFRNVVATLGTAT 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Y ++ L + + IV CFDGD G AA++A+ L + R+ F+ L DPDSF Sbjct: 282 TIYHIKKLMRYTQDIVFCFDGDKAGQTAAWRAMMNALSAVTDNVRLKFLFLPDNHDPDSF 341 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR Y K AF++L ++LPL + + +R T ++ +++ L ++ +N + K+ Sbjct: 342 IREYSKEAFDRLAEDALPLSEYIVRRLTLTNDLSSQEKKVRLLNDVEPILNEMTAPKVHL 401 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + I + ++ R + +K ++ ++ ++ K ++ Sbjct: 402 FLRKKIAQLVGLDMEEITHILKNAKATQPSAQRIKLEKKVQMNPIRRFILFIIINPKLAI 461 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRL 541 E L + +N + L + +E + + Sbjct: 462 AEDLRL---------------------FSSNANEHILAKLIIEIALENNGNNAAVMLHLI 500 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + +L++++ Q+ E +AL + +LLS + + Sbjct: 501 SSKVDESVLREMEGQIVKIDGGLNLEEE---------VKALRNSLQKKLLS---STNKTK 548 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQ 627 + ++ K T + L + + Sbjct: 549 LGELQEKSLGSLTDEEKAFLKNIRRK 574 >gi|297180104|gb|ADI16327.1| DNA primase (bacterial type) [uncultured bacterium HF130_01F24] Length = 606 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 176/621 (28%), Positives = 278/621 (44%), Gaps = 40/621 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI +LL I +++ + V ++ N Y ACCPFH EKTPSF N + FY Sbjct: 5 IPQSFIDNLLNRTDIVDVVDKRVPLKKQGNN-----YTACCPFHQEKTPSFSVNQERQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLI 121 YCF C G+ + F+ F +V+ LA AG+ +P + + + K+ Q T L ++ Sbjct: 60 YCFGCGAGGNAIGFVMNFDKSDFPVAVETLAKDAGLEVPREESQRQIKQNRQHTSLYDVL 119 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + F+ L K+ + + YL RG+ + F +G+AP +L + S+ Sbjct: 120 SSTSAFYQIQLRKHPQKEAAVQYLKSRGLTGNVAASFAIGFAPPGWDNLLKEFGPSAESQ 179 Query: 181 EKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 ++ AGL I+ N YDRFRNR+IFPIR SRG+ IAFGGR L Sbjct: 180 NLLLGAGLTIERSKDKPSNKMQNRINEYDYYDRFRNRIIFPIRDSRGRTIAFGGRVL-GE 238 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET +F K LY + +K + IILVEGYMDV++L Q Sbjct: 239 EKPKYLNSPETAVFQKSSELYGLYELKKSGEKFSK----------IILVEGYMDVIALSQ 288 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G++N V++LGTA L ++K P ++ CFDGDD G +AA++A++ L H+ G +V Sbjct: 289 MGIKNSVATLGTATNSRHLGKIFKQVPELIFCFDGDDAGEKAAWRALETALPHMQDGRQV 348 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L GEDPD+++R GK F + + PL D L++ + + T + +A L Sbjct: 349 KFLFLPNGEDPDTYVRTIGKRQFLIEVSSAKPLEDFLFEHLSADLDTTTGEGKARLSNLA 408 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K+ ++ I D + + + + +S + D S + Sbjct: 409 KSHLSKIPDGIYSRLMLEKLAGLVGLPAESIAKLYSKSASSHPNDNIASDGIFSSTSVAG 468 Query: 469 SSLVKGKLSKKP-----SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 L G SK+ + L+ P I ++L + +E +KL L Sbjct: 469 DFLKVGSQSKREDSFYQKPASIKAIELLLQKPEIALSLTKDLNVLHSAEDEGRKLLISLI 528 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + G Q+ + E + Q L+ Sbjct: 529 EMIQKDPKTDIFTMLGYCYGSNLGNQFTQI-----FSDEKITPKEGLQGEFIQIIDNILS 583 Query: 584 LYKRFRLLSRQKEEIEKQIAQ 604 +R L + K E+ ++ + Sbjct: 584 DMRRKLDLVKLKTELRAKVIE 604 >gi|256961964|ref|ZP_05566135.1| DNA primase [Enterococcus faecalis Merz96] gi|293383034|ref|ZP_06628952.1| DNA primase [Enterococcus faecalis R712] gi|293389478|ref|ZP_06633935.1| DNA primase [Enterococcus faecalis S613] gi|312907496|ref|ZP_07766487.1| DNA primase [Enterococcus faecalis DAPTO 512] gi|312910114|ref|ZP_07768961.1| DNA primase [Enterococcus faecalis DAPTO 516] gi|256952460|gb|EEU69092.1| DNA primase [Enterococcus faecalis Merz96] gi|291079699|gb|EFE17063.1| DNA primase [Enterococcus faecalis R712] gi|291081095|gb|EFE18058.1| DNA primase [Enterococcus faecalis S613] gi|310626524|gb|EFQ09807.1| DNA primase [Enterococcus faecalis DAPTO 512] gi|311289387|gb|EFQ67943.1| DNA primase [Enterococcus faecalis DAPTO 516] Length = 628 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDEALFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQAQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|226950365|ref|YP_002805456.1| DNA primase [Clostridium botulinum A2 str. Kyoto] gi|226841581|gb|ACO84247.1| DNA primase [Clostridium botulinum A2 str. Kyoto] Length = 590 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIRSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK A+ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKEAYLKLVKEALPLIEYKIKISKQDLNIGNKRQAIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE + K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ ++T + L +V + ++ Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590 >gi|167622944|ref|YP_001673238.1| DNA primase [Shewanella halifaxensis HAW-EB4] gi|167352966|gb|ABZ75579.1| DNA primase [Shewanella halifaxensis HAW-EB4] Length = 576 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 170/630 (26%), Positives = 296/630 (46%), Gaps = 58/630 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARTDIVDLIDPKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIR 119 FY+CF C G+ + F+ F+++++ LA G+ +P + +++ DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLDFVDAIEELAGQLGLEVPREQGTGKPRDQELSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ FF L+ DK+ YL RG+ +E F +G+APD L RQ Sbjct: 116 LMEEASLFFQSQLRQHTDKQKVLDYLKHRGLSKEVVEHFNIGFAPDGWDGLLSRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++K++ AG++I+ D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 SQDKLLTAGMVIENDSG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + ++ R +++VEGYMDV++L Q V V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHREPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PGN+V F+ L GED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGKEAAWRALETALPLLKPGNQVRFMFLPEGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK FE I +++ L + L++ + ++++ L + I ++D Sbjct: 344 PDTLVRQIGKQEFEAQIDQAMALPEFLFENLIKTY---GNEDKSVLAKNAIKLIEKVQDT 400 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L+ + + + + +K +H+ KG L Sbjct: 401 VLQSLLLEDLAHKLRMNGADELKRKFNFSTKAAEKPNQHKALKGRGTPL----------- 449 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP + ++ ++ L+ + ++ Sbjct: 450 -------RLAIALLVQHPHLGEKLPEQ--------PALKHIQMAGIDLLTLVLDLTRGQV 494 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + ++ L + ++ Q ++ L ++ + L ++ +E Sbjct: 495 ---ITSAQLLEQFRGDNQFSTLKKLTQWDHQVADENLLQKLKETL-VWLNNQYLEQRYQE 550 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + E+ L ++ + + Sbjct: 551 L-----SMKKNLTKEERLQLSKLISVIKNK 575 >gi|253997428|ref|YP_003049492.1| DNA primase [Methylotenera mobilis JLW8] gi|253984107|gb|ACT48965.1| DNA primase [Methylotenera mobilis JLW8] Length = 595 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 166/620 (26%), Positives = 277/620 (44%), Gaps = 54/620 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + I ++I + V + N Y ACCPFH+EK+PSF + +K FY Sbjct: 18 IPESFIQELLNRVDIVDVIDKSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 72 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121 +CF C G + F+ G SF++++ LA + G+ +P +K L + Sbjct: 73 HCFGCGAHGTSVGFIMEYQGLSFVDAIHDLAKMVGMTVPQEVRDSDKPAPKVVVGLQEAL 132 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A +F+ LK + R YL RG+ F++GYAP +L+ Q Sbjct: 133 QQAANFYKAELKKS--PRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVFPQYEN--- 187 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + L+ + YDRFR+R++FPI +GQVI FGGR ++ ++ KY NSPET L Sbjct: 188 EALTVAGLVVENEQGRRYDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNSPETPL 247 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY F A ++ + R ++VEGYMDV++L Q G++ V++LGTA Sbjct: 248 FQKGHELYGLFLARRAIRDAGRA----------LVVEGYMDVVALAQYGIEYAVAALGTA 297 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T Y + L + + IV CFDGD+ G AA++A L L G +++F+ L + DPDS Sbjct: 298 TTPYHITKLTRQADEIVFCFDGDNAGRTAAWRAAMNALPALTDGLKLSFLFLPKEHDPDS 357 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +GK FE I ++PL + + +E+ + ++R + + I + Sbjct: 358 YVREFGKEKFEAEIKSAMPLSQYILQHLSEDNPLQSQEDRVRFLNEAEPIMQQISAPRSA 417 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + + L Q E + N K R S + L Sbjct: 418 MYLRKKVAE----LAQLSADEMQALLKLPNLNKAPMKAKPKLTRTTMSLQKRFGL----- 468 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L+ HP + QE EL R ++ L + + + P + + L Sbjct: 469 --------MLLMHPELAQEDDLELLSER---DDADALLRQVIEICLLHPHSKPAVLLREL 517 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKEEIE 599 + +L +L R++ + D Q+ ++ + + RQ + Sbjct: 518 ESKIDANVLPELQRELTL-----------LDDTLDHAQELAGARQQLQAVHTQRQSASLL 566 Query: 600 KQIAQVTAKGEAEKTAILIS 619 +I++ L+ Sbjct: 567 ARISEKPLSALTADEIALLK 586 >gi|256619026|ref|ZP_05475872.1| DNA primase [Enterococcus faecalis ATCC 4200] gi|257082588|ref|ZP_05576949.1| DNA primase [Enterococcus faecalis E1Sol] gi|307289066|ref|ZP_07569022.1| DNA primase [Enterococcus faecalis TX0109] gi|256598553|gb|EEU17729.1| DNA primase [Enterococcus faecalis ATCC 4200] gi|256990618|gb|EEU77920.1| DNA primase [Enterococcus faecalis E1Sol] gi|306499775|gb|EFM69136.1| DNA primase [Enterococcus faecalis TX0109] gi|315163976|gb|EFU07993.1| DNA primase [Enterococcus faecalis TX1302] Length = 628 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|315150575|gb|EFT94591.1| DNA primase [Enterococcus faecalis TX0012] Length = 628 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 288/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L + + +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERGAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|86608987|ref|YP_477749.1| DNA primase [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557529|gb|ABD02486.1| DNA primase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 646 Score = 351 bits (899), Expect = 3e-94, Method: Composition-based stats. Identities = 158/658 (24%), Positives = 279/658 (42%), Gaps = 56/658 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P DFI+ + + ++ + V ++ N + CPFH++ PSF + SK Sbjct: 1 MSGLPPDFIQLVRQKADLVEVVAEKVVLRKQGKN-----FVGLCPFHNDHKPSFQVSPSK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEK 112 Y CFSC GD L F+ SF E+V+ LA +PLP +P+ E++ Sbjct: 56 QIYKCFSCGAGGDVLRFVMQTEHLSFAEAVRHLARRYHIPLPTRNPEAQPLGSLDERELS 115 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L+ ++ +A DF+ H+L++ YL R + ++ F++G+AP SL E+ Sbjct: 116 HREKLLEILAMAADFYRHALRSQLGSAARQYLHSRHLSEETLQKFQIGFAPPGWQSLYEY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + EAGLL+ + YDRFRNR++ PI +G+VI F GR L + Sbjct: 176 LVNHKRQPVKLLEEAGLLVPRQQGSGHYDRFRNRIMLPIFDVQGRVIGFAGRALGESGQP 235 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + +Y A + + K + +++VEGY DV++L QAGV Sbjct: 236 KYLNSPETELFNKSQVVYGLNFARDAIAK----------ADQVLVVEGYFDVIALHQAGV 285 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRV 348 V+++GTALT +Q++ L + + R++L FD D GL AA +AI+ + G + Sbjct: 286 AYAVAAMGTALTPHQVKTLLRYTQSKRLILNFDADRAGLNAASRAIEAIEEQARRGEIEL 345 Query: 349 NFVLLSRGEDPDSFIRCYGKTAF--------EKLIVESLPLVDMLWKRETENRSFNTPDE 400 + L G+D D F+R Y +A + LI ++ +D ++ R + + Sbjct: 346 RILTLPEGKDADEFLREYKSSAPPTRAVAELQTLIEQAPLWLDWRIEQVLAGRDLSRATD 405 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + L + + + R Y + + L + + + R + R + Sbjct: 406 FQQARQALVQLLAGLG-GQWRSLYLHKVAELLSRGNGRLSRDLEEDLRRAVRQYRWAKPQ 464 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKL 518 PS L E+ LL ++ E Q L ++++ ++L Sbjct: 465 QPSLNKGSKLLQS----------ESHLLQIFLHFGEYRHEIRQTLLERELQFSFRPHREL 514 Query: 519 WSFLFSDFVEQKYFLPEEIHQRL-------CERGFGELLKQLDRQVRDAGLWSATTEANI 571 W + Q +E + E L L + + + Sbjct: 515 WQRILELISAQPELEEQEETLLTALRTLCAQDEQLNERLSHLLWLDENTRVALMRPRMVV 574 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + KR+R ++ ++ + A + + Q+ Sbjct: 575 RAAIANMELEIR-QKRYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQ 631 >gi|326387390|ref|ZP_08208999.1| DNA primase [Novosphingobium nitrogenifigens DSM 19370] gi|326208046|gb|EGD58854.1| DNA primase [Novosphingobium nitrogenifigens DSM 19370] Length = 631 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 200/649 (30%), Positives = 306/649 (47%), Gaps = 29/649 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ ++ +L I +S LIG+ V + ++ ACCPFH+EK+PSF ND KG Sbjct: 1 MSLSPQWLDELRSRISLSGLIGRTVRVQKAGR-----EFKACCPFHNEKSPSFTINDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + +++ G F+E+V+ LA++AG+ +P DP+ +K + L Sbjct: 56 FYHCFGCGAHGDAIRWMTDHQGLPFLEAVKELASLAGMEVPAPDPRAARKAEKAKTLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DFF +L YL RG + IE F GYAPDSR +L+ L G Sbjct: 116 MAGAQDFFRRNLAGDGGGAARSYLATRGFPAAIIETFGFGYAPDSRGALKSALAGFGE-- 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPE 238 ++IEAGLLI YDRFR RL+ PI RG+VIAFGGR L K ++ KYLNSP+ Sbjct: 174 AQLIEAGLLI-AVEGKEPYDRFRGRLMLPIHDVRGRVIAFGGRILSAEKTDAPKYLNSPD 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ LYN A + S R +++VEGYMDV++L AG+ V+ L Sbjct: 233 TPLFDKGRTLYNLHRAAPAARSSGR----------MVVVEGYMDVVALAAAGIAEAVAPL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q+ LW++ P VLCFDGD G RAA +A+ L L PG+ ++ V L G D Sbjct: 283 GTALTEEQIERLWQVVPCPVLCFDGDAAGQRAARRAMTRALPLLKPGHSLSIVTLPGGMD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++ G A E L+ PL++ +W+ E + +TP+ +A L+ L I Sbjct: 343 PDDIVKKQGAAAMEALLSAGTPLIEAVWQAERDAAPLDTPEAKAGLKARLIEQTETIAHP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG-------PSQRLMQSSL 471 +R Y + + DR L R + QK P L Sbjct: 403 DIRALYRRDLLDRFGALAYPSRERSQFTPRQAAPRQAQQGQKRGGGRWQPPEPPLPPEEA 462 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + AA+L L P+ + + LA + + +L +L L + Sbjct: 463 ERLRRYGQSEALLAAVLAGLATRPSEIARHAEALAHLAPSDPDLARLLDALLDLADSPES 522 Query: 532 FLPEEIHQR-LCERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFR 589 E+ Q L R +L++ + ++ A + A + +A+ L F Sbjct: 523 GESEDEDQEGLESRSIAPILRERNVRLPTAEDYPDLPFGAIVGGDASVLAEAVDLLVEFP 582 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + + + ++ + L+ + ++ Q+ A + Sbjct: 583 RVEAALAQANARCEHDLSEESFAEQQRLVQRRLALRARLGQMGRARAAL 631 >gi|260664403|ref|ZP_05865255.1| DNA primase [Lactobacillus jensenii SJ-7A-US] gi|260561468|gb|EEX27440.1| DNA primase [Lactobacillus jensenii SJ-7A-US] Length = 601 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 273/627 (43%), Gaps = 40/627 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ I I ++I QYV ++R DY CPFH EKTPSF ++ K F Sbjct: 10 RIPEDFINEVRNGINIVDVISQYVSLEKRGK-----DYVGLCPFHQEKTPSFTVSEDKQF 64 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ SF+ SF E+V +A +A + +P + + K + L ++ Sbjct: 65 FKCFGCGKGGNVFSFMQYKESLSFPEAVAEVAKMANLAMP---SSYQSEAKPLSPLKKVH 121 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +FFH L + +R Y ER + +E F++GYAP+S + L LR KG+ + Sbjct: 122 QDACEFFHQVLLTSKAGERALNYAKERELSEDLLEHFQIGYAPNSDHLLLTFLRGKGYDD 181 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + ++GL S +DRFR+RL+FP+ G ++ F GR +S + KYLNSPET Sbjct: 182 TVLAKSGLFSQN-ESGQLFDRFRDRLMFPLADEVGYIVGFSGRRISNNKELAKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++ A ++ + ++L EGYMDV++ +AG++ ++S+G Sbjct: 241 EIFNKSKVLFHLKEAKKAVR----------TEKHLVLYEGYMDVIAAYKAGIKTGIASMG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL ++S I++ +DGD+PG A +A + G +V V L G DP Sbjct: 291 TSLTDDQVYLLKRISRNIIINYDGDEPGQHAIERASHMFETI--GGFQVGVVSLPEGLDP 348 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + ++ D KR +F+ E+ I + + Sbjct: 349 DEYVKKYGPERYQDEVKGAITPTDFFLKRLELKYNFSNDREKLAYLDEAIKLIAPLTNPV 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ GR + R + Q + V + Sbjct: 409 ERDLYVTKLAKKVGVSEDSLKVSLLREGRRLRVAERRKKQYNFEPEEQSKTQVATLHNTN 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P+L LL ++ + + + KL + Sbjct: 469 PALV--RLLYLFVHSEKVRNYLLGL--HFLFPDENYAKLAESWLDFEETHDNATINSFYD 524 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L + + + + + + +V LA KR R+ ++ Sbjct: 525 FIPD--------DLKGIIDNMEMMTMPEDFSKEEVD----GLLASLKRLDN-QRKISNLQ 571 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 Q+ + + ++ + ++ Sbjct: 572 MQLQDAQRRQDEDQVLKTLEMIINAKR 598 >gi|240170987|ref|ZP_04749646.1| DNA primase [Mycobacterium kansasii ATCC 12478] Length = 646 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 136/652 (20%), Positives = 244/652 (37%), Gaps = 41/652 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 9 RISDRDIAAIRDGARIEDVVGDYVQLRRAGA----DSLRGLCPFHNEKSPSFHVRPNHGH 64 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ L+ Sbjct: 65 FHCFGCGEGGDVYAFIQKIEHVSFVEAVELLADRIGYTISYTGAATSVQRDRGSRSRLLA 124 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ +L++ +YL +R D+ A F G+AP SL +HL++KGF Sbjct: 125 ANAAAAEFYAVALESDEAAPARHYLTQRNFDAQAARRFGCGFAPSGWDSLTKHLQRKGFE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+P Sbjct: 185 FKELEAAGLSRQ--GRHGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYVNTP 242 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 243 ETLLYKKSSVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 292 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GTA + L +L +L D A+ + + + Sbjct: 293 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKALDGEQNLAGQSFVAVA 352 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A L+ PL + + N+ + R + Sbjct: 353 PDGMDPCDLRLASGDAALRDLVARRTPLFEFAIRSALAETDLNSAEGRVAALRRCVPMVG 412 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEH-----------SGYGRYWKKNARHRDQKGP 462 IKD LR Y++ + + + + G G K R Q+ P Sbjct: 413 QIKDPMLRDEYARQLAGWVGWDDVAQVVDRVRSQAKTPAKVPGRGHPGSKAPRRATQQPP 472 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + + L + + +PA+ + L + + + + + Sbjct: 473 DAPSAEPAAARPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYCAVRAAI 532 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + + + L L ++ + A D Y + Sbjct: 533 EAAGGTSAGVTGAQWMDMVARQTTSPLTTGLINELAVEAI------AVDDDKLPRYIGGV 586 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + RQ E++ ++ +++ ++ L L + + Q Sbjct: 587 LARLQEVWMGRQIAEVKSKLQRMSPIEHGDEYHALFGDLVAMEAYRRSLLEQ 638 >gi|29376086|ref|NP_815240.1| DNA primase [Enterococcus faecalis V583] gi|227553322|ref|ZP_03983371.1| DNA primase [Enterococcus faecalis HH22] gi|256762452|ref|ZP_05503032.1| DNA primase [Enterococcus faecalis T3] gi|256958943|ref|ZP_05563114.1| DNA primase [Enterococcus faecalis DS5] gi|257078974|ref|ZP_05573335.1| DNA primase [Enterococcus faecalis JH1] gi|257419259|ref|ZP_05596253.1| DNA primase [Enterococcus faecalis T11] gi|294779114|ref|ZP_06744525.1| DNA primase [Enterococcus faecalis PC1.1] gi|307271056|ref|ZP_07552339.1| DNA primase [Enterococcus faecalis TX4248] gi|30179818|sp|P52308|PRIM_ENTFA RecName: Full=DNA primase gi|29343548|gb|AAO81310.1| DNA primase [Enterococcus faecalis V583] gi|227177551|gb|EEI58523.1| DNA primase [Enterococcus faecalis HH22] gi|256683703|gb|EEU23398.1| DNA primase [Enterococcus faecalis T3] gi|256949439|gb|EEU66071.1| DNA primase [Enterococcus faecalis DS5] gi|256987004|gb|EEU74306.1| DNA primase [Enterococcus faecalis JH1] gi|257161087|gb|EEU91047.1| DNA primase [Enterococcus faecalis T11] gi|294453839|gb|EFG22230.1| DNA primase [Enterococcus faecalis PC1.1] gi|306512554|gb|EFM81203.1| DNA primase [Enterococcus faecalis TX4248] gi|315033930|gb|EFT45862.1| DNA primase [Enterococcus faecalis TX0017] gi|315036940|gb|EFT48872.1| DNA primase [Enterococcus faecalis TX0027] gi|315169075|gb|EFU13092.1| DNA primase [Enterococcus faecalis TX1341] gi|315575905|gb|EFU88096.1| DNA primase [Enterococcus faecalis TX0309B] gi|315580558|gb|EFU92749.1| DNA primase [Enterococcus faecalis TX0309A] gi|323480686|gb|ADX80125.1| DNA primase [Enterococcus faecalis 62] Length = 628 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|257086782|ref|ZP_05581143.1| DNA primase [Enterococcus faecalis D6] gi|256994812|gb|EEU82114.1| DNA primase [Enterococcus faecalis D6] gi|315027305|gb|EFT39237.1| DNA primase [Enterococcus faecalis TX2137] Length = 624 Score = 350 bits (898), Expect = 3e-94, Method: Composition-based stats. Identities = 165/648 (25%), Positives = 289/648 (44%), Gaps = 49/648 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQ 624 >gi|326204488|ref|ZP_08194345.1| DNA primase [Clostridium papyrosolvens DSM 2782] gi|325985281|gb|EGD46120.1| DNA primase [Clostridium papyrosolvens DSM 2782] Length = 605 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 176/632 (27%), Positives = 299/632 (47%), Gaps = 40/632 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P D I+++ + I +I +YV +++ N Y+ CPFH+EKT SF K + Sbjct: 5 FPDDLIEEIRVSNDIVGVISEYVKLEKKGKN-----YFGKCPFHNEKTASFSVEPVKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C G+ L F+ ++ F E+++ LA A + +P + + ++K ++ +L+ + Sbjct: 60 HCFGCGKGGNVLHFIMSIENLDFPEALRFLADRAKIQIPDITEGVRNDEKAGLKKELLEI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF +L N ++ + YL R I I F +GYA D L +HL+ KGFS+ Sbjct: 120 NLEAARFFRDNLNNEKNNIPNSYLMNRKIQKQTIAKFGIGYAEDRYDILYKHLKAKGFSD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I ++GL+I + S YDRFR R++FPI RG VIAFGGR L + KY+NSPET Sbjct: 180 SSIKQSGLVIYKEESGKIYDRFRGRIMFPIFDIRGNVIAFGGRVLDSSQP-KYMNSPETE 238 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KGK+LY A + K +IL EGYMDV+SL Q G+ N V+ LGT Sbjct: 239 VYQKGKHLYALNFAKSACSK------------QLILSEGYMDVISLHQCGIINSVAPLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q RLL K + IVL FD D G AA++++DL G V + + G+DPD Sbjct: 287 ALTENQGRLLKKYTEEIVLSFDSDSAGQAAAFRSLDL---LNEIGCNVRVLTIPSGKDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ +G T F++L+ S L+D + +T + + ++ I + Sbjct: 344 EFIKAHGVTEFKQLVDRSKGLLDFKLGSLKNDIDTSTNEGKVRFLDKAVLILDKIDNNVE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQRLMQSSLVKGKLSK 478 + Y + + D L Q ++E + + N + + + S+ ++ S V + Sbjct: 404 KELYVKKLSDELGVSTQSILSEIAKQQKEADSNFKQQVPRSNNFSRNPIRKSTVVKNQEE 463 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL T+ + ++ ++++E++ + F + L EI Sbjct: 464 WLVRLQLMLLATICIDNNVYFSIKDVISWDSFESDEVKNAFDFAVERIESKAGILTGEIL 523 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +L G E + + +++ D ++ + F L R+ + I Sbjct: 524 NKLSP-GMAESFANIVQ-----------SQSIFEDNKKAALDIIRKIDLFSLEERKNQII 571 Query: 599 EKQIAQVTAKGEAEKTAILISIL---HEVHIQ 627 E + + +G+ E +S + + + Sbjct: 572 ELKKSSDLTEGDVELLNRELSSIVSNIAIKKK 603 >gi|149184446|ref|ZP_01862764.1| DNA primase [Erythrobacter sp. SD-21] gi|148831766|gb|EDL50199.1| DNA primase [Erythrobacter sp. SD-21] Length = 615 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 184/625 (29%), Positives = 289/625 (46%), Gaps = 30/625 (4%) Query: 14 HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73 +S +IG+ + ++ ACCPFH+EKTPSF+ ND KGFY+CF C GD Sbjct: 2 RTTLSAVIGRTTRLTKAGR-----EFKACCPFHNEKTPSFYVNDEKGFYHCFGCEAHGDA 56 Query: 74 LSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLK 133 + +L+ G F+++V+ LAA AG+ +P DP+ ++ + + L + A ++F L Sbjct: 57 IRWLTDQRGMPFMDAVKELAAEAGMEVPAPDPRAAERAEKRASLHDVTAAAQEWFVRELA 116 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 + + YL RG + F G+AP+ R +L+ L Q F E +IEAG+ I+ + Sbjct: 117 SPQGAEARAYLKRRGFSDSVVREFGFGFAPEDRQALKSALSQ--FDERMLIEAGMRIEVE 174 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFF 252 + YDRFR RL+ PI+ +RG+VIAFGGR L KYLNSP+T LF KG+ LYN Sbjct: 175 DKD-PYDRFRGRLMLPIQDTRGRVIAFGGRILDSDAYGPKYLNSPDTPLFDKGRTLYNLH 233 Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312 A ++S R I++VEGYMD ++L AG+ V+ LGTALTE Q+ LLW+ Sbjct: 234 RAAPATRQSGR----------IVVVEGYMDAIALANAGIAEAVAPLGTALTENQIELLWR 283 Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372 R +LCFDGD+ G RAA +AI VL L PG+ ++ V + G+DPD ++ G A E Sbjct: 284 QVERPILCFDGDNAGQRAAMRAIGRVLPKLRPGHSLSIVRMPAGKDPDDLLKESGVGAME 343 Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 +L+ L+D LW E + + +P+E+A L+ L I+ +R Y + + DR Sbjct: 344 ELLSSPASLLDTLWAFERDAQPLTSPEEKAGLKARLLAHTETIQHDDIRALYRKELLDRF 403 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 R K ++ L + A++ L+ Sbjct: 404 SAFAFPPRAPREFKPRGEWKKGGFNAHPPRLSPETEARLKRAMAGGSRDALAVAVIHGLL 463 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 P + L+ + + L + I L K Sbjct: 464 RFPDTILSHEAALSRFAASDRNVGPAIDSLIAAAETLDSPAESPI----------SLPKG 513 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 L + + VD R+ +A++L L + + +G Sbjct: 514 LPAPPANTHFAFLDKGTDPVDAREDLAEAVSLLVERPALEAALAAATARF-ETDPEGAFA 572 Query: 613 KTAILISILHEVHIQIHQIESQEAM 637 + L+ E ++ ++ S++A Sbjct: 573 EQQRLLKRKLEFEARLGKMASRKAA 597 >gi|257085221|ref|ZP_05579582.1| DNA primase [Enterococcus faecalis Fly1] gi|256993251|gb|EEU80553.1| DNA primase [Enterococcus faecalis Fly1] Length = 628 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 290/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + + F + L + +L ++ + +E + Sbjct: 525 FLLESYAILHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|187778481|ref|ZP_02994954.1| hypothetical protein CLOSPO_02075 [Clostridium sporogenes ATCC 15579] gi|187772106|gb|EDU35908.1| hypothetical protein CLOSPO_02075 [Clostridium sporogenes ATCC 15579] Length = 590 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 156/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + + R+ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKEN--RNNPKDKIYRINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKVIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKGKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDADTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I + D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISRQDLNIRDKRQAIQYIDRYIKIIEGL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------EKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNNINEQDIIEETHKTIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + AKG ++T + L +V + ++ Sbjct: 561 KEYEAKGNLDETIKMSQELIKVKKTLGAMK 590 >gi|145220184|ref|YP_001130893.1| DNA primase [Prosthecochloris vibrioformis DSM 265] gi|145206348|gb|ABP37391.1| DNA primase [Chlorobium phaeovibrioides DSM 265] Length = 633 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 158/640 (24%), Positives = 276/640 (43%), Gaps = 38/640 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I ++ I ++I Y+ N + A PF EKTPSF + K Y Sbjct: 2 IPDATIDEVRQSADIVDIISDYLTLQPSGRN-----FKALSPFTREKTPSFIVSTDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ SF+ + F E+V+ +A AG+ + + KK + + R + Sbjct: 57 KCFSTGKGGNVFSFVMEMEKIPFPEAVELVAKRAGLDMKRLFGDSRKKNEEEDSKTRTLR 116 Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FH SL + Y RG+ + I F LGYAP +L + +++G + Sbjct: 117 WAARLFHSSLNADKGNEGYAYLAARRGLTAATINSFGLGYAPPGWDTLLKAAKKEGIAHN 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETI 240 + GL+ + + YD FRNR++FPI S GQV+ FGGRTL + ++ KYLNSPE+ Sbjct: 177 HLQFLGLITENRQKNSWYDTFRNRVMFPIFSIGGQVVGFGGRTLETRDDTPKYLNSPESP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY A ++ S ILVEGYMDV++L QAG+QN V+S GT Sbjct: 237 LFEKSKLLYGLHAAKQEIR----------QSETAILVEGYMDVIALHQAGLQNAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT +Q ++L + + R++ +D D G ++ +++ L +LL G+DPD Sbjct: 287 SLTRHQAKILKRYTKRVLFVYDADPAGRKSMMSGVEI---LLAENIAPVILLLPPGDDPD 343 Query: 361 SFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SF++ G+ F +L + L +VD TE +F +++A+ + + I + D Sbjct: 344 SFVQREGREKFLELADTAGLGVVDFQILFHTEAGNFGNHEQKADAIRSIVHTILLVPDPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + ++ Q + + ++++R ++ P + + Sbjct: 404 RRELYLGELSEKTGISLQALHELRNIEQKTTQRDSRPEREEKPDPAAVIPP-------AE 456 Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVE-----QK 530 S+ E L L++ A + A + + +++++ L + + Sbjct: 457 VSILEKTFLKALLDSAAYGNTVLEFAASHETMLVLQSPAAREIFAHLVARYHTLSEDPDA 516 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 L L L + + W + + + R+ L ++ + Sbjct: 517 RIDVASAISLLESTDARNLAIGLLIEQPVSNRWLEKGDQHEENARRCLAMFLDAFRNL-I 575 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L+ E E+ + + E E+ L + +I + Sbjct: 576 LAPLLLEKEQVTESIRTETETEREIELSKAKIALDRKIRK 615 >gi|257416056|ref|ZP_05593050.1| DNA primase [Enterococcus faecalis AR01/DG] gi|257157884|gb|EEU87844.1| DNA primase [Enterococcus faecalis ARO1/DG] Length = 628 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 289/649 (44%), Gaps = 49/649 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQKRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDKARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVKATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L S + F + L + +L ++ + +E + Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA--------YQNLSEESSEREVADLL 576 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +AL + ++K + ++ + EAE T +I + ++ Q Sbjct: 577 HVIALSSIAEAIEQKKIQQQEAKRVGNQQLEAELTMEIIQLARQLKAQR 625 >gi|227514581|ref|ZP_03944630.1| DNA primase [Lactobacillus fermentum ATCC 14931] gi|227086992|gb|EEI22304.1| DNA primase [Lactobacillus fermentum ATCC 14931] Length = 631 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 156/656 (23%), Positives = 275/656 (41%), Gaps = 55/656 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I L + I+++I Q + ++ N CPFH++ TPSF N+ K ++ Sbjct: 4 IPRETIDQLRNQVDIADVISQDIQLKKQGKNL-----MGHCPFHEDATPSFSVNEEKQYF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLI 121 YCFSCH GD S+L SF+E+V+++A AGV LP + T L RL Sbjct: 59 YCFSCHRSGDVFSYLEQAHDLSFMEAVEQVATTAGVDLPRESNGPSGESASPNTPLYRLH 118 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAP--DSRYSLREHLRQKGF 178 E A+ +HH L N + YL +RG+ I F LG+AP L ++ QKG Sbjct: 119 EEASRLYHHVLVNTVAGQPALNYLTKRGMSRELIGQFNLGFAPARGEEDLLVKYFTQKGI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235 + + +GL + +DRF +R+I+PI+++ GQ IAF GR L+K + KYLN Sbjct: 179 DYQLMRASGLFTEDQTG-QLHDRFFDRVIYPIKNANGQPIAFSGRLLTKKATENAPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K + L+N A +K + L EG+MDV+S AGV++ + Sbjct: 238 SPETPIFNKRRTLFNLDQAKKAARK----------EGHLTLFEGFMDVISAFGAGVRSGI 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+ T+ Q+ ++ + + ++ +C+DGD G A +A+ + + V L Sbjct: 288 ASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM---LAASRLTLRVVQLPA 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVD-MLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD +++ G+ F++ + + + + E + Sbjct: 345 GMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQSELLHYVEAALREVAK 404 Query: 415 IKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + D R Y Q + L R ++ R Q Sbjct: 405 VTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPENSPRQPRQAGTRRYQS 464 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S L K L + LL + ++PA ++ + + + + Q L + Sbjct: 465 TPPTTTTAPSTQAPPLLGKVELAQQRLLREIFHNPA-VRSHVGAIENFHFVDRPYQLLDA 523 Query: 521 FLFSDFVE--QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 ++ L + ++ Q++++V V + Sbjct: 524 AAKEQLQRTGADEVDVAQLMGELTDAKLRTIVGQIEQRVVPQA-----------AVDETV 572 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 LA+ + +Q E + + A + + L L ++ Q +++++ Sbjct: 573 DDCLAVLVDVAPIEQQIREKTAALQEAAALNDQQLITKLTIELIDLRRQEQKMKTE 628 >gi|294787810|ref|ZP_06753054.1| DNA primase [Simonsiella muelleri ATCC 29453] gi|294484103|gb|EFG31786.1| DNA primase [Simonsiella muelleri ATCC 29453] Length = 586 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 191/636 (30%), Positives = 289/636 (45%), Gaps = 64/636 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+DFI DL+ I +LI QYV + N Y ACCPFH EK+PSF + SK FY Sbjct: 2 IPQDFIDDLIARTDIVDLIDQYVPLKKSGAN-----YMACCPFHKEKSPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-------KKEKIQT 115 +CFSC G ++F+ G F+E+VQ LA G+ +P V E K++ Q Sbjct: 57 HCFSCGEHGSAIAFVMKYQGLGFVEAVQLLADRVGMVVPNVRGNNEDSAAHRAAKKQQQQ 116 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L ++ A +F+H L + + Y ++RG+ S I + +GYAPD L + + Sbjct: 117 TLENTVQAACEFYHQQL--PLNSQAIDYTNKRGLTSDIITHYGIGYAPDGWQPLAQIFQP 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 L DN YDRFR+RL+FPIR+ GQVI FGGR L KYLN Sbjct: 175 YPSVSLVESGMVL----DNEGKHYDRFRHRLMFPIRNVSGQVIGFGGRVL-DDSKPKYLN 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGKNLY + A ++ + R I++VEGYMDV++L Q GV V Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDAGR----------ILVVEGYMDVVALAQFGVGYAV 279 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T +++L++ + + CFDGD G +AA++A++ L L +NF+ L Sbjct: 280 AALGTATTAEHIKILFRQTDSVYFCFDGDGAGRKAAWRALENALPQLKDDKSLNFLFLPE 339 Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R +G+ FE+ L+ ES PL W TEN + + +AEL +N Sbjct: 340 NHDPDSFVRAFGRKRFEEALLHESKPLSVYFWDALTENVDISHQEGKAELVKSAAPLLNQ 399 Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + + L Y Q + + A+ S R ++ + Sbjct: 400 MTQAPALAYLLKQELSTKTGIDPSNLAYLMGQAAPRRHVEAKSYQLPPESFRQPETLTLV 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + L+ +P Q D + +L L L + ++ L Sbjct: 460 QKQ-----------IRALLLNPQWAQYVV--FPDYLPLSGDLNALL-ALAKFYQNHQHNL 505 Query: 534 ---PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + + +L + R + D W ++A D G + Sbjct: 506 YMGTAQALEFFRNTPYANVLAFVFRHITD---WDDNSDAAQQDFIDGIIK---------- 552 Query: 591 LSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVH 625 LS+Q + +QI Q+ KG + L+ L + Sbjct: 553 LSQQLKN--EQIEQLKQKGNLNAQEMKLLMQLITMR 586 >gi|319947857|ref|ZP_08022044.1| DNA primase [Dietzia cinnamea P4] gi|319438463|gb|EFV93396.1| DNA primase [Dietzia cinnamea P4] Length = 675 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 138/687 (20%), Positives = 246/687 (35%), Gaps = 78/687 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + I ++G+YV PF DEKTPSFH G+ Sbjct: 4 RIPEQDIAAIRERTRIEEIVGEYVALKPAGA----DSLKGLSPFKDEKTPSFHVRPQHGY 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CFS GD +FL + F+E+V++LA G + + ++ L + Sbjct: 60 FHCFSTGEGGDVFAFLMKMEHIGFVEAVEQLADRIGYRISYEGGGQVVQRDRGTRSRLAQ 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A F+ L ++ + +L +RG D + F GYAP ++ +HL ++GF Sbjct: 120 ANAAAQKFYAERLAQDPEAETARTFLTDRGFDMAQAQHFGCGYAPAGWDTMSKHLMRQGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +++ AGL + T DRF RL++PIR+ G+VI FG R L + ++ KY+N+P Sbjct: 180 EPKELEAAGL-SKTSSRGTLIDRFHRRLLWPIRNLAGEVIGFGARKLFEDDTLGKYMNTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K + L+ A + R ++VEGY DV+++ AGV V++ Sbjct: 239 ETMLYKKSQVLFGLDLAKREIASQRRA----------VVVEGYTDVMAMHAAGVTTAVAA 288 Query: 298 LGTALTEYQLRLLW-------KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA E L L I+ FDGD+ G +AA +A R Sbjct: 289 CGTAFGEDHLSTLRRLMLDDNYFRGEIIYTFDGDEAGKKAALRAFSGDQQFSG---RTFV 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP + G A L+ +P+ + + E+ + + R E Sbjct: 346 AVAPPGLDPCDLRQTKGDAAVRDLVSARVPMFEFAIRSMLEDYDLDHAEGRVEALRRTVP 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---------- 460 + I+D LR Y++ + + + K AR Sbjct: 406 VVADIRDSSLRDEYARQLAGWVGWDDPATVVRRVREESRKKGRARSAGAGPGPRRRGPGG 465 Query: 461 ---------------------------------GPSQRLMQSSLVKGKLSKKPSLREAAL 487 P + + + Sbjct: 466 PGGGARPGWDAAERAGGGRGRGGYDDDEVGGGDAPRTPEVPKGVPIPAPGDPVLWPQREA 525 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + + +P + + L D Y + + L + + Sbjct: 526 VKAALQYPGLAGPLFDSLPDECYTHPAYAAIAEALSRAGGCSAGKSGVNWVSEVSQGLED 585 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L++L + L + + Y + + +S Q +++ ++ +++ Sbjct: 586 EGLRRLVGVLAVETLRVS------EEALPRYISGVLARLQEVWVSGQIADLKSKVQRMSP 639 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634 + E + L L + + Q Sbjct: 640 AEDPEGYSALFGDLVALEEYRRGLLEQ 666 >gi|311742940|ref|ZP_07716748.1| DNA primase [Aeromicrobium marinum DSM 15272] gi|311313620|gb|EFQ83529.1| DNA primase [Aeromicrobium marinum DSM 15272] Length = 634 Score = 350 bits (898), Expect = 4e-94, Method: Composition-based stats. Identities = 147/658 (22%), Positives = 259/658 (39%), Gaps = 51/658 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I ++ QYV NA G CPFHDEKTPSF+ ++GFY Sbjct: 4 IKDEDIQLVRERARIDEVVEQYVTL----RNAGGGARKGLCPFHDEKTPSFNVRPAQGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDLI 118 +CF C GD + FL + G F E+V+RLA G+ + + + + + L+ Sbjct: 60 HCFGCGAGGDSIKFLMEIEGLPFAEAVERLAGRYGIQVRYEEDGQRSGPRRDPRQRQRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +A +F+ +L + + + + +RG S E F +G+AP S +L HL +G Sbjct: 120 EAHRMAGEFYAAALTTSAEAQPGRQLVTDRGFTSAHAETFGMGWAPRSGTALTAHLTGRG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 F+EE+++ GL +D F+ RL++PIR G++I FG R + + + + KY+N Sbjct: 180 FTEEELLVGGLARRSSRGM--FDVFQGRLLWPIREMTGEIIGFGARRMFEDDFMSGKYVN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET ++ K + LY A + + SS ++VEGY DV++ AGV + Sbjct: 238 TSETPIYKKSQVLYGIDLARRQI----------SGSSQAVVVEGYTDVMACHVAGVTTAI 287 Query: 296 SSLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 ++ GTA E R+L ++ ++ FDGD+ G RAA KA + + Sbjct: 288 ATCGTAFGEGHTRILRRIMLDHDAFRGEVIFTFDGDEAGQRAAVKAFEGDQEFAG---QT 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + RG DP G A +LI +PL + E + D+R + Sbjct: 345 YVAIEPRGMDPCDLRMADGDPAVRELIASRVPLYRFVLDSILERYDLDRGDQRVDAVREA 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPS 463 + I+D + + I R+ + TEH + A + P Sbjct: 405 VGLVVAIRDHAKVEAFLREIAGRVGVEVDQVRTEHRRSAASGARPAARPAPRRSSVDAPD 464 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + E L + +P ++ +L + + + Sbjct: 465 DTPVPAVPAGPPFGAPEFTDEREALKAIAQYPHLVGSVADDLGENDFTHPV--------- 515 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQAL 582 E ++ + LD +R +A Sbjct: 516 -ARRLWAALAAEPWPTAEDASWIPKVAESLDEDLRPILAVAAVEPLRARETSTAAMVAVS 574 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + L RQ +++ ++ + EAE + L + Q + + ++G Sbjct: 575 VFRLQALTLGRQVADLKSKLQRTNPVDEAESYNRMFGELIALEQQHRVLRDR--AVDG 630 >gi|224476670|ref|YP_002634276.1| putative DNA primase DnaG [Staphylococcus carnosus subsp. carnosus TM300] gi|222421277|emb|CAL28091.1| putative DNA primase DnaG [Staphylococcus carnosus subsp. carnosus TM300] Length = 592 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 273/632 (43%), Gaps = 42/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +++ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKDKTDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 +CF C G+ F + G SF+E+V+ L + + V + +I+ Sbjct: 56 ICHCFGCKKGGNVFQFTQEIRGVSFVEAVKELGERVNIKVDVGESGAQNQIASDDLMMIK 115 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+ D++H+ L K + YL RG + K+GYAPDS + + L++KG+ Sbjct: 116 MHELMEDYYHYILMKTVEGEEALNYLKSRGFTEELLNERKIGYAPDSSHFCHDFLQKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E EAGLL + + + YDRFR+R++FP+ +++G+ + + GRT K + KYLNSPE Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRTVGYSGRT-YKNQEPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LYN A +++ + +IL+EG+MDV+ QAGV+ VV+S+ Sbjct: 235 TPIFQKRKLLYNIDRARRTIRQK----------NELILLEGFMDVIKADQAGVKQVVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT +++ + KL+ + L FDGD G A K L G V V + D Sbjct: 285 GTQISQEHTSFIRKLTSNVTLLFDGDFAGQEATLKTGQ---SLLQEGMNVFVVQMPSKMD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I YG+ AF+ + + ++ + + + + I+ ++ Sbjct: 342 PDEYITKYGQEAFKNYLDHERKAFVLYKVNLHKDEIEHNDMAYEKYLKEITDDISLMQSG 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ Q + + + F I E + + +N + + K K Sbjct: 402 ILQKKVLQDVSELFKVSFDSLINEVAMHSPQTPQNYSSQGTNFST---------KPKQYT 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E LL + + + E +EL + N++ Q +++ L + E ++ Sbjct: 453 KKEDAERKLLKHFMFNKDVFLEFNEELEAEDFTNSQFQSIFNILHDYYAENDHYDLSTAL 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + G E L L+ + + Q Y + + + Sbjct: 513 LYSNQEGDREALISLENLLLNRN--------PYEHEVQDYLNIITENRNDETPE----SL 560 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +++ + G+ E + + ++ + Sbjct: 561 NEKLREAARIGDLELQKYYLEKIILINKNRMK 592 >gi|107026825|ref|YP_624336.1| DNA primase [Burkholderia cenocepacia AU 1054] gi|105896199|gb|ABF79363.1| DNA primase [Burkholderia cenocepacia AU 1054] Length = 800 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 177 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 231 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 232 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 291 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L + A D++ L+ YL RG+ F LGYAPD Sbjct: 292 VSKSVATALSDAMTAACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQN 349 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + R + E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 350 LEAAFPDYRDESLVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 409 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++ Sbjct: 410 GSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVA 458 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 459 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAGDN 518 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 519 RTIRFLFLPTEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 578 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRL F++ R + Sbjct: 579 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAALSDVDTRIATPPRQ---------- 628 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L TL+ HP I + E + +L++ + Sbjct: 629 -----APARSERRRVTDSEKRALRTLVMHPRIASQLDDEQIATLRALPRIGELFAEVVDH 683 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD L + E R+ Sbjct: 684 ARALGDGAEFRLLSDVLRTSSNGATYEEIFREILDYDENVRDLLLQNPEDETVPERQREQ 743 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 744 ERIAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELAELTELNQQRTDMKRRL 798 >gi|161521350|ref|YP_001584777.1| DNA primase [Burkholderia multivorans ATCC 17616] gi|160345400|gb|ABX18485.1| DNA primase [Burkholderia multivorans ATCC 17616] Length = 636 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 174/654 (26%), Positives = 276/654 (42%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 16 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 71 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGAGGDYPAPVSK 130 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 + T L ++ A D++ L+ YL RG+ F LGYAPD + Sbjct: 131 SVATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 188 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 189 AFPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 248 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 249 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 297 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 298 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 357 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + ++PL L ++ + P+ RA+ Sbjct: 358 RFLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 417 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR I DRL F++ R Sbjct: 418 KPLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAP 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ + E L TL+ HP I E + +L++ + Sbjct: 463 RQAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARA 522 Query: 529 QKYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 + + + E+ +++ D VRD L + EA R+ + Sbjct: 523 LGDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERI 582 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 583 AGEELQAAVLKMRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 634 >gi|319897951|ref|YP_004136148.1| DNA primase [Haemophilus influenzae F3031] gi|317433457|emb|CBY81840.1| DNA primase [Haemophilus influenzae F3031] Length = 593 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 173/634 (27%), Positives = 290/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRANHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+ F+ + L + + YL +RG+ + IE F++G+ P++ ++ Sbjct: 119 LYELMLEIATFYQNQL--PLNTQAQEYLQQRGLSAEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+++ + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLIFRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EDPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNILAQKLGIFDQTQLENLIPKQLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLLQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|148242418|ref|YP_001227575.1| DNA primase [Synechococcus sp. RCC307] gi|147850728|emb|CAK28222.1| DNA primase [Synechococcus sp. RCC307] Length = 673 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 172/677 (25%), Positives = 300/677 (44%), Gaps = 67/677 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+K+PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVMLKKKGR-----EFVGLCPFHDDKSPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ L FL L SF + V LA +P+ +D +++ + + L Sbjct: 60 YYCFSCGAGGNSLKFLMELKRQSFSDVVMELARRYSLPVETLDANQQERLRQQLSRRDQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R++ +A+ +F L+ YL + RG+ + IE F+LGYAP++ L HL+Q Sbjct: 120 HRVLSLASGWFRSRLQAPEGAAALEYLRKQRGLSAGTIESFELGYAPEAWDGLLRHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + AGL++ YDRFR+RL+ PI +G++I FGGR+L E KYLN Sbjct: 180 EGIDPSLMEAAGLVVPRKGGNGFYDRFRHRLMVPIHDRQGRIIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+LY F A + +++ + ++VEGY DV++L AGV++ V Sbjct: 239 SPETEVFDKGKHLYGFDKAADPIRR----------ADCALVVEGYFDVIALHAAGVRHAV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 ++LGTA++ Q+ L + S RI+L FD D G+RAA + I ++ L + + Sbjct: 289 AALGTAMSAQQVTQLCRCSESRRIILNFDADGAGVRAAQRTIGEVEQQALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ + + + L + +D ++ + D+ L + Sbjct: 349 LPAGKDPDEFLKQHSQADYLALQDNAPLWLDWQIEQVLSGKDLGRADQFQLAVQGLVELL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR +Y Q + +RL + + R K R + ++ +SL Sbjct: 409 GKLPQSALRSHYLQRVAERLSGGQARMALQLEEDLRQQVKGQRWHGRSSRHEQPGDASLR 468 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529 EA LL ++ P++ QEL + +KLW+ L + + Sbjct: 469 --------ERAEAQLLRLYLHVPSLRATIRQELRQRELEDFGLPHHRKLWAHLSALEEDN 520 Query: 530 ----------KYFLPEEIHQRLCER---------GFGELLKQLDRQVRDAGLWSATTEAN 570 + P + L LL++L + L Sbjct: 521 LGVGLLENISRGSEPGDQLADLELPRLLSDLLLIEDSPLLQRLTALLEPGELQQLGLVNP 580 Query: 571 IVDVR---QGYQQALALYKRFRLLS----RQKEEIEKQIA----QVTAKGEAE-KTAILI 618 +R ++ L + LL ++ + +E+ IA +G+AE + L Sbjct: 581 SDQLRGTTASLERHRVLRRCRHLLEAWGSQRLQSLEQCIAMLLESKEDEGDAETRIEALF 640 Query: 619 SILHEVHIQIHQIESQE 635 L+ ++ ++ E Sbjct: 641 QRLNADALRFQELYYTE 657 >gi|168181624|ref|ZP_02616288.1| DNA primase [Clostridium botulinum Bf] gi|182675147|gb|EDT87108.1| DNA primase [Clostridium botulinum Bf] Length = 590 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 154/630 (24%), Positives = 282/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I + D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIEDL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYEYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVKILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ + T + L +V + ++ Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590 >gi|153939445|ref|YP_001392216.1| DNA primase [Clostridium botulinum F str. Langeland] gi|152935341|gb|ABS40839.1| DNA primase [Clostridium botulinum F str. Langeland] gi|295320213|gb|ADG00591.1| DNA primase [Clostridium botulinum F str. 230613] Length = 590 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 154/630 (24%), Positives = 284/630 (45%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKPIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIRDKRQAIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 SERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ ++T + L +V + ++ Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590 >gi|325688385|gb|EGD30404.1| DNA primase [Streptococcus sanguinis SK72] Length = 602 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 266/634 (41%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEEKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 +CF C GD F+ G F+++VQ +A AG+PL V ++ L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVFFMDAVQIVAERAGIPLAVETAGNDRPRQSHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ ++ F++G AP+ L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEEARAYLYQRGLTDDVLKHFQIGLAPNEGNYLHKSMAGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + +N YD F+NR++FP+ + GQV+AF GR G KY N Sbjct: 185 NTIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDSGQVVAFSGRIWQAVATDGHQAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N V Sbjct: 243 SRSTAIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L K +I+L +DGD G A KA+D + V V + Sbjct: 293 ASMGTALTPEHVQHLSKYCKKIILSYDGDRAGQAATAKALDEL-----RDMTVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F+ + + L+ ++ + + + E + I Sbjct: 348 NLDPDEFLAKNSEEDLQHLLSKTRISNVEFLLHHLKPDNIENLQAQIEFVEKMAPIIAKT 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + Y + + L + + + R ++++R ++ + Sbjct: 408 KSITAQNSYIYMLAELLPDFDYQQVEQTVNNSRLAERSSRSQEAPIQQSQPAVMQFSPSN 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E + +I+HP ++ QY+ D +D+ ELQ L+ L ++ E Sbjct: 468 RLSRLMRAENHIFHRMIHHP-LILNQYRLREDFVFDSEELQALYEILLAN-GEVTPQDLS 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + L + L +V + + + + +L + Sbjct: 526 QLPDHVQQAWYRVLEEDL-----------------PDEVLEDELKEVEETREREILRKHN 568 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K+I + + G+ + + L E ++ Sbjct: 569 QFISKKIREASHSGDTDTALSELERLIEQKRRME 602 >gi|87124241|ref|ZP_01080090.1| CHC2 zinc finger:Toprim domain [Synechococcus sp. RS9917] gi|86167813|gb|EAQ69071.1| CHC2 zinc finger:Toprim domain [Synechococcus sp. RS9917] Length = 696 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 173/670 (25%), Positives = 299/670 (44%), Gaps = 63/670 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL L SF + V LA +P+ V+ +++ + + L Sbjct: 60 YYCFSCGAGGNAIKFLMELQRRSFSDVVLELARKYQLPVETVEGPQQERLRQQLSRRETL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F LK+A YL ++RG+ +E F LGYAPD L +HL+Q Sbjct: 120 QRALALAAGWFRSQLKSAGGTEALGYLKEKRGLREATLEQFGLGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + E + AGL++ YDRFR+R+I PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K+ R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDRAANAIRKADRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + + RI+L FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSGQQITQLCRCTDSKRIILNFDADRAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ E R + D+ + + + Sbjct: 349 LPSGKDPDEFLQDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLDRADQFQQAVSGMVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR +Y Q + +RL + + R K R + ++ +S Sbjct: 409 GKLPQSALRTHYLQQVAERLSGGQSRVALQLEDDLRQQVKGERWHGRAARFEQPGES--- 465 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFL------- 522 + EA LL+ ++ P+ E +EL + + LW+ + Sbjct: 466 -----SQRERCEAQLLMLYLHCPSHRPEIRRELRQRELEDFGLQHHRLLWAAISELEETN 520 Query: 523 -----FSDFVEQKYFLPE----EIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 E+ + L ++ L+ +L + L + E Sbjct: 521 LGAGRLEAISRGDDPGDALADLELARLLTDQLLLENSALVTRLTPLLEPGELQRLSLEQP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +R + KR R L ++ E +E+ IA + + + + + Sbjct: 581 LQQLRGTAAMLERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEEQQDPQPSVDME-QR 639 Query: 624 VHIQIHQIES 633 + + + + Sbjct: 640 IQLMFETLNA 649 >gi|229552309|ref|ZP_04441034.1| DNA primase [Lactobacillus rhamnosus LMS2-1] gi|258539718|ref|YP_003174217.1| DNA primase [Lactobacillus rhamnosus Lc 705] gi|229314291|gb|EEN80264.1| DNA primase [Lactobacillus rhamnosus LMS2-1] gi|257151394|emb|CAR90366.1| DNA primase [Lactobacillus rhamnosus Lc 705] Length = 589 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 266/633 (42%), Gaps = 47/633 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+SK + Sbjct: 2 IPEATVDQVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNESKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGIPLDVQVGQAAPVDPEVAKQQHILQ 116 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D +HH L + + YL +RG+ IE FKLGYAP+ R L L + + Sbjct: 117 DTADLYHHILVNTEKGEAALAYLHKRGLTDETIEEFKLGYAPEERNLLVAFLNNRHVEYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ + G+V+ F GR L +S KYLNSPET Sbjct: 177 DQRASGLFVEDQAG-KLFDRFNDRVMFPLTDANGKVVGFSGRILQSDKSQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDILFNLHRAKAEFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVTMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +IR G AF+ + L + + + + I I D Sbjct: 344 EYIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMHNDQAKLTYLNAALRIIGKISDPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + + + A+ P + L + Sbjct: 404 RAVYVKQLAETTEVPIAALNQSLPSPQTRRPAAAQPPIADQPVRPL-----------DRY 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 453 TAAQRQLLYYVWHDDLVMQRLKN--ATFVFPTPYFQTLFTGWLRFLHEQPDGELAGFLDR 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + Q +EA I ++ Q A + + + I++ Sbjct: 511 V-DPELSGVAADVAMQSLPEA-----SEATIDELIQTITSASTVS--------RLQAIKQ 556 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 557 AITEAQRLGDKQKQGELTVQYVNLMKLLKQQQG 589 >gi|170758423|ref|YP_001788252.1| DNA primase [Clostridium botulinum A3 str. Loch Maree] gi|169405412|gb|ACA53823.1| DNA primase [Clostridium botulinum A3 str. Loch Maree] Length = 590 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 284/630 (45%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKGKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKVIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ + T + L +V + ++ Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590 >gi|237796392|ref|YP_002863944.1| DNA primase [Clostridium botulinum Ba4 str. 657] gi|229262673|gb|ACQ53706.1| DNA primase [Clostridium botulinum Ba4 str. 657] Length = 590 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 154/630 (24%), Positives = 282/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I + D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIEDL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVKILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ + T + L +V + ++ Sbjct: 561 KEYEAQGKLDDTIKMSQELIKVKKTLGAMK 590 >gi|170754369|ref|YP_001782572.1| DNA primase [Clostridium botulinum B1 str. Okra] gi|169119581|gb|ACA43417.1| DNA primase [Clostridium botulinum B1 str. Okra] Length = 590 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 154/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKPIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAAKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGDKRQAIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 SERFILQLMFNYNNIYEYIKNSINEQDIIEETHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE++ K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKEDLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ ++T + L +V + ++ Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590 >gi|187929500|ref|YP_001899987.1| DNA primase [Ralstonia pickettii 12J] gi|309781723|ref|ZP_07676456.1| DNA primase [Ralstonia sp. 5_7_47FAA] gi|187726390|gb|ACD27555.1| DNA primase [Ralstonia pickettii 12J] gi|308919364|gb|EFP65028.1| DNA primase [Ralstonia sp. 5_7_47FAA] Length = 603 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 180/643 (27%), Positives = 291/643 (45%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G S++E+++ LA G+ +P P + E+ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGQSYVEAIKDLAQSVGMVVPEERGGLPPAARAEQQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR--Q 175 ++ A D + L++ YL RG+ F LGYAPD SL + Sbjct: 117 GDVMARACDHYRKQLRS--APNAIQYLKGRGLTGEIAAHFGLGYAPDDWQSLEAVFGPYR 174 Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + + +IEAGL+I+ + + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 EDATAAPLIEAGLVIESEKTGADGSHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFDYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H + F Sbjct: 284 FANAVATLGTACTPTHVQKLLRQVDTVIFSFDGDSAGRRAARRALEACLPHATDNKTIKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDSF+R G AF + + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPAEHDPDSFVREEGTEAFAREVHNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + D I G + R ++ R ++ Sbjct: 404 LLSAMPAGGLRLQIVRGLADMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + A + +L + L + L Sbjct: 463 L------------EQKVLRLLMRYPALAARLDAD-ARAQLTAPQLPQGEVLAALLGECDA 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V + E + + Q+ LA Sbjct: 510 VGPEVHFGAFVERLGQTPYAEAFAGLRTAVLQDDIEL---EPAMSEFDTAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ E +++++ + G+ +K + L E+ + Sbjct: 563 -EPLKRELEMLQRKM-EAGHAGDDDK--ERMRWLVGEISRRRQ 601 >gi|183983630|ref|YP_001851921.1| DNA primase DnaG [Mycobacterium marinum M] gi|183176956|gb|ACC42066.1| DNA primase DnaG [Mycobacterium marinum M] Length = 656 Score = 349 bits (896), Expect = 6e-94, Method: Composition-based stats. Identities = 142/654 (21%), Positives = 253/654 (38%), Gaps = 46/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 20 RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ LI Sbjct: 76 FHCFGCGEGGDVYAFVQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLIA 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D+ A F G+AP SL +HL++KGF Sbjct: 136 ANAAAAAFYAEALESPEAALARKYLTERSFDAAAAHHFGCGFAPSGWDSLTKHLQRKGFE 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+P Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMDAKYVNTP 253 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K L+ A + + ++VEGY DV+++ AGV V+S Sbjct: 254 ETLLYKKSSVLFGIDLAKRDIAR----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + L +L +L ++ FDGD+ G AA KA D + Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQNLAG---QSFV 360 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G TA L+ PL + + + + R Sbjct: 361 AVAPDGMDPCDLRLASGDTALRDLVARRTPLFEFAIRTALAESDLESAEGRVGALRRCVP 420 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + IKD LR Y++ + + Q+ + E R + A + + + Sbjct: 421 MVGQIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGEAKNATRPNRGGAATKTPRRVAHE 480 Query: 466 LM-----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + + + L + + +PA+ + L + + + + Sbjct: 481 STDTGSAEPAAARPDPRDPTLWPQREALKSALQYPALAGPVFDTLTVESFTHPGYAAVRA 540 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + ++ L L ++ + + Y Sbjct: 541 AIDAAGGTATGVTGAQWMDMVRQQTTSPLTSGLISELTVETIQVDEEKLP------RYIG 594 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 595 GVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648 >gi|116074626|ref|ZP_01471887.1| DNA primase [Synechococcus sp. RS9916] gi|116067848|gb|EAU73601.1| DNA primase [Synechococcus sp. RS9916] Length = 690 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 177/668 (26%), Positives = 300/668 (44%), Gaps = 65/668 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL L SF + V LA +P+ VD +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMELQRQSFSDVVLELARKYQLPVETVDGPQQERLRQQLSRREKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A+ +F L+ A + YL E RG+ ++ F+LGYAPD L +HL+Q Sbjct: 120 HRALALASGWFRTQLRTAAGQGALQYLRESRGLSEATLDAFELGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S E + AGL++ YDRFR+R++ PIR +G+VI FGGR+L G KYLN Sbjct: 180 EGLSPEMLEAAGLVVPRKGGNGFYDRFRHRVMVPIRDRQGRVIGFGGRSL-DGAEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRCSDGKRIVLNFDADGAGIRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ E R D+ + L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLAKADQFQQGVSALVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R + ++ +SS Sbjct: 409 GKLPPSAIRTHYLQQVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSARFEQPGESSQR 468 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527 + EA +L ++ P+ +EL + + LW+ L Sbjct: 469 ERS--------EAEILRLYLHCPSHRSAIRRELRQRELEDFALQHHRLLWASLTDLEETN 520 Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 ++ + L ++ L+ +L + L Sbjct: 521 IGAGRLEAVSRGQDSGDELADLDLPRLLTDQLLLENSALVSRLTPLLEPGELQLLALANP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +R + KR R L ++ + +E+ IA + A+ E ++ L + + Sbjct: 581 MQQLRGTAAMLERQKSLKRCRHLLEAWGGQRLQTLERCIASLIAQ-EQDQPQTLAN--ID 637 Query: 624 VHIQIHQI 631 + +I + Sbjct: 638 MEQRIQAL 645 >gi|322807254|emb|CBZ04828.1| DNA primase [Clostridium botulinum H04402 065] Length = 590 Score = 349 bits (896), Expect = 7e-94, Method: Composition-based stats. Identities = 154/630 (24%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ ++ I ++I + N Y+ CPFH EKTPSF + K Y Sbjct: 2 ISEDVVQKVIELNDIVDVISGDIKLKNSGRN-----YFGLCPFHHEKTPSFSVSQDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++++ +F E+++ LA + + + + + ++ Sbjct: 57 KCFGCGEAGNVVTYVMKTKNVAFPEAIKILAERVNIDIEEDKKENT--NNPKDKIYKINV 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L +K Y RG+ I+ F LGY+ DS L HL+ KG++E Sbjct: 115 DAARYFFNNLI--INKNAINYFLNRGVTKSIIKRFGLGYSKDSWDGLLRHLKTKGYTELD 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I N + YDRFRNR++FP+ RG+VI FGGR L KYLNSPET++F Sbjct: 173 MLSAGLIIKSKNG-SYYDRFRNRVMFPVFDYRGKVIGFGGRVL-NNAKPKYLNSPETMVF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ + +I+VEGYMD ++L Q G++N V+SLGTAL Sbjct: 231 KKGINLYGLNYAVKENKD-----------RVLIIVEGYMDCITLHQYGIKNSVASLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + + ++++ +D D G A + +++ G V + + G+DPD F Sbjct: 280 TTNQARLLKRYADKVIISYDSDTAGQLATQRGLEI---LKDVGLGVEILTVPDGKDPDQF 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ +GK ++ KL+ E+LPL++ K ++ + + + I ++ D + Sbjct: 337 VKAHGKESYLKLVKEALPLIEYKIKISKQDLNIGNKRQVIQYIDRYIKIIENL-DPVEKD 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + Q + + + +KN G ++++ K L Sbjct: 396 MYIRRLSEETNIEIQTLYDQLNKKNQNSRKN-------GKEVNMLEAFGQKLYLEPAYIR 448 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L + N+ I + + + + ++ ++ + + + LC Sbjct: 449 AERFILQLMFNYNNIYEYIKNSINEQDIIEEIHKAIYKYIKDTLEDSNIQNKKLHIETLC 508 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ T D + + L + L + KE + K+I Sbjct: 509 NKNVET--------SKEWVNILNTNFIYKEDESKKFIDDAILNIKKYKLEKYKENLLKKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A+G+ ++T + L +V + ++ Sbjct: 561 KEYEAQGKLDETIKMSQELIKVKKTLGAMK 590 >gi|28378606|ref|NP_785498.1| DNA primase DnaG [Lactobacillus plantarum WCFS1] gi|28271442|emb|CAD64347.1| DNA primase DnaG [Lactobacillus plantarum WCFS1] Length = 626 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 140/651 (21%), Positives = 262/651 (40%), Gaps = 50/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I++ IGQYV + N + CPFH+E+TPSF N+ K Sbjct: 4 RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CFSC G+ SF+ L SF E+V ++A + LP K++ Q DL Sbjct: 59 FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++L + + H L + YL ERG+D I+ F +GYAP + L + ++ Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 + + ++GL I+ DRF +R++FPI+ + G+VIAF GR L K KYLN Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+K L+NF A ++ ++L EG+MDV++ ++G+QN V Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LT+ Q+ +L +++ + +C+D D PG +A +A+ L+ + V + + Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R G+ F + + + + ++ + + Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------- 463 + + Y + + P Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDEPQVAPPPAPAPLG 464 Query: 464 -QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + E LL L+N + +A + ++ Q++ + Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + F F + + ++ L+ + ++ + Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + L Q + ++ G + L L +++ Q Q++ Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623 >gi|256843284|ref|ZP_05548772.1| DNA primase [Lactobacillus crispatus 125-2-CHN] gi|256614704|gb|EEU19905.1| DNA primase [Lactobacillus crispatus 125-2-CHN] Length = 606 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N K F Sbjct: 4 RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A + +P + L+++ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +D ++ FK+GYAP + L +LR KG+ + Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + YDRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + ++L EGYMDV++ +AGV++ ++S+G Sbjct: 236 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + + +L D KR + + + E+ I +++ Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469 + Y++ + + R ++N+ P Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + K PS + LL I+ + + + N + + L Sbjct: 464 PTEQSVVKKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + E+ L + DA + ++ I +V AL L + R Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E++ Q+ K +A+ + + + + Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605 >gi|119899515|ref|YP_934728.1| DNA primase [Azoarcus sp. BH72] gi|119671928|emb|CAL95842.1| DNA primase [Azoarcus sp. BH72] Length = 606 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 179/635 (28%), Positives = 293/635 (46%), Gaps = 45/635 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F++DLL I I ++I +Y+ + N Y+ACCPFH E + SF + +K FY Sbjct: 2 IPQAFVQDLLSRIDIVDVIERYLPLKKGGAN-----YFACCPFHGENSASFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIRLI 121 +CF C G + FL G F+++V+ LA AG+ +P ++ + L + Sbjct: 57 HCFGCGAHGSAIGFLMEYSGLGFVDAVKELANQAGMQVPDDGQRVNAAQSGEHDRLFDAV 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A F+ +LK YL RG+ F +GYAPD +L++ + + Sbjct: 117 AAAARFYRDALKA--APIAIDYLKRRGLSGEVAARFGIGYAPDDWQALQKVF--PDYQAK 172 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + +AGL+ID D YDRFR R++FPI RG++IAFGGR L +GE KYLNSPET L Sbjct: 173 TLADAGLVIDNDQGRR-YDRFRGRVMFPIHDRRGRIIAFGGRVLDQGEP-KYLNSPETPL 230 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+ LY F A ++ + F ++VEGYMDV++L Q G++N V++LGTA Sbjct: 231 FEKGRELYGLFLAQKAIR----------DAGFALVVEGYMDVVALAQFGIENAVATLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T + ++ L + + R+V CFDGD+ G RAA +A++ L L + F+ L DPDS Sbjct: 281 TTTHHIQALLRHTDRVVFCFDGDNAGRRAARRALENALDALRDDVTLAFLFLPTEHDPDS 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R G AF + E+ PL L + E+ T + RA L + + I L+ Sbjct: 341 FVRSEGAAAFRQAAAEATPLARTLLDQLQEDLDLATAEGRARLVHDARPLVTRIPAPLLK 400 Query: 422 YYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +A+ + +L Q ++ +G + GP + S +G + Sbjct: 401 LQLIKAVAEASQLTQAEVEHAFGLAGPQAGTSPPRADSPRPGPRRPSGFSRPARGPGRRA 460 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EE 536 PS A LL +++HPA+ +L E + L + + Sbjct: 461 PSTT-ATLLRLVVHHPALAARLPADLLPAE--TPESRALV-AIVDLVSLGEPLPAGGVGG 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +R + E L ++ ++ D + E D + ++R+ + Sbjct: 517 LIERFRDTPHAETLSRVAAELIDTEFDDSAIETLFEDALRKLG--------ADAVTREID 568 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + E + L E+ ++ + Sbjct: 569 AL------LALEREQGLSTAERHRLSELILERRNL 597 >gi|224370026|ref|YP_002604190.1| DnaG9 [Desulfobacterium autotrophicum HRM2] gi|223692743|gb|ACN16026.1| DnaG9 [Desulfobacterium autotrophicum HRM2] Length = 602 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 267/642 (41%), Gaps = 47/642 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I +++ I +I + V + N Y+ CPFH EK+PSF + K Sbjct: 1 MLIPQEKISEIINASDIVEVISEVVLLKKSGRN-----YFGLCPFHSEKSPSFSVSPEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLI 118 ++CF C G+ SFL G SF E+V+ AA + + VDP+ +++ ++ +L+ Sbjct: 56 IFHCFGCSAGGNVFSFLMRHHGISFPEAVKMAAARYNIVVEMGSVDPERKRRIALKEELL 115 Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 RL + L ++ + YL +RGI I+ F LGYA D + R Sbjct: 116 RLNTAVMKHYKVLLTDSPGAQGARNYLRDRGITPETIDTFSLGYAEDRWDDMVRFFRHLK 175 Query: 178 FSEEKIIEAGLL----IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 ++GL+ D YDRFRNR++FPI + QV FGGR + KY Sbjct: 176 LGRNLAEQSGLVLERASDRGGKKGYYDRFRNRIVFPIVDTNMQVAGFGGRVM-DDSMPKY 234 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET ++ KG+ LY A Y + + +VEGY D LSL Q G++N Sbjct: 235 LNSPETPVYSKGQILYGLHLAKQYCR----------QVDCVYIVEGYFDFLSLFQNGIKN 284 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGTALT +R L + R VL FD D+ G+ AA + + G V ++L Sbjct: 285 TVASLGTALTVDHVRRLKGFATRAVLVFDSDNAGINAAKRCV---STFAAEGVDVRILVL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +G DPDSF+ G AF++ +++ ++D L + ++ + R + +K + Sbjct: 342 PKGHDPDSFVNSEGADAFKRAADQAMSVMDFLTDTAMKK-HGSSVEGRIAVLEEMKLPLA 400 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I+D R Y + + ++L + S Sbjct: 401 RIEDSAARSLYVRGLAEQLGIDESAVLERVRNVVSTQGGGQPVSLPG----NGDLSDPDD 456 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + RE +L +I HP + +E + + +++ + + Sbjct: 457 SGETLESYRREEQMLAMIIQHPEVGREALNQGVLDHFYCERFRRIGRIVAEQDGNEGMMA 516 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ++ +L+ L + + ++ + + + Sbjct: 517 ADLMAAMADDQD-RQLVASLAM------MDGGLEGDVLEKAVFLMKRIVKVRVKTE---- 565 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + QI + G+ + + +L + +I ++ E Sbjct: 566 --NTLANQIRRAEQGGD---SRLPFELLKKRQKEIRKLHGYE 602 >gi|78187443|ref|YP_375486.1| DNA primase [Chlorobium luteolum DSM 273] gi|78167345|gb|ABB24443.1| DNA primase [Chlorobium luteolum DSM 273] Length = 633 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 168/654 (25%), Positives = 276/654 (42%), Gaps = 42/654 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ I ++I Y+ + + A PF EKTPSF + K Y Sbjct: 2 IPHETIDEVRQAADIVDIISDYLTLRQAGR-----SFKALSPFTQEKTPSFVVSPEKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ SF+ + SF E+V+ +A AG+ + K ++ + + Sbjct: 57 KCFSTGKGGNVFSFVMEMEKVSFPEAVELVAKRAGIDISRFTSKNAGEDAKEDTRTNTLR 116 Query: 123 VATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FH +L+ Y ERG+ + I+ F LGYAP L + G + Sbjct: 117 WAARHFHSTLERDHGSPGYAYLAAERGLSATTIKSFGLGYAPPGWDHLLHAAKNAGIERK 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 + GL+ + + YD FRNR+IFPI S GQV+ FGGRTL K ++ KYLNS E+ Sbjct: 177 HLESLGLITENRQKKSWYDTFRNRVIFPIFSIGGQVVGFGGRTLEKSPDTPKYLNSQESS 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K K LY A N ++ SS+ ILVEGYMDVL+L QAG+ + V+S GT Sbjct: 237 IFEKSKLLYGLNTAKNEIR----------SSAQAILVEGYMDVLALHQAGITSAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT YQ +++ + + ++ +D D G ++ ID++L ++L G+DPD Sbjct: 287 SLTRYQAKIIGRYAKSVLFVYDADPAGKKSMMAGIDILLSE---NITPIILMLPPGDDPD 343 Query: 361 SFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SF++ G+ F L ESL +D + E +F TP+ +A+ + I D Sbjct: 344 SFVKREGREKFLALSRKESLSFLDFQIRFHREAGAFETPELKADAIGSMVRTIGLAADPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y Q + +++ Q N R P ++ VK ++ Sbjct: 404 RRELYLQELSEKIGISLQALNEVLPAG------NPGKRQSAPPPPPPGRAKQVKPIVAGP 457 Query: 480 PSLREAALLLTLIN---HPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVE-----QK 530 S+ E + L+ + ++ E + N Q ++ + + E Sbjct: 458 ISVLEKTFVKALLESTAYGNVVLEFAASHEAMLMLRNPAAQHIFLHMIRRYHEISADPDA 517 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L L + W T+ + R+ L +K + Sbjct: 518 RIDVATEIGLFGRPDAEDLATGLLMDQPVSNKWLEKTDLHGDSARRCLGMFLDAFKNL-I 576 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH--QIESQE---AMIE 639 L +E ++ + + + E EK L + +I +E E A++E Sbjct: 577 LEPLLDEKDRLMEAIRTEAETEKEIALSREKITLDKKIRTTALELSEMIAAILE 630 >gi|189352483|ref|YP_001948110.1| DNA primase [Burkholderia multivorans ATCC 17616] gi|189336505|dbj|BAG45574.1| DNA primase [Burkholderia multivorans ATCC 17616] Length = 622 Score = 349 bits (895), Expect = 8e-94, Method: Composition-based stats. Identities = 174/654 (26%), Positives = 276/654 (42%), Gaps = 63/654 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSTRGGGGAGGDYPAPVSK 116 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 + T L ++ A D++ L+ YL RG+ F LGYAPD + Sbjct: 117 SVATALSDVMATACDYYRKQLRG--APAAIQYLKNRGLTGEIAARFGLGYAPDGWQNLEA 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPNYRDDALVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGSG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H + Sbjct: 284 LGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + ++PL L ++ + P+ RA+ Sbjct: 344 RFLFLPPEHDPDSYVREFGADAFSDQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR I DRL F++ R Sbjct: 404 KPLLQALPANALRAQIMHMIADRLDIPFEEVAALSEVDARIA---------------AAP 448 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 ++ + E L TL+ HP I E + +L++ + Sbjct: 449 RQAPARSDRRRVTESEKRALRTLVMHPRIALALDDEQVATLRALPRIGELFAEVVDHARA 508 Query: 529 QKYFLPEEIHQRL-----CERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ- 579 + + + E+ +++ D VRD L + EA R+ + Sbjct: 509 LGDGAEFRLLSDVLRTSPNSATYEEIFREILDYDENVRDLLLQNPDDEAVAERQREQERI 568 Query: 580 -----QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 AGEELQAAVLKMRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 620 >gi|227878690|ref|ZP_03996604.1| DNA primase [Lactobacillus crispatus JV-V01] gi|262046493|ref|ZP_06019455.1| DNA primase [Lactobacillus crispatus MV-3A-US] gi|293380133|ref|ZP_06626220.1| DNA primase [Lactobacillus crispatus 214-1] gi|312978175|ref|ZP_07789919.1| DNA primase [Lactobacillus crispatus CTV-05] gi|227861705|gb|EEJ69310.1| DNA primase [Lactobacillus crispatus JV-V01] gi|260573364|gb|EEX29922.1| DNA primase [Lactobacillus crispatus MV-3A-US] gi|290923303|gb|EFE00219.1| DNA primase [Lactobacillus crispatus 214-1] gi|310894893|gb|EFQ43963.1| DNA primase [Lactobacillus crispatus CTV-05] Length = 606 Score = 349 bits (895), Expect = 9e-94, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N K F Sbjct: 4 RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A + +P + L+++ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +D ++ FK+GYAP + L +LR KG+ + Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + YDRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + ++L EGYMDV++ +AGV++ ++S+G Sbjct: 236 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + + +L D KR + + + E+ I +++ Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469 + Y++ + + R ++N+ P Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + K PS + LL I+ + + + N + + L Sbjct: 464 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + E+ L + DA + ++ I +V AL L + R Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E++ Q+ K +A+ + + + + Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605 >gi|227890105|ref|ZP_04007910.1| DNA primase [Lactobacillus johnsonii ATCC 33200] gi|227849549|gb|EEJ59635.1| DNA primase [Lactobacillus johnsonii ATCC 33200] Length = 603 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 152/634 (23%), Positives = 277/634 (43%), Gaps = 44/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGEAVKPLSPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 AT+F+ H L + +R Y +R + S +E FK+GYAPD+ L +LRQ+G+++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 ++ E+GL ++ + +DRFR+RL+FP+ G + F GR +SK +++ KY+NSPET Sbjct: 176 AELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISKDKTIAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + S +IL EGYMDV++ +AG+Q+ V+S+G Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L DP Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + +L +D L +R + + E+ I + D Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + + R ++ H+ + L + K + Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462 Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL I+ + + + KL F + Sbjct: 463 GIDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E +L + + + S + + ++ + + + Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ K + + + + + Sbjct: 568 QLNDLLNQLKDAQRKQDDSLELEIAQKVIALRRK 601 >gi|56477912|ref|YP_159501.1| DNA primase [Aromatoleum aromaticum EbN1] gi|56313955|emb|CAI08600.1| DNA primase [Aromatoleum aromaticum EbN1] Length = 609 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 186/623 (29%), Positives = 284/623 (45%), Gaps = 28/623 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I ++I +++ + N Y+ACCPFH EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLARVDIVDVIERHLPLKKGGAN-----YFACCPFHGEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C G + FL G F+E+V+ LAA AG+ +P + +K LI Sbjct: 57 HCFGCGAHGSAVGFLMEYSGLPFVEAVKELAAQAGLQVPQERGPNPRNDKNPAHAALIEA 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + VA + L+ + YL RG+ F +GYAPD LR + Sbjct: 117 MTVAARHYRDQLR--QASAAIDYLKRRGVSGEIAARFGIGYAPDDWQGLRSIF--PDYDA 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++EAGL+I+ + YDRFRNR++FPI+ RG+VIAFGGR L GE KYLNSPET Sbjct: 173 KALLEAGLVIENEAGRR-YDRFRNRIVFPIQDRRGRVIAFGGRVLDSGEP-KYLNSPETP 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LY A ++ + I+VEGYMDV++L Q G+ N V++LGT Sbjct: 231 LFEKGRELYGLLQAQKSIR----------DAGHAIVVEGYMDVVALAQHGIGNSVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T + + +L + S RIV CFDGD G +AA +A++ L L + F+ L DPD Sbjct: 281 ATTTHHINVLLRQSQRIVFCFDGDAAGRKAARRALESSLEALRDDVTLAFLFLPEQHDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SF+R +G AF + + L + L + N + +T + RA L K + I L Sbjct: 341 SFVRAHGADAFRQAAGAATTLTNFLLRELQSNCALDTAEGRARLVHEAKPLVTRITAPML 400 Query: 421 RYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-KLS 477 R ++I + + Q + S GR L G + Sbjct: 401 RLQIVKSIAEACQFSQSEIERAYGLSEEGRERPGEHAAAGPHHHPAAAPPRRLTPGMRPR 460 Query: 478 KKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 +KP LL ++ HPA+ + + + L + + Sbjct: 461 RKPPSTVGTLLRLVLQHPALAARLPVDLVPTMNAEGEALVAIIDA-TNTGDLAANVGLGA 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +R E GE L + ++ DA A E D + + L +R++E Sbjct: 520 LVERFRETPHGETLAKTAGELVDAEFDEAVVEVLFEDTLRKLHADTIAREIDGLTARERE 579 Query: 597 EIEKQIAQVTAKGEAEKTAILIS 619 I + + L++ Sbjct: 580 SGLSSIERHRLAALLIEKMNLVN 602 >gi|300768134|ref|ZP_07078039.1| DNA primase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494198|gb|EFK29361.1| DNA primase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 626 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 140/651 (21%), Positives = 262/651 (40%), Gaps = 50/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I++ IGQYV + N + CPFH+E+TPSF N+ K Sbjct: 4 RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CFSC G+ SF+ L SF E+V ++A + LP K++ Q DL Sbjct: 59 FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++L + + H L + YL ERG+D I+ F +GYAP + L + ++ Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 + + ++GL I+ DRF +R++FPI+ + G+VIAF GR L K KYLN Sbjct: 178 QSDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+K L+NF A ++ ++L EG+MDV++ ++G+QN V Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LT+ Q+ +L +++ + +C+D D PG +A +A+ L+ + V + + Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R G+ F + + + + ++ + + Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS----------- 463 + + Y + + P Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDEPQVAPPPAPAPLG 464 Query: 464 -QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + E LL L+N + +A + ++ Q++ + Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + F F + + ++ L+ + ++ + Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + L Q + ++ G + L L +++ Q Q++ Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623 >gi|170725516|ref|YP_001759542.1| DNA primase [Shewanella woodyi ATCC 51908] gi|169810863|gb|ACA85447.1| DNA primase [Shewanella woodyi ATCC 51908] Length = 575 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 174/628 (27%), Positives = 294/628 (46%), Gaps = 56/628 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARIDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA GV +P ++++ + DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEDLAGQLGVEVPREKGTGPRRDEGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ DK+ YL RG+ + +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQNNDKQKVLDYLAHRGLSNDVVEHFNIGFAPDGWDGLLSRYRQSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG++I+ DN YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMVIENDNG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQKHRDPQK----------VLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + +V C+DGD G AA++A++ L L PGN+V F+ L GED Sbjct: 284 GTSTTADQFQLLLRSAKEVVCCYDGDRAGTEAAWRALETALPLLKPGNQVKFMFLPEGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK FE I E+ L + L++ ++ L I I+D Sbjct: 344 PDTMVRQVGKEVFENQIEEAKLLPEFLFETLAAQY----GSDKGTLAKQAIKLIEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L ++ + + K + + KG L Sbjct: 400 VLQSLLLENLAYKLGMNSAEELKRKLGFSSKEQAKPLQTKALKGRGTPL----------- 448 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ +P + + ++ L+ + ++ Sbjct: 449 -------RLAIALLVQNPLLGEGLPEQ--------PALKHIKMAGIELLTLLLDITRVQV 493 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E + ++ L + +++ +++ L ++ + + ++ +E Sbjct: 494 KN---SAQLLEQFRGDEQLSTLKKLTQWDHQVADENLQLEFRKTL-IWLNNQYIEQRYQE 549 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625 + + Q K E + LI+++ + Sbjct: 550 L--SLKQNHTKEERIQLTKLIAVIKGLK 575 >gi|42519242|ref|NP_965172.1| DNA primase [Lactobacillus johnsonii NCC 533] gi|41583530|gb|AAS09138.1| DNA primase [Lactobacillus johnsonii NCC 533] Length = 603 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 152/634 (23%), Positives = 278/634 (43%), Gaps = 44/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGETVKPLSPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 AT+F+ H L + +R Y +R + S +E FK+GYAPD+ L +LRQ+G+++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 +++ E+GL ++ + +DRFR+RLIFP+ G + F GR +S +++ KY+NSPET Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLIFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + S +IL EGYMDV++ +AG+Q+ V+S+G Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L DP Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + +L +D L +R + + E+ I + D Sbjct: 343 DEYVKKYGVEKYQTEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + + R ++ H+ + L + K + Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462 Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E LL I+ + + + KL F + Sbjct: 463 GTDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E +L + + + S + + ++ + + + Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ K + + + + + Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601 >gi|191638498|ref|YP_001987664.1| DNA primase G [Lactobacillus casei BL23] gi|190712800|emb|CAQ66806.1| DNA primase G [Lactobacillus casei BL23] Length = 595 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 163/633 (25%), Positives = 268/633 (42%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+ K + Sbjct: 2 IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D FHH L N + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ S GQVI F GR LSK ++ KYLNSPET Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G AF+ + L + + N + I I + Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + D + A + P + + Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + QV TEA I ++ Q A + + + I++ Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595 >gi|295693059|ref|YP_003601669.1| DNA primase [Lactobacillus crispatus ST1] gi|295031165|emb|CBL50644.1| DNA primase [Lactobacillus crispatus ST1] Length = 606 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N K F Sbjct: 4 RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A + +P + L+++ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +D ++ FK+GYAP + L +LR KG+ + Sbjct: 117 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + YDRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 177 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + ++L EGYMDV++ +AGV++ ++S+G Sbjct: 236 EIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 286 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + + +L D KR + + + E+ I +++ Sbjct: 344 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469 + Y++ + + R ++N+ P Sbjct: 404 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 463 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + K PS + LL I+ + + + N + + L Sbjct: 464 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 519 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + E+ L + DA + ++ I +V AL L + R Sbjct: 520 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 566 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E++ Q+ K +A+ + + + + Sbjct: 567 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 605 >gi|186472769|ref|YP_001860111.1| DNA primase [Burkholderia phymatum STM815] gi|184195101|gb|ACC73065.1| DNA primase [Burkholderia phymatum STM815] Length = 630 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 170/661 (25%), Positives = 280/661 (42%), Gaps = 64/661 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGKYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL G SF E+V LA G+ +P + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLSFPEAVNDLAQSVGLTVPQEPSPMRGGASGGAAYGAGGE 116 Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 T L +++ A++F+ L+ YL +RG+ + F LGYAP Sbjct: 117 AYAPAVPKAVTTALSDVMQTASEFYKAQLRG--APNAIQYLKKRGLTGEIAKRFGLGYAP 174 Query: 164 DSRY---SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 D + + R E ++ D YDRFR R++FPIR+ +GQVI F Sbjct: 175 DGWQNLEAAFPNYRDDALVESGLVIVSEKSDAQGQNRRYDRFRERVMFPIRNVKGQVIGF 234 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GGR L GE KYLNSPET LF+KG LY F A ++ ++++VEGY Sbjct: 235 GGRVLDGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQKYVLVVEGY 283 Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MDV++L Q G +N V++LGTA T ++ L + + +V FDGD G RAA +A+D L Sbjct: 284 MDVVALAQLGFENAVATLGTACTPIHVQKLMRQTDTVVFSFDGDSAGRRAARRALDACLP 343 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 H + F+ L DPDS++R +G AF + + ++PL L + + P+ Sbjct: 344 HAADNRTIRFLFLPAEHDPDSYVREFGTQAFAEQVRRAMPLSQFLLNEVLAGKELDQPEG 403 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 RA K + + LR DRL F++ R Sbjct: 404 RARALFDAKPLLQMLPANALRAQIMHMFADRLDVPFEEVAALCEVDARIAA--------- 454 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + S K + + E L L+ HP I+ +E +L+ Sbjct: 455 ------VARSAPARKDRRSVTGLEQRALRNLVMHPRIVAVLDEEEERALLTVTRHGELFE 508 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVD 573 + + ++ L G F E+ +++ + L +A + + Sbjct: 509 EVTTHARGLGDSAEFQLLSDLLRNGANAPTFEEIFREILDYDENVRDLLLKNPEDATVAE 568 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R+ +++ + +L + + +++ Q++ + T + E+ ++ Sbjct: 569 ERREHERLAGEELKAAILKMRYDAYSERLTQLSRQSS--LTPEELKEYQELDRTRADMKR 626 Query: 634 Q 634 Q Sbjct: 627 Q 627 >gi|113953836|ref|YP_730818.1| DNA primase [Synechococcus sp. CC9311] gi|113881187|gb|ABI46145.1| DNA primase [Synechococcus sp. CC9311] Length = 691 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 179/685 (26%), Positives = 295/685 (43%), Gaps = 77/685 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G++V ++ ++ CPFHD+ PS + K F Sbjct: 3 RLHPRTIDAVKERADIVDVVGEHVVLKKKGR-----EFVGVCPFHDDSKPSMTVSPQKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ + + L Sbjct: 58 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPVETVDGPQQERLRQQLSRRDHL 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A+ +F LK+A K Y D+RG+ +E F+LGYAPD L +HL+ Sbjct: 118 HRALALASGWFRSQLKSASGKEALAYLRDQRGLSEATMETFELGYAPDQWDGLLKHLQHV 177 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S E + AGL++ YDRFR R+I PIR +G+VI FGGR+L + KYLN Sbjct: 178 EGLSPELLESAGLVVPRKGGNGFYDRFRGRVIVPIRDRQGRVIGFGGRSLDGSDP-KYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AGV N V Sbjct: 237 SPETEVFEKGKHLFGLDQAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 286 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI V + G + + Sbjct: 287 ASLGTALSGQQITQLCRCSDGKRIVLNFDADRAGIRAANRAIGEVEQLALQGQLELRVLH 346 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G+DPD +++ +G + L+ ++ +D ++ E R D+ + L + Sbjct: 347 TPSGKDPDEYLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLTKADQFQQAVSGLVELL 406 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R + R + + Sbjct: 407 GKLPQSAIRTHYLQQVAERLSGGQGRLALQLEQDLRQQVQGQRWHGRSARHE-------- 458 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529 K + EA +L ++ P + EL + + LWS + E+ Sbjct: 459 KAGEVSQRERCEAEILRIYLHCPIHRSQVRCELRQRELEDFALQHHRLLWSAITDL--EE 516 Query: 530 KYFLPEEIHQ---------RLCERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVR-- 575 + L + LL L+ A L A + + Sbjct: 517 GNIGSGRLEAISRGKDPGHELADLDLPRLLTDQLLLENSALVARLTPLLEPAELQRLALA 576 Query: 576 ---------QGYQQALALYKRFRLL-----SRQKEEIEKQIAQVTAKGEAE--------- 612 + +KR R L S++ E +E+ IA + AK + + Sbjct: 577 RPMDVLRGTAAILERQKSHKRCRHLLEAWGSQRLETLERCIASLIAKEQEQTESAGGEDM 636 Query: 613 --KTAILISILHEVHIQIHQIESQE 635 + + L+ +++ ++ E Sbjct: 637 EGRIQEMFEQLNADALRLQELYYSE 661 >gi|326403200|ref|YP_004283281.1| DNA primase [Acidiphilium multivorum AIU301] gi|325050061|dbj|BAJ80399.1| DNA primase [Acidiphilium multivorum AIU301] Length = 609 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 191/639 (29%), Positives = 290/639 (45%), Gaps = 33/639 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L P++ L+ + V +R + CCPFH+EK+PSF+ D Sbjct: 1 MSLPPHFLDELRHRTPLAPLVARRVRLERAGRDQ-----KGCCPFHNEKSPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C GD +SF+ G SFIE+V+RLAA AG+ +P P + K + +L + Sbjct: 55 -YHCFGCGAHGDAISFVMQSEGASFIEAVERLAAEAGLEVPKPSPAAAEAAKREAELADV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A + L + YL RG+D+ I F LG++ + R SLR L ++G +E Sbjct: 114 LEAAAAEYRRRLALPEGEAARAYLAARGLDAPTIARFGLGWSGEGRGSLRAALARQGIAE 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++EAGL+ + D F R++FPIR G++++FGGR L KYLN PET Sbjct: 174 SRLVEAGLMKQ--GERGAVDYFYGRVMFPIRDRAGRMVSFGGRLL-GDGQPKYLNGPETA 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K + LY A ++ + + +I+VEGYMDV++L AG + V+ LGT Sbjct: 231 LFSKRRTLYGIDTARPAIR----------AGAALIVVEGYMDVIALAAAGFEGAVAPLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE L LW+LSPR +LC DGD G RAA +AI+L L L P + + L +DPD Sbjct: 281 ALTESHLEELWRLSPRPILCLDGDAAGRRAALRAIELALKQLTPDRGLAVLTLPGADDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SFIR G AF + L D L+ E+ TP+ RA L L+ I+D+ L Sbjct: 341 SFIRREGAAAFAARLAAVPSLADTLYLLLAESADQATPEGRAALRHRLEEVARTIEDKAL 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y A+ DR + GR + A R G R + S Sbjct: 401 AGEYRGALLDRFFAARRGRQAAGRAPGRAPDR-ASGRAPAGAPPRPLGLPRPSIDPSVAR 459 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 R L LI HP +L + + + + +L + + + + Sbjct: 460 LRRARMLTGLLIAHPDLLPALEEAFGLLALPD-DCARLRAAMSVWLATAEALDSALLLNH 518 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + G E + + + + + L +Q EE + Sbjct: 519 LAQSGLREAAE----LALSVLPRRGRGKETAGEALESLWYGIYGLMNLDWLRQQCEE--Q 572 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +I E + T + L + ++ E EA +E Sbjct: 573 RIR-----FEQDPTPENNNRLRALVEARYRAERGEADLE 606 >gi|118617124|ref|YP_905456.1| DNA primase [Mycobacterium ulcerans Agy99] gi|118569234|gb|ABL03985.1| DNA primase DnaG [Mycobacterium ulcerans Agy99] Length = 656 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 142/654 (21%), Positives = 253/654 (38%), Gaps = 46/654 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G YV R CPFH+EK+PSFH + G Sbjct: 20 RISDRDIAAIREGARIEDVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 75 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ LI Sbjct: 76 FHCFGCGEGGDVYAFVQKIEHVSFVEAVELLADRIGHTISYTGAATSVQRDRGSRSRLIA 135 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D+ A F G+AP SL +HL++KGF Sbjct: 136 ANAAAAAFYAEALESPEAALARKYLTERSFDAAAAHHFGCGFAPSGWDSLTKHLQRKGFE 195 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+P Sbjct: 196 FKELEAAGLSRQ--GRRGPIDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMDAKYVNTP 253 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K L+ A + + ++VEGY DV+++ AGV V+S Sbjct: 254 ETLLYKKSSVLFGIDLAKRDIAR----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 303 Query: 298 LGTALTEYQLRLLWKLSP-------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 GTA + L +L +L ++ FDGD+ G AA KA D + Sbjct: 304 CGTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDEAGRAAALKAFDGEQNLAG---QSFV 360 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G DP G TA L+ PL + + + + R Sbjct: 361 AVAPDGMDPCDLRLASGDTALRDLVARRTPLFEFAIRTALAESDLESAEGRVGALRRCVP 420 Query: 411 CINHIKDQKLRYYYSQAIRDRLQ-----QLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + IKD LR Y++ + + Q+ + E R + A + + + Sbjct: 421 MVGQIKDPTLRDEYARQLAGWVGWDDVAQVIDRVRGEAKNATRPNRGGAATKTPRRVAHE 480 Query: 466 LM-----QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + + + L + + +PA+ + L + + + + Sbjct: 481 STDTGSAEPAAARPDPRDPTLWPQREALKSALQYPALTGPVFDTLTVESFTHPGYAAVRA 540 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + ++ L L ++ + + Y Sbjct: 541 AIDAAGGTATGVTGAQWMDMVRQQTTSPLTSGLISELTVETIQVDEEKLP------RYIG 594 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 595 GVLARLQEVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 648 >gi|251796254|ref|YP_003010985.1| DNA primase [Paenibacillus sp. JDR-2] gi|247543880|gb|ACT00899.1| DNA primase [Paenibacillus sp. JDR-2] Length = 612 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 160/637 (25%), Positives = 276/637 (43%), Gaps = 41/637 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I+ + H I + + +YV + CPFH EKTPSF Sbjct: 5 KIPDDVIEAVRRHHDIVDTVSKYVHLSKNGK-----YMKGLCPFHSEKTPSFTVTPELQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118 ++C+ C G+ + F+ + +F E+V+ LA AG+P+ +P K + ++ ++ Sbjct: 60 FHCYGCGKTGNVIRFVEEIESYTFPEAVRVLAEEAGIPVTWANPDGSKPTAADTERSAVL 119 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 E+ +++ L N + YL +RG+ I F +GYAP+ +L L + Sbjct: 120 EAHELTAKLYNYLLNNTQHGRAAKDYLRDRGLGDKLINHFMIGYAPEQWDTLSRFLTARN 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F + + GLL + + DRFR R++FPI G+V AF GR + +G+ KYLNSP Sbjct: 180 FDSSLMEKGGLLSAKSDGSGYVDRFRGRIMFPIWDRDGKVTAFAGRIIGEGQP-KYLNSP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+LF K + +YN A ++KS ++L EGYMDV+ AGV+N +++ Sbjct: 239 ETMLFTKSRTIYNLHHARPAIRKS----------KQVVLFEGYMDVIKSWSAGVKNGIAT 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE +L + + IV+C+DGDD G AA K+I + G RV +L +G+ Sbjct: 289 MGTALTEEHCSILARQAEEIVICYDGDDAGQAAAMKSIPM---LEGAGLRVMVAMLPKGK 345 Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +I YG + ++I + + +N + R + + + Sbjct: 346 DPDEYITEYGPDDYLREVIDQPVTTTKFKLIYSRKNHILLKEEGRKNYLLEAAGIVAELD 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---- 472 R Y Q + + + + +K RD S ++ Sbjct: 406 SAIEREVYLQELSREFNFPLEVLKQDCHIKHQELQKKKPGRDNNDNSWNNGRNENRRRSG 465 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L + E LL ++ + Q +++L D ++ + L ++L++ + + Sbjct: 466 PPVLMPAYTYVERRLLHVMMRDRDVAQTVHEKLGD-AFNIEDHAALAAYLYAFYAQGYDP 524 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 L + + D A EA+I D+ + RFR + Sbjct: 525 DAGRFIASLQDERLERTAAAILMMDGDFPFDDAILEADIQDIIKV--------PRFREID 576 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R+KEE + Q G+ A ++S + + Q+ Sbjct: 577 RKKEE----MMQAERAGDHLLAAQMLSEIITLERQLK 609 >gi|328954515|ref|YP_004371849.1| DNA primase [Desulfobacca acetoxidans DSM 11109] gi|328454839|gb|AEB10668.1| DNA primase [Desulfobacca acetoxidans DSM 11109] Length = 606 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 169/638 (26%), Positives = 273/638 (42%), Gaps = 59/638 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + ++ PI+ +IGQYV R CPFH EKTPSF + + Sbjct: 5 IPEAKLLEIKEAAPIAEVIGQYVSLKPRGR-----YLVGLCPFHAEKTPSFTVYPERNIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLIR 119 +C+ C V G+ +FL L +F E+ LA G+PL + P + + + L Sbjct: 60 HCYGCGVGGNVFTFLMQHLRLTFPEAATELAKKYGIPLNLKKDLTPAEARASRQRQALYE 119 Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A FF +L + K + YL RG+ F+LG+APD L L ++G Sbjct: 120 VNELAAKFFTENLGHPHLGKPVREYLARRGLPEGVAASFRLGFAPDDWRLLIRALSERGA 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S E + GL I +S+ YDRFR RLIFPI +G+VIAFGGR + KYLNSPE Sbjct: 180 SLEAAQQLGL-IVPHHSSGHYDRFRGRLIFPILDLQGRVIAFGGRII-ADGEPKYLNSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + L+ KG+NLY F A ++K + ILVEGYMD+L+L ++ VV++L Sbjct: 238 SSLYSKGRNLYGLFQAREAIRKQ----------NLAILVEGYMDLLALRARNIEPVVATL 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q+RLL + R VL FDGD+ GL+A +++ V ++L GED Sbjct: 288 GTALTREQVRLLKGYTSRAVLVFDGDEAGLKAMRRSLPHFAGEH---LPVRVLVLPPGED 344 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS+ G F E+ PL + + T N + +++ L+ D Sbjct: 345 PDSYAAKQGVEIFRNPWEEAKPLFEYILDDATRNI-GDELEKKLAALETLRPYFQSDVDP 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + + RL + + Sbjct: 404 VEKALWLRLTAKRLTVSESALEESLANK--------------------RPALSAPMVCQA 443 Query: 479 KPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E +L+ ++ +P IL + + L + + +LQ + + + + Y Sbjct: 444 TALNLERSLIKFILANPEILPRLDVEEYLEQ--FTDIKLQTIARQICNCHRQLGYLDHSL 501 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +L + + L S E + + + R R L RQ++ Sbjct: 502 LVTQLDDDDLCRQVCSL----------SLAAEEYPPNHLELLIEDYRRSFRKRQLKRQQK 551 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ ++ +V L++ + E+ ++ +ES Sbjct: 552 KLRLELQEVYQARNGGDFLALVAQVREIEQRLRDLESS 589 >gi|256850359|ref|ZP_05555787.1| DNA primase [Lactobacillus crispatus MV-1A-US] gi|256712756|gb|EEU27749.1| DNA primase [Lactobacillus crispatus MV-1A-US] Length = 609 Score = 349 bits (894), Expect = 1e-93, Method: Composition-based stats. Identities = 156/639 (24%), Positives = 283/639 (44%), Gaps = 49/639 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N K F Sbjct: 7 RIPEDFISEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNADKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+R+A A + +P + L+++ Sbjct: 62 FKCFGCGKGGNVFKFLMYKDDLTFPESVERVAEFAHIAMP--NGYGHNSGTKLNPLMQMH 119 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +D ++ FK+GYAP + L +LR KG+ + Sbjct: 120 QDAVDFYHRVLLTTKAGERGMQYAQKRELDQEILDHFKIGYAPKADNVLITYLRSKGYQD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + YDRFR+RL+FP+ + G+ I F GR +S ++ KY+NSPET Sbjct: 180 DDLAQSGLFVQARDG-QLYDRFRDRLMFPLDNENGRTIGFSGRRISDDKTEAKYMNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + ++L EGYMDV++ +AGV++ ++S+G Sbjct: 239 GIFTKSKVLFHFAEAKKAAR----------GEGHLVLYEGYMDVIAAYKAGVKSGIASMG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ LL +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 289 TSLTDDQIYLLRRITPNIIINYDGDDPGVHAEERAARMFNKDGNFNLGI--VVLPEKLDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + + +L D KR + + + E+ I +++ Sbjct: 347 DEYVKKYGAEKYLEEVKGALTPTDFFLKRLEQKYNLDNDREKIAYLGEAVKEIAQVRNPV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRLMQS 469 + Y++ + + R ++N+ P Sbjct: 407 EQDMYTEKLAKSSGVSIASLKANLAKERRRNNRARNHVRNSQRNSPDYPIDVPLPGDEDV 466 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + K PS + LL I+ + + + N + + L Sbjct: 467 PTEQSVVEKNPS--QTRLLYLFIHSTDAQKYMLE--GQFHFPNQDFETLAQDWLKYAETH 522 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + E+ L + DA + ++ I +V AL L + R Sbjct: 523 ENPQIDGFLDFIPEQ--------LQGIIVDAEMAQMPKDSTIQEV-----DALVLALKRR 569 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E++ Q+ K +A+ + + + + Sbjct: 570 NIYSRLNELQAQLQDAKRKNDAQGIIAITQEIIGLKRIL 608 >gi|148259872|ref|YP_001233999.1| DNA primase [Acidiphilium cryptum JF-5] gi|146401553|gb|ABQ30080.1| DNA primase [Acidiphilium cryptum JF-5] Length = 609 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 191/639 (29%), Positives = 290/639 (45%), Gaps = 33/639 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P F+ +L P++ L+ + V +R + CCPFH+EK+PSF+ D Sbjct: 1 MSLPPHFLDELRHRTPLAPLVARRVRLERAGRDQ-----KGCCPFHNEKSPSFYVYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C GD +SF+ G SFIE+V+RLAA AG+ +P P + K + +L + Sbjct: 55 -YHCFGCGAHGDAISFVMQSEGASFIEAVERLAAEAGLEVPKPSPAAAEAAKREAELADV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A + L + YL RG+D+ I F LG++ + R SLR L ++G +E Sbjct: 114 LEAAAAEYRRRLALPEGEAARAYLAARGLDAPTIARFGLGWSGEGRGSLRAALARQGIAE 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++EAGL+ + D F R++FPIR G++++FGGR L KYLN PET Sbjct: 174 SRLVEAGLMKQ--GERGAVDYFYGRVMFPIRDRAGRMVSFGGRLL-GDGQPKYLNGPETA 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K + LY A ++ + + +I+VEGYMDV++L AG + V+ LGT Sbjct: 231 LFSKRRTLYGIDTARPAIR----------AGAALIVVEGYMDVIALAAAGFEGAVAPLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE L LW+LSPR +LC DGD G RAA +AI+L L L P + + L +DPD Sbjct: 281 ALTESHLEELWRLSPRPILCLDGDAAGRRAALRAIELALKQLTPDRGLAVLTLPGADDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SFIR G AF + L D L+ E+ TP+ RA L L+ I+D+ L Sbjct: 341 SFIRREGAAAFAARLAAVPSLADTLYLLLAESADQATPEGRAALRHRLEEVARTIEDKAL 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y A+ DR + GR + A R G R + S Sbjct: 401 AGEYRGALLDRFFAARRGRQAAGRAPGRAPDR-ASGRAPAGAPPRPLGLPRPSIDPSVAR 459 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 R L LI HP +L + + + + +L + + + + Sbjct: 460 LRRARMLTGILIAHPDLLPALEEAFGLLALPD-DCARLRAAMSVWLATAEALDSALLLNH 518 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + G E + + + + + L +Q EE + Sbjct: 519 LAQSGLREAAE----LALSVLPRRGRGKETAGEALESLWYGIYGLMNLDWLRQQCEE--Q 572 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +I E + T + L + ++ E EA +E Sbjct: 573 RIR-----FEQDPTPENNNRLRALVEARYRAERGEADLE 606 >gi|326791439|ref|YP_004309260.1| DNA primase [Clostridium lentocellum DSM 5427] gi|326542203|gb|ADZ84062.1| DNA primase [Clostridium lentocellum DSM 5427] Length = 587 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 161/612 (26%), Positives = 274/612 (44%), Gaps = 34/612 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP I+++ I ++I +Y ++ Y CPFH EKTPSF ++ K Sbjct: 1 MRYPEHVIEEVREKSDIVSIISEYTALTKKG-----HSYTGLCPFHSEKTPSFSVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ ++FL +FIE+++ LA + L + +K K + L+ Sbjct: 56 LYYCFGCGAGGNVITFLMQKESMTFIETIKYLAERENIKLDETYLSEEEVEKNKKRQHLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +++ + FFH+ L+ + K YL +RG+ I+ F LGYA L E+L+QKG+ Sbjct: 116 EILKESARFFHYQLRQEQHKSALTYLTDRGLSLETIKQFGLGYASPQFNELYEYLKQKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E ++E+GL + NS YDRF +R+IFPI +VIAFGGR L G KYLNSPE Sbjct: 176 SDELLLESGLFLSSKNSQMPYDRFADRIIFPIFDLSKKVIAFGGRVL-DGSLPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 +LF+K + LY A +SSS+ ILVEGYMDV+++ QAG ++SL Sbjct: 235 NLLFNKSRVLYGLHLAK------------TSSSSYFILVEGYMDVIAMHQAGFNQTIASL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T +L+ + +V+ +D D G +AA +AI + G +V + L G+D Sbjct: 283 GTAFTPGHAKLIKRHVKEVVILYDSDGAGQKAALRAIPI---LRNEGIKVKVLQLKEGKD 339 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F++ +G A +KLI E+ + + + P+E+ + + + Sbjct: 340 PDEFLKTHGYEAMKKLIEEAPVDIWFQVLHVEKKYQLSNPEEKVKFLQEIATILAESSSS 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y I + Q + E + + K R + ++ PS Q Sbjct: 400 IEQAIYIGEICSKYQIDEAAFKAEMNQHQGQILKRVREKAKEPPSMMQKQQLFNN----- 454 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L TL ++P + + + + + L L + + Sbjct: 455 -----EVIFLATLYHYPQLGRHILKYIKPEMFQEELLYDLAKAIMENLEMGDEVDLNYFT 509 Query: 539 QRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E ++ L + + + +V++ + + + ++ + Sbjct: 510 TKYPEVNEQNIISHVLIYKDQRYEDMEILQKMMTENVKRLNKTYIEKRLKQTTDIKEVQN 569 Query: 598 IEKQIAQVTAKG 609 + Q ++ Sbjct: 570 LLFQKKELDKLN 581 >gi|157374212|ref|YP_001472812.1| DNA primase [Shewanella sediminis HAW-EB3] gi|157316586|gb|ABV35684.1| DNA primase [Shewanella sediminis HAW-EB3] Length = 573 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 175/625 (28%), Positives = 296/625 (47%), Gaps = 56/625 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARIDIVDLIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA GV +P K+++ + DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEDLAGQLGVEVPREQGTGPKRDEGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ +F + L+ DK+ YL RG+ + +E F +G+APD L RQ Sbjct: 116 LMEEASLYFQNQLRQHNDKQKVLEYLTHRGLSNEVVEHFNIGFAPDGWDGLLSRYRQNQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ AG++I+ DN YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTAGMVIENDNG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + +++VEGYMDV++L Q GV V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDP----------KQVLIVEGYMDVVALAQFGVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G+ AA++A++ L L PGN+V F+ L GED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGVEAAWRALETALPLLKPGNQVKFMFLPEGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK FE + ++ L + L++ + ++ L I+D Sbjct: 344 PDTMVRQVGKEVFESQVNDAQELPEFLFETLAKRY----GSDKGTLAKQAITLTEKIQDT 399 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ +++ +L ++ + + K + + KG L Sbjct: 400 VLQSLLLESLAYKLGMNSAEELKRKLGFSSKEQVKPLQKKALKGRGTPL----------- 448 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP++ + ++ L+ L + ++ Sbjct: 449 -------RLAIALLVQHPSLGEGLPEQ--------PALKHLKMAGIELLILLLDETRVKV 493 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E + + L + +++Q +++ L ++ + + ++ +E Sbjct: 494 KH---SAQLLEQFRGDKQLSTLKKLTQWDHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549 Query: 598 IEKQIAQVTAKGEAEKTAILISILH 622 + + Q K E + LIS++ Sbjct: 550 L--SLKQNHTKEERIQLTKLISVIK 572 >gi|78188526|ref|YP_378864.1| DNA primase [Chlorobium chlorochromatii CaD3] gi|78170725|gb|ABB27821.1| DNA primase [Chlorobium chlorochromatii CaD3] Length = 660 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 171/660 (25%), Positives = 275/660 (41%), Gaps = 50/660 (7%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P I ++ I +++ YV N Y A PF EKTPSF + K Sbjct: 1 MSMIPPAIIDEVRQAADIVDVVSDYVALQPSGRN-----YKALSPFTQEKTPSFIVSPDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLI 118 Y CFS G+ SF+ + F+E+++ +A AG+ + +PK +++ + + Sbjct: 56 QIYKCFSTGKAGNVFSFIMEMEKVPFMEALKLVAQRAGIDISRYTEPKGKQEGEEEQGSG 115 Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A FH LK Y+++ERG+ I F LGYAP+S L R++G Sbjct: 116 AALRWAARMFHSLLKQPAGAEGWRYFVEERGLREETINRFGLGYAPESWDFLLREARREG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 E+++E GLL+ + YD FR+R+IFPI S GQV+ FGGR L E KYLNS Sbjct: 176 IKSEQLVELGLLVSHREKQSLYDSFRHRVIFPIFSRGGQVVGFGGRALVSDERSPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F K K LY A N +++ R ILVEGYMDVL+L QAG+ N V+ Sbjct: 236 PESAMFAKSKLLYGLHFAKNEIRRQERA----------ILVEGYMDVLALHQAGLTNAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALT YQ ++L S ++ +D D G ++ ID+++ ++L G Sbjct: 286 SCGTALTRYQAKMLRHYSEHVLFVYDADKAGQKSMMSGIDILVSEQ---MVPQVLMLPEG 342 Query: 357 EDPDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPDSF+R G+ F + ++ D +F+TP+++AE + I I Sbjct: 343 DDPDSFVRREGRQGFLQYAESHTMGFQDFQLAFFEAAGAFSTPEQKAEALRVMVRTIALI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS----- 470 + R Y+Q + ++ K K + SS Sbjct: 403 PKRAQRELYAQELSKKVGLTVTALRELLGNATSAVAKQQSCTPSKASATAPTSSSATNAT 462 Query: 471 ----------LVKGKLSKKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQ 516 L + S+ E L L+ +L + + + Q Sbjct: 463 SAPTIPHAPNLPNAQALPPLSVLEKTFLKALLESTQYGTAVLGFAASHQSMLELRHPLAQ 522 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEAN 570 ++++ L + PE + E +L L + W + Sbjct: 523 EIFAHLIHRYH-NIAADPEATIDMVSEISAFTNPETRDLASTLLLDPPISPKWQQQNDLF 581 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R+ L +K +L +E K + Q+ + E+ L + +I + Sbjct: 582 SEQARRCLAMFLDAFKNL-VLEPLLDEKNKLMEQIRVEENVEREIELSRQKIVLDKKIRE 640 >gi|329667248|gb|AEB93196.1| DNA primase [Lactobacillus johnsonii DPC 6026] Length = 603 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 278/634 (43%), Gaps = 44/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPEGYGETVKPLSPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 AT+F+ H L + +R Y +R + S +E FK+GYAPD+ L +LRQ+G+++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDAILLTYLRQEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 +++ E+GL ++ + +DRFR+RL+FP+ G + F GR +S +++ KY+NSPET Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + S +IL EGYMDV++ +AG+++ V+S+G Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIKSGVASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L DP Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + +L +D L +R + + E+ I + D Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSMDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + + R ++ H+ + L + K + Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDRPSEPKEEQA 462 Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E LL I+ + + + KL F + Sbjct: 463 GTDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E +L + + + S + + ++ + + + Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRALEKSK-----IDQ 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ K + + + + + Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601 >gi|254556821|ref|YP_003063238.1| DNA primase DnaG [Lactobacillus plantarum JDM1] gi|254045748|gb|ACT62541.1| DNA primase DnaG [Lactobacillus plantarum JDM1] Length = 626 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 142/651 (21%), Positives = 268/651 (41%), Gaps = 50/651 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + + I++ IGQYV + N + CPFH+E+TPSF N+ K Sbjct: 4 RIPEEKVEQVRSAVNIADFIGQYVQLKKAGKNL-----FGLCPFHEERTPSFSVNEQKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CFSC G+ SF+ L SF E+V ++A + LP K++ Q DL Sbjct: 59 FHCFSCGRGGNVFSFIMDLENLSFPEAVVKVADFGHIDLPASYTAQSQPAAPKDQQQADL 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++L + + H L + YL ERG+D I+ F +GYAP + L + ++ Sbjct: 119 LKLYADSAKMYQHILVNTELGEPALKYLHERGLDDETIKTFGIGYAPAN-QLLLDFFKEH 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 + + ++GL I+ DRF +R++FPI+ + G+VIAF GR L K KYLN Sbjct: 178 QTDYQLLRQSGLFIENQAGD-LRDRFVDRVLFPIKDASGRVIAFSGRILKKSPNEPKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+K L+NF A ++ ++L EG+MDV++ ++G+QN V Sbjct: 237 SPETKLFNKRSVLFNFDLARGPIR----------QQKSVVLFEGFMDVIAAYRSGIQNGV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LT+ Q+ +L +++ + +C+D D PG +A +A+ L+ + V + + Sbjct: 287 ASMGTSLTDEQIYMLERVTDTLYVCYDSDMPGQKATDRALKLLGGNSRLNLGV--IQMPD 344 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R G+ F + + + + ++ + + Sbjct: 345 GMDPDEYLRAQGQEKFVQVFEDGKQTPTAFEMQYLKHDLNLQNTPDQLTYLQAVLQQLAQ 404 Query: 415 IKDQKLRYYYS-----------QAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGP 462 + + Y ++ +L+ L + G + Sbjct: 405 LSSSVEQDLYLNQLVAEFDLDKDDLKQQLRSLVGQQAVRRGGGHSDETQVAPPPAPAPLG 464 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + E LL L+N + +A + ++ Q++ + Sbjct: 465 PPPATVDGSTNSGPLSRVEKAERLLLYRLLNDHDVWLRVM-AIAGFHFVHDSYQQILVYA 523 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + F F + + ++ L+ + ++ + Sbjct: 524 EAYFKTHNQFDLGNFTDFMTDSDLQPVVTSLE-----------FMDVANESSKEEIADLV 572 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + L Q + ++ G + L L +++ Q Q++ Sbjct: 573 NVIMNQQPLVEQINSKKAELTAAKQIGNRDLVQQLTLALIDLYRQQQQVQR 623 >gi|121997891|ref|YP_001002678.1| DNA primase [Halorhodospira halophila SL1] gi|121589296|gb|ABM61876.1| DNA primase [Halorhodospira halophila SL1] Length = 614 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 171/636 (26%), Positives = 283/636 (44%), Gaps = 49/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI ++L I ++G+ V +N Y A CPFHDE+TPSF+ + + Sbjct: 4 RIPDEFIDEVLQRTDIVAVVGERVPLRPGGSN-----YKARCPFHDERTPSFNVSPERQT 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G + FL F E+++ LA G+ +P + L R + Sbjct: 59 YHCFGCGAHGTAIRFLMEHDRMEFREAIEELANRVGLEIP-DTGGARRPADEFAPLYRAM 117 Query: 122 EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF +L+N ++ YL +RGI F LG+AP +L ++ Sbjct: 118 AHADQFFRDALRNHPARQSAVEYLRQRGISGEVAARFGLGFAPPGWDNLL----RQLNDP 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I AGL+I+ +YDRFR+R+ FPI RG+V+AFG R +S+GE KYLNSPET Sbjct: 174 RPAIRAGLVIE--RDQKTYDRFRDRITFPIHDRRGRVVAFGARVVSEGEP-KYLNSPETP 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+ +Y + AL ++ R +I+VEGYMDV++L Q G+ V++LGT Sbjct: 231 IFHKGREVYGLYQALQAERRPGR----------LIVVEGYMDVIALTQQGIPGAVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T Q LL + + +VLCFDGDD G AA +A++ +L L V +LL G DPD Sbjct: 281 ATTAEQATLLLRSADELVLCFDGDDAGRSAALRAVENLLPVLQGDREVGVLLLPEGTDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R G+ AFE + + P+++ R E T D RA L + + + Sbjct: 341 DLVRSEGREAFENRLATATPVIEFYLARLGEACDLTTVDGRARLLERASGSLRRLPRGVI 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + + + GR Q + R ++SL + + Sbjct: 401 RETLIGQLAELTR--TEPERIDRILEGRAETPRDDPAPQGRSAPRTPEASLQRTPV---- 454 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIH 538 + L+ P + R+ + + +L L + I Sbjct: 455 ----RHAIALLLQQPQLATHAGD---PDRFADRDTPGLELLQQLLELARTEPNMTTARIL 507 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +R + L +L R A D +Q +Q AL + +++ +++ + Sbjct: 508 ERFRDTPHEAPLHRLAAWQRTA--------MAEGDHQQEFQDAL-MRIEEQIIHNEQKRL 558 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIES 633 + + QV + ++ L+ + + + +++ Sbjct: 559 VRALDQVGQDDQTIDREQELLRQATRLQLLMDRLKR 594 >gi|307705134|ref|ZP_07642011.1| DNA primase [Streptococcus mitis SK597] gi|307621330|gb|EFO00390.1| DNA primase [Streptococcus mitis SK597] Length = 586 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 151/629 (24%), Positives = 262/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKPASPHQSLYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL ++ D F NR++FP+ + RG+VIAF GR K +S KY NS T Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDRGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P Q ++ K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D +D E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFTFDTPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEITRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|301066554|ref|YP_003788577.1| DNA primase [Lactobacillus casei str. Zhang] gi|300438961|gb|ADK18727.1| DNA primase (bacterial type) [Lactobacillus casei str. Zhang] Length = 595 Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats. Identities = 163/633 (25%), Positives = 268/633 (42%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+ K + Sbjct: 2 IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D FHH L N + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ S GQVI F GR LSK ++ KYLNSPET Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G AF+ + L + + N + I I + Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + D + A + P + + Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + QV TEA I ++ Q A + + + I++ Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595 >gi|332288975|ref|YP_004419827.1| DNA primase [Gallibacterium anatis UMN179] gi|330431871|gb|AEC16930.1| DNA primase [Gallibacterium anatis UMN179] Length = 596 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 162/640 (25%), Positives = 289/640 (45%), Gaps = 74/640 (11%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M PR FI +LL I ++I V + N Y ACCPFH+EKTPSF + Sbjct: 1 MKGLIPRTFIDELLARTNIVDIINSRVKLKKAGQN-----YQACCPFHNEKTPSFSVSPK 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEK 112 K FY+CF C G+ ++FL F+E+++ LA++ GV +P + + + Sbjct: 56 KQFYHCFGCGAHGNVITFLMEYDKMDFVEAIEELASLQGVEVPREESNGQYNTNNSANYR 115 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + DL +L+ F+ L + + YL +RG+ + I+ F +G++ ++ L Sbjct: 116 SKRDLHQLMHDIAQFYQQQLTQSLPAQA--YLQQRGLSAEIIQRFAIGFSTNTNSVLNHF 173 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + ++ + + YDRFR R++FPIR RG+ IAFGGR L E K Sbjct: 174 GKTAEERQKLVDTGMVTKSDYG--NFYDRFRQRIMFPIRDRRGRTIAFGGRVL-GDEKPK 230 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE +HKG LY + AL + ++ ++++VEGYMDV++L Q GV Sbjct: 231 YLNSPEMATYHKGNELYGLYEALQ----------QNDNPEYLLIVEGYMDVVALAQFGVT 280 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V+SLGTA T Q+++ ++ + +I+ C+DGD+ G AA++A++ L HL G ++ F+ Sbjct: 281 NAVASLGTATTGEQIQIAFRATEQIICCYDGDNAGRSAAWRALENALPHLYDGRQLKFIF 340 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L EDPD+FIR GK FE+ + + P+ D L++ + D R++L I Sbjct: 341 LPDNEDPDTFIRQIGKAQFEQFLNMAQPMSDFLFQHLLAQVDLSNKDGRSKLAALAVPLI 400 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 N + + LR Y + +L + + + K Sbjct: 401 NQVPGETLRLYLRNTLGQKLGIVDSIQLEKILPALISEHK-------------------A 441 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--------QKLWSFLFS 524 K K + S L+ L+ +P + + ++ I N ++ L+ ++ Sbjct: 442 KEKEERLRSTPMRLLIALLVQNPELADK---QITRILLSNPQVLYDLNLPGLALFLEIYQ 498 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + ++ + + ++L++L ++ + L Sbjct: 499 ICANKSGITTGQLLEFWRGKKEQKILEKLAMWDHLIK---------DDNIEATFYGNLK- 548 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + +++ ++ E ++ + + + +K L E+ Sbjct: 549 HLHSKVMEKRIETLKAKDRTDSLSLDEKK------ELIEL 582 >gi|149371560|ref|ZP_01890976.1| DNA primase [unidentified eubacterium SCB49] gi|149355187|gb|EDM43747.1| DNA primase [unidentified eubacterium SCB49] Length = 653 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 159/662 (24%), Positives = 262/662 (39%), Gaps = 60/662 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I ++ + +IG YV + +N + PF DE++PSF + K + Sbjct: 2 ISRTTIDNVFEAARVEEVIGDYVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 FS G+ ++FL ++ E+++ LA G+ + E+K + L + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYGIEIEETVQTDEQKVAADERESLYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D FHH+L N + Y ERG I+ F+LGY+ D + H +KG+ Sbjct: 117 SEFAKDHFHHNLLNTDLGKAIGLSYFKERGFTDETIKEFQLGYSIDDWDAFTSHAIKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI+S G+ + FGGR L + KYLNSP Sbjct: 177 KLDFLEKTGLSIV--KGEKQFDRFKGRVMFPIQSMSGRTLGFGGRILKTDKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ Q GV+NVVSS Sbjct: 235 ESDIYHKSKVLYGIYQAKQAIAK----------EDNCFLVEGYTDVIQFYQRGVKNVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD GLRA+ + +DL L G V GE Sbjct: 285 SGTALTSDQIRLINRLTKNITVLFDGDAAGLRASLRGVDL---ILEQGMNVRICTFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + E+ + N P ++AE + I I D Sbjct: 342 DPDSFAKNNTLEDLLLFLDENAKDFISFKASLLATDAKNDPLKKAETIRDMVESIAKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-RLMQSSLVKGKL 476 R Y Q + + + K+ + + P ++ S + K Sbjct: 402 VIKREVYIQECARIMDISEEVLFNTLAQILNKGKREDTRKKEDAPKPFDIVASPKKQSKK 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQEL------------------------------A 506 E ++ L+ + ++E L Sbjct: 462 VDVLWELERKIIELLLLYGDEVEEFEDLLLDTDETGAITLKPEKVNAKVFEKIFLDLQDD 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 ++ + N+E + ++ + + + +L + L + Sbjct: 522 EVEFANDEFKDVYYDIIQHLNQNQEVQLTSFLSQLEPEKSSAISSILMEDEKYVLHDWER 581 Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 E + QG Q + L R L+S++ E+ I + A + + I Sbjct: 582 MEIYVKKKEQGVSQLVSETILNLRRHLISQKITEL-STIVKENAATDTTEYLQSIMDYQS 640 Query: 624 VH 625 + Sbjct: 641 LK 642 >gi|332670810|ref|YP_004453818.1| DNA primase [Cellulomonas fimi ATCC 484] gi|332339848|gb|AEE46431.1| DNA primase [Cellulomonas fimi ATCC 484] Length = 672 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 146/687 (21%), Positives = 257/687 (37%), Gaps = 73/687 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 R+ ++ + I ++G +V G CPFHDE++PSFH G Sbjct: 4 RIRREDVEAVRERARIEEIVGAHVSLRPAG----VGSMKGLCPFHDERSPSFHVRPQVGR 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C GD ++F+ + G +F E+V+ LA G+ L + + + L+ Sbjct: 60 YHCFGCGEGGDVIAFVMKVDGLAFAEAVEYLAGRVGIQLRYEEGGAPRPGDEPGRRRRLL 119 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +VA +F+ L +L ERG D A E F +G+AP L HLR +GF Sbjct: 120 DAHKVAEEFYREQLTTPGAAAGRAFLAERGFDRSAAETFGVGFAPQGWDGLLRHLRGRGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 +E +++ +GL+ G YDRFR RL++PIR G+ + FG R L + KYLN+P Sbjct: 180 TEAELVASGLVSQGQR--GVYDRFRGRLVWPIREVTGETVGFGARRLFDEDQGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ K + LY A +Q+ R +++VEGY DV+++ +GV V++ Sbjct: 238 ETPLYRKSQVLYGIDLAKRDMQREKR----------VVVVEGYTDVMAMHLSGVGTAVAT 287 Query: 298 LGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339 GTA R++ + + I+ FDGD G +AA +A Sbjct: 288 CGTAFGSDHARIVRRLVGDSGSTGGVQLASGASVGGEIIFTFDGDAAGQKAALRAFGEDQ 347 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 + G DP + G A L+ PL + + + E+ T + Sbjct: 348 SFSAQ---TFVAVERSGLDPCELRQAKGPDAVRALVAGRQPLYEFVIRSTLESYDLRTAE 404 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 R + I+D LR Y++ + L Q + R + RD+ Sbjct: 405 GRVGALRAAAPVVAGIRDAALRPEYTRLLAGWLGIDDQDAVRRAVAGARSTGRPGGGRDE 464 Query: 460 KGPSQR------------------------------LMQSSLVKGKLSKKPSLREAALLL 489 P +R + + + + E L Sbjct: 465 GRPDERRGRPDDRRGGRADGRPDDRGAARGGPDVVHVPVARMPVPDRRDPVAQVERTALE 524 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 ++ P + + + +LA + + + + + + + Sbjct: 525 VVLQLPEHVPDHFDDLAADAFAAPAYRAVHEAVRAAGGVAAARAAVQAAPGASTAWVDAV 584 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQ--GYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++Q VR A GY + + L +R ++ ++ ++ Sbjct: 585 VEQAAEPVRALVTELAVAPLPEDRPESLPGYVRDVVLRLVEIGYTRHIADLRGRLQRMDP 644 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634 +A + L + + + Sbjct: 645 GADAAGYQAAFAELVALEGRRRTLRES 671 >gi|319762044|ref|YP_004125981.1| DNA primase [Alicycliphilus denitrificans BC] gi|330826138|ref|YP_004389441.1| DNA primase [Alicycliphilus denitrificans K601] gi|317116605|gb|ADU99093.1| DNA primase [Alicycliphilus denitrificans BC] gi|329311510|gb|AEB85925.1| DNA primase [Alicycliphilus denitrificans K601] Length = 641 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 171/675 (25%), Positives = 293/675 (43%), Gaps = 86/675 (12%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MSIPQSFIQELLARVDVVDIVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKI 113 F++CF C G+ + FL G F E+VQ LA G+ +P + + + + Sbjct: 56 FFHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQVGMQVPDDENTSPQDRERAAAQRQK 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 Q L ++E A + + L+ + R Y RG+ + + LGYAP+ +L Sbjct: 116 QATLTEVLEKAGESWRRHLRES--PRAIQYFKGRGVSGQVAKRYGLGYAPEGWRNLASVF 173 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 + + E+GL+I G++ YDRFR+R++FPIR+ +G+ I +GGR L + KY Sbjct: 174 --PEYDSPLLEESGLVIVGEDDGKRYDRFRDRVMFPIRNVKGECIGYGGRVL-GDDKPKY 230 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +FHKG+ LY + A ++ ++++ EGYMDV++L Q G N Sbjct: 231 LNSPETPVFHKGRELYGLYEARGAIR----------EMGYVLVAEGYMDVVALAQLGFPN 280 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA T + L++ + +V FDGD G RAA KA+D L + + F+ L Sbjct: 281 AVATLGTACTPDHVHKLFRFTDVVVFSFDGDAAGRRAARKALDGALPYASDTRSIKFLFL 340 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDSFIR +G AF + + +++PL L + E T + RA + + + + Sbjct: 341 PPEHDPDSFIRAHGPEAFARHVGDAMPLSRFLLESAREGCDLGTAEGRAHMLANARPLWS 400 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEH------------------------------ 443 + D L+ + L QL K + E Sbjct: 401 QLPDGALKRQMLAEL-GELGQLPAKDLAELWAQEGPRAAPAAAPEGGDPFADEPPWHPQP 459 Query: 444 ------SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 R W+K+A R ++ P+ R Q L + + + LL + Sbjct: 460 PGPWQGEPARRPWRKDAGGRWRREPA-RPAQPPLPRRPAASRIDHAARLLLSHM----QF 514 Query: 498 LQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 L+ E E L+++L E + + L L +++ Sbjct: 515 LEGLSHEDHAALCAQPEPHGPLFAWLEGQLHEHGPQPWAVLREALRGHDCEPLAERVMTG 574 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 A TE + ++ + L RQ++E+ ++ + A Sbjct: 575 S------HAQTEGDEAELHAELRGLLDRMLIEEF-KRQQQELVPRVTRDPAA-------- 619 Query: 617 LISILHEVHIQIHQI 631 ++ + ++ + Sbjct: 620 -LAQYQALEQRLKGL 633 >gi|148239409|ref|YP_001224796.1| DNA primase [Synechococcus sp. WH 7803] gi|147847948|emb|CAK23499.1| DNA primase [Synechococcus sp. WH 7803] Length = 693 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 172/677 (25%), Positives = 294/677 (43%), Gaps = 69/677 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF E V LA +P+ VD +++ K + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSEVVLDLARRYQLPVETVDGPQQERLKQQLSRRDTL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R++ +A +F LK A Y D+RG+ +E F+LGYAPD L +HL+Q Sbjct: 120 HRVLALAAGWFRSQLKVASGAEALRYLQDKRGLSDATLEQFELGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + + AGL++ YDRFR+R++ PI+ +G+VI FGGR+L E KYLN Sbjct: 180 EGLDPQHLEAAGLVVPRKGGNGFYDRFRHRVMVPIKDRQGRVIGFGGRSLDGTEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A + ++K R ++VEGY DV++L AGV N V Sbjct: 239 SPETEVFEKGKHLFGLDRAASAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRCCDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ E R + D+ L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLSKADQFQRSVSALVELL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R + R + + Sbjct: 409 GKLPQSAIRTHYIQQVSERLSGGQGRLALQLEEDLRQQVQGQRWHGRSARHE-------- 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLW---------- 519 K + + EA +L ++ P+ QEL + + LW Sbjct: 461 KSGEASQRERCEAEILRLYLHCPSYRGAIRQELRKRELEDFALQHHRLLWSCLTELEEGN 520 Query: 520 ------SFLFSDFVEQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 + ++ + L ++ L+ +L + L Sbjct: 521 LGSVRLEAISRGDDRGDELADLDLPRLLTDQLLLENSTLVTRLTPLLEPGELQKVALSRP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +R + KR R L ++ + +E+ IA + + ++ + Sbjct: 581 MEQLRGTAAMLERQKSNKRCRHLLEAWAGQRLQTLERCIAVLIDEEREQQQPQT----ED 636 Query: 624 VHIQIHQI---ESQEAM 637 + +I + + EA+ Sbjct: 637 MEQRIQAMFDDLNAEAL 653 >gi|300743946|ref|ZP_07072966.1| DNA primase [Rothia dentocariosa M567] gi|300380307|gb|EFJ76870.1| DNA primase [Rothia dentocariosa M567] Length = 676 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 155/694 (22%), Positives = 279/694 (40%), Gaps = 90/694 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ I ++ YV G Y CPFHDE+TPSF+ G Y Sbjct: 5 IRKEDIDEVRARTDIREIVEGYVTLKGAG----IGAYKGLCPFHDERTPSFNVRPQMGTY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD SF+ A+ F E+V+RLAA G L +P+ + ++ L+ Sbjct: 61 HCFGCGESGDVYSFVMAMEHTGFTETVERLAARIGYTLHYEGGNPRDRYEASLRRRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ +FF SL +A +L RG D A + F +GYAP +L +HLR +GF++ Sbjct: 121 HKITAEFFERSLYSANAGEAQRFLGARGFDPAATKTFGVGYAPRGWDNLLKHLRSQGFTD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E++ G+ +G+ YDRFR R+I+PIR+ G+ I FG R L + KYLN+PET Sbjct: 181 EELRATGMFSEGNR--GLYDRFRGRIIWPIRTVAGETIGFGARRLFDDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K + +++VEGY DV++ AG++ V++ G Sbjct: 239 PLYKKSQVLYGIDLAKREMTK----------TKQVVIVEGYTDVMAAHLAGIKTAVATCG 288 Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 TA ++++ ++ I+ FDGD G +AA A + + + + Sbjct: 289 TAFGAGHIKVVRRMITDDGSGGEIIFTFDGDAAGQKAALAAFEEDQRFVA---QTYVAVA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A LI PL + + + T + R + I Sbjct: 346 QEGMDPCDLRLHRGDAAVRSLIASRRPLFEFVIDTTLKRFDLTTLEGRVLAMRAIAPIIA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------ 455 I+D+ LR Y + + +L ++ + R+ ++ R Sbjct: 406 GIRDRDLRPAYMRKVSGQLGMELEEIQRAVAYAQRHPQQKKRYEPVAQQSQTPRYEQVPG 465 Query: 456 --------------HRDQKGPSQRLMQSSLV-----------------------KGKLSK 478 + P+ + + S + Sbjct: 466 YGQQDLQNYSAQPWNASAGNPAPQTERPSNPGNTMPDTHSDTSVANTGGGEPILAPDPAD 525 Query: 479 KPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E A L + HP ++ Q+QE A + + +++ + E Sbjct: 526 PVARLEKAALEIALQHPHLMSVSQWQEFARVEFRYRMHREISRGIIHAASTVAPAAGVEW 585 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E+ + +A A+ + + + L ++RQK + Sbjct: 586 LNVVRSGTIAEVHPAIAELSV-----AALPIAHEEHLPRFIEGTLNSLF-IHQITRQKSD 639 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ Q+++ ++E+ A + L E+ ++ + Sbjct: 640 LMMRLEQLSSASDSEEYAHVQRELLELEMRRRTL 673 >gi|310827636|ref|YP_003959993.1| DNA primase [Eubacterium limosum KIST612] gi|308739370|gb|ADO37030.1| DNA primase [Eubacterium limosum KIST612] Length = 591 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 157/630 (24%), Positives = 286/630 (45%), Gaps = 55/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y + I +L I +++ +YV + + Y CPFH+EKT SF + K Sbjct: 14 RYSEEVINQVLQANDIVDVVSEYVTLKKAGS-----SYKGKCPFHNEKTASFTVSPDKQL 68 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C V G+ + F+ A+ F+++++ LA A + LP + ++ + + L Sbjct: 69 YHCFGCGVGGNVIGFVMAIENLPFVDALKFLARRAHIILPENGSSAEDSERYRKKERLYE 128 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L ++++ LK R+ + YYL R I I+ + LG APD + LRQKG++ Sbjct: 129 LHRELANYYYLCLKKNRNAQ--YYLAGRKITPETIKAYGLGLAPDGWQNALGFLRQKGYT 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 +++++++GL + + YDRFRNR++FPI ++ G++I FGGR +++ + KYLNSPE Sbjct: 187 DQEMLDSGL-VMRSENGRMYDRFRNRIMFPILNATGRIIGFGGRRINEDDHGPKYLNSPE 245 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F KG L+N A + + +++VEGYMDV+SL Q GV+N V++L Sbjct: 246 TMIFSKGTELFNMNHAKSSI-----------VGGQMLIVEGYMDVISLYQYGVRNTVAAL 294 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Y LL + +VLCFDGD G A KAI + V + L +D Sbjct: 295 GTAFTAYHAALLGRYVGEVVLCFDGDAAGESATQKAIAI---LKNTPLNVKILRLPIEDD 351 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD++I+ +GK AFEK I E++ +V+ + + D R + + + D+ Sbjct: 352 PDTYIQKHGKDAFEKKITEAITIVEYEIGLLRKKFDLSQTDGRIKYINQAIAVLRQLSDE 411 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 YS+ + + E R + + + + K+ K Sbjct: 412 VQIDLYSKRLARETGIDLKVIRREV----------YRKKPVDLTEEDVGEKIDYWQKMPK 461 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L + P + + L + ++L+ + + + P + Sbjct: 462 AYEEAQILFLRKGMMEPDVFKS--GRLRAEHFSPGFFRELYELITGLLEKGEQLSPAALM 519 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +++ + + T + + + + + + +EI Sbjct: 520 NHFED---------VEQVKPVSAILMDDTPIESAKLEECVKTIMHFH--------RLKEI 562 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E +I Q +K E+ A+L+ + + ++ Sbjct: 563 E-RIKQEISKASEEEAAVLMDKMITLKKEM 591 >gi|78212706|ref|YP_381485.1| DNA primase [Synechococcus sp. CC9605] gi|78197165|gb|ABB34930.1| DNA primase [Synechococcus sp. CC9605] Length = 682 Score = 348 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 163/638 (25%), Positives = 280/638 (43%), Gaps = 57/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F L YL E R + E F+LGYAPD L +HL+Q Sbjct: 120 QRALALAAGWFRSQLMAPAGAEALKYLSEARELSPATQETFQLGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + E + AGL++ YDRFR+R++ PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLAPELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI ++ + + + Sbjct: 289 ASLGTALSSQQITQLCRVSDSKRIVLNFDADGAGVRAANRAIGEVEQLAMQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ G + L+ ++ +D ++ R + D+ + L + Sbjct: 349 LPSGKDPDEFLKQNGAGDYRALLDQAPLWLDWQIEQVLAERDLSRADQFQQAVTALVGLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R + ++ +S Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHGRSSRHEQPGESG-- 466 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527 + EA LL ++ P QEL + + LW+ + Sbjct: 467 ------QRERCEADLLRLYLHCPRHRATIRQELRKRELEDFAIPHHRHLWAAITDLEETN 520 Query: 528 --------------EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 + + ++ + L ++ E L ++ + + Sbjct: 521 LGEGRMESISRCDDDGEGLDLIDLPRLLTDQLLLE-SSALVSRLTPLLEPGELQRVALAE 579 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE----KQIAQVTA 607 + + AL +R + L R + +E +++ + + Sbjct: 580 PLEQLRGIAALLERQKSLKRCRHLLEAWGGQRLQTLES 617 >gi|221632448|ref|YP_002521669.1| DNA primase [Thermomicrobium roseum DSM 5159] gi|221156529|gb|ACM05656.1| DNA primase [Thermomicrobium roseum DSM 5159] Length = 616 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 166/642 (25%), Positives = 278/642 (43%), Gaps = 67/642 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R ++ + I I +LIG Y+ + N + A CPFH EKTPSF+ +YC Sbjct: 3 RQDVERVREAIDIVDLIGGYIQLRKAGKN-----FKALCPFHQEKTPSFYVFPETQSFYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD +SFL + F ++++RLA AG+ L P+ +++ + L L +A Sbjct: 58 FGCGASGDAISFLMRIEQLDFRDALERLAERAGITLSPPRPEERAEDEQRRRLAELNRLA 117 Query: 125 TDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 +F H L + + YL+ RGID E F LGYAPD+ +L +L Q G E++ Sbjct: 118 AAWFAHVLWGTSFGEAARSYLERRGIDRPTAERFGLGYAPDAPSALARYLSQHGAGPEEL 177 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + AGL++ D+ + DRFRNRLIFPIR G ++ FGGRTL KYLNSP+T LF Sbjct: 178 VTAGLVVRRDDG-SLVDRFRNRLIFPIRDRHGTILGFGGRTL-GEAQPKYLNSPQTPLFD 235 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG LY A ++ I+VEGY+D ++ Q G N V+SLGTALT Sbjct: 236 KGSVLYAIDLAEESIR----------QQRTAIVVEGYLDAITAHQFGYSNTVASLGTALT 285 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG------------------ 345 E Q R L +L+ RI+L D D G +A + ++L+ L G Sbjct: 286 ERQGRHLRRLAERILLALDADVAGRQATLRGLELLRHALAEGERAVVDPRQLIRFERTLD 345 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + V+L G DPD IR +++ + ++PLVD + P L Sbjct: 346 VELAVVVLPEGLDPDDLIRQDRT-RWDEALAHAVPLVDYYLDVLLGEQPPANPRAATALL 404 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + + + D Y++++ RL+ + + R + + R Sbjct: 405 QRIAPLLLELGDLVQVDLYTRSVAARLRLPEETVRRLLASLRRQPTREPSPKTTAAAILR 464 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + E + L+ +P E+ + ++L S L + Sbjct: 465 PLST--------------EQQFVGLLLRYPEAAAHLVGEIDLESITDARYRELVSLLLA- 509 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + + QL ++ ++ + + RQ ++A Sbjct: 510 ---GQPLDDAALAEDLRDD-----IGQLRQR------FATQPDLPVPLARQAIREAFRRL 555 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 +R R + + ++ +G+ ++ + ++ + + Sbjct: 556 RRERH-DERLRSLLSEVRDAEERGDRDELRRALELIEALKQR 596 >gi|256825036|ref|YP_003148996.1| DNA primase [Kytococcus sedentarius DSM 20547] gi|256688429|gb|ACV06231.1| DNA primase [Kytococcus sedentarius DSM 20547] Length = 652 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 141/671 (21%), Positives = 264/671 (39%), Gaps = 63/671 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +++ ++V G CPFHDEKTPSF + G + Sbjct: 5 IRSEDIQAVKERTSLEDVVREHVTLRTAG----VGSLKGLCPFHDEKTPSFQVRPAVGHW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119 +CF C GD + F+ + SF E+V+RLA G+ L + K ++E + L+ Sbjct: 61 HCFGCGEGGDVIEFVQKIDHLSFAEAVERLAGQLGMELRYEEGKGPQREGGLGRRARLVE 120 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A F+H L AR+ R +L +G S F +G++P + +L EHLR GF Sbjct: 121 AHRAAEQFYHQQLLGAREARPGRDFLRAKGFGSGEAAHFGVGFSPRTGSALYEHLRAGGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++E+++ AGL YDRFR R+++PIR G + FG R + + + KYLN+ Sbjct: 181 TDEELLTAGLAGRSSRGM--YDRFRGRVMWPIRDITGDTVGFGARRIFDDDRIAAKYLNT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 ET ++ K + LY A + ++VEGY DV++ +GV+ V+ Sbjct: 239 SETPIYTKNQVLYGLDLAKKAMA----------QQRTAVVVEGYTDVMAAHLSGVEVAVA 288 Query: 297 SLGTALTEYQLRLLWKL--------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 + GTA +++L ++ R+V FDGD G +AA KA + ++ Sbjct: 289 TCGTAFGAEHIKVLRRILRDEANQAPARVVFTFDGDAAGQKAAMKAYETDQAWA---SQS 345 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G DP+ G A LI +++P+ + + + TP+ R Sbjct: 346 YVAVAPDGLDPNDLRTQRGSQAVRALIEDAVPMFEFAVRTSIDRYDLATPEGRVGAMRAA 405 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP------ 462 I I+D+ L+ Y++ + + E + R + Sbjct: 406 APIIARIRDRSLQPEYTRTVAGWIGVEVGDLSREVAAARRSGAGQPSAPGRPAAPPPVGG 465 Query: 463 ----------------SQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQEL 505 ++ L E LL ++ +P ++ ++ L Sbjct: 466 GSGRAAEGAGDAPGELAEPAGPPPLPPVDPRNPDHAAERQLLQVVLQYPGSVTGTEHSSL 525 Query: 506 ADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + + L + + + Q++ + ++ V + + Sbjct: 526 SATAFTAPALALVHAAITEAGGIERAVTLSHGAWVQQVRDAADP----RVHDLVGELSVA 581 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + GY + L R L+R + + ++ +G+AE++ + L Sbjct: 582 GLPVRMSNGQPPAGYVEGLVARLRIVELNRLIADALGALQRL-GEGDAERSREIGVRLQG 640 Query: 624 VHIQIHQIESQ 634 ++ + + Sbjct: 641 WQRELQHLRAS 651 >gi|158320312|ref|YP_001512819.1| DNA primase [Alkaliphilus oremlandii OhILAs] gi|158140511|gb|ABW18823.1| DNA primase [Alkaliphilus oremlandii OhILAs] Length = 604 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 168/639 (26%), Positives = 287/639 (44%), Gaps = 44/639 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P + I ++ + I ++I +Y+ + + A CPFH E TPSF N K Y Sbjct: 5 FPEELINEVKDNNEIIDVISEYIQVKSSGS-----SHKALCPFHSENTPSFVINREKQIY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD--LIRL 120 CF C GD + F+ + FIESV+ LA A + + + E K +I+ + Sbjct: 60 KCFGCGEGGDVVRFIMKIENLDFIESVKLLAKRANIEIKSTESSEEFKAQIKEKNLFYEI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +F+H+L YL RGI + F LGYA +S L +L+++G+ Sbjct: 120 NRKVGLYFYHNL-TKIPNPALEYLTNRGITPKTLASFGLGYANNSWDDLVLYLQKEGYQL 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I + GL I + YD FRNR++FPI + RG+V+ FGGR L KYLNSPET Sbjct: 179 EDIQKCGL-IRANKQNGYYDYFRNRIMFPIFNIRGEVVGFGGRVL-DDALPKYLNSPETK 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY A + S+ IILVEGYMDV++L QAG +N V+SLGT Sbjct: 237 IFNKSNTLYGLNFARKNI-----------SNGQIILVEGYMDVIALHQAGFKNAVASLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT+Y +LL K I+LCFDGD G++A +++D+ + ++L +G+DPD Sbjct: 286 SLTKYHGQLLKKYCDEIILCFDGDTAGIKATMRSVDI---LTEEKCQFRIMMLPQGKDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ +G F + I +++ L D + NT + +L L I IK Sbjct: 343 DFIKLHGSDKFREQINKAMSLTDYKILLAKNEHANNTIYDNMKLAKRLSEIIRDIKSPIE 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS-SLVKGKLSKK 479 + Y + + E G N + +R + LV K Sbjct: 403 QEAYIEKASAETGISKEAIKKEIYGQNPKLSNNITNTKYSSNYKRDNKYIELVPLVEQKG 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E L+ ++ ++ ++ + +++ ++L Sbjct: 463 HIVAEQQLIKFMLTDNTTIKYILDSISIDDFSVLAHREIVNYL----------------- 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS--RQKEE 597 + + +++L ++ T + +D+ + + K+++LL ++ E+ Sbjct: 506 SVHKNIAENQIEELFSDFKEDINKIFETNIDHIDLNSTLNKYVINLKKYKLLYDIKKLEK 565 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + I + + + E + L++I E+ + Q++ A Sbjct: 566 EQNAIIKDSNLTKEEVESKLLTIGMEIMKKNVQLQKLRA 604 >gi|225025102|ref|ZP_03714294.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC 23834] gi|224942063|gb|EEG23272.1| hypothetical protein EIKCOROL_01994 [Eikenella corrodens ATCC 23834] Length = 596 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 174/623 (27%), Positives = 284/623 (45%), Gaps = 57/623 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +FI +LL I ++I + V + N Y ACCPFH EKTPSF + SK FY Sbjct: 2 IPSEFIDELLAKTDIVDIIDESVPLKKGGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQ-TD 116 +CF C G + F+ G F E+VQ LA AG+ +P P+ + K + Sbjct: 57 HCFGCGAHGTAIGFVMEYQGLGFTEAVQYLADRAGMVVPQQKGRQESPEARARRKQRQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A F+ L A ++ YL +RG+ + LGYAPDS L + Sbjct: 117 LEETTAQAAAFYTREL--AANETAKGYLKKRGLSDEVAAHYGLGYAPDSWRPLAQSFA-- 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + E ++ +G++I+ D S YDRFR+R++FPIR+S GQVI FGGR L KYLNS Sbjct: 173 PYPSEALVNSGMVIEKDGSH--YDRFRHRIMFPIRNSSGQVIGFGGRVL-DDSKPKYLNS 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + A ++++ R I++VEGYMDV++L Q G+ V+ Sbjct: 230 PDTPLFDKGKNLYGLYEARAAVKEAGR----------ILVVEGYMDVVALAQFGIGYCVA 279 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGT+ T +++L + + I CFDGD G +AA++A++ L L G ++F+ L G Sbjct: 280 ALGTSTTAEHVKILMRQTDSIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEG 339 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS++R +G+ FE L+ +S PL W T + + +AEL + I Sbjct: 340 HDPDSYVREHGRERFEDMLLHQSKPLSAYFWDALTAKLDLRSQEGKAELVKTATPLLTQI 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L + Q + + + + + R Q Sbjct: 400 TAPALAFLLKQELSNLVGIDPANLAHLMGQEVPKRHVAQQRYTLPRQTFRQPQ------- 452 Query: 476 LSKKPSLREAALLLTLINHPAI-----LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 SL + + LIN P L + + AD+ + + + Sbjct: 453 ---MLSLAQQQIRRLLIN-PQWATYIDLPDHLELDADLVCLSVMAAHVRR-------SRS 501 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + + + + ++ + D+ + E++ ++ + G Q+ + K Sbjct: 502 PLSSAGLMEAMRNTPYYGNISRIMQSGTDSAHFEGDGESDALNFQSGMQKLMNALK---- 557 Query: 591 LSRQKEEIEKQIAQVTAKGEAEK 613 ++Q E ++++ + + K Sbjct: 558 -TQQVEALKRKRIEHGLSDDETK 579 >gi|113461379|ref|YP_719448.1| DNA primase [Haemophilus somnus 129PT] gi|112823422|gb|ABI25511.1| DNA primase [Haemophilus somnus 129PT] Length = 584 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 168/630 (26%), Positives = 285/630 (45%), Gaps = 55/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI D+L I +LI V ++ DY ACCPFH EKTPSF + K F Sbjct: 4 KIPHSFIDDILARTDIVDLIDSRVKLKKQGR-----DYQACCPFHHEKTPSFTVSPKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLI 118 Y+CF CH G+ +SFL F+E+++ LA++ G+ +P + EK K + +L Sbjct: 59 YHCFGCHAHGNAISFLMEYDKLEFVEAIEELASLHGLEVPRENTLDEKTRVSFKTKRNLY 118 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L++ F+ L + YL +RG+ I+ F++G++P + Sbjct: 119 ELMQEIAKFYQEQLTQNIPAQN--YLQQRGLSIEIIQRFQIGFSPQQSSFFIKKFATNRE 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 +K+ + G++ S +DRFR R+ FPIR RG+VIAFGGR +++ KYLNSP Sbjct: 177 EIQKLFDVGMVNKR-ESGELFDRFRQRVTFPIRDRRGRVIAFGGRIITQSDNRPKYLNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E++ +HKG LY F AL +S +++VEGYMDV++L Q GV V+S Sbjct: 236 ESVTYHKGYELYGLFEALQI----------NDSPEMLVIVEGYMDVVALAQFGVDYAVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T QL+L ++ + +I+ C+DGD G AA++A++ L L G ++ F+ L E Sbjct: 286 LGTATTTEQLQLAFRSTEQIICCYDGDRAGRDAAWRALENALPLLEDGRQLKFIFLPEKE 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSFIR YGK FE I ++ L + L+ + F++ + +A+L I + Sbjct: 346 DPDSFIRQYGKEGFEDYIHQAQSLSEFLFNTLSAKVDFSSTEGKAKLASLAIPLIQKVPG 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR ++ + + + + + Sbjct: 406 EMLRLSLRDMFGQKVGIFNPDKLDRLLSNQQQVEYKQKIPKTVKRTPM------------ 453 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ + + + L+ ++ L+ + E +I Sbjct: 454 -------RVLIALLLQNTNLAKIVPD-LSPLKVLQEPGLDLFEKIVILCRENVGIRAGQI 505 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + + L+ L A D + + ++ +L+ ++ EE Sbjct: 506 LEHWRDTEYSQALEILATW----------EHAVDDDKIEQEFRETLIHLYKQLVDKRIEE 555 Query: 598 I--EKQIAQVTAKGEAEKTAILISILHEVH 625 + ++++ +T + E A L+S E Sbjct: 556 LIGQERMVGLTNDEKIE-LAQLLSKKQEKK 584 >gi|300690866|ref|YP_003751861.1| DNA primase [Ralstonia solanacearum PSI07] gi|299077926|emb|CBJ50565.1| DNA primase [Ralstonia solanacearum PSI07] Length = 603 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 181/643 (28%), Positives = 286/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G S++E+++ LA GV +P P + E+ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRELAQSVGVAVPEERGGLPPAARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A+D + L++ YL RG+ F LGYAPD SL Sbjct: 117 GDVMARASDHYRKQLRS--APNAVQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKTVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L V Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDVDTRTQLTAPELPQGEMLSGLLAECDV 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V + + E + Q+ LA Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRMAVLNDDIEL---EPATQEFDAAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + +++++ + +A+K + L E+ + Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 601 >gi|307708622|ref|ZP_07645086.1| DNA primase [Streptococcus mitis NCTC 12261] gi|307615371|gb|EFN94580.1| DNA primase [Streptococcus mitis NCTC 12261] Length = 586 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGIPFMEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D +D E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFDTPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQPEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 RVQEASHVGDTDTALEELERLISQKRRME 586 >gi|152967305|ref|YP_001363089.1| DNA primase [Kineococcus radiotolerans SRS30216] gi|151361822|gb|ABS04825.1| DNA primase [Kineococcus radiotolerans SRS30216] Length = 629 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 145/643 (22%), Positives = 263/643 (40%), Gaps = 41/643 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D ++ + + + ++G+ V G + CPFHDE+TPSF G Sbjct: 4 RIHPDDLQAVKERVRLDEVVGEQVALRSGG----VGSFKGLCPFHDERTPSFTVRPVTGR 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQT 115 + CF C GD + F+ + G F ++V+RLA AGV L VD ++ + Sbjct: 60 WRCFGCGESGDAIEFVMRIDGLGFADAVERLAQRAGVQLRYVDDGGRSTQRPASDAGQRQ 119 Query: 116 DLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L+ + VA +F+ L + +L ERG F +G+AP++ +L LR Sbjct: 120 RLLEMHRVAEEFYGQQLAAPGPAETARGFLAERGFSREDAARFGVGFAPNTGDALLRQLR 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--K 232 KGF EE+++ +GL G YDRFR RL++PIR G +AFG R L + + K Sbjct: 180 AKGFGEEELVTSGLA--GQGQRGLYDRFRGRLVWPIRDVGGHTVAFGARRLFDDDRIEAK 237 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET ++ K + LY A + ++ R +++VEGY DV++ +GV Sbjct: 238 YLNSPETPVYKKSQALYGLDLAKREISRTKR----------VVVVEGYTDVMACHLSGVG 287 Query: 293 NVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 V++ GTA E R++ ++ S +V FDGD G +AA KA +L Sbjct: 288 TAVATCGTAFGEDHARIVQRMLGEADGSAEVVFTFDGDAAGQKAALKAYELDQRFSA--- 344 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + G+DP G+ A +L+ +PL + + E N+ R Sbjct: 345 QTYVAVAPAGQDPCELRLSAGEAAVAQLVEGRVPLFEFAIRSTIERFDLNSDAGRLAALD 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + I+D+ L+ Y+ + L ++++ + + A+ + + Sbjct: 405 AAAPIVGAIRDRGLQQRYAINLDRWTGFLDERFVLDRVRAHS-GARPAQQPGRPAAAVAP 463 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L + E +L ++ P + + + L + + + + + Sbjct: 464 APPRLPAADPRDPVAQLERQVLSCVLQAPWAVADVFDSLEADAFGAPGHRAVHDAVTAAG 523 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + R+ + G + +D S E + + + L Sbjct: 524 GPGEAPQGPAWLARVLDYADGPVAGLVDELAASDLPVSNEEE------LERWGRQLVAAL 577 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +R + + + ++ +AE+ A + + L + Sbjct: 578 VGQSATRAVADARRTLQRLDPTSQAEEYAAVSAELFRLEAARR 620 >gi|313903304|ref|ZP_07836696.1| DNA primase [Thermaerobacter subterraneus DSM 13965] gi|313466392|gb|EFR61914.1| DNA primase [Thermaerobacter subterraneus DSM 13965] Length = 709 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 168/725 (23%), Positives = 281/725 (38%), Gaps = 98/725 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++ + I +IG YV R +Y A CPFHDE+TPSF + +K Sbjct: 3 RLDEHVVDEIRQRLDIVEVIGDYVPLRRAGR-----EYVALCPFHDERTPSFTVSPAKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF C V GD +F+ G +F E+V +LA AGV LP P + Q L R Sbjct: 58 FYCFGCQVGGDVFTFVMKKEGWTFPEAVAQLARRAGVALPERPLSPGQRRVRDRQEQLAR 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++E+A FF +L++ + YL+ERG+ + + LGYAP L L ++G + Sbjct: 118 VLELAAAFFRQALRSPAGETARAYLEERGLPPALWDRYGLGYAPPGWDGLVGALERRGVA 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + EAGL YDRFR+R++FPI RG+V+ FGGR+L G+ KYLNSPET Sbjct: 178 PALLAEAGLA-QPRPGGGYYDRFRHRVMFPITDPRGRVVGFGGRSL-DGQEPKYLNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV-VSSL 298 LF+K + Y + L+ + ++VEGYMD +++ +AGV V+SL Sbjct: 236 ALFNKRRLWYGLDWSRPRLR----------ETGTAVVVEGYMDAIAVDRAGVGYAAVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+L+E Q+ LL + R+++ +D D G RA + + + G V L G D Sbjct: 286 GTSLSEEQVELLARYVQRVIIAYDADAAGQRATMRGLAM---FADAGVEVRVAQLPPGRD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R G A +++ ++P+V+ +++ TP RAE L + + Sbjct: 343 PDDVVRREGPDALRRILEAAVPVVEYRFRQVMGQVDTATPRGRAEAVEALAPWLARVSSP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----------------- 461 R Y + L E R + A + Sbjct: 403 VERGEYVRRYAVALGVEEGILWQEVRRAARALRSRAPATGRPARGTLRGSIAGTGGVRGE 462 Query: 462 ---------------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + R + ++ E L+ + HP Sbjct: 463 RAGRAGGAGGTGLPDAGGNNVQTVRHTNRRVPVEEVPAGVVRAERGLVAASLFHPQWQAL 522 Query: 501 QYQELADIRYDNNELQKLWS-FLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQL--DR 555 L + + L+ + RL G G++ + + Sbjct: 523 IASRLEPGDWVTPAHRLLFELACREAQATGGGVDTGRVLSRLHSLAAGGGDIGRSETGRQ 582 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRF------------RLLSRQKEEIEKQIA 603 + AG + + + G + + ++ + + Sbjct: 583 EGNMAGSAENERDRDADQPQNGVHDGVEERLPAGAAGSSSPAVAGAAVYQEAVSVLAALV 642 Query: 604 QVTAKGEAE--KTAILISILH---------EVHIQIHQIESQE-----AMIEGFGKMS-- 645 Q G E + ++ ++ +I Q+E+ ++ F +S Sbjct: 643 QAPEPGPDEPGEMERILDDYIKTLKRHSLWKIQRRIAQLEASGQDVPVDLVTRFQLLSAQ 702 Query: 646 --GRL 648 GR+ Sbjct: 703 LKGRV 707 >gi|315655775|ref|ZP_07908673.1| DNA primase [Mobiluncus curtisii ATCC 51333] gi|315489839|gb|EFU79466.1| DNA primase [Mobiluncus curtisii ATCC 51333] Length = 692 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 143/708 (20%), Positives = 257/708 (36%), Gaps = 101/708 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + ++ + IPI +++ YV R+ + CPFHDEKT SF + Sbjct: 4 KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F E+V+ LAA AG+ + V+ KE+ + L Sbjct: 58 WHCFGCSKGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + +R +++ R S F +GYAP +L ++LR KG Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 F++++I+ GL YD FR+R+++PI+ G V+ FGGR L +S KY+N Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDSQVPKYIN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + K R ++VEGY DV++ +G+ V Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285 Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335 ++ GTA T+ + + + ++ FDGD G AA KA Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + G DP G A LI PL D + K Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 +P R E + I+D+ LR Y + + L + + R + R Sbjct: 403 ESPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVSVRDTWYTVNEVWRRIRSQQR 462 Query: 456 HRDQKGPSQR--------------------------------LMQSSLVKGKLSKKPSLR 483 + Q+ L + Sbjct: 463 ASSANSSQPGGLGGPGNAAGGSEKGANLGNLTGADASGSPQVIPQTRLDPAVNTDPVWRV 522 Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529 E +L+ + P + + L + L+ ++ + + Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAMGGAGEYRRLAEVAQAAG 582 Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV--DVRQGYQQALA 583 + + L+ L ++ + + Q Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLATRPAPLYEANQSAEETRTAAESWVQNAV 642 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + L+ Q ++ Q+ ++ + + + A + L + ++ ++ Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688 >gi|73662503|ref|YP_301284.1| DNA primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495018|dbj|BAE18339.1| DNA primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 594 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 148/634 (23%), Positives = 263/634 (41%), Gaps = 48/634 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIDQSTINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQT 115 +CF C G+ F + F E+V+ L + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDIPFTEAVKELGERVNIKVETDQSYANQDNGHQVASDDL 115 Query: 116 DLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +I + E+ D++H++LK + YL ERG I+ K+GYAP++ + + L+ Sbjct: 116 KMIEMHELMQDYYHYALKKTVEGEAALNYLKERGFTDELIDARKIGYAPNNAHFCHDFLK 175 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +K + E E+GLL + + + YDRFR+R++FP+ +++G+ + + GRT + KYL Sbjct: 176 KKEYDIELAYESGLLSRNEENFSYYDRFRDRIMFPLNNAQGRTVGYSGRT-YTNQEPKYL 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F K + LYN A ++K + IIL+EG+MDV+ QAG++ V Sbjct: 235 NSPETPIFQKRRLLYNVDKARKSIRK----------NDEIILLEGFMDVIKSDQAGLKQV 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT ++ + + KL+ + L FDGD G A K+ L G V V L Sbjct: 285 VASMGTQISNEHIAFIKKLTTNVTLMFDGDFAGTEATLKSGQ---ALLQQGFNVFVVQLP 341 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 + DPD +I +G AF + + ++ N + N I+ Sbjct: 342 KNMDPDEYIGKHGADAFNYYVEHEKKSFIIYKIHTHQDEIENNDLAYERYLKEITNDISF 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 ++ LR Q + + + E Y++ + ++ + Sbjct: 402 MQSTILRKKILQEVSELFKVSLDSLNNEVGQQQDYYQPH-----------NYQIPTVPEF 450 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E ALL +N ++ L + N +++++ L + E F Sbjct: 451 NNLSKHEKAERALLKHFMNDKDTFLNYHKLLQTEDFTNQYFKRIFNVLHEFYSENDTFNI 510 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ Q + E LD + + E Y L + Sbjct: 511 SDVLQYIDINEIKEAFISLDNYMIN--------EEPYEYEIDDYINTLTSNRNEET---- 558 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + +++ + + G+ E + + + Sbjct: 559 IESLNQKLREASRLGDLELQKYYLEKIVNHNKNR 592 >gi|33865572|ref|NP_897131.1| DNA primase [Synechococcus sp. WH 8102] gi|33632741|emb|CAE07553.1| putative DNA primase [Synechococcus sp. WH 8102] Length = 683 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 179/690 (25%), Positives = 289/690 (41%), Gaps = 81/690 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G +V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIDAVKERADIVDVVGDHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA VP+ VD +++ K + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQVPVETVDGPQQERLKQQLSRREKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F L++ ++ YL E RG+ E F LGYAPD SL HL+Q Sbjct: 120 QRALALAAGWFRSQLRSTTGEQALAYLTEARGLTLATQETFGLGYAPDQWDSLLNHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S E + AGL++ YDRFR+R++ PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLSAELLEAAGLVVPRKGGNGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDKATNTIRKQDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L +++ RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRVTDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ +R D+ + L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLAKADQFQQAVSALVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R S Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEDDLRQQVKGQRWHG--------RSSRHD 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529 + + + EA LL ++ P QEL + + LW+ L Sbjct: 461 QPGDTSQRERCEADLLRLYLHAPRYRGTIRQELRQRELEDFAIPHHRLLWASLTELEETN 520 Query: 530 KYFLPEEIHQR----------------LCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 E L ++ LL +L + L Sbjct: 521 LGVGRLESISHGEDDGDGLDGLDLPRLLTDQLLLENSPLLSRLTPLLEPGELERVALAEP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAE--------KTA 615 + +R + +KR R L ++ + +E I+ + + + + Sbjct: 581 LEQLRGLAALLERQKSFKRCRHLLEAWGGQRLQTLEACISVLVQDNQEDQQGVDMEGRIE 640 Query: 616 ILISIL-------HEV----HIQIHQIESQ 634 L L E+ I ++ Q Sbjct: 641 QLFEELNRDALHYQELYYSERKHIQHLDQQ 670 >gi|17546935|ref|NP_520337.1| DNA primase [Ralstonia solanacearum GMI1000] gi|17429235|emb|CAD15923.1| probable dna primase protein [Ralstonia solanacearum GMI1000] Length = 603 Score = 347 bits (890), Expect = 3e-93, Method: Composition-based stats. Identities = 181/643 (28%), Positives = 284/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G S++E+++ LA G+ +P P + E+ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSVGMAVPEERGGLPPAARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A+D + L+ A YL RG+ F LGYAPD SL Sbjct: 117 GDVMARASDHYRKQLRGAPGA--VQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIATPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRTQLTAPELPQGEVLSGLLAECDT 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V + + E + Q+ LA Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRVAVLNDDIEL---EPATQEFDAAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ E +++++ + +A+K + L E+ + Sbjct: 563 -EPLRRELEMLQRKM-EGGHATDADK--ERLRWLVSEISRRRR 601 >gi|311113194|ref|YP_003984416.1| DNA primase [Rothia dentocariosa ATCC 17931] gi|310944688|gb|ADP40982.1| DNA primase [Rothia dentocariosa ATCC 17931] Length = 676 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 156/694 (22%), Positives = 279/694 (40%), Gaps = 90/694 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ I ++ YV G Y CPFHDE+TPSF+ G Y Sbjct: 5 IRKEDIDEVRARTDIREIVEGYVTLKGAG----IGAYKGLCPFHDERTPSFNVRPQMGTY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD SF+ A+ F E+V+RLAA G L +P+ + ++ L+ Sbjct: 61 HCFGCGESGDVYSFVMAMEHTGFTETVERLAARIGYTLHYEGGNPRDRYEASLRRRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A +FF SL +A +L RG D A + F +GYAP +L +HLR +GF++ Sbjct: 121 HKIAAEFFERSLYSANAGEAQRFLGARGFDPAATKTFGVGYAPRGWDNLLKHLRSQGFTD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E++ G+ +G+ YDRFR R+I+PIR+ G+ I FG R L + KYLN+PET Sbjct: 181 EELRATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K + +++VEGY DV++ AG++ V++ G Sbjct: 239 PLYKKSQVLYGIDLAKREMTK----------TKQVVIVEGYTDVMAAHLAGIKTAVATCG 288 Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 TA ++++ ++ I+ FDGD G +AA A + + + Sbjct: 289 TAFGAGHIKVVRRMITDDGSGGEIIFTFDGDAAGQKAALAAFEEDQRFVAQ---TYVAVA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A LI PL + + + T + R + I Sbjct: 346 QEGMDPCDLRLHRGDAAVRSLIASRRPLFEFVIDTTLKRFDLTTLEGRVLAMRAIAPIIA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------------ 455 I+D+ LR Y + + +L ++ + R+ ++ R Sbjct: 406 GIRDRDLRPAYMRKVSGQLGMELEEIQRAVAYAQRHPQQKKRYEPVAQQAQTPRYEQVSG 465 Query: 456 --------------HRDQKGPSQRLMQS-----------------------SLVKGKLSK 478 + P+ + S ++ + Sbjct: 466 YGQQVPQNYSAQPWNASAGNPAYQPEGSVNPGNTMPDTHSDTSVANTAGGEPILAPDPAD 525 Query: 479 KPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E A L + HP ++ Q+QE A + + +++ + E Sbjct: 526 PVARLEKAALEIALQHPHLMSVSQWQEFARVEFRYRMHREISRGIIHAASTVAPAAGVEW 585 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E+ + +A A+ + + + L ++RQK + Sbjct: 586 LNVVRSGTIAEVHPAIAELSV-----AALPIAHEEHLPRFIEGTLNSLF-IHQITRQKSD 639 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ Q+++ + E+ A + L E+ ++ + Sbjct: 640 LMMRLEQLSSASDGEEYAHVQRELLELEMRRRTL 673 >gi|297570261|ref|YP_003691605.1| DNA primase [Desulfurivibrio alkaliphilus AHT2] gi|296926176|gb|ADH86986.1| DNA primase [Desulfurivibrio alkaliphilus AHT2] Length = 592 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 164/631 (25%), Positives = 271/631 (42%), Gaps = 56/631 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ ++ + I+ +IG++V R N CPFH EKTPSF + +G ++C Sbjct: 8 QEVVRRIKEAADIAEIIGEHVSLQRSGANL-----KGLCPFHAEKTPSFMVSPDRGSFHC 62 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122 F C GD SFL SF E++++LA +PL P+ +++ + + +L + Sbjct: 63 FGCGEGGDVFSFLMLYHRLSFPEALRQLADRYRIPLAENTLTPQQQEEARRRENLYAVNA 122 Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A + +HH L + YL +RG+ I+ F+LG+APDS L L+++ S E Sbjct: 123 RAAELYHHYLLHSPAAAAARDYLAQRGMAGEIIQRFQLGFAPDSWDFLFNQLKKERLSPE 182 Query: 182 KIIEAGLLIDG------DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 EAGLL ++ YDRFRNR+IFPI G+V FGGR L +GE KYLN Sbjct: 183 LAAEAGLLAAKKNAPDGHSARGYYDRFRNRIIFPITDLTGRVCGFGGRILGQGEP-KYLN 241 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PET +F K + L+ + ++K + +LVEG D+L+L + VV Sbjct: 242 TPETPVFDKSRILFGLYQHREAIRK----------AKSCLLVEGNFDLLALAAHEISEVV 291 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + LGTALT LR+L + VL FDGD GL+AA +AI L L + G +L Sbjct: 292 APLGTALTTEHLRILRGYADEAVLLFDGDAAGLKAAMRAIPLFLAAKLTG---RVAMLPE 348 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPD+F+R +G +L V ++ L + ++ D + + L ++ + Sbjct: 349 GHDPDTFVRHHGPDGLRQLTVAAVSLPEFVFTELVAR-HGLGVDGKNRIIEELAPIVHSL 407 Query: 416 KDQ-KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 DQ LR + +RL ++ + P R Sbjct: 408 DDQMLLRTRFIAHFSERLGISGDQFCQSI---------------ARRPQVRRQPPEEGDQ 452 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + + E L L H + L + + + +L + P Sbjct: 453 EATARLEANEEKLFAFLFLHGSHLPDFMEAGLQEVITSPAAHRLLELMLEA-GNDFVRTP 511 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E + L E F L+ +L + + + + Q Q L +R + + Sbjct: 512 ENLLN-LAEGSFKPLVARLL-----IQGGTFYPDEHREESSQQLMQWLKRNQRKKTADQ- 564 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + ++I G+ ++ L+ + Sbjct: 565 ---LNREINAAYQSGDQQRLLELMQQKQALQ 592 >gi|239631414|ref|ZP_04674445.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525879|gb|EEQ64880.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 595 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 161/633 (25%), Positives = 267/633 (42%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+ K + Sbjct: 2 IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDAQVGHAAPVDPEISKQQHILQ 116 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D FHH L N + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ S GQVI F GR LSK ++ KYLNSPET Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G AF+ + L + + N + I I + Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + D + + + R + + Sbjct: 404 RAVYVKQLADTTGVPESALNQSLPAPQQAVPQQSSARVSYQ-----TAPVNQPVRPIDRY 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + QV TEA I ++ Q A + + + I++ Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595 >gi|88808437|ref|ZP_01123947.1| DNA primase [Synechococcus sp. WH 7805] gi|88787425|gb|EAR18582.1| DNA primase [Synechococcus sp. WH 7805] Length = 693 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 174/674 (25%), Positives = 295/674 (43%), Gaps = 63/674 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ K + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPVETVDGPQQERLKQQLSRRDTL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R++ +A +F LK A Y D+RG+ +E F+LGYAPD L +HL+Q Sbjct: 120 HRVLALAAGWFRSQLKVASGADALRYLQDKRGLSDATLEQFELGYAPDQWDGLLKHLQQI 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G E + AGL++ YDRFR+R++ PI+ +G+VI FGGR+L E KYLN Sbjct: 180 EGLDPEHLEAAGLVVPRKGGNGFYDRFRHRVMVPIKDRQGRVIGFGGRSLDGTEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+LY A + ++K R ++VEGY DV++L AGV N V Sbjct: 239 SPETEVFEKGKHLYGLDRAASAIRKDDRA----------VVVEGYFDVIALHAAGVTNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRCCDGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ E R + D+ L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQVLEGRDLSKADQFQRSVSALVELL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R + R + + Sbjct: 409 GKLPQSAIRTHYIQQVSERLSGGQGRLALQLEEDLRQQVQGQRWHGRSARHE-------- 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFV-- 527 K + + EA +L ++ P+ QEL + + LWS L Sbjct: 461 KSGEASQRERCEAEILRLYLHCPSHRGSIRQELRRRELEDFALQHHRLLWSCLTELEEGN 520 Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 ++ + L ++ L+ +L + L Sbjct: 521 LGSVRLESISRGEDRGDDLADLDLPRLLTDQLLLENSSLVTRLTPLLEPGELQKVALSRP 580 Query: 571 IVDVR--QGYQQALALYKRFRLLS-----RQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +R + +KR R L ++ + +E+ IA + + ++ + + Sbjct: 581 MEQLRGTAAMLERQKSHKRCRHLLEAWAGQRLQTLERCIAVLIDEEREQQQPQTVDMEQR 640 Query: 624 VHIQIHQIESQEAM 637 + + + EA+ Sbjct: 641 IQAMFDDLNA-EAL 653 >gi|329119714|ref|ZP_08248394.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200] gi|327464163|gb|EGF10468.1| DNA primase [Neisseria bacilliformis ATCC BAA-1200] Length = 589 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 183/627 (29%), Positives = 291/627 (46%), Gaps = 49/627 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I Q V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLSKVDIVDIIDQQVPLKKSGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTD 116 +CFSC G + F+ G SF E+VQ LA G+ +P + +++K Q Sbjct: 57 HCFSCGAHGSAVGFVMEHQGLSFPEAVQYLADRVGMVVPQTRGRSDNPEARAQRKKTQQT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L A F+ LK++ + YL+ RG+ + I + LGYAP+ L + + Sbjct: 117 LEETTAAAASFYAQQLKSSPAAQQ--YLNTRGLSAEIIAHYGLGYAPEGWQPLAQVF--R 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +I++G++I + YDRFR+R++FPIR RGQVI FGGR L KYLNS Sbjct: 173 PYPSSPLIDSGMVIHNEEQNRHYDRFRHRIMFPIRDIRGQVIGFGGRVL-DDSKPKYLNS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T LF KGKNLY + A ++ + R I++VEGYMDV++L Q G+ V+ Sbjct: 232 PDTPLFDKGKNLYGLYEARAAIKDAGR----------ILVVEGYMDVVALSQFGIGYGVA 281 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T +++L + + I CFDGD G +AA++A++ L L G ++F+ L Sbjct: 282 ALGTATTAEHVKILMRQTDDIYFCFDGDAAGRKAAWRALENALPQLKDGKSLHFLFLPEE 341 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDS++R +GK FE LI +S PL + W ++ + NT + +AEL + I Sbjct: 342 HDPDSYVRAFGKAQFEDALIHQSKPLSEYFWYALSDGLNLNTQEGKAELVKKASPLLAQI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 L + ++ RL ++ + + R + + + Sbjct: 402 TAPALGFL----LKQRLGEMVGIDPADLAVLLGQEMPQRRVQAKSYKLPAYT------AR 451 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LP 534 + P+L + L+ +L+ +PA EL D + L + + Sbjct: 452 QMRMPTLAQR-LIRSLMANPAWAAHV--ELPDYLPPEEDAACLVD-IADFIRSRPTLPDH 507 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 +I + +L + RQ + +A D L K R Q Sbjct: 508 AQIWEHFRGSRTETVLHTIYRQSG----MTDYDDAGEEDETAFADGLAKLAKSLRA--AQ 561 Query: 595 KEEIEKQIAQVTAK-GEAEKTAILISI 620 + ++++ AQ E + L++ Sbjct: 562 LDILKQKTAQGGLTPAEKKLLLQLLAE 588 >gi|260911310|ref|ZP_05917909.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295] gi|260634570|gb|EEX52661.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295] Length = 660 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 152/681 (22%), Positives = 274/681 (40%), Gaps = 67/681 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I+ + I +++ ++V + N Y CPFH+E+TPSF + ++G Sbjct: 2 IDRATIEKIQEAANIVDVVSEFVTLRKAGAN-----YKGLCPFHNERTPSFMVSPARGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G +SF+ ++ E+++ LA + + +++ + + + Sbjct: 57 HCFGCGKGGTPVSFIMEHEQMTYPEALRWLANKYHIEIKERELSDDERREQNERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A F +L D Y RG I F+LG+ + R L KG+ Sbjct: 117 NEWAAKHFEDTLHTNVDGLAIGMQYFRSRGFRDDIIRKFRLGFDLNDRELLARTAIDKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + + +++ GL D+ DRF R+IFP G+V+ FGGR L KG KY+N Sbjct: 177 NVDFLVKTGLCYRTDDG-RYVDRFAGRVIFPWFGVSGKVVGFGGRLLDTRTKGVQQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK LY F + K + +VEGY DV+S+ Q GV+NVV Sbjct: 236 SPDSDIYHKDHELYGIFQGKKAIAK----------EDCVYMVEGYTDVVSMHQCGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + IVL +DGD G+ AA + D+ L G V +L Sbjct: 286 ANSGTALSVHQIHTLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLFPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F + I ++ R + P R+E + ++ I Sbjct: 343 GDDPDSFARKHNAEEFRQYIADNQTDFIQFKTRVLLDG-VTDPTRRSEAISSIVQSVSVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR---HRDQKGPSQRLMQSSLV 472 DQ LR Y RL I + Y R ++ R + + + ++ Sbjct: 402 PDQILRDTYLHDCSQRLGVAETTLINSMNRYIRESRERRSTEASRAVQEAVEATPRPTIQ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPA-------------ILQEQYQELADIRYDNNEL---Q 516 ++ + E L+ ++ + +L + + +EL Sbjct: 462 TVTPLQQAAKVERMLVEQVVKYGERIVLRNVEDENGNLLNLTVAQFIQYDFMQDELVFQH 521 Query: 517 KLWSFLFSDFVE---QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 L++ + + E F E + +L +L + +D Sbjct: 522 PLFNRILQEAAERSVHPDFKSEPYFVHHEDIEVSKLATELCMDPYQYLKLKQPEPIHPLD 581 Query: 574 VRQGYQQA-------------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + + L L R + + + ++ +IAQ + E EK L++ Sbjct: 582 EEEKRLKEKEKEEELRQRTVHLLLDFRLDYVEHRLKTLQTEIAQAAS--EPEKLMQLMAE 639 Query: 621 LHE---VHIQIHQIESQEAMI 638 + + ++ + E ++ Sbjct: 640 FKDMQTIRNELARRLGSEIIV 660 >gi|225018168|ref|ZP_03707360.1| hypothetical protein CLOSTMETH_02105 [Clostridium methylpentosum DSM 5476] gi|224949165|gb|EEG30374.1| hypothetical protein CLOSTMETH_02105 [Clostridium methylpentosum DSM 5476] Length = 617 Score = 347 bits (889), Expect = 4e-93, Method: Composition-based stats. Identities = 154/603 (25%), Positives = 263/603 (43%), Gaps = 28/603 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 FI L + I ++I YV R N A CPFH EKTPSF + + Sbjct: 34 ISESFITQLKLACDIESIISSYVPMKREGRNK-----KALCPFHLEKTPSFVIYEDTQSF 88 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F+ + +IE+V+ LAA G+ +P D + ++K +++ ++ + Sbjct: 89 YCFGCGAGGDVITFIMRIENLDYIEAVRFLAARVGMTVPE-DGQDDRKARLKARILEMNR 147 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FFH +LK+ + Y R + + + LGYAPD +SL HL KG+S E+ Sbjct: 148 EAARFFHANLKSPAGQAGLRYFAGRRLTKQTVVTYGLGYAPDDWHSLLRHLSSKGYSYEE 207 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 A L++ YD+FRNR++FPI RG VI FGGR L KYLNS +T +F Sbjct: 208 QEAAALVVKSQKG-NYYDQFRNRVMFPIIDLRGNVIGFGGRVL-DDSKPKYLNSADTPVF 265 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K +NL++ A ++L EGYMDV+++ QAGV NVV++LGTAL Sbjct: 266 KKSRNLFSLNFAKQA------------KERTLVLAEGYMDVIAMYQAGVHNVVATLGTAL 313 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RL+ + + +++ +D D+PG A KA L G ++L +DPD + Sbjct: 314 TSEQARLISQYADDVIIAYDSDEPGQIATAKASRL---FEEAGVEARVLVLKDAKDPDEY 370 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +G F+ L+ +S + +KR E PDE+ + I + D R Sbjct: 371 IKKFGAGRFQVLLEQSENVTSSKFKRLKEKYDLELPDEKIKYLGEACGVIAGLYDSLERD 430 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---LVKGKLSKK 479 Y+ + + + + + + + R+ + + K Sbjct: 431 VYASTLAAECGLTKEVVLDKVAAIRKSRFGRQKKREWRDIQSGRAAPPDRLNPESAKYPK 490 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E ++ L +P L+ ++ + + ++L+ + ++ Sbjct: 491 EAAAEEGIIGFLCKNPDYLEYLLGKIQPGDFPTSWNKRLFELIVDKIQNNLPIELSFFNE 550 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEE 597 +L G L R + + + + + + ++++E Sbjct: 551 QLSPDEMGRFSGILARFRELSNTKQSLDDYIDVLLKHKNRLKDEDRFDLPVDAYEKRRQE 610 Query: 598 IEK 600 + K Sbjct: 611 LLK 613 >gi|325843418|ref|ZP_08167976.1| DNA primase [Turicibacter sp. HGF1] gi|325489340|gb|EGC91714.1| DNA primase [Turicibacter sp. HGF1] Length = 598 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 150/633 (23%), Positives = 278/633 (43%), Gaps = 43/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ ++ I +++ YV + N Y CPFH E TPSF + KG Sbjct: 5 RIPQELFDQVIAQSDIVDVVSDYVQLTKAGKN-----YKGLCPFHGENTPSFVVSPDKGI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 Y CF C G+ +SF+S L S+ +++ +LA AG+ V + + L Sbjct: 60 YKCFGCGEGGNVISFISQLEAISYPQAILKLAQRAGIQTDLVASLSQSTQNSKYKNEYDL 119 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E + F+H+ L + + K YL +RG+ + IE F +G +P +L + L FS Sbjct: 120 LEFSKGFYHYYLNHTKEGKIALEYLTKRGMSAEMIEQFGIGLSPSYSDALVKTLANNQFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 L + +++ YDRF++R++FPI G+V+ F GR +G++ KY+NSP Sbjct: 180 --LPQATQLGLLNEHNGQYYDRFKSRIMFPIFDKVGKVVGFSGRVFLEGDTHLGKYVNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ LF KGK +YN A +++ R ++L EG++DV+S +AG+ V++ Sbjct: 238 ESPLFQKGKLIYNLHEAKLAIRRHNR----------VLLFEGFLDVISAVEAGISESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTA TE R L +L+ I++C+DGD GL AA KAI + + V+ V + Sbjct: 288 MGTAFTEDHGRELRRLTDHIIICYDGDKAGLAAANKAIPI---LMSQNFIVSVVEIPSKM 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AF KL+ +++P +D ++ + R + + + + ++ Sbjct: 345 DPDEFIKTNGAEAFSKLVDQAIPAIDYQYRYIKRQFNLEFVSHRDQFKRAIYHLAYSLQS 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + + Q + E + KN + K ++ + L K Sbjct: 405 PTLQELILKKLAQDISIGEQSILQEFASGKSQVYKNTNINNNKNEMSQMRRHHLRDTK-- 462 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + +EL ++ + + ++ + + + Sbjct: 463 --YDRSEKMLIHYMLKDRRVALQVEKELNGY-LNDPTRRNIVLYILDYYTVHETMNLQYF 519 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + E + L L + + Q E+ Sbjct: 520 LNWIDEALVKPITDII-----------FECETLPPLTNDNVIRDLILVVKEYVYKAQMEQ 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++KQI++ T E L+ ++++ Q + Sbjct: 569 LKKQISEATLDHEK---LELLGKVNQLKQQFGK 598 >gi|182418406|ref|ZP_02949700.1| DNA primase [Clostridium butyricum 5521] gi|237666631|ref|ZP_04526616.1| putative DNA primase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377788|gb|EDT75332.1| DNA primase [Clostridium butyricum 5521] gi|237657830|gb|EEP55385.1| putative DNA primase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 591 Score = 347 bits (889), Expect = 5e-93, Method: Composition-based stats. Identities = 166/632 (26%), Positives = 288/632 (45%), Gaps = 41/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I ++I + V + N Y CPFH++K+PS + K Sbjct: 1 MQIREEVIERIRQDNDIVDIISENVRLKKSGRN-----YVGLCPFHNDKSPSLSVSQDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CFSC G+ ++F+ +F E+ + LA AG+PL + + K + K + L ++ Sbjct: 56 IYKCFSCGEAGNVITFVMKYKKLTFYEASKYLADKAGIPLELGNAKESQITKKKELLYKV 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ ++L+ Y +RGI I+ F LGYA D + L +L++KGF+E Sbjct: 116 NTEAARYYFYNLQRT--SFAKEYFLKRGIREEVIKRFGLGYAQDRWHDLIMYLKKKGFNE 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++EAGL++ + +YDRFRNR++FP+ RG+VI FGGR L KYLNSPET+ Sbjct: 174 NLLLEAGLILKSEKKGNTYDRFRNRVMFPVFDVRGKVIGFGGRVL-DDSKPKYLNSPETV 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A + +II+VEGYMD++SL Q G+ N V+SLGT Sbjct: 233 VFHKGTNLYGLNFATK----------NKLEQDYIIIVEGYMDLISLHQHGITNTVASLGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q RLL + ++++ +D D G A + +++ G V + + +G+DPD Sbjct: 283 ALTINQARLLKRYVNKVIISYDADVAGQTATLRGLEI---LRHAGLDVKVLKVPQGKDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R GK AF +L+ +LPL++ K+ E + +E + + + + Sbjct: 340 EFVRNNGKDAFLRLVDNALPLIEYRIKKAAEGINLRDNNELVKYGEKFAEILADL-NPIE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q S +K ++K K + Sbjct: 399 KDVYIKKISEETSIKEQAIYDLLSQVMAKDQKENNFMNKKA-------DYGTKLYVEPGY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E L+ + QE + + + + K++S + + K I Sbjct: 452 LKAERTLIKLMFKE-EYFQELNELIKVGDFVLDSHNKIYSLIL----QGKNEDTSNIISY 506 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L R + +++ + + V + Y Q + YK + + K+ ++ Sbjct: 507 LESRCDD---VESSKELINIKEQEILEFTDKDRVIKDYMQEVQSYKLKKKIEDLKK--KQ 561 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 I + +G+ ++T + L + + + E Sbjct: 562 SI--LEKEGKFQETIEIAMELTRLTKSLKRGE 591 >gi|323529250|ref|YP_004231402.1| DNA primase [Burkholderia sp. CCGE1001] gi|323386252|gb|ADX58342.1| DNA primase [Burkholderia sp. CCGE1001] Length = 622 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 169/653 (25%), Positives = 280/653 (42%), Gaps = 56/653 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGAGGGYSPAASK 116 Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 T L +++ A D++ L+ A YL +RG+ F LGYAPD + Sbjct: 117 AVTTALSDVMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ DG YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPNYRDDSLVESGLVIVSEKADGQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQGYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H + Sbjct: 284 LGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + + ++PL + + + P+ +A Sbjct: 344 RFLFLPAEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F + R Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDARIA---------------AAA 448 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S K + + E L L+ +P + +E +L+ + + Sbjct: 449 RSAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508 Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 LGESAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +L + + ++ Q++ + T + L E++ + ++ Q Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELAELNRKRADMKRQ 619 >gi|293376343|ref|ZP_06622580.1| DNA primase [Turicibacter sanguinis PC909] gi|292645032|gb|EFF63105.1| DNA primase [Turicibacter sanguinis PC909] Length = 598 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 150/633 (23%), Positives = 278/633 (43%), Gaps = 43/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ ++ I +++ YV + N Y CPFH E TPSF + KG Sbjct: 5 RIPQELFDQVIAQSDIVDVVSDYVQLTKAGKN-----YKGLCPFHGENTPSFVVSPDKGI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 Y CF C G+ +SF+S L S+ +++ +LA AG+ V + + L Sbjct: 60 YKCFGCGEGGNVISFISQLEAISYPQAILKLAKRAGIQTDLVASLSQSTQNSKYKNEYDL 119 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E + F+H+ L + + K YL +RG+ + IE F +G +P +L + L FS Sbjct: 120 LEFSKGFYHYYLNHTKEGKIALEYLTKRGMSAEMIEQFGIGLSPSYSDALVKTLANNQFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 L + +++ YDRF++R++FPI G+V+ F GR +G++ KY+NSP Sbjct: 180 --LPQATQLGLLNEHNGQYYDRFKSRIMFPIFDKVGKVVGFSGRVFLEGDTHLGKYVNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ LF KGK +YN A +++ R ++L EG++DV+S +AG+ V++ Sbjct: 238 ESPLFQKGKLIYNLHEAKLAIRRHNR----------VLLFEGFLDVISAVEAGISESVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTA TE R L +L+ I++C+DGD GL AA KAI + + V+ V + Sbjct: 288 MGTAFTEDHGRELRRLTDHIIICYDGDKAGLAAANKAIPI---LMSQNFIVSVVEIPSKM 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FI+ G AF KL+ +++P +D ++ + R + + + + ++ Sbjct: 345 DPDEFIKTNGAEAFSKLVDQAIPAIDYQYRYIKRQFNLEFVSHRDQFKRAIYHLAYSLQS 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + + Q + E + KN + K ++ + L K Sbjct: 405 PTLQELILKKLAQDISIGEQSILQEFASGKSQVYKNTNINNNKNEMSQMRRHHLRDTK-- 462 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ ++ + + +EL ++ + + ++ + + + Sbjct: 463 --YDRSEKMLIHYMLKDRRVALQVEKELNGY-LNDPTRRNIVLYILDYYTVHETMNLQYF 519 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + E + L L + + Q E+ Sbjct: 520 LNWIDEALVKPITDII-----------FECETLPPLTNDNVIRDLILVVKEYVYKAQMEQ 568 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++KQI++ T E L+ ++++ Q + Sbjct: 569 LKKQISEATLDHEK---LELLGKVNQLKQQFGK 598 >gi|308270754|emb|CBX27364.1| hypothetical protein N47_H21860 [uncultured Desulfobacterium sp.] Length = 623 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 156/648 (24%), Positives = 291/648 (44%), Gaps = 51/648 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ I ++I + V + N Y CPFH EKTPSF N K + Sbjct: 8 IPEEKIFEIKNAADIVDIISESVLLKKSGRN-----YVGLCPFHSEKTPSFTVNYEKQIF 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C G+ ++L+ G +F E+V+ +A G+ +PV P+ K+ + + + Sbjct: 63 YCFGCGAGGNVFAYLTKKEGFTFPEAVKYVAGKYGIDIPVEKISPEKHKEISEKDSIFSI 122 Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A DFF L K+ YL +R I + I + LGYAPD L + +K Sbjct: 123 NKQAMDFFKGCLLNEDNGKKALEYLKKRKISDNTIRDYHLGYAPDGWNVLLNYFAKKNVL 182 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +AGL+I + S YDRFRNR+IFPI QVI FGGR + KYLNSPET Sbjct: 183 TSMLEKAGLIIRKNKSEGFYDRFRNRIIFPIFDVNSQVIGFGGRVM-DDSLPKYLNSPET 241 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 I+F+K ++LY A + + + + +VEGY D+LSL + G+ N V++LG Sbjct: 242 IVFNKSQSLYGLNMARSECR----------ITETVFIVEGYFDLLSLHENGIINSVATLG 291 Query: 300 TALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 TA++ +++L + +I+L +D DD G++AA ++I++ ++L G Sbjct: 292 TAISSEHVKILRAIVGKDGKIILVYDSDDAGIKAAQRSIEI---FDKGFADARILVLPSG 348 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++ +G+ AF+ ++ + V L + + + + + LKN ++ I+ Sbjct: 349 YDPDSYLVKFGQQAFKNAVLSAQGTVSFLINSAIKKY-GLSVEGKIHIVSELKNTLSSIE 407 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG------YGRYWKKNARHRDQKGPSQRLMQSS 470 D R Y + + +++ +Y K+ + P S Sbjct: 408 DNVARALYIRELSEKINIDESALHERVRETLSGITLNKYINKSDSNTISDNPDVAGYDSE 467 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + ++ + E ++ ++ ++ E + + ++ L+ + + + Sbjct: 468 NSIIENRQRGTRLERQIITMMLQFSEMVPEIIKRDLLSGFTDDILKSIGNAIIDQ----- 522 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 Q L E + + D +++ + + + + D + L L K+F Sbjct: 523 --------QTLPEPNLRDAIPVFDNNEKNSIVAFLSIKDEVWDNKS----CLELIKQFEY 570 Query: 591 LSRQKEEIE-KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + ++ ++ K+I Q + + L+ ++ + + S +A+ Sbjct: 571 IYKRNKDTSIKKIKQAEETNDEKLLLELLRA-KQIQAKNKRNSSLKAL 617 >gi|237748837|ref|ZP_04579317.1| DNA primase [Oxalobacter formigenes OXCC13] gi|229380199|gb|EEO30290.1| DNA primase [Oxalobacter formigenes OXCC13] Length = 599 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 177/643 (27%), Positives = 294/643 (45%), Gaps = 64/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I ++G +V + N + CPFH EK+PSF + K FY Sbjct: 2 IPQSFIQDLLNRVDIVEVVGNHVQLKKAGANLL-----GLCPFHTEKSPSFTVSPVKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDL 117 +CF C G ++FL G SF+E+V+ LA G+ +P + + KK+ L Sbjct: 57 HCFGCGRNGSAITFLMEHSGLSFVEAVEELAGSVGMTVPEDETRIPPGERAKKQAKTLAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A+ F+ LK YL +RG+ F LGYAP++R SL+ Sbjct: 117 TEVMTQASRFYRQQLKK--APEAIDYLKKRGVTGEIALRFGLGYAPEARDSLKNGFEDYR 174 Query: 178 FSEEKIIEAGLLID----GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 SE + + S+ YDRFR+R++FPIR++RGQVI FGGR L KGE KY Sbjct: 175 ASELEEAGLVIEKQGDEAFHTSSKRYDRFRDRIMFPIRNTRGQVIGFGGRILEKGEP-KY 233 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF KG LY F A ++ S ++++VEGYMDV++L Q G Sbjct: 234 LNSPETPLFQKGNELYGLFEARQAIR----------ESGYVLVVEGYMDVVALAQLGFPQ 283 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA T Q++ L + + ++ FDGD G AA +A++ L + V F+ L Sbjct: 284 AVATLGTACTPVQVQKLMRQTDSVIFSFDGDAAGRGAARRALEASLPLVSDTKGVGFLFL 343 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDS++R +G AF+ L+ +++PL + L + + + NT + RA + K+ Sbjct: 344 PPEHDPDSYVREFGPEAFDALVKKAMPLSEFLLEEIVGDNNLNTLEGRARAQHTAKSLCA 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR + RL Q+ Q E + + K + R + + R L Sbjct: 404 SLTPSALRLQILR----RLAQITQTPDGELETFLGFSKPVVQTRRIQARAPRPPVVGL-- 457 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQY-QELADIRYDNNELQKLWSFLFSDFVE-QKY 531 E +L L+ P +E ++ I+ + + +L + + + + Sbjct: 458 ----------ERQVLRLLMMFPRFGEELSPDDIDTIKGFSPDQGELLMAILNAYGVMGEQ 507 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + L G ++ V++ E +++++ +Q + R+L Sbjct: 508 ANLAALVEHLRLDGVD-----CEQLVQETVGQEFEAEPALLELKGAVRQI-----KLRVL 557 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 S + E++ K +E+ Q ++ + Sbjct: 558 SSELEKLFSSSLTTEEKN---------RRYYELKQQQETLQKE 591 >gi|288927429|ref|ZP_06421276.1| DNA primase [Prevotella sp. oral taxon 317 str. F0108] gi|288330263|gb|EFC68847.1| DNA primase [Prevotella sp. oral taxon 317 str. F0108] Length = 660 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 150/683 (21%), Positives = 275/683 (40%), Gaps = 71/683 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I+ + I +++ ++V + N Y CPFH+E+TPSF + ++G Sbjct: 2 IDRATIEKIQEAANIVDVVSEFVTLRKAGAN-----YKGLCPFHNERTPSFMVSPARGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G +SF+ ++ E+++ LA + + +++ + + + Sbjct: 57 HCFGCGKGGTPVSFIMEHEQMTYPEALRWLANKYHIEIKERELSDDERREQNERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A F +L N D Y RG + F+LG+ + R L KG+ Sbjct: 117 NEWAAKHFEDTLHNNVDGLAIGMQYFRSRGFRDDIVRKFRLGFDLNDRELLARTAIDKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + E +++ GL D+ DRF R+IFP G+V+ FGGR L KG KY+N Sbjct: 177 NVEFLVKTGLCYRTDDG-RYVDRFAGRVIFPWFGVSGKVVGFGGRLLDSRTKGVQQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK LY F + K + +VEGY DV+S+ Q GV+NVV Sbjct: 236 SPDSDIYHKDHELYGIFQGKKAIAK----------EDCVYMVEGYTDVVSMHQCGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + IVL +DGD G+ AA + D+ L G V +L Sbjct: 286 ANSGTALSIHQIHTLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLFPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F K I ++ R + + R+E + ++ I Sbjct: 343 GDDPDSFARKHNAEEFRKYIADNQTDFIQFKTRVLLDGVTDPA-RRSEAISSIVQSVSVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLV 472 +Q LR Y RL I + Y R ++ + + + ++ Sbjct: 402 PNQILRDTYLHDCAQRLGVAETTLINSMNRYIRESRERRSTETSRAVQESMETTPRPTIQ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQEL------------------ADIRYDN 512 ++ + E L+ ++ + +L+ E ++ + + Sbjct: 462 TVTPLQQAAKVERMLVEQVVKYGERIVLRNVEDEDGNLLNLTVAQFIQYDFMQDELAFQH 521 Query: 513 NELQKLWSFLFS-----------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 ++ FV + ++ LC + L +L + Sbjct: 522 PLFNRILQEAAERSVYPDFKAEPYFVHHEDIELSKLATELCMDPYQYL--KLKQPEPTHP 579 Query: 562 LWSATTEANIVDVRQGYQQA---LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 L + +Q L L R + + + ++ +IAQ + + EK L+ Sbjct: 580 LDEEEKRLKEKEKEDELRQRTVHLLLDFRLDYVEHRLKTLQTEIAQAAS--DPEKLMQLM 637 Query: 619 SILHE---VHIQIHQIESQEAMI 638 + + + ++ + E ++ Sbjct: 638 AEFKDMQTIRNELARRLGSEILV 660 >gi|85860025|ref|YP_462227.1| DNA primase [Syntrophus aciditrophicus SB] gi|85723116|gb|ABC78059.1| DNA primase [Syntrophus aciditrophicus SB] Length = 594 Score = 346 bits (888), Expect = 5e-93, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 279/633 (44%), Gaps = 50/633 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P D I ++ I I LI +Y+ + N + CPFH+EKTPSF N K YY Sbjct: 7 PGDKIAEIKSRIDIVELISEYISLKKAGKN-----FLGLCPFHNEKTPSFTVNREKQMYY 61 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRLI 121 CF C KGD +FL L +F ++++ LA GV LP + + K + + +I++ Sbjct: 62 CFGCGEKGDVFAFLMRLHNTTFPDTLKLLARRTGVILPTSSFRGDGKSQLNAREQIIQIN 121 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++A ++ +L + K YL ERG+ IE+F LGYA D LR HL +K S + Sbjct: 122 QIAAAYYKDNLFSPGGKAASSYLKERGLKESTIEVFSLGYALDGWRYLRNHLERKKQSLK 181 Query: 182 KIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EAGL++ D YDRFRNRL+FP++ G++IAFGGR L KYLNSPE+ Sbjct: 182 MAGEAGLIVAKDDRPDVLYDRFRNRLMFPVKDVDGRIIAFGGRIL-GDGEPKYLNSPESP 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 + KG+ LY A +++ ++ILVEGY D++ L AG++NVV++LGT Sbjct: 241 AYIKGRQLYGLNLAKEEIRR----------CGYVILVEGYFDLIVLWNAGIKNVVATLGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ + L+ + + ++ + FD D+ G +A +++++ + V+L G DPD Sbjct: 291 ALTKDHVALIRRYTDQVAITFDSDEAGKKALARSVEMFIAAH---MDARAVVLPEGLDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+R YG A ++++ + +VD + N+ +ER I I+D Sbjct: 348 DFVRRYGGEALKRMVEGAPSIVDYYIENAIGRG--NSFEERGGAAARAAAFITGIQDVID 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + ++L E R + + + Sbjct: 406 RNLFIKRVAEKLGIDQDILKKEVQRRLRSNAR--------------KEFLTPVQQREAAY 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEIH 538 S E ++ ++ +P ++ A + N +L+ + V + Sbjct: 452 SGLELNMIHLMMEYPDVIPSILSSKAMEYFINRDLRLIGQSWIDYAVNETVNPGDAVSFI 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q+L ++ +L + + + + R Q + I Sbjct: 512 QKLDNPDIEDIFLRLFVKGSPFQ----------KEQLDSITSDMIRQVKRRWYKEQHKNI 561 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ A G+ L+ + + ++ Sbjct: 562 KNRLLNAQASGDQALGRELLKEKERLMREEREL 594 >gi|16272476|ref|NP_438690.1| DNA primase [Haemophilus influenzae Rd KW20] gi|1172619|sp|Q08346|PRIM_HAEIN RecName: Full=DNA primase gi|1573516|gb|AAC22189.1| DNA primase (dnaG) [Haemophilus influenzae Rd KW20] Length = 593 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 172/634 (27%), Positives = 289/634 (45%), Gaps = 55/634 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P K + + + + Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYEKRVNHSGKPQANYQTKRN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ F+ + L + + YL +RG+ IE F++G+ P++ ++ Sbjct: 119 LYELMQEIATFYQNQL--PLNTQAQEYLQQRGLSPEIIERFQIGFVPNAMDTVLRKFGVN 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++K+IE G+L D YD+FRNR++FPIR RG+ +AFGGR L E KYLNS Sbjct: 177 REEQQKLIELGMLSRNDRGNI-YDKFRNRIMFPIRDKRGRTVAFGGRVL-TDEKPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PETI +HKGK LY + AL + +++VEGYMDV++L Q GV V+ Sbjct: 235 PETITYHKGKELYGLYEALQ----------TNDEPKQLLVVEGYMDVVALAQFGVDYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGT+ T Q++L+ + + ++V C+DGD G AA++A++ L +L G ++ F+ L G Sbjct: 285 SLGTSTTSEQIQLILRSTEQVVCCYDGDRAGRDAAWRALENALPYLEDGRQLKFIFLPDG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 E+PD++IR YGK FE+ I + L + ++ + F+T + R +L I+ I Sbjct: 345 EEPDTYIRQYGKEKFEEYIESAQSLSEFMFAHLSPQVDFSTKEGRGKLVALAAPLIHQIP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + +L Q + + + M Sbjct: 405 GEMLRLSLRNMLAQKLGIFDQTQLENLIPKKLEQANTQQKVTHNKIKKTPM--------- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ L+ +P +++ + ++ L + +++ + Sbjct: 456 --------RMVISLLMQNPELVKRMSES-GVQALRAEAGFEILEKLTALCRQREGITTGQ 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + L+ L + D+ + Q R + + Sbjct: 507 ILEYFRNTSYSNPLEILATWDHLL---------DESDIINAFSQ----NYRRLNIQAIER 553 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +IE IA+ +G + ++ L Q + Sbjct: 554 DIEMLIAKERTEGLTNEEKTVLVHLLAGKEQQKK 587 >gi|134292972|ref|YP_001116708.1| DNA primase [Burkholderia vietnamiensis G4] gi|134136129|gb|ABO57243.1| DNA primase [Burkholderia vietnamiensis G4] Length = 623 Score = 346 bits (888), Expect = 6e-93, Method: Composition-based stats. Identities = 174/655 (26%), Positives = 276/655 (42%), Gaps = 64/655 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGAGGGGGDYPAPVS 116 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167 + + T L ++ VA D++ L+ YL RG+ F LGYAPD Sbjct: 117 KSVATALSDVMSVACDYYRKQLRG--ATVAIQYLKNRGLTGEIAARFGLGYAPDGWQNLE 174 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 S R E ++ D +A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 SAFPDYRDDSLVESGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGQVIGFGGRVLGS 234 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVALA 283 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 QLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADNRT 343 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 IRFLFLPPEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALFD 403 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + LR DRL F++ R Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLHIPFEEVAALSEVDARIA---------------AA 448 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 ++ + E L TL+ +P I E + +L++ + Sbjct: 449 PRQAPARSERRRVTDSEKRALRTLVMYPRIATALDDEQLATLRALPRIGELFAEVAEHAR 508 Query: 528 EQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGYQ 579 L + + + E+ +++ D VRD L + E R+ + Sbjct: 509 ALGDGAEFRLLSDVLRASSNSATYDEIFREILDYDENVRDLLLQNPEDETVFERQREQER 568 Query: 580 ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 IAGEELQAAVLKMRYDACCDRLDRLARQ--STFTPEELTELTELNQQRTDMKRRL 621 >gi|269958879|ref|YP_003328668.1| DNA primase [Anaplasma centrale str. Israel] gi|269848710|gb|ACZ49354.1| DNA primase [Anaplasma centrale str. Israel] Length = 607 Score = 346 bits (887), Expect = 6e-93, Method: Composition-based stats. Identities = 182/631 (28%), Positives = 296/631 (46%), Gaps = 50/631 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + + +++ + + +R N Y CPFH EKTPSFH N S +YCF C V Sbjct: 14 IREKVRLLDVVSKRIKLIKRGNNQ----YVGLCPFHAEKTPSFHVNCSNDMFYCFGCGVH 69 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F+S + G SF+E+++ LA + GV LP + E L L++ A +F Sbjct: 70 GDVVQFVSDIDGLSFMEAIEYLAQVYGVSLPAKSGRGEA-----DSLYELMDYAARWFVE 124 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L ++ + YL R ID + F+LGY P S +R EK+ +AGLL Sbjct: 125 QL--SKSPAVLAYLKARSIDDRTVRKFRLGYVPVS--GIRTCFASSHIGFEKVRDAGLLT 180 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 D NRL+FPI S+ G+VIAFGGR++S ++ KYLNS E +LF K ++LY Sbjct: 181 K-----NLQDCLYNRLVFPICSATGRVIAFGGRSVSDRQTPKYLNSAENVLFKKRESLYG 235 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 AL +K R II VEGYMDVL L Q G+ NVV LGTA+TE LR + Sbjct: 236 LHLALASAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRYM 285 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 W + P IV+ DGDD G+ A+ K L L + G V FV+ G+DP G + Sbjct: 286 WDVVPEIVVWMDGDDAGVNASIKIAHLALSIMKSGQSVRFVISPPGKDPYDVCVSSGPDS 345 Query: 371 FEKLIVESLPLVDMLWKRETENRSFN-----TPDERAELEIHLKNCINHIKDQKLRYYYS 425 + L+ + L + +W E + P++ LE ++ + I+D + YY Sbjct: 346 AQALVEHAKLLSEFVWDHELARANIPSSGKIMPEQCMVLERRIQEYTSKIQDAHIAKYYR 405 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 +++ L ++ G G +AR +Q S RL SL + + +R Sbjct: 406 NFFYQQIKAL---QREQYHGKGGTSHGSARAIEQGLKSSRLGGVSL-QACAGENYQMR-- 459 Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLC 542 ++ ++ P +L + +++ A + + +Q L + + ++ + LC Sbjct: 460 -VIYAIVECPKLLYDVTVFEQFASLDFTG-GMQALQQHIVDIREMHGEELSKADLVRELC 517 Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 F ++L+ + ++ G + + DV + ++ +LS+Q EI++ Sbjct: 518 SRRADFEQVLRSIREKMSAIGCTFEVKDGSDGDVEKRARREWEKL----MLSKQLGEIQE 573 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 QI ++ +G + L EV ++ + Sbjct: 574 QIVKLRLEGRYDVALNLSEHAREVDDKLRSL 604 >gi|307726544|ref|YP_003909757.1| DNA primase [Burkholderia sp. CCGE1003] gi|307587069|gb|ADN60466.1| DNA primase [Burkholderia sp. CCGE1003] Length = 622 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 168/653 (25%), Positives = 282/653 (43%), Gaps = 56/653 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL +G SF E+V LA G+ +P + Sbjct: 57 HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGASGGYSPAASK 116 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 + T L +++ A D++ L+ YL +RG+ F LGYAPD + Sbjct: 117 AVTTALSDVMQTACDYYRKQLRG--APAAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ DG YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPNYRDDALVESGLVIVSEKSDGQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H + Sbjct: 284 LGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R +G AF + + ++PL + + + P+ +A Sbjct: 344 RFLFLPAEHDPDSYVREFGTAAFAEQVERAMPLSQFMLNEVLAGKELDQPEGKARALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F + R Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIA---------------AAA 448 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S K + + E L L+ +P + +E +L+ + + Sbjct: 449 RSAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508 Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +L + + +++ Q++ + T + L E++ + ++ Q Sbjct: 569 VGEELKAAILKMRYDAYCERLEQLSRQSRH--TPEEFAELAELNRKRADMKRQ 619 >gi|50954566|ref|YP_061854.1| DNA primase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951048|gb|AAT88749.1| DNA primase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 620 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 152/647 (23%), Positives = 258/647 (39%), Gaps = 46/647 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I+++IG YV G CPFHDE++PSF+ G Sbjct: 4 RIRQSDIEEVKARTNIADIIGDYVSLKPGG----VGSLKGLCPFHDERSPSFNVRPGVGR 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 Y+CF C GD FL L SF E+V+RLAA G L + +E + ++ Sbjct: 60 YHCFGCGEGGDVYEFLVKLDHVSFAEAVERLAARIGFQLHYEEGSGGPRESSGNRARILA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +FF +L +L ERG D+ A + F +GYAP S L HLR KGF+ Sbjct: 120 ANTAAEEFFAGTLGVPEADPGRRFLGERGFDAIAAQRFGVGYAPKSWDELTNHLRGKGFT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++ AGL+ YDRFR RL++PIR GQ I FG R L + ++ KYLN+PE Sbjct: 180 PDELLAAGLVSQ--RDRGVYDRFRGRLVWPIRDVTGQTIGFGARRLLEDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + + +++VEGY DV++ AG+ V++ Sbjct: 238 TPVYKKTQVLYGLDLAKRDIARD----------DQVVVVEGYTDVMACHLAGITTAVATC 287 Query: 299 GTALTEYQLRLLWKLSPR------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA ++ + ++ ++ FD D G +AA +A + + Sbjct: 288 GTAFGVDHIKTIRRVMVDDSSSGSVIFTFDPDAAGQKAAARAFGEERRFSA---QTYVAV 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A ++I P+ + + ++ E ++ + R + Sbjct: 345 GPDGLDPCDLRLAKGDDAVRRMIDGKKPMFEFMIRQVVERYDLDSVEGRTAALRAGAPIV 404 Query: 413 NHIKDQKLRYYYSQAIRDR----LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I+D + Y++ + L+ + + + + Sbjct: 405 ATIRDPASQNGYARELARLSGAELEDALRAVRSAQLSGRGEQQSDQSAGMTAVRESAPAA 464 Query: 469 SSLVKGKLSKKPSLR-EAALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDF 526 +V G P+ R E L+ L+ P + E+ + + N + + S Sbjct: 465 PIVVAGTAPADPTQRTERESLMVLLQLPGEVGSERAARALQVPFANPTHAVIRDAMASQL 524 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + Q + + L V AG + V G Sbjct: 525 ATLGQPGWVDRVQAEVPTAYAPTVNALAVGVLHAG---SDPGRYARSVLDGLID------ 575 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R L R+K + ++A+ A+ +AE L L + + ++ S Sbjct: 576 --RDLLREKAVLTARLARTDAQ-DAEHRRSLQIALASIDSERMRLRS 619 >gi|325518127|gb|EGC97913.1| DNA primase [Burkholderia sp. TJI49] Length = 625 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 275/657 (41%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------------DPKIE 108 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSMRGGGGGGGGGGDYPAP 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L ++ A D++ L+ A YL RG+ F LGYAPD Sbjct: 117 VSKSVATALSDVMSTACDYYRKQLRGATAA--IQYLKNRGLTGEIAARFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + R E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFPDYRDDALVEAGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 GAGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVIFSFDGDSAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGAEAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRL F++ R Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L TL+ HP + + E + +L++ + Sbjct: 449 AAPRQAPARSDRRRVTDSEKRALRTLVMHPRLASQLDDEQIATLRALPRIGELFAEVVEH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD L + E R+ Sbjct: 509 ARALGEGAEFRLLSDVLRTSSNSATYEEIFREILDYDENVRDLLLQNPEDETVSERQREQ 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 ERIAGEELQAAVLKVRYDACCDRLDRLARQ--SAFTPEELAELKHLNEQRTDMKRRL 623 >gi|307706484|ref|ZP_07643292.1| DNA primase [Streptococcus mitis SK321] gi|307618124|gb|EFN97283.1| DNA primase [Streptococcus mitis SK321] Length = 586 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 151/629 (24%), Positives = 262/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P Q ++ K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D +D E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LILNDYRLREDFSFDTPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|167743534|ref|ZP_02416308.1| DNA primase [Burkholderia pseudomallei 14] gi|254186159|ref|ZP_04892677.1| DNA primase [Burkholderia pseudomallei Pasteur 52237] gi|157933845|gb|EDO89515.1| DNA primase [Burkholderia pseudomallei Pasteur 52237] Length = 624 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 172/656 (26%), Positives = 273/656 (41%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 T L +++ A D++ L+ YL RG+ F LGYAPD +L Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSA---TSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 ++ + ++ YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVGAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRLQ F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP I E + +L+ + Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622 >gi|170719015|ref|YP_001784174.1| DNA primase [Haemophilus somnus 2336] gi|168827144|gb|ACA32515.1| DNA primase [Haemophilus somnus 2336] Length = 585 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 168/631 (26%), Positives = 284/631 (45%), Gaps = 56/631 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI D+L I +LI V ++ DY ACCPFH EKTPSF + K F Sbjct: 4 KIPHSFIDDILARTDIVDLIDSRVKLKKQGR-----DYQACCPFHHEKTPSFTVSPKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDL 117 Y+CF CH G+ +SFL F+E+++ LA++ G+ +P D K K + +L Sbjct: 59 YHCFGCHAHGNAISFLMEYDKLEFVEAIEELASLHGLEVPREKSTLDEKTRVSFKTKRNL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L++ F+ L + YL +RG+ I+ F++G++P + Sbjct: 119 YELMQEIAKFYQEQLTQNIPAQN--YLQQRGLSIEIIQRFQIGFSPQQSSFFIKKFATNR 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNS 236 +K+ + G++ S +DRFR R+ FPIR RG+VIAFGGR +++ KYLNS Sbjct: 177 EEIQKLFDVGMVNKR-ESGELFDRFRQRVTFPIRDRRGRVIAFGGRIITQSDNRPKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE++ +HKG LY F AL +S +++VEGYMDV++L Q GV V+ Sbjct: 236 PESVTYHKGYELYGLFEALQI----------NDSPEMLVIVEGYMDVVALAQFGVDYAVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T QL+L ++ + +I+ C+DGD G AA++A++ L L G ++ F+ L Sbjct: 286 SLGTATTTEQLQLAFRSTEQIICCYDGDRAGRDAAWRALENALPLLEDGRQLKFIFLPEK 345 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSFIR YGK FE I ++ L + L+ + F++ + +A+L I + Sbjct: 346 EDPDSFIRQYGKEGFEDYIHQAQSLSEFLFNTLSAKVDFSSTEGKAKLASLAIPLIQKVP 405 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR ++ + + + + + Sbjct: 406 GEMLRLSLRDMFGQKVGIFNPDKLDRLLSNQQQVEYKQKIPKTVKRTPM----------- 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ L+ + + + L+ ++ L+ + E + Sbjct: 455 --------RVLIALLLQNTNLAKIVPD-LSPLKVLQEPGLDLFEKIVILCRENVGIRAGQ 505 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I + + + + L+ L A D + + ++ +L+ ++ E Sbjct: 506 ILEHWRDTEYSQALEILATW----------EHAVDDDKIEQEFRETLIHLYKQLVDKRIE 555 Query: 597 EI--EKQIAQVTAKGEAEKTAILISILHEVH 625 E+ ++++ +T + E A L+S E Sbjct: 556 ELIGQERMVGLTNDEKIE-LAQLLSKKQEKK 585 >gi|281426143|ref|ZP_06257056.1| DNA primase [Prevotella oris F0302] gi|281399719|gb|EFB30550.1| DNA primase [Prevotella oris F0302] Length = 647 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 148/670 (22%), Positives = 281/670 (41%), Gaps = 69/670 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I +++ ++V + +N Y CPFH+EKTPSF+ + ++G Sbjct: 2 IDRLTVERIKDAANIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +SF+ ++ E+++ LA + + ++++ + + + Sbjct: 57 HCFGCGKGGNPISFIMEHEQMTYPEALRWLANKYHIEIKERELTDDEKREQSERESMFII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A+ +F L N D Y RG I FKLG+ R +L RQKGF Sbjct: 117 NEWASGYFEDILHNNVDGVAIGMQYFRTRGFRDDIIRKFKLGFDLPDRLTLGRTARQKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ G+ DR+ R+IFP G+V+ FGGR L KG + KY+N Sbjct: 177 QDEYLLKTGICYRN-ERGELVDRYSGRVIFPWIGISGKVVGFGGRVLDARTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK LY + A + K R + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + I L +DGD G+ AA + D+ L G + +LL Sbjct: 286 ANSGTALSIHQIHTLHRFTANITLLYDGDAAGIHAALRGTDM---LLQEGMNLKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPDSF R + F+ I + + +K + P +R+E + I+ + Sbjct: 343 NDDPDSFARKHTAEEFKDYIEQHATDF-IRFKTALLLDNETDPLKRSEAINSIVTSISMV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-------RHRDQKGPSQRLMQ 468 ++ LR Y R+ IT+ + R K + + Q Sbjct: 402 QNPILRDTYLHDCSQRIGINEATLITQMNNMIRDRKATGSMTPTAVQPTVTGTQPLQANQ 461 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--------------------- 507 +++ + S E +L +I H + ++ + D Sbjct: 462 NAIQSQSQANIESKAEQLMLQMIIKHGNRV--VFENIEDSNGKPLQLSIAEYFDYCLSAD 519 Query: 508 -IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + +++ ++ + ++ + + QL + + + Sbjct: 520 GLSFESPVYNQILKEVVEKGHDRSFDTEPYFVHH-----HDIHISQLAIHMTEERFKLSE 574 Query: 567 TEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 ++ D +A+ L R + + E+++QIA+ +A + L++ E+ Sbjct: 575 SQQVKSDNESLRNRAIHLMLDFRMEYVEKHLRELKQQIAKASA----DNLMPLMTEYKEM 630 Query: 625 HIQIHQIESQ 634 + + Q Sbjct: 631 TAIRNALAKQ 640 >gi|70726355|ref|YP_253269.1| DNA primase [Staphylococcus haemolyticus JCSC1435] gi|68447079|dbj|BAE04663.1| DNA primase [Staphylococcus haemolyticus JCSC1435] Length = 601 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 144/624 (23%), Positives = 264/624 (42%), Gaps = 34/624 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLI 118 +CF C G+ F + SF+E+V+ L + + + + + +I Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDLSFVEAVKELGERINISVDIGNSSDYTSQIASNDLTMI 115 Query: 119 RLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ +++ ++ LK + YL +RG I+ +GYAP+ + + L+QKG Sbjct: 116 EMHELMHEYYQYALLKTVEGEEALNYLTKRGFTEELIKSRGIGYAPNHTHFCHDFLQQKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + E EAGLL + + + +DRFR+R++FP+ +++G+++ + GRT + KYLNSP Sbjct: 176 YDIELAYEAGLLSRNEENFSYFDRFRDRIMFPLNNAQGRIVGYSGRT-YNNQEPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K + LYN A +++K + IL+EG+MDV+ +G++ V++S Sbjct: 235 ETPIFQKRRLLYNLDNARKHIRK----------NDEAILLEGFMDVIKSDSSGLKPVIAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTA+++ + +L KL+ I L FDGD G A I L G V V L + Sbjct: 285 MGTAISDEHITVLKKLTSHITLMFDGDFAGQEAT---IKTGQHLLQQGFNVFVVQLPKDM 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I YG F + + + + ++ N + I + Sbjct: 342 DPDEYITKYGNEKFLEYVNNEKKSFIIYKVNKHKDEIANNDLAYERYLKEVTQDIALMNS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Q L+ + + + +Y D + + +S Sbjct: 402 QILQNKIIKDVAHLFNVDSNTLNSNVLNQQQYIPSEPYINDYQSYDIEIQNNSNNLFSHL 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K E ALL +N + +++L +DN ++++S L + E + ++ Sbjct: 462 SKHESAERALLKHFMNDKDLFLNYHKQLESDDFDNQFFKRIYSVLEDFYAENDSYTISDM 521 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + LD + + Y + K L E Sbjct: 522 ILYTDNDNLRDAIIALDNY--------DINQEPYDSEIEDYMNVINESKYGDTLE----E 569 Query: 598 IEKQIAQVTAKGEAEKTAILISIL 621 + ++ + + G+ E + + Sbjct: 570 LNHKLREASRLGDVELQKYYLEQI 593 >gi|289550667|ref|YP_003471571.1| DNA primase [Staphylococcus lugdunensis HKU09-01] gi|289180199|gb|ADC87444.1| DNA primase [Staphylococcus lugdunensis HKU09-01] Length = 604 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 262/634 (41%), Gaps = 37/634 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-KIEKKEKIQTDLIR 119 +CF C G+ F + SF+E+V+ L A + + + P + + +I Sbjct: 56 ICHCFGCKKGGNVFQFTQDIKDISFVEAVKELGARVNINVDIGTPSETPQIASDDLKMIE 115 Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+ ++ ++ LK + YL +RG I+ +GYAPD+ + + L + + Sbjct: 116 MHELMQTYYQYALLKTVEGEEALNYLKQRGFTDELIQQRGIGYAPDNAHFCLDFLTKNDY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E EAGLL + + + YDRFR+R++FP+ +++G+++ + GRT + + KYLNSPE Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRIVGYSGRT-YRNQEPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + LYN A ++K + +IL+EG+MDV+ AG+++VV+S+ Sbjct: 235 TPIFQKRRLLYNLDYARKRIRK----------NDEVILLEGFMDVIKSDAAGLKHVVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTAL++ + L KL+ + L FDGD G AA K + L G V + L D Sbjct: 285 GTALSQEHITFLKKLTSNVTLMFDGDFAGREAALKTGQV---LLQQGLNVYIIQLPNDMD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I YGK F + + + ++ + + ++ Sbjct: 342 PDEYIVKYGKEEFLNFVATEKKSFIVFKYKTKQDEIQHNDLAYERYLKEAIQDVAFVQSN 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+ Q + + E + Y N +Q + + Sbjct: 402 ILKNKIVQDVAGVFNIEANRLNNEIAQQSHSITEYDYDNYYSGAYFHDNQPMHAPQIDNF 461 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E LL +N + + N ++++ L + E + Sbjct: 462 NHLNKREKAERGLLKHFMNDKDTFLNYAANINSQLFSNPSFKQIFEILKDFYAENDNYHI 521 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + Q E++ LD + N+ + +A Sbjct: 522 SDFIQYTDSSDLREMMISLDNY-----------DLNLEPFDHEIEDYIATLMENND-EDS 569 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + G+ + + ++ + + Q Sbjct: 570 IEILNHKLNEAQRTGDIDMVKYYLQMIVQKNQQR 603 >gi|241896071|ref|ZP_04783367.1| DNA primase [Weissella paramesenteroides ATCC 33313] gi|241870671|gb|EER74422.1| DNA primase [Weissella paramesenteroides ATCC 33313] Length = 621 Score = 346 bits (887), Expect = 8e-93, Method: Composition-based stats. Identities = 146/644 (22%), Positives = 279/644 (43%), Gaps = 47/644 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ ++++ + I +++ YV ++ N + CPFH+E+TPSF N+ K Sbjct: 3 RIPQNLVEEIRERVNIVDVVSPYVQLKKQGRNL-----FGKCPFHEERTPSFSVNEEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDLI 118 ++CFSC G+ SFL + SF ++V ++A AGV L + + + + L Sbjct: 58 FHCFSCGRGGNVFSFLMEIENLSFPQAVAKVAPQAGVDLDEAYLDNDQNVQVDPEIKALR 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E AT +HH L A + YL RG+D I+ F LGYAP+ L ++ + + Sbjct: 118 ELYEEATKLYHHLLVNTASGEEALSYLTSRGLDEKTIDAFMLGYAPEG-NILYDYFQTQK 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNS 236 + + ++ L ++ + + +DRF NR++F IR S G IAF GR L + KY+NS Sbjct: 177 VDYQLLRKSELFVE-WSDGSLHDRFANRVLFTIRDSAGHPIAFSGRKLTQNDDEPKYINS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE++LF+K L+N A + ++K +IL EG+MDV++ QAGVQN V+ Sbjct: 236 PESLLFNKSAELFNLDLAKDTIKKK----------KHVILFEGFMDVIAAFQAGVQNGVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GT+LT Q++ L +++ +I + +D D G +A +A+DL+ + + Sbjct: 286 SMGTSLTSEQIQRLSRMTDKISISYDADMAGQKATKRALDLITQQGR--LSAQIIHIPDN 343 Query: 357 EDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPD ++R TAF + L+ V + +R+ + E I + Sbjct: 344 QDPDEYLRSNDATAFNQVLVHNVEDPVTFNLRYLQIDRNLHNQTELFSYISDALVVIATV 403 Query: 416 KDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K+ +R + + + + LQ + + + N +++ + Sbjct: 404 KEPVIREQFLRQLANEFDLSYEALQDQIRPILLQKQAQRSSGATNTESGNRQKARHQSFP 463 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSD 525 + + K + E LL ++ + + A+ + + + L+ + Sbjct: 464 DNQIIKKSVTRIEKAEQILLAWMLRDNDVWLQVTNR-ANFSFQDVPYETLYMIAMAYREE 522 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + +Q + + +L L+ + + R+ + + + Sbjct: 523 YQQQPATDMAAFMDYVQKPELTRILASLEEIDSELFM-----------DREQVSEYIRVI 571 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 L + ++ + I + + + A L V Q Sbjct: 572 SDEAPLEEKIRQLSRDIKEANQLHDHARIAQLSVEYMTVLKQKQ 615 >gi|15903022|ref|NP_358572.1| DNA primase [Streptococcus pneumoniae R6] gi|15458592|gb|AAK99782.1| DNA primase [Streptococcus pneumoniae R6] Length = 591 Score = 346 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFSVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 122 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T+ Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L L + Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLHD-LLGQYGN------------ 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591 >gi|288957898|ref|YP_003448239.1| DNA primase [Azospirillum sp. B510] gi|288910206|dbj|BAI71695.1| DNA primase [Azospirillum sp. B510] Length = 950 Score = 346 bits (886), Expect = 8e-93, Method: Composition-based stats. Identities = 181/576 (31%), Positives = 287/576 (49%), Gaps = 28/576 (4%) Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F+ F E+V+ LA AG+P+P + ++ + + L L+E Sbjct: 373 CFGCGAHGDIIGFVMRHDNLGFPEAVEHLAGEAGLPVPRPTEEDRQRYERRKTLHDLVEQ 432 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 AT +F L + + Y RG+D I F+LGYAP +LR HL ++GFS++ + Sbjct: 433 ATRWFEQQLHGSAGRAGLDYFLRRGLDGDTIARFRLGYAPGDSNALRTHLGKQGFSDDDM 492 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 I AGLL D+ + Y FRNR++FP+ RGQV+AFGGR L KY+N+ +T LFH Sbjct: 493 INAGLLKRPDDGRSPYSFFRNRVMFPVTDRRGQVVAFGGRILEGD-GPKYVNTADTPLFH 551 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG LY A +I+ EGYMDV++L +AG + V+ LGTALT Sbjct: 552 KGTLLYGLSRARQAAA----------DGKPVIVAEGYMDVIALVRAGFEGAVAPLGTALT 601 Query: 304 EYQLRLLWKLSP----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 E Q++ LWKL P LCFDGD+ G RAA++A++ +L HL PG L GEDP Sbjct: 602 ETQVQELWKLIPAAEKVPFLCFDGDNAGRRAAWRAVERLLPHLAPGQSARVAFLPEGEDP 661 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS IR G A ++ ++PL D LW+ E+E R +TP+ +A ++ L+ ++ I D+ Sbjct: 662 DSLIRAQGPKAMGAVLETAIPLSDALWRMESEGRPTDTPEAKAAVKAALEARVSTIADRD 721 Query: 420 LRYYYSQAIRDRLQQLFQKYITEH--------SGYGRYWKKNARHRDQKGPSQRLMQSSL 471 ++ +Y +R R+ + F + G GR+ + RH + Sbjct: 722 VQSFYRTEMRRRVDEAFAPARPAYNRGPWVPGQGRGRFGEAPRRHVPGTPGRLTSKPAGE 781 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 +G++S+ S+RE LL TLINHP + E + L + + + EL+KL + ++ Sbjct: 782 GRGRVSRLASMRERILLATLINHPDLFGELAEPLGLLPFGDPELEKLRWAVIECLSDEGN 841 Query: 532 ----FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + L G ++ L + + +A+ + R+G+ A Sbjct: 842 HDSALDADALCRHLSSAGHETMVGALLSESTYNHAGFSRPDASSEEARRGWWPAWRHLHH 901 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 R+L E + + + T + + A L + + Sbjct: 902 ERVLD-DLREAKAALKRDTNEANLARVAALQQEVIK 936 Score = 110 bits (274), Expect = 8e-22, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 5/64 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+++L + +S ++ + + R +Y A CPFH+EK+PSF+ ND KG Sbjct: 1 MAFPPQFLEELRTRLTLSEVVSKRLRLIRAGR-----EYKAPCPFHNEKSPSFYVNDQKG 55 Query: 61 FYYC 64 F++C Sbjct: 56 FFHC 59 >gi|327382533|gb|AEA54009.1| DNA primase [Lactobacillus casei LC2W] gi|327385730|gb|AEA57204.1| DNA primase [Lactobacillus casei BD-II] Length = 595 Score = 346 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 267/633 (42%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+ K + Sbjct: 2 IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++ AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVGDFAGMPLDVQVGHAAPVDPEISKQQHILQ 116 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D FHH L N + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ S GQVI F GR LSK ++ KYLNSPET Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G AF+ + L + + N + I I + Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFMLQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + D + A + P + + Sbjct: 404 RAVYVKQLADTTGVPESALNQSL-----PAPQQAVPQQSSAPVSYQTAPVNQPVRPIDRY 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q A + Q L++ EQ R Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--AAFTFPAPHFQTLFTGWLDFLHEQPDGELAGFLDR 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + QV TEA I ++ Q A + + + I++ Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595 >gi|182684178|ref|YP_001835925.1| DNA primase [Streptococcus pneumoniae CGSP14] gi|182629512|gb|ACB90460.1| DNA primase [Streptococcus pneumoniae CGSP14] Length = 591 Score = 346 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 122 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591 >gi|254994911|ref|ZP_05277101.1| DNA primase (dnaG) [Anaplasma marginale str. Mississippi] Length = 606 Score = 346 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 290/631 (45%), Gaps = 51/631 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + + +++ + + +R +N Y CPFH EKTPSFH N S +YCF C V Sbjct: 14 VREKVRLLDVVSKKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVH 69 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F+S + G SF E+++ LA + GV LP + E L L++ A +F Sbjct: 70 GDVVQFVSDIDGLSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVE 124 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L ++ YL RGID I F+LGY P S ++ S EK+ +AGLL Sbjct: 125 QL--SKSPTALSYLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLT 180 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 D NRL+FPI S+ G+VIAFGGR++S S KYLNS E LF K ++LY Sbjct: 181 K-----NFQDCLYNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYG 235 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 AL +K R II VEGYMDVL L Q G+ NVV LGTA+TE LR + Sbjct: 236 LHLALAAAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHM 285 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 W + P +V+ DGD G+ A+ K L L + G+ + FV +G+DP G Sbjct: 286 WDIVPEVVVWMDGDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDT 345 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYS 425 + L+ + L + +W E + + P++ LE ++ + I+D + YY Sbjct: 346 AKGLVEHAKLLSEFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYK 405 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 +++ L ++ GR + ++G + ++ + +R Sbjct: 406 SFFYQQIKALQREQ-----YNGRGAPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR-- 458 Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLC 542 ++ T++ P +L + +++ A + + + +++ L + ++ LC Sbjct: 459 -VIYTIVECPRLLYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELC 516 Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 F L+ + ++ G T + DV + ++ +LSRQ EI++ Sbjct: 517 SRRADFEPALRSIQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQE 572 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 QI ++ +G + L EV ++ + Sbjct: 573 QIVKLRLEGRYDIALNLSEHAKEVDDRLRSL 603 >gi|298502916|ref|YP_003724856.1| DNA primase [Streptococcus pneumoniae TCH8431/19A] gi|298238511|gb|ADI69642.1| DNA primase [Streptococcus pneumoniae TCH8431/19A] Length = 591 Score = 346 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 122 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ QAG++N V+S+GT Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 406 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591 >gi|116515597|ref|YP_816434.1| DNA primase [Streptococcus pneumoniae D39] gi|116076173|gb|ABJ53893.1| DNA primase [Streptococcus pneumoniae D39] Length = 586 Score = 346 bits (886), Expect = 9e-93, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFSVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T+ Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLHD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|323466387|gb|ADX70074.1| DNA primase [Lactobacillus helveticus H10] Length = 614 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 159/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 7 RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESVQR+A A + +P + ++R+ Sbjct: 62 FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 119 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +DS+ +E FK+GYAP L +LR KG+ + Sbjct: 120 KDAEDFYHRVLLTTKAGERGMQYAKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + +DRFR+RL+FP+ G I F GR +S ++ KY+NSPET Sbjct: 180 DDLAQSGLFVQSQDG-RLFDRFRDRLMFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + S ++L EGYMDV++ +AG+++ V+S+G Sbjct: 239 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 289 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R YG ++ + +L D KR + + + E+ I+H+K+ Sbjct: 347 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470 + Y + + + R + H + QS+ Sbjct: 407 EQDMYLKKLSGSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 466 Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L + + ++ LL I+ Q + + + + + L Sbjct: 467 SVETLPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 524 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + E+ L + DA L + I ++ + Sbjct: 525 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 571 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + R + Q E++ Q+ + + +KT + + E+ + Sbjct: 572 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 613 >gi|323142245|ref|ZP_08077079.1| DNA primase [Phascolarctobacterium sp. YIT 12067] gi|322413308|gb|EFY04193.1| DNA primase [Phascolarctobacterium sp. YIT 12067] Length = 593 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 157/634 (24%), Positives = 281/634 (44%), Gaps = 51/634 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +F + + + +I YV ++ N YW CCPFH EKTPSF N K +YC Sbjct: 6 ENFKEQVRSTADMVEIISGYVPLKKKGQN-----YWGCCPFHGEKTPSFSVNPGKSMFYC 60 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122 F CH GD F+ + CSF+++++ LA G+P+P + +EK + + E Sbjct: 61 FGCHEGGDIFKFIMKIENCSFMDALKLLAGRYGIPIPEKQKTAAEIAREKQRDSIYSANE 120 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A+ FF L K A + YL RGI I F +GYA ++ +L L ++G + Sbjct: 121 LASKFFQACLTKTAYGEPALAYLAGRGIGKEIIAGFGIGYALNNFTALVSSLAKRGCQPQ 180 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AGL G YD+FRNR+I PIR +RG+++ FGGR L + KYLN+ ET Sbjct: 181 VLEAAGLAARG--RDGYYDKFRNRVIIPIRDARGRIVGFGGRVL-DNSTPKYLNTAETQW 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + L+ AL ++KS R ++VEGYMD +SL AG NVV+S+GTA Sbjct: 238 FNKRRLLFGLDIALKAIRKSGRA----------VVVEGYMDAISLHAAGFDNVVASMGTA 287 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 ++ Q +LL +L+ ++ C+D D G +A+ +A+ + G +V + G+DPD Sbjct: 288 FSQEQAKLLQRLADEVIFCYDSDSAGRKASVRAVSIAR---EAGLKVRIAGVPDGKDPDE 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +G AF +++ + +D + + E ++ + +++ Sbjct: 345 YVRQHGSAAFAQVLAAAQNGIDFQIDETILQNNIANLAGKVEAVSNILPFLLECQNEIEA 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + RL E+ R + + P ++ +L + Sbjct: 405 SEHIRRLAQRLTIDEGLIAEEYRKAARRGGRQQTGQPTVIPEEKSAGIGQQAEELLLRLL 464 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L + + E E+ + +++ L +L+ L + ++++ L Sbjct: 465 LEQPQ----------LCDECRAEVKETGFEDAVLAQLFDRLCEL---GTAYTTDKLNNVL 511 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L + L Q+ D+ + Q L +R R L ++ E+ Sbjct: 512 DDASQTALARILAHQL------------PEGDMDKLMQDCLRQMRRLR-LEKEYEKHRLL 558 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + E+ + + +I ++ + Sbjct: 559 ADEYERSAD-ERFLSELMESQRIKNEIKKLYGNQ 591 >gi|225861038|ref|YP_002742547.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14] gi|225727518|gb|ACO23369.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14] gi|327389373|gb|EGE87718.1| DNA primase [Streptococcus pneumoniae GA04375] gi|332201554|gb|EGJ15624.1| DNA primase [Streptococcus pneumoniae GA47368] Length = 586 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 146/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR ++ KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTYKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|149013171|ref|ZP_01833988.1| DNA primase [Streptococcus pneumoniae SP19-BS75] gi|225854568|ref|YP_002736080.1| DNA primase [Streptococcus pneumoniae JJA] gi|303256089|ref|ZP_07342109.1| DNA primase [Streptococcus pneumoniae BS455] gi|303260610|ref|ZP_07346575.1| DNA primase [Streptococcus pneumoniae SP-BS293] gi|303263022|ref|ZP_07348955.1| DNA primase [Streptococcus pneumoniae SP14-BS292] gi|303266911|ref|ZP_07352788.1| DNA primase [Streptococcus pneumoniae BS457] gi|303269115|ref|ZP_07354895.1| DNA primase [Streptococcus pneumoniae BS458] gi|147763022|gb|EDK69966.1| DNA primase [Streptococcus pneumoniae SP19-BS75] gi|225722898|gb|ACO18751.1| DNA primase [Streptococcus pneumoniae JJA] gi|301802036|emb|CBW34766.1| DNA primase [Streptococcus pneumoniae INV200] gi|302596936|gb|EFL64062.1| DNA primase [Streptococcus pneumoniae BS455] gi|302635849|gb|EFL66351.1| DNA primase [Streptococcus pneumoniae SP14-BS292] gi|302638260|gb|EFL68730.1| DNA primase [Streptococcus pneumoniae SP-BS293] gi|302641364|gb|EFL71731.1| DNA primase [Streptococcus pneumoniae BS458] gi|302643544|gb|EFL73814.1| DNA primase [Streptococcus pneumoniae BS457] Length = 586 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|187921408|ref|YP_001890440.1| DNA primase [Burkholderia phytofirmans PsJN] gi|187719846|gb|ACD21069.1| DNA primase [Burkholderia phytofirmans PsJN] Length = 623 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 169/654 (25%), Positives = 277/654 (42%), Gaps = 57/654 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEASPGYGGGGSGGGYAPAAS 116 Query: 115 ----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-- 168 T L +++ A DF+ L++ YL +RG+ F LGYAPD + Sbjct: 117 KAVTTALSDVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLE 174 Query: 169 -LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 PAFPNYRDDALVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDG 234 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALA 283 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 284 QLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRT 343 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L DPDS++R YG AF + + ++PL + + + P+ RA Sbjct: 344 IRFLFLPSEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGRARALFD 403 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + LR DRL F + R +K Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG 463 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 E L L+ +P + +E +L+ + + Sbjct: 464 ---------------IEEKTLRNLVMYPRTVGVLDEEAEQALLTVTRHGELFEEVTTHAR 508 Query: 528 EQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQ 580 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 ALGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQER 568 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +L + + ++ Q++ + T + L E++ + ++ Q Sbjct: 569 IVGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKRQ 620 >gi|299141905|ref|ZP_07035040.1| DNA primase [Prevotella oris C735] gi|298576756|gb|EFI48627.1| DNA primase [Prevotella oris C735] Length = 647 Score = 346 bits (886), Expect = 1e-92, Method: Composition-based stats. Identities = 148/670 (22%), Positives = 281/670 (41%), Gaps = 69/670 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I +++ ++V + +N Y CPFH+EKTPSF+ + ++G Sbjct: 2 IDRLTVERIKDAANIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +SF+ ++ E+++ LA + + ++++ + + + Sbjct: 57 HCFGCGKGGNPISFIMEHEQMTYPEALRWLANKYHIEIKERELTDDEKREQSERESMFII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E +++F L N D Y RG I FKLG+ R +L RQKGF Sbjct: 117 NEWVSNYFEDILHNNDDGVAIGMQYFRTRGFRDDIIRKFKLGFDLPDRLTLGRTARQKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ G+ DR+ R+IFP G+V+ FGGR L KG + KY+N Sbjct: 177 QDEYLLKTGICYRN-ERGELVDRYSGRVIFPWIGISGKVVGFGGRVLDARTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK LY + A + K+ R + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKADR----------VYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + I L +DGD G+ AA + D+ L G + +LL Sbjct: 286 ANSGTALSIHQIHTLHRFTANITLLYDGDAAGIHAALRGTDM---LLQEGMNLKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +DPDSF R + F+ I + + +K P +R+E + I+ + Sbjct: 343 NDDPDSFARKHTAEEFKDYIEQHATDF-IRFKTALLLDKETDPLKRSEAINSIVTSISMV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-------RHRDQKGPSQRLMQ 468 ++ LR Y R+ IT+ + R K + + Q Sbjct: 402 QNPILRDTYLHDCSQRIGINEATLITQMNNMIRDRKATGSMTPTAVQSTATGTQPLQANQ 461 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--------------------- 507 S++ + S E +L +I H + ++ + D Sbjct: 462 SAIQSQSQANIESKAEQLMLQMIIKHGNRV--VFENIEDSDGKPLQLSIAEYFDYCLSAD 519 Query: 508 -IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + +++ ++ + ++ + + QL + + + Sbjct: 520 GLSFESPVYNQILKEVVEKGHDRSFDTEPYFVHH-----HDIHISQLAIHMTEERFKLSE 574 Query: 567 TEANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 ++ D +A+ L R + + E+++QIA+ +A + L++ E+ Sbjct: 575 SQQVKSDNESLRNRAIHLMLDFRMEYVEKHLRELKQQIAKASA----DNLMPLMTEYKEM 630 Query: 625 HIQIHQIESQ 634 + + Q Sbjct: 631 TAIRNALAKQ 640 >gi|148985043|ref|ZP_01818286.1| DNA primase [Streptococcus pneumoniae SP3-BS71] gi|147922741|gb|EDK73858.1| DNA primase [Streptococcus pneumoniae SP3-BS71] gi|301800045|emb|CBW32639.1| DNA primase [Streptococcus pneumoniae OXC141] Length = 586 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ QAG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFTFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|33862914|ref|NP_894474.1| DNA primase [Prochlorococcus marinus str. MIT 9313] gi|33634830|emb|CAE20816.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT 9313] Length = 684 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 173/668 (25%), Positives = 291/668 (43%), Gaps = 67/668 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ V+ +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F L+ Y ++RG+ +E F+LGYAP+ L +HL+Q Sbjct: 120 HRALALAAGWFRGQLRTPVGASALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S E + AGL++ YDRFR+R++ PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AGV N V Sbjct: 239 SPETDVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNSV 288 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ + + S RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ +S +D ++ E R + D+ + L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R S Sbjct: 409 GKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460 Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + + EA +L + NH A ++ + ++ + + LW+ + Sbjct: 461 QPGEASQRERSEAEILRLYLHCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETN 520 Query: 530 KYFLPEEIHQR-------LCERGFGELLKQ---LDRQVRDAGLWSATTE-----ANIVDV 574 E R L + LL L+ A L A + Sbjct: 521 LGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALVARLTPLLEPGEVHLAAMAKP 580 Query: 575 RQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + A +R + L R + E +E+ IA + + + T + + Sbjct: 581 LLQLRGTAAALERQKSLKRCRHLLEAWGGQRLETLERCIAALIQEERQQPTESV-----D 635 Query: 624 VHIQIHQI 631 + +I + Sbjct: 636 MEKRIEAM 643 >gi|298230105|ref|ZP_06963786.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255543|ref|ZP_06979129.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19A] Length = 586 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ QAG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYQAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|124023293|ref|YP_001017600.1| DNA primase [Prochlorococcus marinus str. MIT 9303] gi|123963579|gb|ABM78335.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT 9303] Length = 684 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 171/674 (25%), Positives = 299/674 (44%), Gaps = 64/674 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ V+ +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFGDVVLELARKYQLPVETVEGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A +F L+ Y ++RG+ +E F+LGYAP+ L +HL+Q Sbjct: 120 HRALALAAGWFRGQLRTPVGANALNYLTEKRGLSEVTLESFELGYAPEQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G S E + AGL++ YDRFR+R++ PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLSAELLEAAGLVVARKGGGGFYDRFRHRVMVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AGV N V Sbjct: 239 SPETDVFEKGKHLFGLDRAANAIRKDDRA----------VVVEGYFDVIALHAAGVTNSV 288 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ + + S RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQICRCSEGKRIVLNFDADGAGVRAANRAIGEVEQLALQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ +S +D ++ E R + D+ + L + Sbjct: 349 LPSGKDPDEFLKDHGAGDYRALLDQSPLWLDWQIQQVLEGRDLSQADQFQQAVSGLVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R S Sbjct: 409 GKLPQSAVRTHYLQQVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460 Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-- 527 + + + EA +L + NH A ++ + ++ + + LW+ + Sbjct: 461 QPGEASQRERSEAEILRLYLHCSNHRAAIRRELRQRELEDFALQHHRLLWAAITDLEETN 520 Query: 528 --------------EQKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 E+ + L ++ L+ +L + + A Sbjct: 521 LGAGRLEAISRGTDSGHDLEDIELPRLLTDQLLLENSALVARLTPLLEPGEVQLAAMAKP 580 Query: 571 IVDVR--QGYQQALALYKRFRLL-----SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 ++ +R + KR R L S++ E +E+ IA + + + T + + Sbjct: 581 LLQLRGTTAALERQKSLKRCRHLLEAWGSQRLETLERCIAALIEEERQQPTESVDMEMR- 639 Query: 624 VHIQIHQIESQEAM 637 + ++ + +A+ Sbjct: 640 IEAMFEEL-NSDAL 652 >gi|226324576|ref|ZP_03800094.1| hypothetical protein COPCOM_02360 [Coprococcus comes ATCC 27758] gi|225207024|gb|EEG89378.1| hypothetical protein COPCOM_02360 [Coprococcus comes ATCC 27758] Length = 463 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 136/474 (28%), Positives = 223/474 (47%), Gaps = 24/474 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+++ I ++I YV ++ + Y+ CPFH EK+PSF + K Sbjct: 1 MYYSDEIIEEVRSKNDIVDVISGYVKLKKQGS-----SYFGLCPFHSEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 YYCF C G+ +F+ SF+E+++ LA AGV LP + +++ ++ L+ Sbjct: 56 MYYCFGCGAGGNVFTFIMEYENYSFVEALKFLAQRAGVELPQEEYSKEAKERADTRSALL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +++ LK ++ YL R + I F LGY+ L +L+ KG+ Sbjct: 116 EMNKLAAKYYYAQLKTEGGRQAREYLQNRQLSQETITAFGLGYSSKYSDDLFRYLKMKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SEE II+AGL ++ D YD+F NR++FPI +VI FGGR + KYLNSPE Sbjct: 176 SEEMIIKAGL-VNVDEKHGVYDKFWNRVMFPIMDVNNRVIGFGGRVM-GDGKPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K +NLY A + + I+ EGYMDV+SL QAG N V+SL Sbjct: 234 TLIFDKSRNLYGLHRAR------------TSRKPYFIVCEGYMDVISLHQAGFTNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L+ + + L +D D+ G +AA +A + G + + +D Sbjct: 282 GTALTAGHAALIKRYVNEVYLTYDSDEAGTKAALRAAPI---LREAGVTTRVIRMEPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G AFE+ I ++ + + N P+ + E + +++ Sbjct: 339 PDEFIKNLGAEAFEERIRKARNSFMFGLEMLEKGYDLNAPEGKTEFLREAARRLARFEEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 R Y +A+ +++ A + ++ +V Sbjct: 399 IERDNYIEAVAKTYHVGYEELKKLVVKVAVQSGMAAPATKPRQTIRQETPKRMV 452 >gi|53716430|ref|YP_105145.1| DNA primase [Burkholderia mallei ATCC 23344] gi|67643220|ref|ZP_00441968.1| DNA primase [Burkholderia mallei GB8 horse 4] gi|121596975|ref|YP_991114.1| DNA primase [Burkholderia mallei SAVP1] gi|126443568|ref|YP_001063519.1| DNA primase [Burkholderia pseudomallei 668] gi|126456458|ref|YP_001076417.1| DNA primase [Burkholderia pseudomallei 1106a] gi|134278097|ref|ZP_01764811.1| DNA primase [Burkholderia pseudomallei 305] gi|167000272|ref|ZP_02266091.1| DNA primase [Burkholderia mallei PRL-20] gi|167829082|ref|ZP_02460553.1| DNA primase [Burkholderia pseudomallei 9] gi|167850559|ref|ZP_02476067.1| DNA primase [Burkholderia pseudomallei B7210] gi|167907495|ref|ZP_02494700.1| DNA primase [Burkholderia pseudomallei NCTC 13177] gi|226195730|ref|ZP_03791317.1| DNA primase [Burkholderia pseudomallei Pakistan 9] gi|237510220|ref|ZP_04522935.1| DNA primase [Burkholderia pseudomallei MSHR346] gi|242312000|ref|ZP_04811017.1| DNA primase [Burkholderia pseudomallei 1106b] gi|254177320|ref|ZP_04883976.1| DNA primase [Burkholderia mallei ATCC 10399] gi|254184930|ref|ZP_04891519.1| DNA primase [Burkholderia pseudomallei 1655] gi|254203083|ref|ZP_04909445.1| DNA primase [Burkholderia mallei FMH] gi|254208416|ref|ZP_04914765.1| DNA primase [Burkholderia mallei JHU] gi|52422400|gb|AAU45970.1| DNA primase [Burkholderia mallei ATCC 23344] gi|121224773|gb|ABM48304.1| DNA primase [Burkholderia mallei SAVP1] gi|126223059|gb|ABN86564.1| DNA primase [Burkholderia pseudomallei 668] gi|126230226|gb|ABN93639.1| DNA primase [Burkholderia pseudomallei 1106a] gi|134249881|gb|EBA49961.1| DNA primase [Burkholderia pseudomallei 305] gi|147746128|gb|EDK53206.1| DNA primase [Burkholderia mallei FMH] gi|147751103|gb|EDK58171.1| DNA primase [Burkholderia mallei JHU] gi|160698360|gb|EDP88330.1| DNA primase [Burkholderia mallei ATCC 10399] gi|184215522|gb|EDU12503.1| DNA primase [Burkholderia pseudomallei 1655] gi|225932215|gb|EEH28215.1| DNA primase [Burkholderia pseudomallei Pakistan 9] gi|235002425|gb|EEP51849.1| DNA primase [Burkholderia pseudomallei MSHR346] gi|238524505|gb|EEP87938.1| DNA primase [Burkholderia mallei GB8 horse 4] gi|242135239|gb|EES21642.1| DNA primase [Burkholderia pseudomallei 1106b] gi|243063760|gb|EES45946.1| DNA primase [Burkholderia mallei PRL-20] Length = 624 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRLQ F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP I E + +L+ + Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622 >gi|56416702|ref|YP_153776.1| DNA primase [Anaplasma marginale str. St. Maries] gi|222475068|ref|YP_002563483.1| DNA primase (dnaG) [Anaplasma marginale str. Florida] gi|56387934|gb|AAV86521.1| DNA primase [Anaplasma marginale str. St. Maries] gi|222419204|gb|ACM49227.1| DNA primase (dnaG) [Anaplasma marginale str. Florida] Length = 612 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 177/631 (28%), Positives = 290/631 (45%), Gaps = 51/631 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + + +++ + + +R +N Y CPFH EKTPSFH N S +YCF C V Sbjct: 20 VREKVRLLDVVSKKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVH 75 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F+S + G SF E+++ LA + GV LP + E L L++ A +F Sbjct: 76 GDVVQFVSDIDGLSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVE 130 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L ++ YL RGID I F+LGY P S ++ S EK+ +AGLL Sbjct: 131 QL--SKSPTALSYLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLT 186 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 D NRL+FPI S+ G+VIAFGGR++S S KYLNS E LF K ++LY Sbjct: 187 K-----NFQDCLYNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYG 241 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 AL +K R II VEGYMDVL L Q G+ NVV LGTA+TE LR + Sbjct: 242 LHLALAAAKKLGR----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHM 291 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 W + P +V+ DGD G+ A+ K L L + G+ + FV +G+DP G Sbjct: 292 WDIVPEVVVWMDGDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDT 351 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYS 425 + L+ + L + +W E + + P++ LE ++ + I+D + YY Sbjct: 352 AKGLVEHAKLLSEFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYK 411 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 +++ L ++ GR + ++G + ++ + +R Sbjct: 412 SFFYQQIKALQREQ-----YNGRGAPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR-- 464 Query: 486 ALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLC 542 ++ T++ P +L + +++ A + + + +++ L + ++ LC Sbjct: 465 -VIYTIVECPRLLYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELC 522 Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 F L+ + ++ G T + DV + ++ +LSRQ EI++ Sbjct: 523 SRRADFEPALRSIQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQE 578 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 QI ++ +G + L EV ++ + Sbjct: 579 QIVKLRLEGRYDIALNLSEHAKEVDDRLRSL 609 >gi|76819088|ref|YP_335992.1| DNA primase [Burkholderia pseudomallei 1710b] gi|167899152|ref|ZP_02486553.1| DNA primase [Burkholderia pseudomallei 7894] gi|167915834|ref|ZP_02502925.1| DNA primase [Burkholderia pseudomallei 112] gi|167923673|ref|ZP_02510764.1| DNA primase [Burkholderia pseudomallei BCC215] gi|217422647|ref|ZP_03454150.1| DNA primase [Burkholderia pseudomallei 576] gi|254194020|ref|ZP_04900452.1| DNA primase [Burkholderia pseudomallei S13] gi|254263841|ref|ZP_04954706.1| DNA primase [Burkholderia pseudomallei 1710a] gi|254301212|ref|ZP_04968656.1| DNA primase [Burkholderia pseudomallei 406e] gi|76583561|gb|ABA53035.1| DNA primase [Burkholderia pseudomallei 1710b] gi|157811303|gb|EDO88473.1| DNA primase [Burkholderia pseudomallei 406e] gi|169650771|gb|EDS83464.1| DNA primase [Burkholderia pseudomallei S13] gi|217394878|gb|EEC34897.1| DNA primase [Burkholderia pseudomallei 576] gi|254214843|gb|EET04228.1| DNA primase [Burkholderia pseudomallei 1710a] Length = 624 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRLQ F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVTALAEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP I E + +L+ + Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622 >gi|170691125|ref|ZP_02882291.1| DNA primase [Burkholderia graminis C4D1M] gi|170144374|gb|EDT12536.1| DNA primase [Burkholderia graminis C4D1M] Length = 636 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 166/658 (25%), Positives = 277/658 (42%), Gaps = 58/658 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 14 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 68 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 69 HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGAGGSGGGYSPAA 128 Query: 115 -----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL +RG+ F LGYAPD Sbjct: 129 SKAVTTALSDVMQTACDYYRKQLRG--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNL 186 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 187 EAAFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLD 246 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 247 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQGYVLVVEGYMDVVAL 295 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 296 AQLGFQNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNR 355 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G F + + ++PL + + + P+ RA Sbjct: 356 TIRFLFLPTEHDPDSYVREFGTEGFGEQVERAMPLSQFMLNEVLAGKELDQPEGRARALF 415 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRL F + R Sbjct: 416 DAKPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIA---------------A 460 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 K + + E L L+ +P + +E +L+ + + Sbjct: 461 AARLAPARKDRRSVTGIEEKTLRNLVMYPRTVAVLDEEAEQALLTVTRHGELFEEVTTHA 520 Query: 527 VEQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQ 579 ++ L G F E+ +++ + L +A +++ R+ + Sbjct: 521 RALGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQE 580 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + + + +L + + ++ Q++ + T + L E++ + ++ Q + Sbjct: 581 RIVGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELAELNRKRADMKRQLGL 636 >gi|149019674|ref|ZP_01834993.1| DNA primase [Streptococcus pneumoniae SP23-BS72] gi|168487461|ref|ZP_02711969.1| DNA primase [Streptococcus pneumoniae CDC1087-00] gi|147931049|gb|EDK82029.1| DNA primase [Streptococcus pneumoniae SP23-BS72] gi|183569692|gb|EDT90220.1| DNA primase [Streptococcus pneumoniae CDC1087-00] Length = 586 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|53722777|ref|YP_111762.1| DNA primase [Burkholderia pseudomallei K96243] gi|167820723|ref|ZP_02452403.1| DNA primase [Burkholderia pseudomallei 91] gi|52213191|emb|CAH39231.1| DNA primase [Burkholderia pseudomallei K96243] Length = 624 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 174/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPLPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRLQ F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP I E + +L+ + Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRERE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622 >gi|168491965|ref|ZP_02716108.1| DNA primase [Streptococcus pneumoniae CDC0288-04] gi|237650029|ref|ZP_04524281.1| DNA primase [Streptococcus pneumoniae CCRI 1974] gi|237821735|ref|ZP_04597580.1| DNA primase [Streptococcus pneumoniae CCRI 1974M2] gi|183573795|gb|EDT94323.1| DNA primase [Streptococcus pneumoniae CDC0288-04] gi|301794191|emb|CBW36609.1| DNA primase [Streptococcus pneumoniae INV104] gi|332202929|gb|EGJ16997.1| DNA primase [Streptococcus pneumoniae GA47901] Length = 586 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|313202041|ref|YP_004040699.1| DNA primase [Methylovorus sp. MP688] gi|312441357|gb|ADQ85463.1| DNA primase [Methylovorus sp. MP688] Length = 584 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 163/624 (26%), Positives = 279/624 (44%), Gaps = 48/624 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + I ++I + V + N Y ACCPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LIR 119 +CF C G + F+ G SF+E+V LA G+ +P + + + ++ Sbjct: 57 HCFGCGAHGSAIGFVMEYQGLSFVEAVNELAKQVGMIVPQETRERDTDAPQKKAVPGMVE 116 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A ++ LK + +R YL RG+ F++GYAP +L+E Sbjct: 117 AMQQAVLYYRGELKKS--QRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQDD 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLNS 236 K I + + YDRFR+R++FPI +GQVI FGGR L + KYLNS Sbjct: 175 VLKSIGL---VIENEQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG+ LY F A ++ + R +++VEGYMDV++L Q G++ V+ Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGR----------VLVVEGYMDVVALAQYGIEYAVA 281 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T + L + + IV CFDGD G +AA++A L L G R++F+ L Sbjct: 282 ALGTATTPVHITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAE 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R YGK AFE + +LPL L + +E+ + +++ + + I+ Sbjct: 342 HDPDSYVREYGKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQEDKVRFLNEAEPILAQIQ 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +L + + + ++ + + ++ R + Sbjct: 402 APRLALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLS------------ 449 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + +L ++ PA++ +LA + +++ E L V P Sbjct: 450 ------LQRRFVLMVLMQPALVSP--DDLAWVLHESEE-DALVKHALEAAVAYPSAKPAG 500 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +L R L+++L+R++ R+ + A + LL+R +E Sbjct: 501 LLLQLQNRVDARLMRELEREI-HLLDEQVDYSLEFEGARKQLRDMYAERQGKTLLARMQE 559 Query: 597 EIEKQIAQVTAKGEAEKTAILISI 620 + + + + Sbjct: 560 KKISDMTEQEKALLKAMVGATKNR 583 >gi|313149171|ref|ZP_07811364.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313137938|gb|EFR55298.1| DNA primase [Bacteroides fragilis 3_1_12] Length = 675 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 159/680 (23%), Positives = 288/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 10 IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 65 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEAMRKGF 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR LS KY+NS Sbjct: 185 KKEFLVKTGLCYET-DDHKLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPAVTNHAPVPEAGEIPPPFP 470 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ +I + +++ Sbjct: 471 PEEAEIDTYQSFIPQEGKEGQEFYKYERLIIQMIIRYGERVMCNMTDEEGNEVPVTVVEY 530 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S EQ++ + + +L Sbjct: 531 VINDLKEDELAFHNPLHRRILSEAAEHIREQEFASERFFVAH-PDPAISTIATELASDRY 589 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPAIANDNAQCDA 649 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 650 VMQRYKEMK----EIQNLMA 665 >gi|260101317|ref|ZP_05751554.1| DNA primase [Lactobacillus helveticus DSM 20075] gi|260084902|gb|EEW69022.1| DNA primase [Lactobacillus helveticus DSM 20075] Length = 611 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 160/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESVQR+A A + +P + ++R+ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +DS+ +E FK+GYAP L +LR KG+ + Sbjct: 117 KDAEDFYHRVLLTTKAGERGMQYAKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + +DRFR+RLIFP+ G I F GR +S ++ KY+NSPET Sbjct: 177 DDLAQSGLFVQSQDG-RLFDRFRDRLIFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + S ++L EGYMDV++ +AG+++ V+S+G Sbjct: 236 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 286 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R YG ++ + +L D KR + + + E+ I+H+K+ Sbjct: 344 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470 + Y + + + R + H + QS+ Sbjct: 404 EQDMYLEKLSRSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 463 Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L + + ++ LL I+ Q + + + + + L Sbjct: 464 SVETLPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 521 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + E+ L + DA L + I ++ + Sbjct: 522 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 568 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + R + Q E++ Q+ + + +KT + + E+ + Sbjct: 569 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 610 >gi|291515121|emb|CBK64331.1| DNA primase, catalytic core [Alistipes shahii WAL 8301] Length = 657 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 157/675 (23%), Positives = 287/675 (42%), Gaps = 67/675 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ + + I ++IG+YV R+ N Y ACCPFH+EKTPSF + SKG Y Sbjct: 2 IDRETVDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ ++FL ++ E+++ +A G+ + + ++ + + L Sbjct: 57 KCFGCGKGGNAVTFLMEHENITYPEALKMVAKRYGIEVKEKEMTEEEVRRNDDRESMFAL 116 Query: 121 IEVATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 A ++F + L + + Y+ +RG+ I F LG+ P + + G Sbjct: 117 NGWAAEYFANYLHRETEGQSVGLAYFRQKRGMTDATIRKFGLGFCPAKGDRMSKDALAAG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236 + +E ++ GL + ++ + YDRFR+R+IFP+ + G+++AFGGRTL + V KY NS Sbjct: 177 YKQEFLVSTGLSLQRESDGSLYDRFRDRVIFPVHNISGRIVAFGGRTLRTDKQVAKYQNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++ K + LY + A + F I+VEGY DV+S+ QAGV+NVVS Sbjct: 237 PESEIYSKKRELYGLYFAKKAI----------QQQDFAIMVEGYTDVISMHQAGVENVVS 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RLL + + I + +DGD G+ A+ + ID+ L G V VLL Sbjct: 287 SSGTSLTTEQIRLLNRFTKNITVIYDGDSAGIHASLRGIDM---ILKEGMNVRVVLLPEP 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF R + + ++ I + + + P +A L + ++ I Sbjct: 344 EDPDSFARSHTASELQEYIRANEQDFLEFKAKLLLQDAEGDPIRKAALIADMVQSVSVIP 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--------NARHRDQKGPSQRLMQ 468 D R Y + + Q I+E + + ++ +Q+ Sbjct: 404 DPIQRSVYIKECARIMDIDEQILISEVARKRMTTSGDRETDEFLRRQTTLRQREAQQPGV 463 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPA---------------ILQEQYQELAD--IRYD 511 + + + E ++ L+ + + + + EL+D I + Sbjct: 464 EFVKQVEAGSSFETLEREIVKYLLKYGHCSFDFKEGRTMVACNVAEVIFSELSDDNIAFR 523 Query: 512 NNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSAT 566 N K+ + + + L D + LW Sbjct: 524 NPVYNKIMAAYREQWAQLGTGVEVPAHVFLNHIDPEVCNMSVDILTSDDNYVASELWRRK 583 Query: 567 T---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + + + G +A+ LY + +++ +E++ ++ E+ ++ L Sbjct: 584 EIHIDTDAEMLAVGVPKAVTLY-KSKVIEALIKELQGRLGDENIS--DEEMRDVVQRLTA 640 Query: 624 -------VHIQIHQI 631 + +I ++ Sbjct: 641 YNQVKVTIANKIQRL 655 >gi|315658162|ref|ZP_07911034.1| DNA primase [Staphylococcus lugdunensis M23590] gi|315496491|gb|EFU84814.1| DNA primase [Staphylococcus lugdunensis M23590] Length = 604 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 263/634 (41%), Gaps = 37/634 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-KIEKKEKIQTDLIR 119 +CF C G+ F + SF+E+V+ L A + + + P + + +I Sbjct: 56 ICHCFGCKKGGNVFQFTQDIKDISFVEAVKELGARVNINVDIGTPSETPQIASDDLKMIE 115 Query: 120 LIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+ ++ ++ LK + YL +RG I+ +GYAPD+ + + L + + Sbjct: 116 MHELMQTYYQYALLKTVEGEEALNYLKQRGFTDELIQQRGIGYAPDNAHFCLDFLTKNDY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E EAGLL + + + YDRFR+R++FP+ +++G+++ + GRT + + KYLNSPE Sbjct: 176 DIELAYEAGLLSRNEENFSYYDRFRDRIMFPLNNAQGRIVGYSGRT-YRNQEPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + LYN A ++K + +IL+EG+MDV+ AG+++VV+S+ Sbjct: 235 TPIFQKRRLLYNLDYARKRIRK----------NDEVILLEGFMDVIKSDAAGLKHVVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTAL++ + L KL+ + L FDGD G AA K + L G V + L D Sbjct: 285 GTALSQEHITFLKKLTSNVTLMFDGDFAGREAALKTGQV---LLQQGLNVYIIQLPNDMD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I YGK F + + + ++ + + ++ Sbjct: 342 PDEYIVKYGKEEFLNFVATEKKSFIVFKYKTKQDEIQHNDLAYERYLKEAIQDVAFVQSN 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+ Q + + E + Y N +Q + + + Sbjct: 402 ILKNKIVQDVAGVFNIEANRLNNEIAQQSHSITEYDYDNYYSGAYFHDNQPMHAAQIDNF 461 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E LL +N + + N ++++ L + E + Sbjct: 462 NHLNKREKAERGLLKHFMNDKDTFLNYAANINSQLFSNPSFKQIFEILKDFYAENDNYHI 521 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + Q E++ LD + N+ + +A Sbjct: 522 SDFIQYTDSSDLREMMISLDNY-----------DLNLEPFDHEIEDYIATLMENND-EDS 569 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + ++ + G+ + + ++ + + Q Sbjct: 570 IEILNHKLNEAQRTGDIDMVKYYLQMIVQKNQQR 603 >gi|265767061|ref|ZP_06094890.1| DNA primase [Bacteroides sp. 2_1_16] gi|263253438|gb|EEZ24914.1| DNA primase [Bacteroides sp. 2_1_16] Length = 675 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 10 IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 65 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R++FP+ + G+V+AFGGR LS KY+NS Sbjct: 185 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 470 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ ++ + +++ Sbjct: 471 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 530 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S +Q++ + + +L Sbjct: 531 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 589 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + + Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 649 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 650 VMQRYKEMK----EIQNLMA 665 >gi|323344825|ref|ZP_08085049.1| DNA primase [Prevotella oralis ATCC 33269] gi|323094095|gb|EFZ36672.1| DNA primase [Prevotella oralis ATCC 33269] Length = 646 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 149/660 (22%), Positives = 279/660 (42%), Gaps = 56/660 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I +++ ++V +R N Y CPFH+EKTPSF + S+G Sbjct: 2 IDKPTIEKIKDAANIVDVVSEFVSLRKRGAN-----YMGLCPFHNEKTPSFVVSPSRGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +SF+ ++ E+++ LA + + ++++ + + + Sbjct: 57 HCFGCGKGGNAVSFIMEHEQMTYPEALKWLANKYHIEIKERELTDDEKREQSEREAMFIV 116 Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E +F + L N D Y RG IE F+LGY R++L +KG+ Sbjct: 117 NEWTAKYFQNILHNTPDGLAIGMQYFRSRGFRDDIIEKFQLGYDLQDRHALAATAIKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 E +++ G+ + + DRF R++FP G+V+ FGGR L KG ++KY+N Sbjct: 177 KPEFLLKTGICYEN-DRHELIDRFSGRVVFPWIGVSGKVVGFGGRVLDSRTKGVNIKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPESDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + I L +DGD+ G+ AA + D+ L G + +LL Sbjct: 286 ANSGTALSFHQIHTLHRFTSNITLLYDGDEAGIHAALRGTDM---LLAEGMNLKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPDSF R + F + I + + +K + ++ P +R+E + I+ I Sbjct: 343 GNDPDSFSRQHSAAVFRQYINDHQTDF-IQFKTDLLLKNETDPIKRSEAINSIVKSISVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR----YWKKNARHRDQKGPSQRLMQSSL 471 ++Q LR Y R+ I + + R K + Q+ +Q + + Sbjct: 402 QNQILRDTYLHDCAQRMGINEGTLINTMNRFIRDSRDAQAKETDRKQQEQETQVAPRQPI 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE------------------LADIRYD 511 ++ E L+ ++ + I+++ E ++++ Sbjct: 462 QPATPMQQAKKVEQMLIQLVMKYGERIIVKDATDEEGNVYTLSVAQFIDYNLNTDNLQFG 521 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 N K+ + + + + + S E + Sbjct: 522 NELYNKILAEAVECCRTEGFRAETYFIHHEDIEVSRLAID--MTADKFKLSESLKKEVDD 579 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + L L R + ++ +E+++ I A E EK L+ ++ + + Sbjct: 580 ERLLNRTIHLL-LDFRMDYVEKRLKELQQGI--SLAVNEPEKMLKLMEEYKDMQNIRNTL 636 >gi|268319376|ref|YP_003293032.1| DNA primase [Lactobacillus johnsonii FI9785] gi|262397751|emb|CAX66765.1| DNA primase [Lactobacillus johnsonii FI9785] Length = 603 Score = 345 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 277/634 (43%), Gaps = 44/634 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEKFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVNEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVRKVAELAHLHMPDGYGETVKPISPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 AT+F+ H L + +R Y +R + S +E FK+GYAPD+ L +LRQ+G+++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYAQKRELTSDLLEHFKVGYAPDNDTILLTYLRQEGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 +++ E+GL ++ + +DRFR+RL+FP+ G + F GR +S +++ KY+NSPET Sbjct: 176 DELRESGLFVESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + S +IL EGYMDV++ ++G+Q+ V+S+G Sbjct: 235 KIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKSGIQSGVASMG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L DP Sbjct: 285 TSLTTEQVYMLRRITPNILINYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG ++ + +L +D L +R + + E+ I + D Sbjct: 343 DEYVKKYGVEKYQAEVAGALSSIDFLLERLANQYNLHNDREKLGYITASVQMIAGLNDPV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + + R ++ H+ + L + K + Sbjct: 403 AADLYLDKLARQTGVTRESLKVTFVRERRKLQRAKNHQQAYQAPKSLPIDQPSEPKEEQA 462 Query: 480 PSLRE------AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL I+ + + + KL F + Sbjct: 463 GIDLETRNPALDRLLYLFIHSDEARDYLLSQ--QFLFPDERYAKLAEFWLKYHQTHEGAE 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E +L + + + S + + ++ + + + Sbjct: 521 VTGFIDFIPE--------ELQGIIINMEMISMPPDYSKRELDDQLRA-----LEKNKIDQ 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ K + + + + + Sbjct: 568 QLNDLLNQLKDAQRKQDNSLELEIAQKVIALRRK 601 >gi|295135651|ref|YP_003586327.1| DNA primase [Zunongwangia profunda SM-A87] gi|294983666|gb|ADF54131.1| DNA primase [Zunongwangia profunda SM-A87] Length = 674 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 146/672 (21%), Positives = 265/672 (39%), Gaps = 64/672 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +I +V + TN + PF DE+TPSF + K + Sbjct: 16 ISKSTIDSVFETARVEEVIQDFVQLKKSGTN-----FKGLSPFTDERTPSFMVSPVKQIW 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA G+ + E+KE+ + + + Sbjct: 71 KDFSSGKGGNVVAFLMEHEHYTYPEAIKYLAKKYGIEIEETQQTDEQKEQANERESMYLV 130 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L + Y ERG + I+ F+LGY D + + +G+ Sbjct: 131 SEFANKYFQKILHKTDAGQAIGLSYFKERGFTNETIKKFELGYCLDDWDAFTKEALAEGY 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 191 KLDYLEKTGLSIVKGERQ--FDRFKGRVMFPIHSMSGRVLGFGGRILTSDKKAAKYLNSP 248 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY A + K LVEGY DV+ Q+GV+NVVSS Sbjct: 249 ESEIYHKSKVLYGISYAKQAIAK----------EDNCYLVEGYTDVIQFHQSGVENVVSS 298 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V GE Sbjct: 299 SGTALTTEQIRLISRLTKNITVLFDGDAAGIRASLRGIDL---ILEQGMNVKVCTFPEGE 355 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + ++ + E+ + N P ++A L + + I I D Sbjct: 356 DPDSFARQKSEDQLKEFLAENATDFISFKASLLMKDAKNDPVKKAALIRDMVSSIAKIPD 415 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQSSL 471 + Y Q + + + + +++ + +K Sbjct: 416 TIQQEVYLQECSRIMDISEDVLFSTLAQLTKKGEQDQKRAAKKDQKSFKVVRDNQPNQEQ 475 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-------------------------- 505 + + + E ++ L+ + +E + Sbjct: 476 QTIRRVDELHVLERGIVSALLLYGNEKREFEEMFLEADESGEPVLKSAHVERKVSRKIYL 535 Query: 506 ----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL---DRQVR 558 ++ N + + ++ L + ++ + E+ + + L ++ Sbjct: 536 DLQEDEVALANPDFRAIYEHLIEYYNREEKLIIEKFVSEIPPEKSAIVTDILMAEEQYQL 595 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + + L R LL + +E++ I ++ A+ + + I Sbjct: 596 SDWMRQDIPVKSKNEQIDRLVSETILNFRRHLLMSKIKELQSSITELNAEVDNSEKLEEI 655 Query: 619 SILHEVHIQIHQ 630 ++ I + Sbjct: 656 MDYIQLRKTIEE 667 >gi|161507647|ref|YP_001577601.1| DNA primase [Lactobacillus helveticus DPC 4571] gi|160348636|gb|ABX27310.1| DNA primase [Lactobacillus helveticus DPC 4571] Length = 611 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 159/642 (24%), Positives = 283/642 (44%), Gaps = 50/642 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P DFI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEDFIAEVRSNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESVQR+A A + +P + ++R+ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDNLTFPESVQRVAEFAHIAMPA--GYNTSGGTKLSPIMRIN 116 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A DF+H L +R Y +R +DS+ +E FK+GYAP L +LR KG+ + Sbjct: 117 KDAEDFYHRVLLTTKAGERGMQYTKKRQLDSNTLEHFKIGYAPKEDNVLITYLRSKGYKD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + +DRFR+RLIFP+ G I F GR +S ++ KY+NSPET Sbjct: 177 DDLAQSGLFVQSQDG-RLFDRFRDRLIFPLEDENGHSIGFSGRRISNDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K L++F A + S ++L EGYMDV++ +AG+++ V+S+G Sbjct: 236 AVFTKSKVLFHFAEAKKAAR----------SEGHLVLYEGYMDVIAAYKAGIKSGVASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L +++P I++ +DGDDPG+ A +A + + V+L DP Sbjct: 286 TSLTDDQVYMLRRVTPNIIVNYDGDDPGVHAEERAARMFSK--DGDFNLGIVVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R YG ++ + +L D KR + + + E+ I+H+K+ Sbjct: 344 DEYVRKYGAEKYQGEVKGALTPTDFFLKRLAQKYNLDNDREKITYLDEAVKEISHVKNPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS--------- 470 + Y + + + R + H + QS+ Sbjct: 404 EQDMYLEKLSRSAGVSLNSLKANLARERRKNNRARSHTRTRNRDYYTDQSNSLNLGEPTS 463 Query: 471 ----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + + ++ LL I+ Q + + + + + L Sbjct: 464 SVETMPVQQTEVQKHPSQSRLLYLFIHSANAQQYLQE--GKFHFPDQDYETLSQLWLKFA 521 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + E+ L + DA L + I ++ + Sbjct: 522 ATHDNPQIDSFLDFIPEQ--------LQGIIVDAELAHMPKDFTIQEINEHVFA-----L 568 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + R + Q E++ Q+ + + +KT + + E+ + Sbjct: 569 QKRSIYSQLNELQNQLQDAKRREDVKKTIEVTQKIIELKRIL 610 >gi|330839345|ref|YP_004413925.1| DNA primase [Selenomonas sputigena ATCC 35185] gi|329747109|gb|AEC00466.1| DNA primase [Selenomonas sputigena ATCC 35185] Length = 589 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 165/630 (26%), Positives = 275/630 (43%), Gaps = 45/630 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F++ + I ++ YV ++ YW CCPFH E TPSF +GF+YC Sbjct: 2 DAFVERVRADSDIVAVVSSYVALKKKGN-----RYWGCCPFHHENTPSFSVVPEQGFFYC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122 F CHV G+ FLS + + E+++ A +PLP + + ++K +L R+ E Sbjct: 57 FGCHVGGNVFKFLSLIENIPYFEAIKLQAEKLNIPLPERERSAAEIARDKKAEELRRVHE 116 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A FFH+ L K + YL RGI IE F +GYAP + L ++G Sbjct: 117 MAQTFFHNCLTKTHYGEAAKAYLAGRGIGESVIEAFGIGYAPPAWDKLAVAFEKRGVPAA 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + E+GL A YDRFRNR+I PIR +RG+V+AFGGR L KYLNSPET++ Sbjct: 177 LLEESGLAAKRQKGAGHYDRFRNRVIIPIRDARGRVVAFGGRIL-GDGEPKYLNSPETLI 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + L+ A + + + F ++VEGYMD +S+ AG++NVV+SLGTA Sbjct: 236 FNKRRLLFGLDRAHRAIAR----------AGFAVVVEGYMDAISVAAAGIENVVASLGTA 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 Q +LL + +P + C+D D G A +A+ + G V + + G+DPD Sbjct: 286 FAAEQAKLLLRYAPEVRFCYDSDAAGQEATLRALSVAR---AAGATVKVLRVPDGKDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +IR +G+ AF KL+ +LP ++ R E + R + L + +K Sbjct: 343 YIRKHGEAAFRKLVEAALPFIEYRMVRVLETADKESLQGRLDTLAALLPVLAEVKSPAEL 402 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y L E A R+ + + L + Sbjct: 403 DGYIVRTARELTLDEGLIRAELGRAAGSSAPPAAVRETTRRAFKKADDILQRAG------ 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 +L T + PA+ + + + E K ++L+ + + L Sbjct: 457 ---RIVLRTAWHDPAVTEHIASLVPFEAFSTEEQAKALAWLYGLHLAGERPTDARAQAEL 513 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E E+ + L + +D + Y ++ +R L++ EE ++ Sbjct: 514 SEAVATEISRSLA------------EDTGTMDALEAYDDSMRRLRRAY-LAQLFEEHTRR 560 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + +A + ++ + + ++ + Sbjct: 561 ADRWEKENDA-RFLQELAQIQRIKNEMEGL 589 >gi|83746508|ref|ZP_00943559.1| DNA primase [Ralstonia solanacearum UW551] gi|83726839|gb|EAP73966.1| DNA primase [Ralstonia solanacearum UW551] Length = 603 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 178/643 (27%), Positives = 284/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117 +CF C G + FL G S++E+++ LA AG+ +P +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A D + L++ YL RG+ F LGYAPD SL Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + +E+ P+ RA + K Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V D + E + Q+ LA Sbjct: 510 VGPEMHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDAAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + +++++ + +A+K + L E+ + Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 601 >gi|315656299|ref|ZP_07909190.1| DNA primase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493301|gb|EFU82901.1| DNA primase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 692 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 142/708 (20%), Positives = 257/708 (36%), Gaps = 101/708 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + ++ + IPI +++ YV R+ + CPFHDEKT SF + Sbjct: 4 KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F E+V+ LAA AG+ + V+ KE+ + L Sbjct: 58 WHCFGCSQGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + +R +++ R S F +GYAP +L ++LR KG Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 F++++I+ GL YD FR+R+++PI+ G V+ FGGR L + KY+N Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDPQVPKYIN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + K R ++VEGY DV++ +G+ V Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285 Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335 ++ GTA T+ + + + ++ FDGD G AA KA Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + G DP G A LI PL D + K Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 ++P R E + I+D+ LR Y + + L + + R + R Sbjct: 403 DSPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVNVRDTWYTVNEVWRRIRSQQR 462 Query: 456 HRDQKGPSQR--------------------------------LMQSSLVKGKLSKKPSLR 483 + Q+ L + Sbjct: 463 ASSANSSQPGGLGGPGNAAGGSEKSANLGNLTGSDASSSPQVIPQTRLDPAVNTDPVWRV 522 Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529 E +L+ + P + + L + L+ ++ + + Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAVGGAGEYRRLAEVAQAAG 582 Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALA 583 + + L+ L ++ + + Q Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLATRPAPLYEANQSAEETRIAAESWVQNAV 642 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + L+ Q ++ Q+ ++ + + + A + L + ++ ++ Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688 >gi|255011356|ref|ZP_05283482.1| putative DNA primase [Bacteroides fragilis 3_1_12] Length = 667 Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats. Identities = 159/680 (23%), Positives = 288/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 57 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEAMRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR LS KY+NS Sbjct: 177 KKEFLVKTGLCYET-DDHKLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPAVTNHAPVPEAGEIPPPFP 462 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ +I + +++ Sbjct: 463 PEEAEIDTYQSFIPQEGKEGQEFYKYERLIIQMIIRYGERVMCNMTDEEGNEVPVTVVEY 522 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S EQ++ + + +L Sbjct: 523 VINDLKEDELAFHNPLHRRILSEAAEHIREQEFASERFFVAH-PDPAISTIATELASDRY 581 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPAIANDNAQCDA 641 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 642 VMQRYKEMK----EIQNLMA 657 >gi|219683599|ref|YP_002469982.1| DNA primase [Bifidobacterium animalis subsp. lactis AD011] gi|219621249|gb|ACL29406.1| DNA primase [Bifidobacterium animalis subsp. lactis AD011] Length = 693 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 154/718 (21%), Positives = 257/718 (35%), Gaps = 103/718 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDE+TPSF+ S G + Sbjct: 5 IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119 +CF C GD F+ F E+V+ LA + L + + + L+ Sbjct: 61 HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF + L R F GYAP +L HL KGF+ Sbjct: 121 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++++AGL + YD FR R +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 181 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+HK + LY A + K +++VEGY DV+++ AGV V++ Sbjct: 239 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 288 Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335 GTA E +++ +L RIV FDGD G +AA A Sbjct: 289 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 348 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L + + DP G A L+V + PL D + Sbjct: 349 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 405 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451 + + I IKD+ L Y++ R+ E R Sbjct: 406 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 465 Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492 +N ++ P + +G + R E + TL+ Sbjct: 466 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 525 Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547 P ++ E ++ L + Q ++ + + + P + L + G Sbjct: 526 QIPRVVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 585 Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 ++ +L +Q + EA+ RQ Q A Sbjct: 586 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 644 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 + R+ + +Q ++ T + L + EV + ++SQ FG +G Sbjct: 645 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 693 >gi|301164685|emb|CBW24244.1| putative DNA primase [Bacteroides fragilis 638R] Length = 667 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 57 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R++FP+ + G+V+AFGGR LS KY+NS Sbjct: 177 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 462 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ ++ + +++ Sbjct: 463 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 522 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S +Q++ + + +L Sbjct: 523 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 581 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + + Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 641 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 642 VMQRYKEMK----EIQNLMA 657 >gi|296159637|ref|ZP_06842460.1| DNA primase [Burkholderia sp. Ch1-1] gi|295890081|gb|EFG69876.1| DNA primase [Burkholderia sp. Ch1-1] Length = 622 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 168/652 (25%), Positives = 276/652 (42%), Gaps = 56/652 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEPSPGYGGGGSGGYAPAASK 116 Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 T L +++ A DF+ L++ YL +RG+ F LGYAPD + Sbjct: 117 AVTTALSDVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERVMFPIRNVKGQVIGFGGRVLDGG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H + Sbjct: 284 LGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R YG AF + + ++PL + + + P+ +A Sbjct: 344 RFLFLPAEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F + R +K Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG- 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 E L L+ HP + +E +L+ + + Sbjct: 463 --------------IEEKTLRNLVMHPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508 Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + +L + + ++ Q++ + T + L E++ + ++ Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKR 618 >gi|124382161|ref|YP_001025511.1| DNA primase [Burkholderia mallei NCTC 10229] gi|126446300|ref|YP_001077576.1| DNA primase [Burkholderia mallei NCTC 10247] gi|254359398|ref|ZP_04975670.1| DNA primase [Burkholderia mallei 2002721280] gi|126239154|gb|ABO02266.1| DNA primase [Burkholderia mallei NCTC 10247] gi|148028585|gb|EDK86545.1| DNA primase [Burkholderia mallei 2002721280] gi|261826679|gb|ABM99705.2| DNA primase [Burkholderia mallei NCTC 10229] Length = 624 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 173/656 (26%), Positives = 275/656 (41%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 TIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRLQ F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP I E + +L+ + Sbjct: 449 PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLRALPRIGELFDEVIGHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ + VRD + ++A +R+ Sbjct: 509 RALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYNENVRDLMQQNPESDAAQEGLRERE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 622 >gi|89900987|ref|YP_523458.1| DNA primase [Rhodoferax ferrireducens T118] gi|89345724|gb|ABD69927.1| DNA primase [Rhodoferax ferrireducens T118] Length = 625 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 188/655 (28%), Positives = 286/655 (43%), Gaps = 58/655 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P+ FI++LL + ++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MSIPQTFIQELLARADVVEIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQ 114 FY+CF C GD +SFL G +F+E+VQ LA G+ +P D + ++ + Q Sbjct: 56 FYHCFGCGKNGDAISFLMEHAGMTFVEAVQDLAQQYGLQVPEDDASPQDRARALEQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 T L ++E A D + LK + R YL RG+ + F LGYAP+ SL Sbjct: 116 TTLTDVLERANDAYRKQLKES--PRAVDYLKGRGVSGEIAKQFGLGYAPEGWRSLASVF- 172 Query: 175 QKGFSEEKIIEAGLLI----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + + ++E+GL+I + YDRFR+R++FPIR+ +G+ I FGGR L + Sbjct: 173 -PSYDDPLLVESGLVILNVDENSGEEKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDK 230 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET +F KG+ LY F A N L + ++ EGYMDV++L Q G Sbjct: 231 PKYLNSPETPVFSKGRELYGLFEARNALH----------EQGYALVTEGYMDVVALAQLG 280 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T L L++ + +V FDGD G RAA KA+D L V F Sbjct: 281 FSNAVATLGTACTAEHLHKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFATDVRSVKF 340 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDSFIR +GK AF + + E++PL L E NT + RA + K Sbjct: 341 LFLPPEHDPDSFIREFGKEAFARYVSEAVPLSRFLIDAAREGCDLNTAEGRAHFASNAKP 400 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYIT-----------EHSGYGRYWKKNARHRDQ 459 + D L+ I D +Q ++ S + Sbjct: 401 LWLLLPDGALKLQLLSEIADLVQLSSRELTEVWNPSAAGKGNAKSKTYEKHSASPNEYGG 460 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKL 518 + + +P+ R L+ A L+ E + D E L Sbjct: 461 YSQKSSIKPPPRPRPGGRVRPTSRADYAARLLLGDMAALEVLSAEDHTLLCDLPEPHGPL 520 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + +L + E + + L R EL +L AG T+ + ++R Sbjct: 521 FVWLENQLHEHGPQAWVALREGLRGRQEEELAVRLMTGYELAG--PLETDESSKELRDLL 578 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + L + + + I A A + E+ + ++ES Sbjct: 579 NRMLVEKLKVQE--------TEAIQAAKADPGA------LQRYRELQARRFKLES 619 >gi|299066182|emb|CBJ37366.1| DNA primase [Ralstonia solanacearum CMR15] Length = 603 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 181/643 (28%), Positives = 286/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTD--L 117 +CF C G + FL G S++E+++ LA AG+ +P P + E+ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPAARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A+D + L+ A YL RG+ F LGYAPD SL Sbjct: 117 GDVMARASDHYRKQLRGAPGA--VQYLKGRGLTGEIAGHFGLGYAPDDWQSLESVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIATPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + TE+ P+ RA + K Sbjct: 344 LFLPHEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVTEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + + I G + R ++ R ++ Sbjct: 404 LLSAMPPGGLRLQIVRGLAE-VTGTTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRTQLTAPELPQGEMLSGLLAECDT 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V + + E + Q+ LA Sbjct: 510 AGPEMHFGAFVERLGQTPYAEAFAGLRVAVLNDDIEL---EPATQEFDVAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + +++++ + +A+K + L E+ + Sbjct: 563 -EPLRRELDMLQRKM-EGGHATDADK--ERLRWLVSEISRRRR 601 >gi|167583911|ref|ZP_02376299.1| DNA primase [Burkholderia ubonensis Bu] Length = 624 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 172/656 (26%), Positives = 276/656 (42%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-------------DPKIEK 109 +CF C G + FL G SF E+VQ LA G+ +P + Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLSFPEAVQELAQSVGLTVPHEPSPMRGGGGGGDYPSQPAV 116 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 + + T L ++ A D++ L+ YL +RG+ F LGYAPD Sbjct: 117 SKSVATALSDVMAAACDYYRKQLRG--APAAIQYLKKRGLTGEVAARFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + R E ++ D A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFPDYRDDALVESGLVIVSEKTDAQGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLG 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 SGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------ERKYVLVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A++ L H Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALEACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA+ Sbjct: 344 TIRFLFLPTEHDPDSYVREFGADAFSEQVERAMPLSQFLLNEAIAGKALDQPEGRAKALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRL F++ R + Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDIPFEEVAGLSDVDTRLAAPPRQ----------- 452 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + E L L+ HP + + E + +L+ + Sbjct: 453 ----APARSDRRRVTDNEKRALRNLVMHPRVAVQLDDEQVATLRALPRIGELFGEVVDHA 508 Query: 527 VEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 L + + + E+ +++ D VRD L + EA R+ Sbjct: 509 RALGDGAEFRLLSDVLRTSSNAATYEEIFREILDYDENVRDLLLQNPDDEAVPERQREQE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + +Q E + L ++ ++ Sbjct: 569 RIAGEELQAAVLKMRYDACCDRLDRLSRQ--STFTPEERAELTELNQQRADMKRRL 622 >gi|83717428|ref|YP_438820.1| DNA primase [Burkholderia thailandensis E264] gi|167615341|ref|ZP_02383976.1| DNA primase [Burkholderia thailandensis Bt4] gi|257141904|ref|ZP_05590166.1| DNA primase [Burkholderia thailandensis E264] gi|83651253|gb|ABC35317.1| DNA primase [Burkholderia thailandensis E264] Length = 625 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 279/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108 +CF C G + FL G +F E+VQ LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGYAPPA 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + R + ++ D + +A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSDKTDANGAARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRL+ F + R Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLRIPFDEVAALAEVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L L+ HP I E A + +L+ + Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAAVLDDESAATLRALPRIGELFDEVIGH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 + L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 ALALGEGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRER 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623 >gi|91777316|ref|YP_552524.1| DNA primase [Burkholderia xenovorans LB400] gi|91689976|gb|ABE33174.1| DNA primase [Burkholderia xenovorans LB400] Length = 622 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 168/652 (25%), Positives = 276/652 (42%), Gaps = 56/652 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGSSFPEAVNELAQSVGLTVPNEPSPGYGGGGSGGYAPAASK 116 Query: 115 ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY---S 168 T L +++ A DF+ L++ YL +RG+ F LGYAPD + Sbjct: 117 AVTTALSEVMQTACDFYRKQLRS--APVAIQYLKKRGLTGEIAARFGLGYAPDGWQNLEA 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L G Sbjct: 175 AFPNYRDDSLVESGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDGG 234 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 E KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Q Sbjct: 235 EP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALAQ 283 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H + Sbjct: 284 LGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDSAGRRAARRALDACLPHAADNRTI 343 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L DPDS++R YG AF + + ++PL + + + P+ +A Sbjct: 344 RFLFLPAEHDPDSYVREYGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFDA 403 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 K + + LR DRL F + R +K Sbjct: 404 KPLLQALPANALRAQIMHMFADRLDVPFDEVAALCEVDSRIAAAARAAPARKDRRSVTG- 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 E L L+ HP + +E +L+ + + Sbjct: 463 --------------IEEKTLRNLVMHPRTVAVLDEEAEQALLTVTRHGELFEEVTTHARA 508 Query: 529 QKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQA 581 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 LGDSAEFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPEDATVIEERREQERI 568 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + +L + + ++ Q++ + T + L E++ + ++ Sbjct: 569 VGEELKAAILKMRYDAYCDRLEQLSRQSRH--TPEEFAELSELNRKRADMKR 618 >gi|225858885|ref|YP_002740395.1| DNA primase [Streptococcus pneumoniae 70585] gi|225721810|gb|ACO17664.1| DNA primase [Streptococcus pneumoniae 70585] Length = 586 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPYQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T+ Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTV 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENGENLQAQIEFLEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEVHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|327314006|ref|YP_004329443.1| DNA primase [Prevotella denticola F0289] gi|326945517|gb|AEA21402.1| DNA primase [Prevotella denticola F0289] Length = 723 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 151/666 (22%), Positives = 275/666 (41%), Gaps = 54/666 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +I +V + T Y CPFHD++TPSF + KG Y Sbjct: 82 IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVKGVY 136 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + +++E + + + Sbjct: 137 KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 196 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F + L N D Y RG I F+LG+ R++ + + GF Sbjct: 197 NEWAARYFENILHNDVDGMAVGMQYFRSRGFRDDIIRKFQLGFCLSGRHAFADAALKAGF 256 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +I+ GL + DRF R++FP G+V AFGGR L KG + KY+N Sbjct: 257 QRTFLIKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVTQKYVN 315 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+++++HK + LY F A + K + +VEGY DV+S+ Q G++NVV Sbjct: 316 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 365 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+RLL + + IVL +DGD G AA + D++L G V +LL Sbjct: 366 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 422 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R + F + I ++ + N + + +++ Sbjct: 423 GKDPDEFARSHSAEDFRRYIEDNQTDFIVFKINILLNGVTDPVKRSEAVSSIVRSVSVI- 481 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 KD LR Y + +R + + + ++ R + Q+ + Q+ Sbjct: 482 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSDREQQTREQQQQRAAIIQQQTDGQAA 541 Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNN 513 + + E L+ ++ I ++ E ++ + + Sbjct: 542 VPAPQVPEVEQMLMQVIVRDGEKVIFRDVKDEESGQLYSLTVAQYIAFDLGSDNLGFSDP 601 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANIV 572 ++ E+ + E Q +K +DR L TE + Sbjct: 602 LYARMLQEAVEHSGEENFKAEEYFMQHPDIHVASAAVKLGVDRFQLSESLQVKETEKTLC 661 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 D +A + R +S +E+ ++ QV GE ++ I + + ++ + Sbjct: 662 D---RVVHLIADF-RLDYVSSHLKELNARLTQVKDAGEMKEIMEEIMKIQTLRNKLAKKL 717 Query: 633 SQEAMI 638 + ++ Sbjct: 718 GSDILV 723 >gi|109897364|ref|YP_660619.1| DNA primase [Pseudoalteromonas atlantica T6c] gi|109699645|gb|ABG39565.1| DNA primase [Pseudoalteromonas atlantica T6c] Length = 588 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 161/625 (25%), Positives = 284/625 (45%), Gaps = 53/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DL+ I ++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPREFIDDLIARTDIVEVVDNRVKLKKAGRN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C G+ +SFL F E+++ LA V +P ++++ + D Sbjct: 59 YHCFGCGAHGNVISFLMEYDRLEFPEAIEELAQYHSVDVPREKSSTPAPTAEQKQQKADD 118 Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E + +F LK DK + YL +RG+ ++ F +GYAP ++ + Sbjct: 119 YELMETISRYFSQQLKVHSDKDKAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTFGRT 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++++++ L I +++ +D FR R++FPIR RG+++ FGGR L + KYLNS Sbjct: 179 PEAQQQLLDLKL-ITENDNRRRFDFFRERIMFPIRDKRGRIVGFGGRVL-GDGTPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG LY F+ A + R +++VEGYMDV++L Q ++ V+ Sbjct: 237 PETRIFHKGNELYGFYQAKQAHRNLPR----------VMIVEGYMDVVALAQFDIKYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T +++L++ + +V C+DGD G AA++A++ L +L G + F+ L G Sbjct: 287 SLGTATTPEHIQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDG 346 Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 EDPD+ +R GK AF +KL+ +S+PL + + + + +A L+ I I Sbjct: 347 EDPDTLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI 406 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R + + + + + + K A+ L ++L K K Sbjct: 407 LGDNQRAILTSELSTHMGDRNRHRLEQDVAKANQHKAGAK----------LDFTALNKAK 456 Query: 476 LSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +S ++ L++ P I E A L L + LF + + Sbjct: 457 ISPI-----RMMIRLLLDQPGIAIECQHANPAALGDMQVPGLDFL-NELFQFCLGKPSAN 510 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + + + L +L E + ++ + A + Sbjct: 511 TAQVLEHFRDHPQSKNLAKLLGW-----------EYAEENQALVFKDSFAKLLDWHF-KS 558 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI 618 + +E+ + + ++ L+ Sbjct: 559 RMDELMSKARLGNLSVDEKQELNLL 583 >gi|58337479|ref|YP_194064.1| DNA primase [Lactobacillus acidophilus NCFM] gi|227904115|ref|ZP_04021920.1| DNA primase [Lactobacillus acidophilus ATCC 4796] gi|58254796|gb|AAV43033.1| DNA primase [Lactobacillus acidophilus NCFM] gi|227868134|gb|EEJ75555.1| DNA primase [Lactobacillus acidophilus ATCC 4796] Length = 616 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 147/654 (22%), Positives = 287/654 (43%), Gaps = 55/654 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P +FI ++ ++ I ++I QYV +++ DY CPFH EKTPSF N+ K F Sbjct: 4 RIPEEFIAEVRNNVNIVDVISQYVSLEKKGK-----DYIGLCPFHQEKTPSFTVNEEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV+++A A + +P ++++ Sbjct: 59 FKCFGCGKGGNVFKFLMYKDNLTFPESVEQVAEYAHMSMPEGYGNSSPV--KLNPIMQMH 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ L + +R Y +R + + FK+GYAP L +LR KG+ + Sbjct: 117 RDAVEFYQQVLFTTKAGERGMQYAQKRELGRDILNHFKIGYAPKEDNVLITYLRGKGYKD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + ++GL + + +DRFR+RL+FP+ + G I F GR +S ++ KY+NSPET Sbjct: 177 DDLTQSGLFVQSQDG-QLFDRFRDRLMFPLDNENGMTIGFSGRRISDDKTEAKYMNSPET 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K K L++F A + + ++L EGYMDV++ +AG+++ ++S+G Sbjct: 236 GIFNKSKVLFHFAEAKKAAR----------DENHLVLYEGYMDVIAAYKAGIKSGIASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LT+ Q+ +L +++ I++ +DGDDPG+ A +A++L + V+L DP Sbjct: 286 TSLTDDQVYMLRRVTSNIIINYDGDDPGIHAEERAVNLFNK--DGDFNLGVVVLPEKLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YG + + +L + KR + + + E+ I+ +++ Sbjct: 344 DEYVKKYGAEKYYDEVKGALTPTEFFLKRLAQKYNLDNDREKLTYISEAVKQISLVRNPV 403 Query: 420 LRYYYSQAIRD----RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + + + L E R + ++++ S + + + + Sbjct: 404 EQDMYIERLAKSAQVSIDALKANLARERRKNNRVQSRTRQYKNYPNRSNNTVDTLIPPEQ 463 Query: 476 LSK--------KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + LL I+ + + + + E +KL Sbjct: 464 PIELSIKQTEVEKHPSQTRLLYLFIHSTEAQKYLLN--GNFHFPDKEFEKLAELWVKYSE 521 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + E+ L + DA L T+ NI ++ + + Sbjct: 522 THNDPQINGFLDFIPEQ--------LQGIIIDAELAKTPTDFNIQEINEHVHA-----LK 568 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R + + E++ ++ K +A++ + + + + EA E F Sbjct: 569 KRNIYSRLNELQIELQDAKRKEDAQEIIKITQEILGLKRIL------EANKEAF 616 >gi|172036476|ref|YP_001802977.1| DNA primase [Cyanothece sp. ATCC 51142] gi|171697930|gb|ACB50911.1| DNA primase [Cyanothece sp. ATCC 51142] Length = 652 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 154/649 (23%), Positives = 295/649 (45%), Gaps = 34/649 (5%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 MN+P D ++++ I I ++ YV +R N Y CPFH EKTPSF N Sbjct: 9 MNFPRLHPDTLEEVKEKIDIYEVVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 63 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 +K YYCF C G+ + FL + SF + V LA VP+ ++P+ ++ + Sbjct: 64 TKQLYYCFGCGEGGNGIKFLMEIGQQSFTQVVLELAKRYQVPIKTLEPEKRQEIQKELSL 123 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ + ++F+ H+L+ + Y +R + I+ F LGYAP +L + Sbjct: 124 RDQLYEIVALTSNFYEHALQEPLGENALNYLTQKRLLKFQTIQQFNLGYAPSGWETLYRY 183 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QK + + +AGL+ YD FR+RL+ PI+ +G++IAFGGR+L E Sbjct: 184 LVEQKRYPIALVEQAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRIIAFGGRSL-TDEEP 242 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSP+T LF+KGK L+ A N ++ S +I+VEGY D ++L +AG+ Sbjct: 243 KYLNSPDTPLFNKGKILFALDQAKNSIR----------SLDKVIVVEGYFDAIALHEAGI 292 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTA +E QL+ L + + +++ FD D+ G++A +AI ++ + Sbjct: 293 TNTVASLGTAFSESQLKQLLRYTDSKQVIFNFDADNAGIKATQRAITEIESLIYSGQVNL 352 Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + G+D D FI+ + +++LI ++ ++ ++ +++ D ++ Sbjct: 353 KILNIPDGKDADEFIKSHSDGVEKYQELIEKAPLWLNWEIQQLLIDKNLKQADHFEQVAQ 412 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + +N + D R YY + L Q + + + + + + + + Sbjct: 413 GMVKLLNKLSDNNQRSYYISYCAELLAQGDARILPLYIKNLQTQLNKPLTKAAQKKTDKT 472 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524 V + + E LL I++P QE + +L D + + ++ + +W L Sbjct: 473 FIKPEVSTE-NNLLKEAETILLKIYIHYPECRQEIFNKLEDNNLCFSLSDHRIIWHNLLE 531 Query: 525 DFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + Q + + + L Q+ ++ D + + + A Sbjct: 532 IEEDTLNTTNDNNEQFISKLEIKMVELSQIVNKIYDLLNFREIEQYEDSNRLNLIIDAAL 591 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + L + E++ ++ + + ++ +I Q++ Sbjct: 592 ISLKKVNLEKYCLYCEQKYKKINPQEDPVNYQYYLNEYISSRQKILQLQ 640 >gi|53715231|ref|YP_101223.1| DNA primase [Bacteroides fragilis YCH46] gi|60683165|ref|YP_213309.1| putative DNA primase [Bacteroides fragilis NCTC 9343] gi|52218096|dbj|BAD50689.1| DNA primase [Bacteroides fragilis YCH46] gi|60494599|emb|CAH09400.1| putative DNA primase [Bacteroides fragilis NCTC 9343] Length = 667 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 57 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 117 NNFARDYFQNILKNHIDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R++FP+ + G+V+AFGGR LS KY+NS Sbjct: 177 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 236 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 286 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 343 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 403 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 462 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ ++ + +++ Sbjct: 463 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 522 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S +Q++ + + +L Sbjct: 523 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 581 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + + Sbjct: 582 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 641 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 642 VMQRYKEMK----EIQNLMA 657 >gi|168494505|ref|ZP_02718648.1| DNA primase [Streptococcus pneumoniae CDC3059-06] gi|221231816|ref|YP_002510968.1| DNA primase [Streptococcus pneumoniae ATCC 700669] gi|183575620|gb|EDT96148.1| DNA primase [Streptococcus pneumoniae CDC3059-06] gi|220674276|emb|CAR68817.1| DNA primase [Streptococcus pneumoniae ATCC 700669] Length = 586 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG+++ V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIESAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|332974450|gb|EGK11374.1| DNA primase [Kingella kingae ATCC 23330] Length = 587 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 178/618 (28%), Positives = 276/618 (44%), Gaps = 54/618 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P +FI DLL I ++I QYV + N Y ACCPFH EK+PSF + +K FY Sbjct: 2 IPHEFIDDLLARTDIVDIIDQYVPLKKGGAN-----YMACCPFHKEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-------EKIQT 115 +CF C G + F+ G SF+E+VQ LA G+ +P V + + ++ Q Sbjct: 57 HCFGCGAHGSAIGFVMEHQGLSFVEAVQMLADRVGMTVPNVRSETSESTAQRAARKQQQQ 116 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +++ A +F+ L ++++ Y+ +RG+ E + +GYAPD L + + Sbjct: 117 TLENIVQAACEFYRQQL--PQNQQAIDYVKKRGLSREIAEHYGIGYAPDGWQPLAQIFQ- 173 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + DN YDRFR+RL+FPIR+ GQVI FGGR L KYLN Sbjct: 174 ---PYPSAPLVDSGMVLDNEGKHYDRFRHRLMFPIRNVSGQVIGFGGRVL-DDSKPKYLN 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGKNLY + A ++ R I++VEGYMDV++L Q GV V Sbjct: 230 SPDTPLFDKGKNLYGLYEARQAIKDVGR----------ILVVEGYMDVVALAQFGVGYAV 279 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T +++L++ + + CFDGD G +AA++A++ L L +NF+ L Sbjct: 280 AALGTATTADHIKMLFRQTDSVYFCFDGDAAGRKAAWRALENALPQLKDDKSLNFLFLPE 339 Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R +GK FE+ L+ ES PL W T N +T + +AEL H +N Sbjct: 340 EHDPDSFVREFGKARFEEALLHESKPLSAYFWDALTANLDMHTQEGKAELVNHATPLLNQ 399 Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + L Y Q + + A+ S R + + Sbjct: 400 ITQASALAYLLKQELSAKTGIDPSNLAYLMGQAAPRRHVEAKSYKLPRESSRPTAAISLI 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + L E + P ++E L L + E Sbjct: 460 QKQIRTLLLNEKW--AQYVAFPDYFAL-----------DSEYACLV-ALAKFYREHPNAT 505 Query: 534 PEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQA--------LAL 584 + + E+L + ++D S + A + + G + + Sbjct: 506 MSRALEYFRDSAHDEILTFICRHTMQDEQEISDNSPAKCQEFQDGMTRLTLDLKTAQINR 565 Query: 585 YKRFRLLSRQKEEIEKQI 602 ++ LS ++ + Q+ Sbjct: 566 LRQKENLSADEKRLLVQL 583 >gi|148998338|ref|ZP_01825780.1| DNA primase [Streptococcus pneumoniae SP11-BS70] gi|168576203|ref|ZP_02722097.1| DNA primase [Streptococcus pneumoniae MLV-016] gi|307067746|ref|YP_003876712.1| DNA primase [Streptococcus pneumoniae AP200] gi|147755735|gb|EDK62780.1| DNA primase [Streptococcus pneumoniae SP11-BS70] gi|183577908|gb|EDT98436.1| DNA primase [Streptococcus pneumoniae MLV-016] gi|306409283|gb|ADM84710.1| DNA primase (bacterial type) [Streptococcus pneumoniae AP200] gi|332200549|gb|EGJ14621.1| DNA primase [Streptococcus pneumoniae GA41317] Length = 586 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|111657921|ref|ZP_01408631.1| hypothetical protein SpneT_02000897 [Streptococcus pneumoniae TIGR4] Length = 591 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 122 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 182 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 406 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPVTKQLSAI 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 508 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELERLISQKRRME 591 >gi|110597026|ref|ZP_01385315.1| DNA primase [Chlorobium ferrooxidans DSM 13031] gi|110341217|gb|EAT59682.1| DNA primase [Chlorobium ferrooxidans DSM 13031] Length = 631 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 174/652 (26%), Positives = 285/652 (43%), Gaps = 43/652 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I D+ I ++I Y+ N Y A PF EKTPSF + K Y Sbjct: 2 IPHTAIDDVRQAADIVDIISDYLTLQPSGRN-----YKALSPFTREKTPSFVVSPEKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ SF+ + SF E+V+ +A AGV + K E+++ + + Sbjct: 57 KCFSTGKGGNVFSFIMEMEKVSFPEAVELVAKRAGVDISRFTEKKEREKPGEESRTETLR 116 Query: 123 VATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FFH +L+ + K Y ERG+ I F LGYAP+S L ++ +E Sbjct: 117 WAAKFFHQTLQGSEGKTASVYLGTERGLSEKTIRSFGLGYAPESWEHLFNAAKRSAIPQE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 +++ GL+ + YD FRNR+IFP+ S GQV+ FGGRTL KYLNSPE+ Sbjct: 177 HLVDLGLITHNKQRNSWYDTFRNRVIFPVFSVGGQVVGFGGRTLGNDPHAPKYLNSPESA 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY A N +++ ILVEGYMDVL+L QAG+ N V+S GT Sbjct: 237 LFEKSKLLYGLHAAKNEIRRM----------ESAILVEGYMDVLALHQAGITNAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT YQ ++L + + R++ +D D GL++ I+ L G V+L G+DPD Sbjct: 287 SLTRYQAKILQRYTRRVLFIYDADPAGLKSMITGIE---TLLAEGITPFVVMLPSGDDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLV-DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SFIR G+ F + + + +E+ F P+E++ + + I I D+ Sbjct: 344 SFIRREGREKFLQFTEAEKLQFLEFQIRFFSESGDFEQPEEKSRSIRSMVHTIALIPDRI 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y Q + ++L + K + ++++ V +++K+ Sbjct: 404 QQELYLQELAEKLSISHSALLELLGKQLEAEGKKSVSQERRTEVT-------VPKRVNKE 456 Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530 S+ E L L+ A+L+ + + Q++++ + + E ++ Sbjct: 457 LSVLEKTFLKALLESTGYGNAVLEFAASHEEMLELSHPAAQQIFTHMIRRYHEIEGNPEE 516 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588 + +L L + W ++ + ++ L +K Sbjct: 517 RIDIASEISQFSTPESRDLASGLMMDQPVSNKWHELSDVHAESAKRCLAMFLDAFKNLIL 576 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQEAMIE 639 L RQK I ++I + EK L+ + +I + + + MIE Sbjct: 577 EPLIRQKTAITEKIR---IENNTEKEKELLMEKVAMDNKIGKTTKELKTMIE 625 >gi|238024933|ref|YP_002909165.1| DNA primase [Burkholderia glumae BGR1] gi|237879598|gb|ACR31930.1| DNA primase [Burkholderia glumae BGR1] Length = 628 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 174/660 (26%), Positives = 285/660 (43%), Gaps = 69/660 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------------DP 105 +CF C G + FL G +F E+V++LA G+ +P P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVEQLAQSVGLSVPREPSPMRGGGGYGGHGGEGAP 116 Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + + T L +++ A D++ L+ YL +RG+ F LGYAPD Sbjct: 117 LPAVSKSLTTALTDVMQTACDYYRKQLRG--APNAIQYLKKRGLTGEIALRFGLGYAPDG 174 Query: 166 RYS---LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + E R++ E ++ D +A YDRFR R++FPIR+ +G VI FGG Sbjct: 175 WQNLEEAFEDYRREELVEAGLVIVSEKTDAQGAARRYDRFRERIMFPIRNVKGAVIGFGG 234 Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 R L GE KYLNSPET LF+KG LY F A ++ + ++VEGYMD Sbjct: 235 RVLDSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMD 283 Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 V++L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 VVALAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDSAGRRAARRALEACLPHA 343 Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 + F+ L DPDS++R +G AF + + ++PL L ++ + P+ RA Sbjct: 344 ADNRTIRFLFLPAEHDPDSYVREFGADAFSEQVRRAMPLSQFLLNEAIRDKELDQPEGRA 403 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 + K + + LR DRL F++ + R + Sbjct: 404 KALFDAKPLLQALPANALRAQIMHMFADRLDIPFEEVASLSEVDARIPAPLRQ------- 456 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 ++ + +E L LI HP I + +L+ + Sbjct: 457 --------APARNDRRRVTDQEKRALRNLIMHPRIAMLLDDDEIATLRGLPRNGELFDEV 508 Query: 523 FSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDV 574 LP+ + + E+++++ D VRD A V Sbjct: 509 LGHARALGDAAEFRLLPDVLRSSANAETYDEIIREILDYDENVRDLMSDPAEDGEAQETV 568 Query: 575 RQGYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 R+ + +A L R+ + + E+ ++++ + + AE L E+ ++ Sbjct: 569 RERERIAGEELKAAVLKMRYDACNDRCNEL-ARLSKPSPEELAELVV-LNRARTEMKARL 626 >gi|300703498|ref|YP_003745100.1| DNA primase [Ralstonia solanacearum CFBP2957] gi|299071161|emb|CBJ42475.1| DNA primase [Ralstonia solanacearum CFBP2957] Length = 603 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 178/643 (27%), Positives = 284/643 (44%), Gaps = 59/643 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117 +CF C G + FL G S++E+++ LA AG+ +P +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A D + L++ YL RG+ F LGYAPD SL Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 284 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKIVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + +E+ P+ RA + K Sbjct: 344 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 404 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 462 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L Sbjct: 463 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 509 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V D + E + Q+ LA Sbjct: 510 VGPEVHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDVAVQKMLA---- 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + +++++ + +A+K + L E+ + Sbjct: 563 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVGEISRRRR 601 >gi|56461301|ref|YP_156582.1| DNA primase [Idiomarina loihiensis L2TR] gi|56180311|gb|AAV83033.1| DNA primase [Idiomarina loihiensis L2TR] Length = 581 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 166/626 (26%), Positives = 281/626 (44%), Gaps = 60/626 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ V + N ACCPFH+EKTPSF + K FY Sbjct: 5 IPKSFIHDLLERADIVEIVDSRVPLKKAGRNHQ-----ACCPFHNEKTPSFTVSQDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI---- 118 +CF C G+ + FL G +F ++V+ LA I GV +P P+ + + + + Sbjct: 60 HCFGCGEHGNAIDFLMEFDGLNFPDAVEELAGIMGVEVPREQPENPQLAQKKQQQMQDDS 119 Query: 119 RLIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ FF H LK+ + + YL RG+ ++ F++GYAPD+ L Sbjct: 120 ELMSKTARFFQHQLKHHENSNRVIDYLKGRGLSGETVKRFQIGYAPDAWDGLLSTFGSSA 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 ++++E L I+ + YD FR+R++FPI RG+V+ FGGR + KYLNSP Sbjct: 180 PQRQQLLELKL-INRNEKGRHYDFFRDRVMFPIHDRRGRVVGFGGRIIDGD-GPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHKG LY ++ ++K + +VEGYMDV++L +AG+ V+S Sbjct: 238 ETRLFHKGSELYGYWHMQQAVRKP----------EQVCIVEGYMDVVALSEAGIHYAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T QL+ L++ S RIV C+DGD G AA++A++ L L G + F+ L GE Sbjct: 288 LGTATTSEQLQRLFRTSGRIVCCYDGDRAGRDAAWRALENALPLLRDGLDMAFLFLPEGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS +R +G AFE+ + ++ P + ++ + ++ R++L K I + Sbjct: 348 DPDSVVREHGAEAFERELKKATPFTEYFFEHLQADIDVSSDAGRSQLLNIAKPLIEKVAS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R Q + ++L++ + + R + + Sbjct: 408 EYYRDTLMQRLAEKLRRETSQLERQFEKPQRQSRPKESVKMTPL---------------- 451 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ +P + Q +EL +++ + L L E + Sbjct: 452 -------RKAIALLLQYPQLAQSVPVREELRELQVSGID---LLIALHKQCAE-RQMTTA 500 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + + L++L + + +V Q + R Sbjct: 501 QVLEGWRDTEYYQPLQKLALW---------QHQLDEDNVEQEFNDIFIYLIDQYFEQRAN 551 Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL 621 ++K+ + E ++ LI L Sbjct: 552 ALLKKEQEGALTRVERQEYQTLIQYL 577 >gi|329906287|ref|ZP_08274383.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] gi|327547307|gb|EGF32146.1| DNA primase [Oxalobacteraceae bacterium IMCC9480] Length = 598 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 174/642 (27%), Positives = 289/642 (45%), Gaps = 68/642 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQSFIQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLI- 118 +CF C G + FL G F+++V+ LA G+ +P D P ++ E L Sbjct: 57 HCFGCGAHGTAIGFLIEYSGMGFVDAVKDLAQNVGMMVPESDDKMPPAQRAEYQAKSLAL 116 Query: 119 -RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A D + L+ +R YL RG+ F +GYAP+ SLR Sbjct: 117 SEAMTQACDHYRLQLRT--AERAKGYLIGRGLTGEIAARFGIGYAPEGWDSLRSVF--PD 172 Query: 178 FSEEKIIEAGLLIDGDN----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 + ++EAGL+ID + + YDRFR+R++FPIR+++GQVI FGGR L GE KY Sbjct: 173 YELTALVEAGLVIDRTDEEGGNRKRYDRFRDRIMFPIRNTKGQVIGFGGRILDSGEP-KY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF KG LY F A ++ + ++++ EGYMDV++L Q G Sbjct: 232 LNSPETPLFQKGSELYGLFEARQAIR----------DAGYVLVTEGYMDVVALAQLGFPQ 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV++LGTA T ++ L + + ++ FDGD G RAA +A++ L + + F+ L Sbjct: 282 VVATLGTACTAVHVQKLSRQTDHVIFSFDGDGAGRRAARRALEASLPYAADNKTIKFLFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDS++R +G FE+ + +++PL L K T++ T + RA+++ K + Sbjct: 342 PSEHDPDSYVREHGTAGFEQQVRDAMPLSQFLLKVVTDDNDLTTSEGRAKVQFDAKPLLQ 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR + + L + TE AR R +R L Sbjct: 402 AMPASSLRLQIVRELAQ----LTRTTPTEIETLFELASPAARVRAAPPRGKRTAPVGL-- 455 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531 E ++ L+ HP + E Q+ A + + + L + + Sbjct: 456 ----------ELQVMRLLVAHPVLASELDQDALDAMLHFVPDSAVMLMQLVVAGQEMGAQ 505 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L F ++ ++ A E++ R A+ Sbjct: 506 ASFAMLSEHLRAGGPEFDGMIAEVA----------AEPESDRDAARLELAGAVR------ 549 Query: 590 LLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQ 630 + + ++ ++ Q+ A G ++ L Q+ + Sbjct: 550 --QTKMKVLKAELDQLAAGGMGHDEARTRYRELTLKQEQLRR 589 >gi|289167834|ref|YP_003446103.1| DNA primase [Streptococcus mitis B6] gi|288907401|emb|CBJ22238.1| DNA primase [Streptococcus mitis B6] Length = 586 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 262/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G F+E+VQ L G+ + +K+ L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKQISPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLFQRLSGQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL ++ D F NR++FP+ + +G+V+AF GR K +S KY NS T Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVLAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P Q ++ K Sbjct: 401 QNSYIHILADSLASFDYVQIEQIVNESRQAQRQNRMEGISRP----TQITMPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASRVGDTDTALEELERLISQKRRME 586 >gi|15900941|ref|NP_345545.1| DNA primase [Streptococcus pneumoniae TIGR4] gi|14972547|gb|AAK75185.1| DNA primase [Streptococcus pneumoniae TIGR4] Length = 586 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 149/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFLEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|323464343|gb|ADX76496.1| DNA primase [Staphylococcus pseudintermedius ED99] Length = 595 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 152/637 (23%), Positives = 258/637 (40%), Gaps = 44/637 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I+++ I +++ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIPQNTIEEIKQQSDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119 +CF C G+ F+ + SF E+VQ L + + +I+ Sbjct: 56 ICHCFGCKKGGNVFQFIQEIENISFTEAVQHLGERVNIKVDIEETNDDMHIASDDLKMIQ 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E ++H+ LK ++ YL ERG I+ K+G+APDS + + + +KG+ Sbjct: 116 MHEEILSYYHYLLKKTVEGEQALNYLYERGFTDDMIDARKIGFAPDSSHFATDFMEKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + EAG+L D YDRFRNR+IFP+ +++G+++ + GRT + KYLNSPE Sbjct: 176 DLQLGYEAGILSRNDTDFNYYDRFRNRIIFPLANAQGRIVGYSGRT-YTEQEPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F K K LYN A +++ +IL+EG+MDV+ AG++NVV+S+ Sbjct: 235 SPIFQKRKLLYNLSEARKSIRQK----------DEVILLEGFMDVIKADDAGLKNVVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT L+ + L KL + L FDGD G+ A K L V V L D Sbjct: 285 GTQLSNEHITFLKKLCSHVTLMFDGDFAGIEATMKTGQ---QLLQQQFNVYVVQLPSKMD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I YG F + ++ ++ N + I Sbjct: 342 PDEYIMKYGAEKFNSFVNTEKKAFVSFKLQQHQHEIQNNDLAYEKYYHMFVEDAALISSH 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR Q + + E +Q + Sbjct: 402 ILRNKVVQNASELFKVSADSLNKEVESVHPQQHFEQAGPIPIQTTQWM---------QHN 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E A+L I + YQ++ + + N ++++ L + + F E Sbjct: 453 KYEKAERAILKHFIMDKEVFLSFYQDIDETDFTNEYFKRIFITLREFYSKFDSFTMSEFV 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+L L + Y Q + ++ E + Sbjct: 513 TYIDHDILKEVLIYLWDY--------PLNREPYENEIADYIQVMTEHRYSES----IESL 560 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +++ + T G+ + + V+ +++SQE Sbjct: 561 HEKLREATRVGDIA-SQKYFLEMI-VNKNRARLKSQE 595 >gi|160881642|ref|YP_001560610.1| DNA primase [Clostridium phytofermentans ISDg] gi|160430308|gb|ABX43871.1| DNA primase [Clostridium phytofermentans ISDg] Length = 596 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 148/607 (24%), Positives = 269/607 (44%), Gaps = 28/607 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP + ++++ I ++IG YV +R N + CPFH+EK+PSF + SK Sbjct: 1 MYYPEELVEEVRERNDIVDVIGSYVKLQKRGAN-----HMGLCPFHNEKSPSFSVSGSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C V G+ +FL +F+E+++ L AGV LP + +K ++T ++ Sbjct: 56 MYHCFGCGVGGNVFTFLMEYENYTFVEALKVLGDRAGVKLPELEYSEEAKKAADLKTRVL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + A ++++ L++ + + YL RG+ I F LGY+ L +++++ G+ Sbjct: 116 ELYKEAGKYYYYQLRSKQGEEALAYLRNRGLSEEIITKFGLGYSTKYSDDLYQYMKKAGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + ++GL S +YD+F NR++FPI +VIAFGGR + KYLNSPE Sbjct: 176 EDSLLRQSGLFTME-ESKGAYDKFWNRVMFPIMDGNNKVIAFGGRVM-GDGVPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K +NL+ A + + ++ EGYMDV++L QAG QN V+SL Sbjct: 234 TIVFDKSRNLFGLNFAR------------TSRKDYFLICEGYMDVIALHQAGFQNAVASL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q RLL + + L +D D G+ AA +AI + G + + +D Sbjct: 282 GTAFTPQQARLLSRYTKEAYLTYDSDGAGVAAAIRAIPI---LKEAGLSAKVIDMKPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G ++ I +++ + P+++ + + + ++ Sbjct: 339 PDEFIKALGAEEYQNRIDQAMNSFFFEISVLERDYDLGDPEQKTKFFNEMAKKLLIFTEE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ + + + RY + K R + + KGK + Sbjct: 399 IERNNYIEALSRKYNVSYDNLRKLVN---RYGAQMTVVNVAKETRDREKEQNAKKGKPEE 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LL LI+ + + + +++ + +F + + P +I Sbjct: 456 GMQKSQKILLTWLIDDSKAFDQIRGIITADDFTEELYREVANMVFEQYESEHKVTPAKII 515 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEE 597 R + + L + A D ++A L + + + Sbjct: 516 NRFESKELQTEVAGLFSTSIQLEMTEAERRKLFADTVVRVKRASLDIAYKKAIEDNDIMA 575 Query: 598 IEKQIAQ 604 ++ + + Sbjct: 576 LQNVMKE 582 >gi|306818280|ref|ZP_07452009.1| DNA primase [Mobiluncus mulieris ATCC 35239] gi|304648925|gb|EFM46221.1| DNA primase [Mobiluncus mulieris ATCC 35239] Length = 688 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 151/705 (21%), Positives = 254/705 (36%), Gaps = 99/705 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + IPI ++G YV R N CPFHDEKTPSFH Sbjct: 4 KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F+E+++ LA AG+ L V+ + + L Sbjct: 60 WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + + +++ R S F +GYAP +L HLR G Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235 F++ +I GL S YD FR+R+ +PIR + G V+ FG R L + KY+N Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + + R ++VEGY DV++ +GV V Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287 Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335 ++ GTA T R++ ++ FDGD G +AA KA Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + G DP G A L+ PL + + K Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + R I+D+ LR Y + L ++ + G++ + ++ Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464 Query: 456 HRDQKGPSQR-----------------------------------LMQSSLVKGKLSKKP 480 G S+R + L G + Sbjct: 465 EARGAGLSRRSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524 Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526 E L+ ++ PA+ E + L+ + L+ ++ + Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVILAAGGVAEYARLQTEAA 584 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 P R + L V D + D + + Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L+R+ + ++ ++ A E+ + + L E+ Q+ + Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684 >gi|149006255|ref|ZP_01829967.1| DNA primase [Streptococcus pneumoniae SP18-BS74] gi|307127397|ref|YP_003879428.1| DNA primase [Streptococcus pneumoniae 670-6B] gi|147762032|gb|EDK68994.1| DNA primase [Streptococcus pneumoniae SP18-BS74] gi|306484459|gb|ADM91328.1| DNA primase [Streptococcus pneumoniae 670-6B] gi|332075027|gb|EGI85498.1| DNA primase [Streptococcus pneumoniae GA17545] Length = 586 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 260/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ + G++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|260886855|ref|ZP_05898118.1| DNA primase [Selenomonas sputigena ATCC 35185] gi|260863454|gb|EEX77954.1| DNA primase [Selenomonas sputigena ATCC 35185] Length = 594 Score = 344 bits (882), Expect = 3e-92, Method: Composition-based stats. Identities = 165/630 (26%), Positives = 275/630 (43%), Gaps = 45/630 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F++ + I ++ YV ++ YW CCPFH E TPSF +GF+YC Sbjct: 7 DAFVERVRADSDIVAVVSSYVALKKKGN-----RYWGCCPFHHENTPSFSVVPEQGFFYC 61 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRLIE 122 F CHV G+ FLS + + E+++ A +PLP + + ++K +L R+ E Sbjct: 62 FGCHVGGNVFKFLSLIENIPYFEAIKLQAEKLNIPLPERERSAAEIARDKKAEELRRVHE 121 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A FFH+ L K + YL RGI IE F +GYAP + L ++G Sbjct: 122 MAQTFFHNCLTKTHYGEAAKAYLAGRGIGESVIEAFGIGYAPPAWDKLAVAFEKRGVPAA 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + E+GL A YDRFRNR+I PIR +RG+V+AFGGR L KYLNSPET++ Sbjct: 182 LLEESGLAAKRQKGAGHYDRFRNRVIIPIRDARGRVVAFGGRIL-GDGEPKYLNSPETLI 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + L+ A + + + F ++VEGYMD +S+ AG++NVV+SLGTA Sbjct: 241 FNKRRLLFGLDRAHRAIAR----------AGFAVVVEGYMDAISVAAAGIENVVASLGTA 290 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 Q +LL + +P + C+D D G A +A+ + G V + + G+DPD Sbjct: 291 FAAEQAKLLLRYAPEVRFCYDSDAAGQEATLRALSVAR---AAGATVKVLRVPDGKDPDE 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +IR +G+ AF KL+ +LP ++ R E + R + L + +K Sbjct: 348 YIRKHGEAAFRKLVEAALPFIEYRMVRVLETADKESLQGRLDTLAALLPVLAEVKSPAEL 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y L E A R+ + + L + Sbjct: 408 DGYIVRTARELTLDEGLIRAELGRAAGSSAPPAAVRETTRRAFKKADDILQRAG------ 461 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 +L T + PA+ + + + E K ++L+ + + L Sbjct: 462 ---RIVLRTAWHDPAVTEHIASLVPFEAFSTEEQAKALAWLYGLHLAGERPTDARAQAEL 518 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E E+ + L + +D + Y ++ +R L++ EE ++ Sbjct: 519 SEAVATEISRSLA------------EDTGTMDALEAYDDSMRRLRRAY-LAQLFEEHTRR 565 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + +A + ++ + + ++ + Sbjct: 566 ADRWEKENDA-RFLQELAQIQRIKNEMEGL 594 >gi|254000082|ref|YP_003052145.1| DNA primase [Methylovorus sp. SIP3-4] gi|253986761|gb|ACT51618.1| DNA primase [Methylovorus sp. SIP3-4] Length = 584 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 162/624 (25%), Positives = 279/624 (44%), Gaps = 48/624 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + I ++I + V + N Y ACCPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LIR 119 +CF C G + F+ G SF+E++ LA G+ +P + + + ++ Sbjct: 57 HCFGCGAHGSAIGFVMEYQGLSFVEAINELAKQVGMIVPQETRERDTDAPQKKAVPGMVE 116 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A ++ LK + +R YL RG+ F++GYAP +L+E Sbjct: 117 AMQQAVLYYRGELKKS--QRAIEYLKGRGLSGQIAARFQMGYAPSGWQNLQEVFSDYQDD 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLNS 236 K I + + YDRFR+R++FPI +GQVI FGGR L + KYLNS Sbjct: 175 VLKSIGL---VIENEQGRRYDRFRDRVMFPIHDQKGQVIGFGGRVLGTEGNDDGPKYLNS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG+ LY F A ++ + R +++VEGYMDV++L Q G++ V+ Sbjct: 232 PETPLFQKGQELYGLFLARRAIRDAGR----------VLVVEGYMDVVALAQYGIEYAVA 281 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T + L + + IV CFDGD G +AA++A L L G R++F+ L Sbjct: 282 ALGTATTPVHITKLMRQTDEIVFCFDGDAAGRKAAWRAAMNALPALTDGLRLSFLFLPAE 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R YGK AFE + +LPL L + +E+ + +++ + + I+ Sbjct: 342 HDPDSYVREYGKEAFEAAMQTALPLSQYLIQHLSEDNGLQSQEDKVRFLNEAEPILAQIQ 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +L + + + ++ + + ++ R + Sbjct: 402 APRLALLLRKRVAELAGLSDEEMRSMIRLPEVQRPRRSQPRQTRSTLS------------ 449 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + +L ++ PA++ +LA + +++ E L V P Sbjct: 450 ------LQRRFVLMVLMQPALVSP--DDLAWVLHESEE-DALVKHALEAAVAYPSAKPAG 500 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +L R L+++L+R++ R+ + A + LL+R +E Sbjct: 501 LLLQLQNRVDARLMRELEREI-HLLDEQVDYSLEFEGARKQLRDMYAERQGKTLLARMQE 559 Query: 597 EIEKQIAQVTAKGEAEKTAILISI 620 + + + + Sbjct: 560 KKISDMTEQEKALLKAMVGATKNR 583 >gi|22298860|ref|NP_682107.1| DNA primase [Thermosynechococcus elongatus BP-1] gi|22295041|dbj|BAC08869.1| DNA primase [Thermosynechococcus elongatus BP-1] Length = 694 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 168/664 (25%), Positives = 280/664 (42%), Gaps = 71/664 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + + I +++ ++V +R +Y CCPFH+EKTPSF + KGF Sbjct: 5 RLHPDTIEAVRQAVNIVDVVAEHVVLRKRGR-----EYVGCCPFHEEKTPSFTVSPLKGF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117 YYCF C G+ + FL L SF E V LA +P+ +D + ++ + + L Sbjct: 60 YYCFGCGAGGNAIKFLMELQKRSFAEVVLDLAQRHQIPVRTLDSEQKQALQARLSLQEQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ +AT F+ H+L+ + YL + I+ F+LGYAP L + + Q Sbjct: 120 YEILAIATSFYEHALRQPIGQAAQDYLQRQRHLKEETIQQFRLGYAPAGWQVLYTYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 KG+ + +AGL++ YDRFR+RLI PI ++G+V+ FGGRTL E KYLN Sbjct: 180 KGYPAALVEQAGLIMPQRTGDRYYDRFRDRLIIPIMDTQGRVVGFGGRTL-SNEEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+KG+ L+ A + + I+VEGY DV++L QAG V Sbjct: 239 SPETPIFNKGQLLFGLDKARQAIA----------QTDQAIVVEGYFDVMALHQAGFPQTV 288 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 +SLGTAL++ Q++LL + + +I+L FD D G RAA +AI + R+ + Sbjct: 289 ASLGTALSQAQIKLLLRYTESKQIILNFDADKAGQRAADRAIGEAADLVYRGDLRLRILT 348 Query: 353 LSRGEDPDSFIRCY------GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 L G+D F + A++ L+ ++ +D + + D+ + Sbjct: 349 LPAGKDAADFFTVDEATLAARRAAYQTLLDQAPLWLDWQIQTLVQQYDLEQGDQFQQASQ 408 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 L + + + LR +Y + L + + R + R + QR Sbjct: 409 ALSELLAKLPNATLRSHYIHHCAELLGRHDSRLTLHLEEALRQQVRGYRWPGRSQKWQRP 468 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFS 524 +L + E LL ++ Q L DI + + + LW + + Sbjct: 469 ADYNLRQA--------AEEQLLRLYLHRGEYRPLIRQTLQARDIEFSLSHHRWLWRQILA 520 Query: 525 DFVE--QKYFLPEE--------------------------IHQRLCERGFGELLKQLDRQ 556 E P++ + RL E L+ L Sbjct: 521 VEEEHCGGRPDPDDPYNAEWPLHSPTEAGTQLTDLDLVSHLFDRLDEAEDASLITPLLHL 580 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTA 615 + I ++ + + K R L + +EI I ++ A + + Sbjct: 581 DETTASGLDRPKLVIEAAAAALER-ITIEKECRYLLQSWQEIVALILSESPATEDLRRYL 639 Query: 616 ILIS 619 LI+ Sbjct: 640 PLIN 643 >gi|91788956|ref|YP_549908.1| DNA primase [Polaromonas sp. JS666] gi|91698181|gb|ABE45010.1| DNA primase [Polaromonas sp. JS666] Length = 660 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 176/666 (26%), Positives = 281/666 (42%), Gaps = 99/666 (14%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ FI++LL + +++G++V + N + CPFH EK+PSF + SK Sbjct: 1 MAIPQSFIQELLARADVVDIVGRHVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQ 114 FY+CF C G+ +SFL G SFIE+V+ LA G+ +P D K + + Q Sbjct: 56 FYHCFGCGKNGNVISFLMEHAGMSFIEAVKDLAQQYGLQVPEDDVSPQDRAKAAQMREQQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + L+ + +R Y RG+ F LGYAP+ SL Sbjct: 116 ATLTSVLEKAAMAYIKHLRGS--ERAIEYFKGRGLSGEIARTFGLGYAPEGWRSLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDGDN-------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 +++ ++E+GL+I G+ A YDRFR+R++FPIR+ +G+ I FGGR L Sbjct: 173 -PDYNDPLLVESGLVITGEAGEENAGGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-G 230 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 E KYLNSPET +F KG+ LY F A L+ + ++ EGYMDV++L Sbjct: 231 DEKPKYLNSPETPVFSKGRELYGLFEARTALR----------EHGYALVTEGYMDVVALA 280 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G N V++LGTA T ++ L++ + +V FDGD G RAA KA+D L Sbjct: 281 QLGFANAVATLGTACTADHVQKLFRFTDSVVFSFDGDGAGRRAARKALDAALPFATDVRT 340 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 V F+ L DPDS+IR +GK F + +++PL L + E +T + RA + + Sbjct: 341 VKFLFLPSEHDPDSYIREHGKEGFAAYVSKAVPLSRFLLEAAAEGCDLDTAEGRAHMASN 400 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG------ 461 + + + D L+ I D++ ++ + +K + ++ K Sbjct: 401 ARPLWSLLPDGALKRQLLAEIADQVMIDSRELLQLWQPASAGYKNSYKNNSSKRLPNKDH 460 Query: 462 ----------------------------------PSQRLMQSSLVKGKLSKK-------- 479 P S + S Sbjct: 461 RPDLPSDFGKNHDVPDYAGYVPDLREEADYASSEPYFPPPAMSAQRPGRSSGGASRAPRR 520 Query: 480 ------PSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYF 532 P+ RE +L L+ P + E + L+ +L S E Sbjct: 521 IAGRILPASREDRVLRLLLTEPQSWDQLSTEEHHLLLALPAPHGPLFVWLESQLHEHGPQ 580 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L E + E + +VR Q + L ++ Sbjct: 581 PWAALREGLREHPHE------KHAIAQIAQIPEGIECDWDEVRSILDQLVRLERQ----- 629 Query: 593 RQKEEI 598 R+ +E+ Sbjct: 630 REMDEL 635 >gi|312795732|ref|YP_004028654.1| DNA primase [Burkholderia rhizoxinica HKI 454] gi|312167507|emb|CBW74510.1| DNA primase (EC 2.7.7.-) [Burkholderia rhizoxinica HKI 454] Length = 635 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 179/660 (27%), Positives = 280/660 (42%), Gaps = 63/660 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FSGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------------D 104 +CF C G + FL G +F E+V LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVGELAQSVGLTVPHEPAPGAYGGGSPPGPGSGTD 116 Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD 164 P + L+ +++VA D++ L+ YL RG+ F LGYAPD Sbjct: 117 PPPANAGTARA-LVDVMQVAADYYRKQLRG--APDAIQYLKRRGLTGEIALRFGLGYAPD 173 Query: 165 SRYSLREHLRQKGFSEEKI---IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 +L + + A YDRFR R++FPIR+ RGQVI FG Sbjct: 174 GWQNLESAFADYRDDALLEAGLVIVSDKASSNGEARRYDRFRQRIMFPIRNVRGQVIGFG 233 Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 R L G KYLNSPET LF+KG LY F A ++ F+++VEGYM Sbjct: 234 ARVLDDGGEPKYLNSPETPLFNKGTELYGLFEARLAIR----------EKGFVLVVEGYM 283 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 DV++L Q G N V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 284 DVVALAQLGFPNAVATLGTACTPVHVQKLMRQTDTVIFSFDGDVAGRRAARRALDACLPH 343 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401 + F+ L DPDS+IR +G AF I ++PL L ++ + P+ R Sbjct: 344 AADNRTIRFLFLPAEHDPDSYIREHGMQAFADQIGRAMPLSQFLLNEVLADKEIDQPEGR 403 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT------EHSGYGRYWKKNAR 455 A+ K + + LR + DRL ++ + R A Sbjct: 404 AKALYDAKPLLQALPPNALRAQILHMLADRLATPVEEVAQFCEIGSRTAPAVRGAPARAD 463 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE---QYQELADIRYDN 512 R G R +++ ++ ++ +++ L TL A+ E ++L D Sbjct: 464 RRRVTGHEHRALRNVIMYPRIVAMLDVQDCDTLATLARQGALFAETIAHARQLGDAA--- 520 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 E + L L + EEI + + + E ++ L D SA Sbjct: 521 -EYRLLKDLLLN---SPNAPTYEEIFREIL--VYDENVRDLLHASPDDD--SAQRRDEQE 572 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIHQI 631 + +A+ R+ + E + +Q +GE + A L E+ + + Sbjct: 573 RIAADEVRAVVAKMRYDACCERLEILSRQ---PKLEGEQAREFAELSQRRAELKRRAMAL 629 >gi|148989115|ref|ZP_01820505.1| DNA primase [Streptococcus pneumoniae SP6-BS73] gi|148994180|ref|ZP_01823495.1| DNA primase [Streptococcus pneumoniae SP9-BS68] gi|168488914|ref|ZP_02713113.1| DNA primase [Streptococcus pneumoniae SP195] gi|169834027|ref|YP_001694497.1| DNA primase [Streptococcus pneumoniae Hungary19A-6] gi|147925338|gb|EDK76416.1| DNA primase [Streptococcus pneumoniae SP6-BS73] gi|147927423|gb|EDK78453.1| DNA primase [Streptococcus pneumoniae SP9-BS68] gi|168996529|gb|ACA37141.1| DNA primase [Streptococcus pneumoniae Hungary19A-6] gi|183572567|gb|EDT93095.1| DNA primase [Streptococcus pneumoniae SP195] gi|332073430|gb|EGI83909.1| DNA primase [Streptococcus pneumoniae GA17570] Length = 586 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 150/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K DL + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQDLYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|313888929|ref|ZP_07822589.1| DNA primase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845102|gb|EFR32503.1| DNA primase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 596 Score = 344 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 157/632 (24%), Positives = 275/632 (43%), Gaps = 43/632 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + ++ I +LIG+YVD R +N Y CPFH EKTPSF + SK + Sbjct: 4 INDNVLDEIRDRADIVDLIGEYVDLKRSGSN-----YMGLCPFHSEKTPSFSVSPSKSIF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C V GD ++F+ SF E+V+ LA V L V + ++ + + L + Sbjct: 59 KCFGCGVGGDVITFVMKRENLSFPEAVEFLADKYNVRLEVYKDENKEAREKRNRLYEINR 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F + ++ YL R + I + +GY+ DS L +HL + G+ E++ Sbjct: 119 EAGLHFLKN--YEASQKTQLYLKNRMLSDKTIRSYGIGYSKDSWTDLYDHLTKMGYREDE 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++E L I + DRFR+R++FPI + ++I FG R KYLNS ET +F Sbjct: 177 LLELNL-ISKSKNGNYIDRFRDRVMFPIINRNNRIIGFGARAF-GDAKPKYLNSRETPIF 234 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG N++N R ++ IILVEGYMDV+SL +G+ V+SLGT+L Sbjct: 235 HKGSNVFNIN-----------IISRESTRERIILVEGYMDVISLYNSGINYSVASLGTSL 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q ++ K++ I +C+D D G+ A +AID+ L + + L G DPD F Sbjct: 284 TIDQANIIKKMARDIYICYDSDSAGINATSRAIDI---FLQAAVKPKIIELEGGLDPDDF 340 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ YG FE I ++ ++ K+ EN + + + I ++ IK+ R Sbjct: 341 IKKYGIEGFENKIKSAISYIEFKIKKLKENFNLEDSEGLSNFTIESAKILSSIKNPIERD 400 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + + + R K + K + S + Sbjct: 401 IFVKNFSKKYNISYTAIENYINYLNRNKLKETKREKFKVKKNTNVVKSNK--------AR 452 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + LL + I + ++ + N + ++ + + E+ Sbjct: 453 AQEELLSYSLLDNDIYKYIRNKIEVFYFTNAMTRAVFEEIPRLYEEEMEV---------- 502 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 R F LL+ +R + + + + N + V L L +K +I + I Sbjct: 503 -RDFLSLLES-NRLIDKEFVENILSIINDIHVNDKIVDELINTIEGNYLRDRKNKILENI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ + + L E+++++++++ + Sbjct: 561 EKLQGEENKNLLLEALKELQEINLKLNELKEE 592 >gi|91203807|emb|CAJ71460.1| similar to DNA primase [Candidatus Kuenenia stuttgartiensis] Length = 599 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 151/637 (23%), Positives = 264/637 (41%), Gaps = 50/637 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++ I ++ I +I +Y+ + + CPFH EKTPSF N K + Sbjct: 5 IPQEKIAEIQFAADIVQIISEYIQLKQSGK-----AFIGLCPFHSEKTPSFFVNPDKKLF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 CF C G F+ G F+E+V+ +A+ + V L + +T L Sbjct: 60 KCFGCGEGGTVFQFVMKQEGMDFVEAVKLVASKSRVDLTQIYAKETSLSSSKKTHLYETT 119 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F+ L +A K+ YL +R I+ H+I+ F +GYAP SL + + S Sbjct: 120 RFAATFYQKMLLDAMKGKKARDYLLKRKINDHSIKNFCIGYAPAEWDSLVKMCKGGNVSM 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ +AGL+I + YDRFR+RLIFPI R QV+ FGGR L KYLNSPET+ Sbjct: 180 YQLQQAGLIIQKKERDSYYDRFRDRLIFPILDIRKQVVGFGGRAL-DDSLPKYLNSPETV 238 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K LY A + + K + +IL+EGY DV+ Q G++ V+ LGT Sbjct: 239 LFNKSNILYGIDIAKSAILKKQK----------VILMEGYTDVIMAHQHGIEWAVAVLGT 288 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+++ LR L + R++L D D G +++ + +D+ + V L +G DP Sbjct: 289 AISKQHLRSLRQYCSRVILLLDADSAGQKSSDRNLDI---FIEEEFDVKIAQLPKGYDPC 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+ G F I + + +T +A ++ D Sbjct: 346 DFLLAEGPEKFLSYIDSAKDFFHFKIEFAATKWDMSTVHGKANALNNVLATAMKTPDAIK 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + I + + + R A + +QK + Sbjct: 406 RNLLIKLISEEMSIDEAALWSHIKNVKRPLSVPANNNNQKTK------------QRLDAS 453 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S+ E +L +++ +++ E +DN + ++ + + + K E++ Sbjct: 454 SMAEREILYLMLSCNSLIPRIINEKIPEEFDNKDFLEIAGRIVEIYQKNKAVKEEDVLHS 513 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 + E +LL + + D R + + +KR ++++I Sbjct: 514 IGEARLNKLLVDIVTTREFQDMT---------DYRDRLEACILFFKRRN----RRKDIHI 560 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +K + + + E +L+ H+ IH +++ Sbjct: 561 TKKKMLETARSSHKEEDIVMLLEEYHKKSRNIHALKN 597 >gi|183602554|ref|ZP_02963919.1| DNA primase [Bifidobacterium animalis subsp. lactis HN019] gi|241190628|ref|YP_002968022.1| DNA primase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196034|ref|YP_002969589.1| DNA primase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218195|gb|EDT88841.1| DNA primase [Bifidobacterium animalis subsp. lactis HN019] gi|240249020|gb|ACS45960.1| DNA primase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250588|gb|ACS47527.1| DNA primase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793617|gb|ADG33152.1| DNA primase [Bifidobacterium animalis subsp. lactis V9] Length = 693 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 154/718 (21%), Positives = 256/718 (35%), Gaps = 103/718 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDE+TPSF+ S G + Sbjct: 5 IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119 +CF C GD F+ F E+V+ LA + L + + + L+ Sbjct: 61 HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF + L R F GYAP +L HL KGF+ Sbjct: 121 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++++AGL + YD FR R +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 181 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+HK + LY A + K +++VEGY DV+++ AGV V++ Sbjct: 239 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 288 Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335 GTA E +++ +L RIV FDGD G +AA A Sbjct: 289 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 348 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L + + DP G A L+V + PL D + Sbjct: 349 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 405 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451 + + I IKD+ L Y++ R+ E R Sbjct: 406 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 465 Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492 +N ++ P + +G + R E + TL+ Sbjct: 466 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 525 Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547 P + E ++ L + Q ++ + + + P + L + G Sbjct: 526 QIPRAVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 585 Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 ++ +L +Q + EA+ RQ Q A Sbjct: 586 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 644 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 + R+ + +Q ++ T + L + EV + ++SQ FG +G Sbjct: 645 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 693 >gi|331001842|ref|ZP_08325364.1| hypothetical protein HMPREF0491_00226 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412816|gb|EGG92199.1| hypothetical protein HMPREF0491_00226 [Lachnospiraceae oral taxon 107 str. F0167] Length = 579 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 145/632 (22%), Positives = 260/632 (41%), Gaps = 57/632 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y D I ++ I +++ Y+ ++ N Y CPFH EK+PSF + K Sbjct: 1 MYYSNDIIDEVRSRNDIVDVVSSYMKIQKKGAN-----YMGLCPFHAEKSPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD ++F+ SF E++ LA A + LP ++ K + ++ + Sbjct: 56 LFHCFGCGVGGDVITFIRQYENYSFNEALALLAKRANIELPQINDNDRAKSDEKNIILEI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ +L + + Y +RG+DS I F LG+A + L L+ G+S+ Sbjct: 116 NKTAARYFYENLFSKEGEAGLKYFKDRGLDSKDITHFGLGFAKKTPNDLYYFLKDSGYSD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + ++GL + DRF NR++FPI + +VI FGGR L KY+NSPET+ Sbjct: 176 DILKKSGL--INIDEKGVRDRFWNRVMFPIIDANSRVIGFGGRVL-GDGLPKYVNSPETL 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F K +NLY A + F ++ EGYMDV++L AG +N V+SLGT Sbjct: 233 AFDKSRNLYGLNFAKRTRR------------DFFLICEGYMDVIALHNAGFENSVASLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT ++LL + + +++L +D D G+ AA +AI L V + ++ +DPD Sbjct: 281 ALTALHVKLLGRYTKKVILTYDSDGAGINAAKRAIPL---LKEENINVKVLSMAPYKDPD 337 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ G F+K I + + + + N PDER + ++ ++ Sbjct: 338 EFIKNLGSEEFQKRIDNADNAFLWEIEVLKRDYNLNEPDERTSFYKEVARMLSLFSEKLE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y+ A+ RL + + +G + ++ K Sbjct: 398 RENYTHAVAKRLMIEYNALFDMVNSFGNTAGFIKKDVSKENK------------KTDDGY 445 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL ++ + + ++ + + + + +F Sbjct: 446 TKAQGLLLTWMVEETELFDRISEYISPENFTEGFYRDVATKIFEKLKTGDMTFSNICDDY 505 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +LL ++ L + I + +QA Sbjct: 506 TEDIEKQKLLSKILNTTLGTNLSDDEKKKAITESILKIRQA------------------- 546 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + K + K + E + ++ Sbjct: 547 ---SLDEKSKNAKGIEEFQKIIEEQAILRKLR 575 >gi|332307720|ref|YP_004435571.1| DNA primase [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175049|gb|AEE24303.1| DNA primase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 588 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 286/625 (45%), Gaps = 53/625 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DL+ I ++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 RIPREFIDDLIARTDIVEVVDNRVKLKKAGRN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 Y+CF C G+ +SFL F E+++ LA V +P ++++ + D Sbjct: 59 YHCFGCGAHGNVISFLMEYDRLEFPEAIEELAQYHSVDVPREKSSTPAPTAEQKQQKADD 118 Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E + +F H LK DK R YL +RG+ ++ F +GYAP ++ + Sbjct: 119 YELMETISRYFSHQLKVHSDKDRAIDYLKKRGLSGEVVKAFGIGYAPTEWDAVLSTFGRT 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++++++ L I +++ +D FR R++FPIR RG+++ FGGR L + KYLNS Sbjct: 179 PEAQQQLLDLKL-ITENDNRRRFDFFRERIMFPIRDKRGRIVGFGGRVL-GDGTPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG LY F+ A + R I++VEGYMDV++L Q ++ V+ Sbjct: 237 PETRIFHKGNELYGFYQAKQAHRNLPR----------IMIVEGYMDVVALAQFDIKYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T +++L++ + +V C+DGD G AA++A++ L +L G + F+ L G Sbjct: 287 SLGTATTPEHVQMLFRTTSEVVCCYDGDRAGREAAWRALENALAYLKDGVEMKFLFLPDG 346 Query: 357 EDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 EDPD+ +R GK AF +KL+ +S+PL + + + + +A L+ I I Sbjct: 347 EDPDTLVRQIGKEAFEQKLVSDSVPLSKFFFDNLLQRHHIGSAEGKAALKAEAMPLIEQI 406 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + R + + + + + + K A+ L ++L K K Sbjct: 407 LGENQRAILTSELSTHMGDRNRHRLEQDVAKANQHKAGAK----------LDFTALNKAK 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +S ++ L++ P I E Q A L L + LF + + Sbjct: 457 ISPV-----RMMIRLLLDQPRIAIECQQTNPAALGDMQVPGLDFL-TELFEFCLSKPNAN 510 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ + + L +L E + ++ + A + Sbjct: 511 TAQVLEHFRHHPQSKNLAKLLGW-----------EYAEENQALVFKDSFAKLLDWHF-KS 558 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI 618 + +E+ + + ++ L+ Sbjct: 559 RMDELMSKARLGNLSVDEKQELNLL 583 >gi|302877608|ref|YP_003846172.1| DNA primase [Gallionella capsiferriformans ES-2] gi|302580397|gb|ADL54408.1| DNA primase [Gallionella capsiferriformans ES-2] Length = 585 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 176/623 (28%), Positives = 283/623 (45%), Gaps = 52/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I ++I +YV + N Y ACCPFH+EK+PSF + SK FY Sbjct: 2 IPKSFIQDLLNRLDIVDVIERYVPLKKAGGN-----YVACCPFHNEKSPSFTVSQSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLI 121 +CF C V G + F+ LG F+E+++ LA G+ +P + K DL ++ Sbjct: 57 HCFGCGVHGTAVGFVMEHLGLGFVEAIEDLAQSVGMQVPYEQQASGESFKKVAPDLYEVM 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +VAT ++ LK R YL RG+ F +G+AP+ +L + Sbjct: 117 QVATRYYREQLK--LSTRAIDYLKNRGLSGEIAARFGIGFAPEGWQNLSAAF--PDYQSA 172 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++E GL+I + YDRFR+R++FPI + R QVI FGGR L KGE KYLNSPET L Sbjct: 173 TLVETGLVI-TGDGDKRYDRFRDRVMFPIVNVRSQVIGFGGRVLDKGEP-KYLNSPETPL 230 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+ LY + A ++ R +++VEGYMDV++L Q GV V++LGTA Sbjct: 231 FEKGRELYGLYQAQKAIRAHGR----------VLVVEGYMDVVALAQHGVDYAVATLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T Y ++ L +L+ +IV CFDGD G +AA++A++ L HL G ++F+ L DPDS Sbjct: 281 TTPYHIQKLLRLADQIVFCFDGDKAGRKAAWRALENALPHLQDGKLLSFLFLPAEHDPDS 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 FIR +G+ FE+ I E++PL L + T T + R +L K ++ I Sbjct: 341 FIREFGQAEFEQRIAEAMPLSGYLLRELTSELDLQTQEGRNQLLHRAKPLLSVIVSPVTS 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + + K ++ P Sbjct: 401 LLLRKEVAALSGVSQAELEALYE-----------------IKPIAHAPRPSLKKAARTPF 443 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + +L LI P + + + + + + + L + + Q Sbjct: 444 PVQRLMLQCLIAQPGLGVDMPADWHGE---GADAEAIVAVLSALREADYKISSPALMQMF 500 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L Q + ++ W + + G L +R Q + ++ + Sbjct: 501 EGTSYARALAQAEAEMLA---WGDSFDVAAE--FAGLVGKLEEGQRRD----QFQALQSK 551 Query: 602 IAQVTAKG-EAEKTAILISILHE 623 ++Q G ++ + +L Sbjct: 552 LSQGGLSGLSVDEREQYLRLLQR 574 >gi|119473195|ref|ZP_01614892.1| DNA primase [Alteromonadales bacterium TW-7] gi|119444559|gb|EAW25874.1| DNA primase [Alteromonadales bacterium TW-7] Length = 583 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 156/630 (24%), Positives = 274/630 (43%), Gaps = 58/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V + DY ACCPFH+EK+PSF + K F Sbjct: 4 KIPRSFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C G+ +SF+ F+++++ LA++ + +P E+ + Sbjct: 59 YHCFGCGANGNAISFVMEYDKLEFVDAIEELASMLNLDVPREQGGSSAPERTAAQKRSDY 118 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ F+ H LK+ + Y+ RG+ ++ F +GYAP L L + Sbjct: 119 DLMLHTARFYQHQLKHHANSAAVIDYVKGRGLSGETVKKFMIGYAPSEWDGLCLQLGRNK 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +E+++E L + +D FR+RL+FPIR RG+V+AFGGR + + KYLNSP Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVVAFGGRVMQADQGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG LY + A +K I++VEGYMDV++L + ++ V++ Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------EHILIVEGYMDVVALAEKEIEYAVAA 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T + L++ + +++ C+DGD G AA++A++ L +L G +NFV L GE Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS ++ GK AFE+ + E+ +++ + ++ +A+L I I Sbjct: 348 DPDSLVQKEGKEAFEQRLSEADDFTKVMFNKLSQEIDLTLDSGKAKLLSAALPLIEKIPS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +Y + I ++L +L + + + + K+ + + Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNRLKTPKQQHSIERKFKITPM------------ 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-LFSDFVEQKYFLPEE 536 + LI HP + + L +L + + + Sbjct: 452 -------RQAIGILIQHPNLAKSV-----------PYLPELAQMNIAGIGLLLRLQQQAL 493 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + E + D L + E N + ++ + + L+ + E Sbjct: 494 EKETITTAQILEFFRDTDDYEPLIKLATWQHEINEERLETVFKNTFK-FIEDQCLNYRLE 552 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + I T +++ ++ + Sbjct: 553 TLL--IKDKTQGLNSDERLECHLLMTALKA 580 >gi|116494986|ref|YP_806720.1| DNA primase [Lactobacillus casei ATCC 334] gi|227535008|ref|ZP_03965057.1| DNA primase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|116105136|gb|ABJ70278.1| DNA primase [Lactobacillus casei ATCC 334] gi|227187323|gb|EEI67390.1| DNA primase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 595 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 266/633 (42%), Gaps = 41/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + +L + I++ IGQYV + N + CPFH+E TPSF N+ K + Sbjct: 2 IPEATVDKVLKAVNIADYIGQYVQLRKTGQNL-----FGLCPFHEEHTPSFSVNEPKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ F+ +F E+V+++A AG+PL V + + +++ Sbjct: 57 HCFSCGRGGNVFKFVMDYDNATFPEAVKKVADFAGMPLDVQVGHAAPVDPEISKQQHILQ 116 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 D FHH L N + + YL +RG+ IE F+LGYAP+ R L L + + Sbjct: 117 DTADLFHHILMNTEKGQTALDYLHKRGLTDDTIEAFQLGYAPEERNLLVAFLNNRKVDYQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 +GL ++ +DRF +R++FP+ S GQVI F GR LSK ++ KYLNSPET Sbjct: 177 DQRASGLFVEDQEG-KLFDRFNDRVMFPLTDSHGQVIGFSGRILSKDKTQAKYLNSPETK 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF+K L+N A + IL EGYMDV++ QAGV+ ++S+GT Sbjct: 236 LFNKRDVLFNLHRAKADFGRDGGP----------ILFEGYMDVIAAYQAGVKTGIASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ ++ LS R+ +C+DGD+PG +A +A+ ++ H + + V+L G DPD Sbjct: 286 SLTTEQVDIISHLSKRLTVCYDGDEPGQKAIERAVAMLADHPR--LQTDVVVLPDGMDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR G AF+ + L + + N + I I + Sbjct: 344 EFIRARGAEAFQAQVKSVLTPTAFILQFLARGVDMNNDQAKLTYLNAALKTIGKISNPVA 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + D A + P + + Sbjct: 404 RAVYVKQLADTTGVPESALNQSLPAPQ-----QAVQQQSSAPVSYQTAPVNQPVRPIDRY 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + LL + + ++Q + Q L++ EQ R Sbjct: 459 TAAQRQLLYYVWHDDLVMQRLKN--TAFTFPVPHFQTLFTGWLDFLHEQPDGELAGFLDR 516 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + QV TEA I ++ Q A + + + I++ Sbjct: 517 V-DPDLSGVAASVAMQVLPEA-----TEATIDELIQTITSASTV--------ERLQAIKQ 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I + G+ +K L + + Q + Sbjct: 563 AITEAQRLGDKQKLGELTVQYVNLMKLLKQQQG 595 >gi|124267676|ref|YP_001021680.1| putative DNA primase protein [Methylibium petroleiphilum PM1] gi|124260451|gb|ABM95445.1| putative DNA primase protein [Methylibium petroleiphilum PM1] Length = 606 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 171/640 (26%), Positives = 279/640 (43%), Gaps = 46/640 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI +LL I +IG +V+ R D+ CPFH EKTPSF+ +K FY Sbjct: 2 IPQAFIDELLARADIVEVIGPHVELKRAGK-----DFKGLCPFHGEKTPSFYVIPAKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQTD 116 +CF C +G L FL+ +G F E+V+ LA G+ +P D E++E + Q Sbjct: 57 HCFGCGAQGHALRFLTEHVGLDFPEAVRDLAQRLGMTVPQEDSSPEERERARAAKERQAT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L ++ A + + L+ + R YL RG+ F +GYAP+ L + Sbjct: 117 LSEVLAKAGEHWRKQLRGS--PRAVNYLKGRGLTGEIAARFGMGYAPEGWRGLASVFPRY 174 Query: 177 GFSEEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++ D YDRFR+R++FPIRS +G+VI FGGR L GE KYLN Sbjct: 175 DDPLLAESGLVIVQGDEGPEQKRYDRFRDRIMFPIRSVQGEVIGFGGRVLDAGEP-KYLN 233 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KG+ LY A L+ + ++VEGYMDV++L Q G N V Sbjct: 234 SPETPVFVKGRELYGLHEARQALR----------ERGYALVVEGYMDVVALAQLGFPNAV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T + L + + RIV FDGD G RAA +A++ L H + F+ L Sbjct: 284 ATLGTACTAEHVHKLLRFTDRIVFSFDGDAAGRRAAGRALEAALPHASDTRSMKFLFLPA 343 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDSF+R +G AFE + +++PL L + E ++ + RA + + K + + Sbjct: 344 EHDPDSFVRAHGTAAFEACVEQAVPLSRQLLEVAREGCDLDSAEGRARMLANAKPLWSAL 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D LR + R L + G ++ A + + L ++ + Sbjct: 404 PDGALRRQLLGELA-RAGALESAELQALWGGQAPPRREAARPPPRPNRRALRAATSSLDR 462 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLP 534 + L+ + ++ + + + +L F E+ P Sbjct: 463 GA-----------WLLVQRCDLWDRLDVATHELLCEVLDPHGSFFRWLDRRFHEEGPLSP 511 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + + G G L +L +++ A E + + + + +A R L R Sbjct: 512 QTLLAEMQAGGEGPGLAELAQRI------GALHEVEVGEHAEAELRVVADRVRLDALERD 565 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ + E+ ++ + ++ Sbjct: 566 LESLTA--AEPLTADMLDTIRRTRQNADEIKRRLARGQTT 603 >gi|253566363|ref|ZP_04843817.1| DNA primase [Bacteroides sp. 3_2_5] gi|251945467|gb|EES85905.1| DNA primase [Bacteroides sp. 3_2_5] Length = 675 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 156/680 (22%), Positives = 289/680 (42%), Gaps = 70/680 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I ++ +V +R N Y CPFH+EKTPSF + SKG Sbjct: 10 IDQATIDRILDVAQIVEVVSDFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPSKGLC 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+KE + + + Sbjct: 65 KCFSCGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELTNEEKEVQSNRESMFIV 124 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG I+ F+LG++ + R +L + +KGF Sbjct: 125 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIDKFQLGFSTEGRDALAQEALRKGF 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + + DRF R++FP+ + G+V+AFGGR LS KY+NS Sbjct: 185 KQEFLVKTGLCYET-DDHKLRDRFWGRVMFPVHTLSGKVVAFGGRVLSTENKKLAKYVNS 243 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV+ Sbjct: 244 PESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVVA 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL G Sbjct: 294 SSGTSLTPGQIRLIHRFTNNITVLYDGDMAGIKASIRGIDM---LLEEGMNIKVCLLPDG 350 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + T F+ I E + + P +RAEL + I I Sbjct: 351 DDPDSFARKHNATEFQNFIQEHETDFIRFKAQLLMEDAGKDPMKRAELINDIVRSIAVIP 410 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS------ 470 + +R Y + L+ + ++E + + + Sbjct: 411 EAIVRDVYIKECGQLLRIEDKLLVSEVAKRRELQAEKGNKPIASNNAPTPQPGEMPPPFP 470 Query: 471 -------------LVKGKLSKKPSLREAALLLTLINHPA-----------------ILQE 500 +GK ++ E ++ ++ + +++ Sbjct: 471 PEEMEADTYQSFIPQEGKEGQEFYKYERLIIQMIVRYGEKVMCNLTDEEGNEVPVTVVEY 530 Query: 501 QYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +L ++ + N +++ S +Q++ + + +L Sbjct: 531 VINDLKEDELAFHNPLHRRILSEASEHIHDQEFASERFFVAH-PDPKISTIATELASDRY 589 Query: 559 DAGLWSATTEANIVDVRQGYQQA--LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + T+ + D + Y+ L + + +++ + + I + + + + Sbjct: 590 QLSKYHSKTQKLVTDEERLYEMVPMLMINFKNAIVAEELKHIMYALQDPSIANDNAQCDA 649 Query: 617 LISILHEVHIQIHQIESQEA 636 ++ E+ +I++ A Sbjct: 650 VMQRYKEMK----EIQNLMA 665 >gi|167842196|ref|ZP_02468880.1| DNA primase [Burkholderia thailandensis MSMB43] Length = 625 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 173/657 (26%), Positives = 276/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108 +CF C G + FL G +F E+VQ LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGHAPPA 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 + + T L +++ A D++ L+ YL RG+ F LGYAPD + Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174 Query: 169 LREHLRQKGFSEEK---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 L ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LESAFGDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRLQ F + R Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L L+ HP I E + +L+ + Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAAALDDESVATLRALPRIGELFDEVIGH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 L + + + E+ +++ D VRD + ++A ++R+ Sbjct: 509 AHALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEELRER 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + + K+ + E + L L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDVCCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623 >gi|121607097|ref|YP_994904.1| DNA primase [Verminephrobacter eiseniae EF01-2] gi|121551737|gb|ABM55886.1| DNA primase [Verminephrobacter eiseniae EF01-2] Length = 653 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 168/683 (24%), Positives = 283/683 (41%), Gaps = 89/683 (13%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P FI++LL I + +++G+YV + N CPFH+EK+PSF + +K Sbjct: 1 MSIPASFIQELLARIDLVDIVGRYVPLKKGGVNL-----MGLCPFHEEKSPSFSVSPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 FY+CF C GD +SFL A G F+E+VQ LA AG+ +P + KE+ Sbjct: 56 FYHCFGCGKSGDAISFLMAQAGLDFVEAVQDLARQAGLQVPDDNSSPADKERAAAARQKQ 115 Query: 116 -DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + L + Y RG+ E + LGYAPD SL Sbjct: 116 ATLSEVLEKAAAAYRQHLHDT--PHAIAYFKSRGVSGAIAERYGLGYAPDGWRSLASCFA 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + ++++ ++ YDRFRNR++FPIR+ +G+ I FGGR L + + KYL Sbjct: 174 -RYDDPLLAESGLVIVNAEDGGKRYDRFRNRVMFPIRNVKGECIGFGGRVLGQDKP-KYL 231 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG LY F A + + + ++ EGYMDV++L Q G N Sbjct: 232 NSPETPVFHKGHELYGLFEARSAIH----------EQGYALVTEGYMDVVALAQRGFPNT 281 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T ++ L + + +V FDGD G RAA KA+D L H + F+ L Sbjct: 282 VATLGTACTPEHVQKLLRFTASVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLP 341 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSFIR +G AF + + +++PL L + +E + + RA + + + Sbjct: 342 AEHDPDSFIRSHGPEAFARHVGDAVPLSRFLLETASEGCDLGSAEGRAHMASNARPLWTA 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKY----------------------------------- 439 + D L+ + Q + Sbjct: 402 LPDGVLKRQLLAELAQLTQLDARDLSDLWSPDHSRQSQRPANPGHPPALDDRHPPRDASN 461 Query: 440 --------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 + + + + + +++ Q L + + + LL + Sbjct: 462 GHGDSGGYAVQRPAWRKSADWQSGNGNRRAAPWPPSQPRLPRTPNASRADHAARLLLAHM 521 Query: 492 INHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 +LQE + L+++L + F E+ + + L E L Sbjct: 522 ----DLLQELTHDDHSTLCAQPAPHGPLFAWLEAQFHERGPVAWARLRESLREHECEALA 577 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++ A TE + ++ + L + + +Q++ + Q AQ + Sbjct: 578 LKVMTGA------HAQTEGELQELWLELRDLLN-RMQIEDIKQQQKLLILQAAQDPTALD 630 Query: 611 AEKTAILISILHEVHIQIHQIES 633 + + +++ Sbjct: 631 ---------RYRALEQKRTALQN 644 >gi|15827366|ref|NP_301629.1| DNA primase [Mycobacterium leprae TN] gi|221229843|ref|YP_002503259.1| DNA primase [Mycobacterium leprae Br4923] gi|18202773|sp|Q9CCG2|PRIM_MYCLE RecName: Full=DNA primase gi|13092915|emb|CAC30343.1| DNA primase [Mycobacterium leprae] gi|219932950|emb|CAR70928.1| DNA primase [Mycobacterium leprae Br4923] Length = 642 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 134/654 (20%), Positives = 247/654 (37%), Gaps = 44/654 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I + + I ++G YV R CPFH+EK+PSFH + G Sbjct: 4 RIPDRDIAAIRERVCIEEVVGDYVQLRRAGA----DSLKGLCPFHNEKSPSFHVRPNHGH 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD +F+ + SF+E+V+ LA G + + ++ LI Sbjct: 60 FHCFGCSEGGDVYAFIQKIEHVSFVEAVEMLADRIGHTINYFGTATSVQRDRGSRSRLIA 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ +L++ YL ER D++A F G+AP SL ++L KGF Sbjct: 120 ANAAAAAFYAAALESDEAAPARQYLMERNFDANAARHFGCGFAPSGWDSLTKYLISKGFE 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++ AGL DRF RL++PI + G+VI FG R L + + KY+N+P Sbjct: 180 FTELEAAGLSRQ--GRRGPMDRFHRRLLWPILTLAGEVIGFGARRLFDDDPMEAKYVNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 238 ETLLYKKSSVMFGIDLAKRDIVK----------GHQAVVVEGYTDVMAMHLAGVTTAVAS 287 Query: 298 LGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA + L +L + R L F D A + G V Sbjct: 288 CGTAFGDEHLAMLRRLIMDDNWYRGELIFVFDGDAAGQAAALKAFDGDQQVAGKSFVAV- 346 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL--EIHLKN 410 + G DP G A L+ P+ + + + D +A++ Sbjct: 347 AADGMDPCDLRLSSGDQALRDLVACRKPMFEFAIRSLIPDGMVLDDDPQAKVDALRRSVP 406 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + I+D LR Y++ + + + E + ++ R S + Sbjct: 407 LVARIRDYALRDEYARRLAGWTGWSDEGQVLARVREEANRRSVPERTRRRSVSVEQSPFM 466 Query: 467 MQSSLVKGKLSKKPSLR------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 +L+ +P R + L +++ +P + + L + + + + Sbjct: 467 QPPGAPADQLAARPDPRDPTLWPQREALKSVLQYPVLAGPVFDTLTVESFTHPGYGAVRA 526 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + ++ L+ L ++ + + Y Sbjct: 527 AIDAAGGASAGITGAQWIDVVRQQTTSALIAGLINELGVESIQVDDEKLP------RYID 580 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 581 GVLARLQEVWMGRQIAEVKSKLQRMSPIDQGDEYHELFGDLVAMEAYRRSLLEQ 634 >gi|314936317|ref|ZP_07843664.1| DNA primase [Staphylococcus hominis subsp. hominis C80] gi|313654936|gb|EFS18681.1| DNA primase [Staphylococcus hominis subsp. hominis C80] Length = 602 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 154/632 (24%), Positives = 274/632 (43%), Gaps = 35/632 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 +CF C G+ F+ + SF+E+VQ L + + +P + +I Sbjct: 56 ICHCFGCKKGGNVFQFIQDIKDISFVEAVQELGERVNIKVDIGHSNPSTTQIASEDLKMI 115 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ +++ ++L K+ + YL RG I+ +GYAP++ + + L+QKG Sbjct: 116 EMHELINEYYMYALMKSVEGEEALNYLVNRGFTEELIKSRGIGYAPNNAHFCHDFLKQKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + E EAGLL + + + YDRFR+R++FP+++++G+++ F GRT + KYLNSP Sbjct: 176 YDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGFSGRT-YNNQEPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K + LYN A ++K + ++L+EG+MDV+ AG++ VV+S Sbjct: 235 ETPIFQKRRLLYNLDSARKSIRK----------NDEVMLLEGFMDVIKADYAGLKTVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTAL+E + +L KL+ I L FDGD G A K + L G V V L + Sbjct: 285 MGTALSENHITVLKKLTSNITLMFDGDFAGQEATLKTGE---HLLKHGLNVFVVQLPKNM 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I +GK F + I + + + N + I+ +K Sbjct: 342 DPDEYIVKFGKEKFIEFINNEKKSFIIYKVQFYRDEIENNDLAYERHFKEITEDISFVKS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + D ++ + + + S Q+ + Sbjct: 402 SILKNKIVNDVADIFNIDANTMMSNVHQQPEFISYEEDYIGNTNDNSNSNSQNLNIVFTH 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K + ALL + + ++L + N Q ++ L + E Y+ + Sbjct: 462 LNKSEKAQRALLKHFMMDKDVFLNYNRQLEANDFTNKYFQSIFKALTDYYSENDYYSISD 521 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + ++ E + QLD + + + Y L K E Sbjct: 522 LILYIEDKDIREAIIQLDDYELNREPYDLE--------IEEYISTLNENKYEDS----IE 569 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E+ ++ + G+ E + ++ + + Q Sbjct: 570 ELNHKLKEALRIGDVESQKYYLQMIVDKNKQR 601 >gi|158335712|ref|YP_001516884.1| DNA primase [Acaryochloris marina MBIC11017] gi|158305953|gb|ABW27570.1| DNA primase [Acaryochloris marina MBIC11017] Length = 684 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 168/676 (24%), Positives = 294/676 (43%), Gaps = 68/676 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + I +++ ++V ++ N CCPFHDEKTPSF + K F Sbjct: 5 RLHPDTIEQVRQATDIVDVVSEHVSLRKQGRNL-----VGCCPFHDEKTPSFSVSPEKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C G+ + FL + SF E V LA + VP+ + EKK + L Sbjct: 60 YYCFGCGAGGNAIKFLMEIGQRSFSEVVLDLAQRSQVPIQTLAKDEEKKLARKLSLREQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ +A+ ++ H+L+ + + Y ++RG+ + I+ F+LGYAP +L + +++ Sbjct: 120 YEILAIASRYYEHALRQPQGQNALRYARNQRGLSNETIQTFQLGYAPGGWSTLHDVLVQE 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 KGFS E + +AGL++ + YDRFR+RL+ PI ++ +V+ FG RTL GE KYLN Sbjct: 180 KGFSPELVQQAGLIVPRKSGDGYYDRFRDRLMIPIHDAQSRVVGFGSRTL-TGEEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF+KGK L+ A + K+ R ++VEGY DV++L G+ N V Sbjct: 239 SPETELFNKGKLLFGLDKARQTIVKADRA----------VVVEGYFDVIALHSVGITNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA---IDLVLCHLIPGNRVNFVL 352 +S+GTAL+ Q+R L + + + + D ++ ++ + Sbjct: 289 ASMGTALSLDQMRQLLRYTESKQVILNFDADAAGGKAAERAISEVEDQAYRGEVQLRVLN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+D D +++ Y + L+ ES +D R ++R ++ + + Sbjct: 349 LPNGKDADEYLQEYTAEDYLDLLDESPLWLDWQIHRALQDRDLQQAEQFQAATEAIAAIL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + LR +Y+ L Q + + R + R + QR +L Sbjct: 409 GKLPNATLRTHYTHRCAGLLSQGDSRLALQLEEALRQQVRGQRWHGRSQKWQRPADYTLR 468 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSD----- 525 + EA +L ++ P Q+ + + DI + + + LW + + Sbjct: 469 EA--------AEAQILRIYLHRPQFRQDIHNAMKQRDIEFSFSHHRFLWRQILAIEDDQA 520 Query: 526 -------FVEQKYFLPEEIHQRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQ 576 +E F + Q LC E+ + L + L +I Sbjct: 521 KLEPLHPELEAPAFDLIAVVQDLCTEYSQEMQQVYHLIQLNEKTELDILRPNLSIRAAAA 580 Query: 577 GYQQALALYKRFRLLSRQ----KEEIEKQIAQVTAKG---------EAEKTAILISI--- 620 ++ +A KR R L + + +K++ Q E+E+ L+ Sbjct: 581 SLER-IACEKRCRHLLQMWESAMKSAKKELGQRQILNTYLQQMLMDESEQAQSLLEEDSY 639 Query: 621 -LHEVHIQIHQIESQE 635 L E+ +I ++ QE Sbjct: 640 CLQELD-EIKRLYYQE 654 >gi|289178367|gb|ADC85613.1| DNA primase [Bifidobacterium animalis subsp. lactis BB-12] Length = 697 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 154/718 (21%), Positives = 256/718 (35%), Gaps = 103/718 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDE+TPSF+ S G + Sbjct: 9 IKKEDIERVRNAADLYDIVSATVALKPSG----VGAYVGLCPFHDERTPSFNVRPSVGSW 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIR 119 +CF C GD F+ F E+V+ LA + L + + + L+ Sbjct: 65 HCFGCGRGGDVFRFVQEQENIDFREAVELLADKYHIELHYENAGGANDSHRGTKRARLLE 124 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF + L R F GYAP +L HL KGF+ Sbjct: 125 ANEEAQKFFVSQILTEEALPARKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFT 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++++AGL + YD FR R +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 185 QQEMLDAGLARQ--GARGIYDYFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTP 242 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+HK + LY A + K +++VEGY DV+++ AGV V++ Sbjct: 243 DTQLYHKNQVLYGIDLAKPQIVKK----------RQVVIVEGYTDVMAMHLAGVDTAVAT 292 Query: 298 LGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAI 335 GTA E +++ +L RIV FDGD G +AA A Sbjct: 293 CGTAFGEEHAKIVRRLISDDSLGGVQLTGPLRVEGEPLSSRIVFTFDGDAAGQKAALHAF 352 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L + + DP G A L+V + PL D + Sbjct: 353 GLDSSFQT---QTFVAVADNNLDPCDLRIERGDDALRALVVNARPLYDFVIDVAIGKFDT 409 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451 + + I IKD+ L Y++ R+ E R Sbjct: 410 QYGTGQMGAVKAVAPLIARIKDKSLLDLYTRKAARRIGIDLTILQREVQSARRAQHVPNE 469 Query: 452 -----------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTLI 492 +N ++ P + +G + R E + TL+ Sbjct: 470 DAYASRQRGYDRNYEREREQPPMNEARMREIERGNARSQHFHRIDDNVFITEMQFMATLV 529 Query: 493 NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEIHQRLCERG---FG 547 P + E ++ L + Q ++ + + + P + L + G Sbjct: 530 QIPRAVNAELFKALTVHCFSTPVFQTMFEAVEAAGGLPEPGTSPGQWLHALTKAGGPLLA 589 Query: 548 ELLKQLD-------------------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 ++ +L +Q + EA+ RQ Q A Sbjct: 590 PVITELAVMNLPLPQNMANGNAAQTGQQEPGSQSAQPMPEASAEQ-RQYANQLTASLIDT 648 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 + R+ + +Q ++ T + L + EV + ++SQ FG +G Sbjct: 649 GYM-RRIGILRQQASRATNTHDQ---IRLFGAITEVERERKDLQSQI-----FGSAAG 697 >gi|194397481|ref|YP_002037703.1| DNA primase [Streptococcus pneumoniae G54] gi|194357148|gb|ACF55596.1| DNA primase [Streptococcus pneumoniae G54] Length = 586 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K+ + I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKRSSGKASK----------IYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPXDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYTQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|167577171|ref|ZP_02370045.1| DNA primase [Burkholderia thailandensis TXDOH] Length = 625 Score = 343 bits (880), Expect = 4e-92, Method: Composition-based stats. Identities = 174/657 (26%), Positives = 279/657 (42%), Gaps = 66/657 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--------------KIE 108 +CF C G + FL G +F E+VQ LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGAGGGSGEGYAPPA 116 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY- 167 + + T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 ASKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQN 174 Query: 168 --SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + R + ++ D + +A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 LEAAFDDYRHDSLVDAGLVIVSEKTDANGAARRYDRFRERIMFPIRNVKGQVIGFGGRVL 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++ Sbjct: 235 DGGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVA 283 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 LAQLGFPNAVATLGTACTPVHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAADN 343 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPDS++R +G AF + + ++PL L T + + P+ RA+ Sbjct: 344 RTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEATAGKELDQPEGRAKAL 403 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 K + + LR DRLQ F + R Sbjct: 404 FDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA--------------- 448 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ + E L L+ HP I E A + +L+ + Sbjct: 449 APARQAPARSERRRVTDSEKRALRNLVMHPRIAALLDDESAATLRALPRIGELFDEVIGH 508 Query: 526 FVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQG 577 + L + + + E+ +++ D VRD + ++A +R+ Sbjct: 509 ALALGEGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQQNPESDAAQEGLRER 568 Query: 578 YQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + QA L R+ + + K+ + E + L L ++ ++ Sbjct: 569 ERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKDLHQNLADMKRRL 623 >gi|238853401|ref|ZP_04643780.1| DNA primase [Lactobacillus gasseri 202-4] gi|238833973|gb|EEQ26231.1| DNA primase [Lactobacillus gasseri 202-4] Length = 605 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 146/636 (22%), Positives = 268/636 (42%), Gaps = 46/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF ++ K F Sbjct: 4 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV++ A +A + +P + K + Sbjct: 59 FKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAAKPLSPLKKMY--- 115 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFS 179 AT+F+ H L + +R Y +R + ++ FK+GYAPD L + ++K ++ Sbjct: 116 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDKILLTYLQQKKEYT 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 + + E+GL I+ + +DRFR+RL+FP+ G + F GR +S +++ KY+NSPE Sbjct: 176 DNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L++F A + S +IL EGYMDV++ +AG+Q+ V+S+ Sbjct: 235 TKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L D Sbjct: 285 GTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +++ YGK + + +L D L +R + + E+ I + D Sbjct: 343 PDEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLTYITAAVQMIAGLNDP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------QRLMQSSL 471 Y + + + R ++ H+ S + Sbjct: 403 VAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIGETAEPKEA 462 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 G S+ + LL I+ + + KL F Sbjct: 463 QAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWLKYHQTHDE 520 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + E +L + + + + + + ++ + + Sbjct: 521 AEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----I 567 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ + K + + + + + Sbjct: 568 DEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 603 >gi|116629752|ref|YP_814924.1| DNA primase [Lactobacillus gasseri ATCC 33323] gi|311110606|ref|ZP_07712003.1| DNA primase [Lactobacillus gasseri MV-22] gi|116095334|gb|ABJ60486.1| DNA primase [Lactobacillus gasseri ATCC 33323] gi|311065760|gb|EFQ46100.1| DNA primase [Lactobacillus gasseri MV-22] Length = 606 Score = 343 bits (880), Expect = 5e-92, Method: Composition-based stats. Identities = 146/636 (22%), Positives = 268/636 (42%), Gaps = 46/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++I QYV +++ DY CPFH EKTPSF ++ K F Sbjct: 5 RIPEQFIDEVRNSVDIVDVISQYVSLEKKGK-----DYLGLCPFHQEKTPSFTVSEGKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ FL +F ESV++ A +A + +P + K + Sbjct: 60 FKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAAKPLSPLKKMY--- 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFS 179 AT+F+ H L + +R Y +R + ++ FK+GYAPD L + ++K ++ Sbjct: 117 RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDKILLTYLQQKKEYT 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 + + E+GL I+ + +DRFR+RL+FP+ G + F GR +S +++ KY+NSPE Sbjct: 177 DNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRISNDKTIAKYMNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L++F A + S +IL EGYMDV++ +AG+Q+ V+S+ Sbjct: 236 TKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIAAYKAGIQSGVASM 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G + ++L D Sbjct: 286 GTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQGFNLGIIVLPENLD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +++ YGK + + +L D L +R + + E+ I + D Sbjct: 344 PDEYVKKYGKEKYRAEVAGALSSTDFLLERLANQYNLHNDREKLTYITAAVQMIAGLNDP 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------QRLMQSSL 471 Y + + + R ++ H+ S + Sbjct: 404 VAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIGETAEPKEA 463 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 G S+ + LL I+ + + KL F Sbjct: 464 QAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWLKYHQTHDE 521 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + E +L + + + + + + ++ + + Sbjct: 522 AEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEKSK-----I 568 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q ++ Q+ + K + + + + + Sbjct: 569 DEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 604 >gi|307709166|ref|ZP_07645625.1| DNA primase [Streptococcus mitis SK564] gi|307620112|gb|EFN99229.1| DNA primase [Streptococcus mitis SK564] Length = 586 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 148/629 (23%), Positives = 261/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEMEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRD-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 FLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V + + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGEMPVQIISMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLVSFDYAQIEQIINESRQAQRQNRMEGISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D +D E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFSFDTPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEMSPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|256847130|ref|ZP_05552576.1| DNA primase [Lactobacillus coleohominis 101-4-CHN] gi|256715794|gb|EEU30769.1| DNA primase [Lactobacillus coleohominis 101-4-CHN] Length = 627 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 151/652 (23%), Positives = 277/652 (42%), Gaps = 47/652 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + + I ++I Q V ++ N CPFH + TPSF N+ K F Sbjct: 3 RIPNELIDQIRDSVNIVDVISQDVQLKKQGKNL-----MGHCPFHRDDTPSFAVNEQKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLI 118 +YCFSCH G+ FL L SF ++V+++A ++ + LP + + L Sbjct: 58 FYCFSCHRSGNVFGFLQQLHNLSFPDAVRQVAEMSNITLPTQYVSENHQSVDNSPKGQLT 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS--LREHLRQ 175 +L + A +HH L ++ +YL +RG+ I+ F LGYA + L E+ ++ Sbjct: 118 KLHDQAAKLYHHLLVNTEAGEKALHYLTKRGVSRKLIDQFDLGYAVEQSDEEVLLEYAQK 177 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVK 232 + + + ++GL + +DRF R+++PI++ G VIAF GR L+ K Sbjct: 178 QQIDYQLLRQSGLFTEDQQG-NLHDRFHGRIMYPIKNENGHVIAFSGRILAPKATQNEPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+NSPET +F+K + L+N A + S + L EG+MDV++ GV+ Sbjct: 237 YMNSPETPIFNKRRTLFNLDLAKKGAR----------QSGSLTLFEGFMDVIAAFGVGVK 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N ++S+GT LTE Q++++ +++ ++ +C+DGDDPG A +A+ + P V + Sbjct: 287 NGIASMGTNLTEEQIQIIQRITSQVNICYDGDDPGQNAINRAVQMFTD-NAPRLGVKIIQ 345 Query: 353 LSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L G DPD +++ YG F L + V+ K + DE Sbjct: 346 LPAGIDPDEYVQKYGGIKFSDYLSQNTENSVEFHLKYLQRGLNLKNQDELMGYLNAALQV 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I + + + Y Q + + + + R + Q P + + Sbjct: 406 IAGVSEPVAQDLYLQKLATKFGLDKTSLVNQLAKIQPPSRPAQSYQFSNRQSRPDRNEAR 465 Query: 469 SSLVKGKLSKKPSL-----REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 S +++ +P L E LL + + + + + + + Q+L+ + Sbjct: 466 RSQPSVQMTTQPLLSKLQSAEQRLLKYYVLDEGVRKRLHGQ-EGFSFADVAYQQLYQKIT 524 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 FV+ F + R+ ++L Q+ D + + Sbjct: 525 EYFVDHTEFSTAAMLDRIDNPEQQQILTQMAELSIDDNIS-----------DDAVNDCIR 573 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + L +Q + + + E T L + L ++ Q Q++++E Sbjct: 574 VIINEAPLDQQIAAKRAALDEAAMMNDQELTTKLATELVNLYQQQQQMKTEE 625 >gi|75909994|ref|YP_324290.1| DNA primase [Anabaena variabilis ATCC 29413] gi|75703719|gb|ABA23395.1| DNA primase [Anabaena variabilis ATCC 29413] Length = 640 Score = 343 bits (879), Expect = 5e-92, Method: Composition-based stats. Identities = 164/655 (25%), Positives = 286/655 (43%), Gaps = 45/655 (6%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I ++ I +++ +YV +R D+ CPFHDEK+PSF + Sbjct: 1 MQIPRLHPDTIDEVKHRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K YYCF C G+ + FL L SF + V LA VP+ P +++++ + Sbjct: 56 TKQMYYCFGCQAGGNSIKFLMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQISL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ A F+ H+L+ ++ +R Y +R I+ F LGYAP +L + Sbjct: 116 REQLYEVLASAASFYQHALRQSQGQRAMQYLRSDRQFKEATIQQFGLGYAPAGWETLHRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + +AGL+ A YD FR+RL+ PIR +G+VI FGGRTL E Sbjct: 176 LVEDKHYPVHLVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTL-TDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+KGK L+ A + + S ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFNKGKTLFALDQAKTGI----------SQSDQAVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTAL+ Q+RL+ + + ++VL FD D G AA +AI ++ ++ Sbjct: 285 NNAVASLGTALSLEQVRLILRYTDSKQLVLNFDADKAGTNAAERAIGEIADLAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + G+D D ++R + + +L+ + ++ ++ ++R + ++ Sbjct: 345 KILNIPDGKDADEYLRSHTPADYGQLLANAPLWLNWQIQQIIKDRDLKQAPDFQQVTQQF 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + +I + R YY + L + I K S R + Sbjct: 405 VKLLKNIVNSDTRNYYVSYCAEILSLGDTRLIPLRVENLLTQITPTTAAYSKPLSTRTNR 464 Query: 469 SSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLW 519 S + + L EA LL ++ P + +EL + + + + LW Sbjct: 465 SLSLVPSPNSPLKGDRSLLELAEALLLRIYLHCPEQRRVIIEELEARSLEFSLSHHRFLW 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + EQ ++ RL + L + + + ++ I+ Q Q Sbjct: 525 QQILECTGEQV-----DLVSRLQDIYLE--LAEELGVISHLFHLNEKSKKEIMRTPQVVQ 577 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A+A +R ++ + + E EK + I++ +++ Q Sbjct: 578 AAIACMERVLT-EKRYRHFLELWQETDPDTEPEKWQSYYQAFYTEKIKLQELDRQ 631 >gi|315127801|ref|YP_004069804.1| DNA primase [Pseudoalteromonas sp. SM9913] gi|315016315|gb|ADT69653.1| DNA primase [Pseudoalteromonas sp. SM9913] Length = 583 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 160/629 (25%), Positives = 281/629 (44%), Gaps = 56/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DLL I +LI V + DY ACCPFH+EK+PSF + K F Sbjct: 4 KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C G+ +SF+ F+++++ LA++ + +P E+ + Sbjct: 59 YHCFGCGANGNAISFVMEYDKLEFVDAIEELASLLNLDVPREQGSSNGPERTAAQKRSDY 118 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ A F+ H LK ++ + + Y+ RG+ ++ F +GYAP L + L + Sbjct: 119 DLMLHAARFYQHQLKHHSNSEAVIDYVKGRGLSGATVKKFMIGYAPSEWEGLCQQLGRNQ 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +E+++E L + +D FR+RL+FPIR RG+VIAFGGR + + KYLNSP Sbjct: 179 EQKEQLVELKLASEKTPG-KQFDFFRDRLMFPIRDKRGRVIAFGGRVMQADQGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG LY + A +K +++VEGYMDV++L + G++ V++ Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVLIVEGYMDVVALAEQGIEYAVAA 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T + L++ + +++ C+DGD G AA++A++ L +L G ++FV L GE Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGKDAAWRALENALPYLNDGKALHFVFLPDGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS ++ GK AFE+ + + +L+ + ++ +A+L I I Sbjct: 348 DPDSLVQQEGKVAFEQRLENADDFTKVLFNKLSKEIDLTLDSGKAKLLSAALPLIEKIPS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +Y + I ++L +L + + + + + K+ + + Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNHLKTPKQQQAIERKFKITPM------------ 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LI HP + + L D+ N L L +++ +I Sbjct: 452 -------RQAIGILIQHPNLAKSVP-YLPDLAQMNIAGIGLLLRLQHQALQKDGITTAQI 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E L +L + + Q + + L+ + E Sbjct: 504 LESFRGTDDYEPLTKLATWQHQIN----------EERLETVFQNTFKFIEDQCLNYRLET 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626 + I T +++ ++ + Sbjct: 554 LL--IKDKTQGLNSDERLECHLLMTALKA 580 >gi|223936512|ref|ZP_03628423.1| DNA primase [bacterium Ellin514] gi|223894676|gb|EEF61126.1| DNA primase [bacterium Ellin514] Length = 605 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 159/630 (25%), Positives = 275/630 (43%), Gaps = 46/630 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + + I ++IG Y+ R N + A CPFH EK+PSF+ N K + Sbjct: 5 FSQATREQVRSASDIVDVIGSYLPLKRAGAN-----FVALCPFHKEKSPSFNVNPHKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121 +CF CH GD +F+ F ++V+RLA A +PL + + +++ + + L+++ Sbjct: 60 HCFGCHKGGDVFTFVKEYENIPFPDAVKRLAERAKIPLEMDNNPAQQQSRHLKDVLLQIH 119 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E T + +L A + YL +RG+ AI++F+LGYAPD R KGF Sbjct: 120 EQITQRWQSALANEAAGQIARDYLVQRGVTEEAIKLFRLGYAPDVWEDTVNWSRSKGFDP 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + ++GL++ + S YDRFR RLIFPI +G+VI F GR LS + KY+NSPET Sbjct: 180 VVMEQSGLILRKEGSDHYYDRFRGRLIFPICDEQGRVIGFSGRVLSGDQKTAKYVNSPET 239 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGK + + L + I+ EG +D+++ AGVQN+V+ G Sbjct: 240 PIFTKGKVFFGLDKSKRAL----------LEAQSAIVCEGQLDLIACYMAGVQNMVAPQG 289 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT R+L + + +VLCFD D+ G AA +++D L G + ++ DP Sbjct: 290 TALTADHARILKRYAEEVVLCFDSDNAGQNAAVRSLD---SLLASGLAIRVAVVPAPHDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DSFI+ YG AF++L+ ++ D R E + R + + + + Sbjct: 347 DSFIKEYGGEAFKELVKKASGFFDYYLNRLCETNDVASDKGRLIILQEMAEAVYKTGNVV 406 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L Y+Q RL + E R K + ++ ++ Sbjct: 407 LIDTYAQKTAFRLGVPPEAVRAEFRKASR----------SKNATPLEVEEAIEIKPSKVP 456 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E L + + + L + ++++ + + Sbjct: 457 LNTPEHWFLKLIFLQEEGMDWIHAHLDPNWIQHLTVRQIAVMRLAVHAQG---------- 506 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 +G L + + + + A++E + + L R + + RQ + Sbjct: 507 --TWQGVATFLNDCESEEMRSLITEASSEERPIPNPTQQMNDIVLRLRNQFIERQMAVLA 564 Query: 600 KQIAQVTAKGEAEKTAIL--ISILHEVHIQ 627 ++ + G+ E+ AIL L ++ Q Sbjct: 565 QESGK-PGLGDEERLAILVQQQKLRQLKRQ 593 >gi|298345357|ref|YP_003718044.1| putative DNA primase [Mobiluncus curtisii ATCC 43063] gi|304390912|ref|ZP_07372864.1| DNA primase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235418|gb|ADI66550.1| possible DNA primase [Mobiluncus curtisii ATCC 43063] gi|304325795|gb|EFL93041.1| DNA primase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 692 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 146/708 (20%), Positives = 260/708 (36%), Gaps = 101/708 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + ++ + IPI +++ YV R+ + CPFHDEKT SF + Sbjct: 4 KFDPEDLQKVRD-IPIESVVSDYVSLQRKGS-----SLLGLCPFHDEKTASFSVTPVRNM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F E+V+ LAA AG+ + V+ KE+ + L Sbjct: 58 WHCFGCSQGGDTIDFVQLIEGLTFPEAVEFLAARAGITMHYVEGAAITKERVEPGTRQRL 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + +R +++ R S F +GYAP +L ++LR KG Sbjct: 118 LECNRVAQDFFVSQLVSPEAQRARDFVEGRAFTSQDAAHFGMGYAPPGWNNLTDYLRSKG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 F++++I+ GL YD FR+R+++PI+ G V+ FGGR L + KY+N Sbjct: 178 FTDQEIVTVGLGK--PGQRGIYDVFRDRVMWPIKDVTGAVLGFGGRRLDDSDPQVPKYIN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + K R ++VEGY DV++ +G+ V Sbjct: 236 TPESPIYHKSSVLYGLDLARPNIGKERR----------CVIVEGYTDVMAAHLSGITTAV 285 Query: 296 SSLGTALTEYQLRLLWKLSP--------------------RIVLCFDGDDPGLRAAYKAI 335 ++ GTA T+ + + + ++ FDGD G AA KA Sbjct: 286 ATCGTAFTDEHAKQIRRFIGTSADSASSLKLPGGLPPRGGEVIFTFDGDAAGQAAALKAF 345 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + G DP G A LI PL D + K Sbjct: 346 RTDQDFASQ---AFVAVADDGLDPCDLRMQRGPGAVRDLIEGRKPLFDFVLKTIISKYDL 402 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------ 449 ++P R E + I+D+ LR Y + + L + + R Sbjct: 403 DSPAARIEAMRATAPVLAEIRDKALRTEYVKQVSGWLGVNVRDTWYTVNEVWRRIRSQQR 462 Query: 450 --------------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 N D G Q + Q+ L + Sbjct: 463 ASSASSSQPGGLGGPGNAAGGSEKSANLGNLTGSDASGSPQVIPQTRLDPAVNTDPVWRV 522 Query: 484 EAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQ------------- 529 E +L+ + P + + L + L+ ++ + + Sbjct: 523 ERDVLIAALQFPGFAAQTAFDTLDPQSFTQPTLRAIFEVIAAVGGAGEYRRLAEVAQAAG 582 Query: 530 ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALA 583 + + L+ L V ++ + + Q Sbjct: 583 EPHPGNVALNRWAAAVKAQAGSVLVGALTNLVTRPAPLYEANQSAEETRIAAESWVQNAV 642 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + L+ Q ++ Q+ ++ + + + A + L + ++ ++ Sbjct: 643 ESMERKGLNAQIASLKAQLRRLDS--NSPEKAEVFGKLINLENRMREL 688 >gi|262282857|ref|ZP_06060624.1| DNA primase [Streptococcus sp. 2_1_36FAA] gi|262261109|gb|EEY79808.1| DNA primase [Streptococcus sp. 2_1_36FAA] Length = 601 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 144/635 (22%), Positives = 259/635 (40%), Gaps = 51/635 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I D+ + I +IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISDIKNSVNIVEVIGEVVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+E+VQ +A +G+ L D K++ L + Sbjct: 65 HCFGCGKSGDVFKFIEEYRGVSFMEAVQIIAERSGIQLAVDKNDLSQPKRQHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L ++ YL +RG+ I+ F++G AP L + + K Sbjct: 125 HTEAAKFYHAVLMTTKMGEKARSYLYKRGLTDEIIKHFQIGLAPSEGNYLYQSMVGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYL 234 + S YD F+NR++FP+ + GQV+AF GR + KY Sbjct: 185 ATIMNSGLFN--LAESNLVYDAFQNRIMFPLANDNGQVVAFSGRIWKESPQTDGHQAKYK 242 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N Sbjct: 243 NSRSTAIFNKSYELYHLDKAKPTIKK----------SHEVYLMEGFMDVIAAYRAGIENA 292 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT ++ L K +++L +DGD G A KA+D + V V + Sbjct: 293 VASMGTALTHEHVQHLSKYCKKVILSYDGDKAGQAATVKALDEL-----KDLAVEIVSIP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + L+ ++ R + + + E + I Sbjct: 348 DQMDPDEFVQKNSPEELQHLLTKTRISDVEFLIRYLKPENTENLQAQIEFVEKMAPIIAQ 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + + R + ++ Q Q++L Sbjct: 408 TSSITAQNSYIYMLAELLPDFDYQQVEQAVNNSRLSNRKSQQEQVY--QQPHFQTNLPLS 465 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E LL +I +P +L + + D ++ ELQ L+ L Sbjct: 466 KQVSRLVKAENHLLNRMIEYPIVLNDY-RLREDFQFATPELQILYQILCE---------- 514 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + + E + + +E ++ + + + LL ++ Sbjct: 515 ---NGEVTSQDLSEQSDGVQQAWYRILEEDLPSEIADNELAE-----VESIRDKELLRKE 566 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K++ + + G+ + + L ++ Sbjct: 567 NQIIGKKVREASHNGDVDTAIEELERLIAQKRRME 601 >gi|85711762|ref|ZP_01042818.1| DNA primase [Idiomarina baltica OS145] gi|85694377|gb|EAQ32319.1| DNA primase [Idiomarina baltica OS145] Length = 581 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 176/628 (28%), Positives = 295/628 (46%), Gaps = 62/628 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I ++ V + N ACCPFH+EKTPSF + K FY Sbjct: 5 IPKSFIHDLLERADIVEVVDSRVPLKKAGKNHQ-----ACCPFHNEKTPSFTVSADKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDLI 118 +CF C G+ + F+ G +F ++V+ LA+ GV +P + +K+ Q + Sbjct: 60 HCFGCGAHGNAIDFIMEFDGLNFPDAVEELASSLGVQVPREEGHDPQKQHQQQAQLKNDT 119 Query: 119 RLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ T FF H LK+ +++ YL +RG+ ++ F++GYAPD+ SL + + Sbjct: 120 ELMAQCTRFFQHQLKHHANSEKVITYLKQRGLSGDIVKRFQIGYAPDAWDSLLTTMGVEP 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + +++I+ L+ D +D FR+R++FPI RG+V+ FGGR + + KYLNSP Sbjct: 180 RARQQLIDLKLVNVNDQGRK-FDFFRDRVMFPIHDRRGRVVGFGGRVI-DSDGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LFHKG+ LY F+ L++ I +VEGYMDV++L QAG+ V+S Sbjct: 238 ETRLFHKGQELYGFWNMQQRLRRP----------EQICIVEGYMDVVALAQAGIDYAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T QL+ L++ S R+V C+DGD G AA++A++ L L G ++F+ L GE Sbjct: 288 LGTATTTEQLQRLFRTSNRVVCCYDGDRAGRDAAWRALENALPLLKDGIDLSFLFLPEGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS ++ GK FE+ + ++ VD ++ +E+ NT R+ L K I I Sbjct: 348 DPDSVVQSSGKEGFERYLNQAKSFVDYFFEHLSEDVDVNTESGRSALLSEAKPRIERIAS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Q + L++ + R P QR + VK Sbjct: 408 DFYRESLMQKLAQLLRRETSQL----------------ERYVDTPQQRKAKPDAVKMTPL 451 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + ++ +P + +E EL +++ L+ L E + Sbjct: 452 -------RRAVALIVQYPQLAKEVPVKAELGELKLPG---MDLFIALHQQCNE-RDMTTA 500 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + + + + L++L + + + +Y + + ++ Sbjct: 501 QVLEYWRDTPYQKALEKLAVWQHGLD----------EHNMEQEFKDIFVYLIDQYVEQRA 550 Query: 596 EEIEKQIAQVT-AKGEAEKTAILISILH 622 +E+ K+ Q K E ++ +L+ L Sbjct: 551 DELLKKGQQTPLNKAEKQEYLMLVKHLR 578 >gi|152978400|ref|YP_001344029.1| DNA primase [Actinobacillus succinogenes 130Z] gi|150840123|gb|ABR74094.1| DNA primase [Actinobacillus succinogenes 130Z] Length = 587 Score = 343 bits (879), Expect = 6e-92, Method: Composition-based stats. Identities = 171/617 (27%), Positives = 291/617 (47%), Gaps = 52/617 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PRDFI D++ I +++G V + TN +Y ACCPFH EKTPSF + +K FY Sbjct: 5 IPRDFINDIVAQADIVDVVGSRVKLKKAGTN----NYQACCPFHHEKTPSFTVSKNKQFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQTD 116 +CF C G+ L+FL F+E+V+ LA + G+ +P K K + D Sbjct: 61 HCFGCGAHGNALNFLMEYDKLEFVEAVEELAGMLGLDVPREQYAERKNSKTSVSFKTKRD 120 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L++ + + + L + + YL +RG+ ++ F +GY PDS + + K Sbjct: 121 LYELMQNIAEQYQNQLTASIPAQA--YLQQRGLSEDVVKKFGIGYVPDSFDFVLRNFG-K 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 E++ + A ++ + YD FR+R++FPIR RG+VIAFGGR + + KYLNS Sbjct: 178 TKEEQERLFALGMLKRNERGALYDAFRHRIMFPIRDRRGRVIAFGGRVM-GDGTPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+ +HKG+ LY + AL S +++VEGYMDV +L Q GV V+ Sbjct: 237 PETVTYHKGRELYGLYEALQA----------NESPEMLVVVEGYMDVAALAQFGVDYAVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q++L+++ + +++ C+DGD G AA++A++ L +L G ++ F+ L Sbjct: 287 SLGTATTPEQIQLVFRATEQVICCYDGDRAGRAAAWRALENALPYLEDGRQLKFIFLPEK 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD++IR YGK FE I ++ L D L+ + +T + +++L IN + Sbjct: 347 EDPDTYIRQYGKAGFESYIQKAQTLHDFLFDHLLQQVDLSTKEGKSKLAALAVPLINRVA 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 LR Y + +L L I + G +K+A + + + Sbjct: 407 GDMLRVYLQNTLALKLGILDPVQIEKLFAKGGQPEKSAVQKIPEMKRTPM---------- 456 Query: 477 SKKPSLREAALLLTLINHPAI--LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 L+ L+ +P + L +++ + L L + E Sbjct: 457 --------RVLIALLLQNPELAQLPYTLDAFKELK-TDVNGLDLLENLTALCRENVGITM 507 Query: 535 EEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKR 587 +I + + + L+ L D + + + Q + +A ++ Sbjct: 508 GQILEYFRGTNYAKPLEILSVWDHLIESDNITVTFIDTLAFFANQLQSQRIEDLIAKDRQ 567 Query: 588 FRLLSRQKEEIEKQIAQ 604 L +K+E+ + +++ Sbjct: 568 LGLDLDEKQELAQLLSR 584 >gi|315924366|ref|ZP_07920588.1| DNA primase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622245|gb|EFV02204.1| DNA primase [Pseudoramibacter alactolyticus ATCC 23263] Length = 592 Score = 343 bits (879), Expect = 7e-92, Method: Composition-based stats. Identities = 165/635 (25%), Positives = 286/635 (45%), Gaps = 49/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y + I+ ++ I +++ QYV + Y CCPFH+E+TPSF + K Sbjct: 3 KYSEEIIQRVIEANDIIDVVSQYVQLKKSG-----HSYMGCCPFHNERTPSFSVSQDKQL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C V G+ +SF+ SF E++Q LA A + LP + + K + + L L Sbjct: 58 YHCFGCGVGGNVISFVMDKENMSFPEAIQYLAERANIHLPKSTSEDDAKYQRKETLYELN 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 V + ++ LK+ D YL ERGID I+ F LGYA D ++L + F + Sbjct: 118 RVLANHYYTLLKHQPDA--LAYLKERGIDIRTIKTFGLGYAADQWREACQYLTARQFKID 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 I+++G+ I D YDRFRNRL+ PI+++R ++I FGGR LS E KYLNSPE++ Sbjct: 176 DIVDSGVEIKNDRG-RFYDRFRNRLMIPIQNARDKIIGFGGRILSNEEHGPKYLNSPESL 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG L+N A + + +++VEGYMDV++L Q G++N V++LGT Sbjct: 235 IFSKGTELFNLNRAKKNI-----------VDNQLVVVEGYMDVIALYQRGIKNTVAALGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T + +LL + IVLCFDGD G A KAI + ++ V L+ +DPD Sbjct: 284 AFTSHHAKLLSRYVDEIVLCFDGDQAGENATNKAIAI---LKNSPLKIKVVRLNAEDDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S+IR G AF + + E+ ++ ++ T D+R I + Sbjct: 341 SYIRRNGVDAFRQQVREAQTAIEYQLTCLKKDNPLKTNDDRLTYVSQAVPIIREARSDIE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++S+ + + Y + +K +++ K K K Sbjct: 401 KNFFSKLVAQSTGISAKMIYNAAIKNIGYSEDQIMPAFKKYLAEQ-------KKKTPKAV 453 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +++ L+N + +L + + + ++ + + + E+K + Sbjct: 454 LQAEKNIIIGLLN--QTIPFNALDLTESHFSDAMFRQAFHEIKKCYQERKPMTGATVIAA 511 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + + L L + + EA+ + + +Q ++K Sbjct: 512 LDQPEAQQALTALIMESSNG-------EASPKESIRVLKQYKDA--------AAMRALQK 556 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 ++ + + A ++ L E+ + ++ E Sbjct: 557 KLKTLDPS--DPEVARTLNALMELKKRKDSMQEVE 589 >gi|86606956|ref|YP_475719.1| DNA primase [Synechococcus sp. JA-3-3Ab] gi|86555498|gb|ABD00456.1| DNA primase [Synechococcus sp. JA-3-3Ab] Length = 631 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 159/653 (24%), Positives = 284/653 (43%), Gaps = 45/653 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P +FI+ + I ++ + V ++ N + CPFH++ PSF + SK Sbjct: 3 SLPPEFIQLVRQKADIVEVVAEKVVLRKQGKN-----FVGLCPFHNDHKPSFQVSPSKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y CF+C GD + F+S + G SF E+V+ LA VP P E++ + L+ Sbjct: 58 YKCFACGAGGDVIRFVSQIEGLSFAEAVRHLARRYHVPEPKESLSQDYERQLSHREKLLE 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGF 178 ++ +A DF+ H+L++ YL R + ++ F++G+AP +SL E+ + QK Sbjct: 118 ILALAADFYRHALRSQIGSAARQYLHSRHLSEETLQKFQIGFAPPGWHSLYEYLVNQKRQ 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + EAGLL + YDRFRNR++ PI +G+VI F GR L E KYLNSPE Sbjct: 178 PVKLLEEAGLLAPRQQGSGHYDRFRNRIMLPIFDLQGRVIGFAGRAL-GEEQPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF+KG+ +Y A + K + +++VEGY DV++L QAG+ V+++ Sbjct: 237 TELFNKGQVVYGLNFAREAIAK----------ADQVLVVEGYFDVIALHQAGIAYAVAAM 286 Query: 299 GTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLLSR 355 GTALT +Q++ L + + R++L FD D GL AA +AI+ + G + + L Sbjct: 287 GTALTPHQVKTLLRYTQSKRLILNFDADRAGLNAAKRAIEAIEEQARRGEIELRILTLPA 346 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+D D F+R + +AFE L+ ++ +D + R + + L + + Sbjct: 347 GKDADEFLRQHSVSAFEALLAQAPLWLDWQIDQVLAGRDLAQGADFQQAYQALVQLLAGL 406 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + R Y+ + + L + + + R + R + + Sbjct: 407 G-GQWRSLYTHKVAELLSRGNARLCRDLEEDLRRAVRQYRWSKPR----------QLAAP 455 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K E+ LL ++ +E Q L ++++ ++LW + Q Sbjct: 456 KGCKLLQSESHLLQIFLHFAEYRREIRQTLMERELQFSFRPHRELWQRILELLSAQPELE 515 Query: 534 P--EEIHQRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E + L + E L L + + + + + K Sbjct: 516 DQGEGLLTALRTLCAQDEDLNERLSHLLWLDENTRVALMRPRLVVRAALANMELEIR-QK 574 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R+R ++ ++ + A + + Q+ + E ++E Sbjct: 575 RYRYWTQLWDQAFSEGNTALAAQYQASIQQEYQAIQALQRQVQ--LNLEDLLE 625 >gi|91776675|ref|YP_546431.1| DNA primase [Methylobacillus flagellatus KT] gi|91710662|gb|ABE50590.1| DNA primase [Methylobacillus flagellatus KT] Length = 576 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 172/608 (28%), Positives = 280/608 (46%), Gaps = 43/608 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + I ++I + V + N Y ACCPFH+EK+PSF + +K FY Sbjct: 2 IPDSFIQELLNRVDIVDVIDRSVPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLI 121 +CF C G + F+ G SF+E+V LA G+ +P P+ + K+ L ++ Sbjct: 57 HCFGCGAHGSAIGFVMEYQGISFVEAVHELAKSVGMIVPQESRPEDVVRAKVIPGLQEVM 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A D++ LK + R YL RG+ F++GYAP +L+ Sbjct: 117 QQAADYYRAELKKS--PRAIEYLKGRGLSGQVAGRFQIGYAPAGWQNLQAVFAD---YRH 171 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240 ++++ L+ + YDRFR+R++FPI +GQVI FGGR L KYLNSPET Sbjct: 172 EVLQTAGLVIENEQGRCYDRFRDRIMFPIHGQKGQVIGFGGRVLESADAGAKYLNSPETP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LY F A ++++ R ++VEGYMDV++L Q G+ V++LGT Sbjct: 232 LFQKGQELYGLFLARRAIREAGRA----------LVVEGYMDVVALAQYGIDYAVAALGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T + L + + IV CFDGD G AA++A L L G R++F+ L DPD Sbjct: 282 ATTPAHIAKLMRQTDEIVFCFDGDSAGRGAAWRAAMNALPVLKDGLRLSFLFLPAQHDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S++R +GK AFE L+ +++PL L + + N + +++ + + + I+ +L Sbjct: 342 SYVREFGKQAFEDLMAQAMPLSQYLIQELSANNRLQSQEDKVQFLNEAEPILKQIQAPRL 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + I + + R K P Q+ + Sbjct: 402 ALLLRKRIAELADISSDEMR----------------RMVKLPETNRQQTRSAPKQARVTM 445 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 SL+ L+ ++ P ++QE Q+ + +E + + + +E P I Sbjct: 446 SLQRRFTLMAIMR-PHLVQEGDQQW--MTGSTDEDEMVRQ-VVKLALESPDAKPVAILHG 501 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L LL L R + S E VR+ + ++ + R KE+ Sbjct: 502 LESVVNARLLPDLQRDL-HLLDESLDFELEFDGVRRQLKDMYLQRQKASAVDRLKEKNLS 560 Query: 601 QIAQVTAK 608 Q+ + + Sbjct: 561 QLTEEERE 568 >gi|254431428|ref|ZP_05045131.1| DNA primase [Cyanobium sp. PCC 7001] gi|197625881|gb|EDY38440.1| DNA primase [Cyanobium sp. PCC 7001] Length = 706 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 166/657 (25%), Positives = 287/657 (43%), Gaps = 46/657 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ +PS + +K F Sbjct: 7 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDTSPSMTVSPAKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL L SF + V LA +P+ +D +++ + + L Sbjct: 62 YYCFSCGAGGNAIKFLMELQRQSFSDVVLELARKYQLPIETLDGPQQERLRRQLSRRDQL 121 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM-FKLGYAPDSRYSLREHLRQ- 175 R++ +A+ +F L+ YL E+ F+LG+APD L HL Q Sbjct: 122 HRVLSLASGWFRSQLRAPEGAGALAYLREQRKLGEGTIEAFELGFAPDRWDGLLNHLGQV 181 Query: 176 KGFSEEKIIEAGLLIDGDNS-----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 +G E ++EAGL + YDRFR R++ PI+ +G+VI FGGR+L GE Sbjct: 182 EGIGPEWLVEAGLAVPRKGQGGEGSQGYYDRFRGRVMVPIKDRQGRVIGFGGRSLDGGEP 241 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET +F KGK+L+ A + +++ R ++VEGY DV++L AG Sbjct: 242 -KYLNSPETEVFEKGKHLFGLDRAASAIRRDDRA----------VVVEGYFDVIALHAAG 290 Query: 291 VQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNR 347 + N V+SLGTAL+ Q+ L + R++L FD D G+RAA +AI ++ L Sbjct: 291 ITNAVASLGTALSSQQITQLCRCCESRRLILNFDSDGAGVRAAQRAIGEVEQQALQGQLE 350 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + + L G+DPD F++ +G + L+ ++ +D ++ + D+ + Sbjct: 351 LRVLHLPAGKDPDEFLQQHGAGDYRALLDQAPQWLDWQIEQVLAGKDLARSDQFQQAVSG 410 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 L + + +R +Y Q + +RL + + R K R + ++ Sbjct: 411 LVALLGKLPQSAVRSHYLQQVAERLSGGQARLAIQLEDDLRQQVKGQRWHGRSQKWEQPG 470 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFS 524 ++ L EA +L ++ EL + ++LW+ + + Sbjct: 471 EAGLR--------ERAEAEVLRLYLHCGTYRAPIRAELRRHDLEDFALAHHRQLWAAISA 522 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQAL 582 + E R + G L R + D L +T + + Q L Sbjct: 523 LEEDNLGAGRLEAVNRGLDPGHDLADLDLPRLLSDQLLVEESTLLTRLTPLIEPSELQQL 582 Query: 583 ALYKRFRLLSRQKEEIEKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 L + L +E+Q + + +A + L L ++ + E QEA Sbjct: 583 HLGQPLLQLRGALASLERQRSLKRCRHLLDAWSSQRL-ETLERCIARLLEGERQEAA 638 >gi|228476140|ref|ZP_04060848.1| DNA primase [Staphylococcus hominis SK119] gi|228269963|gb|EEK11443.1| DNA primase [Staphylococcus hominis SK119] Length = 602 Score = 343 bits (878), Expect = 7e-92, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 272/632 (43%), Gaps = 35/632 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 +CF C G+ F+ + SF+E+VQ L + + + + +I Sbjct: 56 ICHCFGCKKGGNVFQFIQDIKDISFVEAVQELGERVNIKVDIGHSNHSTTQIASEDLKMI 115 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ +++ ++L K+ + YL RG I+ +GYAP++ + + L+QKG Sbjct: 116 EMHELINEYYMYALMKSVEGEEALNYLVNRGFTEELIKSRGIGYAPNNAHFCHDFLKQKG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + E EAGLL + + + YDRFR+R++FP+++++G+++ F GRT + KYLNSP Sbjct: 176 YDIELAYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGFSGRT-YNNQEPKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K + LYN A ++K + ++L+EG+MDV+ AG++ VV+S Sbjct: 235 ETPIFQKRRLLYNLDNARKSIRK----------NDEVMLLEGFMDVIKADYAGLKTVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTAL+E + +L KL+ I L FDGD G A K + L G V V L + Sbjct: 285 MGTALSEDHMTVLKKLTSNITLMFDGDFAGQEATLKTGE---HLLKHGLNVFVVQLPKNM 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I +GK F + + + + N + I+ ++ Sbjct: 342 DPDEYIVKFGKEKFIEFLNNEKKSFIIYKVQFYREEIENNDLAYERHFKEITENISFVRS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPSQRLMQSSLVKGKL 476 L+ + D ++ + + + S Q+ + Sbjct: 402 SILKNKIVNDVADIFNIDANTIMSNVHQQPEFISYEEDYIGNTNDNSNSNTQNLNIVFTH 461 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K + ALL + + ++L + N Q ++ L + E Y+ + Sbjct: 462 LNKSEKAQRALLKHFMMDKDVFLNYNRQLEANDFTNKYFQSIFKALTDYYSENDYYSISD 521 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + ++ E + QLD + + + Y L K E Sbjct: 522 LILYIEDKDIREAIIQLDDYELNREPYDLE--------IEEYISTLNENKYEDS----IE 569 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E+ ++ + G+ E + ++ + + Q Sbjct: 570 ELNHKLKEALRIGDVESQKYYLQMIVDKNKQR 601 >gi|227496285|ref|ZP_03926581.1| possible DNA primase [Actinomyces urogenitalis DSM 15434] gi|226834210|gb|EEH66593.1| possible DNA primase [Actinomyces urogenitalis DSM 15434] Length = 668 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 144/681 (21%), Positives = 254/681 (37%), Gaps = 72/681 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I+ + I +++G++V G CPFHDEKTPSFH G + Sbjct: 5 IKREDIEAVRERAKIEDVVGEHVTLKSGG----VGSMKGLCPFHDEKTPSFHVRPQLGLW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118 +CF C GD +SF+ + SF E+V+ LA GV L D + + + L+ Sbjct: 61 HCFGCGEGGDVISFVEKINHLSFAEAVEYLAGRVGVQLRYEDSSGDVRRGVEPGTRQRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 VA ++F L A +L RG D A+ F +GYAP +L HLR K Sbjct: 121 EANRVAEEWFRSQLSPANPAAASAGRFLYGRGFDDAALARFDVGYAPPGWDNLAGHLRSK 180 Query: 177 GFSEEKIIEA-GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKY 233 GF+E +++ + G YDRFR+R+++PIR G + FGGR LS + KY Sbjct: 181 GFTEAELVASGLCGQGGAGGGRVYDRFRDRIMWPIRDVTGATVGFGGRRLSDEDKTVPKY 240 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LN+PET ++HK + LY A + R +++VEGY DV++ +GV Sbjct: 241 LNTPETAIYHKSQVLYGLDLAKKDIASQHR----------VVVVEGYTDVMAAHLSGVTV 290 Query: 294 VVSSLGTALTEYQLRLLWK------------------LSPRIVLCFDGDDPGLRAAYKAI 335 V++ GTA E +R++ + ++ FDGD G +AA +A Sbjct: 291 AVATCGTAFGEDHVRIVRRLLGDAADPSVGVVMGNRVRGGEVIFTFDGDAAGQKAALRAY 350 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + G DP G +L+ PL + + + N Sbjct: 351 GEDQHFAA---QTFVAVEPHGLDPCDLRLEEGNQGIPRLLERRKPLFEFVIRTCLANLDL 407 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--N 453 +T + R + I+D+ LR Y++ + + + R Sbjct: 408 DTAEGRVRGLRTAAPIVAGIRDRALRREYTRRLAGWVALPESDVLRAVQSAERRGPGAVQ 467 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDN 512 A ++ + + E +L T++ P + + N Sbjct: 468 ASSGGSGDAVLGTDARRPALEPVTDQVTALERQVLATMVQQPMAAARAGADTIESAAFSN 527 Query: 513 NELQKLWSFLFSDFVEQKYFLP-------------------EEIHQRLC---ERGFGELL 550 + + + + + +++ L Sbjct: 528 AVHRAAFEAIEAAGGVSRMQDEVTALTAGGKGLKEIERTAFAHWVEQVRLGATPEIDAAL 587 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 L + E + +++ + + R ++R+ E+ + +++A E Sbjct: 588 TALAVVTLPVATRRGSQEIDPDALQRYARDVVTSLARMG-VNRRLTELRGRQRRMSA--E 644 Query: 611 AEKTAILISILHEVHIQIHQI 631 L + + + Q+ Sbjct: 645 DPGYRELFEEIVGLENKRMQL 665 >gi|281355397|ref|ZP_06241891.1| DNA primase [Victivallis vadensis ATCC BAA-548] gi|281318277|gb|EFB02297.1| DNA primase [Victivallis vadensis ATCC BAA-548] Length = 618 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 144/650 (22%), Positives = 260/650 (40%), Gaps = 59/650 (9%) Query: 1 MNY--PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 MN+ +D I+D+ I LIG +V R TN Y CPFH EKTPSFH + S Sbjct: 1 MNFGVSKDIIEDIRARCDIVELIGTFVQLKRSGTNT----YKGLCPFHQEKTPSFHVDAS 56 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKI 113 + ++CF C GD F F++++ LA+ GV +P + ++ Sbjct: 57 RQTFHCFGCGKGGDVFRFYMDKENVGFVDALHMLASRVGVVIPENSGGGDPGEGRRRANE 116 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L ++ E FFH L + YL RGI E FK+G PD + ++ Sbjct: 117 RERLYQINEAFATFFHQVLVRNPNSPAAEYLRRRGIPPEVAERFKIGACPDEWTACLDYG 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-- 231 R GF++E+++ +G++ + +D F+ RL F I + +G+V+ F R+L Sbjct: 177 RSLGFTDEELVTSGIIRKKAETGRCFDHFKGRLTFAIENEQGRVVGFSCRSLEAKPLAGG 236 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KY+N+PET +F KG LY A + + ++ EG +D ++ +AG+ Sbjct: 237 KYINTPETPIFKKGNLLYALPLARK----------MMSDRNMAVICEGQLDSIAFHRAGI 286 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + V+ GT+ TE Q R+L + RI L D D G +A + ++++L + V Sbjct: 287 ECAVAPQGTSFTENQARILSRYCNRIYLALDSDSAGQKAILRDVEILLPMS---FDIKVV 343 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G+DPD G A ++ + +S+ + +L + + R + + Sbjct: 344 RIPGGKDPDELFAHGGAAALQQALDDSVSWLKVLCDSLPQRHDMGSAAGRGHAAVEVAGY 403 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN---------------ARH 456 +N I +Q Y + L E R ++N Sbjct: 404 LNRITNQVELELYVRDAAMLLGVSEDALYAELRQVSRKARRNEEFSRGGPAAEPAYTPNT 463 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY--DNNE 514 + P R L + S LL +N ++ + + N Sbjct: 464 GEFIPPRPRSENRPLPGIQQEDPCSPALLTLLELAVNSETAARQIAELVPPEELPDSNPI 523 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 + + + + +P E+ + L E E+ + L + + +A E+ Sbjct: 524 ARAVNLTVNLALNGEFEQVPAELSELLIEHPVPEISRILVSEFVCKDIPTAVEESAAE-- 581 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 L ++F+ ++ + Q+ + E+ L++ L + Sbjct: 582 ---------LRRQFKKEEQRL--LMLQMKNAST---PEERLALLTRLQSM 617 >gi|220907241|ref|YP_002482552.1| DNA primase [Cyanothece sp. PCC 7425] gi|219863852|gb|ACL44191.1| DNA primase [Cyanothece sp. PCC 7425] Length = 690 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 155/681 (22%), Positives = 279/681 (40%), Gaps = 72/681 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + I ++ +YV + D+ CCPFH++K+PSF + +K F Sbjct: 5 RLHPDTIEQVRQATDIVEIVSEYVVLRKAGR-----DFSGCCPFHEDKSPSFSVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDL 117 YYCF C G+ + FL + SF E V LA GVP+ +++K ++ L Sbjct: 60 YYCFGCGAGGNAIKFLMEIGKRSFSEVVLELAQKYGVPVKTLQDTEKQDLQRKLSLREQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ + +F+ H+L+ + Y+ R + I+ F++GYAP L +L ++ Sbjct: 120 YEVLALTCNFYQHALRQPQGYHALQYVQAARQLSEATIQEFQIGYAPAGWQVLYGYLVEQ 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++E LI YDRFR+RLI PI + +V+ FG RTL E KYLNS Sbjct: 180 KQYPVELVEQAGLIVPRKGGGYYDRFRDRLIIPIHDLQSRVVGFGSRTL-TNEEPKYLNS 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F+KGK L+ A + K + ++VEGY DV++L AG++NVV+ Sbjct: 239 PETEVFNKGKILFGLDKARGAIAK----------ADQAVVVEGYFDVIALHAAGIKNVVA 288 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA---YKAIDLVLCHLIPGNRVNFVLL 353 ++GTAL++ Q+R L + + + D A ++ ++ + + Sbjct: 289 AMGTALSQEQMRQLLRYCESKQIILNFDADKAGAKAAERAIGEIEDLAYRGEVQLRVLNI 348 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+D D +++ Y ++ LI ++ ++ +R + D+ ++ + + Sbjct: 349 PNGKDADEYLKEYSPNDYQTLIDQAPLWLNWQIERALVGQDLRQADQFQQVIQKMVQLLG 408 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ + LR +Y L Q + + R + R + QR +L + Sbjct: 409 NLPNASLRTHYIHYCAGLLSQGDARLALQLEEALRSQVRGQRWHGRSQKWQRPADFTLRE 468 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVEQKY 531 EA LL ++ P Q+ + L+ ++ + + + LW + + Sbjct: 469 A--------AEAQLLRIYLHCPPYRQDIHNALSQRELEFSLSHHRFLWRQILVVEEQHTP 520 Query: 532 FLPE-------EIHQRLCERGFGELLKQL-------DRQVRDAGLWSATTEANI------ 571 E E+ L E L+ L +QV T+ +I Sbjct: 521 PPDEQGQPPHPELAPGLAELDLITALQDLCTDFSQEMQQVFHLIQLDEKTQLDILRPALS 580 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQ-----------------IAQVTAKGEAEKT 614 + + +A KR R L E + + A+ E Sbjct: 581 IQAAAASLERIACEKRCRHLLELWETATQSAFSENSQKQVLSTYLKNMLDSEAEHIQELL 640 Query: 615 AILISILHEVHIQIHQIESQE 635 L E+ +I ++ QE Sbjct: 641 QEEDHWLQELE-RIRKLYYQE 660 >gi|319892619|ref|YP_004149494.1| DNA primase [Staphylococcus pseudintermedius HKU10-03] gi|317162315|gb|ADV05858.1| DNA primase [Staphylococcus pseudintermedius HKU10-03] Length = 595 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 153/637 (24%), Positives = 259/637 (40%), Gaps = 44/637 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I+++ I +++ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIPQNTIEEIKQQSDILDIVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 +CF C G+ F+ + SF E+VQ L + + + +I+ Sbjct: 56 ICHCFGCKKGGNVFQFIQEIENISFTEAVQHLGERVNIKVDIDETNDDMHIASDDLKMIQ 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E ++H+ LK ++ YL ERG I+ K+G+APDS + + + +KG+ Sbjct: 116 MHEEILSYYHYLLKKTVEGEQALNYLYERGFTDDMIDARKIGFAPDSSHFATDFMEKKGY 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + EAG+L D YDRFRNR+IFP+ +++G+++ + GRT + KYLNSPE Sbjct: 176 DLQLGYEAGILSRNDTDFNYYDRFRNRIIFPLANAQGRIVGYSGRT-YTEQEPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F K K LYN A +++ IIL+EG+MDV+ AG++NVV+S+ Sbjct: 235 SPIFQKRKLLYNLSEARKSIRQK----------DEIILLEGFMDVIKADDAGLKNVVASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT L+ + L KL + L FDGD G+ A K L V V L D Sbjct: 285 GTQLSNEHITFLKKLCSHVTLMFDGDFAGIEATMKTGQ---QLLQQQFNVYVVQLPSKMD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I YG F + ++ ++ N + I Sbjct: 342 PDEYIMKYGAEKFNSFVNTEKKAFVSFKLQQHQHEIQNNDLAYEKYYHMFVEDAALISSH 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR Q + + E +Q + Sbjct: 402 ILRNKVVQNASELFKVSADSLNKEVESVHPQQHFEQAGPIPIQTTQWM---------QHN 452 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E A+L I + YQ++ + + N ++++ L + + F E Sbjct: 453 KYEKAERAILKHFIMDKEVFLSFYQDIDETDFTNEYFKRIFITLREFYSKFDSFTMSEFV 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+L L + Y Q + ++ E + Sbjct: 513 TYIDHDILKEVLIYLWDY--------PLNREPYENEIADYIQVMTEHRYSES----IESL 560 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +++ + T G+ + + V+ +++SQE Sbjct: 561 HEKLREATRVGDIA-SQKYFLEMI-VNKNRARLKSQE 595 >gi|257898869|ref|ZP_05678522.1| DNA primase [Enterococcus faecium Com15] gi|257836781|gb|EEV61855.1| DNA primase [Enterococcus faecium Com15] Length = 627 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 153/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPPEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 FS E + +GL + + DRF R++FP+R+ +GQ I F GR L+ + Sbjct: 193 SFSNELLERSGLFV-THDDGRLSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + G V V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQHAQTKRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 VRKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|257887738|ref|ZP_05667391.1| DNA primase [Enterococcus faecium 1,141,733] gi|257823792|gb|EEV50724.1| DNA primase [Enterococcus faecium 1,141,733] Length = 627 Score = 343 bits (878), Expect = 8e-92, Method: Composition-based stats. Identities = 152/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 FS E + +GL + + DRF R++FP+R+ +GQ I F GR L+ + Sbjct: 193 SFSNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + ++L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVVLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + G V V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQYTQTKRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|114330326|ref|YP_746548.1| DNA primase [Nitrosomonas eutropha C91] gi|114307340|gb|ABI58583.1| DNA primase [Nitrosomonas eutropha C91] Length = 597 Score = 343 bits (878), Expect = 9e-92, Method: Composition-based stats. Identities = 185/630 (29%), Positives = 297/630 (47%), Gaps = 66/630 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI++LL I I +++ +++ + N + ACCPFH+EKTPSF N SK FY Sbjct: 2 IAQPFIQELLDRIDIVDIVARHLKLKKAGAN-----FTACCPFHNEKTPSFTVNSSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----------- 111 +CF C G+ ++FL G SF+E+V+ LAA AG+ +P K Sbjct: 57 HCFGCGRHGNAINFLMEHSGVSFVEAVESLAAHAGMQIPAWKNINSKASDSGETSLNEVR 116 Query: 112 -----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 + +DL +E A F+ LK + + YL +RG+ F +GYAP Sbjct: 117 FDEVIQTSSDLYGRMEQAAKFYRVQLKQS--ELAIAYLKDRGVSGQTALHFGIGYAPSGW 174 Query: 167 YSLREHLRQ--KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 +L E G S ++ +GL I S +YDRFR+R++FPI + ++I FGGR Sbjct: 175 QNLAEIFTDYPSGDSSHALVRSGL-IVAHESKKNYDRFRHRIMFPILDLKKRIIGFGGRA 233 Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 L E KYLNSPET LF KG+ LYN A ++KS R +++VEGYMDV+ Sbjct: 234 LDGSEP-KYLNSPETPLFIKGRELYNLVSAGPAIRKSGR----------VVVVEGYMDVV 282 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 L Q G++NVV++LGTA T ++ L + + +V CFDGD+ G +AA++A++ L L Sbjct: 283 MLVQHGIENVVATLGTATTSTHIQKLLRYTDEVVFCFDGDEAGTKAAWRALETSLPQLKD 342 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 G + F+ L EDPDS+IR YGK AF+ L+ ++ L K + + +T + RA L Sbjct: 343 GKDIKFLFLPDKEDPDSYIRKYGKDAFKNLLEKAQLLSVFFCKELSSRVNLSTSEGRARL 402 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + + I + + R+ +L + + + KKN + S+ Sbjct: 403 VQQAEPLLVQINAPI----FGFMLMKRISELAGVDQNQLIAFLKPGKKNQPSISRSNVSR 458 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 L + L+ L++ PA + + +L + NE + L + L Sbjct: 459 PLSVTPY-------------RRLIQILLHTPAYVDKLDTDLFALNDGQNEEKALLAALVD 505 Query: 525 DFV-----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTE--ANIVDVRQ 576 I L + LL+++ R + + W E +V +R+ Sbjct: 506 FLKTSSCTSMDELNSVAIMLHLDQTPHRVLLEKIARDIHVKDVDWDIDAEFTGAMVRLRE 565 Query: 577 GYQQALALYKRFRLLS----RQKEEIEKQI 602 +++ R L+ +K+E+ + I Sbjct: 566 AQRKSRVAELHNRPLASLTPEEKKELRRLI 595 >gi|301301337|ref|ZP_07207481.1| DNA primase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851065|gb|EFK78805.1| DNA primase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 617 Score = 342 bits (877), Expect = 9e-92, Method: Composition-based stats. Identities = 150/640 (23%), Positives = 297/640 (46%), Gaps = 39/640 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I +L ++ I ++I QYV + N ++ CPFH EKTPSF N+ K + Sbjct: 5 IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CFSCH G+ F+ L G SF ESVQR+A +A + + + + + + + +L Sbjct: 60 HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + T +HH L N + YL +RGI+ IE F++G+AP++ QK + Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENNILEAFFKEQKLYD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 + + ++GL I+ ++ +RF R++FPIR + GQ IA+ GR L + ++ KYLNSPE Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L+NF A +++ IL EG+MDV++ ++G++N ++S+ Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGIKNGIASM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ L +++ +V+C+DGD+ G A +A++++ V + + D Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346 Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD F + YG F +L + ++ ++++ N +++ E + I ++D Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDKNLNNENDQLEYIRDILQEIAKVRD 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + R + ++ ++ + +Q +Q++ ++ + K + Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLKQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466 Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + K E LL +++ + + D + + Q +++ + F + Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYE 525 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + E G +++ L+ + Q L+L L Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++++ ++ + + + K L L + + +S Sbjct: 575 KIKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614 >gi|269976441|ref|ZP_06183426.1| DNA primase [Mobiluncus mulieris 28-1] gi|269935242|gb|EEZ91791.1| DNA primase [Mobiluncus mulieris 28-1] Length = 688 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 148/705 (20%), Positives = 251/705 (35%), Gaps = 99/705 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + IPI ++G YV R N CPFHDEKTPSFH Sbjct: 4 KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F+E+++ LA AG+ L V+ + + L Sbjct: 60 WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + + +++ R S F +GYAP +L HLR G Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235 F++ +I GL S YD FR+R+ +PIR + G V+ FG R L + KY+N Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + + R ++VEGY DV++ +GV V Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287 Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335 ++ GTA T R++ ++ FDGD G +AA KA Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + G DP G A L+ PL + + K Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + R I+D+ LR Y + L ++ + G++ + ++ Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464 Query: 456 -----------------------------------HRDQKGPSQRLMQSSLVKGKLSKKP 480 + + L G + Sbjct: 465 EARGAGLSRGSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524 Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526 E L+ ++ PA+ E + L+ + L+ ++ + Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 P R + L V D + D + + Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L+R+ + ++ ++ A E+ + + L E+ Q+ + Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684 >gi|227874956|ref|ZP_03993107.1| possible DNA primase [Mobiluncus mulieris ATCC 35243] gi|227844476|gb|EEJ54634.1| possible DNA primase [Mobiluncus mulieris ATCC 35243] Length = 688 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 148/705 (20%), Positives = 251/705 (35%), Gaps = 99/705 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + IPI ++G YV R N CPFHDEKTPSFH Sbjct: 4 KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F+E+++ LA AG+ L V+ + + L Sbjct: 60 WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + + +++ R S F +GYAP +L HLR G Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKGWGNLLGHLRDSG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235 F++ +I GL S YD FR+R+ +PIR + G V+ FG R L + KY+N Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + + R ++VEGY DV++ +GV V Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287 Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335 ++ GTA T R++ ++ FDGD G +AA KA Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + G DP G A L+ PL + + K Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + R I+D+ LR Y + L ++ + G++ + ++ Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464 Query: 456 -----------------------------------HRDQKGPSQRLMQSSLVKGKLSKKP 480 + + L G + Sbjct: 465 EARGAGLSRGSGGSNGYGSGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524 Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526 E L+ ++ PA+ E + L+ + L+ ++ + Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 P R + L V D + D + + Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L+R+ + ++ ++ A E+ + + L E+ Q+ + Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684 >gi|311693207|gb|ADP96080.1| protein containing DNA primase, DnaG/TOPRIM [marine bacterium HP15] Length = 575 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 171/602 (28%), Positives = 287/602 (47%), Gaps = 39/602 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F+++LL I ++ LIG + + N Y ACCPFHDEKTPSF+ KGFY Sbjct: 5 IPQQFVENLLDRIDLAELIGSRITLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G F E+V+ LA G+ +P D +++ + L ++ Sbjct: 60 HCFGCGAHGDAISFVREFEGLGFTEAVEELAKRVGLEVPY-DRAAKQEIQQARTLTDALD 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A+ F+ +LK + YL +RG+D+ IE +++GYAP + +L + + + + Sbjct: 119 FASRFYQSALKGQQGAYARDYLQQRGLDNAIIEQYQVGYAPSTGTALFDVASK----DLQ 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 D D FRNR++FPIR+SRG+ +AFGGRTL + KY+NSPE+ +F Sbjct: 175 GPLIETGTVSDKYGKPRDLFRNRVMFPIRNSRGRTVAFGGRTL-GDDKAKYINSPESDVF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK + +Y F A +++ +++VEGYMDV++L Q G+ V++LGTA Sbjct: 234 HKSREIYGLFEAKQAIRQL----------DKLLVVEGYMDVIALAQHGIHYAVATLGTAT 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L L K IV CFDGD G RAA +A++ L + G + F++L +GEDPD+ Sbjct: 284 NQDSLTALLKQVRHIVFCFDGDQAGFRAADRAMENALELMADGLHLQFLMLPQGEDPDTL 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G AF+K I + PL L+ R++E P+ R EL ++ +N + LR Sbjct: 344 VRKEGPEAFQKRIEGATPLSRYLFDRQSEGLDLQLPEHRGELRARVEPLLNKMPRSTLRD 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + Q + GR+ + + +L + S+ Sbjct: 404 AMWHEMLRLCGGRNQWQSRQQGQKGRWNGERRDRVSEDRIDVKLSKDSI----------- 452 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI-HQRL 541 L L L+ P + E + LA N+ + ++ ++ + + L + Sbjct: 453 ----LCLALLEAPDLATEVTE-LARSSRQFNQARNFAEWILANDIRDRKTLVRTLALDTG 507 Query: 542 CERGFGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 F L ++ R++ L +A + + Q+ L + L+ ++ + + Sbjct: 508 ARERFYHLFDGIEHIPARESTLAAARELLSPNEEASRQQRLATLLRNLSNLTSEERQELR 567 Query: 601 QI 602 + Sbjct: 568 AL 569 >gi|17228818|ref|NP_485366.1| DNA primase [Nostoc sp. PCC 7120] gi|17130670|dbj|BAB73280.1| DNA primase [Nostoc sp. PCC 7120] Length = 640 Score = 342 bits (877), Expect = 1e-91, Method: Composition-based stats. Identities = 163/655 (24%), Positives = 289/655 (44%), Gaps = 45/655 (6%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I ++ I +++ +YV +R D+ CPFHDEK+PSF + Sbjct: 1 MQIPRLHPDTIDEVKHRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K YYCF C G+ + FL L SF + V LA VP+ P +++++ + Sbjct: 56 TKQMYYCFGCQAGGNSIKFLMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQISL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ A F+ H+L+ ++ +R Y L +R + I+ F LGYAP +L + Sbjct: 116 REQLYEVLASAASFYQHALRQSQGQRAMQYLLSDRQFNEVTIQQFGLGYAPAGWETLHRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + +AGL+ A YD FR+RL+ PIR +G+VI FGGRTL E Sbjct: 176 LVEDKHYPVHLVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTL-TDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+KGK L+ A + + ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFNKGKTLFALDQAKAGI----------SQFDQAVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 + V+SLGTAL+ Q+RL+ + + ++VL FD D G AA +AI ++ ++ Sbjct: 285 NHAVASLGTALSLEQVRLILRYTDSKQLVLNFDADKAGTNAAERAIGEIADLAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + G+D D ++R + + +L+ + ++ ++ ++R + ++ Sbjct: 345 KILNIPDGKDADEYLRSHTPADYGQLLANAPLWLNWQIQQIIKDRDLKQATDFQQVTQQF 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + +I + R YY + L + I K S R + Sbjct: 405 VKLLKNIVNSDTRNYYVSYCAEILSLGDTRLIPLRVENLLTQITPTTAGYNKPLSTRTNR 464 Query: 469 SSLVKGKLSKKP-------SLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLW 519 S + + L EA LL ++ P + +EL ++ + + + LW Sbjct: 465 SLSLVPNPTSSLNGDRSLLELAEALLLRIYLHCPEQRRVIMEELEARNLEFSLSHHRFLW 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + EQ ++ RL + + + + + T+ I+ Q Q Sbjct: 525 QQILECTGEQV-----DLVSRLQDIYLE--IAEELGVISHLFHLNEKTKKEIMRTTQVVQ 577 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A+A +R ++ + + + E EK + I++ +++ Q Sbjct: 578 AAIACMERVLT-EKRYRHFLELWQETDPETEPEKWQSYYQAFYTEKIKLQELDRQ 631 >gi|332531767|ref|ZP_08407652.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505] gi|332038743|gb|EGI75185.1| DNA primase [Pseudoalteromonas haloplanktis ANT/505] Length = 583 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 277/629 (44%), Gaps = 56/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DLL I +LI V + DY ACCPFH+EK+PSF + K F Sbjct: 4 KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C G+ +SF+ F+++++ +A++ + +P E+ + Sbjct: 59 YHCFGCGANGNAISFVMEYEKLEFVDAIEEIASMLNLEVPREQGANSAPERTAAQKRSDY 118 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ F+ H LK ++ + Y+ RG+ ++ F +GYAP L L + Sbjct: 119 DLMLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGETVKKFMIGYAPSEWDGLCLQLGRNK 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +E+++E L + +D FR+RL+FPIR RG+VIAFGGR + + KYLNSP Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVIAFGGRVMQADQGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG LY + A +K +++VEGYMDV++L + G++ V+S Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVMIVEGYMDVVALAEQGIEYAVAS 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T + L++ + +++ C+DGD G AA++A++ L +L G + F L GE Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALQFAFLPDGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS ++ GK FE + ++ +L+ + ++ +A+L I I Sbjct: 348 DPDSLVQKEGKEQFELRLSQADDFTKVLFNKLSQEVDLTLDSGKAKLLSAALPLIEKIPS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +Y + I ++L +L + + + + K+ + + Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNSRLKTPKQQHSIERKFKITPM------------ 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LI HP + + L ++ N L L +E++ ++ Sbjct: 452 -------RQAIGILIQHPNLAKSVP-YLPELAQMNIAGIGLLLRLQEQALEKENVTTAQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E L +L E N + ++ + + L+ + E Sbjct: 504 LEFFRGTEDYEPLIKLATW---------QHEINEERLETVFKNTFK-FIEDQCLNYRLET 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626 + I T +++ ++ + Sbjct: 554 LL--IKDKTQGLSSDERLECHLLMTALKA 580 >gi|225856716|ref|YP_002738227.1| DNA primase [Streptococcus pneumoniae P1031] gi|225724695|gb|ACO20547.1| DNA primase [Streptococcus pneumoniae P1031] Length = 586 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 259/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G++IAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKIIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ + G++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELERLISQKRRME 586 >gi|329943979|ref|ZP_08292248.1| DNA primase [Actinomyces sp. oral taxon 170 str. F0386] gi|328531412|gb|EGF58254.1| DNA primase [Actinomyces sp. oral taxon 170 str. F0386] Length = 671 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 149/686 (21%), Positives = 265/686 (38%), Gaps = 76/686 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I+ + + I +++G++V G CPFHDE+TPSFH G++ Sbjct: 5 IRREDIEAVRERVRIEDVVGEHVTLKSGG----VGSLKGLCPFHDERTPSFHVRPQLGYW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119 +CF C GD ++F+ + F E+V+ LA GV L + ++ + L+ Sbjct: 61 HCFGCGEGGDVITFIEKINHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F L + +L RG D HA F +GYAP +L +LR G++ Sbjct: 121 ANRLAEAWFREQLAIPEAQAGRDFLTSRGFDRHAAAHFGVGYAPTGWDNLARYLRGAGYT 180 Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 E +++++GL G + YDRFR RLI+PIR G + FG R LS+ + KYLN+P Sbjct: 181 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEDDQGPKYLNTP 240 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK + LY A + +S R I++VEGY DV++ +GV V++ Sbjct: 241 ETPVFHKSQVLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVAT 290 Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337 GTA +R++ + ++ FDGD G +AA +A Sbjct: 291 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 350 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 + + G DP G +L+ +PL + + + + +T Sbjct: 351 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDQGIPRLLSRRVPLFEFVIRTSLSHLDLDT 407 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + R + I+D+ L+ Y++ + L + + GR + R Sbjct: 408 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHSAVRAAGRRGPQPPAAR 467 Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511 + P+ ++ E L +I P EL + Sbjct: 468 GGQWPADETAGPDAATPVRGLPPVTDPVEQLEREALAVIIQFPVAAHRAGADELGADSFG 527 Query: 512 NNELQKLWSFLFSDFVEQ--KYFLPEEIHQRLCERG--------------------FGEL 549 + ++ + + + + + + E+ Sbjct: 528 QLTHRAVYEAVAAAGGTGEVPGLVRQAVAAGMGEQEAQRRATLRWLQQVRDGTIGLVEAA 587 Query: 550 LKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 + +L V L + VDV Y + + ++RQ E+ + +++ Sbjct: 588 ITELA--VAPLPLPTIRGRGTEVDVSGLDRYAKGVISSLAVMGINRQLVEMRSRHRRMSP 645 Query: 608 KGEAEKTAILISILHEVHIQIHQIES 633 + E L S + + + QI Sbjct: 646 Q--DEGYRELFSQIAALEQRRMQIRQ 669 >gi|282896680|ref|ZP_06304688.1| DNA primase [Raphidiopsis brookii D9] gi|281198398|gb|EFA73286.1| DNA primase [Raphidiopsis brookii D9] Length = 636 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 154/651 (23%), Positives = 267/651 (41%), Gaps = 43/651 (6%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D ++++ I ++I YV RR D+ CPFH+EKTPSF + Sbjct: 1 MQIPRLHPDTVEEVKHRADIVDVISDYVVLRRRGK-----DFVGLCPFHEEKTPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K YYCF C G+ + F+ L F E V LA +P+ P +++++ + Sbjct: 56 NKQIYYCFGCQASGNAIRFIMDLNKRKFAEVVLDLAKRYQIPVKTLAPEQRQELQRQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172 + L ++ + F+ H L+ ++ YL ++ + +E F LGYAP +L + Sbjct: 116 RDQLFEVLASTSQFYQHVLRQDIGQQALQYLQKKRFLKTETVEKFALGYAPPGWETLYHY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + + +AGL+ YD FRNRL+ PIR +G+VIAFGGRTL E Sbjct: 176 LVENKSYPAQLVEKAGLIKPRKEGGGYYDVFRNRLMIPIRDVQGRVIAFGGRTL-TDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF K K L+ A + + K ++VEGY D ++L G+ Sbjct: 235 KYLNSPETELFDKSKTLFALDVAKDAISKL----------DQAVVVEGYFDAIALHANGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 NVV+SLGTAL+ Q+RLL + S ++VL FDGD G+ A +AI ++ R+ Sbjct: 285 NNVVASLGTALSLEQVRLLLRYSESKQLVLNFDGDKAGINATERAIGEISNLAYKGEVRL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + G+D D +++ + T +E+L+VE+ +D + + R P + + Sbjct: 345 KILHIPDGKDADEYLKNHSVTDYEQLLVEAPLWLDWQIAQVIQGRDLKQPTDFQLVSREF 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I + YY + L + I R Sbjct: 405 VKLLQKILNSDTLNYYISHCAEILSLGDTRLIPLRVENLITQVAPRRTPTPILRPPASPN 464 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526 + + E LL ++ P Q + L +++ + + + LW Sbjct: 465 THQISHPQPSLLEQAEGLLLRIFLHCPQERQVIIETLGSSNLEFSVSHYRFLWEKSLQF- 523 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQALA 583 ++ +L + E N ++ QA Sbjct: 524 ----PSQTLDLISQLQNLYLET-----QNDLGPVEHIFQLNEKNKQEILLRTNQLVQAAI 574 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + + ++ + ++ ++I ++ Q Sbjct: 575 ACMEKVFRENRYRHFLELWQKTDPSTDPDQYNLYAQTIYADKMRIQELSKQ 625 >gi|268610741|ref|ZP_06144468.1| DNA primase [Ruminococcus flavefaciens FD-1] Length = 579 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 149/552 (26%), Positives = 253/552 (45%), Gaps = 26/552 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F+ L PI ++G YV+ RR N Y CPFH EKTPS Sbjct: 1 MPRDDEFLYTLRNANPIETVMGSYVNLIRRGRN-----YVCSCPFHSEKTPSCTVFTETQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD ++F + F+E+V+ LA +G+ +P + + K +T + + Sbjct: 56 SFYCFGCGAGGDVITFTMKIENLDFMEAVKLLAQRSGIEVPERNNRDSSYAKRKTRIYEM 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A + ++ +L DK Y +R + I+ + LGYAPDS L +HL+ KG+++ Sbjct: 116 NRIAANLYYTNLFKGSDKSGLKYFADRKLTPQTIKKYGLGYAPDSWNFLTDHLKSKGYTD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++I +A L G + ++D FR R++FPI RG +I FGGR L KYLN+ T Sbjct: 176 DEIADAWLG--GQKNGRTFDMFRKRVMFPIVDMRGNIIGFGGRVL-DDSKPKYLNTGATP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG NL++ A N K +IL EGYMDV+++ QAG NVV++LGT Sbjct: 233 VFDKGSNLFSMNFAKNANTK------------RLILCEGYMDVIAVNQAGFDNVVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T Q RL+ + +++ +D D G +A KAI G + + + +DPD Sbjct: 281 AITPDQARLISHYAEEVIIAYDSDGAGQKATQKAI---NHFADVGLQTKIIHMEGAKDPD 337 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ +G F L+ S +D + + + ++ R EL + I+ Sbjct: 338 EYIKKFGVNRFRLLLDGSDDAIDFMLDKCEDGLDLSSEMGRVELLKRTSKVLAGIESALE 397 Query: 421 RYYYSQAIRDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + Q+ + +I + RY K R+ K + + + Sbjct: 398 REVYISRTSKKCDIPVQVLKSHIDDMLKKNRYSAKKNEWRNIKANTNFVRDDVNPEAVNH 457 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +K + E ++ L+ P ++ + + + +K++S L + F + Sbjct: 458 RKEARAEEMIIYYLLKRPQEWEDVEKAIPPDSFVTPFHKKVYSALLDKMRDADKFTILML 517 Query: 538 HQRLCERGFGEL 549 + + G + Sbjct: 518 NGEFTQEEMGRI 529 >gi|307564504|ref|ZP_07627045.1| DNA primase [Prevotella amnii CRIS 21A-A] gi|307346864|gb|EFN92160.1| DNA primase [Prevotella amnii CRIS 21A-A] Length = 645 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 151/667 (22%), Positives = 278/667 (41%), Gaps = 54/667 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + + + I +++ ++ + T Y CPFHD+ TPSF + KG Y Sbjct: 2 IDRQTVDKITDAVNIVDVVSDFISLRKAGT-----SYKGLCPFHDDTTPSFSVSPVKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G+ + F+ ++ E+++ LA + + + +++ ++ + + Sbjct: 57 KCFACGAAGNAVKFVMQYEQMTYWEALRWLAKKYNIEVKERQMTSQEKQQASMRESMFII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A+ +F L ++ D + Y RG I+ F LGY+ R SL + G+ Sbjct: 117 NEWASRYFQDVLHSSTDGKAIGLQYFRSRGFRDDIIKKFMLGYSLPRRDSLAMAALEAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E ++ GL + DRF R+IFP S G+V FGGR L KG KY+N Sbjct: 177 KKEFLLNTGLC-FERQTGELTDRFSGRVIFPWLSLSGKVTGFGGRLLDSRTKGVMQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ +FHK + LY F A + K + +VEGY DVLSL Q G++NVV Sbjct: 236 SPDSEIFHKERELYGIFWAKKAIAK----------HDLVYMVEGYTDVLSLHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+R+L + + IVL +DGD G AA + D++L G V +LL Sbjct: 286 ANSGTALSIFQIRMLHRFTSNIVLIYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F + Y + I E +++K + P +R+E + I+ I Sbjct: 343 GKDPDEFAKMYSSEELVRYIEEHQTDF-IVFKIALLLKGVTDPIKRSEAINSIVESISVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG---YGRYWKKNARHRDQKGPSQRLMQSSLV 472 KD LR Y R Q I++ + + ++ + ++ S Sbjct: 402 KDPVLRDTYLHECMARTGVAEQTLISQMNRFIYNNKERERKDSTPRAEIKAEPAATSKSF 461 Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYD 511 ++ + E L+ +I + I+++ L ++ + Sbjct: 462 PTAITAQAEDVETWLIQQVIRYGEQIIIKDVKDNSSGNLISLNVAQYISYDLGLDNLSFT 521 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 K+ ++ + Q + E+ +L + S + + Sbjct: 522 FPLYNKILQEAIEHSSDEGFVAENYFIQH-PDINISEIATEL-SVEKFKLSESLQPKQDE 579 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + + ++R + + E+++QI Q K + + ++ I + Sbjct: 580 AALLENVKHLILDFRRNY-VEHRYNELKEQIKQTQTNEGKIKALAELQKMQQLRNIIAKK 638 Query: 632 ESQEAMI 638 +I Sbjct: 639 LGNNIII 645 >gi|77359316|ref|YP_338891.1| DNA primase [Pseudoalteromonas haloplanktis TAC125] gi|76874227|emb|CAI85448.1| DNA primase [Pseudoalteromonas haloplanktis TAC125] Length = 583 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 157/629 (24%), Positives = 277/629 (44%), Gaps = 56/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI DLL I +LI V + DY ACCPFH+EK+PSF + K F Sbjct: 4 KIPRNFIDDLLARTDIVDLIDSKVGLKKAGK-----DYQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CF C V G+ +SF+ F+++++ LA++ + +P E+ + Sbjct: 59 YHCFGCGVNGNAISFVMEYEKLEFVDAIEELASLLNLEVPREQGSGSAPERTAAQKRSDY 118 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L+ F+ H LK ++ + Y+ RG+ ++ F +GYAP L L + Sbjct: 119 DLMLHTARFYQHQLKHHSNSAAVIEYVKGRGLSGEIVKKFMIGYAPSEWDGLCLQLGRNK 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +E+++E L + +D FR+RL+FPIR RG+V+AFGGR + + KYLNSP Sbjct: 179 EQKEQLVELKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVVAFGGRVMQADQGPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHKG LY + A +K +++VEGYMDV++L + G++ V++ Sbjct: 238 ETRIFHKGFELYGLYEAKQAHKKL----------DHVLIVEGYMDVVALAEQGIEYAVAA 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T + L++ + +++ C+DGD G AA++A++ L +L G +NFV L GE Sbjct: 288 LGTATTSEHMHTLFRTTDKVICCYDGDRAGRDAAWRALENALPYLNDGKALNFVFLPDGE 347 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS ++ GK FE+ + + +L+ + + +A+L I I Sbjct: 348 DPDSLVQAEGKDKFEQRLNAADDFTKVLFNKLSLEIDLTLDSGKAKLLSAALPLIEKIPS 407 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +Y + I ++L +L + + + + K+ + + Sbjct: 408 ----EFYQENILEQLGRLIGRTREQLNNRLKTPKQQHSIERKFKITPM------------ 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + LI HP + + L D+ N L L ++++ ++ Sbjct: 452 -------RQAIGILIQHPQMAKSVP-YLPDLAQMNIAGIGLLLRLQHQALQKEDVTTAQL 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + L +L + + Q + + L+ + E Sbjct: 504 LEFFRGTDDYDPLTKLATWQHQIN----------EERLETVFQNTFKFIEDQCLNYRLET 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626 + I T +++ ++ + Sbjct: 554 LL--IKDKTQGLNSDERLECHLLMTALKA 580 >gi|257438256|ref|ZP_05614011.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257199333|gb|EEU97617.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 591 Score = 342 bits (876), Expect = 1e-91, Method: Composition-based stats. Identities = 142/582 (24%), Positives = 256/582 (43%), Gaps = 33/582 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++I++L I +++G YV R+ Y CPFH EKTPSF+ + Sbjct: 2 IPHEYIEELTRRTDIVDVVGNYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C V GD + F+ + + E+V+ LAA AG+P P D K + +++ ++ + + Sbjct: 57 YCFGCGVGGDVIHFVRRINSIDYTEAVKMLAARAGMPEPQEDDKTGR---LRSRILSMNK 113 Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +FH L + ++ Y RG+D I F LGYAPD L ++LR KG+++ Sbjct: 114 EAARYFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPDDGQGLYQYLRDKGYNQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ +GL + Y F R++ PI RG +IAFGGR L KY+NSPET+ Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK ++ A + +L EGYMDV+S+ QAG+ V + GT Sbjct: 232 VYHKSDTVFALQIAKKSASR------------RFVLCEGYMDVISMHQAGIDTAVCACGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q++L+ + + ++L +D D+ G +A ++++L +V + + +DPD Sbjct: 280 ALTPDQVKLISQYAEEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YG F+ L+ +D R +R E N + + Sbjct: 337 EYIKKYGSERFKALLDGVGNALDFRLGRLKNKYDLKQDAQRLEYVKEAVNMLAERSNPTE 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-----RLMQSSLVKGK 475 + Y+ + + +T+ + + R + Q ++ G Sbjct: 397 QEVYAGRLAEETNISKNAIMTQLADAVKRSNSKRRWAQNQARLQSGEMHQISVPYSAGGS 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + E LL ++ P+ + + +L+ ++ + ++L+ + Sbjct: 457 QALGVASAEQRLLAAMLREPSYIPQVRAQLSPEKFVLPQQKELYEAFLQCQEQGIEISLS 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + E E L +L Q D + + +G Sbjct: 517 TLRPFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARG 557 >gi|317505340|ref|ZP_07963268.1| DNA primase [Prevotella salivae DSM 15606] gi|315663554|gb|EFV03293.1| DNA primase [Prevotella salivae DSM 15606] Length = 647 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 147/668 (22%), Positives = 278/668 (41%), Gaps = 65/668 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ + I +++ ++V + +N Y CPFH+EKTPSF+ + ++G Sbjct: 2 IDSQTVERIKDASNIVDVVSEFVTLRKSGSN-----YKGLCPFHNEKTPSFYVSPARGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +SF+ ++ E+++ LA + + ++++ + + + Sbjct: 57 HCFGCGKGGNAVSFIMEHEQMTYPEALRWLAHKYNIEIKERELTDDEKREQSERESMFII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E +++F L N D Y RG I F LGY R +L +QKG+ Sbjct: 117 NEWVSNYFEDILHNNVDGVAIGMQYFRTRGFRDDVIRKFNLGYDLADRLALARAAKQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ G+ D DR+ R+IFP G+V+ FGGR L KG + KY+N Sbjct: 177 QDEYLLKTGVCYRNDRG-ELIDRYSGRVIFPWIGISGKVVGFGGRVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK LY + A + K R + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSDIYHKDHELYGIYQAKKAIAKEDR----------VYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ +L + + I L +DGD G+ AA + D+ L G + +LL Sbjct: 286 ANSGTALSIHQIHMLHRFTANITLLYDGDSAGIHAALRGTDM---LLQEGMNLKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 EDPDSF R + F+ I + +K + N P +R+E + I+ + Sbjct: 343 SEDPDSFARKHSSDEFKDYIESHATDF-IRFKTALLLDNENDPLKRSEAINSIVTSISMV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 ++ LR Y Q R+ IT+ + R K S Q K + Sbjct: 402 QNPILRDTYLQDCSHRIGINEATLITQMNNMIRDRKATGSMSPTGVQSAPTGQQPYEKNQ 461 Query: 476 LSK-------KPSLREAALLLTLINHPA--ILQEQYQE------------------LADI 508 + S E +L +I + + + + Sbjct: 462 AAALAQSQMHTESKVEQLMLQLIIKYGDRLVFKNIKDADGNLIEFSIGEYIHYNLSADGL 521 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 ++N ++ + ++ + + QL + + + ++ Sbjct: 522 SFENELYNRILQEVVEKVSDRSFKTEPYFVHH-----HDINISQLAINMTEERFKLSESQ 576 Query: 569 ANIVDVRQGYQQALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 D +A+ L R + + E++++IA+ ++ ++ L++ E+ Sbjct: 577 QEKNDDDSLKNRAIHLMLDFRMEYIEKHLRELKQKIAKASS----DELLSLMAEYKEMTE 632 Query: 627 QIHQIESQ 634 + + Q Sbjct: 633 MRNILAKQ 640 >gi|121604511|ref|YP_981840.1| DNA primase [Polaromonas naphthalenivorans CJ2] gi|120593480|gb|ABM36919.1| DNA primase [Polaromonas naphthalenivorans CJ2] Length = 676 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 181/703 (25%), Positives = 281/703 (39%), Gaps = 111/703 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ FI++LL + +++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MAIPQSFIQELLARTDVVDIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQ 114 FY+CF C G+ +SFL G +FIE+V+ LA G+ +P D K + + Q Sbjct: 56 FYHCFGCGKNGNAISFLMDHAGMTFIEAVKDLAQQYGLQVPEDDVSPQDRAKAAQAREQQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + SL+ + +R Y RG+ + F LGYAP+ SL Sbjct: 116 ATLTSVLEKAGRAYIRSLRTS--ERAIQYFKRRGVSGEIAKTFGLGYAPEGWRSLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDGDN-------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 ++ ++E+GL+I G+ A YDRFR+R++FPIR+ +G+ I FGGR L Sbjct: 173 -PDYNNPLLVESGLVITGEPGEDNAAGEAKRYDRFRDRVMFPIRNVKGECIGFGGRVL-G 230 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 E KYLNSPET +F KG+ LY F A L+ + ++ EGYMDV++L Sbjct: 231 DEKPKYLNSPETPVFSKGRELYGLFEARTALR----------EHGYALVTEGYMDVVALA 280 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G N V++LGTA T ++ L++ + +V FDGD G RAA KA+D L Sbjct: 281 QLGFANAVATLGTACTAEHVQKLFRFTESVVFSFDGDSAGRRAARKALDAALPFASDVRT 340 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 V F+ L DPDSFIR +G+ F + +++PL L + E +T + RA + + Sbjct: 341 VKFLFLPAEHDPDSFIREHGQEGFAACVAKAVPLSRFLIEAAAEGCDLDTAEGRAHMASN 400 Query: 408 LKNCINHIKDQKLRYYYSQAIR-------DRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + + + + L+ I L QL+Q Y + Sbjct: 401 ARPLWSALPEGALKPQLLAEIAEQVMIDSRELLQLWQPASGGRKPYYKKNSGPPPQPQNF 460 Query: 461 GP-----------------------------------------SQRLMQSSLVKGKLSKK 479 P S S GK +K Sbjct: 461 RPEHPAPELDHGMPEFGDYPPMGLHDEPDYASSEPYFSQPPAYSPSPAAPSGKPGKFGRK 520 Query: 480 P----------------SLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFL 522 P + RE +L L+ P E + L+++L Sbjct: 521 PFPSGSAPRRMTGRILPASREDRVLRLLLTEPQSWDRLSTEEHHLLLALPAPHGPLFAWL 580 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 S E + + L A + V + + Sbjct: 581 ESQLHEHGPQSWAVLREGLRGHAHE-------------HHAVAQFAEVLEGVDYDWDETR 627 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + L R E E + E+ L++ Sbjct: 628 RILMQLQQLKRDSEIAELAARAPSEPAVLERLRELLAQSRAEK 670 >gi|332075403|gb|EGI85872.1| DNA primase [Streptococcus pneumoniae GA41301] Length = 586 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 259/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G FIE+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVPFIEAVQILGQRVGIEVEKPLYSEQKSASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + +L +RG+ ++ F +G AP R L + L + E Sbjct: 118 AAKFYHAILMTTTMGEEARNHLYQRGLTDEVLKHFWIGLAPPERNYLYQRLSDQYRE-ED 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL ++ D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 177 LLDSGLFYLS-DANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ + G++N V+S+GT Sbjct: 236 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRVGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 286 ALSREHVEHLKRLTKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 341 EYLQKNGPEDLVYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVKEKSIAA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 401 QNSYIHILADSLASFDYAQIEQIVNESRQVQRQNRMEGISRPTPIT----MPITKQLSAI 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D + E Q L+ L + Sbjct: 457 MRAEAHLLYRMMESP-LVLNDYRLREDFAFATPEFQVLYD-LLGQYGN------------ 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++++R E + ++ + + + + LL++ I+K Sbjct: 503 LPPEVLAEQTEEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDIDTALEELERLISQKRRME 586 >gi|293570225|ref|ZP_06681294.1| DNA primase [Enterococcus faecium E980] gi|291609632|gb|EFF38893.1| DNA primase [Enterococcus faecium E980] Length = 613 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 153/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 4 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 59 FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTVAVQNPESATGKL 118 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 FS E + +GL + + DRF R++FP+R+ +GQ I F GR L+ + Sbjct: 179 SFSNELLERSGLFV-THDDGRLSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 237 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + G V V Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 465 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613 >gi|37523652|ref|NP_927029.1| DNA primase [Gloeobacter violaceus PCC 7421] gi|35214657|dbj|BAC92024.1| DNA primase [Gloeobacter violaceus PCC 7421] Length = 638 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 162/639 (25%), Positives = 285/639 (44%), Gaps = 35/639 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I ++ + +++ + V + D+ CPFH++++PSF+ + K Y Sbjct: 6 LHPRTIDEVRAKADLVDVVSERVVLRKAGR-----DFKGLCPFHEDRSPSFYVSPGKQIY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118 CF+C GD F+ L +F E V LA GVP+ P + +K Q L Sbjct: 61 KCFACGASGDVFKFVMELDKSAFGEVVLELARRFGVPVQTLKPEQKAEYTRKLSKQQQLG 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176 ++E+A F+ ++L R YL E R + I F+LG+AP+ SL + + QK Sbjct: 121 EILELAAQFYSYALWGERGAAARQYLLEARALSEKTIRQFRLGFAPEGWQSLYTYLVDQK 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F + EAGL+I + YDRFR+RLI PI +G+VIAFGGR + E KYLNS Sbjct: 181 RFPASLVEEAGLIIPRSSGQGYYDRFRHRLIIPICDLKGKVIAFGGRAM-GDEQPKYLNS 239 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF+KG+ LY A + + + I+VEGY D ++L Q+G+ +VV+ Sbjct: 240 PETELFNKGQTLYALDQARESVGR----------TDGAIVVEGYFDAIALHQSGISHVVA 289 Query: 297 SLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLL 353 +LGT+L Q++ L + + R+VL FD D G++AA +AI +L + G ++ V L Sbjct: 290 TLGTSLRTDQIKQLLRYTESKRVVLNFDADAAGVQAAERAIAELRPLVVKSGVQLRIVAL 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD F+R + + KL E+ +D +R R + + ++ L ++ Sbjct: 350 PAGKDPDEFLRSHPPQEYLKLASEAPLWIDWQIERLFAGRDLSLAADFQQVSQGLVELLS 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + R +Y I +L Q + ++ R + R +S + Sbjct: 410 GLLSSMTRAHYIHLIAGQLSQGNGRLASQLEDELRRRIRTHRWGGG------DGKSKKKR 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKY 531 E L+ ++ ++ ++ L + + + ++LW + E Sbjct: 464 EPFPPACFQAEVQLIQIYLHFAEYREDIHRGLDEHDLEFSVLHHRQLWQKILQLREEIGE 523 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQ--VRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + R G EL ++L + + + + ++ Q +R+ Sbjct: 524 DDDVVVALRTMYAGDPELNQRLGQLLWLNEHNRIALMRPRMVIRAGLATLQLDRCERRYN 583 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 L++ +E E++ A A E+ ++++ + Sbjct: 584 YLNQLCDEAERRGAWEEADYFVEQRNAEYHRINDLKTHL 622 >gi|224823887|ref|ZP_03696996.1| DNA primase [Lutiella nitroferrum 2002] gi|224604342|gb|EEG10516.1| DNA primase [Lutiella nitroferrum 2002] Length = 587 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 178/626 (28%), Positives = 300/626 (47%), Gaps = 50/626 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+DFI LL + I +++ +YV + N + ACCPFH EK+PSF + SK FY Sbjct: 2 IPQDFIDQLLSRVDIVDVVDRYVPLKKAGQN-----FLACCPFHKEKSPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQT-DLI 118 +CF C G + F+ G SF+++++ LA G+P+P +P+ ++ + + L Sbjct: 57 HCFGCGAHGSAIGFVMEYQGLSFVDAIRLLAEGLGMPVPAERSANPQASREARERKVTLE 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L++ A ++ LK++ Y RG+ F LGYAP +L+ + Sbjct: 117 DLLQRAAAYYKQQLKSSPAA--IGYFKGRGLTGEIAARFGLGYAPGEWQNLQAIFTD--Y 172 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +EK++E+GL+I + YDRFR+R++FPIR+ RG +I FGGR L KGE KYLNSPE Sbjct: 173 QDEKLVESGLVI-AGDEGKRYDRFRDRVMFPIRNQRGGIIGFGGRVLGKGEP-KYLNSPE 230 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ LY + A +++ R +++VEGYMDV++L Q GV+ V++L Sbjct: 231 TPLFEKGRELYGLYEARQAIREKNR----------VLVVEGYMDVVALAQYGVEYAVATL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T +R L + + ++ CFDGD G +AA++A++ L L+ G +NF+ L + D Sbjct: 281 GTATTGEHVRKLLRHADQVYFCFDGDKAGQKAAWRALENSLPQLVDGKALNFLFLPQEHD 340 Query: 359 PDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDS+IR +G+ AFE+ + +SLPL L + T NTP+ +A+L +N I Sbjct: 341 PDSYIREFGREAFEECLEQQSLPLSVYLTRELTGRADMNTPEGKADLIRQAMPLLNQIAA 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L + + + + G + +K R S R + + +V+ + Sbjct: 401 PALALIIKKRLAELAGVDVDE-FDMLMGLKKPERKGRREYRLPNESNRYINTPIVRKQ-- 457 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YFLPEE 536 + L+ +P ++ + + ++ L E Sbjct: 458 ----------IKWLLMNPRWAEDVTLS-DSVALSDEL--ACFAMLAERVHEMPQEPNTAR 504 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + + F L+ + +Q A T + RQ +Q + ++ Sbjct: 505 LVESIRGTPFEGLVDSVLQQAMQDPDEFADTG---EEARQQFQDGNVKLLKLL----REA 557 Query: 597 EIEKQIAQVTAKGEAEKTAILISILH 622 E+E+ + +G + L+ L Sbjct: 558 ELERLKQKSRNEGLTPEETQLLRALL 583 >gi|332709461|ref|ZP_08429422.1| DNA primase [Lyngbya majuscula 3L] gi|332351720|gb|EGJ31299.1| DNA primase [Lyngbya majuscula 3L] Length = 652 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 160/661 (24%), Positives = 279/661 (42%), Gaps = 49/661 (7%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 MN P + I+ + I ++I ++V +R D+ CPFH+EKTPSF + Sbjct: 1 MNIPRLHPNTIEAVKERSDIVDVISEHVVLRKRGR-----DHVGLCPFHEEKTPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 SK YYCF C G+ + FL + SF + V LA VP+ + P+ ++ + Sbjct: 56 SKQLYYCFGCQAGGNAIKFLMEIGKHSFSDVVLDLAQRYQVPVQTLQPEQREQLQRQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH 172 Q L ++ +AT F+ H+L+ + ++ YL +RG+ I F+LGYAP S ++ + Sbjct: 116 QEQLYEILALATAFYQHALRQPQGQQALEYLRGQRGLSEETIITFELGYAPASWQTIYRY 175 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 L + K++E LI ++ YD FR+R++ PI ++G+VI FG R+L E K Sbjct: 176 LVEHKRKPVKLVEQAGLIKPRDNGGYYDGFRDRIMIPIHDTQGRVIGFGARSL-GDEQPK 234 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET LF K K L+ A N + K ++VEGY D ++L G+ Sbjct: 235 YLNSPETPLFDKSKTLFALDKARNSITKQ----------DQAVVVEGYFDAIALHATGIT 284 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA---IDLVLCHLIPGNRVN 349 N+V+SLGTA + Q+R L + + + + D ++ ++ Sbjct: 285 NIVASLGTAFSLDQVRQLSRYTESKQIVLNFDADAAGTTAAQRAIGEIANLAYQGLVQLR 344 Query: 350 FVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + L G+D D F++ + +L++ + +D + + D+ ++ Sbjct: 345 VLNLPDGKDADEFLKSAPDATEQYRQLLLNAPLWLDWQINQLLIGKDLQQADQFQQVAQA 404 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQ--------LFQKYITEHSGYGRYWKKNARHRDQ 459 + + ++D YY L Q + + T+ R K + R + Sbjct: 405 MVKLLKQLEDINQLTYYINYCAQILSQGQGKLVSLYIENFQTQLQKPLRAAFKKSPPRLK 464 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQK 517 K Q S+L GK EA LL ++ P Q L D+ + + + Sbjct: 465 KTKQQGNQDSNLPVGKERTLLERAEALLLRIYLHCPEYRQTIIDTLDQGDLLFSLSHHRF 524 Query: 518 LWSFLFSDFVEQKYF---LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 LW + F PE++ RL +R Q R++ E D+ Sbjct: 525 LWQQIIELQGIGTQFYTTTPEQLISRLQDRSL-----QFPREMTQVAHLFHLDETCTEDI 579 Query: 575 RQG--YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + QA A L + + +Q ++ + ++ E + ++ ++E Sbjct: 580 LRAPMVIQAAAASLEIVALEKHRRYCLEQWQKIDLSNDWQRKQYYWQECQEANRRLIELE 639 Query: 633 S 633 Sbjct: 640 K 640 >gi|325105391|ref|YP_004275045.1| DNA primase [Pedobacter saltans DSM 12145] gi|324974239|gb|ADY53223.1| DNA primase [Pedobacter saltans DSM 12145] Length = 646 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 160/654 (24%), Positives = 274/654 (41%), Gaps = 47/654 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ +L I ++G +V +R T CPFH EKTPSFH + +KG Y Sbjct: 2 IKKETVERILETARIEEVVGDFVHLKKRGT-----SMIGLCPFHGEKTPSFHVSPAKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 CF C GD L F+ + S+ E+++ LA + + V + + + + L Sbjct: 57 KCFGCGEGGDSLQFVMSHEKYSYPEALRYLANKYNIEVEEIEVSDEYKAEADKRESLYIT 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A FF L N + R Y ERG ++ F++GY+P+ SL + +G+ Sbjct: 117 TAYAAKFFADKLWNTDEGRSIGLSYFKERGFKEDILKKFEIGYSPEEWTSLYDSATAEGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 +E + E GL+I D + YDRFR R+IFPI + G++I FGGRTL + KY+NSP Sbjct: 177 KQEFLEETGLVIKNDKG-SVYDRFRTRVIFPIHNFTGRIIGFGGRTLKTDKKIPKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +++K K LY F A ++ +LVEGY DVLS+ QAGV+NVV+S Sbjct: 236 ESEIYYKSKVLYGLFHAKKAIR----------ERDNCLLVEGYADVLSVHQAGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q++L+ + + + + +DGD G++A+ + +D+ L G V VL G Sbjct: 286 SGTSLTTEQIKLIGRFTNNVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+I+ +G +AF+ + + + N P ++A + + I I D Sbjct: 343 DPDSYIQTFGASAFKTHVELNTKDFIFYKTEILLQDAANDPIKKAGVIRDVIESIAKIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 Y + LQ Q I+E + K Sbjct: 403 AIKASVYVRECSSLLQMEEQILISELNKIRLAKSKKEAPNQPGSNFPPPEFYEEGPPPDL 462 Query: 478 --------KKPSLREAALLLTLINHPAILQEQYQ------------ELADIRYDNNELQK 517 ++ +E ++ L+++ L L D+ + N L K Sbjct: 463 FDDNRQSIQEDLPQEKEMIRILLSYGHHLVNWDDITDTYIGPYIVMNLNDVTFTNAALDK 522 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + + + L ++ Q + L + W + + Sbjct: 523 ILKYYIQEVEKGTLPLEKDFLQHQDREISSMAISLLTSPYNLSENWYNMHNITVKNESDH 582 Query: 578 YQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + + + + E ++++ Q + L EV I Sbjct: 583 LKSTVMGAIFHLKKKKVLALMAEKQREMQQEQDEANLMILVKNYMELKEVEKYI 636 >gi|284040804|ref|YP_003390734.1| DNA primase [Spirosoma linguale DSM 74] gi|283820097|gb|ADB41935.1| DNA primase [Spirosoma linguale DSM 74] Length = 703 Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats. Identities = 159/719 (22%), Positives = 287/719 (39%), Gaps = 105/719 (14%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + ++ + I +I +V +R +N Y ACCPFH+EKTPSF+ N ++ Sbjct: 1 MRIPEETVERIRQSADILEVINDFVSLKKRGSN-----YIACCPFHNEKTPSFNVNPTRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y CF C GD + F+ + + E+++ LA G+ + P+ ++ + L+ Sbjct: 56 IYKCFGCGKAGDSVRFIMDIENIGYGEALRYLAKKYGIEIEEQEQTPEDLLRQNERESLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ A FF +LK + + Y ERG + I+ F+LGY D +L + ++ Sbjct: 116 IVLNFAKTFFQETLKTTDEGKSIGLSYFRERGFTNPTIDAFELGYTLDQWDALLKEGIRR 175 Query: 177 GFSEEKIIEAGLLIDGD----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-- 230 G+S + + +AGL++ + + +DRFR R++FPI + G+VIAFG R L ++ Sbjct: 176 GYSRDLLEKAGLILVKEGSAGGDSKVFDRFRGRVMFPIHNVSGRVIAFGARILKTDKNQP 235 Query: 231 ----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 KYLNSPET ++HK + LY + A ++ L EGY DV+SL Sbjct: 236 GGAAPKYLNSPETSVYHKSQVLYGIYQAKQAIR----------QEDVCYLTEGYTDVISL 285 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 QAG++NVV+S GT+LT Q+RL+ + +P + + +DGD G++AA + +D+VL + Sbjct: 286 HQAGIKNVVASSGTSLTTEQIRLISRFTPNVTILYDGDAAGIKAALRGLDMVLEEGL--- 342 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELE 405 + +LL GEDPDS++ G AF+ S +D R N + Sbjct: 343 NLRLLLLPDGEDPDSYVHKIGADAFKTYIREHSQDFIDFKASRWLTEAGDNPLKRAEGIS 402 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRD-----------RLQQLFQKYITEHSGYGRYWKKNA 454 + I D R SQ + + +L +K + ++ Sbjct: 403 DVCVSIT-KIPDALKRQTLSQRVAQVFHVSEQSVISEINRLLRKQHDQSKKDAERQQRTG 461 Query: 455 RHRDQKGPSQRLMQSSLVK------------------------------------GKLSK 478 +K S + M + Sbjct: 462 DPSARKATSSQAMPPGEPSLDDINSLLDGFAPELSEMDFPAEAVAPGKFTTDERTKGVRT 521 Query: 479 KPSLREAALLLTLINHP--------AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 S +E + LIN+ + Q EL +I + + + + Sbjct: 522 PLSYQEEECVRLLINYGVRELEPGITLCQYVLSELHEIEFQTAPYDLILTLFREAYSRGD 581 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRD-------------AGLWSATTEANIVDVRQG 577 ++ + ++ Q +E + + Sbjct: 582 ILTADDFLNHRSDASDRPGGAEIQNQAIHLTTPRYEISEGWLKHEIFVPSEEEVGILADA 641 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ 634 + + L + L ++ +++ + + +K EA++ + I+I + Sbjct: 642 AYRNI-LRIKKLLAEQRMATLQQLLRESGSKSPEEADQLLTEFMHFKRIDIEISSLLGT 699 >gi|116070448|ref|ZP_01467717.1| DNA primase [Synechococcus sp. BL107] gi|116065853|gb|EAU71610.1| DNA primase [Synechococcus sp. BL107] Length = 686 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 167/678 (24%), Positives = 293/678 (43%), Gaps = 70/678 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A+ +F L++ Y ++RG+ + F+LGYAPD L HL+Q Sbjct: 120 QRALALASGWFRTQLRSPAGHEALNYLTEQRGLSPAVQDAFELGYAPDQWDGLLNHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + + + AGL++ YDRFR+R+I PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLAPDLLEAAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRVTDSKRIVLNFDADGAGVRAANRAIGEVEQLSLQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ +R + D+ + L + Sbjct: 349 LPTGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLSRADQFQQAVSSLVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R S Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460 Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + EA LL ++ P A+++++ ++ + + LW+ + Sbjct: 461 QPGEISQRERSEADLLRLYLHCPRHRAVIRQELRQRELEDFAIQHHRHLWAAITELEETN 520 Query: 530 KYFLPEEIHQR----------------------LCERGFGELLK------QLDRQVRDAG 561 E R L L +L R Sbjct: 521 LGVGRLEAISRCDDAGDGLDDLDLPRLLTDQLLLENSALVSRLTPLLEPGELQRVSLAEP 580 Query: 562 LWSATTEANIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGE-AEKTA 615 L A +++ ++ ++ L +R + L + QI Q+T + + Sbjct: 581 LELLRGTAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQIQQITDPHDNTDMEM 640 Query: 616 ILISILHEVHIQIHQIES 633 + ++ +++ + + Sbjct: 641 RIQALFDDLNRDALRYQE 658 >gi|217969611|ref|YP_002354845.1| DNA primase [Thauera sp. MZ1T] gi|217506938|gb|ACK53949.1| DNA primase [Thauera sp. MZ1T] Length = 631 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 176/657 (26%), Positives = 274/657 (41%), Gaps = 65/657 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F+++LL + I ++I +Y+ + N Y+ACCPFH EK+ SF + SK FY Sbjct: 2 IPQSFVQELLSRVDIVDVIERYLPLKKSGAN-----YFACCPFHGEKSASFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 +CF C V G + FL G F+++++ LAA G+ +P + L + Sbjct: 57 HCFGCGVHGSAVGFLMEYSGLGFVDAIKELAAQVGLQVPDDGRSAAPVHDDPSERLYEAM 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 VA F+ LK + ++ YL RG+ F LGYAPD +L + + + Sbjct: 117 AVAARFYRDQLKPS--RQAIDYLKRRGLSGEVAARFGLGYAPDEWQALEKAF--PDYQAK 172 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + +AGL+ID + YDRFRNR+IFPI RG++IAFGGR L KGE KYLNSPET L Sbjct: 173 TLADAGLVIDNEQGRR-YDRFRNRIIFPIHDRRGRIIAFGGRVLDKGEP-KYLNSPETPL 230 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+ LY F A ++ + F ++VEGYMDV++L Q ++N V++LGTA Sbjct: 231 FEKGRELYGLFLAQKAIR----------DAGFAVVVEGYMDVVALAQFAIENAVATLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T + L + + RIV CFDGD G RAA++A++ L L + F+ L DPDS Sbjct: 281 TTPQHIHTLLRQTDRIVFCFDGDAAGRRAAWRALENALESLRDDATLAFLFLPAEHDPDS 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R G AF K + + PL L + + ++ + RA + I L+ Sbjct: 341 FVRAEGTEAFRKAALAATPLGSFLIQELSGRHPLDSAEGRAAFVHEAAPLVTRIAAPLLK 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-------------- 467 +A+ + + + P Sbjct: 401 LQVVKAVAESAGMTQGEVEYAFEQLAASAPRRRGASAPTPPRAPAASIASTEADAPFFDD 460 Query: 468 ------------QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 Q+ + +KP LL ++ HP L + E Sbjct: 461 APPPARSAPPRGQAPRPRAGGRRKPPSTAGTLLRLVMQHPTWAARMPVGLVPDD--SPEG 518 Query: 516 QKLWSFLFSDFVEQKYFL---PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 L + + + +R E E L ++ ++ +A A E Sbjct: 519 LALI-AIIDLCSLGEPIPSGGLGALIERFRETPHAETLSRVAAELVEAEFDEAVVETLFE 577 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 D R + +EI + + +G + L + Sbjct: 578 DA-----------LRKLQIDGVGKEITALLQRDREQGLDAAGRHRLGELLLEKRNLA 623 >gi|220927993|ref|YP_002504902.1| DNA primase [Clostridium cellulolyticum H10] gi|219998321|gb|ACL74922.1| DNA primase [Clostridium cellulolyticum H10] Length = 604 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 178/619 (28%), Positives = 298/619 (48%), Gaps = 36/619 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P D I+++ + I +I +YV +++ N ++ CPFH+EKT SF K + Sbjct: 5 FPDDLIEEIRVSNDIVGIISEYVKLEKKGKN-----FFGKCPFHNEKTASFSVEPVKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 +CF C G+ + F+ ++ F ++++ LA A + +P + + ++K ++ +L+++ Sbjct: 60 HCFGCGKGGNVIHFIMSIENLEFPDALRFLADRAKILIPDMIEGNRNDEKAGLKRELLQI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF +L N ++K + YL R I + + F LGYA D +L +HL+ KGFS+ Sbjct: 120 NLEAARFFRDNLNNDKNKLPNSYLINRKIQKNTVAKFGLGYAEDRFDTLYKHLKAKGFSD 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I +GL+I + S YDRFR R++FPI RG VIAFGGR L + KY+NSPET Sbjct: 180 TSIKNSGLVIYKEESGNIYDRFRGRIMFPIFDIRGNVIAFGGRVLDSSQP-KYMNSPETE 238 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HKGK+LY A N + +IL EGYMDV+SL Q+G+ N V+ LGT Sbjct: 239 VYHKGKHLYALNFAKNTCSR------------RLILAEGYMDVISLHQSGILNSVAPLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q RLL K + IVL FD D G AA++++DL G V + + G+DPD Sbjct: 287 ALTENQGRLLKKYTEEIVLSFDSDSAGRAAAFRSLDL---LNEIGCNVKVLTIPSGKDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FI+ YG F++L+ S L+D + +T + + ++ I + Sbjct: 344 EFIKAYGVAEFKRLVDRSESLLDFKLGSLKNDIDTSTNEGKVRFLDKAVLILDKIDNNVE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + + L Q +E + R K + K S+ ++ S V ++ Sbjct: 404 KELYVKKLSEELGVSTQSIFSEMAKQQRNSVIKVRQAASNKNFSRNQIRKSTVVKNQEER 463 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + LL T+ ++ ++D++E++K + F + L EI Sbjct: 464 LVRLQLMLLATICLDNSVYFSIKGSFDWDKFDSDEIKKAFKFAVERIESKAGILTGEILN 523 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 +L G E + + +++ D ++ + F L R+ E IE Sbjct: 524 KLSP-GMAESFANIVQ-----------SQSIFEDNKKAALDIIRNIDLFGLEERKNEIIE 571 Query: 600 KQIAQVTAKGEAEKTAILI 618 + +G+ E + Sbjct: 572 LKKRSDLTEGDVELLNREL 590 >gi|90961887|ref|YP_535803.1| DNA primase [Lactobacillus salivarius UCC118] gi|90821081|gb|ABD99720.1| DNA primase [Lactobacillus salivarius UCC118] Length = 617 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 150/640 (23%), Positives = 296/640 (46%), Gaps = 39/640 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I +L ++ I ++I QYV + N ++ CPFH EKTPSF N+ K + Sbjct: 5 IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CFSCH G+ F+ L G SF ESVQR+A +A + + + + + + + +L Sbjct: 60 HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + T +HH L N + YL +RGI+ IE F++G+AP++ QK + Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENNILEAFFKEQKLYD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 + + ++GL I+ ++ +RF R++FPIR + GQ IA+ GR L + ++ KYLNSPE Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L+NF A +++ IL EG+MDV++ ++G++N ++S+ Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGIKNGIASM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ L +++ +V+C+DGD+ G A +A++++ V + + D Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346 Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD F + YG F +L + ++ ++++ N + + E + I ++D Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDKNLNNENNQLEYIRDILQEIAKVRD 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + R + ++ ++ + +Q +Q++ ++ + K + Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLKQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466 Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + K E LL +++ + + D + + Q +++ + F + Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDIHDEYE 525 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + E G +++ L+ + Q L+L L Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++++ ++ + + + K L L + + +S Sbjct: 575 KIKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614 >gi|78184868|ref|YP_377303.1| DNA primase [Synechococcus sp. CC9902] gi|78169162|gb|ABB26259.1| DNA primase [Synechococcus sp. CC9902] Length = 686 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 168/678 (24%), Positives = 294/678 (43%), Gaps = 70/678 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA +P+ VD +++ + + L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRQSFSDVVLDLARRYQLPIETVDGPQQERLRQQLSRRDKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R + +A+ +F L++ + Y ++RG+ + F+LGYAPD L +HL+Q Sbjct: 120 QRALALASGWFRSQLRSPAGQEALNYLTEQRGLSPAVQDAFELGYAPDQWDGLLKHLQQV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G + E + AGL++ YDRFR+R+I PI +G+VI FGGR+L E KYLN Sbjct: 180 EGLAPELLESAGLVVPRKGGNGFYDRFRHRVIVPIHDRQGRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K R ++VEGY DV++L AG+ N V Sbjct: 239 SPETEVFEKGKHLFGLDKASNAIRKDDRA----------VVVEGYFDVIALHAAGITNAV 288 Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + S RIVL FD D G+RAA +AI V + G + + Sbjct: 289 ASLGTALSSQQITQLCRVTDSKRIVLNFDADGAGVRAANRAIGEVEQLSLQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ ++ +D ++ +R + D+ + L + Sbjct: 349 LPTGKDPDEFLKDHGAGDYRALLDQAPLWLDWQIEQALADRDLSRADQFQQAVSSLVALL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R S Sbjct: 409 GKLPQSAVRTHYLQRVAERLSGGQGRLALQLEEDLRQQVKGQRWHG--------RSSRHE 460 Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + EA LL ++ P A+++++ ++ + + LW+ + Sbjct: 461 QPGEISQRERSEADLLRLYLHCPRHRAVIRQELRQRELEDFAIQHHRHLWAAITELEETN 520 Query: 530 KYFLPEEIHQR----------------------LCERGFGELLK------QLDRQVRDAG 561 E R L L +L R Sbjct: 521 LGVGRLEAISRRDDAGDGLDDLDLPRLLTDQLLLENSALVSRLTPLLEPGELQRVSLAEP 580 Query: 562 LWSATTEANIVDVRQGYQQALALY-----KRFRLLSRQKEEIEKQIAQVTAKGE-AEKTA 615 L A +++ ++ ++ L +R + L + QI Q T + + Sbjct: 581 LELLRGTAALLERQKSLKRCRHLLEAWGGQRLQTLESCIAVLIDQIQQTTEPHDTTDMEM 640 Query: 616 ILISILHEVHIQIHQIES 633 + ++ +++ + + Sbjct: 641 RIQALFDDLNRDALRYQE 658 >gi|227890914|ref|ZP_04008719.1| DNA primase [Lactobacillus salivarius ATCC 11741] gi|227867323|gb|EEJ74744.1| DNA primase [Lactobacillus salivarius ATCC 11741] Length = 617 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 153/640 (23%), Positives = 297/640 (46%), Gaps = 39/640 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I +L ++ I ++I QYV + N ++ CPFH EKTPSF N+ K + Sbjct: 5 IPEATIDELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CFSCH G+ F+ L G SF ESVQR+A +A + + + + + + + +L Sbjct: 60 HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + T +HH L N + YL +RGI+ IE F++G+AP++ QK + Sbjct: 120 YKETTKLYHHILVNTVLGEPALEYLHKRGINDDLIEEFEIGFAPENDILEAFFKEQKLYD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 + + ++GL I+ ++ +RF R++FPIR + GQ IA+ GR L + ++ KYLNSPE Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L+NF A +++ IL EG+MDV++ ++GV+N ++S+ Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGVKNGIASM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ L +++ +V+C+DGD+ G A +A++++ V + + D Sbjct: 289 GTSLTDEQIYALDRVTSHLVICYDGDNAGQNATKRALEIIEPTGKFSLEV--IKIPEKLD 346 Query: 359 PDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD F + YG F +L + ++ ++R+ N +++ E + I ++D Sbjct: 347 PDEFTKKYGSEKFVELARNDRKSPLEFYLSYYEQDRNLNNENDQLEYIRDILQEIAKVRD 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + R + ++ ++ + +Q +Q++ ++ + K + Sbjct: 407 PLEQDLYLNRLAQRFNVAKENLDSQLRQIRERIFAQRAEKQEEQSYQAQQIPRTVIQKNE 466 Query: 476 LS--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + K E LL +++ + + D + + Q +++ + F + Sbjct: 467 VQHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYE 525 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + E G +++ L+ + Q L+L L Sbjct: 526 VADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLED 574 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + E+++ ++ + + + K L L + + +S Sbjct: 575 KIEKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 614 >gi|67924476|ref|ZP_00517899.1| DNA primase [Crocosphaera watsonii WH 8501] gi|67853673|gb|EAM49009.1| DNA primase [Crocosphaera watsonii WH 8501] Length = 637 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 165/648 (25%), Positives = 288/648 (44%), Gaps = 39/648 (6%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 MN+P D I+++ I I +++ YV +R N Y CPFH EKTPSF N Sbjct: 1 MNFPRLHPDTIEEVKEKIDIYDIVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 SK YYCF C G+ + FL + SF + V LA VPL ++P+ ++ + Sbjct: 56 SKQMYYCFGCGAAGNGIKFLMEIGQQSFSQVVLELANRYQVPLKTLEPEKRQEVQKELSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ V ++FF H+L+ + Y +++R + I+ F LGYAP +L + Sbjct: 116 KEQLYEIVAVTSNFFEHALRETLGENALNYLIEKRKLQPETIQKFNLGYAPSGWETLYRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QK + + EAGL+ YD FR+RL+ PI+ +G+VIAFGGR+L + Sbjct: 176 LVEQKRYPIALVEEAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRVIAFGGRSL-TDDEP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+KGK L+ A + ++ S +I+VEGY D ++L AG+ Sbjct: 235 KYLNSPETPLFNKGKTLFALDQAKSSIR----------SFDKVIVVEGYFDAIALHSAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV- 348 N V+SLGTA +E QL+ L + S ++ FD D G++A +AI + + G Sbjct: 285 TNTVASLGTAFSESQLKQLLRYSDSKGVIFNFDADKAGIKATERAIKEIESLIYSGQVNL 344 Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + G+D D FI + +++LI ++ ++ ++ ++ D ++ Sbjct: 345 KILNIPDGKDADEFINSHDNGSEQYQELIEKAPLWLNWKIEQILMEKNLKQADNFEQVAQ 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + +N + D R YY + L Q + +T + + + + + + Sbjct: 405 GMVKLLNQLSDSNQRSYYISYCAEILAQGDARLLTLYLKNLQTQLSKPLTKLSQKNTTKT 464 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524 L + E LL I++P QE + +L D + + +E + +W L Sbjct: 465 FIK-LENTAENNLLKEAETILLKIYIHYPEHRQEIFDKLEDKNLIFSLSEHRIIWQKLLD 523 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E L ++ + L ++ +V + + A + Sbjct: 524 IDDEYDQKLVSKLEADIAN------LSEVSEKVNKLLNFREIEQYEDSSRLSLIIDAALI 577 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L + EK+ + + + ++ +I Q++ Sbjct: 578 SLEKVNLEKYCNYCEKKYKTINPEEDPVNYQYYLNEYISSRQKILQLQ 625 >gi|209522727|ref|ZP_03271285.1| DNA primase [Arthrospira maxima CS-328] gi|209496776|gb|EDZ97073.1| DNA primase [Arthrospira maxima CS-328] Length = 644 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 159/647 (24%), Positives = 283/647 (43%), Gaps = 33/647 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I ++I + V RR D+ CPFH+EK+PSF + S+ Sbjct: 5 RIHSDTIQEVKDRSDIYDIISEKVVLKRRGK-----DFVGLCPFHEEKSPSFTVSPSRQM 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C G+ + FL L SF + V LA VP+ P+ ++ + + L Sbjct: 60 YYCFGCGAAGNGIKFLMELDKSSFADVVLDLARRYNVPVKTESPEQHQEFQKTLSLREKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ +AT F+ H+L+ + + YL R + I+ F+LGYAP ++ + + Q Sbjct: 120 YEILAIATSFYQHALRQPQGEAALEYLKFSRRLGEETIQEFQLGYAPAGWETIYGYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K F E + +AGL++ YDRFR+RLI PI +G+VI FGGR+L E KYLN Sbjct: 180 KHFPVELVEKAGLIVPRKAGNGYYDRFRDRLIIPIYDIQGRVIGFGGRSL-GDEQPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KG+ L+ A + + ++VEGY D ++L AG+ VV Sbjct: 239 SPETELFDKGRTLFCLDRAKKAI----------SQQDMAVVVEGYFDAIALHAAGINYVV 288 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 +SLGTAL+ Q+RLL + + +I+L FD D G +A +AI ++ + + Sbjct: 289 ASLGTALSINQIRLLLRYTESKQIILNFDADAAGTKATERAIGEIETLAYRGEVNLRILN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+D D ++ + + ++ L+ +S ++ + +S E + + + Sbjct: 349 LPNGKDADEYLYIHTRHDYQDLLEKSPYFLEWQIHQIVGGKSIENVAESQRIATAMVELL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 ++D R Y Q+ + L Q + I + R ++Q+ + +S L+ Sbjct: 409 RKVQDLNQRTAYIQSCAEILSQGQSRLIPMLADSLRKQINKPLVQNQQNKASDSRKSDLI 468 Query: 473 KGKLSKKP--SLREAALLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528 + E LL ++ P QE + L ++ + + LW + + Sbjct: 469 ISAQRDRTLLEKAEGLLLRIYLHCPEYRQEIIKALEAENLEFSLTNHRFLWIKISEIELS 528 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + P E + + ++ ++ + E I D+ + A Sbjct: 529 LQEQKPREDIDLISQ--LQNFDREHSSEISEVSHLFYLNEKTINDIERPSIGIRAATASL 586 Query: 589 RLLSRQKEEIE--KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + +K ++ + + K E L+ ++ ++E Sbjct: 587 EWVLCEKRYLQYLDKWKKTDIKLNLELAEYYQQQLYAEQKRMKELEQ 633 >gi|82703178|ref|YP_412744.1| DNA primase [Nitrosospira multiformis ATCC 25196] gi|82411243|gb|ABB75352.1| DNA primase [Nitrosospira multiformis ATCC 25196] Length = 592 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 177/641 (27%), Positives = 293/641 (45%), Gaps = 72/641 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI++LL I ++I + V R N Y ACCPFH EKTPSF + K FY Sbjct: 2 ISQSFIQELLDRTDIVDVIERDVPLRRAGAN-----YSACCPFHSEKTPSFTVSPIKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTD--- 116 +CF C G+ + F+ G F+E+V LAA G+ +P + + + Sbjct: 57 HCFGCGAHGNAIGFVMEYDGMHFVEAVSELAARIGLQVPAQQAETGSGSQSDSARVKPNG 116 Query: 117 -------LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 L+ +++A F+ LK K YL +RG+ F +GYAP +L Sbjct: 117 TEYSPGALLEAMKIAARFYREQLK--LSKNAIDYLKQRGLTGATAARFGIGYAPAGWQNL 174 Query: 170 REHLRQKGFS--EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + + + +++AGL+++GD YDRFR+R++FPI + +G ++ FGGR L K Sbjct: 175 HTSFPGQPDNAQKRLLVQAGLMVEGDGG-KCYDRFRDRIMFPIVNLKGMIVGFGGRVLEK 233 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF KG+ LYN FGA ++ + +I+VEGYMDV++L Sbjct: 234 GEP-KYLNSPETPLFQKGRELYNLFGARRAIR----------EAGKVIVVEGYMDVVALS 282 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G++ V++LGTA T Y ++ L + + IV CFD D G +AA++A++ L L G Sbjct: 283 QHGIEYAVATLGTATTPYHIQKLLRQTDNIVFCFDADSAGKKAAWRALEDSLAQLADGKS 342 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L GEDPDS+IR +G++AFEKL+ ++LPL L++ + + + RA+L Sbjct: 343 IGFLFLPEGEDPDSYIRNHGRSAFEKLLEQTLPLSVFLFRELSARTDLKSSEGRAKLVQD 402 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + L + + + + L ++ + R R + + Sbjct: 403 AKPLLARVAAPGLALMLVKRLAE-ISGLSERELEGILKIRRVTAFPVREKPSRPKPVSPY 461 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + LL L+ HPA +Q+ +EL + + + L Sbjct: 462 E-----------------WLLQILLYHPAYIQKLDRELLAYDQEYEKEVAALAALVEFID 504 Query: 528 EQKYFLPEEIH----QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + +L+Q + +D+ + A+A Sbjct: 505 VHPHMGEGTLIPLMTVHFRASPYRAILEQAASKTLGWD--------GELDLEAEFAGAMA 556 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 R + R ++++A + K + T L + Sbjct: 557 ---RLHEMKR-----KQRMAVLHNKSLSALTPEEREELQRM 589 >gi|326773169|ref|ZP_08232452.1| DNA primase [Actinomyces viscosus C505] gi|326636399|gb|EGE37302.1| DNA primase [Actinomyces viscosus C505] Length = 671 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 144/684 (21%), Positives = 264/684 (38%), Gaps = 72/684 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I+ + + +++ ++V G CPFHDE+TPSFH G++ Sbjct: 5 IRREDIEAVRERARLEDVVSEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119 +CF C GD ++F+ + F E+V+ LA GV L + ++ + L+ Sbjct: 61 HCFGCGEGGDVITFIEKIHHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F L + +L RG D HA F +GYAP +L +LR G++ Sbjct: 121 ANRLAEAWFREQLATPEAQPGRDFLTSRGFDRHAAAHFGVGYAPAGWDNLARYLRSSGYT 180 Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 E +++++GL G + YDRFR RLI+PIR G + FG R L + + KYLN+P Sbjct: 181 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTP 240 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK + LY A + +S R I++VEGY DV++ +GV V++ Sbjct: 241 ETPVFHKSQVLYGLDLAKREVARSQR----------IVVVEGYTDVMAAHLSGVTTAVAT 290 Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337 GTA +R++ + ++ FDGD G +AA +A Sbjct: 291 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 350 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 + + G DP G + +L+ +PL + + + + +T Sbjct: 351 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDSGIPRLLSRRVPLFEFVIRTSLSHLDLDT 407 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + R + I+D+ L+ Y++ + L + R + + R Sbjct: 408 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHAAVQAASRRGAQPSTAR 467 Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511 + P+ ++ E L +I P + EL + Sbjct: 468 GGQWPADETAGPDAAAPVRGLPPVTDPVEQLEREALAVIIQFPVAAHQAGADELGADSFG 527 Query: 512 NNELQKLWSFLFSDFV-------------------EQKYFLPEEIHQRLCERGFGELLKQ 552 + ++ + + E + Q++ + G + Sbjct: 528 QLTHRAVYEAVAAAGGTGEVPGLVQQAVAAGMGEQEAQRRATLRWLQQVRDGAIGLVEAA 587 Query: 553 L-DRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 + + V L + VD + Y + + ++R+ E+ + +++ + Sbjct: 588 ITEVAVAPLPLPTIRGRGTEVDASGLERYAKGVLDSLAVMGINRRLVEMRSRHRRMSPQ- 646 Query: 610 EAEKTAILISILHEVHIQIHQIES 633 E L S + + + QI Sbjct: 647 -EEGYRELFSQIAALEQRRMQIRQ 669 >gi|307701758|ref|ZP_07638772.1| DNA primase [Mobiluncus mulieris FB024-16] gi|307613016|gb|EFN92271.1| DNA primase [Mobiluncus mulieris FB024-16] Length = 688 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 150/705 (21%), Positives = 255/705 (36%), Gaps = 99/705 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + IPI ++G YV R N CPFHDEKTPSFH Sbjct: 4 KIDPDDIQKVREAIPIEQIVGDYVTLQRGGVN----SMKGLCPFHDEKTPSFHVTLGANL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 ++CF C GD + F+ + G +F+E+++ LA AG+ L V+ + + L Sbjct: 60 WHCFGCGEGGDLIDFVQRIEGLAFLETIEFLANKAGIVLHYVEGGEAGSTRVEPGTRQRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + VA DFF L + + +++ R S F +GYAP + +L +LR G Sbjct: 120 LECNRVAQDFFTAQLLSPEAQDARDFVEGRAFTSEDAARFGMGYAPKAWGNLLGYLRDSG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLN 235 F++ +I GL S YD FR+R+ +PIR + G V+ FG R L + KY+N Sbjct: 180 FTDAEITTVGLAK--MGSRGLYDVFRDRVTWPIRDTTGAVLGFGARRLDDSDPENPKYIN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +PE+ ++HK LY A + + R ++VEGY DV++ +GV V Sbjct: 238 TPESPIYHKSSVLYGLDLARKTIGEQRR----------CVIVEGYTDVMAAHLSGVTCAV 287 Query: 296 SSLGTALTEYQLRLLW--------------------KLSPRIVLCFDGDDPGLRAAYKAI 335 ++ GTA T R++ ++ FDGD G +AA KA Sbjct: 288 ATCGTAFTGEHARIVRRLIGRPADGASSLRMPDGSAPRGGEVIFTFDGDAAGQKAALKAF 347 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + G DP G A L+ PL + + K Sbjct: 348 RTDQDFAA---QSFVAVAGEGLDPCDLRMRRGPGAVRDLVDSRRPLFEFVLKTIIGGFDL 404 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + R I+D+ LR Y + L ++ + G++ + ++ Sbjct: 405 DNSEGRVAALRAAAPIAAEIRDRALRQEYVSRLAGWLGVNSREAWETVNAAGQWLRSRSQ 464 Query: 456 HRDQKGPSQR-----------------------------------LMQSSLVKGKLSKKP 480 G S+R + L G + Sbjct: 465 EARGAGLSRRSGGSNGYGGGSVGGGFMSREGNPGGTGNAPALLPVMPPVRLDPGVDTDPV 524 Query: 481 SLREAALLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLF-------------SDF 526 E L+ ++ PA+ E + L+ + L+ ++ + Sbjct: 525 WRLERDALVAALHFPALTGETHFDLLSPQGFTQPTLRAIFEVIMAAGGVAEYARLQTEAA 584 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 P R + L V D + D + + Sbjct: 585 ASGTSDPPRAALNRWAAAVKSQAGSALGGVVTDLATRPVPVRS--EDEAAPWIHEVMDAL 642 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L+R+ + ++ ++ A E+ + + L E+ Q+ + Sbjct: 643 ERLYLNREMAGLRAKLNRLDAG---EEKNAVFAQLMELETQVRAL 684 >gi|167753250|ref|ZP_02425377.1| hypothetical protein ALIPUT_01522 [Alistipes putredinis DSM 17216] gi|167659181|gb|EDS03311.1| hypothetical protein ALIPUT_01522 [Alistipes putredinis DSM 17216] Length = 658 Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats. Identities = 157/665 (23%), Positives = 281/665 (42%), Gaps = 63/665 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I + I ++IG+YV R+ N Y ACCPFH+EKTPSF + SKG Y Sbjct: 2 IDRETIDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ ++FL ++ E+++ +A G+ + P+ + + + + Sbjct: 57 KCFGCGKGGNAVTFLMEHENMTYPEALKAVAKRYGIEVREKEMTPEEVARNDNRESMFVV 116 Query: 121 IEVATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 A ++F + L + + + Y+ +RG I+ F LG+ P + G Sbjct: 117 NSWAAEYFSNYLLHETEGMSVGMTYFRQKRGFSDATIKKFGLGFCPARGDRMSWAALAAG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236 + EE ++ GL I D+ + +DRFR R++FP+ + G+V+AFGGRTL +SV KY NS Sbjct: 177 YKEEFLVSTGLSIKRDDG-SLFDRFRERVMFPVHNISGRVVAFGGRTLRTDKSVAKYQNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++ K + LY F A + F I+VEGY DV+S+ QAGV+NVV+ Sbjct: 236 PESEIYSKKRELYGLFFAKKAI----------QQYDFAIMVEGYTDVISMHQAGVENVVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RLL + + I + +DGD G+ A+ + ID++L G V VLL Sbjct: 286 SSGTSLTTEQIRLLGRFTRNITVIYDGDSAGIHASLRGIDMILRE---GMNVRVVLLPPE 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + ++ I + + + P ++A L + I I Sbjct: 343 DDPDSFARTHTAAEVQEYIRANEEDFLTFKAKLLLKDAAGDPIKKAALINDMVQSIVQIP 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW----------KKNARHRDQKGPSQRL 466 D R Y + + I E ++ + + +QR Sbjct: 403 DPIQRSVYIKECARIMDIDENLLIAEVGRKRMASTGDREAEEFVRRQSARFRAEQTAQRP 462 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-------ELADIRYDNNELQ--- 516 + E L L+ + + + +A++ + + Sbjct: 463 ETVFAGQVTGGSSAEALERELTRYLLKYGHCSFDFKEGRNVVQYNVAEVIFGELDADGLE 522 Query: 517 ---KLWSFLFSDFVE-------QKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWS 564 ++++ + + E + L + + LW Sbjct: 523 FQNRVFNEILRVYREQWCALGLGVEVPIHHFINHSDPEVCNVSVDILTSEDHYVPSELWR 582 Query: 565 ATT---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 E++ + G +A+ LY + +++ R E+ +++ + + ++ L Sbjct: 583 RKEVHVESDAEMLAVGVPKAVTLY-KSKVIERMSRELREKLQDENLTDD--EMQDIMQRL 639 Query: 622 HEVHI 626 ++ Sbjct: 640 SNLNR 644 >gi|293379527|ref|ZP_06625669.1| DNA primase [Enterococcus faecium PC4.1] gi|292641836|gb|EFF60004.1| DNA primase [Enterococcus faecium PC4.1] Length = 613 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 4 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 59 FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTLAVQNPESATGKL 118 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 FS E + +GL + + DRF R++FP+R+ +GQ I F GR L+ + Sbjct: 179 SFSNELLERSGLFV-AHDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 237 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + ++L EG+MDV++ QAG+ Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVLLFEGFMDVIAAWQAGI 287 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + G V V Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + + + + R ++N + + +Q Q + Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFRVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 465 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613 >gi|282878196|ref|ZP_06286992.1| DNA primase [Prevotella buccalis ATCC 35310] gi|281299614|gb|EFA91987.1| DNA primase [Prevotella buccalis ATCC 35310] Length = 659 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 149/675 (22%), Positives = 278/675 (41%), Gaps = 67/675 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I +++ ++V + N Y CPFH+EKTPSF + ++G Sbjct: 2 IDRATVERIKDTANIVDVVSEFVTLRKSGAN-----YKGLCPFHNEKTPSFIVSPARGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ + F+ ++ E+++ LA + + + +++ + + + Sbjct: 57 HCFGCGKGGNAIGFIMEHEQMNYPEALRWLARKYHIEIHEREMTDEERREQSERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E +F L N D + Y RG I F+LGY R L KG+ Sbjct: 117 NEWTAGYFSDLLHNHPDGQAIGMQYFRSRGFRDDIIRKFQLGYDLPDRTRLASTAIGKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 EE +++ G+ + DRF R+IFP G+V+ FGGR L KG + KY+N Sbjct: 177 QEEFLLKTGICYKTERGD-LIDRFSGRVIFPWIGLNGKVVGFGGRVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP + ++ K + LY + A + K ++ +VEGY DV+S+ Q GV+NVV Sbjct: 236 SPASEIYQKDRELYGIYQAKKAIAK----------EDWVYMVEGYTDVISMHQCGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ +L + + I L +DGD G+ AA++ +D++L G V +LL Sbjct: 286 ANSGTALSMHQIHILHRFTSNITLLYDGDAAGIHAAFRGMDMLLSE---GMNVKILLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F+ I + + + +K + + P +R+E + + I + Sbjct: 343 GDDPDSFARKHSADDFKAYIDKHQ-VDFIQFKTDMLVSNVADPFKRSEGINSIISSIAVV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQRLMQSSL 471 +Q LR Y Q R+ Q I + Y R + + + + Sbjct: 402 PNQILRDTYVQDCARRIGMSEQTLINTMNRYIRENRGARTTEQQRTAMQAAQSVPVSHPT 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPA-----------------ILQEQYQEL---ADIRYD 511 K + S E L+ +I + + + ++ Sbjct: 462 PSAKPMAQASKVELMLIQLVIRKGEQLIYEGVEDDNHNVVNFTVAQYIDYILNGDQLQLG 521 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV------------RD 559 N +++ S S E+ + + + +L +L Sbjct: 522 NELYRRILSEAVSHSGEEGFVAEQYFVHH-DDIEISKLASRLSMDAYQVMETQKPASETK 580 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 D+R + Y R + ++ +++ ++IA+ +AE+ L+ Sbjct: 581 YVDEEQLAREAQEDLRNHTIHLVKDY-RMDYVEQRLKDLMREIAEA--SNDAERMQQLML 637 Query: 620 ILHEVHIQIHQIESQ 634 ++H + + Q Sbjct: 638 EYKDMHQIRNALAKQ 652 >gi|294139650|ref|YP_003555628.1| DNA primase [Shewanella violacea DSS12] gi|293326119|dbj|BAJ00850.1| DNA primase [Shewanella violacea DSS12] Length = 575 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 173/628 (27%), Positives = 295/628 (46%), Gaps = 56/628 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I I + I V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARIDIVDQIDAKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P +K+++ + DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFIDAIEELAGQLGLEVPREQGTGKKRDEGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ F L+ +DK+ YL+ RG+ I F +G+AP+ L RQ Sbjct: 116 LMEEASRHFQSQLRQDKDKQKVLDYLEHRGLSEKVIADFNIGFAPEGWDGLLSRYRQSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++K++ AG++I+ D+ YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 SQDKLLTAGMVIENDSGRR-YDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + R +++VEGYMDV++L Q V V+SL Sbjct: 234 TPIFHKGYELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q +LL + + ++ C+DGD G+ AA++A++ L L PGN+V F+ L +GED Sbjct: 284 GTATTAEQFQLLLRSAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK AFE I ++ L + L++ + + L + I ++D Sbjct: 344 PDTMVRQVGKEAFESQIDDAKALPEFLFETLAKRHGADKGT----LAKQAISLIEKVQDT 399 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L + + + +++ KG L Sbjct: 400 VLQSLLLENLAYKLGMNGADELRRKLGFSSKKQGHTLQNKALKGRGTPL----------- 448 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP L + L+ + + ++ Sbjct: 449 -------RLAIALLVQHP--------MLGEGLPVQPALKHIKMAGVDLLIHLLDITRVQV 493 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E + + L + +++Q +++ L ++ + + ++ +E Sbjct: 494 KN---SAQLLEQYRDAPQLSTLKKLTRWEHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVH 625 + + Q K E + + LI+++ ++ Sbjct: 550 L--SLKQNHTKEERIQLSKLITVIQGLN 575 >gi|269469020|gb|EEZ80584.1| DNA primase [uncultured SUP05 cluster bacterium] Length = 611 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 165/629 (26%), Positives = 279/629 (44%), Gaps = 38/629 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 DFI DL + I +LI + V + DY ACCPFH+EKTPSF K +Y Sbjct: 4 INNDFINDLSNQVDIVDLINRRVPLKKAGK-----DYKACCPFHNEKTPSFTVVADKQYY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ + F+ +FIE+V+ +A +GV + V D + L++ Sbjct: 59 HCFGCGENGNAIDFVMKFDHLNFIEAVEVVAGESGVSV-VYDQNARPVDPKMKRYRDLMQ 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F+ LK + K+ + RG+ + F LG+AP SL +H + + Sbjct: 118 EVSEFYQSQLKKSPAKKKVVTYAKNRGLTGEIAKRFDLGFAPPGWSSLFDHFKHNLEVVK 177 Query: 182 KIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + E GLL+ + YDRFR+RL+FPI +++G +IAFGGR LS+ + KYLNSPET Sbjct: 178 DLEEMGLLVAKKEKKGEYYDRFRDRLMFPIHNAKGDIIAFGGRVLSEEDKPKYLNSPETP 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHK + LY A + + S +I++VEGYMDV++L Q+G+ V++LGT Sbjct: 238 IFHKSRELYGLHHARKHSR----------SIDYILVVEGYMDVVALHQSGITCTVATLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T L+ L + + I+ CFDGD G AA+KA+ + L + G V F+ L GEDPD Sbjct: 288 ATTPEHLQTLSRTTDTIIFCFDGDRAGRAAAWKALQIALPVIKSGLIVKFLFLPDGEDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + ++ AFE I +S PL L+ F+T + + + I ++ Sbjct: 348 TLVKKESSKAFEARIEKSHPLSKFLFDHIKVEVDFDTIEGKTLFLEKVSILIQQVEYDTY 407 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + + Q ++ S K + G + KP Sbjct: 408 QQQLIEGVAQEVGQSVEQVKRVLSQQKLPPLKPSTPAPIVGEEMPVPDFPDFPDFSLSKP 467 Query: 481 SLRE--------AALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + ++ L+N+P++ + + D++ + + ++ L + Sbjct: 468 IVVKNNNAKGLMSKMITLLLNYPSLSDGTVEVRIRDLKKMDKK----FAVLLELTRSSQM 523 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E E + R L + + + + AL + ++ Sbjct: 524 IEQE---NNFQEELLKPFKNKTTTYNRLGQLCIMEPHLSEMQAKDEFLAALDVSEQ---- 576 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISI 620 ++ + + IA E +K I Sbjct: 577 QQKNTQNKASIATANTIEERKKLMESIQK 605 >gi|210620869|ref|ZP_03292286.1| hypothetical protein CLOHIR_00229 [Clostridium hiranonis DSM 13275] gi|210155081|gb|EEA86087.1| hypothetical protein CLOHIR_00229 [Clostridium hiranonis DSM 13275] Length = 620 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 164/633 (25%), Positives = 298/633 (47%), Gaps = 26/633 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN ++ I+++ I+++IG Y+ N Y A CPFH EKTPSFH + +K Sbjct: 12 MNDMKEIIEEIKARCDIASVIGDYIKIQPSGQN-----YKALCPFHVEKTPSFHISTAKQ 66 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + D + ++K ++ Sbjct: 67 VYKCFGCGEGGDVINFVMKIENLDFMDAVRLLANRCGIDINFNIDEETKQKIELSKKYQD 126 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGF 178 + A F+ +L +++ R + YL RG+D I+ F LGY+ DS SL ++ + +KG+ Sbjct: 127 IHTEAARFYFSNLVKSKN-RGYDYLRNRGLDDKTIKRFGLGYSQDSWNSLMDYLIEEKGY 185 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E+++E GL+ + YD+FRNR++FPI RG VI FGGR L KYLNSP+ Sbjct: 186 SQEELLECGLIGKSTKTDKYYDKFRNRVMFPIFDYRGNVIGFGGRVL-DDSLPKYLNSPD 244 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F+K NLY A L SS +ILVEGYMD++SL Q G+Q V++L Sbjct: 245 TLIFNKRHNLYGLNFARKNL-----------SSRTVILVEGYMDLISLYQYGIQIAVATL 293 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RL+ + + +++ +D D PG +A+ +AID+ + G V + L +D Sbjct: 294 GTALTSQQARLIKRYADNVIISYDSDGPGTKASLRAIDI---LVEAGLSVKVLDLKDAKD 350 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++R YG + K + +++P + + + + N I +K Sbjct: 351 PDEYVRKYGTDEYRKAMKDAVPRIKFKIDNLKSYFDLSKDQDNIKFAQEAVNIIKQLKSP 410 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 YY + + + +Q E G + + + +++ + + Sbjct: 411 VEIDYYIKYLSEIVQLDEDAVKREIYGKSYSSRNLSNGKFNNKFNKKEEKPIEKMDAIQH 470 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L E L+ ++N PA ++ ++ + + +K+ ++L S +K P+E+ Sbjct: 471 GEELTEIKLMKIMMNIPAAREKVLLKIDEKELLMEDSKKILNYL-SKIDSEKIVEPDEL- 528 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + L K + + V + L + L + + + Sbjct: 529 EGINDEYIKSLKKTSLESINTKNMKEIEETVKSVRRNSLKKTIDNLRIKQEELGAKSKIL 588 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + E + + E++ ++ + Sbjct: 589 AESDKDAAKELDLEIMNLALQS-VELNKRLRNL 620 >gi|119488472|ref|ZP_01621645.1| DNA primase [Lyngbya sp. PCC 8106] gi|119455283|gb|EAW36423.1| DNA primase [Lyngbya sp. PCC 8106] Length = 666 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 164/646 (25%), Positives = 284/646 (43%), Gaps = 38/646 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I +++ + V R+ D+ CPFH+EK+PSF + +K Sbjct: 5 RIHPDTIEEVKQRADIYDVVSERVVLKRQGK-----DFAGLCPFHEEKSPSFTVSTNKQM 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C G+ + FL L SF + V LA V + P+ ++ + + L Sbjct: 60 YYCFGCGAGGNAIKFLMELDKSSFADVVLDLARRYQVSVKTESPEQRQELQQKLSLREQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ +AT F+ H+L ++ Y +R + + I+ F+LGYAP L ++ + Q Sbjct: 120 YEILAIATSFYQHALSQSQGIEALDYLTSKRRLSTETIQHFQLGYAPKGWEMLYDYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K F + +AGL++ YDRFR+RL+ PI +G+VI FGGRTL E KYLN Sbjct: 180 KHFPVHLVEQAGLILPRKKGNGYYDRFRDRLMIPIHDIQGRVIGFGGRTL-SDEQPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK L+ A + K + ++VEGY DV++L AG++NVV Sbjct: 239 SPETELFDKGKTLFGLDKAKTAISKQDKA----------VVVEGYFDVIALHAAGIENVV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 ++LGTAL+ Q+R L + S +I+L FD D G +AA +AI ++ ++ + Sbjct: 289 AALGTALSMTQVRQLLRYSESKQIILNFDADTAGAKAAERAIGEIENLAYQGSVQLRILN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 LS G+D D F+ ++ L+ + +D + R E ++ ++ + Sbjct: 349 LSDGKDADEFLYSSSSEDYQNLLENAPLWIDWQISQMLVGRDLTKVVEAQQVAQNMVKLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD--QKGPSQRLMQSS 470 I+ R Y Q+ L Q + I + + R RD + S + Sbjct: 409 QKIEQDLQRSQYIQSCAAILSQGEVRLIPFLVKTLQKQLQKLRRRDEFKAEESSDIELPV 468 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-Q 529 L + L + + L H + E + + ++++ + + LW + + Sbjct: 469 LAEQSLLPEAEALLLRIYLHCSQHRQTIVEALE-IGNLQFSFSHHRFLWRNILEIEENSE 527 Query: 530 KYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYK 586 ++ RL + F + +Q+D + A +++R L L + Sbjct: 528 GAIESIDLISRLQDHLLEFPDQQQQIDHLLYLDDKPIANLRRTPLEIRAAIASMELTLCR 587 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + R L+ E + + L H +I ++E Sbjct: 588 KRRSLASHM------WQNTDCTENLELSKMYHEELLAAHQRIKELE 627 >gi|309388944|gb|ADO76824.1| DNA primase [Halanaerobium praevalens DSM 2228] Length = 597 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 161/603 (26%), Positives = 276/603 (45%), Gaps = 29/603 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y +FI +L ++ I +LI Y++ + Y CPFH EKTPSF N F Sbjct: 3 RYSDEFINELKENVDIVDLISDYLELKKTGN-----RYKGLCPFHSEKTPSFFVNPDNNF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD ++FL + +F+E+++ LA +G+ LP ++ + K K + + Sbjct: 58 YHCFGCGAGGDSINFLMEIENLTFVETIKMLAERSGMELPNLNDQQRKHYKKRERVFSAN 117 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ F+++ L K+ YL +RG IE F+LGYA D L L++KGFS Sbjct: 118 KLTAQFYNYLLTETNMGKKAFNYLKKRGFSKKEIEDFQLGYAADEWQLLINFLQKKGFSL 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 + + +AGL I + + YD+FRNR+IFPI ++RG+VIAFGGR L +S KYLNSPE Sbjct: 178 DLLEKAGL-ISKSKNNSYYDKFRNRVIFPIFNNRGEVIAFGGRILKSEKSYGPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K KNLY A ++ + I++EGY DV+ + G +N ++SL Sbjct: 237 TPIFSKKKNLYGLHLAKETIR----------EKNSCIIMEGYTDVIQAHKNGFKNSIASL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T+ Q L+ + + + +D D G +A + +D+ G V + L +G D Sbjct: 287 GTAFTKEQAELIKRYAENAYIAYDADTAGNKATLRGLDI---LSQTGINVQVIQLEKGSD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD ++ G + F I ++ L+D + +N+ + P R ++ + + ++ Sbjct: 344 PDQLLKNEGASTFNNYIENAVNLIDFKIEMIIQNKDISDPGIRKKVLRSIVELLTEVEAD 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y + + + E + K +R + ++ Sbjct: 404 LEREIYLERAAAKTNFKAEVLAKEVAKELEKKKIKEPNRAKTKKRKQKKFDLY---SQLS 460 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E +L I++PA+ ++ E+ ++ Q L +LF + E+I Sbjct: 461 YYQKVEEEILAHFISNPALREKIVNEVTAKDFNGRTAQ-LAEYLFQGKIISNSVKLEKIK 519 Query: 539 QRLCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L E+L + D + + + + N V ++ L ++ L + Sbjct: 520 DSLEAELLSYWSEILVKQDNSLTENHILELASYLNSKSVCNNKEKLCTLLRKKELSLDKL 579 Query: 596 EEI 598 I Sbjct: 580 NRI 582 >gi|227551145|ref|ZP_03981194.1| DNA primase [Enterococcus faecium TX1330] gi|257896231|ref|ZP_05675884.1| DNA primase [Enterococcus faecium Com12] gi|227179707|gb|EEI60679.1| DNA primase [Enterococcus faecium TX1330] gi|257832796|gb|EEV59217.1| DNA primase [Enterococcus faecium Com12] Length = 627 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVIKVADFEQIPLEDQWRQRTLAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 FS E + +GL + + DRF R++FP+R+ +GQ I F GR L+ + Sbjct: 193 SFSNELLERSGLFV-AHDDGRMSDRFYQRVMFPLRNPQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + ++L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEVLLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + G V V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSRLGLSV--V 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLENEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + + + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFRVSRETIQKQLRELRRTNQQNRQEPQENQHTQTKRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 KFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|269926940|ref|YP_003323563.1| DNA primase [Thermobaculum terrenum ATCC BAA-798] gi|269790600|gb|ACZ42741.1| DNA primase [Thermobaculum terrenum ATCC BAA-798] Length = 623 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 153/645 (23%), Positives = 275/645 (42%), Gaps = 63/645 (9%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I+++ I I +IG +V+ R + + A CPFH EKTPSF + Y+CF Sbjct: 8 IIEEIKSRIDIVEVIGSFVELRRTGS-----RFKALCPFHQEKTPSFIVFPERQTYHCFG 62 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C GD +SFL SF E+V++LA AGV PK + + L + ++A Sbjct: 63 CGKSGDVISFLMETQNLSFREAVEQLAQKAGVRFEPEKPKEKSPQSEIDSLYEINKLAAR 122 Query: 127 FFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 F+H L N++ YL +RG+ E + LGYAPDS + L+++GFSE+ I + Sbjct: 123 LFNHLLMNSKAAEHARDYLKDRGLSPATWEEWMLGYAPDSWDVTSKFLQKRGFSEDLIFK 182 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AGL ++ YDRFR+RL+FPI+ G+ + FGGR + +G KY+N+PET +F KG Sbjct: 183 AGLTVERTGG-GYYDRFRDRLMFPIKDKDGRFVGFGGRAIGEG-IPKYMNTPETPIFTKG 240 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +++Y A + +++S V I + Q G +NVV++LGTA+T Sbjct: 241 EHIYGIDVAKSAIKESNLVVVVEGYVDVI----------TAHQYGFRNVVATLGTAITPS 290 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------IPGNR 347 ++LL K++ I L D D G AA + +++ + Sbjct: 291 HVKLLSKMAANICLALDADTAGQAAALRGWEVLRDSIRRRSIPIRSKGRVISSDSKLEVL 350 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 V L +GEDPD+ IR + ++I + ++D ++ TP + + Sbjct: 351 VKIATLPKGEDPDTLIRKDPSE-WARIIEGAKTVIDHFFEIVERGYDLKTPQGKTQAIAD 409 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 L I + + R +Y + + + + + + Sbjct: 410 LAPVIGDLGNPIERAHYESRLAKLVGVDENEIHLHVVQARKQSSRPGGGEAAPINLNSVS 469 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 Q E +L LI +P +L ++ + +N+ +++ + + Sbjct: 470 Q---------------EEMVLALLIRYPRLLGNLPEDFIN-DMENSPNKEILEKMQTLGH 513 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E PE + + + + + +++L E + + + L +R Sbjct: 514 E--KLTPESLLESV-DESLRQHVERLVALAST------QPELFSNEQLLELNKKINLIRR 564 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 R L + + + +G+ E L+ ++ + ++ Q + Sbjct: 565 QR-LRDLLHQHSLLLKEAMEQGDEESVRSLLQLVPTLASELRQYD 608 >gi|255659372|ref|ZP_05404781.1| DNA primase [Mitsuokella multacida DSM 20544] gi|260848458|gb|EEX68465.1| DNA primase [Mitsuokella multacida DSM 20544] Length = 592 Score = 341 bits (873), Expect = 3e-91, Method: Composition-based stats. Identities = 169/629 (26%), Positives = 286/629 (45%), Gaps = 47/629 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F++ + I ++ YV RR YW CCPFH EKT SF KGF+YC Sbjct: 7 EAFVERVSEQTDILRIVQGYVPLKRRGN-----RYWGCCPFHQEKTASFSVLPDKGFFYC 61 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIE 122 F CH G+ FLS + S+ ++++ A G+PLP P+ +++ DL ++ E Sbjct: 62 FGCHAGGNAFKFLSLIENISYFDAIKLQAEKLGIPLPERKRSPQEVARDREIQDLRKVNE 121 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A DFFH+ L +R Y RGI IE F+LGYAP + L ++G +E Sbjct: 122 LARDFFHNCLTMTRMGERGKAYFAARGIRQETIEEFQLGYAPPAWDKLSTAFLKRGIKQE 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++ +GL + YDRFR R+I PI RG+V+ FGGR L + KYLN+PET+L Sbjct: 182 FLLASGLCAERKQGGGLYDRFRGRVIIPIADERGRVVGFGGRVL-DDSTPKYLNTPETVL 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K L+ + +Q+ R I+VEGYMD +S+ AGV NVV+SLGTA Sbjct: 241 FNKRKLLFGLDRSHRAIQQEGRA----------IVVEGYMDAISVFDAGVHNVVASLGTA 290 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T + L +P I C+D D+ G +A +A+ +V G RV +++ G+DPD Sbjct: 291 FTPEHAKKLLHYAPEICFCYDSDEAGQKATIRALSIVRD---TGARVRVIVVPDGKDPDE 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 FIR +G AF L+ ++LPLV+ + + +++T D + + + + I++ +R Sbjct: 348 FIRKHGADAFRALVEKALPLVEYRLRYVLSHTNYDTLDGKVKALHEMMPVLAGIREAAVR 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + L +E Y ++ R +K K Sbjct: 408 SEYERRLAQTLMLDEGIVRSELRHYRPEAEEAVRQPIRKAV-----------AKADTALR 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 ++ A++ + + +++ +FL + E + + L Sbjct: 457 KAGRLVIRMAWQDAAVIAHLETIVPLEGIRDPAQREILTFLKAAAEEGRPVD-DMSAATL 515 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + EL + L + D + Y +L + ++ L+ E ++ Sbjct: 516 SDEAAAELSRSL------------VEDLGGRDETEAYDDSLRVLRKAY-LNALYTEHSRK 562 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + G+ E ++ ++++ ++ + Sbjct: 563 ANEYAQNGQHEACLQELNEVNKIKHEMDE 591 >gi|319941928|ref|ZP_08016249.1| DNA primase [Sutterella wadsworthensis 3_1_45B] gi|319804581|gb|EFW01451.1| DNA primase [Sutterella wadsworthensis 3_1_45B] Length = 866 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 171/665 (25%), Positives = 281/665 (42%), Gaps = 69/665 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI LL I ++IG+YV + N + ACCPFH EKTPSF + SK + Sbjct: 2 IPEGFISSLLERADIVDVIGRYVTLKKSGRN-----FMACCPFHKEKTPSFSVSPSKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLI 121 CF C G+ + FL + F E+V+RLA I G+ +P + ++E+ + L + Sbjct: 57 KCFGCGKAGNAIGFLMDIEHLEFPEAVRRLADIYGMQVPEDNSPHRQEERARAKTLGEYM 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A DF+ +LK R YL +R I F LG++PD + L+ G Sbjct: 117 KEAADFYSETLKAT--PRAIDYLKQREITGETALRFGLGFSPDGWHGLQAIF--PGEKYL 172 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + + + + YD FR R++FPIRS +G VI FG RT+ E KYLNSPET + Sbjct: 173 AKELLEVGLVLEKNGSRYDAFRGRIMFPIRSPKGLVIGFGARTMKGDEQPKYLNSPETPI 232 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HKG LY + + + R I+ EGYMDV+ L QAG + V++LGT+ Sbjct: 233 YHKGSELYGLYEGRSAVIDRARA----------IVCEGYMDVIQLSQAGFREAVAALGTS 282 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 +T ++ L+KL+ + FDGD G +AA +A++ L + G FVLL DPDS Sbjct: 283 ITPEHIKKLFKLTDTVYFSFDGDSAGRKAARRALEAALPVIQDGQAARFVLLPPEHDPDS 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKL 420 I+ G +E+ I ++LPL + L E +S +ER +L K I +K L Sbjct: 343 LIKAEGAEGYEREIEKALPLTEFLKSLLVEGKSLTYAEERVKLTAEAKPLILSMKQAPVL 402 Query: 421 RYYYSQAIRDR--------------------------LQQLFQKYITEHSGYGRYWKKNA 454 R + I + F + + + Sbjct: 403 RLALMREIARLARLQLEDLEREWNTGAPERTVLPPMDISTDFGPAGQRWNSGPTAAGRFS 462 Query: 455 RHRDQ--KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 R G + + S + ++ K +RE +L + +PA+L + ++ D + Sbjct: 463 RWGGAGSYGRGWQPRRQSYFEPRVRAK-DVRER-MLQCFLAYPALLSDFTPQIEDEFVTS 520 Query: 513 NEL--QKLWSFLFSDFVEQKYF-LPEEIHQRLCERG----FGELLKQLD-----RQVRDA 560 Q + + E + L + + LL + ++ Sbjct: 521 ESASSQYIVEVWRAAAHEDGSVTNTAALLACLEKSPNYDHYARLLAEEMTIETPQEAARL 580 Query: 561 GLWSATTEANIVDVRQGYQQALAL------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 L E + V+ + + + L+++ +IE I++ + + + Sbjct: 581 ELKRGFLELELDQVKDRLLKLSEEPATADTLAKMKPLAKRSRDIEALISEAAEEEKDWRR 640 Query: 615 AILIS 619 Sbjct: 641 RAEEQ 645 >gi|110637339|ref|YP_677546.1| DNA primase [Cytophaga hutchinsonii ATCC 33406] gi|110280020|gb|ABG58206.1| DNA primase [Cytophaga hutchinsonii ATCC 33406] Length = 653 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 167/671 (24%), Positives = 294/671 (43%), Gaps = 49/671 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +D I + I + +I +V R+ Y CCPFH+EKTPSF +KG Sbjct: 1 MRLTKDTIDQIQQSIDVVEVISDFVSLKRKG-----HYYSGCCPFHNEKTPSFTVTPAKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLI 118 Y CF C GD + F+ G S++E++ +A + + + E+ ++ + ++ Sbjct: 56 IYKCFGCGKGGDAIQFIMEHEGASYVEAMAYMAKKYNIEIKEEELSEEQNFEQSEKDSML 115 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + A+ ++ L N+ D + Y ERG I+ F+LGY+ D ++ +K Sbjct: 116 VVTNYASQYYTDQLWNSEDGKSIGLSYFKERGFREETIKKFELGYSHDQWDGFTKNAIEK 175 Query: 177 GFSEEKIIEAGLLIDGDNSA-----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 G+ E + + GL I+ DN+ +DRFR R++FPI + G+V AFG R L ++ Sbjct: 176 GYKTEFLTKTGLSIERDNANENSEKKFFDRFRGRVMFPIHNVAGRVTAFGARILKADKTQ 235 Query: 232 -KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNS E++++HK K LY F A ++K +LVEGY DV+SL Q+G Sbjct: 236 AKYLNSIESVIYHKSKILYGLFQAKQAIRK----------EEECLLVEGYTDVISLHQSG 285 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+NVV+S GT+LTE Q++L+ + +P I + +DGD GL+A+ + +DL L V+ Sbjct: 286 VENVVASSGTSLTEDQIKLVKRYTPNITILYDGDAAGLKASLRGVDL---ILQQDMNVSI 342 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 V+ +GEDPDS+++ G TAF+ I + + N P +RAE+ + Sbjct: 343 VVFPQGEDPDSYVQKIGPTAFKDYIKSNKKDFISFKTEISLKEIGNDPIKRAEVIKDIVE 402 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--------- 461 I+ + D R + + L+ Q I+E++ + ++ Sbjct: 403 SISKVPDAIKRSVFFRECSKLLEIDEQILISEYNKKAIQKGNQEAKKWEEDRHALAELQA 462 Query: 462 -PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--------ILQEQYQELADIRYDN 512 P L + + L E ++ LIN+ + + EL D+ + N Sbjct: 463 IPDIELPDDIVRLSIEEESLKLHERDMMRYLINYASSPMEQEMPLSDYLIHELQDVEFKN 522 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + + + L + Q+ + + L + ++ Sbjct: 523 PAYDYIIKKIIDTRLNGNTVLHTDFLQQDQPQYVRDAAIDLLSTKFQLSDNWEKFQIDVP 582 Query: 573 DVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + +L + K+I ++ G E+ L+ + E+ Sbjct: 583 KEIDVLNSVVPKTVLRLKRVILKCMMRDNIKEIERIQKDGSNEELMHLLQVAMELKTISK 642 Query: 630 QIESQEAMIEG 640 I+ ++ G Sbjct: 643 DIDKTLGIVVG 653 >gi|261207558|ref|ZP_05922243.1| DNA primase [Enterococcus faecium TC 6] gi|260077941|gb|EEW65647.1| DNA primase [Enterococcus faecium TC 6] Length = 627 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 S E + +GL + + DRF R++FP+R+S+GQ I F GR L+ + Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + ++ V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|302342713|ref|YP_003807242.1| DNA primase [Desulfarculus baarsii DSM 2075] gi|301639326|gb|ADK84648.1| DNA primase [Desulfarculus baarsii DSM 2075] Length = 586 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 169/626 (26%), Positives = 275/626 (43%), Gaps = 47/626 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D I + I ++G+ V + + CPFH +K PS N +G Sbjct: 3 RIPDDVIDQVRQMADIVEVVGRRVMLRQAGR-----TFKGVCPFHGDKDPSLVVNRERGT 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CF C G+ F+ G SF E+V+ LA G+ +P D + + L+R Sbjct: 58 WHCFGCGEGGNVFGFVMKDQGLSFPEAVRELAQGLGIIIPEPDMDESARRASDEKEKLLR 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++EVA FF L Y ++RG+D I+ F LGYA DS LR HL +G Sbjct: 118 VLEVAGKFFVEQLHGPAGAEARRYLREKRGLDRRTIDEFGLGYALDSWDGLRRHLLGRGV 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ + AGLL S SYDRFR R++FPIR RG+V++FGGR L +GE KYLN PE Sbjct: 178 SEDLALRAGLL-APRESGGSYDRFRGRVVFPIRDDRGRVVSFGGRVLGQGEP-KYLNGPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + LF K LYNF A ++ + R ++VEGY DV+++ G + V+ + Sbjct: 236 SPLFFKSGALYNFDRARQHMHRKGRA----------VVVEGYFDVITMAAFGFEETVAPM 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q RLL + +PR++L FDGD+ G +AA +++D+ L G LL GED Sbjct: 286 GTALTAQQARLLARAAPRVILVFDGDEAGRKAARRSLDVFLGE---GVHPLVHLLPGGED 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDSF+R G ++ + + PL + ++ +P+ ++ + I + D Sbjct: 343 PDSFLRAQGAGPLDEALERARPLAEATIEQIVRAGDAKSPEGKSAIVAQAGELIKAMGDP 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + RL + P + + + + Sbjct: 403 VAAWGYLEDLARRLALPPRVVAASL--------------GLPVPGGPPSRPAPARCAPAP 448 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A+L + + + L K+ + + P + Sbjct: 449 EGQRDERAILEMALCSAEAARHLVGCGILESLRDPLLAKIGRAVANVLDRTGSPDPAAVI 508 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q+L + ++ L + A +A Q +A R R L +++ + Sbjct: 509 QQLEDPRLQAMVSGLASRGLCLDGVDAGRQA----------QLMAQGLRRRRLRQERALL 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + IA+ G+A++ L++ + Sbjct: 559 AQAIAEAERAGDAQRVDHLLAQRQRL 584 >gi|257092100|ref|YP_003165741.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044624|gb|ACV33812.1| DNA primase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 581 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 173/589 (29%), Positives = 269/589 (45%), Gaps = 49/589 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + + +LI YV + N + ACCPFH EK+PSF + SK FY Sbjct: 2 IPDSFIQELLYRVDVVDLIDGYVPLKKTGAN-----FAACCPFHSEKSPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G + FL G F+++V+ LA AG+ +P + + L ++ Sbjct: 57 HCFGCGAHGTAIGFLMEYTGVGFVDAVRELAGRAGLQVPDEPRHAAQHGREAQALGDIMT 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F++ LK + +R YL RG+ F LGYAP+ SL + + Sbjct: 117 RAAKFYYEQLKAS--ERAVSYLKTRGVSGEIARRFGLGYAPEGWQSLAGAF--DDYESAE 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + AGL+I YDRFR+R++FPI + +G+VIAFGGR L +GE KYLNSPET LF Sbjct: 173 LQVAGLVIRN-EQGRLYDRFRDRVMFPIINQKGEVIAFGGRVLGQGEP-KYLNSPETPLF 230 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG+ ++ A ++ + I+VEGYMDV++L Q GV N V++LGTA Sbjct: 231 EKGREVFGLPQARAVIR----------ETGTAIVVEGYMDVVALAQHGVGNTVATLGTAT 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T + L + + R+V CFDGD G +AA++A++ L L + F L GEDPDSF Sbjct: 281 TPTHVHKLLRQAERLVFCFDGDAAGRKAAWRALENSLETLPEQKSIGFAFLPDGEDPDSF 340 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G AF +LIVE++PL D L + + ++ + RA L K I ++ LR Sbjct: 341 VRQGGAEAFRRLIVEAMPLSDFLLRELAGHCDLSSAEGRARLVAVAKPLIGRLQSPLLRL 400 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK---- 478 + + F + E R + A R + L + + + Sbjct: 401 QVVKRLAQL--SDFSQAEVERLCELRPLVRAAPARVPRQAPSLLRPLLRLLLQKPELASG 458 Query: 479 ------KPSLREAALLLTL-----------INHPAILQEQYQELADIRYDNNELQKLWSF 521 E + L + +PA+L + L ++ Sbjct: 459 LPLDLLPEHSAEGRAIRLLCETIAGGGTEALAYPALL----ERLRGSECESVLHTAAAEL 514 Query: 522 LFSDFVEQK-YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + F E + +L + + L +++ G+ ++E Sbjct: 515 MQQPFAEDEIDSEFSGALGQLRDGEQRRVFALLQDKIQKLGVSGLSSEE 563 >gi|313113549|ref|ZP_07799137.1| DNA primase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624064|gb|EFQ07431.1| DNA primase [Faecalibacterium cf. prausnitzii KLE1255] Length = 591 Score = 340 bits (872), Expect = 4e-91, Method: Composition-based stats. Identities = 145/609 (23%), Positives = 261/609 (42%), Gaps = 36/609 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++I++L I L+G YV R+ Y CPFH EKTPSF+ + Sbjct: 2 IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F + + E+V+ LAA AG+P P D K + +++ ++ + + Sbjct: 57 YCFGCGAGGDAITFTKKINSIDYPEAVKLLAARAGMPEPQEDDKTGR---MRSRILSMNK 113 Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + ++ Y RG+D I F LGYAP+ +L + LR KG+++ Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQFLRDKGYNQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ +GL S Y F R++ PI RG +IAFGGR L KY+NSPET+ Sbjct: 174 QELDASGLFKRS-ASGRIYCLFWKRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK + ++ A + +L EGYMDV+S+ QAG+ V + GT Sbjct: 232 VYHKSETVFALQIAKRSAVR------------RFVLCEGYMDVISMHQAGIDTAVCACGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+RL+ + + ++L +D D+ G +A ++++L +V + + +DPD Sbjct: 280 ALTPEQVRLISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YG F+ L+ +D R +R E N + + Sbjct: 337 EYIKKYGAERFKALLDGVGNALDFRLGRLRSQYDLAQDAQRLEYVKEAVNMLAERSNPTE 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-----RLMQSSLVKGK 475 + Y+ + + +T+ + R ++ + ++ G Sbjct: 397 QEVYAGRLAEETNISKTAIMTQLETAVKRAGSKHRWEKKQQALKSGEMNQINVPYSAGGS 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + + LL ++ P + +L ++ + ++L+ + E Sbjct: 457 QALGIASAQQRLLAAMLREPHYIDLVQGQLTAEQFVLPQQKELFEAMLRCRQEGIEISLT 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + E E L L Q D + + +G A K + + + Sbjct: 517 TLRAFVSEEALNE-LSHLAAQYSDVNCTPDDIRLYLDRIARGMPMA---GKAAHMSNEEL 572 Query: 596 EEIEKQIAQ 604 + + + + Sbjct: 573 SDYLQSMRE 581 >gi|257884905|ref|ZP_05664558.1| DNA primase [Enterococcus faecium 1,231,501] gi|257820743|gb|EEV47891.1| DNA primase [Enterococcus faecium 1,231,501] Length = 627 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQNRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 S E + +GL + + DRF R++FP+R+S+GQ I F GR L+ + Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + ++ V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|330813717|ref|YP_004357956.1| DNA primase [Candidatus Pelagibacter sp. IMCC9063] gi|327486812|gb|AEA81217.1| DNA primase [Candidatus Pelagibacter sp. IMCC9063] Length = 585 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 154/626 (24%), Positives = 293/626 (46%), Gaps = 45/626 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP+ +++++ + +S+++G V +R ++ PF +EKTPSF ND KG Sbjct: 1 MKYPKSYLEEIRQRLKVSDVVGSTVKLTKRGK-----EFVGLSPFTNEKTPSFTVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS G FL+ + +F ++V+RLA+ AG+ + EK ++ Sbjct: 56 FYHCFSSGEHGGIFDFLTKIEKLTFGDAVRRLASKAGMSEYKFSKLDVETEKKVKRSEKI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ ++ H ++ +K YL R + IE F+LG+ D + H + G+ E Sbjct: 116 FQLFFNYCHKNIFTEENKNHLDYLLNRSLKKATIENFQLGFCDDGSRAS-NHFLKLGYHE 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++IE GL + RF+NR+IFPI++ G+ I GGRT+ KY+NSPETI Sbjct: 175 KELIETGLFYLHEQKNILIPRFKNRIIFPIKNLFGEFIGCGGRTVLSSVPAKYINSPETI 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F KG NLYNF A + + ++ ++++VEGYMDV+SL ++NV +SLGT Sbjct: 235 FFKKGNNLYNFNNAKSENK----------NTDYLLIVEGYMDVVSLYNHDIKNVCASLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ Q+ L W+ I++CFDGD G AAY+A + ++ + V+F+++ +G DPD Sbjct: 285 AITDNQINLAWRNFKNIIICFDGDKSGFAAAYRAAEKLIKISKANHTVSFMIMPQGLDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ +GK F L+ + + + +++ T+ + A+LE L + + I+D + Sbjct: 345 DYVGKFGKDGFTSLVKKKKDITEFVFEYATKQLQDYSASSLADLEKRLMDIADTIEDVII 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + YY ++++ + K +L + + Sbjct: 405 KKYYKGFFKNKIFENLIKKNKNKLNKF-----------------QLSSKFDIDRLEMSEL 447 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 ++E +L LI P + ++ + +++I +K+ + L + E+I + Sbjct: 448 EVKEFSLCQLLIKFPEMSEKNIERISEIDLSLELTKKIRTALLDISLNGDNCNYEKIKEI 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + L ++ + + ++ L +K + +K Sbjct: 508 LLGANIQNIDTFLKFVDANSFMTNVDSDT------------FVSLIEDYELQLKKIQKDK 555 Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626 +I ++ + + ++ L + Sbjct: 556 KIEELEKSFSSNMSEQALNELISLKN 581 >gi|291614900|ref|YP_003525057.1| DNA primase [Sideroxydans lithotrophicus ES-1] gi|291585012|gb|ADE12670.1| DNA primase [Sideroxydans lithotrophicus ES-1] Length = 578 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 179/623 (28%), Positives = 280/623 (44%), Gaps = 50/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL + I ++I +Y+ + N Y ACCPFH EK+PSF + SK FY Sbjct: 2 IPKSFIQDLLNRLDIVDVIERYLPLKKAGAN-----YVACCPFHTEKSPSFTVSQSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G + F+ G F+E+V+ LA GV +P + + K+ DL L++ Sbjct: 57 HCFGCGAHGTAIGFVMEHTGMGFVEAVEDLAKSIGVSVPQEASNVPQH-KVAPDLYDLMQ 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 AT ++ LK R YL RG+ F +GYAPD +L+ + + + Sbjct: 116 SATRYYREQLKQT--PRAIDYLKRRGLSGEVAARFGIGYAPDDWQNLKAVV--PNYQDAS 171 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++E GL+I+G YDRFR+R++FPI + RGQVI FGGR L KGE KYLNSPET LF Sbjct: 172 LVETGLVIEG-EGGKRYDRFRDRIMFPIVNVRGQVIGFGGRVLDKGEP-KYLNSPETTLF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG LY F A ++ R +I+VEGYMD ++L Q GV+ V++LGTA Sbjct: 230 EKGHELYGLFQAQKAIRAHQR----------VIVVEGYMDAVALAQHGVEYAVATLGTAT 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Y ++ L +L ++V CFDGD G +AA++A++ L L G R+ F+ L DPD++ Sbjct: 280 TPYHVQKLLRLCDQVVFCFDGDRAGQKAAWRALENALPQLQDGKRLGFLFLPEEHDPDTY 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR +G AFE + SLPL L + T T + ++ L + + + I Sbjct: 340 IREFGHEAFELELENSLPLSGYLLRELTAQVDLRTQEGKSTLLKNAQPLLTAITAPTTAL 399 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + L E A R ++R S L Sbjct: 400 LLRKEVA----ALAGVTQAELEALWSIKPVAAPQRAAPPKARRTTPSGL----------- 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 +LL L+ P + ++ + + NE + + + Q+ Sbjct: 445 --RSLLRCLVMKPELARQLPGDWLHGHAEGNEAAAIAALADWLHEGADEVSTAALTQQFQ 502 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 G + + + +I G + + ++ + +E Sbjct: 503 GTMHGPVFA-----TAQGDIMHLGDDFDIGAEFSGLLR----KMQLDAVNAEIAMLEA-- 551 Query: 603 AQVTAKGEAEKTAILISILHEVH 625 + + E E+ L ++ Sbjct: 552 NGLKSPVEQERYKQLSEQRKQLK 574 >gi|295101749|emb|CBK99294.1| DNA primase, catalytic core [Faecalibacterium prausnitzii L2-6] Length = 592 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 145/616 (23%), Positives = 264/616 (42%), Gaps = 33/616 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++I++L I L+G YV R+ Y CPFH EKTPSF+ + Sbjct: 2 IPHEYIEELTRRTDIVELVGGYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F + ++E+V+ LA AG+P P D K + +++ ++ + + Sbjct: 57 YCFGCGAGGDAVTFTKKINSIDYVEAVKLLAQRAGMPEPTEDDKTGR---LRSRILTMNK 113 Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + ++ Y RG+D I F LGYAPD +L +HLR KG+++ Sbjct: 114 DAARFFHACLNSTVEEARQARAYWRRRGLDDKTINRFGLGYAPDDGQALYQHLRDKGYNQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ +GL + Y F R++ PI RG +IAFGGR L KY+NSPET+ Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWRRVMTPIFDLRGNIIAFGGRVL-DDSKPKYVNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK ++ A S +L EGYMDV+S+ QAG+ V + GT Sbjct: 232 VYHKSDTVFALQIAKRSA------------SHRYVLCEGYMDVISMHQAGIDTAVCACGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q++L+ + + ++L +D D+ G +A ++++L RV + + +DPD Sbjct: 280 ALTPDQIKLISQYADEVILSYDSDEAGQKATLRSLEL---FRNSPVRVGVLQIPGAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YG F+ L+ +D R +R E + + Sbjct: 337 EYIKKYGADRFKALLDGVGNALDFRLGRLRSQYDLKQDAQRLEYVKEAVEMLAERSNPTE 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ----RLMQSSLVKGKL 476 + Y+ + + + + + + R + Q ++ G+ Sbjct: 397 QEVYAGRLAEETNISKTAIMAQLADAVKKAGSKRRREQDRARLQEGEMNQIKVPYSAGRG 456 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + E LL ++ P + + +L ++ + ++L+ + + Sbjct: 457 ALGMASAEQRLLAAMLREPGYIDKVSAQLRPEQFLQPQQKELYEAMLRCREQGVEVSLAT 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQK 595 + + E E L +L Q D + + + +G + A + + Sbjct: 517 LRAFVSEEALNE-LSRLAAQYSDVNCTPEDIKLYLERIARGTPVASRAASMSTNDIEQYL 575 Query: 596 EEIEKQIAQVTAKGEA 611 + + +Q ++ Sbjct: 576 QSMREQKQGTADAEDS 591 >gi|260578218|ref|ZP_05846137.1| DNA primase [Corynebacterium jeikeium ATCC 43734] gi|258603674|gb|EEW16932.1| DNA primase [Corynebacterium jeikeium ATCC 43734] Length = 662 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 133/673 (19%), Positives = 240/673 (35%), Gaps = 66/673 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF DEKTPSFH + G+ Sbjct: 5 RIPERDIEAIREQTPIEEVVGEYVQLKPGG----VDSMKGLSPFKDEKTPSFHVRPNHGY 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CFS GD FL + SF E+V+ A G + + +E+ + L+ Sbjct: 61 FHCFSTDQGGDVFKFLMLMEHMSFPEAVEACAERIGYRINYEGGRPGNREEPGTRRRLVA 120 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A +F+ + +L ERG E F GYAP L +HL+QKG Sbjct: 121 ANKAAFEFYRKEFLGDAEGADVARNFLIERGFTMEHAEQFGCGYAPAGWDRLTKHLQQKG 180 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F+ ++I AGL DRF RL++PIRS G VI FG R L + KYLN+ Sbjct: 181 FTFKEIEAAGLGR--MGKRGPIDRFHRRLLWPIRSVSGDVIGFGARKLFDDDKLGKYLNT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K K L+ A + + ++VEGY DV+++ AGV V+ Sbjct: 239 PETMLYKKSKVLFGIDQAKRNI----------VAKHQAVVVEGYTDVMAMHAAGVDTAVA 288 Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 + GTA L L + I+ FDGD+ G +AA +A + Sbjct: 289 ACGTAFGAEHLSALRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQQFSGR---SY 345 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G+DP G A +L+ +P+ + + + + + D R + Sbjct: 346 VTVAPGGQDPCDVRIKRGDAAVRELVASRIPMFEFVIRTLIADYDTASIDGRVHALRRIV 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ- 468 + IKD LR Y++ + + + R + + Sbjct: 406 PVLAGIKDDALRDEYARQAAGWVGWDNPNDVLDQVRKEARKSGGQRPKLELKTGVGPAGA 465 Query: 469 ----------------------------SSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + + ++ + P + Sbjct: 466 GGAGAGAGSAGAGSAGTGSGGGPNLHVVKGMERPNPNDDYLEGPREVMKLALQEPQLAST 525 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + + + + + + S +R+ + + + ++ Sbjct: 526 IFDLMPPESFVHPTYVAMAEAVASLGGAANSNGGAGWIERIAAQMKDPMGAAVVSELAVE 585 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 L Y A+ + R + + +++ ++ ++ + E+ L + Sbjct: 586 DLHCLPERLP------YYADAIMARMQERWVGSEIADMKSRMQRMRPDLQKEEYNALFAD 639 Query: 621 LHEVHIQIHQIES 633 + + + Sbjct: 640 VIALEKYRRSLHE 652 >gi|91216015|ref|ZP_01252984.1| putative DNA primase [Psychroflexus torquis ATCC 700755] gi|91185992|gb|EAS72366.1| putative DNA primase [Psychroflexus torquis ATCC 700755] Length = 653 Score = 340 bits (871), Expect = 5e-91, Method: Composition-based stats. Identities = 151/656 (23%), Positives = 282/656 (42%), Gaps = 59/656 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG YV + +N + PF +E++PSF + K + Sbjct: 2 ISKSTIDKVFDISRVEEVIGDYVQLKKSGSN-----FKGLSPFTEERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KEK + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHYTYPEAIKHLAKRYNIEVEETEQSSEEKEKASERESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + + + + Y +RG S +E F LGY+PD + + +KG+ Sbjct: 117 NEFAKSFFIKQMLHTDEGKSVGLSYFKKRGFTSETMEKFDLGYSPDEWQAFTDSALEKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 E + + GL I +DRF+ R++FPI S G+++ FGGR L+ + KYLNSP Sbjct: 177 RLEFLEKTGLSIV--KGEKRFDRFKGRVMFPIHSMSGRILGFGGRILTTDKKQAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K + LVEGY DV+ Q G++NVV+S Sbjct: 235 ESDVYHKSKVLYGLYQAKQSIAK----------ADNCYLVEGYTDVIQFNQTGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V L GE Sbjct: 285 SGTALTPEQIRLINRLTNNITVLFDGDAAGLRASVRGIDL---ILEQGMNVKVCLFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + K E + + + N P ++AE+ + N I+ I D Sbjct: 342 DPDSFAKSNSKEELETYLNSNAQDFIRFKASLLLEDAENDPVKKAEVVRDIVNSISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM-QSSLVKGKL 476 Q + Y Q+ + L+ + + +K ++ R ++G + + + + Sbjct: 402 QITQEIYIQSCSNLLEVSEDVLFSTLAQILAKDRKESQRRPRQGSLEIVKEKKTEPVVSK 461 Query: 477 SKKPSLREAALLLTLINHPA----------------------------ILQEQYQEL--A 506 + + E ++ L+ + + ++ + EL Sbjct: 462 VNQQYVLERNIIQLLLKYGGDTAVFVDVDFDFDEFDKDKHTEVKREYVVFEKIFIELQED 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 ++ + N ++L++ + + +++ + L E+ + ++ Sbjct: 522 EVEFSNPLFKELYALIIEIYTKERALKIDTFINHLKPDLSQEVTSIIMENEKNQLHDWKR 581 Query: 567 TEANIVDVRQ---GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 E ++D + L R L+ ++ +++ + I + + + E + Sbjct: 582 QEIFVIDKSEVDPREVMETILNLRRFLIRKKVQDLSEIIREQKEEVDRELMIETME 637 >gi|222151461|ref|YP_002560617.1| hypothetical protein MCCL_1214 [Macrococcus caseolyticus JCSC5402] gi|222120586|dbj|BAH17921.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 583 Score = 339 bits (870), Expect = 6e-91, Method: Composition-based stats. Identities = 149/631 (23%), Positives = 265/631 (41%), Gaps = 49/631 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ + I ++ I +++ QYV ++R N Y CPFHDEKTPSF + K Sbjct: 1 MHIEPELIHEIQQKNDILDVVSQYVKLEKRGRN-----YIGLCPFHDEKTPSFSVSVEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +CF C G+ F+ + SFIE+V+ L AG+ + D + + Q +I + Sbjct: 56 ICHCFGCKKGGNVFQFIEQIEAISFIEAVKILGERAGIEV-KTDDDTPQADNEQNKMIAM 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E ++++ LK + + YL RG I K+GY+P+ R++L+ KG+ Sbjct: 115 HEAMAHYYNYVLKAIEQAEPALKYLYSRGFTDEQIAREKIGYSPNVSTFTRDYLKNKGYD 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E +AGLL + + + +DRFRNR++FPI+ RG+VI F R++ E KYLNSPET Sbjct: 175 EALAYDAGLLSRNEETISYFDRFRNRIMFPIKDFRGKVIGFSARSIDGSEP-KYLNSPET 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F K LY+ A ++ + +IL+EG+MDVL L +AG+ N ++++G Sbjct: 234 LIFQKRNVLYHIDVARKPIR----------NQDEVILLEGFMDVLKLNEAGILNAIATMG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TAL+ + L KL+ I L +DGD G+ A + + G V V + +G DP Sbjct: 284 TALSREHILQLKKLASNITLMYDGDRAGIEAT---LKIGKQLNQEGMNVFVVPMKKGYDP 340 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D I G F + + R + N + ++ + + Sbjct: 341 DEMITELGTDKFLSYFNHNKLTYVSFYMRHYLDEIKNNDLAYEKHLNNIIEDAKLMNSEH 400 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ I + F + R + + ++ + Sbjct: 401 LQKKVLHEITELFNVDFDSLKFKVQKDNRIQARM----------------PTFESEVLSR 444 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 P L E +L +N + + ++ + + Q ++ L + ++ F+ + Sbjct: 445 PMLAERTVLKYFMNDRMLFMQFKDQITEEHFSVKVHQMIYKALSGYYKIEETFMLSKFSS 504 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + LK V + L ++++ Q + ++ Sbjct: 505 HVPHECHETCLKIDAMLVNH------------EPSIEEVNDYLYVFQQEPKEIEQLQSLK 552 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q++ + EK A L+ + + Q Q Sbjct: 553 AQLSDAVSTENHEKRAQLMREIINLQRQKKQ 583 >gi|297539658|ref|YP_003675427.1| DNA primase [Methylotenera sp. 301] gi|297259005|gb|ADI30850.1| DNA primase [Methylotenera sp. 301] Length = 578 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 170/596 (28%), Positives = 277/596 (46%), Gaps = 43/596 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + I ++I + + N Y ACCPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQELLNRVDIVDVIDKSTPLKKAGAN-----YSACCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121 +CF C G + FL G SF+E++ LA + G+ +P K E L + Sbjct: 57 HCFGCGAHGTAVGFLMEYQGLSFVEAINDLARMVGMIVPQEARDANKPEHKVVLGLQESL 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A ++ LK + R YL RG+ F++GYAP +L+ + E Sbjct: 117 QQAAQYYKAELKKS--PRAIEYLKARGLSGQVAAKFQVGYAPAGWQNLQSVF--PNYDNE 172 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AGL+++ D YDRFR+R++FPI +GQVI FGGR ++ ++ KY NSPET L Sbjct: 173 ALSVAGLVVENDQGRR-YDRFRDRIMFPIHDQKGQVIGFGGRVINPEDTPKYYNSPETPL 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY F A ++ + R ++VEGYMDV++L Q G++ V++LGTA Sbjct: 232 FQKGHELYGLFLARRAIRDAGRA----------LVVEGYMDVVALAQYGIEYAVAALGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T + + L + + +V CFDGD+ GL AA++A L L G +++F+ L + DPDS Sbjct: 282 TTPFHITKLMRQTDEVVFCFDGDNAGLTAAWRAAMNALPALTDGLKLSFLFLPKAHDPDS 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +GK FE I ++PL + K +E+ + +++ + + I + Sbjct: 342 YVREFGKEQFEAEIKTAMPLSQYILKHLSEDNPLQSQEDKVRFLNEAEPIMQQINAPRSA 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + + L Q I E + N + R S Sbjct: 402 MYLRKKVAE----LAQLSIDEMQSLLKLPNLNKAPAQARPKLTRTTNS------------ 445 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 LT+I PA++ + +L I +++ L + + + P I + L Sbjct: 446 -LHHHFCLTMIMQPALVDK--DDLLWIAGSSDDELLLRQTI-ETCLMHPHSKPVVIMREL 501 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + ++ +L +++ +A RQ +Q L L K L Q E Sbjct: 502 ESKVDANIITELKKELNVLDETLDLAQAMSG-ARQQLKQ-LYLQKNETALLAQVSE 555 >gi|257877974|ref|ZP_05657627.1| DNA primase [Enterococcus faecium 1,230,933] gi|257881239|ref|ZP_05660892.1| DNA primase [Enterococcus faecium 1,231,502] gi|257889827|ref|ZP_05669480.1| DNA primase [Enterococcus faecium 1,231,410] gi|257892236|ref|ZP_05671889.1| DNA primase [Enterococcus faecium 1,231,408] gi|260559025|ref|ZP_05831211.1| DNA primase [Enterococcus faecium C68] gi|257812202|gb|EEV40960.1| DNA primase [Enterococcus faecium 1,230,933] gi|257816897|gb|EEV44225.1| DNA primase [Enterococcus faecium 1,231,502] gi|257826187|gb|EEV52813.1| DNA primase [Enterococcus faecium 1,231,410] gi|257828615|gb|EEV55222.1| DNA primase [Enterococcus faecium 1,231,408] gi|260074782|gb|EEW63098.1| DNA primase [Enterococcus faecium C68] Length = 627 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 18 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 72 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 73 FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 132 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 133 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 192 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 S E + +GL + + DRF R++FP+R+S+GQ I F GR L+ + Sbjct: 193 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 251 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 252 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 301 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + ++ V Sbjct: 302 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 359 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 360 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 419 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 420 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 479 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 480 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 537 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 538 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 585 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 586 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 627 >gi|302345809|ref|YP_003814162.1| DNA primase [Prevotella melaninogenica ATCC 25845] gi|302149268|gb|ADK95530.1| DNA primase [Prevotella melaninogenica ATCC 25845] Length = 651 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 158/667 (23%), Positives = 281/667 (42%), Gaps = 55/667 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I ++ +V + T Y CPFHD++TPSF + KG Y Sbjct: 9 IDRPTVDRIMNASNIVEVVSDFVSLRKTGT-----SYKGLCPFHDDRTPSFSVSPVKGVY 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + +++E + + + Sbjct: 64 KCFSCGAAGNAVKFIMEHEQMTYPEALKWLANKYHIEVHERELTNEEKQQENERESMFLV 123 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F+ L N D Y RG I F+LG+ SR++ + + GF Sbjct: 124 NEWAAKYFNDILHNDVDGMAIGMQYFRSRGFRDDIIRKFQLGFCLSSRHAFADVALKAGF 183 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + +I+ GL + DRF R++FP G+V AFGGR L KG S KY+N Sbjct: 184 QRDFLIKTGLC-FERENGELIDRFNGRVMFPWVGVSGKVTAFGGRLLDSRTKGVSQKYVN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+++++HK + LY F A + K + +VEGY DV+S+ Q G++NVV Sbjct: 243 SPDSVIYHKERELYGIFQAKKAIAK----------HDLVYMVEGYTDVVSMHQCGIENVV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+RLL + +P IVL +DGD+ G AA + D++L V +LL Sbjct: 293 ANSGTALSVHQIRLLHRFTPNIVLLYDGDEAGQHAALRGTDMLLAES---MNVKVLLLPD 349 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R Y F K I ++ +++K + P +R+E + I+ I Sbjct: 350 GKDPDEFARSYSAEDFRKYIEDNQTDF-IVFKINVLLKGVTDPIKRSEAVGSIVQSISVI 408 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVK 473 KD LR Y + +R + + + + Y ++ + + + + Sbjct: 409 KDPILRDTYIRECANRTGVSERTLMDQMNRNIYSNREQQTREQQQHRAAVMEEQREDAMA 468 Query: 474 GKLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDN 512 S E L+ ++ I ++ E ++ + N Sbjct: 469 VASKPTTSKVEQMLIQAVVKDGEKVIFRDVKDENSGQTYNLTVAQYIAYDLGSDNLGFSN 528 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571 K+ E+ + E Q ++ +DR L TE Sbjct: 529 ELYTKILQEAVEHCGEEGFKAEEYFTQHADINIASVAVRLSVDRFQLAGSLQVKETEQT- 587 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +R +A + R +S +E+ +++ QV E ++ I + ++ + Sbjct: 588 --LRDRVIHLVADF-RLEYVSFHLKELNERLLQVKDSQEMQEIMSEIMRTQNLRNELAKK 644 Query: 632 ESQEAMI 638 ++ Sbjct: 645 TGSNILV 651 >gi|238897854|ref|YP_002923533.1| DNA biosynthesis; DNA primase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465611|gb|ACQ67385.1| DNA biosynthesis; DNA primase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 585 Score = 339 bits (870), Expect = 7e-91, Method: Composition-based stats. Identities = 176/604 (29%), Positives = 281/604 (46%), Gaps = 50/604 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I+ LI + ++ N ++ACCPFH EKTPSF ND K F Sbjct: 4 RIPRKFINDLLTRTDIAALIDARLPLKKKGKN-----FYACCPFHHEKTPSFSVNDEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-----EKKEKIQTD 116 Y+CF C G+ + FL F+ES++ LA+I G+ +P +++ + + Sbjct: 59 YHCFGCGAHGNVIDFLMKFERLEFVESIEELASIHGLEVPSEKTDALKEQVQQRRHQRYN 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L + +E F+ SLK+ + +YL +RG++ IE+F +G+A +L +H + Sbjct: 119 LYQWMEKLNAFYQKSLKDPAAYKARHYLAQRGLNDSTIELFSIGFALPGWSNLLDHFGHE 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 SE K + D + YDRFR R+ FPIR RG VIAFGGR +++ E KYLNS Sbjct: 179 NTSELKDAGMLVTSD---NGRIYDRFRERITFPIRDKRGNVIAFGGRVINQ-EMPKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG+ LY + A + ++ +++VEGYMDVL+L Q G++ V+ Sbjct: 235 PETDIFHKGRQLYGLYEAK----------LSQSDLKLLLVVEGYMDVLTLAQFGIRYAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA TE ++L+++ + +IV C+DGD G +AA++ ++ L +L G ++ F+ L G Sbjct: 285 SLGTATTEEHIQLMFRTTDQIVCCYDGDKAGRKAAWRVLETALPYLNDGRQLRFIFLPEG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+ +R GK AFE+ I ++ L+ N P+ RA+L IN + Sbjct: 345 EDPDTLLRSEGKVAFEQRIEQAQSFSAFLFDTVMLGIELNRPEGRAKLSSLALPLINQVP 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR Y Q + +L L + + K PS + ++ + + Sbjct: 405 GETLRLYLRQELGKKLGILEDHLLDRLL---------PKKGVSKMPSSKQLKPTTM---- 451 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 L+ LI +P + + L DI+ L+ L + Sbjct: 452 --------RVLIALLIQNPRLA-KMVPSLEDIQQARIAGLPLFIELLEHCLACPGLNTAH 502 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + E KQL++ + + + + R L Sbjct: 503 LLELYRG---KECQKQLEQLSAWGDMEFKEEKMIQIIFTDALNHLFDSILQQR-LEILIA 558 Query: 597 EIEK 600 Sbjct: 559 RARA 562 >gi|68535702|ref|YP_250407.1| DNA primase [Corynebacterium jeikeium K411] gi|68263301|emb|CAI36789.1| DNA primase [Corynebacterium jeikeium K411] Length = 661 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 133/670 (19%), Positives = 240/670 (35%), Gaps = 63/670 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + PI ++G+YV PF DEKTPSFH + G+ Sbjct: 7 RIPERDIEAIREQTPIEEVVGEYVQLKPGG----VDSMKGLSPFKDEKTPSFHVRPNHGY 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CFS GD FL + SF E+V+ A G + + +E+ + L+ Sbjct: 63 FHCFSTDQGGDVFKFLMLMEHMSFPEAVEACAERIGYRISYEGGRPGNREEPGTRRRLVA 122 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + A +F+ + +L ERG E F GYAP L +HL+QKG Sbjct: 123 ANKAAFEFYRKEFLGDAEGADVARNFLIERGFTMEHAEQFGCGYAPAGWDRLTKHLQQKG 182 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNS 236 F+ ++I AGL DRF RL++PIRS G VI FG R L + KYLN+ Sbjct: 183 FTFKEIEAAGLGR--MGKRGPIDRFHRRLLWPIRSVSGDVIGFGARKLFDDDRLGKYLNT 240 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET+L+ K K L+ A + + ++VEGY DV+++ AGV V+ Sbjct: 241 PETMLYKKSKVLFGIDQAKRNV----------VAKHQAVVVEGYTDVMAMHAAGVDTAVA 290 Query: 297 SLGTALTEYQLRLLWKLS-------PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 + GTA L L + I+ FDGD+ G +AA +A + Sbjct: 291 ACGTAFGAEHLAALRRFMLDDQFFRGEIIYTFDGDEAGQKAAMRAFEGDQQFSGR---SY 347 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G+DP G A +L+ +P+ + + + + + D R + Sbjct: 348 VTVAPGGQDPCDVRIKRGDAAVRELVASRIPMFEFVIRTLIADYDTASIDGRVHALRRIV 407 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ- 468 + IKD LR Y++ + + + R + + Sbjct: 408 PVLAGIKDDALRDEYARQAAGWVGWDNPNDVLDQVRKEARKSGGQRPKLELKTGAGAAGG 467 Query: 469 -------------------------SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + + + ++ + P + + Sbjct: 468 AGGSRAGAAGAAGTGSAGGPNLHVVKGMERPNPNDDYLEGPREVMKLALQEPQLASTIFD 527 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + + + + + S +R+ + + + ++ L Sbjct: 528 LMPPESFVHPTYVAMAEAVASLGGAANSNGGAGWIERIAAQMKDPMGAAVVSELAVEDLH 587 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 Y A+ + R + + +++ ++ ++ + E+ L + + Sbjct: 588 CLPERLP------YYADAIMARMQERWVGSEIADMKSRMQRMRPDLQKEEYNALFADVIA 641 Query: 624 VHIQIHQIES 633 + + Sbjct: 642 LEKYRRSLHE 651 >gi|260063732|ref|YP_003196812.1| putative DNA primase [Robiginitalea biformata HTCC2501] gi|88783177|gb|EAR14350.1| putative DNA primase [Robiginitalea biformata HTCC2501] Length = 658 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 168/663 (25%), Positives = 273/663 (41%), Gaps = 63/663 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I + + +IG +V + +N + PF DE+TPSF + K + Sbjct: 2 IARTTIDKVFDAARVEEVIGDFVQLKKSGSN-----FKGLSPFTDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + E+KE+ + ++ + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLARKYQIEVEETQRTDEEKEQASERESMLLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A DFF L + + Y ERG I F LGY PD + + +KG+ Sbjct: 117 SEFARDFFQECLWESESGKAIGLTYFKERGFSEDTIREFGLGYNPDQWSAFTDAALEKGY 176 Query: 179 SEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-K 232 E + + GL I D +DRF+ R++FPI+S G+V+ FGGRTLS + V K Sbjct: 177 QLEFLEKTGLTIVKPAADPAQPPRKFDRFKGRVLFPIQSMSGRVLGFGGRTLSSEKKVAK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE+ ++HK K LY + A + + LVEGY DV+ L Q+G++ Sbjct: 237 YLNSPESEIYHKSKVLYGIYHAKKAIAR----------EDVCYLVEGYTDVIQLYQSGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 NVV+S GTALT Q+RL+ +L+ +V+ FDGD GLRA+ + IDL L G V Sbjct: 287 NVVASSGTALTPEQIRLIRRLTVNVVVLFDGDAAGLRASLRGIDL---ILEEGLNVRVCT 343 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 GEDPDSF R + + A E + E+ + N P RAE + + I Sbjct: 344 FPAGEDPDSFARSHSRDAIEAYLKENSRDFIQFKTALLTEEAANDPIRRAETIRDIVSSI 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 I D+ R Y Q + + + R ++ + + GP + + Q Sbjct: 404 ARIPDRIKREVYVQECASLMGISEEVLFNTLAQMTRKAQREEARKPEPGPMEVVRQDP-A 462 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL--------------------------- 505 K+ + L E ++ L+ + +E + Sbjct: 463 AAKVDPQYEL-ERKIIEVLLLYGRESEEFEDLVLKENDEGELVLEPERSEVRVFEKIFLD 521 Query: 506 ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 +I + + L+ L + F + + GEL L + + Sbjct: 522 LQEDEIELSDARFRSLYYKLIEKLNSEPDFSVHRLTEEADAEFAGELSAILMDEEKYELH 581 Query: 563 WSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + + Q + L R L+ ++ E + Q + AE +I+ Sbjct: 582 HWERKDIYPKQKQDSLGQLVSETILSLRCYLIKKRIEALRGQTESRPGETNAEVLEEIIN 641 Query: 620 ILH 622 L Sbjct: 642 YLQ 644 >gi|320355020|ref|YP_004196359.1| DNA primase [Desulfobulbus propionicus DSM 2032] gi|320123522|gb|ADW19068.1| DNA primase [Desulfobulbus propionicus DSM 2032] Length = 596 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 165/625 (26%), Positives = 259/625 (41%), Gaps = 52/625 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I +IG++V+ R + + CPFH+EKTPSF N F++CF C Sbjct: 14 VRDAADIVQVIGEHVELKRSGS-----RFTGRCPFHNEKTPSFSVNPQGQFFHCFGCGEH 68 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIEVATDFF 128 GD SF+ F E+++ LA GV LP ++ +++ L E A + Sbjct: 69 GDVFSFVMKYHHMEFPEALKLLARKFGVDLPERPLSESEQARLRQLEKLYEANETAVLVY 128 Query: 129 HHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQKGFSEEKI 183 L++ K YL+ RG+ + AIE ++LG APD L + L KG + E + Sbjct: 129 QQCLRHPKWGKPARAYLERRGVPTAAIERYRLGCAPDPEQAGWSYLTDQLMAKGLTPETL 188 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 +AGL + YDRFR+R++FPI G+V+AFGGR L KY+NSPE+ +F Sbjct: 189 AQAGLAVRK-EQGGQYDRFRSRIMFPIVDMTGRVVAFGGRIL-GDGQPKYMNSPESPIFD 246 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + L+ ++K+ R ++VEG D+L L G+ NVV+ LGTALT Sbjct: 247 KSRLLFGLHQHREAIRKARR----------CLVVEGNFDLLLLSVHGIDNVVAPLGTALT 296 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L S ++L FD D GL+AA ++I L G LL G DPDSF+ Sbjct: 297 RSHIHSLRGYSDEVILLFDADAAGLKAAMRSI---PFFLAEGVEGRVALLPPGHDPDSFV 353 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G A +L+ + PL + + T + + LK + D R Sbjct: 354 REAGAEAVVELVDAARPLPEFAFDALVR-EHGLTLAGKNRIVSELKRLLAEAADAGQREL 412 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 ++L GY + K A + P+ QS S + Sbjct: 413 MIAHFSEKLGL--------APGYFQVPSKAAVPLAKPAPAPITPQS--------ASLSRQ 456 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++ LI +P +E + ++ + L PE++ + Sbjct: 457 EKQVVDFLILYPEYHEELRAAGLTALFRDSTAAWVIE-LVEHISAAGPSQPEQLLTTIDN 515 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + QL QV + E R+ + L + + R +++QI Sbjct: 516 ETIRAYIIQLLTQV------PSGIEPESDHARRTCDELLQWLHQEQQ-RRDGAALQEQIN 568 Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628 G AE L+ E+ + Sbjct: 569 LAQQHGNAELLMELLRRKQEIGKKR 593 >gi|69249284|ref|ZP_00604923.1| DNA primase [Enterococcus faecium DO] gi|258616540|ref|ZP_05714310.1| DNA primase [Enterococcus faecium DO] gi|289565070|ref|ZP_06445523.1| DNA primase [Enterococcus faecium D344SRF] gi|293563373|ref|ZP_06677822.1| DNA primase [Enterococcus faecium E1162] gi|293568033|ref|ZP_06679371.1| DNA primase [Enterococcus faecium E1071] gi|294614872|ref|ZP_06694767.1| DNA primase [Enterococcus faecium E1636] gi|294618227|ref|ZP_06697810.1| DNA primase [Enterococcus faecium E1679] gi|294622678|ref|ZP_06701640.1| DNA primase [Enterococcus faecium U0317] gi|314939476|ref|ZP_07846710.1| DNA primase [Enterococcus faecium TX0133a04] gi|314941107|ref|ZP_07848005.1| DNA primase [Enterococcus faecium TX0133C] gi|314949893|ref|ZP_07853195.1| DNA primase [Enterococcus faecium TX0082] gi|314951692|ref|ZP_07854735.1| DNA primase [Enterococcus faecium TX0133A] gi|314993961|ref|ZP_07859288.1| DNA primase [Enterococcus faecium TX0133B] gi|314996912|ref|ZP_07861913.1| DNA primase [Enterococcus faecium TX0133a01] gi|68194218|gb|EAN08743.1| DNA primase [Enterococcus faecium DO] gi|289163077|gb|EFD10924.1| DNA primase [Enterococcus faecium D344SRF] gi|291589254|gb|EFF21064.1| DNA primase [Enterococcus faecium E1071] gi|291592334|gb|EFF23948.1| DNA primase [Enterococcus faecium E1636] gi|291595507|gb|EFF26817.1| DNA primase [Enterococcus faecium E1679] gi|291597876|gb|EFF29006.1| DNA primase [Enterococcus faecium U0317] gi|291604634|gb|EFF34119.1| DNA primase [Enterococcus faecium E1162] gi|313588971|gb|EFR67816.1| DNA primase [Enterococcus faecium TX0133a01] gi|313591563|gb|EFR70408.1| DNA primase [Enterococcus faecium TX0133B] gi|313596156|gb|EFR75001.1| DNA primase [Enterococcus faecium TX0133A] gi|313600108|gb|EFR78951.1| DNA primase [Enterococcus faecium TX0133C] gi|313641278|gb|EFS05858.1| DNA primase [Enterococcus faecium TX0133a04] gi|313643735|gb|EFS08315.1| DNA primase [Enterococcus faecium TX0082] Length = 613 Score = 339 bits (869), Expect = 8e-91, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 4 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 59 FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 118 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 S E + +GL + + DRF R++FP+R+S+GQ I F GR L+ + Sbjct: 179 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 237 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + ++ V Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNRQEPQESQHTQVTRQET 465 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613 >gi|313158994|gb|EFR58371.1| DNA primase [Alistipes sp. HGB5] Length = 657 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 155/675 (22%), Positives = 281/675 (41%), Gaps = 67/675 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ + + I ++IG+YV R+ N Y ACCPFH+EKTPSF + SKG Y Sbjct: 2 IDRETVDRIYAAANIVDIIGEYVTLKRKGVN-----YQACCPFHNEKTPSFVVSPSKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ ++FL ++ E+++ +A G+ + + ++ + + L Sbjct: 57 KCFGCGKGGNAVTFLMEHENITYPEALKMVAKRYGIEVKEKEMTDEEVRRNDDRESMFAL 116 Query: 121 IEVATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 A D+F L + + + Y+ +RG+ I+ F LG+ P + + G Sbjct: 117 NGWAADYFADYLHHETEGMSVGMTYFRQKRGMADATIKKFGLGFCPAKGDRMSKDALAAG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNS 236 + +E ++ GL + ++ + YDRFR+R+IFP+ + G+++AFGGRTL ++V KY NS Sbjct: 177 YKKEFLVATGLSLQRESDGSLYDRFRDRVIFPVHNISGRIVAFGGRTLRTDKTVAKYQNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++ K + LY + A + F I+VEGY DV+S+ QAGV+NVV+ Sbjct: 237 PESEIYSKKRELYGLYFAKKAI----------QQLDFAIMVEGYTDVISMHQAGVENVVA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GT+LT Q+RLL + + I + +DGD G+ A+ + ID+ L G V VLL Sbjct: 287 SSGTSLTTEQIRLLNRFTKNITVIYDGDSAGIHASLRGIDM---ILKEGMNVRVVLLPEP 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF R + ++ I + R + P ++A L + I I Sbjct: 344 EDPDSFARTHTAAELQEYIRANEQDFLAFKARLLLQDAEGDPIKKAALIGDMVQSIAQIP 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK--------NARHRDQKGPSQRLMQ 468 D R Y + + I+E + + ++ + Sbjct: 404 DPIQRSVYIKECARIMDIDENILISEVARKRMSTTGDRETDEFVRRQTAQRRAEVREPEV 463 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-----------------ELADIRYD 511 + + + E L+ L+ + + + + + + Sbjct: 464 EFVKQVQAGSSVEALERELVKYLLKYGHCSFDFKEGRTMVACNVAEVIFMELDSDGLSFS 523 Query: 512 NNELQKLWSFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSAT 566 N K+ + + L D + LW Sbjct: 524 NPLYDKILATYREQWKLLGTGAEVPAHFFLNHPDPEVCNVSVDILTSDDNYVPSELWRRK 583 Query: 567 T---EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL-- 621 + + + G +A+ LY + +++ +E + ++A + E+ +I L Sbjct: 584 EIHIDTDAEMLAVGVPKAVTLY-KSKVIEGYIKEWQAKLADESLT--EEQQNEVIQRLAG 640 Query: 622 -----HEVHIQIHQI 631 + ++ ++ Sbjct: 641 FNKVKVTIARKLQRL 655 >gi|163751573|ref|ZP_02158795.1| DNA primase [Shewanella benthica KT99] gi|161328581|gb|EDP99734.1| DNA primase [Shewanella benthica KT99] Length = 575 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 177/625 (28%), Positives = 298/625 (47%), Gaps = 56/625 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI +L+ I I +LI V + N ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINELVARIDIVDLIDVKVPLKKAGKNHS-----ACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ FI++++ LA G+ +P +++++ + DL + Sbjct: 56 FYHCFGCGAHGNVIDFVMEYDRLDFIDTIEELAGQLGLEVPREQGTGKRRDEGLSRDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A+ F L+ +DK+ YLD RG+ IE F +G+AP+ L RQ Sbjct: 116 LMEEASRHFQSQLRQHKDKQKVVDYLDHRGLSEKVIEDFHIGFAPEGWDGLLSRYRQSQD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++K++ AG++I+ DN YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 SQDKLLTAGMVIENDNGRR-YDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG LY + + R +++VEGYMDV++L Q V V+SL Sbjct: 234 TPIFHKGNELYGLYELKQRHRDPQR----------VLIVEGYMDVVALAQFDVDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q +LL + + ++ C+DGD G+ AA++A++ L L PGN+V F+ L +GED Sbjct: 284 GTATTAEQFQLLLRTAKEVICCYDGDRAGVEAAWRALETALPLLKPGNQVKFMFLPQGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD+ +R GK AFE I ++ L + L++ + + L + I ++D Sbjct: 344 PDTMVRQVGKEAFESQIDDAKALPEFLFETLAQRHGADKGT----LAKQAISLIEKVQDI 399 Query: 419 KLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L+ + + +L + + +Y + +++ KG L Sbjct: 400 VLQSLLLENLAYKLGMNGADELRRKLGFSSKYQGQTLQNKALKGRGTPL----------- 448 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + L+ HP + + L L+ + + ++ Sbjct: 449 -------RLAIALLVQHPML----GEGLPMQ----PALKHIKMAGIDLLIHLLDITRVQV 493 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E + + L + +++Q +++ L ++ + + ++ +E Sbjct: 494 KN---SAQLLEQYRDAPQLGTLKKLTRWDHQVADENLQQEFRKTL-IWLNNQYIEQRYQE 549 Query: 598 IEKQIAQVTAKGEAEKTAILISILH 622 + + Q K E + + LI+++ Sbjct: 550 L--SLKQNHTKEERIQLSKLIAVIQ 572 >gi|226939394|ref|YP_002794467.1| DnaG [Laribacter hongkongensis HLHK9] gi|226714320|gb|ACO73458.1| DnaG [Laribacter hongkongensis HLHK9] Length = 584 Score = 339 bits (869), Expect = 9e-91, Method: Composition-based stats. Identities = 188/602 (31%), Positives = 279/602 (46%), Gaps = 48/602 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+DFI LL + I +++ +YV + DY ACCPFH EK+PSF + +K FY Sbjct: 2 IPQDFIDQLLSRVDIVDVVERYVPLKKAGR-----DYMACCPFHKEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDLI 118 +CF C G +SFL G F+++V LA G+ +P V + ++E + L Sbjct: 57 HCFGCGAHGTAISFLIEHGGYGFVDAVSELAQQVGLTVPQVAQEAAREEAQRRQTAETLH 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ A F+ LK + YL RG+ F LG+AP R +L+ Sbjct: 117 DVMLEAARFYKRELKRS--TLAIDYLKRRGLTGEIAARFGLGWAPAGRTALQGVFPDYLD 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++EAGL+I D+ + YDRFR R++FPIR RG+VIAFGGR L KGE KYLNSPE Sbjct: 175 DR--LLEAGLVIRRDDGSR-YDRFRERVMFPIRDVRGRVIAFGGRILDKGEP-KYLNSPE 230 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ LY F +++ R +++VEGYMDV++L Q GV V++L Sbjct: 231 TPLFEKGRELYGLFEGREAIRERNR----------VLVVEGYMDVVALAQHGVPYAVATL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T + L++ + R+V CFDGD G RAA++A++ VL L G RV+F+ L D Sbjct: 281 GTSTTSTHVHKLFRHADRVVFCFDGDKAGQRAAWRALENVLPELRDGKRVDFLFLPVEHD 340 Query: 359 PDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDSF+R YG A E I + SLPL L + ++ + RAEL K + +K Sbjct: 341 PDSFVREYGAEALEDWIQQRSLPLSVYLTQELAARVDLDSDEGRAELLNLAKPLVMQVKT 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L + + + + +K+ + G + Sbjct: 401 PALAVLLRKKLAELARLSLDDLDRLWGLRKGLGRKSGPPPVRGGHRSEMSPV-------- 452 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L+ L+ P + + E + E + L L + Sbjct: 453 -------RWLIRALLLEPVLAEAV--EWPAVESLAGEARTLAE-LAELIQNGGVTGSVTL 502 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT--EANIVDVRQGYQQALALYKRFRLLSRQK 595 +RL E GE L L + +AT + + V Q Y Q +R L+R+ Sbjct: 503 QERLRETALGEQLDPLWATLLADPAATATPLRDEFVAMVEQFYGQL--NRERVEQLTRRA 560 Query: 596 EE 597 E Sbjct: 561 AE 562 >gi|257063659|ref|YP_003143331.1| DNA primase, catalytic core [Slackia heliotrinireducens DSM 20476] gi|256791312|gb|ACV21982.1| DNA primase, catalytic core [Slackia heliotrinireducens DSM 20476] Length = 618 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 165/646 (25%), Positives = 278/646 (43%), Gaps = 47/646 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P D I+ + + ++G V +R D+W CCPFH+EKTPSF + + Sbjct: 3 SIPEDDIRKVREASDLVAIVGDRVPLRQRGR-----DFWGCCPFHNEKTPSFKVDPNTQL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++CF C GD +SF+ L F ++V+ LA AG+ + D + + L + Sbjct: 58 WHCFGCGEGGDVISFVMKLDDIGFADAVRELARRAGIQITE-DERERAVRGKKARLKEVC 116 Query: 122 EVATDFFHHSLKNARDK---RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E F+H L +RD+ YL R + + + LG+AP R +L HLR GF Sbjct: 117 EATAAFYHTQLMRSRDEGAASARSYLGSRDLGGTIPKTWNLGFAP-GRGALVRHLRSLGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++++I+A + + + + DRF NR++FPIR + G IAFGGR + KGE KYLN+ E Sbjct: 176 TQQQMIDANVALISNRTNKLQDRFYNRIMFPIRDAEGDTIAFGGRVIGKGEP-KYLNTQE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHK + L+ A + S+ I+VEGY DV+ L +AGV+NVV++L Sbjct: 235 TALFHKSQVLFGLDMAKGAMA----------STGIAIIVEGYTDVIVLHEAGVKNVVATL 284 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVL 352 GTALT +R L +IV FDGD+ G RAA +A ++ + Sbjct: 285 GTALTAQHVRQLSRHAKNKIVYLFDGDEAGQRAADRAARFVDESMLPEAGRKQVGLYACT 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L DP F++ G A + L+ ++ PL+ R+ R E++ + + + Sbjct: 345 LPDNLDPADFVQQRGADALKVLLDDAKPLMRYAIDRKLAARDLTDYAEKSRVLPEVIELL 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG--RYWKKNARHRDQKGPSQRLMQSS 470 I+ + Y + DRLQ + + + R + A Q+ + Q + Sbjct: 405 APIRQSLMAQEYVNYLADRLQVDSRVIQDKLANARVPRPMGEAADGPAQQPAAPANAQPA 464 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 ++ E L HP I + ++A + + + L + E Sbjct: 465 FELSSKERERLRIEQEFLALAATHPQIGIQFAAQIARTMWRSRNHGAIAEGLLTMLAEYP 524 Query: 531 YFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 E+ L G +L + AT + + +R Q L++ Sbjct: 525 QATAAELITALDAACPGSRSVLTSASSYDVSDPVRLATFLSEELAIRDMEQNILSMN--- 581 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 EI+ + ++ IL + + + ++ + Sbjct: 582 -------AEIK------DSSLTDDERNILYASVVALQKELAALRRS 614 >gi|293556715|ref|ZP_06675278.1| DNA primase [Enterococcus faecium E1039] gi|291601047|gb|EFF31336.1| DNA primase [Enterococcus faecium E1039] Length = 613 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 281/642 (43%), Gaps = 43/642 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+ + I +IGQYV + N Y CPFH+E+TPSF + K Sbjct: 4 RIPQEVIETVRSQTNIVEVIGQYVQLKKSGKN-----YLGLCPFHEERTPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 ++CF C G+ +FL L G SF E+V ++A +PL ++ E L Sbjct: 59 FHCFGCGKGGNVFTFLQELEGLSFPEAVVKVADFEQIPLEDQWRQRTIAVQNPESATGKL 118 Query: 118 IRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I E A + +HH L + YL RG+ IE F +G+AP+ R L++ + + Sbjct: 119 IAAHEKAAEIYHHMLLHTKAGQPALEYLQSRGLSLELIEEFNIGFAPNERSFLQQVFKNE 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESV 231 S E + +GL + + DRF R++FP+R+S+GQ I F GR L+ + Sbjct: 179 SISNELLERSGLFV-THDDGRMSDRFYQRVMFPLRNSQGQTIGFSGRWLAPEKGQEKDQP 237 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+K + L+N A + ++K + I+L EG+MDV++ QAG+ Sbjct: 238 KYLNSPETELFNKRQVLFNLDKARSDIRK----------NGEILLFEGFMDVIAAWQAGI 287 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + ++S+GT+LT Q++ + KL+ +V C+DGD+ G A + I+L+ + ++ V Sbjct: 288 KTGLASMGTSLTAQQIQQMEKLTKELVFCYDGDNAGFEATNRGIELLRQNSR--LALSVV 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKN 410 ++ DPD ++R YG+ +F++L+ V R + ++ E L Sbjct: 346 VVPEKLDPDEYLRKYGEASFQELVAHGRETVFTFKSRYLKQGKNLDNEKDKIEYLEELLV 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + + Y + Q + + R ++N + + +Q Q + Sbjct: 406 ELSRVVSPIEQDMYLSQLSTEFQIGRETIQKQLRDLRRTNQQNLQEPQESQHTQVTRQET 465 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K + + E LL ++ + + ++ ++ +++ + + Sbjct: 466 ARKKRPLTQVEKAEQILLYRAFKEVSVRNILKER--EFQFIHDAYAEVYFLFDAYVSQHY 523 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F E L + L+ +++ E++ ++ Q L Sbjct: 524 EFNLAEFLDFLQDENLRRLVVEIE-------YLPVAEESSPREI-----QDLLDVISKSG 571 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L+ + ++ + G + L + + Q+ Q + Sbjct: 572 LADEITLKKQMQQEARRTGNKQLELELTIEIINLTKQLKQAK 613 >gi|330821205|ref|YP_004350067.1| DNA primase [Burkholderia gladioli BSR3] gi|327373200|gb|AEA64555.1| DNA primase [Burkholderia gladioli BSR3] Length = 626 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 169/658 (25%), Positives = 277/658 (42%), Gaps = 67/658 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G++V + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPSSFLQDLLNRVDIVDVVGRFVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---------------DPKI 107 +CF C G + FL G SF E+VQ LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLSFPEAVQELAQSVGLTVPHEPSTRGGGGGGYGGEGSSLP 116 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + + T L +++ A+D++ L+ YL +RG+ F LGYAP+ Sbjct: 117 AASKSVTTALTDVMQTASDYYRKQLRG--ATNAIQYLKKRGLTGEIAMRFGLGYAPEGWQ 174 Query: 168 SLREHLRQKGFSEEK---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 +L ++ D +A YDRFR R++FPIR+ +G VI FGGR Sbjct: 175 NLETAFEDYRADTLVDAGLVIVSEKTDAQGTARRYDRFRERIMFPIRNVKGNVIGFGGRV 234 Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 L GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV+ Sbjct: 235 LDSGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------DQKYALVVEGYMDVV 283 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 +L Q G N V++LGTA T ++ L + + +V FDGD G RAA +A++ L H Sbjct: 284 ALAQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSFDGDAAGRRAARRALEACLPHAAD 343 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 + F+ L DPDS++R +G AF + ++PL L + + P+ RA+ Sbjct: 344 NRTIRFLFLPTEHDPDSYVREFGAEAFSDQVRRAMPLSQFLLNEAIAGKELDQPEGRAKA 403 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 K + + LR DRL F++ R Sbjct: 404 LFEAKPLLQALPANALRAQIMHMFADRLNIPFEEVAGLSDVDARIA-------------- 449 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 ++ + E L L+ +P I+ ++ +L+ + + Sbjct: 450 -APARQAPARADRRRVTDHEKRTLRNLVMYPRIVALLDEDDVATLRGLPRNGELFDEVLA 508 Query: 525 DFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGLWSATTEANIVDVRQ 576 E L + + + E+ +++ D VR+ L S EA VR+ Sbjct: 509 ISRELGNAAEFRLLSDVLRNTTNAETYDEIFREILDYDENVRELLLQSPEDEAGQEAVRE 568 Query: 577 GYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + +A L R+ + + ++ +Q + E + L ++ ++ Sbjct: 569 RERIAGEELKAAVLKMRYDACNDRLNQLSRQ--STHSPEELTELMALNRARTDMKAKL 624 >gi|94971323|ref|YP_593371.1| DNA primase [Candidatus Koribacter versatilis Ellin345] gi|94553373|gb|ABF43297.1| DNA primase [Candidatus Koribacter versatilis Ellin345] Length = 640 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 162/651 (24%), Positives = 284/651 (43%), Gaps = 53/651 (8%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P DF DL I +IG+YV + +Y CPFH+EK+PSF + S+ F++ Sbjct: 21 PGDFAYDLKQQADIVRVIGEYVQLRKAGAQ----NYAGLCPFHNEKSPSFSVHQSRQFFH 76 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRL 120 CF C GD +F+ + +F E+V+ +A GVP+P P+ ++ K++ L+ Sbjct: 77 CFGCGASGDVFTFIQKIENITFPEAVRSIAQKLGVPMPKVEYASPQEAREAKMRGALLDA 136 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+A +F L+ YL RG+D+ +E F++G+AP+S + LR+ ++ + E Sbjct: 137 NELACAWFQEQLRKPDAAHAREYLKSRGLDAETVEKFRIGFAPESGFLLRDRMKGEFNEE 196 Query: 181 EKIIEAGLLIDGDNSAT----------SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 D + Y +FRNR++FPIR+ +G+VIAF GRTL+ E Sbjct: 197 ILRESGLFSWKEDATRDSESAKSAPSALYAKFRNRIMFPIRNEQGKVIAFTGRTLATDEK 256 Query: 231 --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNSPET ++ K + L+N A ++ + ILVEG MD +SL + Sbjct: 257 SGPKYLNSPETAIYSKSRVLFNLNLAKEAIR----GSKDAPGLGYAILVEGQMDCISLYR 312 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 V NV+++ GTA TE+Q +LL + + ++V+ FD D G AA +++ L + ++ Sbjct: 313 EDVHNVIATSGTAFTEFQAKLLGRFTKQVVVNFDPDTAGAAAAERSLAL---LVSEDFQI 369 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + L G DPD +IR G+ A+ + S D L R + TP+ + + +L Sbjct: 370 RVLTLEPGFDPDLYIRKKGREAYAYALKHSQKYFDYLIDRARKQYPTGTPEGKLKAVNYL 429 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I + + +R + I +LQ E + Sbjct: 430 LPHIQRLSSKLVRDEIAMDIAHKLQIDSTVLKEELRHVAGSRTATS-------------- 475 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 VK + + + E L+ L + + ++ D +++ L ++ + Sbjct: 476 ---VKASAAPQITPIEKMLIRALASSNQLAKDPVSSREGQDLDFEAARQVHYVLANETLH 532 Query: 529 QKYFLPEEIHQRLC--ERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 I L E G + L + DR+ L T + + Sbjct: 533 AGLQTERLIAALLKAVEDGSDPMTLPLGEGDRRTLATILMGDTETLTPEAMEGAFAS--- 589 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R R + ++ ++ +I KG++ L ++ +I +++ + Sbjct: 590 --LRLRRMKARRSDLVVEITAAERKGDSAALGRLSLEKMQLDREIRELDEE 638 >gi|312143991|ref|YP_003995437.1| DNA primase [Halanaerobium sp. 'sapolanicus'] gi|311904642|gb|ADQ15083.1| DNA primase [Halanaerobium sp. 'sapolanicus'] Length = 623 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 163/635 (25%), Positives = 279/635 (43%), Gaps = 42/635 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y DFI +L + I +L+ YV+ + Y CPFH EKTPSF N F Sbjct: 27 RYSDDFIDELKTNADIVDLVSDYVELQKSGN-----RYKGLCPFHSEKTPSFFVNPDNNF 81 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD ++F+ + +F E+++ LA +G+ LP + ++ K + L L Sbjct: 82 YHCFGCGAGGDLINFVMEIENLTFAETIKVLAERSGMELPDLSDAQRQRYKEREKLFALN 141 Query: 122 EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A F+++ L K+ YL R I+ I+ F++GYA D L L+++ FS Sbjct: 142 NLAAKFYNYILLEKEIGKKALEYLKNRDINESDIKQFQIGYAADEWQLLLNFLKKRNFSL 201 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK---YLNSP 237 + I +AGL I + + YD+FRNR+IFPI ++RG+VIAFGGR L + YLNSP Sbjct: 202 DLIYKAGL-ITKGKNNSYYDKFRNRVIFPIYNNRGEVIAFGGRILETEAAEYGPKYLNSP 260 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K KNLY A + ++K + I++EGY D++ + G +N ++S Sbjct: 261 ETAIFSKKKNLYGLHLAKDSIRKK----------NSCIIMEGYTDIIQAHKNGFKNSIAS 310 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA TE Q +L+ + + + + +D D G A + +D+ G V + L G Sbjct: 311 LGTAFTEEQAKLIKRYAEKAYIAYDADTAGNMATLRGLDI---LSDAGIDVKVIQLDEGN 367 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +R G F + +L LVD + +++ + P R ++ + I I D Sbjct: 368 DPDDLLREEGAEIFFDHLDSALSLVDFKIEMIIQDKDLDEPGVRLKVLKSIIKLIAEIDD 427 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R Y + ++ + E + K RD + + + L Sbjct: 428 ELKREIYLERAAEKTSFKTEVLSKEVKKEVKKNKSRNYRRDIEKINSASKKVDL--NTQI 485 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E +L I + +E + L + Q L + K Sbjct: 486 SYYQKIEEQILAYYITQAELREEISEILTPDDFTGRAAQ-----LADLLFQGKVISASVK 540 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ + + EL + + + + + LA Y +S+ KE+ Sbjct: 541 NESIKDELDDELFS-----YWTEIIVKQKSGLSEERILE-----LAEYISSYKISKSKEK 590 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 I + + +K +++ +++ I + + Sbjct: 591 ICSYL--ANKNFDLDKLNTILTTFQKMNYNIERRD 623 >gi|88858405|ref|ZP_01133047.1| DNA primase [Pseudoalteromonas tunicata D2] gi|88820022|gb|EAR29835.1| DNA primase [Pseudoalteromonas tunicata D2] Length = 583 Score = 339 bits (868), Expect = 1e-90, Method: Composition-based stats. Identities = 150/630 (23%), Positives = 274/630 (43%), Gaps = 58/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI + + DY ACCPFH+EK+PSF + K F Sbjct: 4 KIPRSFIDDLLARTDIIDLIDNKIGLKKTGK-----DYQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTD 116 Y+CF C G+ +SF+ F+++++ LAA + +P + + + Sbjct: 59 YHCFGCGAHGNAISFIMEYEKLEFVDAIEELAANLHLEVPREQTAGQSSAPQVSAEQKRS 118 Query: 117 LIRLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ A++F+ H LK+ ++ YL RG+ ++ + +GYAP L + L + Sbjct: 119 DYDLMLQASNFYQHQLKHHQNSADVISYLKGRGLSGQTVKKYMIGYAPTEWDGLCKQLAR 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 ++++ + L + +D FR+RL+FPIR RG+VIAFGGR L KYLN Sbjct: 179 TKDQKQQLTDLKLASEKTPGRQ-FDFFRDRLMFPIRDKRGRVIAFGGRVLQGDNGPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKG LY + A +K + I++VEGYMDV++L + G++ V Sbjct: 238 SPETRIFHKGFELYGLYEAKQAFKKL----------TQIMVVEGYMDVVALSEQGIEYAV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T ++ L++ + +++ C+DGD G AA++A++ L +L G + FV L Sbjct: 288 AALGTATTSEHMQTLFRATDKVICCYDGDRAGKDAAWRALENALPYLNNGKALLFVFLPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDS ++ GK FE+ + ++ +L++R + T +A+L I + Sbjct: 348 GEDPDSLVQKEGKALFEQRLEQASDFTKVLFERLSLELDITTDAGKAKLMSLALPMIEKV 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + + + + ++ + + ++ + Sbjct: 408 PSDFYQENLLEKLARLIGRTREQLNQKIKNPRQQQSLKSKFKMTPM-------------- 453 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ HP + + + L L+ L + ++ Sbjct: 454 ---------RIAIGLLLQHPQLANSIPYAPELVELNLPGL-ALFKQLQALCLKHNQINTG 503 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 +I + E + L L + + + + ++ + + L+ + Sbjct: 504 QILELYRESSDFKALSMLAGW---------QHQIDEGQLEEYFKNTFK-FIEDQCLNHRL 553 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVH 625 E + I T ++ + + Sbjct: 554 ETLL--IKDKTQGLNKDERLEYSLLTQALK 581 >gi|303238089|ref|ZP_07324629.1| DNA primase [Prevotella disiens FB035-09AN] gi|302481724|gb|EFL44779.1| DNA primase [Prevotella disiens FB035-09AN] Length = 643 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 156/652 (23%), Positives = 272/652 (41%), Gaps = 55/652 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + +L I ++I +YV + Y CPFHD+ TPSF N +KG Y Sbjct: 2 IDRPTVDRILEAADIVDVISEYVTLRKAG-----VSYKGLCPFHDDTTPSFSVNPAKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G + FL ++ E+++ LA G+ + + E+K E + + + Sbjct: 57 KCFACGEAGSVVKFLMQYDQLTYPEALRVLAKKYGIEIKERELTSEEKQLENERESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++FH +L+N D + Y RG IE F+LG+ + R + G+ Sbjct: 117 NEWAANYFHETLRNNPDGQAIGMQYFRSRGFRDDIIEKFQLGFCLNGRQDFANAALKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ GL + +N DRF R+IFP S G+VIAFGGR L KG S KY+N Sbjct: 177 KKEFLVKTGLCFERENGDIL-DRFNGRVIFPWVSVSGKVIAFGGRLLDSRTKGISQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP + ++ K LY + A + K + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPGSEIYQKDHALYGIYQAKKAIGKF----------DLVYMVEGYTDVVSMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ YQ+++L + + IVL +DGD+ G AA + D++L G V +L+ Sbjct: 286 ANSGTALSTYQIKILRRFTSNIVLLYDGDEAGQHAALRGTDMLLSE---GMNVKVLLIPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD R F K I ++ + + + I I Sbjct: 343 GKDPDELARTLTAEQFRKYIDDNQTDFIVFKINVLLQGVTDPVKRSEA-INSIVQSIAVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQRLMQSSLVKG 474 KD LR Y + R I + + + ++ + + ++ + L Sbjct: 402 KDPILRDTYLRECAHRTGMKESTLIRQMNRFIYNDKEQERKEKVREAEQTQQDAQPLRPA 461 Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYDNN 513 ++ S E L+ ++ IL++ E L ++ + N Sbjct: 462 TPMQQASKVETMLVQAIVRDGEKIILRDIENEETGEKISLNVAQYIAYDLGLDNLSFANP 521 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + ++ + E + L S + + D Sbjct: 522 MSIQILTEAVEHSNDEGFKAEEYFTKH--SDIQISTLAINLSVENFHLSQSMQVKESEED 579 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 +R + Y R + +E++ + Q + + EKT ++ + E+ Sbjct: 580 LRDRIMHLILDY-RMDYVEHHLKELQTNLLQ---EKDLEKTMNMMKEIKELQ 627 >gi|41408228|ref|NP_961064.1| DNA primase [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396583|gb|AAS04447.1| DnaG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 650 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 135/647 (20%), Positives = 241/647 (37%), Gaps = 37/647 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + I ++G YV R CPFHDEK+PSFH + G + Sbjct: 21 IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD +FL + SF+E+V+ LA G + P + ++ LI Sbjct: 77 HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ +L++ YL ER D+ A F G+AP +L +HL++KGF Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEF 196 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+PE Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 GTA + L +L +L D A+ + + Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP G A L+ PL + + ++ + R + Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469 IKD LR Y++ + + + + A R + Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGARVSRRAEQSAAPA 484 Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + L + + +PA+ + L + + + + + + Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + +R L L ++ + + Y + + Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645 >gi|255037124|ref|YP_003087745.1| DNA primase [Dyadobacter fermentans DSM 18053] gi|254949880|gb|ACT94580.1| DNA primase [Dyadobacter fermentans DSM 18053] Length = 674 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 170/679 (25%), Positives = 284/679 (41%), Gaps = 73/679 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ + I ++G +V ++ N Y ACCPFH+EKTPSF+ N + Sbjct: 1 MRINPETVERIKHAADIVEVVGDFVSLKKKGAN-----YSACCPFHNEKTPSFNVNPVRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLI 118 Y CF C GD + F+ + G + E+++ LA + + + ++ + L Sbjct: 56 IYKCFGCGAAGDSIKFVMDIDGIGYGEALRYLAGKYNIEVEEEELTDEETLRQNARESLY 115 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ A +++ H L ++ + + Y ERG S + F+LGY+ D+ S + +K Sbjct: 116 IILNFAKNYYQHQLHHSDEGQAIGLSYFRERGFTSEIRKKFELGYSLDNWDSFSKEALEK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATS-YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYL 234 G+S E + AGLLI + S T+ YDRFR R+IFPI + G+ IAFG R L + KYL Sbjct: 176 GYSAEILERAGLLIHKEGSHTAGYDRFRGRVIFPIHNIAGKTIAFGARILKTDKNQPKYL 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET ++HK + LY + A N +++ LVEGY DV+SL QAG++NV Sbjct: 236 NSPETEVYHKSEVLYGIYQAKNAIRQL----------EHCYLVEGYTDVISLHQAGIENV 285 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S GT+LT Q+RL+ + +P I + +DGD G++AA + +DLVL G VN VL Sbjct: 286 VASSGTSLTVEQIRLIGRFTPNITILYDGDMAGIKAALRGLDLVLEE---GLNVNVVLFP 342 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 EDPDS++R G AF+ + + + N P + A + + N I Sbjct: 343 DNEDPDSYVRRVGAEAFKAHLKSASKDFITFKTEILLQDAGNDPFKLAAVIQEVVNSIVK 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D R + + ++ Q ITE + R + + S+ +G Sbjct: 403 IPDAIKRQVFFHRTSEMMRVDEQMLITEGNKLLRKQHSAKPAERPRQSNAGGQGSAGTRG 462 Query: 475 KLSKKP--------------------------------------SLREAALLLTLINHPA 496 P +E A + L+ H A Sbjct: 463 PEFDGPPDLDALFSDGFGPFGGEPDDNPFVPTEHAPEAFQRTKLHYQEEAFVRLLVVHGA 522 Query: 497 --------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + Q ++ I + L + +F + + Q Sbjct: 523 RELEPTITVCQYVLGQIEGIELKDPVYSHLLNLFRENFGKNNVLTTDYFLQHHEAEIRNL 582 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA---LALYKRFRLLSRQKEEIEKQIAQV 605 ++ L ++ + LW E + + L + + + + + +AQ Sbjct: 583 TIEWLTQKHELSELWKEKYEIYVPFETDVLDRTAFNNILRLKKAFVEEKMKTCIQNMAQA 642 Query: 606 TAKGEAEKTAILISILHEV 624 E + + Sbjct: 643 KTGEEQDAIMNEYQFYKGI 661 >gi|320533870|ref|ZP_08034452.1| DNA primase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133896|gb|EFW26262.1| DNA primase [Actinomyces sp. oral taxon 171 str. F0337] Length = 687 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 145/684 (21%), Positives = 263/684 (38%), Gaps = 72/684 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I+ + + +++G++V G CPFHDE+TPSFH G++ Sbjct: 21 IRREDIEAVRERARLEDVVGEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYW 76 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119 +CF C GD ++F+ + F E+V+ LA GV L + ++ + L+ Sbjct: 77 HCFGCGEGGDVITFIEKINHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMD 136 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F L + +L RG D HA F +GYAP L +LR G++ Sbjct: 137 ANRLAEAWFREQLATPEAQPGRDFLTARGFDRHAAAHFGVGYAPAGWDHLTRYLRSAGYT 196 Query: 180 EEKIIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 E +++++GL G + YDRFR RLI+PIR G + FG R L + + KYLN+P Sbjct: 197 EAELVDSGLCSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTP 256 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK + LY A + +S R I++VEGY DV++ +GV V++ Sbjct: 257 ETPVFHKSQVLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVAT 306 Query: 298 LGTALTEYQLRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDL 337 GTA +R++ + ++ FDGD G +AA +A Sbjct: 307 CGTAFGADHVRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAE 366 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 + + G DP G T +L+ +PL + + + + +T Sbjct: 367 DQRFAT---QTFVAVDPGGLDPCDLRMKEGDTGIPRLLSRRVPLFEFVIRTSLSHLDLDT 423 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + R + I+D+ L+ Y++ + L + GR + + R Sbjct: 424 SEGRVRGLRSAAPVVAGIRDRALKREYTRRLAGWLGLPDAEVHAAVQAAGRRGAQPSAAR 483 Query: 458 DQKGPSQRLMQSSLVK-----GKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYD 511 + P+ ++ E L +I P E+ + Sbjct: 484 GGQWPTDETAGPDAAAPVRGLPPVTDPVEQLEREALAVIIQFPVAAHHAGADEMGADSFG 543 Query: 512 NNELQKLWSFLFSDFV-------------------EQKYFLPEEIHQRLCERGFGELLKQ 552 + ++ + + E + Q++ + + Sbjct: 544 QLTHRAVYEAVAAAGGTAEVLGLVQQAVSAGTGEQEAQRRATLRWLQQVRDGAIDLVEAA 603 Query: 553 L-DRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 + + V L + VD + Y + + ++R+ E+ + +++ + Sbjct: 604 ITELAVAPLPLPTIRGRGTEVDASGLERYAKGVLGSLAVMGINRRLVEMRSRHRRMSPQ- 662 Query: 610 EAEKTAILISILHEVHIQIHQIES 633 E L S + + + QI Sbjct: 663 -EEGYRELFSQIAALEQRRMQIRQ 685 >gi|160871626|ref|ZP_02061758.1| DNA primase [Rickettsiella grylli] gi|159120425|gb|EDP45763.1| DNA primase [Rickettsiella grylli] Length = 585 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 171/596 (28%), Positives = 274/596 (45%), Gaps = 46/596 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++FI +LL + I LI V ++ N Y ACCPFH EKTPSF K FY Sbjct: 6 IPQEFINELLARVDIVQLIDARVPLRKKGKN-----YIACCPFHSEKTPSFTVTPEKQFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C + G+ +FL SF+E+V LA G+ +P + ++ K +L L+E Sbjct: 61 YCFGCAISGNAFNFLMDYEKLSFLEAVSILAESLGMEIPHAAKQ-QEVYKDSANLYTLLE 119 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ + + ++K + YYL +R + + F+LGYAP +L + ++ E+ Sbjct: 120 EVAQFYAN--ERQQNKTVRYYLKQRNLSDEIMTQFRLGYAPLGWDTLLKAFKK---ETER 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ GLLI YDRFR+R++FPIR +G+VI FGGRT+++GE KYLNSPET+LF Sbjct: 175 LLTVGLLIKKSKGQGYYDRFRDRVLFPIRDRKGRVIGFGGRTVTQGEP-KYLNSPETLLF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKGK LY + + + R I++VEGYMDVL+L QAG V++LGTA+ Sbjct: 234 HKGKELYGLYEVFQHNRHVER----------ILVVEGYMDVLALFQAGFPFAVATLGTAM 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + QL L + I+ CFDGD G +AA++ ++ L L G F+ L GEDPDSF Sbjct: 284 SRDQLSRLMSHTQEIIFCFDGDSAGKKAAWRVLEQSLALLTDGYIFRFLCLPHGEDPDSF 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ G F + ++ L + L+ + +A L I + ++Y Sbjct: 344 IQKKGADEFMTFMEQAQSLTEFLFSGLLAQVDITQLEGKARLAKLAVPLIEKVTQGIMQY 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + + + K + + Sbjct: 404 KLFEQLARLVNIDVMTLKKITTHTTNHPLKTMQKKINPVSKVNRFSPM------------ 451 Query: 483 REAALLLTLINHPAILQEQYQE----LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + LI P I Q + L ++ ++ L LFS +Q + Sbjct: 452 --RLAIALLIQFPHIAQSLSDKQCQILNTLKLPGSD---LLVQLFSVIKQQPELTSAMLL 506 Query: 539 QRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ++LKQL + + +A D+ + ++++ + LL + Sbjct: 507 EYWRDDEVHYKILKQLMGYSIT--IPKSGVQAEFDDLLKFLKKSVIENQIDNLLQQ 560 >gi|223558007|gb|ACM91013.1| DNA primase [uncultured bacterium URE4] Length = 658 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 166/672 (24%), Positives = 292/672 (43%), Gaps = 67/672 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++ ++ +L + +++G +V RR + WACCPFH+EKTPSFH S+G Y Sbjct: 2 IPQETVQLILDTARVEDVVGDFVTLKRRGS-----SLWACCPFHNEKTPSFHVEPSRGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 CF C G + F+ S+ E+++ LA + + + + L+ + Sbjct: 57 KCFGCGKSGTAVGFVMEYEKLSYTEALKYLARKYHIEVKEKEESAEDIAARQRNESLLAV 116 Query: 121 IEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A DF+ L + + Y RG++ I + LG+AP S+ +L E +++G+ Sbjct: 117 SEFAFDFYKDQLATDEGRAVAVQYFHSRGLEDETIAKYGLGWAPKSKNALTEAAKKEGYK 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 +E ++E GL D + +DRF +R++FPI S G+VIAFGGRTL +SV KY+NS E Sbjct: 177 DEYLLETGLCAQWDTDGSLHDRFYDRVMFPIHSVSGRVIAFGGRTLFTDKSVAKYVNSKE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + ++ K ++LY + A + + + + LVEGY+DVLS+ Q G+ NVV+S Sbjct: 237 SEIYVKSRSLYGIYFAKSAISR----------ADKCYLVEGYLDVLSMHQLGITNVVASS 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT Q+RL+ + + + + +DGD G+ AA + IDL L G V VL+ G+D Sbjct: 287 GTSLTVEQIRLIKRFTENVTIMYDGDPAGIHAALRGIDL---ILKEGMNVKVVLIPDGDD 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS+ R + E I + + N P +RA L + + + I D Sbjct: 344 PDSYARKHTLEEVEAFIAANEQDFIAFKADLLLGEAGNDPLKRANLINDIADSVAGIPDA 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--- 475 R Y+ AI + + + R + Q+ + + + + + Sbjct: 404 VKRSVYTDAISAKFRIDTDILTDRVRRTREKIQGEERTQAQREAIRARREEDVPRTQEAT 463 Query: 476 -------------LSKKPSLREAALLLTLI-----------------NHPAILQEQYQ-- 503 S + E LL ++ P + E Sbjct: 464 YTPPVNELRALETQSPILAPSERELLRFILMDGSTPLVFESDSEFYSESPQTVAEFIDTA 523 Query: 504 -ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL---CERGFGELLKQLDRQVRD 559 I + N+ Q+ + F+ + K EI + L + ++ QL + Sbjct: 524 LAGDGIVFANDAYQRTYEAYFALYDAGKEQD--EIVRDLLNGPDDAVRFVVSQLSGDKYE 581 Query: 560 AGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + + D + +A+ Y R L + + +++A + E Sbjct: 582 LTVKNFQAALTTRDSWLTNFVPKAILAYHIKR-LQADQTSLTRELATAGPDRQRELFT-T 639 Query: 618 ISILHEVHIQIH 629 + ++E+ +I+ Sbjct: 640 LERINELKKRIN 651 >gi|229818027|ref|ZP_04448309.1| hypothetical protein BIFANG_03315 [Bifidobacterium angulatum DSM 20098] gi|229784631|gb|EEP20745.1| hypothetical protein BIFANG_03315 [Bifidobacterium angulatum DSM 20098] Length = 687 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 142/695 (20%), Positives = 263/695 (37%), Gaps = 82/695 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G + CPFHDEKT SF+ + G + Sbjct: 5 IKKEDIEKVRAAADLYDIVSASVSLKPSG----TGTFVGLCPFHDEKTGSFNVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119 +CF C + GD F+ F E+V+ LA + L + E + L+ Sbjct: 61 HCFGCGLGGDVFKFVEEQENIDFREAVELLADKYHIELHYEQNGNARAEHSGSKRARLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF + L R E F GYAP +L HL +GF+ Sbjct: 121 ANEAAQRFFASQIMTKEALAARKLLGGRTFTQADCERFGCGYAPQGWDNLVRHLASQGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++++AGL G YD FR R+ +PIR S G+ + FG R L + + KY+N+P Sbjct: 181 QQEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYDDDQIAAKYINTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+HK + LY A + K ++VEGY DV+++ AGV +++ Sbjct: 239 DTQLYHKNQVLYGIDLAKQAIVKK----------RQAVIVEGYTDVMAMHLAGVDTAIAT 288 Query: 298 LGTALTEYQLRLLW----------------------KLSPRIVLCFDGDDPGLRAAYKAI 335 GTA E +++ +S RIV FDGD G +AA A Sbjct: 289 CGTAFGEEHAKIVRRLVKDDSLGAIQLVGPLKVDGQPVSSRIVFTFDGDAAGQKAALHAF 348 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L L ++ + DP G A L+ + PL D + Sbjct: 349 GLDPAFL---SQTFVAVAEHNLDPCDLRIEQGDEAVRALVARAKPLYDFVIGAAINRFDT 405 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ----QLFQKYITEHSGYGRYWK 451 + R + I I+D+ Y++ R+ + ++ + R Sbjct: 406 SYSTGRLGAVKAVAPLIAQIRDRSQVDLYTRQAARRIGGVDLDMMRREVERCRRQLRVRD 465 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPS----------------LREAALLLTLINHP 495 ++A ++ + +++ ++ + + E + L+ P Sbjct: 466 EDAYAPKRRLVQPQHADGAMMPERVRQIERENAHKQTFYHVDDAVFIAEEQFMAVLVQIP 525 Query: 496 AILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++ + + L ++ + + L+ + + + P+ + + G +L+ + Sbjct: 526 NAIRVDWFDSLTPASFETSVFRALFQAVVAAGGLPETTTPQGLWMHNLTKAGGPMLEPVI 585 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQ--------ALALYKRF--RLLSRQK-----EEIE 599 ++ L A AN D + Q A R+ LL+R I Sbjct: 586 NELAVMPLPLADRSANGDDAQGQRVQSDANSPASATKAEVRYASELLARLLDMGFVRSIA 645 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A+++ + E+ L+ + + +++Q Sbjct: 646 SARARMSRLPDGEEKIALLGTITNMEASRKSLQNQ 680 >gi|332638575|ref|ZP_08417438.1| DNA primase [Weissella cibaria KACC 11862] Length = 637 Score = 338 bits (867), Expect = 2e-90, Method: Composition-based stats. Identities = 143/659 (21%), Positives = 245/659 (37%), Gaps = 61/659 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P ++++ + I ++I YV ++ N + CPFHDE+TPSF N+ K Sbjct: 6 RIPEHLVEEIRERVNIVDVISPYVQLKKQGRNL-----FGLCPFHDERTPSFSVNEDKQI 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLI 118 Y+CFSC G+ SF+ + +F ++V ++A AGV L E E L Sbjct: 61 YHCFSCGRGGNVFSFIMDIDNATFPQAVAKVAPFAGVDLDASYTADEPTETVDPQTKALR 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L AT +HH L N + L + ++G Sbjct: 121 SLYADATKLYHHLLVNTDAGDTALTYLHERGLDDGTIDAFMLGYAPENDVLYNYFNEQGV 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 + + + L I+ + + +DRF NR++F IR + G IAF GR LS +S KY+NSP Sbjct: 181 DYQLLRASELFIE-WDDGSLHDRFTNRVLFTIRDAAGHPIAFSGRRLSNDDSQAKYMNSP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ LF+K + L+N A ++K ++L EG+MDV++ QAGVQN V+S Sbjct: 240 ESPLFNKSQELFNLDLAKGAIRKQ----------KQVVLFEGFMDVIAAFQAGVQNGVAS 289 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LT Q+++L +++ +I + +D DD G RA +A+DLV + V + + Sbjct: 290 MGTSLTTEQVQVLSRMADKISISYDADDAGQRATKRALDLVAQNGK--MAATVVHIPDNQ 347 Query: 358 DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD F+R +AF L + + + R E + I + Sbjct: 348 DPDEFLRANDVSAFLNVLSHNTEDPIAFNIRYLRMGRDLTNQTEMFAYVSDVLGTIATVT 407 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + +R Y + I + + + + + + + Sbjct: 408 EPIMRETYLRQIGEEFNIGLDALQDQLRPLLLQQQARRSNPRRSNNKRPRQSERVADADF 467 Query: 477 SKKP-----------------------SLREAALLLTLINHPAILQEQYQELADIRYDNN 513 P E LL ++ + + D + + Sbjct: 468 GAAPYDEWQDSAPAPVPAPVAPTISRVEQAERMLLAWMLQDNDVWLQVTNT-PDFTFADV 526 Query: 514 ELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + L S S+ Q + + +L LD E Sbjct: 527 PYETIMMLASGYRSEHGNQPITDMACFMDYVQKADLTRILATLDTYA---------PELF 577 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + + LS + +++QI + A L + Sbjct: 578 TD--RSQVDEYIQFISHDAPLSDRINRLQRQIKEANQMHNDALVAQLSVEYLAALREQQ 634 >gi|118467186|ref|YP_881262.1| DNA primase [Mycobacterium avium 104] gi|118168473|gb|ABK69370.1| DNA primase [Mycobacterium avium 104] Length = 650 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 136/647 (21%), Positives = 242/647 (37%), Gaps = 37/647 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + I ++G YV R CPFHDEK+PSFH + G + Sbjct: 21 IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD +FL + SF+E+V+ LA G + P + ++ LI Sbjct: 77 HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ +L++ YL ER D+ A F G+AP +L +HL++KGF Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARHFGCGFAPSGWDTLTKHLQRKGFEF 196 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+PE Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 GTA + L +L +L D A+ + + Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP G A L+ PL + + ++ + R + Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469 IKD LR Y++ + + + + A G R + Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGGRVSRRAEQSAAPA 484 Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + L + + +PA+ + L + + + + + + Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + +R L L ++ + + Y + + Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645 >gi|307824737|ref|ZP_07654960.1| DNA primase [Methylobacter tundripaludum SV96] gi|307734095|gb|EFO04949.1| DNA primase [Methylobacter tundripaludum SV96] Length = 592 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 165/613 (26%), Positives = 273/613 (44%), Gaps = 49/613 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR+FI +LL+ + I +LI +V + N + A CPFH EKTPSF N K F Sbjct: 4 RIPREFIDELLVRVDIVDLIDSHVPLKKTGNN-----FVARCPFHAEKTPSFSVNRKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIR 119 ++CF C G+ +SFL F+E+++ LA GV +P + + K+K L Sbjct: 59 FHCFGCGASGNAISFLMDFSHLDFVEAIEDLAGFVGVDVPRESTEYQPKQKKDDLNSLYA 118 Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A F+ L+ + K+ YL RG+ F LGYAPD +L QK Sbjct: 119 LMEQAAAFYAEQLRTSDEGKKAVEYLKNRGVSGDCAGDFMLGYAPDEWKALASRFDQK-- 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++AGLL+ S YDRFR R++FPIR R ++I FGGR L KYLNSPE Sbjct: 177 ---LLLDAGLLVSK-ESGQPYDRFRGRIMFPIRDKRARIIGFGGRVL-DDSLPKYLNSPE 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHKGK +Y + L K R I++VEGYMDV++L Q G+ V++L Sbjct: 232 TSLFHKGKEVYGLYELLEKNPKPQR----------ILIVEGYMDVIALAQFGIHYAVAAL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA ++ L LL++ S +V CFDGD G AA++A++ L G ++ +LL + D Sbjct: 282 GTAASQAHLDLLFRFSSELVFCFDGDKAGREAAWRAMESAFSSLKDGRQIRIMLLPQNHD 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R G F + + L + + + + + + RA+L K + + + Sbjct: 342 PDSLVREEGLDGFIGRMQTAETLSEYFFGHFSNELNLSEMEGRAQLVNKAKPYLEKLPES 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +++ + + + + Q + S Sbjct: 402 IFKEMMFARLKELSGWANLDVLENATTLVAKQGSKQDRKIARNRPQDGGRLSSA------ 455 Query: 479 KPSLREAALLLTLINHPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ +P + + Q + + + + L+ + ++ Sbjct: 456 ------RVAIALLVQNPRLAELIEQREIDWSGLEFSG---AALFKNILQMIADKNPANAA 506 Query: 536 EIHQRLCERGFG---ELLKQLDRQVRDAGLWSATTEANIV---DVRQGYQQALALYKRFR 589 + + + + L LD QV D + + ++ R+ L + Sbjct: 507 VLMECYRDTAEEKPIKALALLDSQVADDKIEAVFCDSLDRLLTQARETALTGLLNKGKTE 566 Query: 590 LLSRQKEEIEKQI 602 L Q++E+ +++ Sbjct: 567 GLDAQEKELLRKM 579 >gi|189499600|ref|YP_001959070.1| DNA primase [Chlorobium phaeobacteroides BS1] gi|189495041|gb|ACE03589.1| DNA primase [Chlorobium phaeobacteroides BS1] Length = 630 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 159/650 (24%), Positives = 272/650 (41%), Gaps = 40/650 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ I ++I YV N Y A PF EKTPSF + K Y Sbjct: 2 IPNNKIDEIRESCDIVDVISDYVKLQPSGRN-----YKALSPFTSEKTPSFVVSPDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ +F+ + SF ESV+ +A GV + +K + + Sbjct: 57 KCFSSGKGGNVFTFIMEMEKLSFPESVELVAKRCGVDISKYLKNQGSIDKTERSEHEPLT 116 Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A ++ L +A ++ Y + +RG+ I F LGYAP++ L +H + E Sbjct: 117 WAARLYNRLLNSAGGQKGLEYLVKKRGLSQKTITSFGLGYAPEAWDYLLKHTGSSAIALE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 + ++ GL+ + + YD FR+R++FPI S GQV+ FGGRTLS + KY+NSPE+ Sbjct: 177 RFVKTGLIYHNEKKNSHYDYFRHRVMFPIFSVGGQVVGFGGRTLSDDKQTPKYINSPESA 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K + LY A + ++K F ILVEGYMDVL+L QAG+ N V+S GT Sbjct: 237 VFNKSRLLYGLHAAKDMIRKQ----------GFAILVEGYMDVLALHQAGMINTVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q ++L + + I+ +DGD G+++ ID+ + G L GEDPD Sbjct: 287 SLTREQAKILRRYTEEILFIYDGDQAGMKSMLSGIDV---LVAEGLTPWVATLPAGEDPD 343 Query: 361 SFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 S + G+ F K I S +D ++ SF+ P++++ + + + D Sbjct: 344 SLVTSKGREGFLKFIDSSRKSFIDFQITFHQKDGSFDQPEKKSRAIREILKTVTMVTDTA 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y Q + ++ S + R + + Sbjct: 404 RKELYLQDLEQKIGISVAVLKRIISEIKTSKHSSKRSTRDDTGKSPAQKK--------EA 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLWSFLFSDFVEQKY---- 531 S+ E + +L+ E + A ++ N + L + E K Sbjct: 456 LSVLEKTFIKSLLESTWYGNEVLEFSASHETLLKLSNPVAAHILQHLIKRYRENKETPGS 515 Query: 532 -FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + +L L + + W A+ + R+ L R + Sbjct: 516 FLDITNEIGSMSSPEARDLASGLLIEQPVSERWQASFDEQQQKARRCLTAFLDS-VRSLI 574 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI-QIHQIESQEAMIE 639 L+ +E + I Q+ + ++ L L ++ +++ + MI+ Sbjct: 575 LNDFRETRKHIIDQLRTVTDLDREKALTEKLQQLRKEEMNTAKEVNDMIK 624 >gi|157149981|ref|YP_001450556.1| DNA primase [Streptococcus gordonii str. Challis substr. CH1] gi|157074775|gb|ABV09458.1| DNA primase [Streptococcus gordonii str. Challis substr. CH1] Length = 593 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 142/635 (22%), Positives = 258/635 (40%), Gaps = 51/635 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I D+ + I +IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 2 IDKEIISDIKNSVNIVEVIGEVVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+E+VQ +A +G+ L + K++ L + Sbjct: 57 HCFGCGKSGDVFKFIEEYRGVSFMEAVQIIAERSGIQLAVDKNELSQPKRQHPYQALYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L ++ YL +RG+ I+ F++G AP L + + +K Sbjct: 117 HTEAAKFYHAILMTTKMGEKARAYLYKRGLTDEIIKHFQIGLAPSEGNYLYQSMVEKFDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KGESVKYL 234 + S YD F+NR++FP+ + GQV+AF GR KY Sbjct: 177 ATIMNSGLFN--LAESNLVYDAFQNRIMFPLANDNGQVVAFSGRIWEESPPTDSHQAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K S + L+EG+MDV++ +AG++N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKATIKK----------SHEVYLMEGFMDVIAAYRAGIENA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT ++ L K +++L +DGD G A KA+D + V V + Sbjct: 285 VASMGTALTHEHVQHLSKYCKKVILSYDGDKAGQAATVKALDEL-----KDLSVEIVSIP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + L+ ++ R + + + E + I Sbjct: 340 DQMDPDEFVQKNSPEELQYLLTKTRISDVEFLIRYLKPENTENLQAQIEFVEKMAPIIAQ 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + + R + ++ Q Q++L Sbjct: 400 ATSITAQNSYIYMLAELLPDFDYQQVEQAVNNSRLSNRKSQQEQVY--QQPRFQTNLPLS 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E LL ++ +P +L + + D ++ ELQ L+ L Sbjct: 458 KQVSRLVKAENHLLNRMVEYPIVLNDY-RLREDFQFATPELQILYQILCE---------- 506 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + E + + +E ++ + + + LL ++ Sbjct: 507 ---NGEVTSHDLSEQSDGVQQAWYRILEEDLPSEIADNELAE-----VESIRDKELLRKE 558 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K++ + + G+ + + L ++ Sbjct: 559 NQIIGKRVREASHNGDVDMAIEELERLIAQKRRME 593 >gi|56750270|ref|YP_170971.1| DNA primase [Synechococcus elongatus PCC 6301] gi|56685229|dbj|BAD78451.1| DNA primase [Synechococcus elongatus PCC 6301] Length = 694 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 179/666 (26%), Positives = 290/666 (43%), Gaps = 54/666 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I +++ + V +R D+ CPFHD+K+PSF + +K F Sbjct: 5 RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 YYCFSC G+ + FL L SF E V LA VP+ +++++ + L Sbjct: 60 YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VAT F+ SL+ YL R + I+ F+LGYAP SL H + Q Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K F + + EAGL++ N YDRFR+RL+ PI +G+V+ FGGRTL GE KYLN Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVGFGGRTL-TGEEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK L+ A + K ++VEGY DV++L AG+ + V Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGTAL+ Q++LL + S +IVL FD D G +AA +AI V G ++ + Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+D D +++ + + +L+ S +D + +R+ + D+ + + + Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + LR +Y + +RL Q + + + R + R Q S Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFS----- 524 K EA +L ++ P + + L D + + LW + Sbjct: 461 KPGDDSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEIEEAH 520 Query: 525 ------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQG 577 VE+ +++ + L QL L + + A++ Sbjct: 521 LGFAAMYQVERGEGNGDDLAAIDLVPILRDRLDQLTGVSLGGFLELSENDHADLTHPLPL 580 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIE-- 632 + A+AL +R R R + ++ Q E + I + QI + Sbjct: 581 LRGAVALVERLRCEKRCRHLLDSWARQSIHTFEHCIEQLLQAGIGEDVDAEAQITALHEQ 640 Query: 633 -SQEAM 637 +QEA+ Sbjct: 641 LNQEAL 646 >gi|299144150|ref|ZP_07037230.1| DNA primase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518635|gb|EFI42374.1| DNA primase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 601 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 169/628 (26%), Positives = 290/628 (46%), Gaps = 35/628 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + D+ I I NLI QYV + +N Y CPFH EKTPSF + SKG + Sbjct: 5 IDDELLNDIRDKIDIVNLISQYVHLKKSGSN-----YMGLCPFHGEKTPSFSVSPSKGIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRLI 121 +CF C V GD +SF+ F E+V+ LA G+ L + + Sbjct: 60 HCFGCGVGGDQISFIMKRENLGFREAVKFLADKYGIELKNTSESINTQLINKKNRAYEAN 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF L +R K + YL R ID+ I + LGYAPDS L +L +KGF+ + Sbjct: 120 REAAKFF--MLSLSRSKSAYMYLKNRNIDNDTIRDYGLGYAPDSWNELFNYLSKKGFNGD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++ E L+ + DRFRNR++FPI ++ +VI FGGR L KYLN+ +TI+ Sbjct: 178 ELEEFNLVSKSKSG-KFIDRFRNRIMFPIIDTKKRVIGFGGRVL-DDSLPKYLNTRDTII 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+KGK+LYN ++ IILVEGYMDV+SL ++G+ V+SLGT+ Sbjct: 236 FNKGKHLYNLN-----------IISEKSDREKIILVEGYMDVISLYKSGINYSVASLGTS 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE Q L+ + + +C+DGD G++A +AID+ +I + + L DPD Sbjct: 285 LTEEQAELIKRYGKEVYICYDGDSAGIKATNRAIDI---LIIQNIKPKILTLPEKLDPDE 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ YGK +FE + S P ++ + EN + +PD + + I+ IK+ Sbjct: 342 YVTKYGKLSFEIELKNSQPYLEYKISKIRENYNIESPDGLSGFTSEVSKLISRIKNPIEM 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y I + I R K ++ + ++ K Sbjct: 402 DIYVDKISKQYGVSKNSIINYILILNRNKKNKEFNKKTYEYKNKEVKD---KKISINTRY 458 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + E L+ + + +++ + +E + ++ L + + +++ + L Sbjct: 459 IAEDQLIKYALYSNDNFELIDKKINSCEFTKSECRIIFEELAEYYRQG--IDFKDVLKNL 516 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 ++ + + ++ + +++ I ++ ++ Y+R +L + + +EK Sbjct: 517 VDKKL--ISQDYADKINIIEINQYSSDKIISELIGTLKKDSLEYRRKDIL-QDIKNLEK- 572 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629 + +K +E +LI L+E++ I+ Sbjct: 573 --EEPSKKNSEILKLLIDELNEINKTIN 598 >gi|126659311|ref|ZP_01730447.1| DNA primase [Cyanothece sp. CCY0110] gi|126619393|gb|EAZ90126.1| DNA primase [Cyanothece sp. CCY0110] Length = 644 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 156/649 (24%), Positives = 291/649 (44%), Gaps = 34/649 (5%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 MN+P D ++++ I I ++ YV +R N Y CPFH EKTPSF N Sbjct: 1 MNFPRLHPDTLEEVKEKIDIYEVVSDYVVLKKRGQN-----YVGLCPFHQEKTPSFTVNQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 SK YYCF C G+ + FL + SF + V LA VPL P +IEK+ + Sbjct: 56 SKQLYYCFGCGEGGNGIKFLMEIGQQSFSQVVLELANRYQVPLKTLEPEKRQEIEKELSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ + ++F+ H+L+ A + + Y +R I+ F LGYAP +L + Sbjct: 116 RDQLYEIVALTSNFYEHALQEAVGENVLNYLTQKRQFKHQTIQQFNLGYAPGGWETLYRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QK + + +AGL+ YD FR+RL+ PI+ +G+VIAFGGR+L E Sbjct: 176 LVEQKRYPIALVEQAGLIKPRKKGNGYYDTFRDRLMIPIKDIQGRVIAFGGRSL-TDEEP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSP+T LF+KGK L+ A N ++ S +I+VEGY D ++L +AG+ Sbjct: 235 KYLNSPDTPLFNKGKTLFALDIAKNSIR----------SLDQVIVVEGYFDAIALHEAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTA +E QL+ L + + +++ FD D+ G++A +AI ++ + Sbjct: 285 TNTVASLGTAFSESQLKQLLRYTDSKQVIFNFDADNAGIKATERAITEIESLIYSGQVNL 344 Query: 349 NFVLLSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + G+D D FI+ + +++LI ++ ++ K+ +++ D ++ Sbjct: 345 KILNIPDGKDADEFIKSHENGFEKYQELIDKAPLWLNWEIKQLLIDKNLKQADHFEQVAQ 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + +N + D R YY + L Q + + + + + + Sbjct: 405 GMVKLLNKLSDSNQRSYYISYCAELLAQGDARILPLYIKNLQTQLNKPLKQSANKKIDKT 464 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFS 524 + + + E LL I++P QE + +L + + + ++ + +W L Sbjct: 465 FIKPTISTE-NNLLKEAETILLKIYIHYPECRQEIFDKLEENNLCFSLSDHRIIWHNLLE 523 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + Q + + + + ++ + + + + A Sbjct: 524 IEKDTLNKDNDNNEQFISKLEIKIIESSQVINKINELLNFREIEQYEDRNRLNLIIDAAL 583 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + L + E++ ++ + + ++ +I +++ Sbjct: 584 ISLEKANLEKYCRYCEQKYKKINPQEDPVNYQYYLNEYISSRQKILKLQ 632 >gi|81300101|ref|YP_400309.1| DNA primase [Synechococcus elongatus PCC 7942] gi|93141299|sp|P74893|PRIM_SYNE7 RecName: Full=DNA primase gi|81168982|gb|ABB57322.1| DNA primase [Synechococcus elongatus PCC 7942] Length = 694 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 179/666 (26%), Positives = 290/666 (43%), Gaps = 54/666 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I +++ + V +R D+ CPFHD+K+PSF + +K F Sbjct: 5 RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 YYCFSC G+ + FL L SF E V LA VP+ +++++ + L Sbjct: 60 YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VAT F+ SL+ YL R + I+ F+LGYAP SL H + Q Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K F + + EAGL++ N YDRFR+RL+ PI +G+V+ FGGRTL GE KYLN Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVGFGGRTL-TGEEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK L+ A + K ++VEGY DV++L AG+ + V Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGTAL+ Q++LL + S +IVL FD D G +AA +AI V G ++ + Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+D D +++ + + +L+ S +D + +R+ + D+ + + + Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + LR +Y + +RL Q + + + R + R Q S Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFS----- 524 K EA +L ++ P + + L D + + LW + Sbjct: 461 KPGDVSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEIEEAH 520 Query: 525 ------DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQG 577 VE+ +++ + L QL L + + A++ Sbjct: 521 LGFAAMYQVERGEGNGDDLAAIDLVPILRDRLDQLTGVSLGGFLELSENDHADLTHPLPL 580 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIE-- 632 + A+AL +R R R + ++ Q E + I + QI + Sbjct: 581 LRGAVALVERLRCEKRCRHLLDSWARQSIHTFEHCIEQLLQAGIGEDVDAEAQITALHEQ 640 Query: 633 -SQEAM 637 +QEA+ Sbjct: 641 LNQEAL 646 >gi|149277167|ref|ZP_01883309.1| DNA primase [Pedobacter sp. BAL39] gi|149232044|gb|EDM37421.1| DNA primase [Pedobacter sp. BAL39] Length = 668 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 155/682 (22%), Positives = 281/682 (41%), Gaps = 69/682 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ + I ++G++V +R + CPFH+EKTPSF+ + +KG Y Sbjct: 2 INHETINKIMETVRIDEVVGEFVSLKKRGS-----SLIGNCPFHNEKTPSFNVSVAKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 CF C GD + F+ S+ E+++ LA + + P+ + + + L + Sbjct: 57 KCFGCGKGGDSVHFIMDHEKYSYPEALKFLARKYNIEVEETVQSPQNLEAQNARESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++F + L R Y ERG + F+LGY+PD +L + G Sbjct: 117 SEYAANYFANELWTGDQGRAIGLSYFKERGFREDIVNKFQLGYSPDIWDALILSAKGAGH 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 EE + + GL I D YDRFR R++FPI + G+VI FGGRTL ++ KY+NSP Sbjct: 177 KEEYLEKTGLAIRNDKG-KLYDRFRGRVMFPIHNFTGRVIGFGGRTLKTDKNVPKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY F A ++ + LVEGY DVL++ QAG++NVV+S Sbjct: 236 ESDIYHKSNVLYGLFHAKKAIR----------DTDNCYLVEGYADVLAVHQAGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + S + + +DGD G++A+ + +D+ L G V VL G Sbjct: 286 SGTSLTTEQIRLIGRFSQNVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS++ G F+ I ++ + + P +RA + + I I D Sbjct: 343 DPDSYMHHVGAGEFKAYIEQNRKDFILYKASILLKEAGTDPIKRAGIIRDIVESIAKIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEH------------------------SGYGRYWKKN 453 + + LQ + I+E + ++N Sbjct: 403 DIKASVFIRECSGLLQVEERILISELNKIRMAKFKKAGNAGPSGQQSGGHQQPSSFQQQN 462 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPS------LREAALLLTLIN--HPAILQEQYQ-- 503 + GP L + + +++ P ++E ++ L+ H + ++ Sbjct: 463 SYQPYPDGPPDNLFEHADASVPVTEIPDQVETDLIQEQEIVRLLLAFGHQQVTWDKIDNM 522 Query: 504 --------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 LAD+ +++ + + ++ E + + + + Sbjct: 523 YIGSFIMQNLADVSFEDPVCKSIIDTYRNEIEEGHLPVASQFINNQDRKISELAINLSTS 582 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + W + + D + + + + ++R ++ K+I E Sbjct: 583 PYSLSENWYNKHKIYVRDESVNLKGTILGGLFHLKKGKVARMLTDLSKEIKSEEDPTNLE 642 Query: 613 KTAILISILHEVHIQIHQIESQ 634 + V +I + Sbjct: 643 ILMQRFIFIKGVEREISKYLGT 664 >gi|254455489|ref|ZP_05068918.1| DNA primase [Candidatus Pelagibacter sp. HTCC7211] gi|207082491|gb|EDZ59917.1| DNA primase [Candidatus Pelagibacter sp. HTCC7211] Length = 591 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 163/631 (25%), Positives = 288/631 (45%), Gaps = 44/631 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP++++ ++ + +S ++ + V +R +Y PF +EKTPSF ND K Sbjct: 1 MKYPKEYLDEIKTRLKVSTVVSKSVALKKRGK-----EYVGLSPFKNEKTPSFTVNDEKE 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ G+ F+ + F E+V+ LA +AG+ + + E++EK + + + Sbjct: 56 FYHCFATSEHGNIFDFVMKIQNLKFGEAVKHLAQLAGMQPYMFSKQDEEREKKWKEYLSI 115 Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E +F+H LKN YL R + ++ FK+GY + + FS Sbjct: 116 YEQYVNFYHNELLKNETYSNARDYLKNRFLGKDEVKKFKIGYI--EKNPTFFEKLKNEFS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 E+ ++E+GL + T +RFR RLIFPI + GQ +A GGR + KY+NSPE Sbjct: 174 EQTLVESGLFYLDEKKKTYVERFRGRLIFPINNISGQPVALGGRIIENLEYLAKYINSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T F KG NLYN A + K I LVEGYMDV+ L + G++NVV++L Sbjct: 234 TNFFKKGSNLYNLDLARKFSNKL----------DHIYLVEGYMDVVGLSKNGIENVVANL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ L + I++CFDGD+ G +AA +A + + L P +++F+ L ED Sbjct: 284 GTSLTDKQILTLNQFFDDIIICFDGDESGYKAAVRAAENSIKELKPEKQISFLFLPDKED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS++ GK F + +S + + ++ N P A E L+ N IKD Sbjct: 344 PDSYVNKNGKNYFIEFTNQSKLSIHQFIFSHYKKQTDNNPSSMAIFEKKLRGIANTIKDD 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ Y + +++ +L + Y +K S + K Sbjct: 404 FIKKYVLEYFLEKIAELTPHSNQNKNKYY----------VKKTKSLDTTKKHFNDSKSIT 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+E +LL L+N+ + LQ + DI++ +++ + + ++++ Sbjct: 454 SVELKEFSLLYLLLNNLSFLQANIHLIEDIKFFTEINRQILDTIIQKLKSGEQITIDDLN 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +LL ++++ + N V + + ++ Sbjct: 514 LD------KQLLDKINKFAPIKHILKNKPN-NENQVIELLDDISKDLFNY--------DL 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 E +I ++ +K + + + L E+ + Sbjct: 559 EFRIQELESKFSKDMSETTFNELKELKNERK 589 >gi|229916321|ref|YP_002884967.1| DNA primase [Exiguobacterium sp. AT1b] gi|229467750|gb|ACQ69522.1| DNA primase [Exiguobacterium sp. AT1b] Length = 603 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 160/632 (25%), Positives = 264/632 (41%), Gaps = 37/632 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I ++ I LIG+ V+ ++ CPFH E +PSF + KG Sbjct: 3 RIPDEVIAEVKQATDIVELIGERVELKKQG-----HRLVGLCPFHSENSPSFSVSPEKGM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIR 119 Y+CF C G+ +F+ G SF E+V+RLA A + + D ++ +++ + + Sbjct: 58 YHCFGCGAGGNVFTFVMETEGLSFPETVERLATRANISVDGIQGDEELTREQVWRKQMRD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + D +H L K + YL R + I +K+G+APD R E L ++GF Sbjct: 118 AHRLVADLYHEVLMKTEAGEVGLTYLRNRDLAEETIAQYKIGFAPDQRRFTVELLERRGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++EAGL I S +DRF R++FPI G ++ F GR + KY+N+ E Sbjct: 178 DLEVMVEAGL-ISKSKSGEYFDRFEGRVVFPIADRDGTIVGFSGRAI-DDRQPKYVNTAE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF+K + L+ F A ++K R + LVEG +DVL + QAG Q VV+SL Sbjct: 236 TPLFNKSELLFGFSQARATMRKKKR----------VFLVEGNVDVLQVAQAGTQEVVASL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + R L ++ +++C+DGD G A K I L V + L D Sbjct: 286 GTAFSPQHARALSRIVEEVIICYDGDHAGQEATQKVIRL---LEASPLDVQVLPLPEKTD 342 Query: 359 PDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +IR +G T +++ I ++D + + ++ N ER + I D Sbjct: 343 PDDYIRQHGATHWQQFIESEQLSVLDFMNRMYRRGKNLNREGERIRFIESMLEEIGKTND 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + + D + + + R + P ++ + Sbjct: 403 SIRRDLYVKKLSDEFEIPLETLRSRIPRPTSSESTPTRAMEPVEPVRKRSSKA-----GE 457 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EE 536 + E LL ++ P ++ L +RY + + L S L+ E ++ Sbjct: 458 PRWMKAEKYLLRAMLTGPEQVRFVRDRLG-LRYQDETHRMLGSALYEIVSETMTQDEFDQ 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I ER + R + A + DV Y + + Y+ R + R K Sbjct: 517 ITLPFMERYCDQRPDYAMRFAEIRLM--AGPDELSEDVLDEYIRVINSYEEQRQIERAKR 574 Query: 597 EIEKQIAQVTAKGEAE-KTAILISILHEVHIQ 627 EI + + K LI+ + + Sbjct: 575 EIA---QDAESIVDQASKLQELIARSRRLRER 603 >gi|254774769|ref|ZP_05216285.1| DNA primase [Mycobacterium avium subsp. avium ATCC 25291] Length = 650 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 136/647 (21%), Positives = 242/647 (37%), Gaps = 37/647 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + I ++G YV R CPFHDEK+PSFH + G + Sbjct: 21 IPDRDIAAIRERVRIDEVVGDYVQLRRAGA----DSLKGLCPFHDEKSPSFHVRPNHGHF 76 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD +FL + SF+E+V+ LA G + P + ++ LI Sbjct: 77 HCFGCGEGGDVYAFLQKIEHVSFVEAVELLADRIGHTITYSGPATSVQRDRGSRSRLIAA 136 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F+ +L++ YL ER D+ A F G+AP +L +HL++KGF Sbjct: 137 NAAAAEFYAAALESDEAAPARQYLTERNFDAEAARRFGCGFAPSGWDTLTKHLQRKGFEF 196 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++ AGL DRF RL++PIRSS G+VI FG R L + + KY+N+PE Sbjct: 197 KELEAAGLSRQ--GRRGPMDRFHRRLLWPIRSSAGEVIGFGARRLFDDDPMEAKYINTPE 254 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+L+ K ++ A + K ++VEGY DV+++ AGV V+S Sbjct: 255 TLLYKKSNVMFGIDLAKRDIAK----------GHQAVVVEGYTDVMAMHLAGVTTAVASC 304 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDG----DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 GTA + L +L +L D A+ + + Sbjct: 305 GTAFGDEHLAMLRRLMMDDSFFRGELIYVFDGDAAGRAAALKAFGGEQNLAGQSFVAVAP 364 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP G A L+ PL + + ++ + R + Sbjct: 365 DGMDPCDLRLRSGDAALRDLVARRTPLFEFAIRSALAELDLDSAEGRVAALRRCVPMVAQ 424 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS----- 469 IKD LR Y++ + + + + A G R + Sbjct: 425 IKDPTLRDEYARQLAGWVGWSDVAQVIDRVRSQSKHSAGAGRGGSGGRVSRRAEQSAAPA 484 Query: 470 --SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + L + + +PA+ + L + + + + + + Sbjct: 485 GPAASRPDPRDPTLWPQREALKSALQYPALAGPVFDSLTVESFTHPGYAAVRAAIEAAGG 544 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + +R L L ++ + + Y + + Sbjct: 545 TSSGVTGGQWIEAVRDRASSPLTAGLISELGVEAIQVDDEKLP------RYIAGVLARLQ 598 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + RQ E++ ++ +++ + ++ L L + + Q Sbjct: 599 EVWMGRQIAEVKSKLQRMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 645 >gi|262276865|ref|ZP_06054658.1| DNA primase [alpha proteobacterium HIMB114] gi|262223968|gb|EEY74427.1| DNA primase [alpha proteobacterium HIMB114] Length = 581 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 168/617 (27%), Positives = 302/617 (48%), Gaps = 39/617 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP+ +I ++ + +S+++ V+ +R ++ PF +EKTPSF ND KG Sbjct: 1 MKYPKTYIDEIRNRLKVSDVVRLKVNLKKRGK-----EFIGLSPFKNEKTPSFTVNDEKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS G+ F+ L +F E+V+ LA AG+ + EK EK + +L Sbjct: 56 FYHCFSTAEHGNIFDFIMKLENLNFGEAVKMLAQRAGMQPYRFTKEDEKIEKENLRIQKL 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E+ + L + YL +RG+ I FKLG+ +S+ ++ L + GF+ Sbjct: 116 FEIYFNQCKEDLFSQYKDTHLKYLIDRGLKIETINYFKLGFCENSK-KIQNKLFENGFTS 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++I++G+ D + +RF+NR+ FPI++ I GGRT+ KY+NSPET Sbjct: 175 DELIKSGMYYKKDGTDELVNRFKNRITFPIQNYYNNFIGCGGRTVLANALAKYINSPETN 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F KG NL+N A +S+ +ILVEGYMDV+SL G++NV ++LGT Sbjct: 235 FFKKGFNLFNLNNAKKE----------SLNSNNLILVEGYMDVVSLFNKGIKNVSATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T Q+ L WK +I++CFDGD G+ A+Y+A + +L L PG + F + +DPD Sbjct: 285 AMTTSQISLAWKNFDKIIICFDGDQSGIDASYRAAERILKILKPGKDIYFAKIPNSQDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F+ +GK F LI +S LVD+++ + + P + A LE L N + I+DQ Sbjct: 345 DFVNQFGKEGFNSLISQSKDLVDVIFNHHALGVNKSKPSDIALLEKKLFNIADEIEDQIS 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y A ++++ + + + + + K S RL + K Sbjct: 405 KKYIKSAFKNKIFE---------NIIKKKNYNSQSQEEIKKASLRL---------MLSKE 446 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + E + + ++N+P + + ++++ + ++ E S L + V + E++ ++ Sbjct: 447 EIVELSFINLILNYPEFSESKIEDISLLEFNFKESNIFISELINSLVNENIKTKEDLKKK 506 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L F +K+++ + + + + ++ Y L + K+ ++Q +E Sbjct: 507 LT-INFASFIKKIEMYSNNKSIIVNLNDESYLNFFNDYVDELNVAKK----NKQISSLES 561 Query: 601 QIAQVTAKGEAEKTAIL 617 ++ + + L Sbjct: 562 ELLKNPDEASYNHYLSL 578 >gi|261338091|ref|ZP_05965975.1| DNA primase [Bifidobacterium gallicum DSM 20093] gi|270276710|gb|EFA22564.1| DNA primase [Bifidobacterium gallicum DSM 20093] Length = 693 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 138/703 (19%), Positives = 251/703 (35%), Gaps = 93/703 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +++ V G Y CPFHDEKTPSF+ G + Sbjct: 5 ISKADIEQVRARADLYDIVSSSVTLKPSG----MGSYVGLCPFHDEKTPSFNVRPVMGMW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD ++ F E+V+ LA G+ L E + + L++ Sbjct: 61 HCFGCGRGGDVFGYVQEHENIDFREAVELLADKYGIELHYEAGSKHPETQGSTRARLLQA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF L L R E F GYAP +L HL KGF++ Sbjct: 121 NEEAQRFFTSQLVTEEALPARKMLGGRNFSQADCERFGCGYAPRGWDNLVRHLAGKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSPE 238 +++++AGL G YD FR R+ +PIR S G+ + FG R L ++++ Y+N+P+ Sbjct: 181 QEMLDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYDDDTIQAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV+++ AGV V++ Sbjct: 239 TQLYRKTQVLYGIDLAKPSIVKK----------RQVVVVEGYTDVMAMHLAGVDTAVATC 288 Query: 299 GTALTEYQLRLLWKLSP----------------------RIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 289 GTAFGAEHAKIVRRLIRDDSMGAVNLVGPMRVDGEQLSSRIVFTFDGDAAGQKAAIHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP +G A L+ + PL D + + Sbjct: 349 LDARFL---SQTFVAVAQDNLDPCDLRIEHGDEALRSLVAHAEPLYDFVINTAISRFDTS 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 + + I I+D+ + Y++ R+ + R Sbjct: 406 YTPGQVGAMHAVAPLIAQIRDKSMLDMYTRKAAGRIGVPVDQMRDLVKTERRRQHVRDVD 465 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPS---------------------------LREAALLL 489 + G + E + Sbjct: 466 VYAPERKPFPDGGQMAAGMAQGPYQDMAAARRQQMHETAVNQRYYLVDDAVFMTEQQFMA 525 Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 TL+ P + +Q+ EL + + + ++ + +P+ + + G Sbjct: 526 TLVQIPRAIDPQQFGELTINSFMTSVFRTMFQAVAVAGGLPDPSMPQGLWLHELSKAGGP 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFRLL 591 +L + ++ L +EA++ + + + + L Sbjct: 586 VLAGVINELAVQDLPLPASEADMAAADPNADRSAIQLRPATEAERAFARQLTARLLDLGY 645 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++ Q++ + + ++ + ++ + Q++ Q Sbjct: 646 MRQIGGLKLQMSHMVEGPDK---IAMLGAIADLERKRAQLKEQ 685 >gi|119512319|ref|ZP_01631405.1| DNA primase [Nodularia spumigena CCY9414] gi|119463032|gb|EAW43983.1| DNA primase [Nodularia spumigena CCY9414] Length = 633 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 161/648 (24%), Positives = 288/648 (44%), Gaps = 38/648 (5%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I+++ I +++ +V +R D+ CPFHDEKTPSF + Sbjct: 1 MQIPRLHPDTIEEIKQRADIVDVVSDHVVLRKRGK-----DFVGLCPFHDEKTPSFTVSQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K YYCF C G+ + FL L SF E V LA VP+ P +++++ + Sbjct: 56 TKQMYYCFGCQAGGNAIKFLMDLGKHSFAEVVLDLARRYQVPVQTLAPEQRQELQRQISL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ F+ H+L+ ++ ++ + Y ER + I+ F LGYAP +L + Sbjct: 116 REQLYEVLASTGQFYQHALRQSQGQKAYQYLQSERQLKEETIQQFGLGYAPAGWETLHRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + + +AGL+ YD FR+RL+ PIR +G+VIAFGGRTL E Sbjct: 176 LVEDKRYPVQLVEKAGLIKPRKEGGGYYDVFRDRLMIPIRDIQGRVIAFGGRTL-SEEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF KGK L+ A + + + ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFSKGKTLFALDIAKDGI----------SQLDQAVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTAL+ Q+RL+ + + ++VL FD D G AA +AI ++ ++ Sbjct: 285 NNAVASLGTALSIEQVRLILRYTESKQLVLNFDADKAGNIAAERAIGEIATLAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + G+D D ++ + +E+L+ + ++ ++ +NR + ++ + Sbjct: 345 KILNIPDGKDADEYLYTHTPFDYEQLLANAPLWLNWQIEQIIQNRDLKQATDFQQVSQQV 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + +I + R YY + L + I K S + Sbjct: 405 VKLLKNIDNSDTRNYYVSYCAEILSLGDARLIPLRVENLLTQIAPTTATRNKPLSSKKKF 464 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDF 526 + L EA LL ++ P Q + L + + + + + LW + Sbjct: 465 TQSPIPGDKSLLELAEALLLRIYLHCPEQRQIIFNTLEERNLEFSLSHHRLLWQKILGST 524 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E+ + L +R L + + + ++ I+ Q Q A+A + Sbjct: 525 GEEV-----DFVSSLQDRYLE--LSEEIASISHLFHLNEKSQKEILRTPQAVQAAVACME 577 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R L+ ++ + + ++ E EK + +++ +++ Q Sbjct: 578 RV-LIEKRYRYFLELWEKTDSQAEPEKWQSYYQSFYHEKMRLQELDRQ 624 >gi|119773961|ref|YP_926701.1| DNA primase [Shewanella amazonensis SB2B] gi|119766461|gb|ABL99031.1| DNA primase [Shewanella amazonensis SB2B] Length = 576 Score = 338 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 177/628 (28%), Positives = 290/628 (46%), Gaps = 64/628 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M PRDFI DL+ I LI + V + N Y ACCPFH EK+PSF + K Sbjct: 1 MAIPRDFINDLIARTDIVELIDRKVPLKKAGKN-----YSACCPFHSEKSPSFTVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C G+ + F+ +F+++++ LA G+ +P ++++ + DL + Sbjct: 56 FYHCFGCGAHGNAIDFVMEYDRLNFVDAIEDLAGQLGLEVPREQGTGPRRDEGLARDLYQ 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+E A + L+ DK+ RG+ +E F +G+APD L R Sbjct: 116 LMEEAARHYQTQLRQHADKQKVDEYLALRGLSKEVVEDFGIGFAPDGWDGLLGRYRTNPD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +++K++ G+LI+ D YDRFR+RL+FPIR RG+VI FGGR L + KYLNSPE Sbjct: 176 AQDKLLTGGMLIENDGG-KRYDRFRDRLMFPIRDRRGRVIGFGGRVL-GDGTPKYLNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +FHKG+ LY + + R +++VEGYMDV++L Q G+ V+SL Sbjct: 234 TPIFHKGQELYGLYELKQKHRDPER----------VMIVEGYMDVVALAQFGIDYAVASL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+ T Q +LL + + ++ C+DGD G AA++A++ L L PG++V F+ L +GED Sbjct: 284 GTSTTAEQFQLLLRSAKEVICCYDGDKAGYEAAWRAMETALPLLKPGDKVTFLFLPQGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AFE I +LPL D L+ ++ ++ L I IKD Sbjct: 344 PDSQVRKEGKEAFEMRIDNALPLADYLFDTLSQKY----GTDKGNLAKQAIALIEKIKDT 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L + + +L + + + G S ++ K L Sbjct: 400 VLANLLLENLAHKLGMNSSEDLRKKLGL---------------TSMSTGAKAMAKKGLKG 444 Query: 479 KPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + + L+ HP + + L+ IR E + ++ + Sbjct: 445 RGTPL-RLAISLLVQHPELGHKLPVQPALSHIRMTGIE----LLIQLLELTREQVLSTAQ 499 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + + L +L + + +V Q +++AL Sbjct: 500 LLESYRDSEHWGPLTKLAQW---------EHQIAEDNVAQEFRKALVWLNNQY------- 543 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624 IE++ +++ K + + L L ++ Sbjct: 544 -IEQRYQELSIKPDLTREEKL--QLQKL 568 >gi|326798100|ref|YP_004315919.1| DNA primase [Sphingobacterium sp. 21] gi|326548864|gb|ADZ77249.1| DNA primase [Sphingobacterium sp. 21] Length = 658 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 168/667 (25%), Positives = 281/667 (42%), Gaps = 61/667 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I +L I ++G +VD +R T CPFH+EKTPSFH + SKG Y Sbjct: 2 IKQETIGKILDAARIEEVVGDFVDLKKRGT-----SLIGVCPFHNEKTPSFHVSVSKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C GD + F+ L S+ E+++ LA + + V P+ + L+ + Sbjct: 57 KCFGCGAGGDSVRFVMELEKYSYPEALRYLAQKYNIEVEEVELSPEQAAASDKRESLLII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A FF SL + D + Y ERG I+ F+LGY+P++ +L E + GF Sbjct: 117 TNWAAKFFRESLWDTEDGQAIGLSYFRERGYRDDIIKKFELGYSPEAWAALYEEAVKGGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S E + E GL+I D+ YDRFR R++FPI + G+V+ FGGRTL + KY+NSP Sbjct: 177 SVEFLDETGLIIRRDDG-KRYDRFRGRVMFPIHNLTGRVLGFGGRTLKTDKKTPKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E++++HK LY + A + LVEGY DV+S+ QAGV+NVV+S Sbjct: 236 ESLIYHKSDVLYGLYFAKKAI----------TDQDNCFLVEGYADVISMHQAGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + + + +DGD G++A+ + +D+ L G V +L G+ Sbjct: 286 SGTSLTTGQIRLISRFTRNVTILYDGDAAGIKASLRGMDM---LLEEGMNVKVLLFPDGD 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF +G F++ I E+ + N P +RA + + + I I D Sbjct: 343 DPDSFAMKHGAMQFKQYIAENSKDFIFYKTDILLKDAGNDPVKRAGVIHDVVDSIALIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ------------------ 459 + + L + I E + K + Sbjct: 403 DIKASVFIRECSRLLDIEERLLIAELNKQKLQAIKKNQKSSDSSAAANAPFGGDEPPPDL 462 Query: 460 ---KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE----------LA 506 ++ LS+ +L+E ++ LIN+ I + Q+ L Sbjct: 463 FMDPRDMAETRSQEELQPALSQSIALQEREIIRLLINYGQIPAKWEQDYPIAFVLFAGLQ 522 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 DI + + QK+ + ++ + L + W+ Sbjct: 523 DIEFADPLCQKIITIYLEFIEREELPDERYFISHADREIADLAISLLSSPYSLSPNWNDE 582 Query: 567 TEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +++ AL + R + + +E+ + + + E L Sbjct: 583 KRKIYVSQETDNLKNAVLGALY-RIKKRKVEQNMQEVREALKIEHNEANLEILIDKYQKL 641 Query: 622 HEVHIQI 628 + ++ Sbjct: 642 KMMEKEL 648 >gi|260583937|ref|ZP_05851685.1| DNA primase [Granulicatella elegans ATCC 700633] gi|260158563|gb|EEW93631.1| DNA primase [Granulicatella elegans ATCC 700633] Length = 609 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 153/637 (24%), Positives = 290/637 (45%), Gaps = 42/637 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + + + + I +++ QYV +R N Y+ CPFHDE+TPSF + K Y Sbjct: 5 IPEETLNQIQSQVNIVDIVSQYVSLKKRGKN-----YFGHCPFHDERTPSFSVTEEKQIY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121 +CFSC G SF+S + G SF+ESV ++A +A +P + ++ Sbjct: 60 HCFSCGRGGTVFSFISEIEGLSFVESVAKVAELAQIPFENKYLSSRPSVQDTYQPIVAAH 119 Query: 122 EVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +F+ H L+ ++ YL RG I+ FK+G A R + ++Q + Sbjct: 120 EKAAEFYQHVLLQTRGGEKALEYLQHRGYTLETIQTFKMGLALKDRTYVTNLIKQIPLTP 179 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV------KYL 234 +++ E+GL I ++ DRF +R++ P+R+ +G+VIAF GR L E + KYL Sbjct: 180 QQMEESGLFIARNDD--FIDRFYHRIMIPLRNEQGKVIAFSGRILPNDEEMVDEQEAKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS ET +F+K + L+N+ A + ++K + ++L EGYMDV++ QAG +N Sbjct: 238 NSSETPIFNKRQFLFNYDLAKSAIRK----------TGQVVLYEGYMDVIASWQAGAKNG 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LT+ Q+++L +++ I++ +D D GL A +AI+L+ ++ + L Sbjct: 288 VASMGTSLTKEQIQILSRVANEIIIAYDSDRAGLDATNRAIELL--QENSALTISILSLD 345 Query: 355 RGEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FI+ G A+ E+L + + + ++ E+ + + + Sbjct: 346 AGKDPDEFIQQRGAEAYLEQLAHHTESVFQFKKRYFSKQYRLEIEREKVQFLEQMTIELA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I R + +++ D + ++ + R +K+ + H S +S ++ Sbjct: 406 KISKPIEREFAIKSLADEYGISAELLSSQVNFVQRKFKQQSSH------STGEWTASPMR 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + LL L++ P +E + + + Q+ + L S + Sbjct: 460 ISQDGPMEVSQKQLLYRLLHSPEAWSYLARENEEFEFPYVDYQQFYILLRSYREQH---- 515 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + F L + D R+ E + + + L + Sbjct: 516 ----LEELLVQEFMNFLDESDAVNRNLLSMIEWLEMPEECTEKEIHDLMYFLSKKEDLKQ 571 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q + +++ + +A + L+ L + Q+ + Sbjct: 572 QYQRCMQEMKEAQLSNDATRANQLMMELVNIQKQLKK 608 >gi|221068480|ref|ZP_03544585.1| DNA primase [Comamonas testosteroni KF-1] gi|220713503|gb|EED68871.1| DNA primase [Comamonas testosteroni KF-1] Length = 664 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 231/475 (48%), Gaps = 26/475 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MAIPQSFIQELLSRVDVVDIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFTVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------KEKIQ 114 F++CF C G+ + FL G F+E+VQ LA G+ +P D + +++ Sbjct: 56 FFHCFGCGKNGNAIGFLMEHAGMGFVEAVQELANQCGLQVPQDDISPAERQRQAQQKQKA 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+E A + + LK + YL +RG+ + F LGYAP + L Sbjct: 116 ETLSDLLEKAGESYRKQLKA--APKAIEYLKKRGVSGEVSKRFGLGYAPAGWHGLASVFA 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + ++ E GL+I G++ + YDRFR+RL+FPIR+ +G+ I FGGR E KYL Sbjct: 174 --EYDNPQLEECGLVIVGEDDSRRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYL 230 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY + A L+ + ++ EGYMDV++L Q G N Sbjct: 231 NSPETPVFHKGRELYGLYEARQALR----------DMGYALVTEGYMDVVALAQLGFANA 280 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T ++ L++ + +V FDGD G RAA KA+D L + F+ L Sbjct: 281 VATLGTACTPEHVQKLFRFTDAVVFSFDGDGAGRRAARKALDAALPLATDTRSIKFLFLP 340 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSFIR +G AF + + ++ PL L + +E + RA + + + + Sbjct: 341 SEHDPDSFIREFGPEAFSRYVGDATPLSRFLIESASEGCDLGQTEGRAHMASNARPLWSL 400 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + D L+ I Q + + +R PS Sbjct: 401 LPDGALKRQLLSEIAALAQLDSRDLTDIWAQEAARTAPISRRAPAAAPSGPQAPE 455 >gi|304312383|ref|YP_003811981.1| DNA primase [gamma proteobacterium HdN1] gi|301798116|emb|CBL46338.1| DNA primase [gamma proteobacterium HdN1] Length = 724 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 155/477 (32%), Positives = 235/477 (49%), Gaps = 24/477 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI DLL + + LI +++ R N + CCPFH EKTPSF + K F Sbjct: 4 RIPDQFIDDLLSRVDLVALIDRHLPLKRSGRNFTR-----CCPFHQEKTPSFSVSPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL SF+E+++ LA G +P + + K ++ L +++ Sbjct: 59 YYCFGCGASGNAVSFLMDYSHLSFVEAIESLAKSIGAEVPRDEQQHPKGPDLR-PLYQIL 117 Query: 122 EVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF LK +R++ YL +R +D+ IE F+LGYAP +L L ++ Sbjct: 118 EQARAFFSAQLKKSRERERALGYLRKRQLDAEIIERFQLGYAPPGWDNLISALGTSSQAK 177 Query: 181 EKIIEAGLLIDGDNSATS------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +++ G+++ T YDRFR+R++FPIR + G+ IAFGGR L E KYL Sbjct: 178 ALLLQTGMVVQSQQEHTPSQQARSYDRFRDRIMFPIRDASGRTIAFGGRVL-GDEKPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY F+ A K R I+VEGYMDV++L Q+G+ Sbjct: 237 NSPETPVFHKGKTLYGFYEARQARGKLER----------FIVVEGYMDVIALAQSGITCA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T + L+++ +V CFDGD G AA++A++ L + G F L Sbjct: 287 VATLGTACTREHVETLFRIVDEVVFCFDGDRAGRAAAWRALENTLPAMREGRTARFHFLP 346 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPD+ +R G F + ++LPL + L+ + T D RA+L I Sbjct: 347 DGEDPDTQVRKDGPELFLAQLQKALPLPEYLFDHLMGELNIQTLDGRAKLAHLALPLIEQ 406 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + L+ + + ++ + + H + P + Sbjct: 407 LPKGVLQELMIDRLAELVRMSRSSLESMVKRAAPEPPSTSGHSQVRAPQKEPANDRA 463 >gi|283455603|ref|YP_003360167.1| dnaG DNA primase [Bifidobacterium dentium Bd1] gi|283102237|gb|ADB09343.1| dnaG DNA primase [Bifidobacterium dentium Bd1] Length = 690 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 2 ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L + + + L+ Sbjct: 58 HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF L LD R + F GYAP +L HL KGF++ Sbjct: 118 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 +++++AGL YD FR R+ +PIR S G+ + FG R L + + + KY+N+P+ Sbjct: 178 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ +++ Sbjct: 236 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 285 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 345 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI ++ PL D + + Sbjct: 346 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 402 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L Y++ R+ E R Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 462 Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +R + + + ++ + E + Sbjct: 463 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 522 Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 TLI P ++ + L + + L+ + + P+ + + G Sbjct: 523 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 582 Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590 +L+ + ++ L +E ++ D + Y L Sbjct: 583 MLESVINELAVMPLPLPPSEDDMNMGRASREQEGAVQLRKPTDAERRYASELLARLLDMG 642 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L R+ ++++AQ+ GE + ++ + + + Sbjct: 643 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 682 >gi|171741009|ref|ZP_02916816.1| hypothetical protein BIFDEN_00075 [Bifidobacterium dentium ATCC 27678] gi|171276623|gb|EDT44284.1| hypothetical protein BIFDEN_00075 [Bifidobacterium dentium ATCC 27678] Length = 693 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 5 ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L + + + L+ Sbjct: 61 HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF L LD R + F GYAP +L HL KGF++ Sbjct: 121 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 +++++AGL YD FR R+ +PIR S G+ + FG R L + + + KY+N+P+ Sbjct: 181 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ +++ Sbjct: 239 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 289 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI ++ PL D + + Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L Y++ R+ E R Sbjct: 406 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 465 Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +R + + + ++ + E + Sbjct: 466 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 525 Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 TLI P ++ + L + + L+ + + P+ + + G Sbjct: 526 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590 +L+ + ++ L +E ++ D + Y L Sbjct: 586 MLESVINELAVMPLPLPPSEDDMNMGRASREQEGAVQLRKPTDAERRYASELLARLLDMG 645 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L R+ ++++AQ+ GE + ++ + + + Sbjct: 646 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 685 >gi|319947290|ref|ZP_08021523.1| DNA primase [Streptococcus australis ATCC 700641] gi|319746532|gb|EFV98792.1| DNA primase [Streptococcus australis ATCC 700641] Length = 641 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 142/633 (22%), Positives = 262/633 (41%), Gaps = 48/633 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY+ Sbjct: 50 DKQLISEIKNSVNIVDVIGEVVQLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 104 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRLIE 122 CF C GD F+ G SF+E+VQ + G+ + P+ ++ + + + Sbjct: 105 CFGCGKSGDVFKFIEDYRGVSFMEAVQIVGDQVGIHVQTHAPQSRGQQADGKQPFYEIHQ 164 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A F+H L + YL +RG+D + F++G AP L + + K + Sbjct: 165 EAAKFYHAILMTTKMGEDARQYLYDRGLDDEVLRHFQIGLAPAEGNYLYQSVSGKFSEKI 224 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYLNS 236 I T YD F+NR++FP+ G+VIAF GR + KY NS Sbjct: 225 MAESGLFHISDMG--TIYDAFQNRIMFPLSDDTGRVIAFSGRLWREPVEGAKPQGKYKNS 282 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 T+LF+K LY+ A +K + + L+EG+MDV++ +AG++N V+ Sbjct: 283 RSTLLFNKSYELYHLDKAKQVAKK----------NHELYLMEGFMDVIAAYRAGIENAVA 332 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GTALT+ + L K + +++L +DGD G A KA++++ H + V + Sbjct: 333 SMGTALTQEHVAHLSKFTKKVILAYDGDKAGRLATAKALEVLDKHEVE-----VVQIPDQ 387 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD ++ A L+ ++ + + + E + I Sbjct: 388 MDPDEYLNKNSPQALADLLEKTRLSRVEFLMDYWKPDNIENLQAQIEFVEKMAPLIAQTP 447 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + D L + + R ++ R + +Q + S V K Sbjct: 448 SVTAQNTYIYKLADLLADFDYLQVEQTVNASRLQMRSQRQEQTQIQTQAPLASPTVLQKQ 507 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E LL + P +L E + D +D LQ L+ L Sbjct: 508 LPRLVRAENHLLHRMNAFPYVLNEY-RLRTDFSFDTPALQILYQLLCQ------------ 554 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + + E +++ R + E ++ + + + + LL ++ + Sbjct: 555 -NGEVTSQDLSEQTEEVQR-----AWYLMLEENLPDEIAENELEEVEETRNRELLRKESQ 608 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +I K++ + + G+A++ + + L ++ Sbjct: 609 QIGKKVREASHSGDADQALLELERLIAQKRRME 641 >gi|213964162|ref|ZP_03392400.1| putative DNA primase [Capnocytophaga sputigena Capno] gi|213953203|gb|EEB64547.1| putative DNA primase [Capnocytophaga sputigena Capno] Length = 656 Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 160/669 (23%), Positives = 283/669 (42%), Gaps = 63/669 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + + +IG +V R +N Y PF +E+TPSF + K + Sbjct: 2 ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+K + + L + Sbjct: 57 KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETEQSNEEKAQADERESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F +L N + Y ERG I+ F+LG++PD + + KG+ Sbjct: 117 SEYAQQYFQDTLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDTALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 E + + GL I N +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ + Q G++NVV+S Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ +L+P I + +DGD GLRA+ + +DL L G V G+ Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPDGD 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + N P ++AE + I+ I D Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + + Q + + + ++ R QK Q + + + Sbjct: 402 LIKREVYVRECASIMDISEQVLFSTLAQILKKDFYEGQKVERKQKAAMQVVQTPEEAQKR 461 Query: 476 LSKKPSLREAALLLTLINHP----------------------------AILQEQYQEL-- 505 + + E L+ L+ + + ++ + EL Sbjct: 462 TVNRLEVLEYDLIKNLLLYGNRECIFTDTILVEEEDGTLKEQQIQQTLKVYEKIFLELQE 521 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEIHQRLCERGFGELLKQLDRQVRDAG 561 +I N + ++++ L E + E+ L E+ G LL + Q+ D Sbjct: 522 DEIELANPDFKQIYELLMGKLSENPAYDVNRIANELPIELSEKVSGMLLDDENNQLHDWS 581 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +A + + + L R L+ + + +Q+AQ + + E +++ Sbjct: 582 KRDIVPKAKDAHL-ETIVGDIILNIRNLLVHHLIQSLTQQMAQANEEEKKELLENVMN-Y 639 Query: 622 HEVHIQIHQ 630 ++ + + Sbjct: 640 IQLQKLLAK 648 >gi|322387733|ref|ZP_08061342.1| DNA primase [Streptococcus infantis ATCC 700779] gi|321141600|gb|EFX37096.1| DNA primase [Streptococcus infantis ATCC 700779] Length = 591 Score = 337 bits (863), Expect = 4e-90, Method: Composition-based stats. Identities = 136/629 (21%), Positives = 259/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG+ + + N + CPFH EKTPSF+ + K FY+ Sbjct: 8 DKRVIEEIKNNTNIVEIIGEVISLQKSGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ +F ++V+ L G+ L K +L + + Sbjct: 63 CFGCGRSGDVFKFIEEYQQVTFADAVRMLGERLGIHLEAPAHKPVPHTSPHQNLYDMHDK 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ I+ F +G AP R L + L +SE+ Sbjct: 123 AARFYHAILMTTKMGEEARNYLYKRGLTDDVIKHFMIGLAPAERSYLYQRLAD-DYSEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL S +D F NR+IFP+ + +G+VIAF GR + +S KY NS T Sbjct: 182 LLDSGLFYLS-ESNQFFDTFHNRIIFPLSNDQGKVIAFSGRIWQETDSQTAKYKNSRATE 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ K + I L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDRVKKGSGK----------APEIYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT + L + + ++++ +DGD G A KA++ + V V + DPD Sbjct: 291 ALTAEHVEHLKRFTKKVIITYDGDKAGQAATAKALEEL-----GDLPVQIVQIPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ + + + + + E + I Sbjct: 346 EYLQKNSPEDLAYLLSNTRISPIEFYIHHYKPSNSENLQAQIEFIEKIAPLIVKEPSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + R ++ + + P+ M S K Sbjct: 406 QNTYIHLLTDHLPSFDYQQVEHIINESRVRQRQEKVKQVVNPTPITMSVS----KQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA +L ++ HP ++ Y+ ++ E Q L+ L + Sbjct: 462 MRAEAHILYRMMEHP-LVLNDYRLRDGFVFETPEFQTLYGLLID-------------NGS 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + ++++ +E + ++++ + + LL++Q +I+K Sbjct: 508 ISSEDLANQTREVENAWYQVLALDLPSEMSPEELKE-----VEESRNRALLNQQNLQIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDAALEELERLIAQKRRME 591 >gi|306823360|ref|ZP_07456735.1| DNA primase [Bifidobacterium dentium ATCC 27679] gi|309802698|ref|ZP_07696802.1| DNA primase [Bifidobacterium dentium JCVIHMP022] gi|304553067|gb|EFM40979.1| DNA primase [Bifidobacterium dentium ATCC 27679] gi|308220762|gb|EFO77070.1| DNA primase [Bifidobacterium dentium JCVIHMP022] Length = 693 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 137/700 (19%), Positives = 253/700 (36%), Gaps = 91/700 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 5 ILKEDVEKVRAAADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L + + + L+ Sbjct: 61 HCFGCGLGGDVFGYVEQQENIDFRDAVELLADRYHIELRYDQANAKPEHAGSKRARLLEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF L LD R + F GYAP +L HL KGF++ Sbjct: 121 NEAAQEFFVSQLMTREALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 +++++AGL YD FR R+ +PIR S G+ + FG R L + + + KY+N+P+ Sbjct: 181 KEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ +++ Sbjct: 239 TQLYRKNQVLYGIDMAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 289 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI ++ PL D + + Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRIKRGNEAVRSLIEQAKPLYDFVIEAAIGRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L Y++ R+ E R Sbjct: 406 YTTGQMGAVKAVAPLIAQIRDRSLLDLYTRKAVRRIGIDLDIMQREVRDARRKLNVRDDD 465 Query: 450 --------------------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +R + + + ++ + E + Sbjct: 466 AYAPKRRYVGGNAVEQRVEQGANPYENRSVRKALEHRDATEQTYYRIDDAVFICEQQFMA 525 Query: 490 TLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 TLI P ++ + L + + L+ + + P+ + + G Sbjct: 526 TLIQVPRAVEPSMFAGLTLSNFITPVFRSLFQAVAAAGGLPSEDTPQGLWMHNLTKAGGP 585 Query: 549 LLKQLDRQVRDAGLWSATTEANIV------------------DVRQGYQQALALYKRFRL 590 +L+ + ++ L +E ++ D + Y L Sbjct: 586 MLESVINELAVMPLPLPPSEDDMNVGRASREQEGAVQLRKPTDAERRYSSELLARLLDMG 645 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L R+ ++++AQ+ GE + ++ + + + Sbjct: 646 LMRKIGAAKRRMAQLPDGGEKIELLGQVTNMEALRKDLQA 685 >gi|294340366|emb|CAZ88747.1| putative DNA primase [Thiomonas sp. 3As] Length = 626 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 178/661 (26%), Positives = 277/661 (41%), Gaps = 78/661 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI+DLL I ++GQYV+ + TN Y CPFH EKTPSF + SK F Sbjct: 4 RIPPGFIQDLLARADIVEVVGQYVELKKTGTN-----YKGLCPFHGEKTPSFTVSASKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQT 115 Y+CF C G + FL G F+++V+ LA G+ +P D +I+++ +Q Sbjct: 59 YHCFGCGAHGTAIGFLMEHAGMGFVDAVKELARRYGMTVPEPDLDPQQLRQIQQQRSLQA 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ ++ A F+ H L+ +R YL RG+ + F LGYAPD L Sbjct: 119 TLVDALQTADGFYQHRLR--HSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFAN 176 Query: 176 KGFSEEKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223 + D ++ YDR R+R+ FPIR+ RG+VI FGGR Sbjct: 177 YNADALVQSGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGR 236 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 + + E KYLNSPET +FHKG+ LY F A + + + + + ++VEGYMDV Sbjct: 237 IIDQSEP-KYLNSPETAVFHKGEELYGLFEARSAISR----------AGYALVVEGYMDV 285 Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 ++L Q GV+ V++LGTA T QL+ L++ + ++V FDGD G RAA +A++ L L Sbjct: 286 VALAQFGVEQAVATLGTACTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLS 345 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 V F+ L DPDS++R G AFE+ I + PL + L+ + + T + RA+ Sbjct: 346 DTRVVKFLFLPAEHDPDSYVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQ 405 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 ++ I L + RL+ + R Sbjct: 406 AIHEAGPLLSQITAPALLGQLVADLARRLEMPATELREVL-----------RLSSPSRKP 454 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELAD 507 +S ++G + L P + A Sbjct: 455 SAPAESFGMRGMKTAPRVRGGREALRAFAAVPKDPLRQLLPLLLSQPELWWSINPAQHAL 514 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + + LQ L L S +Q + + L G + + + Sbjct: 515 LSLEPGPLQGLVLTLESILEDQPELSAAALWEALRAAGHA-----------PEEVLAESP 563 Query: 568 EANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + +D Q LA+ R L R+++E+ + A + + L L E+ Sbjct: 564 DPLELDEAAAKQDLLAILSRLERATLKRRQDELVA--GGLVADADRTEYRSLALRLKEID 621 Query: 626 I 626 Sbjct: 622 Q 622 >gi|76787887|ref|YP_330070.1| DNA primase [Streptococcus agalactiae A909] gi|76562944|gb|ABA45528.1| DNA primase [Streptococcus agalactiae A909] Length = 593 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 48/635 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + Sbjct: 1 MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 F++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ Sbjct: 56 FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A + K + + L+EG+MDV++ +AG++NV Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ F++L+ + + + + + + I Sbjct: 340 NKMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + R ++ + + +Q L + Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQT 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYQLLKESGE------- 509 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + +++R E +I ++ + ++A + R L +Q Sbjct: 510 ------ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 563 ----SQLIRQSSNQGDQEGALAALENLIAQKRNME 593 >gi|30248252|ref|NP_840322.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718] gi|30180137|emb|CAD84139.1| CHC2 zinc finger [Nitrosomonas europaea ATCC 19718] Length = 600 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 181/631 (28%), Positives = 286/631 (45%), Gaps = 63/631 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI++LL I I +++ +++ + N + ACCPFH+EKTPSF N SK FY Sbjct: 2 IEQSFIQELLDRIDIVDVVARHLQLKKAGAN-----FTACCPFHNEKTPSFTVNSSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C G+ +SFL G SF+E+V+ LA AG+ +P DP +KI+ Sbjct: 57 HCFGCGRHGNAISFLMEHSGASFVEAVESLATHAGMQIPDQVSIYPKIPDPGRVPSDKIK 116 Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 L +E A F+ LK + + YL ERGI F +GYAP Sbjct: 117 IDKEVEATSPLAGLYERMEQAAKFYRGQLKQSD--QAIAYLKERGISGRTALCFGIGYAP 174 Query: 164 DSRYSLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 +L + L+ + +YDRFR+R++FPI + +++ FGG Sbjct: 175 PGWQNLSGIFTDYPADDSSHPLVQAGLVVAHDGKKNYDRFRHRIMFPILDRKKKIVGFGG 234 Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 R L GE KYLNSPET LF KG+ LYN A ++KS R +I+VEGYMD Sbjct: 235 RALDGGEP-KYLNSPETSLFVKGRELYNLASASPAIRKSAR----------VIVVEGYMD 283 Query: 283 VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 V+ L Q+GV+NVV++LGTA T ++ L + + +V CFDGD G +AA++A++ L L Sbjct: 284 VVMLVQSGVENVVATLGTATTAMHIQNLLRHTDEVVFCFDGDAAGTKAAWRALETSLPQL 343 Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 G + F+ L EDPDS+IR YG+ AFE L+ ++ PL + + T + RA Sbjct: 344 KDGKDIKFLFLPDKEDPDSYIRKYGRVAFEGLLEKAQPLSVFFCNELSGRVNLGTSEGRA 403 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 L + I + + R+ +L + + + + KKN + Sbjct: 404 RLVQRAGPLLAQINAPV----FGFMLTKRISELTGVGQNQLAAFLKTGKKNRSSTLRPEA 459 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S+ L + L+ L++ P + L + + NE + L L Sbjct: 460 SRPLSVTPY-------------RRLIQILLHAPDYANKLDTNLLAVNDEQNEEKVLLVAL 506 Query: 523 FSDFVE-----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTEAN--IVDV 574 ++ I + LL+++ R W+ E + + Sbjct: 507 VDFLKTSACSMEEELNSVTILLHFDQTPHRVLLEKIVRDAHVKDENWNIDAEFTGGMERL 566 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 R+ +++ R L E + ++ Q+ Sbjct: 567 REMQRRSRMAELHSRPLVSLTPEEKNELRQL 597 >gi|74318405|ref|YP_316145.1| DNA primase [Thiobacillus denitrificans ATCC 25259] gi|74057900|gb|AAZ98340.1| DNA primase [Thiobacillus denitrificans ATCC 25259] Length = 565 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 182/612 (29%), Positives = 274/612 (44%), Gaps = 54/612 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PRDFI LL + I ++I + V + N Y ACCPFH EKTPSF + SK FY Sbjct: 2 IPRDFIDTLLSRVDIVDVIDRRVPLKKAGQN-----YQACCPFHSEKTPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G L FL SF +SV LA AG+P+P + ++ K L +E Sbjct: 57 HCFGCGAHGTALGFLMEYEHMSFPDSVAALAEDAGLPMPESSLE-PERPKPPPALWDALE 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+ LK + YL +RG+ + +GYAPD L++ + Sbjct: 116 QAARFYKQQLK--QAPHAIDYLKQRGLSGAIAARYGIGYAPDGS-----PLKRVFADYDA 168 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 A + DN YDRFR+R++FPIR+ +GQ++ FGGR L +GE KYLNSPET LF Sbjct: 169 EALAASGLVVDNEGRRYDRFRDRIMFPIRNVKGQIVGFGGRVLGQGEP-KYLNSPETPLF 227 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG +Y F ++ +++VEGYMDV++L Q GV+ V++LGTA Sbjct: 228 HKGSEIYGLFE----------ARAAIKRAARVVVVEGYMDVVALAQHGVEFAVATLGTAT 277 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T R L + S R+V FDGD G +AA++A++ L L G V+F+ L GEDPDS+ Sbjct: 278 TPVHARTLLRHSDRLVYAFDGDAAGRKAAWRALENSLEALQDGKEVSFLFLPEGEDPDSY 337 Query: 363 IRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR +G AF +L+ +LPL L + R +T + +A L K + I L Sbjct: 338 IRDHGCDAFLRLLDNETLPLSAFLMRELARGRRLDTQEGQATLLKDAKPLLEKIGAPLLA 397 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + I + L Q + + S G + L + + Sbjct: 398 RLIQRQIAE----LTQLQVGDLSAMGLR---------------PVASRPLPPRQQRRIAP 438 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 R L L+ +P E + +D + L + E + + Sbjct: 439 SRLRGLARILLMNPQRASEV----EPLWFDARDPLHAT-AGELIAWLREVGPLRLHTLAE 493 Query: 540 RLCERGFGELLKQLDRQVRDAG---LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 G + + +L + D W+A E + +R +++ R L+ Sbjct: 494 AAKGSGMEDFVNELMVDLLDKDDTWDWNAEFEGAVQQLRDDWRRRRVQELAARPLASLSV 553 Query: 597 EIEKQIAQVTAK 608 E +++ + Sbjct: 554 EERRELGDLARS 565 >gi|319899965|ref|YP_004159693.1| DNA primase [Bacteroides helcogenes P 36-108] gi|319414996|gb|ADV42107.1| DNA primase [Bacteroides helcogenes P 36-108] Length = 682 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 160/683 (23%), Positives = 290/683 (42%), Gaps = 80/683 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I++++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQATIDRILDAAQITDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKIIQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F + L N D R Y RG IE F+LGY +S +L + +KG+ Sbjct: 117 NQFARDYFQNILHNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +I+ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KQEYLIKTGLCYET-DDHRVRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGIKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGDD G+ A+ + ID+ L G + LL Sbjct: 286 ASSGTALTSGQIRMIHRFTNNMTILYDGDDAGIHASLRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I ++ + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNATEFQTFIKDNETDFIRFKTNLLLKEADKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRL--------------------QQLFQKYITEHSGYGRYWKKNAR 455 + +R Y + L QQ+ + S Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQTEQQVERAERERRSANAAKENTEYP 462 Query: 456 HRDQKGPSQRLMQSSLV------------KGKLSKKPSLREAALLLTLINHPA------- 496 + + L +GK ++ E +L ++ + Sbjct: 463 NNYPPETFPPEAPTPLPSAAEEYTSFIPQEGKEGQEFYKYERLILQMVVRYGEKIMCNIT 522 Query: 497 ----------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + + +L ++ + N +++ + + + + Sbjct: 523 NEAGKEVPITVTEYIVNDLKEDELAFHNPLHRRILAEAAEHIHNEGFISERYFLAH-PDA 581 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYKRFRLLSRQKEEIEKQI 602 +L +L + + ++ + D + Y+ L + ++ ++S + + I + Sbjct: 582 TISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPTLMINFKYAIVSEELKHIMSAL 641 Query: 603 AQVTAKGEAEKTAILISILHEVH 625 + + ++ +E+ Sbjct: 642 QDPAVINDETRCNNIMKRYNELR 664 >gi|258648570|ref|ZP_05736039.1| DNA primase [Prevotella tannerae ATCC 51259] gi|260851347|gb|EEX71216.1| DNA primase [Prevotella tannerae ATCC 51259] Length = 644 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 160/654 (24%), Positives = 297/654 (45%), Gaps = 51/654 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I+ ++ I +++ YV + N CPFH+EKTPSF + +K Sbjct: 2 IDRQTIQRVMDAADIVDVVKDYVTLRKAGVNL-----KGLCPFHNEKTPSFVVSPTKQLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CF C G+ + FL + ++ E+++ LA G+ + + E+++ I + ++ L Sbjct: 57 KCFGCGKGGNAVHFLMEIEQLTYPEAIKTLAKKYGIEVKEKELSAEEQKSISMRESMLVL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F + L ++D + YL +RG+ I+ F LGY+ SR +L + KG+ Sbjct: 117 NEWACSYFSNLLHESKDGQTIGLSYLRQRGLRDDIIKKFHLGYSSPSRDALAQTALNKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 S++ +++ GL ++ DR+ +R+IFPI S G+VI FGGR + + ++V KY+NSP Sbjct: 177 SKDLLVQTGLC-FETDNHQLRDRYHDRIIFPIHSVSGRVIGFGGRIMQQNKNVGKYINSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E++++ K + LY + A + K LVEGYMDV+++ Q+G++NVV+S Sbjct: 236 ESVIYDKSRELYGLYFAKKAIVK----------EDACYLVEGYMDVIAMHQSGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LTE Q+RLL + + IV+ +DGD G+ A+ + IDL L G + + L GE Sbjct: 286 SGTSLTEGQIRLLHRFTSNIVVLYDGDAAGIHASLRGIDL---LLKEGLNIKVLTLPNGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + F + + + P +R+E + I + + Sbjct: 343 DPDSFARKHSAETFRAYLQAEAVDFIRFKAAMLIKETADDPIKRSESVSDIIRSIAIVPN 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y++ + Q ++E + + + + R Q +S+ + + Sbjct: 403 GITRQTYARECAKLMDIDEQLILSEAAKFRKEERIKGADRPQNNAGNPQKTTSIAESINT 462 Query: 478 ---KKPSLREAALLLTLI----------------NHPAILQEQYQELA--DIRYDNNELQ 516 K +E AL+ +I +I+ ++LA +I+ N Q Sbjct: 463 LTLKAGEEQERALIREIICVGEQKLRFANKHGETKEKSIITFIAEDLAADNIKLQNPLHQ 522 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 K+ + ++ + + + L Q+ A E Q Sbjct: 523 KIIDEAQKEVEQKDFVARDYFINH-----PDADINALAMQLTTASEKLTKAEIEHEKGLQ 577 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + L ++R + ++IE+++ ++ + E L+ H+++ +I + Sbjct: 578 ETVVHILLEYKYRFFKNELKKIEEEMTKLMQAKDYENCRSLM-EQHKIYAEILK 630 >gi|326794300|ref|YP_004312120.1| DNA primase [Marinomonas mediterranea MMB-1] gi|326545064|gb|ADZ90284.1| DNA primase [Marinomonas mediterranea MMB-1] Length = 687 Score = 336 bits (862), Expect = 5e-90, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 239/481 (49%), Gaps = 21/481 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I++++ V + N Y A CPFH+EKTPSF N +K F Sbjct: 4 RIPDQFIDELLARTDITDVVSSRVTLKKTGQN-----YSALCPFHNEKTPSFSLNPNKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SF+ F+E+++ LA AG+ +P + + +L++ + Sbjct: 59 YYCFGCGAGGNAISFVMEHDHLDFVEAIEVLAKDAGLEVPKE-KGAPDRYEQNAELLKRL 117 Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + FF L ++ K+ Y ERG+ +++ LG+AP +L + + ++ Sbjct: 118 TESAHFFQSQLTQSQFKKKATDYLASERGLSGQIAKVYGLGFAPPGWDNLLKAIGKRAEQ 177 Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E+++ G+LI D YDRFR+R++FPIR SRG+VIAFGGR E KYLNSPE Sbjct: 178 QEQLLHGGMLIEKKDQQGQYYDRFRDRIMFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K LY F A + II+VEGYMDV+ L Q G+ N V++L Sbjct: 237 TAVFNKSHELYGLFEAKQ----------NTQNLDNIIVVEGYMDVIVLAQYGITNAVATL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT++ +R L+KL +I LCFDGD G AA + ++ L + G +V F+ L GED Sbjct: 287 GTSVNSQHIRKLFKLVNKITLCFDGDKAGRAAAIRGLEASLPVMQDGKQVRFLFLPDGED 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-D 417 PDS +R G+ AF+ + ++ L ++L++ + + + AE + + I I D Sbjct: 347 PDSLVRQEGQDAFQARLEDANSLANVLFEHARNQVTLDHEEGDAEFARNAMSLIQQIPND 406 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + + + R A Q PSQ + + + + Sbjct: 407 ITYRSVLLKQLSKESGIEKETLNQVAIPTKRSSYTEAARNQQNEPSQHAYSNEIQADQRN 466 Query: 478 K 478 Sbjct: 467 D 467 >gi|2760547|emb|CAA63931.1| DNA primase [Synechococcus elongatus PCC 7942] Length = 616 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 165/565 (29%), Positives = 262/565 (46%), Gaps = 38/565 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + I +++ + V +R D+ CPFHD+K+PSF + +K F Sbjct: 5 RLHPETIAAVKERADIVDIVSEQVVLKKRGK-----DFVGLCPFHDDKSPSFTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 YYCFSC G+ + FL L SF E V LA VP+ +++++ + L Sbjct: 60 YYCFSCGAGGNPIKFLMELGKQSFSEVVLDLAKRYQVPVRTLEVQQHQELQRQLSRRERL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VAT F+ SL+ YL R + I+ F+LGYAP SL H + Q Sbjct: 120 YEVLAVATQFYEQSLRRPEGAAALDYLRRSRQLQESTIQKFQLGYAPAQWASLATHLIEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K F + + EAGL++ N YDRFR+RL+ PI +G+V+AFGGRTL GE KYLN Sbjct: 180 KRFPADLVEEAGLVVARRNGQGYYDRFRDRLMIPIHDLQGRVVAFGGRTL-TGEEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK L+ A + K ++VEGY DV++L AG+ + V Sbjct: 239 SPETTLFEKGKLLFGLDKARAAIAKQ----------DQAVVVEGYFDVIALHAAGIDHAV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGTAL+ Q++LL + S +IVL FD D G +AA +AI V G ++ + Sbjct: 289 ASLGTALSRQQVKLLSRYSESNQIVLNFDADRAGAKAAERAIGEVEDLAYQGQVQLRVLN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+D D +++ + + +L+ S +D + +R+ + D+ + + + Sbjct: 349 LPGGKDADEYLQRHSVADYRELLARSPLWLDWQIDQLLRDRNLDQADQFQAVVQAIVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + LR +Y + +RL Q + + + R + R Q S Sbjct: 409 GKLPNTPLRTHYVHQVAERLSQGEARTAVQLASDLRAQVRGQRWHGQ--------ASRWE 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFLFSDFVEQ 529 K EA +L ++ P + + L D + + LW + E+ Sbjct: 461 KPGDVSIREQAEAQILKVYLHCPRLRLAVRKTLHDREIQGFSLQPHRLLWQAIAEI--EE 518 Query: 530 KYFLPEEIHQRLCERGFGELLKQLD 554 + ++Q G G+ L +D Sbjct: 519 AHLGFAAMYQVERGEGNGDDLAAID 543 >gi|77412515|ref|ZP_00788813.1| DNA primase [Streptococcus agalactiae CJB111] gi|77161429|gb|EAO72442.1| DNA primase [Streptococcus agalactiae CJB111] Length = 593 Score = 336 bits (862), Expect = 6e-90, Method: Composition-based stats. Identities = 154/635 (24%), Positives = 275/635 (43%), Gaps = 48/635 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + Sbjct: 1 MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 F++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ Sbjct: 56 FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A + K + + L+EG+MDV++ +AG++NV Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ F++L+ + + + + + + I Sbjct: 340 NKMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + R ++ + + +Q L + Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQT 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE------- 509 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + +++R E +I ++ + ++A + R L +Q Sbjct: 510 ------ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 563 ----SQLIRQSSNQGDQEGALAALENLIAQKRNME 593 >gi|187736114|ref|YP_001878226.1| DNA primase [Akkermansia muciniphila ATCC BAA-835] gi|187426166|gb|ACD05445.1| DNA primase [Akkermansia muciniphila ATCC BAA-835] Length = 599 Score = 336 bits (861), Expect = 6e-90, Method: Composition-based stats. Identities = 157/636 (24%), Positives = 273/636 (42%), Gaps = 45/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ +L I +++G Y+ R + + ACCPFH+EKTPSF + S+ Sbjct: 3 RIDEDSIRRVLEATDIVDVVGSYLPLKRAGS-----RWKACCPFHNEKTPSFIVDQSRQN 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 + CF C G ++F+ + F ++V+RLA AG+ + V D E++ K +T L+ Sbjct: 58 FKCFGCGEGGSAITFVMKMENLGFADTVRRLAEKAGISIVEEVYDAAEERRRKARTALLV 117 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FFH L + + YL+ RG + + +++G+APDS R++G Sbjct: 118 AHKKAAGFFHRLLLCSPKAAEARAYLNSRGYGADMAKRWQVGWAPDSSREFLAWARREGI 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 ++ +I++GL G+ Y RFR+RL+FPI + G+ +AF GR L E+V KY+NSP Sbjct: 178 PDQVLIDSGLANRGERGD-LYARFRDRLMFPINNVYGECVAFSGRILRPQENVGKYVNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F KG ++ A + KS + +L EG +DV++ +AG+ V+ Sbjct: 237 ETAIFKKGDVVFALDKARGPMGKSGKA----------LLCEGQIDVIACHEAGISFAVAP 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA T R+L + + RIVLCFD D G+ AA +A + G + V L G+ Sbjct: 287 LGTAFTPEHARILSRYASRIVLCFDADKAGMAAADRAFRELAPF---GKDIYLVNLPAGD 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF++ GK AF ++ + ++ +R E+ + A + + + D Sbjct: 344 DPDSFMKREGKEAFSGMVERARSFFEVRIERARESGLLDDAASSAAFAREMTALLACMSD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + + R++ GR + ++ ++ + Q VK + Sbjct: 404 SVARDLATADVATRMRMAADNLRGAVRMAGRRKGQEQAQSAERKTAEEVPQHPPVKMDRA 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPE 535 A L + + + ++ ++ L L Sbjct: 464 V------AVLCELALQNSRAQGLIVDRIEELL---EPMRLLQGGGILKKILARLPSPD-- 512 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L L + RDA I DV + Q+A + + L R Sbjct: 513 ------SPAAVQAFLVSLPQPERDALGMLNLEPIPIPDVDRSVQEACSGIAKA-ALERHI 565 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ +A + L + ++ + + Sbjct: 566 ASLMAEL--ADPSTDAARRLELSKLSVDLKRLLGTM 599 >gi|306825380|ref|ZP_07458720.1| DNA primase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432318|gb|EFM35294.1| DNA primase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 591 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNTNIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + ++ L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPQQASPHQALYDMHEE 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K F E+ Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLSDK-FEEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + YD F R+IFP+ + +GQVIAF GR + +S KY NS T Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDSQTAKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA +L + +P +L + + D +D E Q L+ L Sbjct: 462 MRAEAHILYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E + ++ + + + LLS+ I+K Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEETRNRALLSKDNLRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591 >gi|225026957|ref|ZP_03716149.1| hypothetical protein EUBHAL_01213 [Eubacterium hallii DSM 3353] gi|224955722|gb|EEG36931.1| hypothetical protein EUBHAL_01213 [Eubacterium hallii DSM 3353] Length = 502 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 151/483 (31%), Positives = 236/483 (48%), Gaps = 27/483 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I ++ I ++I YV +R +N Y CPFH+EK+PSF + K Sbjct: 1 MRYEEELIDEVREKNDIVDVISSYVSLKKRGSN-----YVGLCPFHNEKSPSFSVSRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118 YYCF C G+ +FL SF+E++Q LA AGV LP + E++++ + L Sbjct: 56 MYYCFGCGQGGNVYTFLMEYNRLSFVEALQNLAQRAGVELPEREQTAEERQQADARVTLR 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A +FH+ LK+ R + YL RG+ I F LGYA R L ++LR KGF Sbjct: 116 DMNKEAAIYFHYLLKSERGTQALSYLKNRGLSDETINHFGLGYADIYRDDLYQYLRSKGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ ++ E+ L ++ D +YD+F NR+IFPI +VI FGGR + KYLNS E Sbjct: 176 TDYQMKESSL-VNIDTVKGNYDKFFNRVIFPIMDMNQRVIGFGGRVM-GDGEPKYLNSRE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF KG+NLY A S+ IIL EGYMDV+SL QAG N V+ L Sbjct: 234 TILFDKGRNLYGLNYAKRS------------RSNAIILCEGYMDVISLHQAGFTNAVAPL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T Q LL + + ++L FD D G++AA +A+ + G R + + +D Sbjct: 282 GTAFTPNQAMLLKRYTNEVILSFDSDGAGIKAALRALPI---LRQNGLRGRVLSMKPYKD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD I+ G +++K I E+ + P+ R E + + I++ Sbjct: 339 PDELIKAEGAESYQKRIDEAESGRMFELLVLYGQYNQQDPESRTEFLHEVAKKLAQIEEP 398 Query: 419 KLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y + +R + + + + +Y + N +++ +R + ++ Sbjct: 399 LERQTYLTSAANRFMIRKNDLENLVNRYGLGYQYEQVNEQYKTAPETEERRQEKKKIRKT 458 Query: 476 LSK 478 + Sbjct: 459 SHR 461 >gi|294674654|ref|YP_003575270.1| DNA primase [Prevotella ruminicola 23] gi|294473538|gb|ADE82927.1| DNA primase [Prevotella ruminicola 23] Length = 643 Score = 336 bits (861), Expect = 8e-90, Method: Composition-based stats. Identities = 158/670 (23%), Positives = 285/670 (42%), Gaps = 70/670 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I +L I +++G++V + N Y CPFHD+KTPSF + +K Sbjct: 2 IDRQTIDKILDATNIVDVVGEFVTLRKSGVN-----YKGLCPFHDDKTPSFMVSPTKQIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G ++FL ++ E+++ LA + + + ++++ + + + Sbjct: 57 KCFSCGEGGTAINFLMKHEQITYPEALRWLAKKYNIEIQEKELTEEEKREQSDRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++F L N D Y RGI +E F LG++ R +L ++ G+ Sbjct: 117 NEWAMNYFKDVLNNDPDGVAIGRQYFRSRGIRDDIVEKFNLGFSLSKRDALDIAAKKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 EE +I+ GL I YDR+ R+IFP + G+V+AFGGR L KG KY+N Sbjct: 177 QEEFLIKTGLCIK--GEKGVYDRYAGRVIFPWFNVSGKVVAFGGRLLDARTKGVQQKYVN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY + + K + +VEGY DV+++ Q G++NVV Sbjct: 235 SPDSEIYHKERELYGLYQGKKAIAK----------EDCVYMVEGYTDVIAMHQCGLENVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL++YQ++LL + +P I+L +DGD+ G+ AA + D+ L G +V +LL Sbjct: 285 ANSGTALSKYQIKLLRRFTPNIILLYDGDEAGIHAAMRGTDM---LLAEGMKVKVLLLPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F+ I E + +K + + + P +R+E + I+ + Sbjct: 342 GDDPDSFSRKHTAQEFKAYIEEHAEDF-ISFKTKLTVENVSDPVKRSEAIGGIVKSISVV 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D LR Y + RL + + +G ++ + +Q +Q Sbjct: 401 DDNLLRDEYLTQLSRRLGIKEETLLQSMNGMISRDREEKEKEYNREQTQNAIQQEREAQG 460 Query: 476 L---------SKKPSLREAALLLTLINHPAILQEQYQEL--------------------- 505 S + E L+ T++ + Y+ L Sbjct: 461 KPMAIGLHTISDQIQQVEDLLIKTIVRDGE--KIIYENLQTEDGQTINLSVAQFISYDMG 518 Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + + K+ + + E+ + E + + + + + G Sbjct: 519 EDGLSFSKPVYNKILQEVVAHCGEEGFKAEEYLTRH-TDYEISSIAASMAVDSYQLGKGF 577 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI---- 620 E +R + + L R+ L + +E+ I + +G+ T Sbjct: 578 QLKEREGG-LRSHVEH-IVLDFRYYCLGAKVKELLASIKK--GEGDVMATLAEYQHVDLI 633 Query: 621 LHEVHIQIHQ 630 EV ++ + Sbjct: 634 YKEVAKKLGR 643 >gi|325268824|ref|ZP_08135449.1| DNA primase [Prevotella multiformis DSM 16608] gi|324988796|gb|EGC20754.1| DNA primase [Prevotella multiformis DSM 16608] Length = 643 Score = 336 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 150/666 (22%), Positives = 274/666 (41%), Gaps = 54/666 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +I +V + T Y CPFHD++TPSF + +G Y Sbjct: 2 IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVRGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + +++E + + + Sbjct: 57 KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L N D Y RG I F+LG+ R++ + + GF Sbjct: 117 NEWAVKYFEDILHNDVDGMAVGMQYFRSRGFRDDIIRKFRLGFCLSGRHAFADAALKAGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + +++ GL + DRF R++FP G+V AFGGR L KG S KY+N Sbjct: 177 QRDFLVKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVSQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+++++HK + LY F A + K + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+RLL + + IVL +DGD G AA + D++L G V +LL Sbjct: 286 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R + F + I ++ + N + + +++ Sbjct: 343 GKDPDEFARSHSAEDFRRYIEDNQTDFIVFKINVLLNGVTDPVKRSEAVSSIVRSVSVI- 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH-SGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 KD LR Y + +R + + + ++ R + Q+ + + Q+ Sbjct: 402 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSDREQQTREQQQRAAALQQQQTDGQAS 461 Query: 475 KLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNN 513 + E L+ ++ I ++ E ++ + + Sbjct: 462 VPVPQVPQVEQMLMQVIVRDGEKIIFRDVKDEASGQLYSLTVAQYIAFDLGSDNLGFSDP 521 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANIV 572 ++ E+ + E Q + +K +DR L TE + Sbjct: 522 LYTRMLREAVEHSGEENFRAEEYFMQHADIQIASAAVKLGVDRFQLSESLQVKETEKTLC 581 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 D +A + R +S +E+ ++ Q E KT I + + ++ + Sbjct: 582 D---RVVHLIADF-RLDYVSSHLKELNARLLQTKDPEEMTKTMEEIMKMQTLRNKLAKKL 637 Query: 633 SQEAMI 638 + ++ Sbjct: 638 GSDILV 643 >gi|325853097|ref|ZP_08171246.1| DNA primase [Prevotella denticola CRIS 18C-A] gi|325484471|gb|EGC87392.1| DNA primase [Prevotella denticola CRIS 18C-A] Length = 644 Score = 336 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 151/667 (22%), Positives = 275/667 (41%), Gaps = 55/667 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +I +V + T Y CPFHD++TPSF + +G Y Sbjct: 2 IDRPTVDRIMNAANIVEVISDFVSLRKAGT-----SYKGLCPFHDDRTPSFSVSPVRGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + +++E + + + Sbjct: 57 KCFSCGAAGNVVKFIMEHEQMTYPEALKWLANKYHIEVHERELTTEEKQQENERESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L N D Y RG I F+LG+ R++ + + GF Sbjct: 117 NEWAVKYFEDILHNDVDGMAVGMQYFRSRGFRDDIIWKFQLGFCLSGRHAFADAALKAGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + +++ GL + DRF R++FP G+V AFGGR L KG + KY+N Sbjct: 177 QRDFLVKTGLC-FERENGELVDRFNGRVMFPWIGVSGKVTAFGGRLLDARTKGVTQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+++++HK + LY F A + K + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSVIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVVSMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+RLL + + IVL +DGD G AA + D++L G V +LL Sbjct: 286 ANSGTALSVHQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R + F + I ++ + N + + +++ Sbjct: 343 GKDPDEFARSHCAEDFRRYIEDNQTDFIVFKINVLLNGVTDPVKRSEAVSSIVRSVSVI- 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVK 473 KD LR Y + +R + + + + Y ++ + Q+ R Q Sbjct: 402 KDPILRDTYIRECANRTGVSERTLMEQMNRNIYSNREQQTREQQQQRAAVIRQQQVEEQA 461 Query: 474 GKLSKKPSLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDN 512 ++ S E L+ ++ I ++ E ++ + + Sbjct: 462 TVPVRQVSKVEQMLMQVIVRDGEKIIFRDVKDEESGQLYSLTVAQYIAFDLGSDNLGFSD 521 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571 ++ E+ + E Q + +K +DR L TE + Sbjct: 522 PLYTRMLREAVEHSGEENFRAEEYFMQHADIQIASAAVKLGVDRFQLSESLQVKETEKTL 581 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 D +A + R +S +E+ ++ Q E KT I + + ++ + Sbjct: 582 CD---RVVHLIADF-RLDYVSSHLKELNARLLQTKDPEEMTKTMEEIMKMQTLRNKLAKK 637 Query: 632 ESQEAMI 638 + ++ Sbjct: 638 LGSDILV 644 >gi|291557422|emb|CBL34539.1| DNA primase, catalytic core [Eubacterium siraeum V10Sc8a] Length = 586 Score = 336 bits (860), Expect = 8e-90, Method: Composition-based stats. Identities = 140/556 (25%), Positives = 239/556 (42%), Gaps = 25/556 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M DF+ ++ I ++I YV + T DY CPFH EKTPS H + Sbjct: 1 MRLSEDFLLNIKESNDIYDVISSYVPLKKSGT-----DYVCNCPFHSEKTPSCHIYMATQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD ++F+ ++ESV+ LA AG+ +P + K +T + Sbjct: 56 SFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAYEM 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + K YL RG+ H I + LGYAPD+ SL++H+ G+S+ Sbjct: 114 NREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ EA LL S +D F+ R++FP RG ++ F GR + ++ KYLN+ T Sbjct: 174 SEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGDDNRKYLNTKATA 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +++K LY+ A N S +I+ EG +DV+S+ QAG +N V++ GT Sbjct: 234 VYNKSTFLYSLNHAKNA------------GESVLIMCEGNLDVISMYQAGFKNAVATCGT 281 Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 A+T+ R + +++L +D D G +A +A+++ G N + + +DP Sbjct: 282 AITDSHARNIANLGFRKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +I+ +GK AF+ LI S +D K+ + P ++E I +I Sbjct: 339 DEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVGFIANINSPI 398 Query: 420 LRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y I + + R + +R + Sbjct: 399 DRAVYISTIAQECDVNRANVDIAVNQIIAKRNKTREKDNRRAILNGSVNRDKINPEASRY 458 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E ++ L + P L++ +++ + ++L+ L + + Sbjct: 459 PAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVSML 518 Query: 538 HQRLCERGFGELLKQL 553 R + K + Sbjct: 519 ADRYSAEEVASIYKLI 534 >gi|302036355|ref|YP_003796677.1| DNA primase [Candidatus Nitrospira defluvii] gi|300604419|emb|CBK40751.1| DNA primase [Candidatus Nitrospira defluvii] Length = 614 Score = 336 bits (860), Expect = 9e-90, Method: Composition-based stats. Identities = 164/635 (25%), Positives = 271/635 (42%), Gaps = 51/635 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I + + I+ ++GQ+V R N CPFH EK+PSF + S+ + Sbjct: 6 ISDDVINQIRDRVDIAEIVGQHVALTRTGQNL-----KGLCPFHQEKSPSFTVSSSRQIF 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLI 121 +CF C G+ +FL L G F E V+ L GV +P + + Q + RL Sbjct: 61 HCFGCGAGGNVYTFLMKLTGAGFPEIVRDLGRKVGVDVPESAGGYSSEARTQLGRIERLN 120 Query: 122 EVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + YLD RGI + I F++GYAP L + + ++GF+ Sbjct: 121 AAAGAYYQRMLLDHTAGAPARAYLDGRGIHHNTIAQFQIGYAPQEWDGLTKAMLKEGFTP 180 Query: 181 EKIIEAGLLIDGDNS-------ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 ++ AGL I D S + YDRFR+R++FPI R +V+AFGGR L +G KY Sbjct: 181 ADLVAAGLSIPRDQSGQQKTAASGHYDRFRSRVMFPIVDLRKRVVAFGGRILGEG-MPKY 239 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF KG+ L+ A +I+VEGY D ++L QAG+++ Sbjct: 240 LNSPETPLFKKGQTLFALEAAREAA----------GQQHTLIIVEGYFDAVALHQAGIRH 289 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V ++LGTALT + ++ + + +VL FD D G+RAA + +DL + G V V L Sbjct: 290 VAATLGTALTAEHITVIRRFASNVVLLFDPDQAGVRAALRTLDL---FVNSGLSVTVVSL 346 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD+++R YG F L + L+D + T ++R + + Sbjct: 347 PEGDDPDTYVRKYGADGFTTLHQAAPSLLDFAVEHSLRTAESGTVEDRIRAVDAVLRILQ 406 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R + + +RL Q+ I + + R P+ Sbjct: 407 KSAHPIEREERIRLVAERLGLSQQRLIDRYPTLASEETRRPSPRPAVTPAV--------- 457 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E L L+ ++ E + L+ + + ++L + Sbjct: 458 ASPKPKANPEERDLAHLLVQ-GSLSAEDLRRLSPDAFSASAYRRLIECALQHREQDGRVS 516 Query: 534 PEEIHQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + L ++ G L+ +L + +E + DV L +R R Sbjct: 517 VRGLLDTLINDQECGSLVSEL-----------SMSEQHYDDVPAHIAGCLDTLER-RGRE 564 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R + +++ + L +++E+ I+ Sbjct: 565 RTMGALIQELKAAERERREADVHRLNRLINEMRIR 599 >gi|270292886|ref|ZP_06199097.1| DNA primase [Streptococcus sp. M143] gi|270278865|gb|EFA24711.1| DNA primase [Streptococcus sp. M143] Length = 591 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 146/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + ++ L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPQQASPHQALYDMHEE 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL ERG+ ++ F++G AP R L + L K F E+ Sbjct: 123 AARFYHAILMTTKMGEEARAYLYERGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPETI 240 ++++GL + YD F R+IFP+ + +GQVIAF GR ++ KY NS T Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQEADNQTAKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFFIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L + Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELL-------------SVEGE 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E + ++ + + + LLS+ I+K Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEATRNRALLSKDNLRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591 >gi|126666519|ref|ZP_01737497.1| DNA primase (bacterial type) [Marinobacter sp. ELB17] gi|126628907|gb|EAZ99526.1| DNA primase (bacterial type) [Marinobacter sp. ELB17] Length = 578 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 174/600 (29%), Positives = 276/600 (46%), Gaps = 40/600 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F++DLL I ++ LIG V + N Y ACCPFHDEKTPSF+ KGFY Sbjct: 5 IPQRFVEDLLDRIDLAELIGSRVTLKKAGAN-----YKACCPFHDEKTPSFNVRPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SFL G F E+V+ LA AG+ +P D +++ + L ++ Sbjct: 60 HCFGCGAHGDAISFLREFEGLGFTEAVEDLARRAGMEVPY-DQAAKQEMQQTRTLTEALD 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A+ F+ +L + YL +RG+D I+ ++LG+AP +L + Sbjct: 119 FASLFYQQALSSEAGAFARDYLQQRGLDPAIIQQYQLGFAPAGGTALCDAAGTSFKEPLL 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + D D FRNR++FPIR++RG+ IAFGGRTL + KY+NSPE+ +F Sbjct: 179 ETKT----VSDQYGRPRDLFRNRVMFPIRNTRGKTIAFGGRTL-GDDKAKYINSPESDVF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK + +Y + A L++ +++VEGYMDV++L Q G++ V++LGTA Sbjct: 234 HKSREIYGLYEARQNLKQL----------DKLLVVEGYMDVIALAQHGIKFAVATLGTAT 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L L + IV CFDGD G AA +A++ L + G + F+++ +GEDPD+ Sbjct: 284 NQDNLSALMRQVRHIVFCFDGDTAGYHAADRALENALELMADGLHLQFLMMPQGEDPDTL 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR G AF K I ++PL L+ R+++ P+ R EL + +N + LR Sbjct: 344 IRKEGAEAFSKRIEAAIPLSRYLFDRQSDGLDLQLPEHRGELRARAEPMLNKMPKCTLRD 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + Q G ++ +L + SL Sbjct: 404 AMWHEMLRLCNGRDQWQKKPWQERGGNKGWQRERIQEQRIDVKLSKDSL----------- 452 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L L L P + E + A + S++ + + L + + Sbjct: 453 ----LCLALTEAPDLAAEVAEA-ARGSRQFIQAAAFASWILERKLANQPALISALATDVQ 507 Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIE 599 R F L ++ R+ L +A + + Q+ AL + F LS ++ E+ Sbjct: 508 ARDRFFHLFDGIEHIPAREHTLEAARELLSPDEEASRQQRLAALLRNFVNLSPEERSELR 567 >gi|120437120|ref|YP_862806.1| DNA primase [Gramella forsetii KT0803] gi|117579270|emb|CAL67739.1| DNA primase [Gramella forsetii KT0803] Length = 652 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 162/664 (24%), Positives = 267/664 (40%), Gaps = 64/664 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I ++ + +IG +V R +N PF DE++PSF + K + Sbjct: 2 ISRTTIDNVFETARVEEVIGDFVQLKRSGSNL-----KGLSPFTDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G+ ++FL ++ E+++ LA G+ + + E+KE + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFNYPEAIKYLAKKYGIEIEETEQSDEQKELANERESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + + + Y ERG + I+ F LGY+PD + G+ Sbjct: 117 SEYANKFFQKKMHETDEGQAIGLSYFKERGFSAETIKKFDLGYSPDDWEIFTKTALDDGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 E + + GL I +DRF+ R++FPI S G+V+ FGGR LS + KYLNSP Sbjct: 177 KLEFLEKTGLSIV--KENKRFDRFKGRVMFPIHSMSGRVLGFGGRILSNTKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ Q+G++N VSS Sbjct: 235 ESDIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQFHQSGIENTVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G RA+ + IDL L G V GE Sbjct: 285 SGTALTPEQIRLINRLTKNITVLFDGDAAGTRASLRGIDL---ILEQGMNVKVCPFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + E+ + S N P ++A L + N I I D Sbjct: 342 DPDSFARANNEDELREFLEENSYDFITYKASLLMDESKNDPVKKAGLIRDMVNSIAKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y Q R+ + + + + +K + + + S K K+ Sbjct: 402 NIQREVYLQECS-RIMDISEDVLYATLAQIEKKDNPSSGGSKKRKMEVVKEESTPKVKI- 459 Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL-------------------------------A 506 + E ++ L+ + +E L Sbjct: 460 DHLYILERNIIKILLLYGNKEEEFEDLLLKQNEDTGELELEPEKQSSKVFEKIYLDLQED 519 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 +I + N + +KL+ L + + E I L E+ L ++ + Sbjct: 520 EIAFSNEDFRKLYQLLITKLNSEDEVAIENIINDLETSQSKEVTDILMQEEQYELHNWDR 579 Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL---ISI 620 + + + Q Q + L R L+ ++ E+ + I + E + Sbjct: 580 HDIPVKNKEQTVNQFVSQTILNLRRHLIDKKLNELLEDIRIAETEDERTDIKNEVMGFNK 639 Query: 621 LHEV 624 L + Sbjct: 640 LRTL 643 >gi|325983603|ref|YP_004296005.1| DNA primase [Nitrosomonas sp. AL212] gi|325533122|gb|ADZ27843.1| DNA primase [Nitrosomonas sp. AL212] Length = 599 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 181/652 (27%), Positives = 304/652 (46%), Gaps = 81/652 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I + I ++V + N Y ACCPFH+EKTPSF + SK FY Sbjct: 2 IPQTFIHDLLNRADIVDTIDRHVSLKKAGAN-----YVACCPFHNEKTPSFTVSQSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL G SF+E+V+ LAA G+ +P+ ++ Sbjct: 57 HCFGCGAHGSAIHFLMEYSGLSFVEAVRDLAASVGMQVPIQQAGTPANSAVRNDSEYFAS 116 Query: 115 -----------TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 DL+ ++++AT F+ LKN+ ++ YL +RG + F +GYAP Sbjct: 117 DHYTNDPAISSQDLLNVMQIATRFYREQLKNS--EKAIAYLKKRGFSGESAARFAIGYAP 174 Query: 164 DSRYSLREHLR--QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 +L+ + + +++AGL+I G + YDRFRNR++FPI + +GQ+I FG Sbjct: 175 AGWQNLQTVFSDYKSEKTRNLLVQAGLVIVG-DEDKQYDRFRNRIMFPILNQKGQIIGFG 233 Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 GR L E KYLNSPETILF KG+ LYN F A ++ + ++VEGYM Sbjct: 234 GRVL-DDEEPKYLNSPETILFEKGRELYNLFSARRAIR----------EVNCALVVEGYM 282 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 DV+SL Q G+ V+SLGT+ T + L+ L + + +I+ CFDGD G +AA++A++ L Sbjct: 283 DVISLAQYGIDYTVASLGTSTTSFHLQKLLRQTDQIIFCFDGDKAGRKAAWRALENSLAL 342 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401 L G ++F+ L G DPDS+I+ G+ +FE+L+ +S+PL + L+K T + R Sbjct: 343 LSDGKLLSFLFLPEGTDPDSYIKKNGRKSFEQLLKQSIPLSEFLFKELCSRIDIQTSEGR 402 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 A+L K + + L + + + + + K R K Sbjct: 403 AKLINDAKPLLQQVTAAALSLMLLKRLAELSNIDQSELEEKLQIKPSSKKYVTRKAPPKQ 462 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWS 520 + L++ L+++P + + ++ + ++ E+ L S Sbjct: 463 LATPY------------------RRLIMMLLHNPNYINRLNRNWFSEEKENSKEITALKS 504 Query: 521 FLFSDFVEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 L F + + + E+ L + LL+ ++ + D Sbjct: 505 -LIELFDKNPHLINSELPTSTIFAYLQDSAHRTLLENIESETLKW-----------DDAI 552 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + L ++ + R +K+I ++ +K + T L ++ ++ Sbjct: 553 DLEAEFLGTLEKLQQAQR-----KKRITELYSKPLSMLTNDEKRELQQLAMR 599 >gi|298252573|ref|ZP_06976367.1| DNA primase [Gardnerella vaginalis 5-1] gi|297532937|gb|EFH71821.1| DNA primase [Gardnerella vaginalis 5-1] Length = 691 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 138/707 (19%), Positives = 248/707 (35%), Gaps = 97/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G + CPFHDEKTPSF S G + Sbjct: 5 IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119 +CF C GD ++ F E+V+ LA + + + + + + L+ Sbjct: 61 HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNNDSQARGSKRARLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF +L L R F GYAP +L +L KGF+ Sbjct: 121 ANEEAQKFFVSNLGTKEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++++AGL G YD FR RL +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 181 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+ K + LY A + K +++VEGY DV++ AG+ V++ Sbjct: 239 DTALYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 288 Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335 GTA +++ + +S RIV FDGD G +AA A Sbjct: 289 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 348 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L L + + DP G A L+ + PL D + Sbjct: 349 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 405 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451 + + + I I+D+ L Y + + E R K Sbjct: 406 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 465 Query: 452 --------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +NA + + + + ++ + E + L Sbjct: 466 DAYAQKHNVIPPFGQQIHDDRNAGFKASRMEIIKSSAKNQHYYRVDDAVFMCEQQFMALL 525 Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + P E + +L + + L+ + + + + + + G LL Sbjct: 526 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 585 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------------------ALYKRFR 589 + + ++ L + + D Q + L R Sbjct: 586 ESVITELSVMPLPLPSPADTLEDTGNRQNQQVSNGSPSDFLRKATSAESKYANELLIRLL 645 Query: 590 LL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + R+ ++A++ + ++ L+ + + ++SQ Sbjct: 646 DIGYMRRIGAARVRMAKLK---DGQEKLELLGKITSMEAARKNLQSQ 689 >gi|262199545|ref|YP_003270754.1| DNA primase [Haliangium ochraceum DSM 14365] gi|262082892|gb|ACY18861.1| DNA primase [Haliangium ochraceum DSM 14365] Length = 605 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 161/639 (25%), Positives = 268/639 (41%), Gaps = 53/639 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P D + ++ I +IG +V + N + CPFH EKTPSF+ N K F+ Sbjct: 4 IPEDTVHEIRERADIVAVIGDHVSLRKAGRN-----HKGLCPFHHEKTPSFNVNGDKRFF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI---EKKEKIQTDLIR 119 YCF C KGD +F+ G SF E+ + LA+ G+ +P P+ ++ ++ ++ Sbjct: 59 YCFGCQKKGDVFTFVMEYEGKSFTEAAETLASRFGISIPESRPESPALRRQRGERSRMLE 118 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +AT+FF L++ R YL ERGID F+LGYAPD L E L +K Sbjct: 119 INALATEFFAAVLRDPERGAPGRAYLAERGIDEATANSFQLGYAPDQWRELGEFLERKRV 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-------- 230 E + GLL+ + YDRFR+RL+ P+ G+V F GR L E Sbjct: 179 PAELAAKVGLLVKQPRAGGYYDRFRHRLMCPVVMPGGEVAGFSGRLLPSPEQDEDDERKG 238 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KY+NSPE+ ++ K + L+ A + ++ R +LVEG DV+ + Q G Sbjct: 239 AKYINSPESPVYKKSRLLFGLHLARDAFREKRRA----------VLVEGNFDVIHMHQHG 288 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+ LGTALT+ Q+ L +L+ +VL +DGD G A KA++ + +V Sbjct: 289 FAEAVAPLGTALTDEQIGQLRRLADEVVLLYDGDKAGRAATLKALE---ALVASDTKVRI 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L G DPDS + + + + P ++ + + RS + D R+E Sbjct: 346 AALPAGADPDSMLLTGRVQELAESLTRAQPAIEY-FVHDVWTRSARSADGRSEALDEAAR 404 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR--LMQ 468 + H+ + R I + + + + + + R + +R Sbjct: 405 LLVHVTNPTKRDLIIDTIANGMSVSPELVRRAMQRGNQRGDQRNQGRHRDADERRFEQPP 464 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + P E LL L +HP +L E ++ + + + +L F+ Sbjct: 465 PPQPPAAPVQPPPREELNLLAILADHPDLL-EVAEDKEVVSFLTD--GRLRDIYFAARQG 521 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 G L+ + A T A++ D +AL + Sbjct: 522 SSMLSSA-------PEDIGPLIAK---------YVLAGTYASVEDPAHCLDEALQRLRAG 565 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R +R ++++KQ +G+ L+ + + Q Sbjct: 566 RSRTR-LQQLQKQAYDARRRGDVALERRLVGEILKTRRQ 603 >gi|331266529|ref|YP_004326159.1| DNA primase [Streptococcus oralis Uo5] gi|326683201|emb|CBZ00819.1| DNA primase [Streptococcus oralis Uo5] Length = 586 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 146/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + ++ L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRSQQASPHQALYDMHEE 117 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K F E+ Sbjct: 118 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + YD F R+IFP+ + +GQVIAF GR + +S KY NS T Sbjct: 177 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDSQTAKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 286 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 341 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 401 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L Sbjct: 457 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E + ++ + + + LLS+ I+K Sbjct: 503 IASEELSHQTPEVENAWYHVLSLDLPVEMSPQELAE-----VEATRNRALLSKDNLRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELQRLISQKRRME 586 >gi|296136131|ref|YP_003643373.1| DNA primase [Thiomonas intermedia K12] gi|295796253|gb|ADG31043.1| DNA primase [Thiomonas intermedia K12] Length = 624 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 178/661 (26%), Positives = 277/661 (41%), Gaps = 78/661 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI+DLL I ++GQYV+ + TN Y CPFH EKTPSF + SK F Sbjct: 4 RIPPGFIQDLLARADIVEVVGQYVELKKTGTN-----YKGLCPFHGEKTPSFTVSASKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQT 115 Y+CF C G + FL G F+++V+ LA G+ +P D +++++ +Q Sbjct: 59 YHCFGCGAHGTAIGFLMEHAGMGFVDAVKELAGRYGMTVPEPDLDPQQLRQLQQQRSLQA 118 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ ++ A F+ H L+ +R YL RG+ + F LGYAPD L Sbjct: 119 TLVDALQTADGFYQHRLR--HSERAKNYLIARGLQGQVAKKFGLGYAPDDWQPLAGAFAN 176 Query: 176 KGFSEEKIIEAGLLID------------GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223 + D ++ YDR R+R+ FPIR+ RG+VI FGGR Sbjct: 177 YNADALVQSGLVVARDAAGDTLDPQAESFASAQRRYDRLRDRITFPIRNLRGEVIGFGGR 236 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 + +GE KYLNSPET +FHKG+ LY F A + + + + + ++VEGYMDV Sbjct: 237 IIDQGEP-KYLNSPETAVFHKGEELYGLFEARSAISR----------AGYALVVEGYMDV 285 Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 ++L Q GV+ V++LGTA T QL+ L++ + ++V FDGD G RAA +A++ L L Sbjct: 286 VALAQFGVEQAVATLGTACTAQQLQKLFRHTGQVVFSFDGDTAGRRAARRAMEQALPLLS 345 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 V F+ L DPDS++R G AFE+ I + PL + L+ + + T + RA+ Sbjct: 346 DTRVVKFLFLPAEHDPDSYVREKGAEAFEREIGRAQPLSEFLFSSLFDGVAMTTAEGRAQ 405 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 ++ I L + RL+ + R Sbjct: 406 AIHEAGPLLSQITAPALLGQLVADLARRLEMPATELREVL-----------RLSSPSRKP 454 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPA----------------ILQEQYQELAD 507 +S +G + L P + A Sbjct: 455 SAPAESFGTRGMKTAPRVRGGREALRAFAAVPKDPLRQLLPLLLSQPELWWSINPAQHAL 514 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + + LQ L L S +Q + + L G + + + Sbjct: 515 LSLEPGPLQGLVLTLESILEDQPELSAAALWEALRAAGHA-----------PEEMLAESP 563 Query: 568 EANIVDVRQGYQQALALYKRFR--LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + +D Q LA+ R L R+++E+ + A + + L L E+ Sbjct: 564 DPLELDEAAAKQDLLAILSRLERAALKRRQDELVA--GGLVADADRTEYRSLALRLKEID 621 Query: 626 I 626 Sbjct: 622 Q 622 >gi|212716822|ref|ZP_03324950.1| hypothetical protein BIFCAT_01761 [Bifidobacterium catenulatum DSM 16992] gi|212660107|gb|EEB20682.1| hypothetical protein BIFCAT_01761 [Bifidobacterium catenulatum DSM 16992] Length = 690 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 141/703 (20%), Positives = 253/703 (35%), Gaps = 94/703 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 2 ILKEDIEKVRATADLYDIVSATVSLKPSG----TGAYVGLCPFHDEKTPSFSVRPALGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L +K+ + L+ Sbjct: 58 HCFGCGLGGDVFGYVEHQENVDFRDAVELLADKYHIELHYDQSNAKKEHTGSKRARLLEA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF L LD R + F GYAP +L +L KGF++ Sbjct: 118 NEAAQEFFVSQLMTKDALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRYLAGKGFTQ 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++++AGL YD FR R+ +PIR S G+ + FG R L + +S+ KY+N+P+ Sbjct: 178 QEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRALGFGARKLYEDDSIGAKYINTPD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + K +++VEGY DV+++ AGV +++ Sbjct: 236 TALYRKNQVLYGIDMAKAAIVKK----------RQVVIVEGYTDVMAMHLAGVDTAIATC 285 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLIGPLKVDGQQLSSRIVFTFDGDAAGQKAAIHAFG 345 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L + + DP G A LI + PL D + K Sbjct: 346 LDAAFST---QAFVAVADDNLDPCDLRIKRGNEAVRALIANAEPLYDFVIKTAIGRFDTT 402 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L YS+ ++ E R Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRQIGVDLDIMQREVRDARRKLNVRDED 462 Query: 450 ----WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAALL 488 ++ A + P + K R E + Sbjct: 463 AYAPKRRFAANAAAAEPRMEQGVNPYANPSARKALEHRDAAEQSYYRIDDAVFICEQQFM 522 Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 TLI P + + L + + L+ + + P+ + + G Sbjct: 523 ATLIQVPLAVDPTLFASLTLSSFMTPVFRTLFQAIAAAGGLPSTDTPQGLWMHNLTKAGG 582 Query: 548 ELLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFRL 590 +L+ + ++ L ++A+ D + Y L + Sbjct: 583 PMLESVINELAVMQLPLPPSDADTERASQQSQEINVQLRKPTDDERRYASELIIRLLDTG 642 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + R+ ++++AQ+ + + L+ + ++ +++ Sbjct: 643 IMRRIGADKRRMAQLP---DGAEKIELLGQITKLETLRKDLQA 682 >gi|313896934|ref|ZP_07830481.1| DNA primase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974381|gb|EFR39849.1| DNA primase [Selenomonas sp. oral taxon 137 str. F0430] Length = 594 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 267/636 (41%), Gaps = 47/636 (7%) Query: 1 MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P F++ + I ++ YV R+ G YW CCPFH EKTPSF + Sbjct: 1 MKDPRMEAFVQQVRAATDILAVVQSYVPLRRKG-----GRYWGCCPFHSEKTPSFSVVPA 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116 +GF+YCF CH GD F+S + + E+++R A G+P+P ++ +++ D Sbjct: 56 EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPVPERKRDAREEARLRALDD 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L R+ +A DFFH+ L YL RG+ IE + +G+AP + L + ++ Sbjct: 116 LRRVNALARDFFHNCLTMTRYGAPGKAYLAGRGMTEETIERWGIGFAPGAWSKLADAFQK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G E+ ++EAGL + S YDRFRNR++ PI RG+++ FGGR L + KYLN Sbjct: 176 RGIPEKLLLEAGLCSARERSGGIYDRFRNRVMIPIADERGRIVGFGGRVL-GDGTPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET +F+K K L+ A + + ++VEGYMD +++ +AGV NVV Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------HEGYAVVVEGYMDAIAVAEAGVANVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA TE LL + +PRIV C+D D G A +A+ V + +LL Sbjct: 285 ATLGTAFTEDHAALLLRRAPRIVFCYDSDAAGQEATLRALTAVRGRAA---ELRVLLLPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD +IR +G AF LI +LP+ + R R + + + + + Sbjct: 342 GKDPDEYIRTHGADAFRALIDAALPVPEYRL-RHIAARMAPGAEGQRAALREMLPVLAEL 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D R Y + L R+ + V+ + Sbjct: 401 -DDVTRPAYVRRTAAELFLDEGVIGDALR---RFRMHGGTEEPAPRAQSGAVPQRPVRRE 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 LL + L E + + + + Sbjct: 457 RGTAAERAGRELLAAVWRDVTTLAEIDAAVPLTEFPDAFFGDILRAAAEHTAAGGALD-A 515 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + + L + R + +Q AL + R L+ + Sbjct: 516 DFIAELPAAAGAAISRALVEEGRS---------------EESFQDALRTFHRMH-LTARL 559 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ ++ +G+ L + + ++ ++ + Sbjct: 560 ALHTRRAEEMMQEGKQAYIDEL-NEVKKIQDELSAL 594 >gi|325286905|ref|YP_004262695.1| DNA primase [Cellulophaga lytica DSM 7489] gi|324322359|gb|ADY29824.1| DNA primase [Cellulophaga lytica DSM 7489] Length = 657 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 153/661 (23%), Positives = 265/661 (40%), Gaps = 60/661 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V + TN + PF DE++PSF + K + Sbjct: 2 ISKSTIDQVYETARLEEVIGDFVQLKKSGTN-----FKGLSPFTDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KE+ + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEIEETERTDEQKEQANEKESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L + Y ERG I+ F LGY D S KG+ Sbjct: 117 SEYAQKYFSEVLWERELGKAIGLSYFKERGFTDETIKKFSLGYCLDQWDSFTNTALDKGY 176 Query: 179 SEEKIIEAGLLI---DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 E + + GL I +DRF+ R++FPI+S G+V+ FGGR L+ + KYL Sbjct: 177 KLEYLEKTGLTIVKKQEGQEVRKFDRFKGRVMFPIQSMSGRVLGFGGRILTNDKKAAKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPE+ ++HK K LY + A + K LVEGY DV+ Q G+ NV Sbjct: 237 NSPESDIYHKSKVLYGIYHAKQAIAK----------EDNCYLVEGYTDVIQFHQRGIHNV 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V Sbjct: 287 VASSGTALTPDQIRLVNRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVRVCTFP 343 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDSF + + + + + N P ++AE + N I+ Sbjct: 344 EGEDPDSFSKNNSLEEVHQYLESNSKDFIQFKASLLIKETANDPIKKAETVRDIVNSISK 403 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I D+ + Y Q + + G+ + + ++ + + V Sbjct: 404 IPDRIKKEIYIQECAQLMNISESVLFNTLAQIGKKEIADEVKKQKEEQKPFQVVKNKVVQ 463 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQEL----------------------------- 505 + + E ++ L+ + Q+ L Sbjct: 464 EKLDVQYVLEKKIIELLLLYGDTTQQFDDLLLKEDDKGDLILEKETVEARVFEKIYLDLQ 523 Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 +I N + + ++ L D E+++F + L + E+ L + + Sbjct: 524 EDEIELTNAKFRDIYYKLIEDLNEKEHFEANKFIGGLDQDLVSEISSILMEEEKYILHEW 583 Query: 565 ATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 E + Q + L R L+ ++ E++++ Q + +E +++ L Sbjct: 584 ERKEIYPKEKSVSIGQLVSETILTLRCYLIKKRIGELQEK-TQDPSLDNSEILQEIMNYL 642 Query: 622 H 622 + Sbjct: 643 N 643 >gi|209517799|ref|ZP_03266634.1| DNA primase [Burkholderia sp. H160] gi|209501745|gb|EEA01766.1| DNA primase [Burkholderia sp. H160] Length = 623 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 167/654 (25%), Positives = 280/654 (42%), Gaps = 57/654 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP------------KIEKK 110 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPHEPSPGYGGGASAGSYAPAAS 116 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY--- 167 + + T L L++ A D++ L+ A YL +RG+ F LGYAPD Sbjct: 117 KAVTTALSDLMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPDGWQNLE 174 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 AAFPDYRDDALVEAGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLDG 234 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 GEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVALA 283 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 284 QLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNRT 343 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + F+ L DPDS++R +G AF + + ++PL + + + P+ +A Sbjct: 344 IRFLFLPTEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALFD 403 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 K + + LR DRL F + R Sbjct: 404 AKPLLQALPANALRAQIMHMFADRLDVPFSEVAALCEVDARIA---------------AA 448 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 K + + E L L+ +P + +E + +L++ + + Sbjct: 449 AREAPARKDRRSVTGIEEKTLRNLVMYPRTVAMLDEEAEEALLTVTRHAELFAEVATHAR 508 Query: 528 EQKYFLPEEIHQRLCERG-----FGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQ 580 ++ L G F E+ +++ + L +A +++ R+ ++ Sbjct: 509 ALGDSAAFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPHDAAVIEERREQER 568 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +L + + ++ Q++ + T + E++ + ++ Q Sbjct: 569 IVGEELKAAILKMRYDAYCDRLDQLSRQSRH--TPEEFAEFTELNRKRADMKRQ 620 >gi|312889927|ref|ZP_07749471.1| DNA primase [Mucilaginibacter paludis DSM 18603] gi|311297459|gb|EFQ74584.1| DNA primase [Mucilaginibacter paludis DSM 18603] Length = 648 Score = 335 bits (859), Expect = 1e-89, Method: Composition-based stats. Identities = 154/656 (23%), Positives = 278/656 (42%), Gaps = 49/656 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ I +IG++V +R N Y PF +E+TPSF + +KG + Sbjct: 2 ITKPTIDRIMEATDIVEVIGEFVVLKKRGAN-----YIGLSPFANERTPSFTVSPAKGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 FS + G ++FL S+ E+++ LA G+ + P+ ++E + L+ + Sbjct: 57 KDFSSGIGGSAVTFLMEHEKISYPEALKWLAKKYGIEVEELNDKPENREEENHRESLLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A FF SL + Y ERG I+ F+LGY+PD + + G+ Sbjct: 117 TGYAAKFFQQSLWETDAGKSIALSYFKERGFRDEIIKKFELGYSPDQWEAFTSQALKDGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 ++ + E GL + DN T YDR+R R++FPI + G++IAFGGRTL ++ KY+NSP Sbjct: 177 QQQFLEETGLSVKRDNG-TLYDRYRGRVMFPIHNFTGRIIAFGGRTLKSDKNVPKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY A ++ LVEGY DV+S+ Q+G++NVV+S Sbjct: 236 ESEIYHKSNVLYGLNFAKKAIR----------EEDNCYLVEGYADVISVHQSGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ +L+ I + +DGD G++A+ + +D+ L G V V G Sbjct: 286 SGTSLTVEQIRLIGRLTKNITILYDGDPAGIKASLRGLDM---ILEEGLNVKVVSFPDGH 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS++R G T F+ + ++ + + N P +AE+ + I I D Sbjct: 343 DPDSYVRLLGSTGFKNYVNQNKKDFILYKTNILLKEAGNDPIRKAEVIREIVESIAKIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN----------ARHRDQKGPSQRLM 467 + + LQ + TE + + K A+ P L Sbjct: 403 SIKAAVFIRECSTLLQIEERSLNTELNKIRQAKHKKDYQQQHHQQQAKPDWADLPPDDLF 462 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQE------------QYQELADIRYDNNEL 515 ++ S+ +E ++ LI + + EL+D+ ++ Sbjct: 463 VDEKIERVSSETGETQEKEIVRLLIMYGNRIINWDGIANTYIGPFIIAELSDVEFETPLY 522 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 + + + + ++ + L Q + W + VD Sbjct: 523 KHFVAIYHQELEKGNLPEEVFYINHADKQITDIAINILMSQYVLSPNWYDMHKIATVDEE 582 Query: 576 QGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + + + + + + +I Q+ + + + + +V I Sbjct: 583 KDMKATILGAIFHLKKQKVGKILADIRNQLKTTQSADDEDILLSQFVHMKKVEKSI 638 >gi|254509364|ref|ZP_05121451.1| DNA primase [Vibrio parahaemolyticus 16] gi|219547706|gb|EED24744.1| DNA primase [Vibrio parahaemolyticus 16] Length = 389 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 147/399 (36%), Positives = 221/399 (55%), Gaps = 25/399 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIIDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--------DPKIEKKEKIQ 114 +CF C V G+ + FL F+E+++ LA+ G+ +P + + + Sbjct: 60 HCFGCGVHGNAIDFLMEYERLEFVEAIEELASFLGLDVPREQRQGGGFQSNQPQASTAQK 119 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L+ F+ LK + K YL +RG+ ++ F +GY D +R++ Sbjct: 120 RTLYDLMGSIAQFYRDQLKQSSSKIAIEYLKDRGLSGEIVQKFGIGYVADEWDLVRKNFG 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 Q+ ++E ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR + + KYL Sbjct: 180 QQQQTQEMLVSGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVI-GDGTPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKGK LY + + + S I++VEGYMDV++L Q GV Sbjct: 238 NSPETPIFHKGKELYGLYEVMQAHR----------EPSQILVVEGYMDVVALAQYGVDYS 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ T ++LL++ + +V C+DGD G AA++A++ L +L GN + F+ L Sbjct: 288 VASLGTSTTGDHIQLLFRQTNTVVCCYDGDRAGKEAAWRALENALQYLKTGNTLKFLFLP 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393 GEDPDS++R +GK AFE+ I ++ PL L+ E Sbjct: 348 DGEDPDSYVRKFGKQAFEQQIEQATPLSSYLFDNLIEIH 386 >gi|297243193|ref|ZP_06927130.1| DNA primase [Gardnerella vaginalis AMD] gi|296888842|gb|EFH27577.1| DNA primase [Gardnerella vaginalis AMD] Length = 691 Score = 335 bits (858), Expect = 2e-89, Method: Composition-based stats. Identities = 138/707 (19%), Positives = 248/707 (35%), Gaps = 97/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G + CPFHDEKTPSF S G + Sbjct: 5 IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119 +CF C GD ++ F E+V+ LA + + + + + + L+ Sbjct: 61 HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNSDSQSRGSKRARLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF +L L R F GYAP +L +L KGF+ Sbjct: 121 ANEEAQKFFVSNLGTQEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++++AGL G YD FR RL +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 181 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T L+ K + LY A + K +++VEGY DV++ AG+ V++ Sbjct: 239 DTALYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 288 Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335 GTA +++ + +S RIV FDGD G +AA A Sbjct: 289 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 348 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L L + + DP G A L+ + PL D + Sbjct: 349 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 405 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---- 451 + + + I I+D+ L Y + + E R K Sbjct: 406 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 465 Query: 452 --------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +NA + + + + ++ + E + L Sbjct: 466 DAYAQKHNVIPTFGQQINDDRNAGFKASRMEIIKSSAKNQHYYRVDDAVFMCEQQFMALL 525 Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + P E + +L + + L+ + + + + + + G LL Sbjct: 526 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 585 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---------------------ALYKRFR 589 + + ++ L + + D Q + L R Sbjct: 586 ESVITELSVMPLPLPSPADTLEDTGNRQNQQVSNGSPSDLLRKATSAESKYANELLIRLL 645 Query: 590 LL--SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + R+ ++A++ + ++ L+ + + ++SQ Sbjct: 646 DIGYMRRIGAARVRMAKLK---DGQEKLELLGKITSMEAARKNLQSQ 689 >gi|291531111|emb|CBK96696.1| DNA primase, catalytic core [Eubacterium siraeum 70/3] Length = 586 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 140/556 (25%), Positives = 240/556 (43%), Gaps = 25/556 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M DF+ ++ I ++I YV + T DY CPFH EKTPS H + Sbjct: 1 MRLSEDFLLNIKESNDIYDVISSYVPLKKSGT-----DYVCNCPFHSEKTPSCHIYMATQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD ++F+ ++ESV+ LA AG+ +P + K +T + Sbjct: 56 SFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAYEM 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + K YL RG+ H I + LGYAPD+ SL++H+ G+S+ Sbjct: 114 NREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++ EA LL S +D F+ R++FP RG ++ F GR + ++ KYLN+ T Sbjct: 174 SEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGEDNRKYLNTKATA 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +++K LY+ A N S +I+ EG +DV+S+ QAG +N V++ GT Sbjct: 234 VYNKSTFLYSLNHAKNA------------GESVLIMCEGNLDVISMYQAGFKNAVATCGT 281 Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 A+T+ R + +++L +D D G +A +A+++ G N + + +DP Sbjct: 282 AITDSHARNIANLGFKKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +I+ +GK AF+ LI S +D K+ + P ++E + I +I Sbjct: 339 DEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVSFIANINSPI 398 Query: 420 LRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y I + + R + +R + Sbjct: 399 DRAVYISTIAQECDVNRANVDIAVNQIISKRNKTREKDNRRAILNGSVNRDKINPEASRY 458 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E ++ L + P L++ +++ + ++L+ L + + Sbjct: 459 PAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVSML 518 Query: 538 HQRLCERGFGELLKQL 553 R + K + Sbjct: 519 ADRYSAEEVASIYKLI 534 >gi|306829362|ref|ZP_07462552.1| DNA primase [Streptococcus mitis ATCC 6249] gi|304428448|gb|EFM31538.1| DNA primase [Streptococcus mitis ATCC 6249] Length = 591 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 143/629 (22%), Positives = 263/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + ++ L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPIQSRPQQLSPHQALYDMHEE 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K F E+ Sbjct: 123 AARFYHAILMTTKMGEAARAYLYKRGLTDDVLKHFQIGLAPVERNYLYQRLSGK-FEEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + +D F R++FP+ + +GQVIAF GR + + KY NS T Sbjct: 182 LLDSGLFYLS-DDNQFFDTFFGRIVFPLTNDKGQVIAFSGRIWQETDGQTAKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 346 EYLQKNSPEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++ R + SL + Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKE----HPRPVAISLPVTRQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L + Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELL-------------SVEGE 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E + ++ + + + LLS+ I+K Sbjct: 508 IRSEELSHQTPEVENAWYHVLGLDLPAEMSPQELME-----VEATRNRALLSKDNLRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHLGDTDTALEELQRLISQKRRME 591 >gi|71899300|ref|ZP_00681461.1| DNA primase [Xylella fastidiosa Ann-1] gi|71730926|gb|EAO32996.1| DNA primase [Xylella fastidiosa Ann-1] Length = 577 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 164/609 (26%), Positives = 276/609 (45%), Gaps = 47/609 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G + R+ +Y + CPFHDE++ SF+ + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G +SFL F+++V LA AG+ +P + + L + Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEVPRETQQKHAHQDDSRPLYAAL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A+ FF L+N ++ YL+ERG+D + F++GYAPD L++ L Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AG+L D YD+FR+R++FPI RG+VIAFGGR L K +S KYLNSPET L Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK + LY + Q R +I+VEGYMDV+SL Q G+ V++LGTA Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL++ +P + CFDGD+ G +A ++A++ +L + G + F+ L GEDPD+ Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R GK AF + + +++PL + + + + +T D +A L + + I + Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + P +S +L+ + Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLTAQKR 441 Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++ P++ LA + L ++ + + Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500 Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ER LL+ L Q W+ + + +++ Q + L++ ++ Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560 Query: 598 IEK-QIAQV 605 I+K ++ ++ Sbjct: 561 IDKYELREL 569 >gi|300868030|ref|ZP_07112668.1| DNA primase [Oscillatoria sp. PCC 6506] gi|300333950|emb|CBN57846.1| DNA primase [Oscillatoria sp. PCC 6506] Length = 674 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 167/680 (24%), Positives = 287/680 (42%), Gaps = 69/680 (10%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I+++ I ++I +V +R D+ CPFHDEK+PSF + Sbjct: 1 MQIPRLHPDTIEEVKQRADIVDVISTHVVLRKRGK-----DFVGLCPFHDEKSPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 SK +YCF C G+ FL L SF + V LA VP+ P +++++ + Sbjct: 56 SKQMFYCFGCGAGGNAFKFLMELGKRSFSDVVLELARQHQVPVQTLEPEQRQELQRQISL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ +A+ F+ H+L+ ++ ++ Y ER + I+ F+LGYAP +L + Sbjct: 116 REQLYEILALASSFYEHALRQSQGQKALEYLQVERKLSEETIQQFQLGYAPSGWEALYSY 175 Query: 173 -LRQKGFSEEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + QK + + + +AGL+I YDRFR+RL+ PI +G+VI FGGRTL E Sbjct: 176 LVEQKHYPLQLVEQAGLIIPRKSGGNGYYDRFRDRLMIPICDLQGRVIGFGGRTL-TDEQ 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KGK LY A + K R ++VEGY D ++L AG Sbjct: 235 PKYLNSPETELFDKGKTLYALDKAKTAISKQDRA----------VVVEGYFDAIALHAAG 284 Query: 291 VQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNR 347 + N V+SLGTAL+ Q+R L + + +IVL FD D G +AA +AI ++ + Sbjct: 285 IANAVASLGTALSLDQVRQLLRYTESKQIVLNFDADKAGTQAAERAIGEIEKLACRGEVQ 344 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + + + G+D D +++ Y + +L++ + +D + N D+ ++ Sbjct: 345 LRILNIPDGKDADEYLKSYSADKYSELLLNAPLWLDWQIQNLLLNCDLKQADQYGKVTQE 404 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQ------------------------LFQKYITEH 443 + + I D +Y+ L + L Q Sbjct: 405 MVKLLTKITDDNQLAHYNYECAQILSKGDSTRVKFLAETLLNQVVSYWAKLLNQDESLAL 464 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 R K +R + S +L + + EA LL I+ P Q Sbjct: 465 PPLIRNKLKGSRQVRSRRAGSENKSSIEALSQARERSVLEQPEAFLLRIYIHSPEHRQAV 524 Query: 502 YQELA--DIRYDNNELQKLWSFLFSDFVEQK---YFLPEEIHQRLCERGFG-----ELLK 551 + + D+++ + + LW L + + K + +L + + Sbjct: 525 IEAIEARDLQFSLSHHRFLWLQLLNLKMLDKTSLQADASVLISKLQNNYLEFPTQLQQIS 584 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-RQKEEIEKQIAQVTAKGE 610 L + I +Q +R L+ +K + Q + A Sbjct: 585 HLFHLDELSEKHILRPPLAIRAAIAYIEQITTQKRRVAALNMWEKTDAIAQ--REQADRY 642 Query: 611 AEKTAILISILHEVHIQIHQ 630 ++ + + E+ ++ + Sbjct: 643 YQQFWVEQEWIKELE-RLRR 661 >gi|332878802|ref|ZP_08446517.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683153|gb|EGJ56035.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 655 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 162/667 (24%), Positives = 274/667 (41%), Gaps = 60/667 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + + +IG +V R +N Y PF +E+TPSF + K + Sbjct: 2 ITKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + P E+KEK + L + Sbjct: 57 KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIEIEESQPSTEEKEKADERESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF SL N + Y ERG I+ F LG++PD + + KG+ Sbjct: 117 SEYAQQFFQDSLLNTEAGKAIGLSYFKERGFTDDTIKKFCLGFSPDEWTAFTDAALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 + + GL I N +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 QLPYLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ L Q G++NVV+S Sbjct: 235 ESDIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQLHQKGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+P I + +DGD GLRA+ + IDL L G V GE Sbjct: 285 SGTALTPDQIRLIHRLTPNITVLYDGDAAGLRASIRGIDL---ILEQGMNVKVCTFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + + P ++AE + N I I D Sbjct: 342 DPDSFARKTAYEDLVIYLQDHATDFIRFKASLLMQEAQDDPIKKAETIRDMINSIAKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS-LVKGKL 476 R Y + + + + S + + ++K P+ ++ ++ V+ + Sbjct: 402 AIKREVYVRECAVIMDISEEVLFSTLSQMLKKDLYEGQKVERKQPTMQVSRTPEAVEQRG 461 Query: 477 SKKPSLREAALLLTLINH----------------------------PAILQEQYQEL--A 506 K E L+ TL+ + + ++ + EL Sbjct: 462 INKLETLEHDLIKTLLLYANRECEFIDTILEQDEEGNLKEKQVQQTLKVYEKIFLELQED 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 +I N + ++++ L E + + I L ++ + Sbjct: 522 EIELANPDFKQIYQLLMQKLNEDPEYNIDRIANELPVELSEKVSDLIMEDENRHLDDWER 581 Query: 567 TEANIVDVRQ---GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + D + L R L+ +EI+ Q A + + + + + Sbjct: 582 RDIIAKDKDAHINAMVSDIILNIRTLLVRHLIQEIQAQFASAEEEEKR-ELLETVKSYLQ 640 Query: 624 VHIQIHQ 630 + + + Sbjct: 641 LQKLLAK 647 >gi|261367094|ref|ZP_05979977.1| DNA primase [Subdoligranulum variabile DSM 15176] gi|282571218|gb|EFB76753.1| DNA primase [Subdoligranulum variabile DSM 15176] Length = 596 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 151/556 (27%), Positives = 256/556 (46%), Gaps = 34/556 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+++I++++ I +IGQYV RR CPFH+EKTPSF + Sbjct: 2 IPQEYIQEVVRRNDIEEVIGQYVQLRRRGRTLS-----GLCPFHNEKTPSFVVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD ++F+ ++ESV++LA+ AG+PLP + K + + L+ + Sbjct: 57 YCFGCGAAGDVINFVRKYNNLGYVESVKQLASRAGMPLPEEEDKEARA---RQRLLEINR 113 Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A +F+ L + Y+ ++RG+ AI F LGYAP+ L +LR++GF Sbjct: 114 CAARYFYEQLNAKTPEAALARRYWKEKRGLSDAAIRRFGLGYAPEDFSGLLHYLRRRGFR 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+++ +GL I YD FR+R++ PI RG +IAFGGR L KY+NSPET Sbjct: 174 EDELEHSGL-IKRSAKGNLYDIFRHRVMVPIIDVRGSIIAFGGRVL-DDSKPKYINSPET 231 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +++HK + L+ A K IL EGYMDV+S+ +AG V + G Sbjct: 232 VVYHKSRTLFALNIAKKSASKRY------------ILCEGYMDVISMHEAGFDTAVCACG 279 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q++LL + + +VL +D D+ G +A +++ L +V+ + +DP Sbjct: 280 TALTPEQVKLLSEYADEVVLSYDSDEAGQKATERSLGLFANSP---VKVSVLSYQGAKDP 336 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQ 418 D FI+ YG+ F+ L+ + + K+ + D R + + Sbjct: 337 DEFIKKYGRERFDMLLNGTANPTEFQLKKAKAKYDLRSDDGRLNYIREAIDILTGHGVTP 396 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD-----QKGPSQRLMQSSLVK 473 R Y+ + + Q +++ G R + + ++ QKG + + Sbjct: 397 TARDVYAGRLAEETGVAKQAILSQMQGALRAADRRSHRKEQKEMVQKGIAADIRVPYTQG 456 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G + + L+ L+ P + L E+Q+ +F E++ Sbjct: 457 GDAALGAASASRQLVAALLQDPDEVPYVRARLNMDTILLPEMQQALQAIFRCAEEKQPVN 516 Query: 534 PEEIHQRLCERGFGEL 549 + QRL ++ F ++ Sbjct: 517 LTSLQQRLDDKAFQQV 532 >gi|189502290|ref|YP_001958007.1| hypothetical protein Aasi_0912 [Candidatus Amoebophilus asiaticus 5a2] gi|189497731|gb|ACE06278.1| hypothetical protein Aasi_0912 [Candidatus Amoebophilus asiaticus 5a2] Length = 640 Score = 334 bits (857), Expect = 2e-89, Method: Composition-based stats. Identities = 179/651 (27%), Positives = 292/651 (44%), Gaps = 43/651 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + I ++G +V +R N WACCPFH E+TPSF + SKGFY Sbjct: 2 LNQETIQAVQQAALIEEVVGDFVTLKKRGQNL-----WACCPFHHERTPSFSVSPSKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 CF C GD ++F+ A+ G SFIE+V+ LA +P+ + K + + L L Sbjct: 57 KCFGCDAAGDSIAFIKAIEGISFIEAVKYLATKYSIPIQETEEGHKDIAAQHERDSLYIL 116 Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +++A +++ +L + + H YL ERGI I+ F+LGY+ DS E+ ++G+ Sbjct: 117 MKLANNYYIQNLWEHSEGQRIGHAYLKERGITDDFIKQFELGYSLDSWQGFHEYALKQGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 ++ + +AGL++ N YDRFR R+IFPI + G+VIAF R L KY+NSP Sbjct: 177 TDGLLEKAGLIV--HNQEKLYDRFRGRVIFPIHNLSGKVIAFAARILKPADNQPKYVNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++HK LY + A ++ LVEGY DV+SL AG++NVV+S Sbjct: 235 ETPIYHKSDVLYGIYQAKQKIK----------QVDKCFLVEGYTDVISLHMAGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q++L+ + + I + FDGD G++AA + +D L G V +LL GE Sbjct: 285 SGTALTDSQIQLVSRFTKHITVLFDGDTAGIKAALRGVD---KILEKGLHVKVILLPPGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+ + AF+ + E + + P ++AE + I I D Sbjct: 342 DPDSYSKKLDSLAFQTYLQEHEQDFITFKAKLLMEGIGDDPTQKAEAIKEILQSIALIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ------RLMQSSL 471 R + Q L + EH+ +K + + + L Sbjct: 402 AVNRTLFLQQCSRLLDINEGVLLGEHNKILVRKEKEHHRPHKLVHNPVNELQLTAKRGEL 461 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLWSFLF 523 + + E + L+N+ +I+ E QELAD+ + + + + S Sbjct: 462 IPLNWAATIEAYEQESIRLLLNYGSIILEDGNPLSTYLLQELADVPFQHPVYKHILSTYE 521 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ--- 580 ++++ Q ER + + W + NI + Sbjct: 522 ELALQEQVIDINFFVQHTDERIQKTAIDLTASPYEVSDKWQEKYQINISKEEDNLYRNAY 581 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILISILHEVHIQIHQ 630 L + RL+ + EE K + + E +K + + L + I Q Sbjct: 582 KNILRLKLRLIHQLIEENNKLLKNTVHEPEEEDKLLQVYATLKQSETAIAQ 632 >gi|325299910|ref|YP_004259827.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|324319463|gb|ADY37354.1| DNA primase [Bacteroides salanitronis DSM 18170] Length = 698 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 162/699 (23%), Positives = 288/699 (41%), Gaps = 96/699 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ I +++ ++V +R N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRIMDAAQIVDVVSEFVTLRKRGVN-----YIGLCPFHNEKTPSFSVSPSKGVC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + L + Sbjct: 57 KCFSCGKGGNVVHFIMEHEQLSYYEALKWLAKKYNIEIKERELTDEEKQAHSLRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A+++F + L N D + YL RG I+ F+LGY+ D+ +L QKG+ Sbjct: 117 NQFASEYFQNILYNNIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDNHDALARAALQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 EE +++ GL ++ T DRF R+IFP+ + G+V+AFGGR L +K +KY+N Sbjct: 177 KEEFLVKTGLCYRKEDG-TLRDRFWGRVIFPVHTISGKVVAFGGRVLSAATKNVQMKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK + LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G V LL Sbjct: 286 ASSGTALTSEQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNVKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ I + + P +RA L + I+ I Sbjct: 343 GDDPDSFARKHNATDYQAYINDHEVDFIRFKTDLLMEEAGKDPIKRASLISSIVKSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQ-------QLFQKYITEHSGYGRYWKKNARHRDQ--------- 459 D +R Y + LQ + K I + ++ + R+Q Sbjct: 403 PDAIVRSVYIRECSQLLQMEEKVLIEATAKLIEQAREAKFKEQQRKKEREQRLTATPQAS 462 Query: 460 --------------------------------KGPSQRLMQSSLVKGKLSKKPSLREAAL 487 P++ +G K +E L Sbjct: 463 VPESSPEAQTNETPAADSTSETGNAPFPSEPAPFPTEPYTSYIPSEGNEQKVFYAKEEDL 522 Query: 488 LLTLINHPAIL-----QEQYQEL--------------ADIRYDNNELQKLWSFLFSDFVE 528 + LI + + E +++ ++++ + + + + Sbjct: 523 VRMLIRYGEKVMCYVENETGEQIPFTVTECIASGLKEDELQFYDPLHRLVLQE-CEAHLN 581 Query: 529 QKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 F PE + +L L DR + + L L Sbjct: 582 DPNFNPERYFIAHPDPAVSKLAVDLVSDRYQLSKYHSKGQKIVSDEERLYELVPRLLLDF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + ++ + + + +A + ++ ++ E+ Sbjct: 642 KLSIVEEEMKHTIQALANPEIANDPQRCLEIMKRYKELQ 680 >gi|282900147|ref|ZP_06308104.1| DNA primase [Cylindrospermopsis raciborskii CS-505] gi|281195029|gb|EFA69969.1| DNA primase [Cylindrospermopsis raciborskii CS-505] Length = 638 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 157/654 (24%), Positives = 273/654 (41%), Gaps = 46/654 (7%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D ++++ I ++I YV RR D+ CPFH+EKTPSF + Sbjct: 1 MQIPRLHPDTVEEVKHRADIVDVISDYVVLRRRGK-----DFVGLCPFHEEKTPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K YYCF C G+ + F+ L F E V LA VP+ P +++++ + Sbjct: 56 TKQIYYCFGCQASGNAIKFMMDLNKRQFAEVVLDLAKRYQVPVKTLAPEQRQELQRQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172 + L ++ + F+ H L+ ++ YL ++ + +E F LGYAP +L + Sbjct: 116 REQLFEVLASTSQFYQHVLRQDIGQQALQYLQKKRFLKTETVEKFALGYAPPGWETLYHY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + + +AGL+ YD FRNRL+ PIR +G+VIAFGGRTL E Sbjct: 176 LVENKNYPPQLVEKAGLIKPRKEGGGYYDVFRNRLMIPIRDVQGRVIAFGGRTL-TDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF K K L+ + + + K ++VEGY D ++L G+ Sbjct: 235 KYLNSPETELFDKSKTLFALDVSKDAISKL----------DQAVVVEGYFDAIALHANGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 NVV+SLGTAL+ Q+RLL + S ++VL FDGD G+ A +AI ++ ++ Sbjct: 285 NNVVASLGTALSLEQVRLLLRYSESKQLVLNFDGDKAGINATERAIGEISNLAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + G+D D +++ + T + +L+V++ +D + + R P + + Sbjct: 345 KILHIPDGKDADEYLKNHSVTDYGQLLVDAPLWLDWQIAQVIQGRDLRQPTDFQLVSREF 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I + YY + L + I R + P Sbjct: 405 VKLLQKILNSDTLNYYISHCAEILSLGDTRLIPLRVENLITQVAPRRTPTPRPPQPDSTT 464 Query: 469 SSLVKGKLSKKPSLREAA---LLLTLINHPAILQEQYQEL--ADIRYDNNELQKLWSFLF 523 S +PSL E A LL ++ P Q + L +++ + + + LW Sbjct: 465 SPNTHQISHPQPSLLEQAEGLLLRIFLHCPQERQVIIETLGSSNLEFSVSHHRFLWEKSL 524 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQ 580 ++ +L + E N ++ Q Sbjct: 525 QF-----PSQTLDLISQLQNLYLET-----QNDLGPVQHIFQLNEKNKQEILLRTSQLVQ 574 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A + + + + ++ ++ ++ ++I ++ Q Sbjct: 575 AAIACMEKVFRENRYRHFLELWQKTDPSTDPDQYSLYTQTIYADKMRIQELSKQ 628 >gi|325267619|ref|ZP_08134271.1| DNA primase [Kingella denitrificans ATCC 33394] gi|324980969|gb|EGC16629.1| DNA primase [Kingella denitrificans ATCC 33394] Length = 585 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 175/617 (28%), Positives = 277/617 (44%), Gaps = 54/617 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+DF+ DLL I ++I QYV + N Y ACCPFH EKTPSF + SK FY Sbjct: 2 IPQDFVDDLLAKTDIVDVIDQYVPLKKGGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-------KKEKIQT 115 +CF C G + F+ G F+E+VQ LA G+ +P V + K++ Q Sbjct: 57 HCFGCGAHGSAIGFVMEHQGLGFVEAVQLLADRVGMSVPNVREENPQAAAQRAAKKQQQQ 116 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L ++++ A F+ L R + Y+ RG+ I + +GYAP+ L + + Sbjct: 117 TLEQVVQAACTFYEQQL--PRSPQAWQYVTGRGLSPEIIAHYGIGYAPEGWSPLAQVFQ- 173 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + DN YDRFR+R++FPIR+ GQVI FGGR L KYLN Sbjct: 174 ---PYPSAALIDSGMVLDNEGRQYDRFRHRIMFPIRNISGQVIGFGGRVL-DDSKPKYLN 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGKNLY A ++ + R I++VEGYMDV++L Q GV V Sbjct: 230 SPDTPLFDKGKNLYGLHEARQAVKDAGR----------ILVVEGYMDVVALAQFGVGYAV 279 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGT+ T ++LL++ + + CFDGD G +AA++A++ L L ++F+ L Sbjct: 280 AALGTSTTAEHIKLLFRQTDHVYFCFDGDAAGRKAAWRALENALPQLKDDKTLSFLFLPP 339 Query: 356 GEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSFIR YG+ FE+ L+ ES PL W+ T NT + +AEL H + Sbjct: 340 EHDPDSFIRQYGRQRFEEALLHESKPLSHYFWETLTAGTEPNTQEAKAELVKHAAPLLRQ 399 Query: 415 I-KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + L Y Q + ++ A+ S R + + Sbjct: 400 ITQAPTLSYLLRQELSEKTGIDPNNLAQLMGQAAPQRHVAAKSYQLPRESYRQPAPATLL 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + ++ P L + ELA + +L KL+ Q+ Sbjct: 460 QQQLRTLLFNAEW--AEYVSFPDYL-DISDELACLL----DLAKLYR--------QRPIT 504 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--------LALY 585 + + + +L + +A + + + + G ++ + Sbjct: 505 AAQALEHFRQSPHFAILDSVFAHAAEADSINDNGAEKLQEFQDGMRKIVQKAQTEHINRL 564 Query: 586 KRFRLLSRQKEEIEKQI 602 ++ LS ++++ + Sbjct: 565 RQKPQLSPDEKKLLISL 581 >gi|312130780|ref|YP_003998120.1| DNA primase [Leadbetterella byssophila DSM 17132] gi|311907326|gb|ADQ17767.1| DNA primase [Leadbetterella byssophila DSM 17132] Length = 627 Score = 334 bits (856), Expect = 3e-89, Method: Composition-based stats. Identities = 173/642 (26%), Positives = 289/642 (45%), Gaps = 37/642 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D + +L I ++G++V RR N ACCPFH+EKTPSF + +KG Y Sbjct: 2 IPQDTVNQILQAADIGEVVGEFVTLKRRGANL-----IACCPFHNEKTPSFSVSPAKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120 CF C GD + F+ L G S+ ++++ LA + + + + + + L + Sbjct: 57 KCFGCGKGGDSVRFVMDLEGLSYPDALKWLAKKYNIEIKEKEFTDSELAAQNERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +FF L N+ + + Y ERG +E F LG+APD R + Q GF Sbjct: 117 SEFANNFFRDYLLNSSEGQSVGASYFIERGFSKPVMERFHLGFAPDGRDLFYKTATQAGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSP 237 S+E + +AGL+ + T DRFR R++FPI + G+ IAFG R L ++ KY+NSP Sbjct: 177 SQEVLEKAGLVSKK-DDNTYLDRFRGRVVFPIHNVAGKTIAFGARILKTDAKAPKYINSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++HK K +Y + A N +++ LVEGY DV+SL QAG++NVV+S Sbjct: 236 ETEIYHKSKIVYGIYQAKNAIRQK----------ENCFLVEGYTDVISLHQAGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + I + +DGD G++A+ + IDL L G V V+ G+ Sbjct: 286 SGTSLTVEQIRLIGRFTDNITVLYDGDSAGIKASLRGIDL---ILEEGLNVKAVVFPEGD 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+IR G AF + + ++ + ++AEL L I + + Sbjct: 343 DPDSYIRKVGGEAFTRYVEQNQKDFIRFKTEISLEDVGQDAVKKAELVESLVLSITKVPN 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + Q + L I E + N + ++ Q + ++ LS Sbjct: 403 PVKRQIFYQEVAKLLNIDEAILINE---GNKKTVTNLKPVAKQDGGQVAPKRNIEMEILS 459 Query: 478 KKPSLREAALLLTLINHPA--------ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ E AL+ L+ + + + E + L ++ + + Sbjct: 460 QEDHPEEEALVRDLVLYGQVQISEAHVLADYIFSETEADIVQDPVLNAIYRQYYEFYSRG 519 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + E + Q + + E I + + + + Sbjct: 520 EAPTTRYFISH-PDHRIQEKVIQWETPKHELSQHWKKYEIFIPEYQDNLGENITRINFRI 578 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L + K+EI + I ++ + EK IL+ L E + +I Sbjct: 579 ALLKIKKEINQVIEELNFV-DEEKEVILLEHLKEKLAERKEI 619 >gi|298207900|ref|YP_003716079.1| putative DNA primase [Croceibacter atlanticus HTCC2559] gi|83850541|gb|EAP88409.1| putative DNA primase [Croceibacter atlanticus HTCC2559] Length = 657 Score = 334 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 152/670 (22%), Positives = 269/670 (40%), Gaps = 62/670 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + +IG +V + +N + PF DE++PSF + K + Sbjct: 2 ISQNTIAQVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G ++FL S+ E+++ LA G+ + + E+KE+ + + Sbjct: 57 KDFSSGKGGSVVTFLMEHEHFSYPEAIKYLANKYGIEVEETERTDEEKEQASEKESMYLA 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+F++ L + + Y ERG I F+LGY+PDS + +KG+ Sbjct: 117 NEFAKDYFNNMLTKTDEGKAIGLSYFKERGFSEDTINTFQLGYSPDSWEAFTTEAIKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 E + + GL I +DRF+ R++FPIRS G+V+ FGGR L KYLNS Sbjct: 177 QLEFLEKTGLTIV--KEEKQFDRFKGRVMFPIRSMSGRVLGFGGRILDNNNKKAAKYLNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P++ ++ K K LY + A + K LVEGY DV+ Q+G++NVVS Sbjct: 235 PQSEVYDKSKVLYGIYNAKQTIAK----------EDNCYLVEGYTDVIQFNQSGIKNVVS 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALT Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V G Sbjct: 285 SSGTALTPEQIRLINRLTKNITVLFDGDAAGMRASIRGIDL---ILEQGMNVKVCTFPDG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF + + + E+ S N P ++A L + I+ I Sbjct: 342 EDPDSFAKNNTEEDLLLYLEENAKDFINFKASLLIEDSKNDPVKKAGLIRDMVTSISKIP 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVK 473 + R Y + + + + + K+ ++Q S +++ + Sbjct: 402 EPIQREIYIKETSRIMDISEEVLFSSLAQLSAKETKDNSKKNQGKSYKQSFEVVKEPEQQ 461 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL---------------------------- 505 + + E ++ L+ + + + + Sbjct: 462 KVVINRLYELERTIISLLLLYGTLEDDFEELYLTEDDDGHPKLEADTQKLKVFEKIYLDL 521 Query: 506 --ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 +I + N+ Q L++ + S + + + E+ L + Sbjct: 522 QEDEIAFANSNFQTLYNLIISKLNLESELKIDAFINEIDPEQAKEVTSILMDDEQHVLHD 581 Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 E + D ++ Q + L R L+ Q E+ + ++ + + Sbjct: 582 WERKEIFVRDKKESIAQLVSETILSLRQHLVKLQISELMSSLKNADSEQDNSEILQDTMD 641 Query: 621 LHEVHIQIHQ 630 + + + Q Sbjct: 642 YKGLELLLSQ 651 >gi|332521659|ref|ZP_08398112.1| DNA primase [Lacinutrix algicola 5H-3-7-4] gi|332042748|gb|EGI78948.1| DNA primase [Lacinutrix algicola 5H-3-7-4] Length = 652 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 149/631 (23%), Positives = 250/631 (39%), Gaps = 58/631 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V + + + PF DE++PSF + K + Sbjct: 2 ISKSTIDQVYETARLEEVIGDFVQLKKSGS-----SFKGLSPFSDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KE + L + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEIEETEQSNEQKEAQNKRESLYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++F L + Y ERG I+ F LGY+PD + +H +KG+ Sbjct: 117 SEFANNYFQDILHKTNQGKAIGLSYFKERGFTEETIKNFNLGYSPDEWSAFTDHAIKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 E + E GL ID +DRF+ R++FPI+S G+V+ FGGR L+ + KYLNSP Sbjct: 177 KLEFLAETGLTID--KGDKQFDRFKGRVMFPIQSMSGRVLGFGGRILTSDKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ L Q GV NVVSS Sbjct: 235 ESDIYHKSKVLYGIYHAKQSIAK----------EDNCYLVEGYTDVIQLHQTGVTNVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V GE Sbjct: 285 SGTALTSEQIRLINRLTKNITVLFDGDAAGMRASLRGIDL---ILEQGMNVRVCTFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + + E+ S N P ++A+ + N I I D Sbjct: 342 DPDSFAKTNTLDELKHYLNENAKDFIQFKASVLYEDSKNDPIKKADTIRDIMNSIAKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + Y Q + + + + + +NA + P + K Sbjct: 402 RIKKEVYIQECARIMDISEEVLFSTLAQIDKKDNQNATKQAPSAPKAFDVIKHQQPVKKV 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL------------------------------AD 507 + E ++ L+ + ++ + + Sbjct: 462 DVQYVLERKIIEVLLLYGNRTEDFEDLVLKENEEGELVLEPVVQQSKVFEKVFLDLQEDE 521 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + + N + + L+ + + E + + ++ L R Sbjct: 522 MEFSNPQFKDLYYRIIETLNQNPDVATEHMINTVDAEIGNQITTILMEDERYELSDWERN 581 Query: 568 EANIVDVRQGYQQAL---ALYKRFRLLSRQK 595 Q + L R L+ ++ Sbjct: 582 NIFPKHKTDSVSQLVSETILSLRCHLIDQKV 612 >gi|254495064|ref|ZP_05107988.1| DNA primase [Polaribacter sp. MED152] gi|85819414|gb|EAQ40571.1| DNA primase [Polaribacter sp. MED152] Length = 670 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 152/687 (22%), Positives = 271/687 (39%), Gaps = 79/687 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I + + +IG++V + +N + PF DEK+PSF + K + Sbjct: 2 ISRSTIDRVFESARVEEVIGEFVQLKKAGSN-----FKGLSPFTDEKSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ +SFL S+ E+++ LA + + + E+K + + + + Sbjct: 57 KDFSTGKGGNAISFLMEHEHYSYPEAIKWLAKKYNIEIEETEQTDEQKAQMNERESMFLV 116 Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+FH L + K + Y ERG I+ F LGY D + KG+ Sbjct: 117 SKFAKDYFHDLMLNTNQGKAIGLSYFKERGFTDETIKKFDLGYCLDEWDNFTNAALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + GL I +DRF+ R++FPI S G+++ FGGR L + KYLNSP Sbjct: 177 DLKYLASTGLTIV--KENKQFDRFKGRVMFPIHSMSGRILGFGGRILKADKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+S Q+ V+NVV+S Sbjct: 235 ESDIYHKSKILYGIYQAKKEIAKQ----------DNCYLVEGYTDVISFNQSNVENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V V GE Sbjct: 285 SGTALTSDQIRLVNRLTKNITVLFDGDAAGIRASIRGIDL---ILEQGMNVKVVQFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + + + + +S S N P ++A + + I+ I D Sbjct: 342 DPDSFAKAHTNSELKAYLEDSAQDFINFKVSLLLKDSNNDPVKKAGVIRDIVTSISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--- 474 R Y Q ++ + +E + + N + + S + Sbjct: 402 SIQREVYIQECSRIMEISERVLFSELAQLLKKEVTNKARKSKPQASSNQDPNQPPPEYFA 461 Query: 475 -----------------KLSKKPSLREAALLLTLINHPAILQEQYQEL------------ 505 K + S+ E ++ L+ + + +E+ Sbjct: 462 ELEQAQMGVVKGGAVAFKKVDELSILEREIIRILLLYGNEQVDFIEEIINVDEDGKETIT 521 Query: 506 ------------------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 +I + N+ Q++++ + + + + Sbjct: 522 TRKYQNTVSAEIYVHLHDDEIEFSNDIFQEIYTEVIHQINQSDKLNIDSLVNHPNPSIAN 581 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQ 604 + L + + + + +A+ R L+ ++ EE+ + Sbjct: 582 TVTSILMDEEKHQLSNWEGQNIFVTKATEVLYKAVNDSVFNLRRILIGKKIEELMNEAKD 641 Query: 605 VTAK-GEAEKTAILISILHEVHIQIHQ 630 A + E S+ ++ ++++ Sbjct: 642 NEAPILDLEMIKDYTSLKMKLFNKLNR 668 >gi|284051750|ref|ZP_06381960.1| DNA primase [Arthrospira platensis str. Paraca] gi|291568257|dbj|BAI90529.1| DNA primase [Arthrospira platensis NIES-39] Length = 641 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 163/650 (25%), Positives = 284/650 (43%), Gaps = 37/650 (5%) Query: 1 MNYPR---DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M+ PR D I+++ I ++I + V RR D+ CPFH+EK+PSF + Sbjct: 1 MSIPRIHSDTIEEVKERADIYDIISEKVVLKRRGK-----DFVGLCPFHEEKSPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 SK YYCF C G+ + FL L SF + V LA +PL P+ ++ + Sbjct: 56 SKQMYYCFGCGAAGNSIKFLMELDKSSFSDVVLDLARRYNIPLKTESPEQHQEFQKTLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ +AT F+ H+L+ + + YL R + I+ F+LGYAP ++ + Sbjct: 116 REKLYEILAIATSFYQHALRQPQGEAALEYLKFSRRLGEETIQEFQLGYAPGGWENIYSY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QK F E + +AGL++ YDRFR+RLI PI +G+VI FGGR+L E Sbjct: 176 LVEQKNFPVELVEKAGLIVPRKAGNGYYDRFRDRLIIPIYDIQGRVIGFGGRSL-GDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF KG+ L+ A + K ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFDKGRTLFCLDKAKTAISKQ----------DMAVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 VV+SLGTAL+ Q+RLL + + +I+L FD D G +A +AI ++ + Sbjct: 285 NYVVASLGTALSINQIRLLLRYTESQQIILNFDADAAGTKATERAIGEIETLAYRGEVNL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + L G+D D ++ + + ++ L+ ++ ++ + ++ E + + Sbjct: 345 RILNLPNGKDADEYLYIHTRHDYQDLVAKAPYFLEWQINQIVGGKNIENVAESQRIATAM 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + ++D R Y Q+ + L Q + I + R N S Sbjct: 405 VELLRRVEDLNQRTAYIQSCAEILSQGQSRLIPMLADSLRKQI-NKPVNKHHQASTATKS 463 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDF 526 + + + E LL ++ P QE L + + + + LW + Sbjct: 464 NIISAKRDRTLLEEAEGLLLRIYLHCPEYRQEMINALEAQSLEFSLTKYRFLWMKIAEIE 523 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ---GYQQALA 583 + + E + + ++ ++ + E NI D+++ G + A A Sbjct: 524 LNLQEQQAREDIDLISQ--LQNFDREHSSEISEVSHLFYLNENNINDIQRPSMGIRTATA 581 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + R + ++K K E ++ ++ ++E Sbjct: 582 CLEWVICEKRYLQYLDK-WKNTDIKLNLELAEYYQQQIYAEQKRMKELEQ 630 >gi|283783499|ref|YP_003374253.1| DNA primase [Gardnerella vaginalis 409-05] gi|283441635|gb|ADB14101.1| DNA primase [Gardnerella vaginalis 409-05] Length = 718 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 140/699 (20%), Positives = 250/699 (35%), Gaps = 81/699 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G + CPFHDEKTPSF S G + Sbjct: 32 IVKEDIERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPSLGVW 87 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIR 119 +CF C GD ++ F E+V+ LA + + + + + + L+ Sbjct: 88 HCFGCGAGGDVFKYVEQKENIDFREAVEFLADRYHIEMHYKQEQNNDSQARGSKRARLLE 147 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A FF +L L R F GYAP +L +L KGF+ Sbjct: 148 ANEEAQKFFVSNLGTKEAAPARELLAGRNFTPQQSARFSCGYAPKGWDNLVRYLANKGFT 207 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 +++++AGL G YD FR RL +PIR S G+ + FG R L +S+ KY+N+P Sbjct: 208 RQELLDAGLARLGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINTP 265 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T+L+ K + LY A + K +++VEGY DV++ AG+ V++ Sbjct: 266 DTVLYRKTQVLYGIDLAKANIVKK----------RQVVIVEGYTDVMACHLAGIDTAVAT 315 Query: 298 LGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKAI 335 GTA +++ + +S RIV FDGD G +AA A Sbjct: 316 CGTAFGVEHAKIVRRLIADDSLGAIQLVGPLKVDGQSVSSRIVFTFDGDAAGQKAALHAF 375 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 L L + + DP G A L+ + PL D + Sbjct: 376 GLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLVAHASPLYDFVIDTVINRFET 432 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------ 449 + + + I I+D+ L Y + + E R Sbjct: 433 SYTTGQMGAIKAVAPLIAQIRDRSLLDLYMRKAVRSIGVDLAVMRNEVESARRRLKVRDD 492 Query: 450 ----------WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR--------EAALLLTL 491 + D + + + ++K + R E + L Sbjct: 493 DAYAQKYNVIPPFGQQIHDDRNAGFKASRMGIIKSSAKNQHYYRVDDAVFMCEQQFMALL 552 Query: 492 INHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + P E + +L + + L+ + + + + + + G LL Sbjct: 553 LQVPLAFDEKLFAQLTLNNFITPVFRTLFQAFVAAGGLPVGNVSQGLWLHMMTKAAGPLL 612 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLLSRQKEEIEKQIA 603 + + ++ L ++ D Q + L K S+ E+ ++ Sbjct: 613 ESVITELSVMPLPLPAASDSLEDTGNRQNQQVTNGSPSDFLRKATSAESKYANELLIRLL 672 Query: 604 QVTAKGEAEKTAILISILHEVHIQIH---QIESQEAMIE 639 + + + ++ L + ++ +I S EA + Sbjct: 673 DIGYMRKIGAARVRMAKLKDGQEKLELLGKITSMEAARK 711 >gi|119025516|ref|YP_909361.1| DNA primase [Bifidobacterium adolescentis ATCC 15703] gi|118765100|dbj|BAF39279.1| DNA primase [Bifidobacterium adolescentis ATCC 15703] Length = 695 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 142/705 (20%), Positives = 253/705 (35%), Gaps = 96/705 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 5 IKKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L + L+ Sbjct: 61 HCFGCGLGGDVFGYVEHQENIDFRDAVELLADKYHIELHYDKADNVPAHTGSKRARLLEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A ++F L LD R + F GYAP +L HL KGF++ Sbjct: 121 NEAAQEYFVSQLMTKEALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 +++++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+P+ Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K ++VEGY DV+++ AG+ V++ Sbjct: 239 TQLYRKTQVLYGIDLAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAVATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L R+V FDGD G +AA A Sbjct: 289 GTAFGAEHAKIIRRLIADDSLGAVQLVGPLKVEGQALSSRVVFTFDGDAAGQKAAIHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L + + DP G A LI + PL D + + Sbjct: 349 LDAAFST---QAFVAVAEDNLDPCDLRIKRGNEAVRALIANARPLYDFVIDSAIDRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L YS+ R+ E + R Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRRIGVDLDIMQREVAYQRRKLNMRDED 465 Query: 450 -WKKNARHRDQKGPSQRLM-----QSSLVKGKLSKKPSLR-----------------EAA 486 + R ++ GPS + K R E Sbjct: 466 AYAPKRRFQNNAGPSAEPAYAERGANPYANPAARKALEHRDAAEQSYYRIDDAVFICEQQ 525 Query: 487 LLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + TLI P + + L + + L+ + + +P+ + + Sbjct: 526 FMATLIQVPLAVDPTMFASLTLSSFMTPVFRTLFQAVAAAGGLPGEDVPQGLWMHNLTKA 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-----------------IVDVRQGYQQALALYKRF 588 G +L+ + ++ L +EA+ + Y L + Sbjct: 586 GGPMLESVINELAVMPLPLPPSEADANRNTGESQEQSAQLRKPTQEERRYASELIVRLLD 645 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + R+ ++++AQ+ + + L+ + ++ ++S Sbjct: 646 TGIMRKIGAAQRRMAQLP---DGAEKIELLGQITKLETLRKDLQS 687 >gi|28493255|ref|NP_787416.1| DNA primase [Tropheryma whipplei str. Twist] gi|28572633|ref|NP_789413.1| DNA primase [Tropheryma whipplei TW08/27] gi|28410765|emb|CAD67151.1| DNA primase [Tropheryma whipplei TW08/27] gi|28476296|gb|AAO44385.1| DNA primase [Tropheryma whipplei str. Twist] Length = 603 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 140/636 (22%), Positives = 269/636 (42%), Gaps = 44/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ I +IG+Y + R+ G Y CPFH E+TPSFH G Sbjct: 3 KIKQEVIHEIKERANIREIIGEYTNLKRQ----SAGAYAGLCPFHSERTPSFHV-RETGL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD +SF+ + G +F+++V++LA G+ + + +++L+ Sbjct: 58 YHCFGCGKGGDVISFVQEIEGLNFVDAVEQLARTLGITIVYYEGDSTP--DSRSNLLAAC 115 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A +F+ L ++ +L RG D E +++G++P + L +HLR KGF+ + Sbjct: 116 KSAAEFYSEQLLSSTPAVT--FLKSRGFDRDLCERYQIGFSPTNSGDLYKHLRDKGFTLQ 173 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 + + AGL + + DRFR R+++P++ G ++ FG R L++ + KY+NSPE+ Sbjct: 174 QAVAAGL-----LNPSGMDRFRARIVWPVKDVTGNIVGFGARKLAEDAQGPKYINSPESS 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ K LY F A + K R +++VEGY DV+S Q+G+ V++ GT Sbjct: 229 LYKKNSLLYGFDVAKKAISKKDR----------VVIVEGYTDVMSCHQSGIDEAVATCGT 278 Query: 301 ALTEYQLRLLWKLSPR---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 + +RL+ ++ ++ FDGD G A +A R + +G Sbjct: 279 SWGIGHMRLIKRMLSDSGVLIFAFDGDQAGQHAIMRAFKDSPEIAA---RSYAAIFPKGL 335 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DP G A L+ ++PL + + + T ER + + I D Sbjct: 336 DPCELRIKNGAQAVIDLVERAIPLYEFVINHQLSKCPLGTFPERRAALAKILPFLKEISD 395 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR +Y+ + RL ++ + + + + + Sbjct: 396 RILRDHYTGLVCSRLGIDREQVDLLLPKLEHISSRFHPSKIPWQEDWKKKEFAAPTNPPD 455 Query: 478 KKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFL-FSDFVEQKYFLPE 535 + +L E ++ +L+ + +L+ + D + N L + + + + P Sbjct: 456 ARFAL-EQQVIKSLLQYQHLLERDTAIAMCDYSFHNPTLSFIAQMIGMVIREQNRSISPA 514 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 E + + E L L + + + + ++ LL Sbjct: 515 EFSKLIHSTVPSEYHATLQ------ALEVLPVPVSPDKLDSYLEGLVRSFENQHLLE--- 565 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E + Q++++ EK+ L + E+ Q + + Sbjct: 566 -EKALLLRQLSSEKSLEKSLELRQRIVELEKQRNSL 600 >gi|317475635|ref|ZP_07934896.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] gi|316908205|gb|EFV29898.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] Length = 697 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 161/699 (23%), Positives = 294/699 (42%), Gaps = 96/699 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQATIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPTKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLVQGERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F L+N D R Y RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NQFARDYFQDILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +I+ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F++ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461 + +R Y + L +++ + E + R + Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRNAVRSAEGAPNA 462 Query: 462 PSQRLMQSSLV----------------------------------KGKLSKKPSLREAAL 487 P + +GK ++ E + Sbjct: 463 PKVEGSNPATPTTTNGAALPTGEAAGYDTNAPFPPEDNYISFIPQEGKEGQEFYKYERLI 522 Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528 L ++ + +++ +L ++ + N +++ + + + Sbjct: 523 LQMIVRYGEKIMCNATNDEGQEVPISVIEYVINDLKEDELSFHNPLHRQILTEAAAHIHD 582 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586 + + E +L +L + + ++ + D + Y+ AL + Sbjct: 583 EGFTAERYFLAH-PEAAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ ++S + + + + EK ++ E+ Sbjct: 642 KYAIVSEELKHMMSALQDPAVANNEEKCNAIMKRYSEMR 680 >gi|315651466|ref|ZP_07904489.1| DNA primase [Eubacterium saburreum DSM 3986] gi|315486286|gb|EFU76645.1| DNA primase [Eubacterium saburreum DSM 3986] Length = 588 Score = 334 bits (855), Expect = 4e-89, Method: Composition-based stats. Identities = 147/626 (23%), Positives = 274/626 (43%), Gaps = 50/626 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y D I ++ I ++I YV ++ N Y CPFH EK+PSF + SK + Sbjct: 12 YSNDIIDEVRSANDIVDVISSYVKIQKKGAN-----YIGLCPFHSEKSPSFSVSPSKQLF 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD ++F+ SF E++ LA + LP + + + ++ + + Sbjct: 67 HCFGCGVGGDVITFIRQYENYSFSEALNLLAKRVNIELPQQSDSDKIQNDEKMIILEINK 126 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F+ +L + + Y RG+D+ I F LG++ + L ++L+ G+ + Sbjct: 127 TAAKYFYETLFSEGGSKGLEYFKARGLDARDITHFGLGFSKKTPNDLYQYLKGMGYDDNI 186 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + ++GL + + DRF NR++FPI + +VI FGGR + KY+NSPETI F Sbjct: 187 LKKSGL--INIDERGARDRFWNRVMFPIIDANSRVIGFGGRVI-GDGLPKYVNSPETIAF 243 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K +NLY A + F +L EGYMDV++L + G +N V+SLGTAL Sbjct: 244 DKSRNLYGLNFAKRTKR------------DFFLLCEGYMDVIALHKGGFENSVASLGTAL 291 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T + +LL + + ++VL +D D G+ AA +AI L V + ++ +DPD F Sbjct: 292 TAFHAKLLSRYTKKVVLTYDSDGAGINAAIRAIPL---LKEENINVKVLSMAPYKDPDEF 348 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ G F+K I + + + + N PDER + ++ ++ R Sbjct: 349 IKNLGSEEFQKRIDTADNAFLWEVEIIKKGYNLNEPDERTNFYREVSRMLSTFSEKLERE 408 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ A+ +RL ++ + YG + + K KL + Sbjct: 409 NYTHAVANRLMIDYKSLFDMVNSYGF------------ASNTLKKEEQKEKKKLDDGYTK 456 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + LL ++ + + + ++ + + + + + + +F + Sbjct: 457 AQGLLLTWIVEEVELFDKISKYISPVHFSDGFYRNVATRIFEKIKLGDFKFSNICDDYKE 516 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + +LL ++ T + D ++ +++ L ++ ++++ Sbjct: 517 DIEKQKLLSKILN-------TDLGTNLSDDDKKKAITESI--------LKIRQASLDEES 561 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 E +K SIL ++ + + Sbjct: 562 KNAKGIEEFQKIIEEQSILRKLRVDL 587 >gi|15837032|ref|NP_297720.1| DNA primase [Xylella fastidiosa 9a5c] gi|9105272|gb|AAF83240.1|AE003894_5 DNA primase [Xylella fastidiosa 9a5c] Length = 577 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 165/609 (27%), Positives = 278/609 (45%), Gaps = 47/609 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G + R+ +Y + CPFHDE++ SF+ + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G +SFL F+++V LA AG+ +P + ++ L + Sbjct: 58 YHCFGCGAHGTAISFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQEDSRPLYAAL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A+ FF L+N ++ YL+ERG+D + F++GYAPD L++ L Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AG+L D YD+FR+R++FPI RG+VIAFGGR L K +S KYLNSPET L Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG+ LY + Q R +I+VEGYMDV+SL Q G+ V++LGTA Sbjct: 235 FHKGRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL++ +P + CFDGD+ G +A ++A++ +L + G + F+ L GEDPD+ Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R GK AF + + +++PL + + + + +T D +A L + + I + Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + P +S +L + Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKR 441 Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++ P++ LA + L ++ + + Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500 Query: 540 RLCERGFGELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ER LL+ L Q + W+ + + +++ Q + L++ ++ Sbjct: 501 HFTEREEYVLLQTLATQTMPGNTATWTQELQGAMTQMQKQLLQQRLDALHTKQLTQPLDD 560 Query: 598 IEK-QIAQV 605 I+K ++ ++ Sbjct: 561 IDKYELREL 569 >gi|154486954|ref|ZP_02028361.1| hypothetical protein BIFADO_00787 [Bifidobacterium adolescentis L2-32] gi|154084817|gb|EDN83862.1| hypothetical protein BIFADO_00787 [Bifidobacterium adolescentis L2-32] Length = 695 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 142/705 (20%), Positives = 252/705 (35%), Gaps = 96/705 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 5 IKKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L + L+ Sbjct: 61 HCFGCGLGGDVFGYVEHQENIDFRDAVELLADKYHIELHYDKADNVPAHTGSKRARLLEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A ++F L LD R + F GYAP +L HL KGF++ Sbjct: 121 NEAAQEYFVSQLMTKEALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPE 238 +++++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+P+ Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K ++VEGY DV+++ AG+ V++ Sbjct: 239 TQLYRKTQVLYGIDLAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAVATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L R+V FDGD G +AA A Sbjct: 289 GTAFGAEHAKIIRRLIADDSLGAVQLVGPLKVEGQALSSRVVFTFDGDAAGQKAAIHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L + + DP G A LI + PL D + + Sbjct: 349 LDAAFST---QAFVAVAEDNLDPCDLRIKRGNEAVRALIANARPLYDFVIDSAIDRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L YS+ R+ E + R Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRRIGVDLDIMQREVAYQRRKLNVRDED 465 Query: 450 -WKKNARHRDQKGPSQRLM-----QSSLVKGKLSKKPSLR-----------------EAA 486 + R ++ GPS + K R E Sbjct: 466 AYAPKRRFQNNAGPSAEPAYAERGANPYANPAARKALEHRDAAEQSYYRIDDAVFICEQQ 525 Query: 487 LLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + TLI P + + L + + L+ + + +P+ + + Sbjct: 526 FMATLIQVPLAVDPTMFASLTLSSFMTPVFRTLFQAVAAAGGLPGEDVPQGLWMHNLTKA 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEAN-----------------IVDVRQGYQQALALYKRF 588 G +L + ++ L +EA+ + Y L + Sbjct: 586 GGPMLDSVINELAVMPLPLPPSEADTNRNAGESQEQSAQLRKPTQEERRYASELIVRLLD 645 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + R+ ++++AQ+ + + L+ + ++ ++S Sbjct: 646 TGIMRKIGAAQRRMAQLP---DGAEKIELLGQITKLETLRKDLQS 687 >gi|225350822|ref|ZP_03741845.1| hypothetical protein BIFPSEUDO_02396 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158278|gb|EEG71520.1| hypothetical protein BIFPSEUDO_02396 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 691 Score = 333 bits (854), Expect = 4e-89, Method: Composition-based stats. Identities = 140/703 (19%), Positives = 253/703 (35%), Gaps = 95/703 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + +++ V G Y CPFHDEKTPSF + G + Sbjct: 2 ILKEDIEKVRATADLYDIVSATVTLKPSG----TGTYVGLCPFHDEKTPSFSVRPALGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 +CF C + GD ++ F ++V+ LA + L +K+ + L+ Sbjct: 58 HCFGCGLGGDVFGYVEHQENVDFRDAVELLADRYHIELRYDQSNAKKEHTGSKRARLLEA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FF L LD R + F GYAP +L +L KGF++ Sbjct: 118 NEAAQEFFVSQLMTKDALAARKLLDGRNFSQADCQRFGCGYAPQGWDNLVRYLAGKGFTQ 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++++AGL YD FR R+ +PIR S G+ + FG R L + +S+ KY+N+P+ Sbjct: 178 QEMLDAGLARQ--GQHGVYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDSISAKYINTPD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K ++VEGY DV+++ AG+ +++ Sbjct: 236 TQLYRKNQVLYGIDMAKSAIVKK----------RQAVIVEGYTDVMAMHLAGIDTAIATC 285 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 286 GTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVEGQALSSRIVFTFDGDAAGQKAAIHAFG 345 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L + + DP G A LI + PL D + K Sbjct: 346 LDSAFST---QAFVAVADDNLDPCDLRIKRGNEAVRALIDHAEPLYDFVIKTAIGRFDTT 402 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY------- 449 + + I I+D+ L YS+ ++ E R Sbjct: 403 YTTGQMGAVKAVAPLIAQIRDRSLLDLYSRKAVRQIGVDLDIMQREVRDARRKLQVRDED 462 Query: 450 ---WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-------------------EAAL 487 K+ R+ Q + S + +L E Sbjct: 463 AYAPKRRFAGNAGAAVEPRMEQGTNPYANPSARKALEHRDAAEQSYYRIDDAVFICEQQF 522 Query: 488 LLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + TLI P + + L + + L+ + + P+ + + Sbjct: 523 MATLIQVPLAVDPTLFASLTLSSFMTPVFRTLFQAVAAAGGLPSADTPQGLWMHNLTKAG 582 Query: 547 GELLKQLDRQVRDAGLWSATTEANIV-----------------DVRQGYQQALALYKRFR 589 G +L+ + ++ L ++ + D + Y L + Sbjct: 583 GPMLESVINELAVMPLPLPPSDTDAERASQQSQEGNVQLRKPTDDERRYASELIIRLLDT 642 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + R+ ++++AQ+ + + L+ + ++ ++ Sbjct: 643 GIMRKIGADQRRMAQLP---DGAEKIELLGQITKLETLRKDLQ 682 >gi|333029277|ref|ZP_08457338.1| DNA primase [Bacteroides coprosuis DSM 18011] gi|332739874|gb|EGJ70356.1| DNA primase [Bacteroides coprosuis DSM 18011] Length = 687 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 163/662 (24%), Positives = 281/662 (42%), Gaps = 57/662 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ I +++ ++V +R N Y CPFHDEKTPSF + SK Sbjct: 26 IDQATIDRIMNAAQIVDVVSEFVTLRKRGVN-----YIGLCPFHDEKTPSFSVSPSKQIC 80 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + E+ + + + + Sbjct: 81 KCFSCGKGGNVVHFIMEHEQLNYYEALKFLAKKYNIEIQEKELTAEQIQARSTRESMFVV 140 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F LKN + + Y +RG I F+LGY+ D+R L +KGF Sbjct: 141 NNFARDYFADILKNHPNGKSIGLAYFRQRGFRDDTIAKFQLGYSIDARSGLANEALKKGF 200 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 +E +++ GL + DN +DRF +R+IFP+ + G+V+AFGGRTL+ KY+NS Sbjct: 201 KKEFLVKTGLCYEADNGDI-HDRFWSRVIFPVHTLSGKVVAFGGRTLNTENKRIAKYVNS 259 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++ K LY F A + K + LVEGY DV+S+ QAGV+NVVS Sbjct: 260 PESEIYTKSNELYGIFFAKQAIVK----------ADNCFLVEGYTDVISMHQAGVENVVS 309 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALT Q+RL+ + + I + +DGD G+RA+ + ID+ L G V VLL G Sbjct: 310 SSGTALTTGQIRLIHRFTDNITVLYDGDMAGIRASLRGIDM---LLEEGMNVKVVLLPDG 366 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF R T+F++ I ++ + + P ++AEL + I+ I Sbjct: 367 EDPDSFARKQNATSFQEYIQQNEKDFIRFKTSLLIDEAGEDPIKKAELIADIVKSISVIP 426 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-----------RDQKGPSQR 465 + +R Y + L + E + R R + ++ S Sbjct: 427 EAIIRSVYIKETSQLLHISENILVAEVTKLKREELSKNRRILKREEAKEKEQQEEKSSSP 486 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHP-----------------AILQEQYQEL--A 506 +G+ ++ E ++ T++ + ++++ +L Sbjct: 487 RTSYIPTEGQEGQEFYKFERLIIQTIVRYGNHAICNIVNSEGEEESISVIEYIINDLRQD 546 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWS 564 ++ + N + L +E L L D+ Sbjct: 547 ELEFYNPLHRTLLEESKRFIIEGHQGEISRFFLTHPNPEISRLAADLVSDKYQLSKYHTK 606 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + T + L + + L+ + + + + + + EK L+ E+ Sbjct: 607 SQTITTDEERLDELVPTLLINFKNALVLTEIKHSLQALQKPEIIRDPEKCNSLMEHYLEL 666 Query: 625 HI 626 Sbjct: 667 KQ 668 >gi|71274630|ref|ZP_00650918.1| DNA primase [Xylella fastidiosa Dixon] gi|170730895|ref|YP_001776328.1| DNA primase [Xylella fastidiosa M12] gi|71164362|gb|EAO14076.1| DNA primase [Xylella fastidiosa Dixon] gi|167965688|gb|ACA12698.1| DNA primase [Xylella fastidiosa M12] Length = 577 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 163/609 (26%), Positives = 275/609 (45%), Gaps = 47/609 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G + R+ +Y + CPFHDE++ SF+ + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G ++FL F+++V LA AG+ +P + + L + Sbjct: 58 YHCFGCGAHGTAINFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQDDSRPLYAAL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A+ FF L+N ++ YL+ERG+D + F++GYAPD L++ L Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AG+L D YD+FR+R++FPI RG+VIAFGGR L K +S KYLNSPET L Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK + LY + Q R +I+VEGYMDV+SL Q G+ V++LGTA Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL++ +P + CFDGD+ G +A ++A++ +L + G + F+ L GEDPD+ Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R GK AF + + +++PL + + + + +T D +A L + + I + Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + P +S +L + Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKR 441 Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++ P++ LA + L ++ + + Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500 Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ER LL+ L Q W+ + + +++ Q + L++ ++ Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560 Query: 598 IEK-QIAQV 605 I+K ++ ++ Sbjct: 561 IDKYELREL 569 >gi|171779915|ref|ZP_02920819.1| hypothetical protein STRINF_01702 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281263|gb|EDT46698.1| hypothetical protein STRINF_01702 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 608 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 151/634 (23%), Positives = 268/634 (42%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V+ R N Y CPFH EKTPSF+ + K F Sbjct: 17 AIDKELITEIKNSVNIVDVIGEVVNLTRAGRN-----YIGLCPFHKEKTPSFNIIEDKQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIRL 120 ++CF C GD FL SF+ESV R+A AG+PL V + + K + LI + Sbjct: 72 FHCFGCGKSGDVYKFLEEYHQISFLESVHRVAERAGIPLQVETQQAQAKPQNPNQVLIDI 131 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ LK + + YL +RG+ I+ F +G +P+ L + L ++ + Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKAYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YE 190 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235 E ++ +GL + + YD F+NR++FP+ GQV+AF GR +K + KY N Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDNGQVVAFSGRIWTKEDLDSQQAKYKN 250 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + T LF+K LY+ A + K + L+EG+MDV++ +AG++N V Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + +++L +DGD+ G A K+++L+ V V + Sbjct: 301 ASMGTALTPEHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELL-----KDFSVEIVRVPE 355 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ A L+ S + + + + + I Sbjct: 356 QMDPDEFIQKNSPQALANLLENSRISSTEFFIHYLKPENTDNLQAEIAYVEKISRIIAQS 415 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R ++A + QR+ L K Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSA--LQSEAAKQRVTVVELPISK 473 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E+ L+ L+ H +L E + + +D ELQ L+ L Sbjct: 474 NVSAIMKAESQLMQRLLTHDYLLNEFRNQ-EEFTFDTQELQTLYDLLMQQGE-------- 524 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + +L + + + + ++ + Q+ L + R Sbjct: 525 -----VTSYDLAQLDDRTRQMYYQVLEENLPEDVAPNEIEEIIQKRNRLLQ-----ERDL 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ K I + + G+ + + L ++ Sbjct: 575 QKQSKLIRESSNLGDVDAALEALENLIAQKRKME 608 >gi|227518712|ref|ZP_03948761.1| DNA primase [Enterococcus faecalis TX0104] gi|227073892|gb|EEI11855.1| DNA primase [Enterococcus faecalis TX0104] Length = 560 Score = 333 bits (854), Expect = 5e-89, Method: Composition-based stats. Identities = 155/575 (26%), Positives = 264/575 (45%), Gaps = 41/575 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------- 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPP 465 Query: 461 -GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 ++ + + E +LL L+N + Q Q+L D + ++E Q+L+ Sbjct: 466 PMEEPVFEENHVQNKLPLTQVQKAERSLLFRLMNEQGVRQTI-QQLPDFSFAHDEYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 L S + F + L + +L ++ Sbjct: 525 FLLESYATLHQSFDIADFINFLQDNQTKQLAIEIA 559 >gi|55823394|ref|YP_141835.1| DNA primase [Streptococcus thermophilus CNRZ1066] gi|55739379|gb|AAV63020.1| DNA primase [Streptococcus thermophilus CNRZ1066] Length = 603 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MAIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G +PD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E + +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD PG A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPTNVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + D + EL++L+ L D Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L +++ E N+ +V QA+ Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|87119777|ref|ZP_01075674.1| DNA primase [Marinomonas sp. MED121] gi|86165253|gb|EAQ66521.1| DNA primase [Marinomonas sp. MED121] Length = 651 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 171/675 (25%), Positives = 296/675 (43%), Gaps = 78/675 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL + I+++I + + N Y A CPFH+EK+PSF N +K F Sbjct: 4 RIPDQFIDELLARVDITDIISSRLTLRKTGQN-----YSALCPFHNEKSPSFSVNPAKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SF+ F+E+++ LA AG+ +P + + DL+ + Sbjct: 59 YYCFGCGAGGNAISFVMENDHLDFVEAIELLAKDAGMEVPREQG-APDRYEQNADLLNQL 117 Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + FF L K Y ERG+ ++F LG+AP +L + L + G Sbjct: 118 TQSASFFQKQLIENEQKTKATDYLAKERGLSGQIAKVFGLGFAPPGWDNLLQTLGKSGDQ 177 Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E+++ AG+LI D + YDRFR+R++FPIR SRG+VIAFGGR E KYLNSPE Sbjct: 178 KEQLLLAGMLIEKKDQAGHFYDRFRDRIMFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + LY + A I++VEGYMDV+ L Q G+ N V++L Sbjct: 237 TPVFQKSQELYGLYEAKQ----------NTQQLDHILIVEGYMDVIVLAQHGITNAVATL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT++ ++ L+KL ++ LCFDGD G AA + ++ L + G +V F+ L GED Sbjct: 287 GTSVNSNHIKKLFKLVSKVTLCFDGDKAGRAAAIRGLEATLPVMQDGKQVRFLFLPEGED 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AF + + +S L +L++ + + A+ ++ + I + + Sbjct: 347 PDSLVRDIGKDAFTEKLEDSSSLSHVLFEHARNQVTLADEEGEAQFAQNVMSQIQALPEI 406 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---------------- 462 + + + ++ K + Y R + + + Sbjct: 407 TYKSVLLKQLEEQAGIDTSKLSAQKPKYQRTAEPAQQQHYDEAQYTDYDDIPLPEHLAYD 466 Query: 463 -------------------SQRLMQSSLVKGKLSKKPSL----------REAALLLTLIN 493 ++ + S KGK + L E A+L L+ Sbjct: 467 HDEPHYDYSSTPAETGYQTKKKNSKKSFGKGKWQDQEELPPPMAIALTQTEHAILCLLL- 525 Query: 494 HPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 HP + + E+++ +L +++S ++ F + + + E + Sbjct: 526 HPNVAADI--EVSEPLLRQPDLDMQIFSKVWRFFNKHSDKNLGHLLGNWQNQEQTEKIYY 583 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 L A T++ +++ +Q + +A + L+ ++ + + Sbjct: 584 LLN------HQDAHTKSKLINAKQEVKDMIASKEESLGLNNAISRLKSKGNETIKDNN-- 635 Query: 613 KTAILISILHEVHIQ 627 + + L E + Sbjct: 636 -SREELRRLIEQMRK 649 >gi|149376142|ref|ZP_01893907.1| DNA primase (bacterial type) [Marinobacter algicola DG893] gi|149359547|gb|EDM48006.1| DNA primase (bacterial type) [Marinobacter algicola DG893] Length = 577 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 177/611 (28%), Positives = 289/611 (47%), Gaps = 40/611 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F++DLL + ++ LIG + + N Y A CPFHDEKTPSF+ KGFY Sbjct: 5 IPQRFVEDLLDRVDLAELIGSRITLKKAGGN-----YKARCPFHDEKTPSFNVRPDKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G F ++V+ LA AG+ +P D ++ + L ++ Sbjct: 60 HCFGCGAHGDAISFVREFDGLGFTDAVEELARRAGMEVPY-DQSARQEMQQARTLTDALD 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A+ F+ +LK + + YL +RG+D IE ++LGYAP + +L + + + + Sbjct: 119 YASRFYQSALKGQQGEFARDYLKQRGLDDSIIEQYQLGYAPGTGTALFDSASR----DLQ 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 D D FRNR++FPIR+SRG+ IAFGGRTL + KY+NSPE+ +F Sbjct: 175 GPLVETGTVSDRYGRPRDLFRNRVMFPIRNSRGRTIAFGGRTL-GDDKAKYINSPESDVF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK + +Y + A +++ R +++VEGYMDV++L Q G+ V++LGTA Sbjct: 234 HKSREIYGLYEAKQSIRQLDR----------LLVVEGYMDVIALAQNGIHFAVATLGTAT 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L L K +V CFDGD G RAA KA++ L L G + F+++ GEDPD+ Sbjct: 284 NQDSLSALLKQVRHLVFCFDGDQAGYRAADKALENALELLTDGLHLQFLMMPDGEDPDTL 343 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G AF++ I + PL L+ R++E P++R EL+ ++ + + LR Sbjct: 344 VRKEGPDAFQERINGATPLSRYLFNRQSEGLDLTLPEDRGELKARVEPLLKKMPRSTLRD 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + W+ + + G +R +Q + KLSK Sbjct: 404 AMWHEMLRLCG-----------NNRGDWQNRRQPNGKGGYGERRVQEQRIDVKLSKDT-- 450 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L L L+ P + E + L + + ++ ++ + L E+ Sbjct: 451 ---QLCLALLEAPDMASEIAE-LCRSSRQYRQAGQFAGWILERAIKDRRSLVRELATDNR 506 Query: 543 ERG-FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 R F L ++ R+ L A N Q+ +L R L+ E + Sbjct: 507 AREQFYNLFDGIEHIPAREQTLAGAREMLNPNREVARKQRLTSLLSEKRSLADLSAEERQ 566 Query: 601 QIAQVTAKGEA 611 ++ +T + + Sbjct: 567 ELKALTGQNDD 577 >gi|28199524|ref|NP_779838.1| DNA primase [Xylella fastidiosa Temecula1] gi|182682257|ref|YP_001830417.1| DNA primase [Xylella fastidiosa M23] gi|28057639|gb|AAO29487.1| DNA primase [Xylella fastidiosa Temecula1] gi|182632367|gb|ACB93143.1| DNA primase [Xylella fastidiosa M23] gi|307578532|gb|ADN62501.1| DNA primase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 577 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 163/609 (26%), Positives = 276/609 (45%), Gaps = 47/609 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++G + R+ +Y + CPFHDE++ SF+ + +K F Sbjct: 3 RIPDAFIDELLARTDIVEVVGSRLPLKRQGK-----EYASRCPFHDERSASFYVSPTKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G ++FL F+++V LA AG+ +P + + L + Sbjct: 58 YHCFGCGAHGTAINFLMNYDRLEFLDAVDELAKRAGMEIPRETQQKHAHQDDSRPLYAAL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A+ FF L+N ++ YL+ERG+D + F++GYAPD L++ L Sbjct: 118 EAASHFFQKHLENN--PKVQAYLNERGVDINTRTRFQIGYAPDGYSVLKDTLGTDERRIT 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AG+L D YD+FR+R++FPI RG+VIAFGGR L K +S KYLNSPET L Sbjct: 176 LLDRAGMLSKNDRDH-VYDKFRDRVMFPIFDRRGRVIAFGGRVLDKDKSPKYLNSPETTL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK + LY + Q R +I+VEGYMDV+SL Q G+ V++LGTA Sbjct: 235 FHKSRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL++ +P + CFDGD+ G +A ++A++ +L + G + F+ L GEDPD+ Sbjct: 285 TTVEHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R GK AF + + +++PL + + + + +T D +A L + + I + Sbjct: 345 IVRKEGKNAFNERLKQAIPLSQFFFDTLSSDIALHTLDGKARLAERARPLLMKIPEGAFN 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + + P +S +L+ + Sbjct: 405 DLMRQRLAHLTGV-----------------------NIAHPGPATAATSRPATRLTAQKR 441 Query: 482 LREAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++ P++ LA + L ++ + + Sbjct: 442 NLIHTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLE 500 Query: 540 RLCERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ER LL+ L Q W+ + + +++ Q + L++ ++ Sbjct: 501 HFTEREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDD 560 Query: 598 IEK-QIAQV 605 I+K ++ ++ Sbjct: 561 IDKYELREL 569 >gi|312866185|ref|ZP_07726406.1| DNA primase [Streptococcus downei F0415] gi|311098589|gb|EFQ56812.1| DNA primase [Streptococcus downei F0415] Length = 597 Score = 333 bits (853), Expect = 6e-89, Method: Composition-based stats. Identities = 147/638 (23%), Positives = 262/638 (41%), Gaps = 50/638 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K Sbjct: 1 MAFDKSLISEIKNSVNIVDVIGEVVKLTKSGRN-----YLGLCPFHQEKTPSFNVIEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119 F++CF C GD FL +F+ESV+ L+ G+ L V + + K+ L Sbjct: 56 FFHCFGCGKSGDVFKFLEEYRQITFMESVKILSERIGMDLALEVPNQTQAKQNPHQKLFD 115 Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A+ F+ LK + + YL +RG+D I+ F +G APD + Sbjct: 116 INQDASKFYQAVLKTTKVGEVARNYLYQRGLDDQMIDYFNIGLAPDESN-YLYQSLSPRY 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYL 234 E+ I+ +GL + + +D FRNR+IFP+ G VI F GR ++ + KY Sbjct: 175 DEDTILNSGLFNLS-EAGSIFDSFRNRIIFPLTDENGHVIGFSGRIWTQADQDRKEAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A + K S + L+EG+MDV++ +AG++N Sbjct: 234 NTRATTIFNKSYELYHLDKARPVMAK----------SHEVYLMEGFMDVIAAYRAGIENA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT ++ L K + +++L +DGD G A K++D++ V V + Sbjct: 284 VASMGTALTPEHVKHLKKFTKKVILTYDGDKAGQNAIAKSLDILQ-----DLTVEIVRIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD FI+ KL+ +S W + + + + I Sbjct: 339 NQMDPDEFIKANSADELAKLLTQSRISSTEFWIQYLRPENVDNLQTEIAYVERIAKIIAG 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR---YWKKNARHRDQKGPSQRLMQSSL 471 + + Y + + L + + R D G + R + + L Sbjct: 399 VTSITAQNTYINRVAEDLPDFDYFQVEQSVNNERLKLRANAGNTQSDPYGQASRPILTEL 458 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K E L L+ + +L + D +++ +L+ L+ L E Sbjct: 459 PVSKTLSAVQRAENQLFYRLLQYDYLLNDFRNR-EDFAFESPQLEALFQ-LLRQKGEISD 516 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L + + + L +++ + + + Y+Q L KR ++ Sbjct: 517 LDLAEMTDDLRQAYYSVQEENLPQEMSEGEISGL------EERIARYRQEEELRKRSKI- 569 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I + G+ E+ + + + Sbjct: 570 ----------IRDSSNHGDDERAIMELQAFIAQKRNME 597 >gi|87302210|ref|ZP_01085035.1| DNA primase [Synechococcus sp. WH 5701] gi|87283135|gb|EAQ75091.1| DNA primase [Synechococcus sp. WH 5701] Length = 690 Score = 333 bits (853), Expect = 7e-89, Method: Composition-based stats. Identities = 169/641 (26%), Positives = 288/641 (44%), Gaps = 62/641 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+K+PS + +K F Sbjct: 9 RLHPRTIEAVKERADIVDVVGEHVVLKKKGR-----EFVGICPFHDDKSPSMTVSPAKQF 63 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL L SF E V LA +P+ +D +++ + + L Sbjct: 64 YYCFSCGAGGNAIKFLMELQRISFSEVVLDLARKYQLPVETLDGPQQERLRRQLSRREAL 123 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +R + +A +F L++ YL + RG+ I+ F LGYAP+ L HL Q Sbjct: 124 LRALGLAAGWFRSQLRSPEGAGALAYLSKERGLSEGTIDAFDLGYAPERWDGLLNHLGQV 183 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + + E + AGL++ YDRFR+R++ PIR +G+VI FGGR+L GE KYLN Sbjct: 184 ENLAPELLEAAGLVVPRKGGDGFYDRFRHRVMVPIRDRQGRVIGFGGRSLDGGEP-KYLN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K ++VEGY DV++L AG+ N V Sbjct: 243 SPETEVFEKGKHLFGLDRASNAIRKD----------DQAVVVEGYFDVIALHAAGITNAV 292 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ L + R+VL FD D G+RAA +AI V + G + + Sbjct: 293 ASLGTALSSQQITQLCRCCDSRRLVLNFDTDGAGVRAAQRAIGAVEQQALQGQLELRVLH 352 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ +G + L+ + +D ++ E + D+ + L + Sbjct: 353 LPAGKDPDEFLQQHGAGEYRALLERAPLWLDWQIEQALEGKDLARSDQFQQAVASLVELL 412 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + R K R + ++ + L Sbjct: 413 GKLPQSAVRSHYLQQVAERLSGGQARLAQKLEEDLRQQVKGERWHGRASRWEQPGEIGLR 472 Query: 473 KGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528 EA LL ++ H ++ + ++ + + LW+ + + Sbjct: 473 --------ERAEAELLRLYLHAGRHRGAIRRELRQRELEDFAIAHHRLLWASISELEEDN 524 Query: 529 ---------------QKYFLPEEIHQRLCERGF---GELLKQLDRQVRDAGLWSATTEAN 570 ++ + L +R ELL +L + + L Sbjct: 525 LGVGRLEAINRGSDPGDDLADLDLPRLLSDRLLVEESELLNRLTPLLEPSELQRMALAEP 584 Query: 571 IVDVR--QGYQQALALYKRFRLL-----SRQKEEIEKQIAQ 604 ++ +R + KR R L S++ E +E+ IA+ Sbjct: 585 LLQLRGTTAVLERQRSLKRCRHLLDAWGSQRLETLERCIAR 625 >gi|228477004|ref|ZP_04061642.1| DNA primase [Streptococcus salivarius SK126] gi|228251023|gb|EEK10194.1| DNA primase [Streptococcus salivarius SK126] Length = 603 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 153/644 (23%), Positives = 265/644 (41%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVRIDAPRQAQQQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G APD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E S +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKDDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD G A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + + + EL++L+ + Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-EEFFFQTPELEELY-HILKQ 516 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + Q + + ++L+++ E ++ +V QA+ Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHLLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|153953575|ref|YP_001394340.1| DNA primase [Clostridium kluyveri DSM 555] gi|219854197|ref|YP_002471319.1| hypothetical protein CKR_0854 [Clostridium kluyveri NBRC 12016] gi|146346456|gb|EDK32992.1| DnaG [Clostridium kluyveri DSM 555] gi|219567921|dbj|BAH05905.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 590 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 166/630 (26%), Positives = 283/630 (44%), Gaps = 41/630 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I+ + I ++I + V R N Y CPFH+EKTPSF + K Y Sbjct: 2 ISEDVIQRIKEENDIVDVISEKVKLKRSGRN-----YLGLCPFHNEKTPSFSVSRDKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F+ +F+E+++ LA + + + K +K +L +L Sbjct: 57 KCFGCGEAGNVITFIMKSQNLNFLEAIELLADRVNIDIDLSKNKNNRK-STFENLYKLNV 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F +SL + + YL RGI H I F LGY+ DS + L+ KGF+E Sbjct: 116 EAARYFFYSLNKNKSAKS--YLLNRGITEHTIIKFGLGYSNDSWNHMMNFLKDKGFTELD 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ GL+I YDRFRNR++FP+ RG++I FGGR L + KYLNSPET LF Sbjct: 174 MVSNGLIIKS-EKGNYYDRFRNRIMFPVFDYRGKIIGFGGRVLDNSKP-KYLNSPETPLF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY A+ N+S +I+VEGYMD +SL Q G++NVV+SLGTAL Sbjct: 232 KKGVNLYGLNFAIKS-----------NTSRTLIIVEGYMDCISLHQYGIKNVVASLGTAL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ K +++L +D D G A +++ + G V + + +G+DPD F Sbjct: 281 TVNQAKLMAKYVDKVILSYDADKAGEIATLRSMSI---LKNVGLEVKILSIPQGKDPDEF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR G+ +F +LI E+ L++ K +N FN + A+ + + + + R Sbjct: 338 IRNNGRESFMELIQEADDLIEYRIKNIKKNIDFNNSQDIAKYTEKVLKILVEL-NPIERE 396 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + + Q + NA+ +K + + K L Sbjct: 397 IHIKKLWEDTGIKEQILHDMLNI-------NAQKNVKKDVNMNIDMGFGQKLYLEPAYLK 449 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A L ++ + + ++ + +K++ ++ KY ++ + + Sbjct: 450 AERAFLKLILENDEAFKYSLNKIGNGELILESHKKIYEYIIE---NMKYDDAQKRKKYIE 506 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + +D + + + + + + L K+ I +I Sbjct: 507 LKCVD-----IDTSKEWINIMETEVQYDNEEWMNMLHNFIN-RIKKYKLEEYKKNIIGKI 560 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + +KG E++ L + +I +I+ Sbjct: 561 KEYESKGNLEESLKFAQQLMGIQKRIGEIQ 590 >gi|322516347|ref|ZP_08069272.1| DNA primase [Streptococcus vestibularis ATCC 49124] gi|322125080|gb|EFX96473.1| DNA primase [Streptococcus vestibularis ATCC 49124] Length = 603 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 154/644 (23%), Positives = 267/644 (41%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQQQNSPNQTFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G APD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E S +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG NV Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNV 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD G A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + + + EL++L+ + Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMVNHPMILNDYRMR-EEFFFQTPELEELY-HILKQ 516 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + Q + + ++L+++ E ++ +V QA+ Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L+ + + KQI + + G+ + + +L + Sbjct: 560 RNHFLMEQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|322385456|ref|ZP_08059100.1| DNA primase [Streptococcus cristatus ATCC 51100] gi|321270194|gb|EFX53110.1| DNA primase [Streptococcus cristatus ATCC 51100] Length = 600 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 138/634 (21%), Positives = 256/634 (40%), Gaps = 48/634 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + K FY Sbjct: 8 LDKEMISEIKNSVNIVDVIGETVALTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFY 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+ L ++ L + Sbjct: 63 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGISLGMERAGADRPRQAHPHQALYDI 122 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F++G AP+ L + + K Sbjct: 123 HTEAAKFYHAVLMTTKIGEEARAYLYQRGLTDEVIKHFQIGLAPNEGNYLHKSMAGKFDE 182 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLN 235 + + +N YD F+NR++FP+ + +GQV+AF GR ++ KY N Sbjct: 183 STIMNSGLFNLAENNLV--YDAFQNRIMFPLTNDKGQVVAFSGRIWQDSEAGSQTAKYKN 240 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S + L+EG+MDV++ +AGV+N V Sbjct: 241 SRSTPIFNKSYELYHLDKAKPVIKK----------SHEVYLMEGFMDVIAAYRAGVENAV 290 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT ++ L + +I+L +DGD G A KA++ + V V Sbjct: 291 ASMGTALTPEHVQHLRRYCKKIILTYDGDKAGQAATAKALEEL-----RDMSVEIVSFPD 345 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI + + ++ R + + + E + I Sbjct: 346 DMDPDEFIAKNSAEELRQFLTKTRISDVEFLLRYLKPDNIENLQAQIEFVERMAPIIAQT 405 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + Y + + L + + R ++++R Q +R + L K Sbjct: 406 QSITAQNSYIYMLAELLPDFDYQQVENTVNNSRLAERSSRSGQQSESLRRPVLVDLPLSK 465 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E +L ++++P +L + F Q+ + Sbjct: 466 QLSRLIKAEIHILYRMVHNPLVLNSYR---LRTDFA-----------FDTAELQELYELL 511 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + L +++ + E ++ G + L + LL + Sbjct: 512 LANGEVTSQDLSSLPERVQQLWYR-----MLEEDLPEEMEDGELAEVELTRERELLRKNN 566 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K++ + G+ + + L ++ Sbjct: 567 QLISKKVREALHTGDENAAILEVERLIAQKRRME 600 >gi|170077959|ref|YP_001734597.1| DNA primase [Synechococcus sp. PCC 7002] gi|169885628|gb|ACA99341.1| DNA primase [Synechococcus sp. PCC 7002] Length = 644 Score = 333 bits (852), Expect = 8e-89, Method: Composition-based stats. Identities = 146/656 (22%), Positives = 268/656 (40%), Gaps = 50/656 (7%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M YP + I+++ + I+ ++ YV +R D CPFHDEKTPSF + Sbjct: 1 MAYPSIHPETIEEIRAKVDIAEVVSDYVVLKKRGK-----DLLGLCPFHDEKTPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKI 113 +K FY+CF C G+ + FL + F + V LA VP+ P +I+++ + Sbjct: 56 TKQFYHCFGCGAGGNAIKFLMEINKSPFAQVVLDLAQRYQVPVKTLEPEQHQEIQRELSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ +A DF+ +SL+ + Y ++R + I+ F LGYAP +L + Sbjct: 116 KEQLYEIVAIANDFYQYSLRQPEGQTALAYVREQRRLTEATIQNFGLGYAPGGWDTLYHY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QK + + + +AGL+ + YD+FR+RL+ PI +G+ IAFG RTL E Sbjct: 176 LVEQKRYPIDLVEKAGLIKPRQSGNGHYDQFRDRLMIPIYDVQGRAIAFGSRTL-TNEEP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF K + L+ A + K ++VEGY D ++L AG Sbjct: 235 KYLNSPETPLFDKSRTLFALDQAKGAIAKQ----------DAAVVVEGYFDAIALHAAGF 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RV 348 +N V+SLGTA T+ Q++ L + + +I+ FD D G++A + + + + G +V Sbjct: 285 ENAVASLGTAFTQGQIKQLLRYTDSKQIIFNFDADKAGIKATQRTLTEIGPLIYSGQAQV 344 Query: 349 NFVLLSRGEDPDSFIRCYG-KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + L G+D D F++ ++ + + +D ++ + D+ + Sbjct: 345 RILNLPGGKDADEFLQTDQGPAQYQTALTTAPLWLDWQLEQILLGQDVTQADQFQGVIKQ 404 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP--SQR 465 + I I R +Y + + Y + R + P + Sbjct: 405 MIRLIAKIDHPSFRSHYIAKASELINHEDSHYKKQLEATLLTQVNRFRKAQARNPTATPE 464 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLF 523 + ++ + + E LL ++ PA LA+ + + + LW + Sbjct: 465 VQPEAIAISSQTIALAQAEELLLRIYLHSPAQRHPIEARLAEKEVMFSLSHHRWLWQQIL 524 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 +E K + + G +L L + + L Sbjct: 525 ETPLEIK-------QNHVHNQLLGRMLDILTHHPERMHSLGSLLYLTETTEIDVRRATLN 577 Query: 584 LYKRFRLLS-----RQKEEIEKQIAQVTAKG-EAEKTAILI----SILHEVHIQIH 629 ++ L + + +++ + + + L + + Sbjct: 578 IHAAIATLEHVNWTQHRRYCQEKWQGLDPQHPDFAYYLREFEQADRKLKAIAQERQ 633 >gi|315613016|ref|ZP_07887927.1| DNA primase [Streptococcus sanguinis ATCC 49296] gi|315315126|gb|EFU63167.1| DNA primase [Streptococcus sanguinis ATCC 49296] Length = 591 Score = 333 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 138/629 (21%), Positives = 257/629 (40%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + ++ L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPIQSRPQQLSPHQALYDMHEE 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K + Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERNYLYQRLSGKFEEKNL 182 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNSPETI 240 + + +D F R++FP+ + +GQVIAF GR ++ KY NS T Sbjct: 183 LDSGLFY--LSDDNQFFDTFFGRIVFPLTNDKGQVIAFSGRIWQEMDSQTAKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ S+ + Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISIPVTRQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE------------- 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E + ++ + + + LLS+ I+K Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELME-----VEATRNRALLSKDNLRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591 >gi|300813855|ref|ZP_07094160.1| DNA primase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512042|gb|EFK39237.1| DNA primase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 600 Score = 333 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 283/633 (44%), Gaps = 48/633 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++++ + I LI QYV+ R N Y CPFH+EKTPSF + SKG + Sbjct: 5 IDDNLLEEIRDKVDIYELISQYVNLKRSGAN-----YIGLCPFHNEKTPSFSLSPSKGIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 CF C GD +SF+ G F E+++ LA + L K ++ + + Sbjct: 60 KCFGCGEGGDVISFVMKREGFGFREAIKFLADKYNIELRQAHYSKKDKELKDKAQRFYEI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF+++LK + K YL +R I I + LG+A DS +L+ HL G+ E Sbjct: 120 NRQAALFFYNNLKKS--KLGMNYLRKREISPAVINKYGLGFANDSWDNLKNHLLSLGYKE 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+++E LL +YDRFRNR++FPI ++G+VIAFGGR L E KYLNS E + Sbjct: 178 EELVEINLLSSSKG--KTYDRFRNRIMFPIIDTKGRVIAFGGRVL-GDEKPKYLNSSENL 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NL+N + IILVEGYMDV+SL +G+ V+SLGT Sbjct: 235 IFHKGSNLFNLNLISKEASR-----------DKIILVEGYMDVISLYNSGINYSVASLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT+ Q L+ + + I +C+DGD G+ A +AID++L G + L+ G DPD Sbjct: 284 SLTQAQAGLIKRYAKDIYICYDGDSAGINATVRAIDIMLSE---GISPKIISLAEGLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YGK +FE + +D + ++ D ++ + ++ IK+ Sbjct: 341 EYIKKYGKISFEGQVANGKSFLDFKIDNLKGKFNLSSSDGLSKFTMEAGKILSSIKNPIE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + S + K + +K KGKL Sbjct: 401 RDVYMKNFCKTYGISTISLNSYISLINKNRPKKKFDKPKKI--------IKPKGKLQSGN 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ + ++ + + E++ ++ L + + K ++ + Sbjct: 453 IKAQKGLIAYCLAGHDFYDYIKSKVELTLFSSVEIRIIFEELENYY--DKKIEKDDFFKD 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L +G L + L E N L + L ++KE + Sbjct: 511 LINKG----LVSSETYKEIISLIVDEPEGNK------IISDYLLTLKRSWLLQEKENLLN 560 Query: 601 QIAQVTAKG--EAEKTAILISILHEVHIQIHQI 631 Q+ + + E +I+ L ++++++ I Sbjct: 561 QLDSIAKSNSKDKEIFEKVINDLRTINLELNDI 593 >gi|28211634|ref|NP_782578.1| DNA primase [Clostridium tetani E88] gi|28204076|gb|AAO36515.1| DNA primase [Clostridium tetani E88] Length = 589 Score = 333 bits (852), Expect = 9e-89, Method: Composition-based stats. Identities = 166/631 (26%), Positives = 293/631 (46%), Gaps = 44/631 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + I ++I + V R Y CPFH+EK+PSF +K Y Sbjct: 2 ISKDVIQKVKESNDILDVISERVRLKRSGR-----YYMGLCPFHNEKSPSFTVTPNKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F+ F+++V LA A + + + + KK+ + +L ++ Sbjct: 57 KCFGCGEAGNVITFVMKTRNLPFVDAVHLLADRANIEVTYENGEAPKKDA-KEELYKINV 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F ++L+ K+ YL RG+ I F +GYA D L +L++KG++E Sbjct: 116 EAARYFFNNLRKN--KKALNYLQNRGLLQKTINNFGIGYAEDKWDGLLNYLKKKGYTELD 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ AGL+I G+ YDRFRNR++FP+ RG+VI FGGR L + KYLNSPET +F Sbjct: 174 MLAAGLIIKGNKRNI-YDRFRNRIMFPVFDYRGRVIGFGGRVLDNSKP-KYLNSPETHVF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG NLY I + N ++ +I+VEGYMD ++L Q G+++ V+SLGTAL Sbjct: 232 KKGTNLYG-----------INFAINNNMNNMLIIVEGYMDCIALHQCGIRSAVASLGTAL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + ++++ +D D G +A + +D+ G V +++ +GEDPD F Sbjct: 281 TPNQAKLLKRYANKVIISYDADLAGQKATQRGLDV---LKEQGLDVRVLMMPKGEDPDDF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ +GK AF +LI SL L+D K+ E + P+ + N + ++ R Sbjct: 338 IKKHGKEAFLELIDRSLQLIDYKLKKALEGVNLKDPEGVIKYVNRAINILKDLQ-PIERE 396 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + D + Q + + N+ + + + K L Sbjct: 397 IYIKRLSDETKLKSQVLYDLLNNKLQKDVNNS-------INVNIQEVLGNKLYLEPSYVR 449 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L+ ++I I + ++ + + + + + ++ EEI + Sbjct: 450 AGRVLIKSIIESEIIKDYVFHNISVDEFILKSHRDIINIILENY----DLGIEEIKSNIE 505 Query: 543 -ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E++K+ + + N D + Q + L + ++I+++ Sbjct: 506 MSYEDSEIIKEWIN-------IQDSKKINENDDYKVIVQDFIKEIKKYKLEEKIKKIKEE 558 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 I + A+G EK+ L L + Q+ + Sbjct: 559 IKKFEAEGNIEKSLSLAKELINIQRQLSDTQ 589 >gi|295700834|ref|YP_003608727.1| DNA primase [Burkholderia sp. CCGE1002] gi|295440047|gb|ADG19216.1| DNA primase [Burkholderia sp. CCGE1002] Length = 624 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 173/656 (26%), Positives = 277/656 (42%), Gaps = 65/656 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPPSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-------- 114 +CF C G + FL +G SF E+V LA G+ +P Sbjct: 57 HCFGCGAHGTAIGFLMEHVGASFPEAVNELAQSVGLTVPNEPSPGYGGGGGTAGGYAPGA 116 Query: 115 -----TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L L++ A D++ L+ A YL +RG+ F LGYAP+ Sbjct: 117 SKAVTTALSDLMQTACDYYRKQLRGAPGA--IQYLKKRGLTGEIAARFGLGYAPEGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R E ++ D YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFPNYRDDALVEAGLVIVSEKSDAQGQNRRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ ++++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EQHYVLVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G QN V++LGTA T ++ L + + ++ FDGD G RAA +A+D L H Sbjct: 284 AQLGFQNAVATLGTACTPIHVQKLMRQTDTVIFSFDGDAAGRRAARRALDACLPHAADNR 343 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F+ L DPDS++R +G AF + + ++PL + + + P+ +A Sbjct: 344 TIRFLFLPSEHDPDSYVREFGTEAFAEQVERAMPLSQFMLNEVLTGKELDQPEGKARALF 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + + LR DRL F + R Sbjct: 404 DAKPLLQALPANALRAQIMHMFADRLDVPFSEVAALCEVDARIA---------------A 448 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 K + + E L L+ +P + +E + +L++ + + Sbjct: 449 AAREAPARKDRRSVTGIEEKTLRNLVMYPRTVAMLDEEAEEALLTVTRHGELFAEVTTHA 508 Query: 527 VEQKYFLPEEIHQRLCERG-----FGELLKQL---DRQVRDAGLWSATTEANIVDVRQGY 578 ++ L G F E+ +++ D VRD L A I + R+ Sbjct: 509 RALGDSAAFQLLSDLLRNGANAPTFEEIFRKILDYDENVRDLLLKDPQDAAVIEERREQE 568 Query: 579 Q------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + +A L R+ + E++ +Q + + + L ++ Q+ Sbjct: 569 RIVGEELKAAILKMRYDAYCDRLEQLSRQSRHTPEEF--AEFSELNRKRADMKRQL 622 >gi|77409565|ref|ZP_00786247.1| DNA primase [Streptococcus agalactiae COH1] gi|77171830|gb|EAO75017.1| DNA primase [Streptococcus agalactiae COH1] Length = 593 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 154/635 (24%), Positives = 274/635 (43%), Gaps = 48/635 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + Sbjct: 1 MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 F++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ Sbjct: 56 FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A + K + + L+EG+MDV++ +AG++NV Sbjct: 235 NSRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENV 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 285 VASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ F++L+ + + + + + I Sbjct: 340 NKMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + R ++ + + +Q L + Sbjct: 400 SPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQT 457 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 458 GKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE------- 509 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + +++R E +I ++ + ++A + R L +Q Sbjct: 510 ------ITSYDLSQESDKVNRTYYIILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ 562 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 563 ----SQLIRQSSNQGDEEGALAALENLIAQKRNME 593 >gi|282859201|ref|ZP_06268323.1| DNA primase [Prevotella bivia JCVIHMP010] gi|282588020|gb|EFB93203.1| DNA primase [Prevotella bivia JCVIHMP010] Length = 669 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 156/693 (22%), Positives = 284/693 (40%), Gaps = 82/693 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + ++ I +++ ++ + TN Y CPFHD+ TPSF + KG Y Sbjct: 2 IDKQTVDKIIDATNIVDVVSDFISLRKAGTN-----YKGLCPFHDDSTPSFSVSPIKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CFSC G+ + F+ ++ E+++ L + + + E+K + ++ + Sbjct: 57 KCFSCGAAGNAVKFVMQYEQMTYWEALKWLGKKYNIEVKEREMTSEEKLQASERESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A+++F + L D R Y RG I+ F+LG+ R S + + G+ Sbjct: 117 NEWASNYFQNILATNPDGRAIGLQYFRSRGFRDDIIKKFQLGFCLSPRDSFAKAALEAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ GL + DRF R++FP S G+V AFGGR L KG KY+N Sbjct: 177 KKEFLLKTGLC-FERQTGELVDRFNGRVMFPWISVSGKVTAFGGRLLDSRTKGVMQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY F A + K + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSEIYHKERELYGIFQAKKAIAKY----------DLVYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ YQ+RLL + + IVL +DGD G AA + D++L G V +LL Sbjct: 286 ANSGTALSVYQIRLLHRFTSNIVLLYDGDAAGQHAALRGTDMLLSE---GMNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F + Y K I ++ + + +R+E + I+ I Sbjct: 343 GKDPDEFAKMYSAEDLVKYIEDNQTDFIVFKINLLLKGVTDPI-KRSEAINSIVESISVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK------------------------ 451 KD LR Y R Q I + + + + Sbjct: 402 KDPILRDTYLHECMARTGMAEQTLIAQMNRFIYNGREREKREAENQRTRENHLHNADTNL 461 Query: 452 ---KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-- 504 +N + ++ + S+ L+ + S E L+ +I + IL+ E Sbjct: 462 ASVENPNNSNESATKNPTINSNSQFSILNSQFSNVETWLIQAIIRYGERVILKNVKDEVS 521 Query: 505 -----------------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERG 545 L ++ + + ++ S + + L Sbjct: 522 GKLLNLNVAQYIAYDLGLDNLSFTHPLYNQILSEAVEHSTNEDFVAENYFIHHRDLHISE 581 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 L +D+ L EA + + + + ++R + ++ +E+++QI Q Sbjct: 582 VATAL-SVDKFQLSESLQLRQDEAY---LFENVKHLILDFRRNY-VEKRLKELKEQIKQA 636 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + K + + + ++ + Q + +I Sbjct: 637 VSNEGKIKALVELQKMQQLRNILAQKLGNDIII 669 >gi|319944404|ref|ZP_08018678.1| DNA primase [Lautropia mirabilis ATCC 51599] gi|319742365|gb|EFV94778.1| DNA primase [Lautropia mirabilis ATCC 51599] Length = 687 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 166/495 (33%), Positives = 239/495 (48%), Gaps = 34/495 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI++LL + + +++G+ V + N Y CPFH+EKTPSF + +K FY Sbjct: 2 IPQSFIQELLTRVDVVDVVGKAVKLRKAGAN-----YQGLCPFHNEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQTDLI 118 +CF C G +SFL G F+E+V LA G+ +P + +K Q L Sbjct: 57 HCFGCGAHGSAISFLMEHHGLGFVEAVHELARDVGLTVPEDHSREGAEAARKASQQLALS 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++ A ++ LK YL ERG+ F LGYAP +L L + Sbjct: 117 QWLDQAARYYRSRLKETPAA--ISYLKERGVTGEIARHFGLGYAPAGWRNLEGVL--PDY 172 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + E + AGL+I YDRFR R++FPIR+ RGQVI FGGR L +GE KYLNSPE Sbjct: 173 AAEDAVRAGLVI-AGEDGKRYDRFRERIMFPIRNPRGQVIGFGGRVLGQGEP-KYLNSPE 230 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 LF KG LY F A ++ S R +++VEGYMDV+ L Q G V++L Sbjct: 231 GPLFSKGHELYGLFEAREGIRTSGR----------VLVVEGYMDVVMLHQHGCHYAVATL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T L L +L+ R+V FDGD G RAA++A++ L L +++F+ L D Sbjct: 281 GTATTAMHLGKLLRLADRVVFSFDGDAAGRRAAWRALENALPLLSDTKQLDFLFLPPEHD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDSF+R G AFE + ++LPL L K + TP+ RA ++ LK + + D Sbjct: 341 PDSFVRAEGLEAFEACVRDALPLSSFLLKELAQRADITTPEGRARMQAELKPLVQQMPDI 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT---------EHSGYGRYWKKNARHRDQKGPSQRLMQS 469 LR + RL ++ + R + S R S Sbjct: 401 ALRTQILVDMAGRLGLPTEELAAYCGLQMAHPVAHVREGGVRHGGRAAGGEARSMRPGAS 460 Query: 470 SLVKGKLSKKPSLRE 484 + L + + E Sbjct: 461 MMQGASLRDQAAPAE 475 >gi|288905581|ref|YP_003430803.1| DNA primase [Streptococcus gallolyticus UCN34] gi|288732307|emb|CBI13877.1| DNA primase [Streptococcus gallolyticus UCN34] Length = 602 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 259/634 (40%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V R N Y CPFH EKTPSF+ + K F Sbjct: 11 AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C GD FL SF+ESV +A AG+PL V K + LI + Sbjct: 66 FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGIPLQVDVQQTQTKPQNPNQILIDI 125 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ LK + + YL +RG+ I+ F +G +P+ L + L ++ + Sbjct: 126 HKDAAKFYNAVLKTTKEGQEAKNYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 E ++ +GL + + YD F+NR++FP+ GQV+AF GR + + + KY N Sbjct: 185 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDSGQVVAFSGRIWTKEDLENKQAKYKN 244 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + T LF+K LY+ A + K + L+EG+MDV++ +AG++N V Sbjct: 245 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 294 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + +++L +DGD+ G A K+++L+ + V + Sbjct: 295 ASMGTALTPDHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 349 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ A L+ + + + + + + I Sbjct: 350 QMDPDEFIQKNSPQALANLLENNRISSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 409 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R N + + QR+ L K Sbjct: 410 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQ--NRSNLQSEAVKQRVTVVELPISK 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E+ L+ L+ H +L E + +D ELQ L+ L E + Sbjct: 468 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFTFDTQELQALYDLLVQQ-GEVNSYDLA 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + RQ+ L + + + R R L +Q Sbjct: 526 QF-------------DDPTRQMYYRVLEENLPDEIANNEIEEIIDKRDRLLRERDLQKQS 572 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I + + G+ + + L + Sbjct: 573 K----LIRESSNLGDVDAALAALENLIAQKRNME 602 >gi|293365254|ref|ZP_06611971.1| DNA primase [Streptococcus oralis ATCC 35037] gi|291316704|gb|EFE57140.1| DNA primase [Streptococcus oralis ATCC 35037] Length = 591 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + + L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPHQASPHQALYDMHEE 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K F E+ Sbjct: 123 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + YD F R+IFP+ + +GQVIAF GR + ++ KY NS T Sbjct: 182 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDNQTAKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 291 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 346 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 406 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L ++ Sbjct: 462 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSAEGE------------- 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E ++ + + + LLS+ I+K Sbjct: 508 IGSEELSHQTPEVENAWYHVLSLDLPAEMLPQELVE-----VEATRNRALLSKDNLRIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTALEELQRLISQKRRME 591 >gi|312278802|gb|ADQ63459.1| DNA primase [Streptococcus thermophilus ND03] Length = 603 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G +PD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E + +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSGNNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD PG A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + D + EL++L+ L D Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L +++ E N+ +V QA+ Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|304382733|ref|ZP_07365224.1| DNA primase [Prevotella marshii DSM 16973] gi|304336128|gb|EFM02373.1| DNA primase [Prevotella marshii DSM 16973] Length = 643 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 151/657 (22%), Positives = 275/657 (41%), Gaps = 53/657 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I ++ I +++ ++V + N Y CPFH+EKTPSF+ + ++G Sbjct: 2 IDRATIDKIMDAANIVDVVSEFVSLRKSGAN-----YKGLCPFHNEKTPSFYVSPARGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CFSC G+ ++F+ ++ ES++ LA + + ++++ + + + Sbjct: 57 KCFSCGKGGNAVNFIMEHEQMTYPESLRWLANKYHIEIHERELSDDEKREQNERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +FH L N D R Y RG I F+LG+ + R ++ + KG+ Sbjct: 117 NEWAASYFHDILLNNVDGRAIGMQYFRSRGFRDDIINRFQLGFCLNDRSAMAKTALSKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 E+ +++ GL D+ DRF R IFP G+++AFGGR L KG + KY+N Sbjct: 177 QEDFLLKTGLCYRRDDG-QLIDRFAGRAIFPWIGLSGKILAFGGRVLDARTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY F A + K R + +VEGY DV+S+ Q G+QNVV Sbjct: 236 SPDSDIYHKERELYGIFQAKKAIAKEDR----------VYMVEGYTDVISMHQCGLQNVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+R+L + + I L +DGD G+ AA + D+ L G V +LL Sbjct: 286 ANSGTALSLHQIRMLHRFTSNITLLYDGDAAGIHAAMRGTDM---LLSEGMNVKILLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDSF + +F++ I + + +K + P +R+E + + I Sbjct: 343 GEDPDSFAQRNTAQSFKQYIEDHQTDF-IEFKTHLLLQGVTDPVKRSEAISSIVKSVAVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG- 474 D +R Y R + I+ + Y + + L++ Sbjct: 402 HDHVVRATYIHDCAMRFNIKEETLISTMNRYIHSTIEEKEKTRNREQHANTTPQLLIEVD 461 Query: 475 KLSKKPSLREAALLLTLINHPA-ILQEQYQEL-------------------ADIRYDNNE 514 K ++ E L+ +I H I+ + ++ + N Sbjct: 462 KSQRQTREVEQMLIQMVIRHGEKIIFRNIETEDGGSIDLSVAQYIDYDLSSDNLAFQNPI 521 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++ + + + + + + Sbjct: 522 YNRILREAVEGCKHADFTALSYFTRHPDIEVNQTACNLGMEPFQLSESRQIQQDET--RL 579 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 R+ Q + Y+R + +Q +++QI ++EK A L+ ++ + + Sbjct: 580 REQVQHLILDYRRDY-IEKQLNALQQQI--TLHANDSEKMATLLPEYTQLQKMRNLL 633 >gi|307703794|ref|ZP_07640735.1| DNA primase [Streptococcus oralis ATCC 35037] gi|307622629|gb|EFO01625.1| DNA primase [Streptococcus oralis ATCC 35037] Length = 586 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 145/629 (23%), Positives = 265/629 (42%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G SF+E+VQ L G+ L + + L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVSFMEAVQLLGERVGIQLAMPVQSRPHQASPHQALYDMHEE 117 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L K F E+ Sbjct: 118 AARFYHAILMTTKMGEEARAYLYKRGLTDDVLKHFQIGLAPAERTYLYQRLADK-FEEKD 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + YD F R+IFP+ + +GQVIAF GR + ++ KY NS T Sbjct: 177 LLDSGLFYLS-DGNQFYDTFFGRIIFPLTNDKGQVIAFSGRIWQETDNQTAKYKNSRSTA 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K + + L+EG+MDV++ +AG++N V+S+GT Sbjct: 236 IFNKSYELYHLDKAKKGTGKI----------TELYLMEGFMDVIAAYRAGIENAVASMGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL++ + L + + +IVL +DGD G A KA++ + V V + DPD Sbjct: 286 ALSKEHVDHLKRFTKKIVLSYDGDKAGQAATAKALEEL-----KDFSVEVVRVPDAMDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ ++ + + + + + + E + I K Sbjct: 341 EYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEKSITA 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 401 QNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQLTAV 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL + +P +L + + D +D E Q L+ L ++ Sbjct: 457 MRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSAEGE------------- 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +++ E ++ + + + LLS+ I+K Sbjct: 503 IGSEELSHQTPEVENAWYHVLSLDLPAEMLPQELVE-----VEATRNRALLSKDNLRIKK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 558 KVQEASHVGDTDTALEELQRLISQKRRME 586 >gi|218128549|ref|ZP_03457353.1| hypothetical protein BACEGG_00119 [Bacteroides eggerthii DSM 20697] gi|217989273|gb|EEC55587.1| hypothetical protein BACEGG_00119 [Bacteroides eggerthii DSM 20697] Length = 697 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 163/699 (23%), Positives = 299/699 (42%), Gaps = 96/699 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQATIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLVQGERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F L+N D R Y RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NQFARDYFQDILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +I+ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F++ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG-----------RYWKKNARHRDQKGPSQ 464 + +R Y + L+ + ++E + ++NA + P+ Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRNAVRSAEGAPNT 462 Query: 465 RLMQSSLV-------------------------------------KGKLSKKPSLREAAL 487 ++ S +GK ++ E + Sbjct: 463 PKVEGSNPATPTTTNGTALPTGEAAGYDTNAPFPPEDNYISFIPQEGKEGQEFYKYERLI 522 Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528 L ++ + +++ +L ++ + N +++ + + Sbjct: 523 LQMIVRYGEKIMCNATNDEGQEVPISVIEYVINDLKEDELSFHNPLHRQILTEAAVHIHD 582 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586 + + E +L +L + + ++ + D + Y+ AL + Sbjct: 583 EGFTAERYFLAH-PEAAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ ++S + + + + EK ++ E+ Sbjct: 642 KYAIVSEELKHMMSALQDPAVANNEEKCNAIMKRYSEMR 680 >gi|327402254|ref|YP_004343092.1| DNA primase [Fluviicola taffensis DSM 16823] gi|327317762|gb|AEA42254.1| DNA primase [Fluviicola taffensis DSM 16823] Length = 660 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 151/665 (22%), Positives = 280/665 (42%), Gaps = 62/665 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I +++ I +IG++V + +N PF DEK+PSF + +K Sbjct: 3 RIPPHIIDEIMQTSRIEEVIGEFVSLKKSGSNL-----KGLSPFVDEKSPSFMVSPAKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLI 118 + CFS G +SFL S+ E+++ LA G+ +P P+ ++ + L Sbjct: 58 FKCFSSGKGGTVVSFLMEKEHFSYPEALKWLADKYGIQVPEDKPQTAEEMAAITERESLY 117 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + E A + F H++ + + Y +ERG I+ F+LGY +S + +K Sbjct: 118 IINEFAKEHFMHNMHETNEGQNIGLSYFEERGFRKDIIQKFQLGYCLNSGDDFTKAALKK 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLN 235 G+ +E + GL S+D FR R++FPI S G+V+ FGGRTL + V KY N Sbjct: 178 GYKKEYLESVGLTR--TKEERSFDFFRGRVMFPIHSISGRVLGFGGRTLITDKKVAKYFN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+I+++K + LY + A + K L EGY DV+S+ QAGV N V Sbjct: 236 SPESIIYNKSEILYGLYFAKGDIIKY----------DNCFLCEGYTDVISMHQAGVPNSV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GT+LT+ Q+RL+ + + I + +DGD G++A+++ IDL L G V VL Sbjct: 286 ASSGTSLTKEQIRLIKRYTQNITILYDGDAAGIKASFRGIDL---ILEEGMNVKVVLFPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDS+ + T I + N P ++A++ + + I+ I Sbjct: 343 GDDPDSYSKKVSTTELMDFIKANTQDFVSFKTSLLLAEGNNDPLQKAQIIRDVVHSISLI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW-------KKNARHRDQKGPSQRLMQ 468 DQ R ++ I I E + + + A++ Sbjct: 403 PDQITRSVFTTEIARVFGFDESIVINELNKLRKNNIARDLEEPQIAQNPAFTDTFTTPTP 462 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHP--------------------AILQEQYQELADI 508 S ++ ++ E L+ L+ + ++ + + EL+ Sbjct: 463 QSTTAQEVKNPYAIEEFELIRILVKYGIFAITTDHIDEHGVSHPVEVSVAELVHHELSKD 522 Query: 509 R--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA- 565 + Q+++ + + + + + +L+ +++ + Sbjct: 523 ELIFQYPIYQEIYQQIVEGLSSKTLYKISFWLRH-EKPEVVQLITEIETDQYELSPKWLS 581 Query: 566 ----TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 T + ++ + +K+ R + ++ E+I+K + ++ E+ L+S Sbjct: 582 KYNVDTNREVDKLKATVMNGIYAFKKLR-IMQRIEQIQKDLNELAENITDEQLQDLLSEQ 640 Query: 622 HEVHI 626 + Sbjct: 641 IVLER 645 >gi|18310990|ref|NP_562924.1| DNA primase [Clostridium perfringens str. 13] gi|18145672|dbj|BAB81714.1| DNA primase [Clostridium perfringens str. 13] Length = 595 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L D + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEDDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVRDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|320530861|ref|ZP_08031898.1| DNA primase [Selenomonas artemidis F0399] gi|320136895|gb|EFW28840.1| DNA primase [Selenomonas artemidis F0399] Length = 594 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 155/636 (24%), Positives = 265/636 (41%), Gaps = 47/636 (7%) Query: 1 MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P F++ + I ++ YV R+ G YW CCPFH EKTPSF + Sbjct: 1 MKDPRMEAFVQQVRAATDILAVVQSYVPLRRKG-----GRYWGCCPFHSEKTPSFSVVPA 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116 +GF+YCF CH GD F+S + + E+++R A G+P+P ++ +++ D Sbjct: 56 EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPVPERKRDAREEARLRALDD 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L R+ +A DFFH+ L + YL RG+ I + +G+AP + L + ++ Sbjct: 116 LRRVNALARDFFHNCLTMTRYGEPGKAYLAGRGMTEETIARWGIGFAPGAWSKLADAFQK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G E+ ++EAGL + S YDRFRNR++ PI RG+++ FGGR L + KYLN Sbjct: 176 RGIPEKLLLEAGLCSARERSGGIYDRFRNRVMIPIADERGRIVGFGGRVL-GDGTPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET +F+K K L+ A + + ++VEGYMD +++ +AGV NVV Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------HEGYAVVVEGYMDAIAVAEAGVANVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA TE LL + +PRIV C+D D G A +A+ V + +LL Sbjct: 285 ATLGTAFTEDHAALLLRRAPRIVFCYDSDAAGQEATLRALAAVRGRAA---ELRVLLLPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD +IR +G AF LI +LP+ + R R + + + + + Sbjct: 342 GKDPDEYIRTHGADAFRALIDAALPVPEYRL-RHIAARMAPGAEGQRAALREMLPVLAEL 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D R Y + L R+ + V+ + Sbjct: 401 -DDVTRSAYVRRTAAELFLDEGVIGDALR---RFRMHGGTEEPAPRAQSGAVPQRPVRRE 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 LL + L E + + + + + Sbjct: 457 RGTAAERAGRELLAAVWRDVTTLAEIDAAVPLTEFPDAFFGDILRAAAEHTAAGGALDAD 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 I + A + +E + D + + + L+ + Sbjct: 517 FIAGLPAAA---------GAAISRALVEEGRSEESFQDALRTFHRM--------HLTARL 559 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ ++ +G+ L + + ++ ++ + Sbjct: 560 ALHTRRAEEMMQEGKQAYIDEL-NEVKKIQDELSAL 594 >gi|77406974|ref|ZP_00783991.1| DNA primase [Streptococcus agalactiae H36B] gi|77174415|gb|EAO77267.1| DNA primase [Streptococcus agalactiae H36B] Length = 624 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 153/634 (24%), Positives = 274/634 (43%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + F Sbjct: 33 AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 87 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 ++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ + Sbjct: 88 FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 147 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 148 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 206 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY N Sbjct: 207 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 266 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A + K + + L+EG+MDV++ +AG++NVV Sbjct: 267 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 316 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 317 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 371 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F++ F++L+ + + + + + + I Sbjct: 372 KMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 431 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + + L + + R ++ + + +Q L + Sbjct: 432 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASPSVQTSATVQ--LPQTG 489 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 490 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 540 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + +++R E +I ++ + ++A + R L +Q Sbjct: 541 -----ITSYDLSQESDKVNRTYYMILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ- 593 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 594 ---SQLIRQSSNQGDQEGALAALENLIAQKRNME 624 >gi|313891796|ref|ZP_07825401.1| DNA primase [Dialister microaerophilus UPII 345-E] gi|313119790|gb|EFR42977.1| DNA primase [Dialister microaerophilus UPII 345-E] Length = 596 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 161/635 (25%), Positives = 293/635 (46%), Gaps = 45/635 (7%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + +FI+ + +PI +IG YV ++ +WACCPFH EKTPSF + K Sbjct: 1 MKNFDNNFIQRIKDSLPIEQVIGAYVPLKKKGR-----SFWACCPFHQEKTPSFSVSPDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDL 117 GFY+CF C+ GD +SF+ + +F E++++LA IA + +P + + +KK ++ + Sbjct: 56 GFYHCFGCNESGDIVSFVEKMDNITFPEAIEKLAEIARIEIPQKEMTYEEKKKAELSKQI 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + E+A+ +FH+ L K K + Y +R + I+ FKLG+AP + L K Sbjct: 116 YDVTELASIYFHNCLTKTDIGKEGYEYFLKRHLSDEIIKKFKLGFAPPEWHRLYSDFTSK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +I++ + G + YD FRNR +FPI + +G+ +AFGGR + KYLNS Sbjct: 176 KKISPEILQIA-GLVGYKNGKHYDIFRNRCMFPILNLKGKTVAFGGRVM-DDSLPKYLNS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+++F+K + L+ + AL ++ I+VEGYMD +SL G+ NVV+ Sbjct: 234 PESVIFNKRRLLFALYQALPEIR----------EKRQAIMVEGYMDAISLHAHGITNVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 SLGTA T Q RLL + + ++ +D D G A +A+++ G ++ V L G Sbjct: 284 SLGTAFTIEQARLLKRYADELIFNYDMDAAGQNATKRALEIAG---NVGLKLRVVRLGDG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPD FI +G+ A+ + + ++ P D L+ + NT + + ++ + + + Sbjct: 341 KDPDEFINAHGREAYLESVAQAQPATDYLFSAALKRYDSNTLEGQQKILADMFDVLLAKG 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + + R+Q +E Y R KKN+ + S+++ Sbjct: 401 NSFYFNSFIVKMARRMQMDEGLIRSEALRYAR--KKNSNVFISQKQSEKIKSEDYETKYN 458 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K+ L E + + + E ++ L + ++ ++L+ + E E Sbjct: 459 MKRQKLLEEGFFRYCLFNNKL-PEGWELLKKYEFADDFHKELFR-ILEKLSETNITEKET 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 ++L R + L +L G + L R+ Sbjct: 517 --EKLLPREYVPRLAELLMNSNSVGNLPMEEYIRP--------------LKKVYLQREYR 560 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +++A++ + + +K I ++ +I + Sbjct: 561 VHTQRVAEL-LETDPQKAREEQLICIKLSEEIRNL 594 >gi|225011598|ref|ZP_03702036.1| DNA primase [Flavobacteria bacterium MS024-2A] gi|225004101|gb|EEG42073.1| DNA primase [Flavobacteria bacterium MS024-2A] Length = 654 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 161/667 (24%), Positives = 263/667 (39%), Gaps = 59/667 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I + + +IG +V + +N + PF E+TPSF + K + Sbjct: 2 ITRNTIDQVYETARVEEVIGDFVVLKKSGSN-----FKGLSPFSQERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KEK + L + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIRFLAKRYNIEIEETEQSDEEKEKANTRESLYLI 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D F L + + Y ERG +I F LGYA + R + + G+ Sbjct: 117 NQFAQDSFAQDLWESSEGMAIGLSYFRERGFTDESIRFFSLGYAAEQRDHFYKKATKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSP 237 +E + E GL+I N DRFR R+IFPIRS G+V FGGR LS ++ KYLNSP Sbjct: 177 AENLLEETGLVIK--NERGFVDRFRGRVIFPIRSMAGRVQGFGGRILSATAKTAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K LVEGY DV+ + Q GV+NVVSS Sbjct: 235 ESDVYHKSMVLYGMYEAKKAIAK----------EDVCYLVEGYTDVIQMYQQGVENVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ IV+ FDGD GLRAA + IDL L G V GE Sbjct: 285 SGTALTSEQIRLIRRLTSNIVVLFDGDAAGLRAAIRGIDL---ILEQGMNVKVCTFPVGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + ++ + + N P +++ L I+ I D Sbjct: 342 DPDSFARSHTLEEIKEYLKNEAKDFIQFKTDLLLQEADNDPVKKSNTVRELVQSISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKL 476 + Y + + + K R + ++ ++Q + K Sbjct: 402 PIKQEIYIKQCASTMDVSEAVLFNALAQEKSKKKVPVRSINTPTVGAETVIQKTPSKLGH 461 Query: 477 SKKPSLREAALLLTLINH-------PAIL-----------------QEQYQEL------A 506 E ++ L+ + + + ++++ Sbjct: 462 VNPILSLERQIISILLQYGSQEAAFDELFISADEEGNLKEESKTVESKVHEKIFLDLQQD 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 ++ E Q L+ L F + PE+I Q+ L L Sbjct: 522 EVELIQPEFQILYKQLIEHFQMEGDVKPEKIIQQEDPHLGQILTDILFADEAYQLHDWEK 581 Query: 567 TEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + D + Q + L R L+ ++ + + A E + + Sbjct: 582 KNIFVKDRKSAVGQLVSETILTFRRYLIDQKIQSLMDAAKDPDATEEDKLFLEDVIQYQN 641 Query: 624 VHIQIHQ 630 + + + Sbjct: 642 LKKLLSR 648 >gi|54295202|ref|YP_127617.1| DNA primase [Legionella pneumophila str. Lens] gi|53755034|emb|CAH16522.1| DNA primase [Legionella pneumophila str. Lens] Length = 578 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 160/628 (25%), Positives = 270/628 (42%), Gaps = 54/628 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EKTPSF+ K FY Sbjct: 5 IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ L F ++V+ LA G+ +P + K + L L+ Sbjct: 60 HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ LK + YL RG+ + + LGYAP+ ++L + ++ + Sbjct: 118 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKTFPNNQRE 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G+LI D YDR+RNR++FPI G+VI FGGR L K + KYLNSPET+LF Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRLLDKDQKPKYLNSPETVLF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ + II+VEGYMDV++L Q G+ NVV++LGTA Sbjct: 233 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + ++LL K + ++ CFDGD G +AA++A++ L HL G F+ L DPDS Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F +L+ ++ PL + +++ + + P + +L +K + + + + Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL + +T K + + P Sbjct: 403 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ P I Q++ + E L L + + + Sbjct: 443 --RIAIALLLQKPEIYPAAIQQINPDLLNGQEHHILLK-LLQRLKDNPNANTATLIEYWR 499 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E + +L ++ + + L ++ E+ K+ Sbjct: 500 NTRYFESIIKLAAW---------DHNVPEPELINEFIDTVLLLQKQSNREALIEQYIKKS 550 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q E + + +I + Sbjct: 551 QQKGLTKEEQIILQNLIKERHAQAEIEK 578 >gi|323340799|ref|ZP_08081051.1| DNA primase [Lactobacillus ruminis ATCC 25644] gi|323091922|gb|EFZ34542.1| DNA primase [Lactobacillus ruminis ATCC 25644] Length = 618 Score = 332 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 156/638 (24%), Positives = 277/638 (43%), Gaps = 42/638 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + I +++G +V N + CPFH EKTPSF N+ K F+ Sbjct: 11 IPEKTIDMVRSNADILDVVGNFVQMRHAGKN-----WVGLCPFHAEKTPSFSINEQKQFF 65 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI------QT 115 YCFSC G+ F+ L SFIE+V R+A + + + P P+ + + + Sbjct: 66 YCFSCGRGGNVFKFIMELEDLSFIEAVYRVAELENIEIDPRYSPENQARFQKGFESSEIG 125 Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L L + A D +H+ L ++ YL +RG+ IE F LG+AP S+ L+ + Sbjct: 126 QLKNLYKTAADVYHYMLTTAEIGEQALDYLHQRGLTDDLIEEFGLGFAP-SQDFLKTYFE 184 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 G + ++ L + DRF +R++FPIR++ GQ IAF GR L K + KY Sbjct: 185 THGIGDYQLFRKSGLFTEHGDGSLVDRFHSRVMFPIRNASGQTIAFSGRLLIKDDKSPKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET+LF K K L+NF A + +++ + L EG+MDVL+ ++GV+N Sbjct: 245 LNSPETLLFEKSKVLFNFDKAKSVIRRD----------GEVYLFEGFMDVLAAYRSGVKN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GT+LT+ Q+ + +++ ++++C+DGD PG A +A+DL V V L Sbjct: 295 GIASMGTSLTDDQIYQIEQITKKVLVCYDGDQPGQAATKRALDLFEDSSKIECEV--VNL 352 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLV-DMLWKRETENRSFNTPDERAELEIHLKNCI 412 DPD ++R +G +F+K++ ++ V + + E ++ T + + Sbjct: 353 PEKLDPDEYVRKHGTESFKKIVHDNRETVLEFYMRYFKEGKNLGTESGQLAYITDVLGET 412 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + D + ++ + R + + + S++V Sbjct: 413 AKVSDSLQIQLTLGRLAKEFGIDKMSLESQLR-VLKQQLGTKNVRAESSLKKTGVDSNVV 471 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K K K E LL ++N ++ + + D ++ + + Q L+ + + E + Sbjct: 472 KEKEFSKIEKAERLLLHRILNDYSVYSKV-SSIEDFQFVHVDYQALYLLIEGYYSEHSEY 530 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + +L ++ E Q L + K L Sbjct: 531 DDAKFLDYAEDSKLQNVLISIEM------------EDYGDYDEQEVDDCLKVLKHDAPLE 578 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Q I Q+ Q + + K L ++ + Sbjct: 579 EQIARISTQLDQAKRQNDVNKITELTIKYIKMMQEKQA 616 >gi|307243247|ref|ZP_07525418.1| DNA primase [Peptostreptococcus stomatis DSM 17678] gi|306493375|gb|EFM65357.1| DNA primase [Peptostreptococcus stomatis DSM 17678] Length = 607 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 284/628 (45%), Gaps = 28/628 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I YV TN Y CPFH+EKTPSFH N +K Sbjct: 1 MNDMKDIIEEIKYRSDIADIISDYVKLKPAGTN-----YKGLCPFHNEKTPSFHVNTAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIR 119 Y CF C GD +SF+ + F+++V+ LA G+ + +D + + Sbjct: 56 IYRCFGCGEGGDVISFVMKVENLDFMDAVRLLADRCGIEIKNKIDQNTRLRLEKINKFHT 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ L + +++ YL +RG+D I+ F LGYAPDS SL+ +L KG++ Sbjct: 116 IHIEAARFYYSKLVDGQNQAF-NYLKKRGLDLKTIKNFGLGYAPDSWDSLKLYLTSKGYT 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 EE++ E+GLL S +D+FRNR++FPI +G VI FGGR + G+ KYLNSP++ Sbjct: 175 EEELFESGLLSKSSKSDRFFDKFRNRVMFPIFDYKGNVIGFGGRVMDNGQP-KYLNSPDS 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F+K NLY A +L + +ILVEGYMD++SL Q G++N V++LG Sbjct: 234 EIFNKRYNLYGLNFARKHL----------GNQKTLILVEGYMDLISLYQFGIKNTVATLG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT+ Q L+ + + +VL +D D G+ A+ +AI++ G V + L +DP Sbjct: 284 TALTDEQAGLIKRYADILVLSYDSDQAGINASMRAIEI---LEKQGISVRILDLGDSKDP 340 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D FIR +G I ++ ++N + + + IK Sbjct: 341 DEFIREHGMAKMYDRIENAIEATRFRLNVLSKNYKLDDRKDSMVYLREAVKILKDIKSPI 400 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + YY + + E +G W+K + +R ++ + + Sbjct: 401 EQDYYINILSQMTATNAEIIRNEMNGKKVPWQKKSGNRSSNVDNRHFNFKKPKEVEEPS- 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 S E ++ ++ + +L + + +N + ++S + + + Sbjct: 460 -SFVEMNIIAAIMLSSKAREIVRYKLDEDDFSDNNSKIIFSKVLKLDEKGIIKNEDIYDD 518 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R+ L K V + + + + L KR + L +++ I Sbjct: 519 RISLDYLNRLSKLNLSGVDLNDVLEVDKLIFNLLEKNRQVKIDDLLKRQKKLENRRKTI- 577 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 +K E ++ I E+ + Sbjct: 578 ----DDNSKEAEEVDLEIMKIALEIVAE 601 >gi|194335846|ref|YP_002017640.1| DNA primase [Pelodictyon phaeoclathratiforme BU-1] gi|194308323|gb|ACF43023.1| DNA primase [Pelodictyon phaeoclathratiforme BU-1] Length = 631 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 162/642 (25%), Positives = 275/642 (42%), Gaps = 42/642 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + ++ I +I Y+ N Y A PF EKTPSF + K + Sbjct: 2 IPPAIVDEVRQAADIVEIISDYLTLQPAGHN-----YKALSPFTREKTPSFVVSPDKQLF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFS G+ +F+ + SF E+V+ +A +G+ + K E+K + L + Sbjct: 57 KCFSSGKGGNVFNFVMEVEKLSFPEAVELVARRSGMDISRFTEKKEQKSAHEESLTETLR 116 Query: 123 VATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF +L++ K Y ++RG+ I+ F LGYAPD+ L ++ G ++ Sbjct: 117 WAAKFFRGTLESDAGKLGSIYLAEKRGLSEKTIKTFGLGYAPDAWDHLFTAAKRAGIPQK 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETI 240 +++ GL+ + +D FR+R+IFPI S GQV+ FGGRTL ++ KYLNS E+ Sbjct: 177 HLLDLGLISANKQGNSWFDTFRHRVIFPIFSVGGQVVGFGGRTLESDPKAPKYLNSQESK 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY A N +++ +LVEGYMDVL+L QAG+ N V+S GT Sbjct: 237 LFEKSKLLYGLHAAKNEIRRM----------ENALLVEGYMDVLALHQAGMTNAVASCGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT YQ ++L + + R++ +D D G ++ ID+ L ++L G+DPD Sbjct: 287 SLTRYQAKILRRYTSRVLFMYDADRAGQKSMMSGIDI---LLAENLTPFVIILPEGDDPD 343 Query: 361 SFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 SF+ G+ F + E + D + E+ F PD ++ + + I I D+ Sbjct: 344 SFVSREGREKFLRFTEEKMLSFQDFQIRFFRESGDFAEPDLKSRAIKVMTHTIAQIPDRI 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y Q + +L K + K S Q GK + K Sbjct: 404 RRELYLQELSKKLGLTLSALQELLE-------KEEGATENKRLSSENRQELPPPGKPAPK 456 Query: 480 PSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-----QK 530 S+ E L L+ A+L+ + ++E Q+++ L + + + Sbjct: 457 ISVLEKTFLKALLESTGYGNAVLEFAASHEEMLELPHHEAQEIFIHLIRRYHDIADRPDE 516 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--F 588 +L +L + + W + + + ++ L +K Sbjct: 517 RINIASEISSFGTPESRDLASELLIEQPISKKWLEQSNVHADNAKRCLAMFLDAFKNLIL 576 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L QK + + I + + ++ L+ + +I + Sbjct: 577 EPLLCQKNRLTEDIR---LESDTDREIELLREKIILDKKIRK 615 >gi|116628188|ref|YP_820807.1| DNA primase [Streptococcus thermophilus LMD-9] gi|116101465|gb|ABJ66611.1| DNA primase [Streptococcus thermophilus LMD-9] Length = 603 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-IQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQRQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G +PD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E + +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD PG A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + D + EL++L+ L D Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L +++ E N+ +V QA+ Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|284990208|ref|YP_003408762.1| DNA primase [Geodermatophilus obscurus DSM 43160] gi|284063453|gb|ADB74391.1| DNA primase [Geodermatophilus obscurus DSM 43160] Length = 628 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 135/640 (21%), Positives = 229/640 (35%), Gaps = 45/640 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I ++G+++ R G CPFHDEK+PSFH S+ Sbjct: 6 RIRAADIALVRERSKIDEIVGEHLQLKRAG----GGSLKGLCPFHDEKSPSFHVTPSRNL 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-------IEKKEKIQ 114 ++CF C V GD +SF+ + SF E+V+ LA A + L D + + Sbjct: 62 FHCFGCGVGGDVISFIQQIDHLSFTEAVELLAGRANLELHYEDDGGRPTGAPDRSQAGQR 121 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L+ A F+ L + +L +RG D F G+AP L HLR Sbjct: 122 ARLVAANTAAAAFYAEQLGSPEAAPARQFLADRGFDRQVALDFGCGFAPGGWDGLTRHLR 181 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 GF++++++ AGL + + T DRF RL++PIR G VI FG R L + KY Sbjct: 182 GSGFTQQELVTAGLAKES-SRGTLIDRFHRRLVWPIRDITGDVIGFGARKLMDDDPGPKY 240 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LN+PET L+ K LY A + + S ++VEGY DV++ AGV Sbjct: 241 LNTPETPLYKKSSVLYGIDRAKRDIAR----------RSQAVVVEGYTDVMACHLAGVTT 290 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV----N 349 V+S GTA + +L +L + R Sbjct: 291 AVASCGTAFGPEHIGVLRRLLMDQDEFRGEVIYTFDGDAAGQAAAMKTFAEDQRFVGQTF 350 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + G DP + +G A L+ PL+ + + + +T + R Sbjct: 351 VAVEPDGRDPCELRQAHGDAAVRDLVGRRTPLIAFVLRTTLASYDLDTVEGRVAALEKTA 410 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + IKD LR Y++ + + + + E + R G + + Sbjct: 411 PLVAQIKDHALRPAYARQLAGMIGNTDESEVLE---------RVRRTTGDTGGPPQRGRP 461 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + E L + P + + + Y + + Sbjct: 462 RTPQKSPDEVAVEVEREALKVALQSPELAGPSFDAIPVEAYTDPDYAA-------VAAAV 514 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKR 587 + E+ R+ A L + E ++ + GY A+ Sbjct: 515 AAAGGAAATRVTGPAWLDEVAAHCTRESATALLTALAVEPVRSVGEADAGYVNAVLARLE 574 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R+ ++ ++ ++ ++ L + Q Sbjct: 575 EMHTVRRVAALKGRLQRMNPVEAGDEYMKAFGQLMALEQQ 614 >gi|305664553|ref|YP_003860840.1| putative DNA primase [Maribacter sp. HTCC2170] gi|88708570|gb|EAR00806.1| putative DNA primase [Maribacter sp. HTCC2170] Length = 659 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 152/659 (23%), Positives = 259/659 (39%), Gaps = 62/659 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V + +N + PF DE+TPSF + K + Sbjct: 2 ISKSTIDQVYETARLEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+K++ + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKYLAKKYNIEVEETERTDEQKQEANERESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A F L + + Y ERG I+ F LGY D KG+ Sbjct: 117 SEFAQSHFAQMLWESELGKAIGLTYFKERGYTDETIKKFGLGYCLDRWDGFTTAALDKGY 176 Query: 179 SEEKIIEAGLLI-----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232 + + GL I N + +DRF+ R++FPI S G+V+ FGGR L+ + K Sbjct: 177 KLNYLEKTGLTIVKEDPKNPNGSRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE+ ++HK K LY + A + K LVEGY DV+ Q G+ Sbjct: 237 YLNSPESEIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQFYQRGIH 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 NVVSS GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V Sbjct: 287 NVVSSSGTALTPEQIRLINRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVKVCT 343 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 GEDPDSF + + ++ + N P +RA+ + N I Sbjct: 344 FPEGEDPDSFAKNNELEDIINFLQQNSKDFIQFKASLLVEEASNDPIKRADTVRDIVNSI 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I D + Y Q + + G+ A + ++ + + Sbjct: 404 SKIPDTIKKEIYIQECAQIMNVSEAVLFNTLAQIGKKDIAEASKKAKQEQKAFDVVKNEP 463 Query: 473 KGKLSKKPSLREAALLLTLINH-----------------------PAILQ-EQYQEL--- 505 + E ++ L+ + P L+ + Y+++ Sbjct: 464 VPEKVDVQYELERKIIELLLLYGNKKEEFEDLVLKENEDGDLILEPESLEVKVYEKIYLD 523 Query: 506 ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 +I N + ++ L E++ F L + E+ L + + Sbjct: 524 LQDDEIELANQHFKSIYYKLIEQLNEKEDFAINTFIADLDQEMVTEISSILMEEEKYVLH 583 Query: 563 WSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + D G Q + L R L+ R+ E ++ + + +E ++ Sbjct: 584 NWESKDIYPKDKIIGVSQLVSETILTLRCFLIKRRMETLQNS-TEDNFEDNSETLEEIM 641 >gi|169343495|ref|ZP_02864494.1| DNA primase [Clostridium perfringens C str. JGS1495] gi|169298055|gb|EDS80145.1| DNA primase [Clostridium perfringens C str. JGS1495] Length = 595 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 167/636 (26%), Positives = 290/636 (45%), Gaps = 44/636 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFFRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + E + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKIINDSIEEIGF---NNLG 504 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + + L + L +NI + + Y + R L +++ + Sbjct: 505 KHVEAKCEDPKV--LKEWLEVKDLLILDHSSNIEVLVKDYINLI----RKYKLEQEQTTV 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 K++ + +++ L+ E+ ++ ++E Sbjct: 559 LKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|160945280|ref|ZP_02092506.1| hypothetical protein FAEPRAM212_02799 [Faecalibacterium prausnitzii M21/2] gi|158443011|gb|EDP20016.1| hypothetical protein FAEPRAM212_02799 [Faecalibacterium prausnitzii M21/2] Length = 591 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 141/583 (24%), Positives = 258/583 (44%), Gaps = 33/583 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++I++L I L+G YV R+ Y CPFH EKTPSF+ + Sbjct: 2 IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD +SF+ + S E+++ LA+ AG+P P D K + +++ ++ + + Sbjct: 57 YCFGCQAAGDAISFVKKINNISSGEAIKMLASRAGMPEPQEDDKTGR---LRSRVLSMNK 113 Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + ++ Y RG+D I F LGYAP+ +L ++LR KG+++ Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQYLRDKGYNQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ +GL + Y F R++ PI RG +IAFGGR + KY+NSPET+ Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVM-DDSKPKYVNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK + ++ A + +L EGYMDV+S+ QAG+ V + GT Sbjct: 232 VYHKSETVFAMQIAKRSASR------------RFVLCEGYMDVISMQQAGIDTAVCACGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+R++ + + ++L +D D+ G +A ++++L +V + + +DPD Sbjct: 280 ALTPGQVRIISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YG F+ L+ +D KR + + +R + + + Sbjct: 337 EYIKKYGPERFQALLDGVGNALDFRLKRLRDQYDLSQDAQRLQYVKEAVEMLAERSNPTE 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPSQRLMQSSLVKGK 475 + Y+ + + + + + R + G ++ G Sbjct: 397 QEVYAGRLAEETNISKTAILAQLGTAVKRAGGKYRREKNRELLRSGEMNQIKVPYSAGGS 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + + LL ++ P L+ Q+L ++ + ++L+ + + E Sbjct: 457 QALGIASAQQRLLAAILREPRYLELAKQQLTAEQFIQPQQKELYEAMLNCSREGVELSLT 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + E E L +L Q D + + +G Sbjct: 517 ALRAFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARGM 558 >gi|152963815|gb|ABS50235.1| DNA primase [Erwinia amylovora] Length = 389 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 140/391 (35%), Positives = 210/391 (53%), Gaps = 19/391 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDARVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CF C G+ + FL F+ES++ LA + G+ +P + + + L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDRLEFVESIEELATLYGLEVPYESGSGPSQLERHQRQSLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DFF SL YL +RG+ ++ F +G+AP + + Sbjct: 119 LMTGLRDFFQQSLTQGPSAGARDYLAQRGLSDEVVKHFSIGFAPAGWDNALKRFGSNPDD 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+AG+L+ ++ SYDRFR R++FPI RG+VI FGGR L KYLNSPET Sbjct: 179 RQSLIDAGMLV-TNDQGRSYDRFRERVMFPIHDKRGRVIGFGGRVL-GDGMPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + AL +++VEGYMDV++L Q GV V+SLG Sbjct: 237 EIFHKGRQLYGLYEALK----------NYPEPGKLLVVEGYMDVVALAQFGVDYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ T ++LL++ + ++ +DGD G AA++A++ L ++ G ++ F+ L GEDP Sbjct: 287 TSTTAEHIQLLFRSTDTVICYYDGDRAGREAAWRALETALPYMNDGRQLRFMFLPDGEDP 346 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390 D+ +R GK AFE + +++PL L+ Sbjct: 347 DTLVRKEGKEAFEARMEQAMPLSTFLFDTLM 377 >gi|55821466|ref|YP_139908.1| DNA primase [Streptococcus thermophilus LMG 18311] gi|55737451|gb|AAV61093.1| DNA primase [Streptococcus thermophilus LMG 18311] Length = 603 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 155/644 (24%), Positives = 262/644 (40%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKTLIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVSIDVPRQVQQQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G +PD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDELLKTFQIGLSPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E + +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSENNRIFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD PG A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKPGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DSMDPDEYLQKTSEKALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNARLTMRNQQMAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + D + EL++L+ L D Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTPELEELFQILKRD 517 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L +++ E N+ +V QA+ Sbjct: 518 G-------------QIDTVALSVLSQEVQTAYYQVLEEILPPETNLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|300727785|ref|ZP_07061167.1| putative DNA primase [Prevotella bryantii B14] gi|299774938|gb|EFI71548.1| putative DNA primase [Prevotella bryantii B14] Length = 658 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 157/664 (23%), Positives = 290/664 (43%), Gaps = 64/664 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ ++ I ++ ++V + N Y CPFHD+ TPSF+ + ++G Sbjct: 2 IDRSTVQKIMDATNIVEVVSEFVSLRKSGAN-----YKGLCPFHDDTTPSFYVSPARGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF+C G+ ++FL ++ ES++ LA + + + +++E + + + Sbjct: 57 HCFTCGKGGNAVNFLMEHEQMTYPESLRWLARKYHIEIQERELSEEEKRQENERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F + L + D Y RG I+ F+LG+ R L E Q+G+ Sbjct: 117 NEWAAKYFQNILHHDVDGLAVGMQYFRSRGFRDDIIQKFQLGFDLPERNKLPETAIQEGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 E +I+ GL + D+ DRF R +FP G+V+AFGGR L KG + KY+N Sbjct: 177 QREFLIKTGLCYERDHG-ELVDRFAGRAMFPWIGVSGKVVAFGGRVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY + A + K R + +VEGY DV+S+ Q+G++NVV Sbjct: 236 SPDSEIYHKERELYGIYQAKRAIAKEDR----------VYMVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL++YQ+ LL + + IVL +DGD G+ AA + D+ L G V +LL Sbjct: 286 ANSGTALSKYQIHLLHRFTSNIVLLYDGDAAGIHAALRGTDM---LLAEGMNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPDSF R + F + + E + + +K + + P +R+E + ++ I Sbjct: 343 GNDPDSFARSHTAEEFRQYVEEHQ-MDFIEFKTDVLLKGVTDPIKRSEAINSIVFSVSVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 DQ +R Y RL I+ + + R + +Q+ +Q+ ++ + Sbjct: 402 TDQIIRATYIHDCSVRLGIAEATLISTMNRFIREGQDEKIKEEQRQINQQSQETVELHSA 461 Query: 476 LSKKPSL----------------REAALLLTLINHPA----------------ILQEQYQ 503 ++K ++ E L+ L+ + + Q Sbjct: 462 ETQKTAMDTVLGFNQSTSSQASHVETMLVQMLVRYGDRVITIIAPDRSEISLPLAQYVGL 521 Query: 504 EL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +L +R+ ++ ++ + E+ + Q + L +L Sbjct: 522 DLGSDQLRFHDDRYNQILNEALQHVGEENFKSESYFLQH-PDLKISGLAAKLCVDKVQIS 580 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 S E +R + + L R + + + ++ QI Q++ +K ++ Sbjct: 581 -KSLKPEPTEEQIRNNVLRLV-LNFRCEFMENRLKNLKNQINQLSISDPDDKLLEVMKEY 638 Query: 622 HEVH 625 EV Sbjct: 639 KEVQ 642 >gi|257867641|ref|ZP_05647294.1| DNA primase [Enterococcus casseliflavus EC30] gi|257873970|ref|ZP_05653623.1| DNA primase [Enterococcus casseliflavus EC10] gi|257801724|gb|EEV30627.1| DNA primase [Enterococcus casseliflavus EC30] gi|257808134|gb|EEV36956.1| DNA primase [Enterococcus casseliflavus EC10] Length = 611 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 148/641 (23%), Positives = 277/641 (43%), Gaps = 42/641 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I D+ I +++GQYV + N Y+ CPFH+EK+PSF + K Sbjct: 3 RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ FL L G SF E+V ++A + +PL I + + LI Sbjct: 58 FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A + +HH L A + YL +RG+ IE F +G+AP+ R L + + Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEK 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232 E + GL + ++ + DRF R++FPIR+ +G+ I F GR L+ + K Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPETILF+K + L+NF A ++K + L EG+MDV++ QAG++ Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVIAAWQAGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N ++S+GT+LT Q+ + +++ ++LC+DGD G+ A + IDL+ +++ V Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGIEATNRGIDLL--QNNSRLKLSVVR 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + DPD ++R YG AF KL V + NR+ E+ + + Sbjct: 345 VPERMDPDDYLRKYGTEAFYKLAVHGKETVFAFKMDYHRANRNLANEKEQLDYVQVVLKE 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + + + Y + + + + + + ++ + Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQQPRQDAPPPAPTTNPMVFTPP 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + + LL L + + + I + ++ Q+L+ + +++ Sbjct: 465 TRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA--SGISFIHDRYQQLYLLFDAYMETEEH 522 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 F+ + L E +++ + + + Q + + + Sbjct: 523 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 570 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + + Q + KG + L + ++ ++ Q + Sbjct: 571 AEEINQKRIQQQEARQKGNQQLELELAIEIIDLTKRLKQAK 611 >gi|168204753|ref|ZP_02630758.1| DNA primase [Clostridium perfringens E str. JGS1987] gi|170663597|gb|EDT16280.1| DNA primase [Clostridium perfringens E str. JGS1987] Length = 595 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|166367226|ref|YP_001659499.1| DNA primase [Microcystis aeruginosa NIES-843] gi|166089599|dbj|BAG04307.1| DNA primase [Microcystis aeruginosa NIES-843] Length = 626 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 154/639 (24%), Positives = 281/639 (43%), Gaps = 40/639 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I I +LI + V +R +Y CPFH+EK+PSF + +K Sbjct: 5 RLHPDTIEEVKQRIDIVDLISERVVLKKRGR-----EYVGLCPFHEEKSPSFTVSPAKQM 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 YYCF C G+ + F + SF E V LA +P+ ++E++ ++ L Sbjct: 60 YYCFGCGAGGNGIKFFMEVGKQSFSEVVFDLARRYQIPIKTLAVEQRQELEQQLSLKEQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VA F+ H+L + ++ YL +R + I F+LGY+P+ +L + + Q Sbjct: 120 YEIMAVAVSFYQHALSQPQGEKALDYLKVQRQLTPETIATFQLGYSPEGWETLYRYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + + +AGL+ N + YD+FR+RL+ PI S+G+ IAFG RTL E KYLN Sbjct: 180 KRYPVALVEQAGLIKARQNGSGYYDQFRDRLMIPIFDSQGRAIAFGSRTL-GNEQPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGK L+ A + I+VEGY D ++L G+ NVV Sbjct: 239 SPDTPLFEKGKTLFALDRAKQAI----------IQQDLAIVVEGYFDAIALHATGISNVV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 + LGTAL++ Q++LL + S +I+ FD D G++A +AI+ + + G + Sbjct: 289 ACLGTALSQEQIKLLLRYSESKQIIFNFDADQAGIKATQRAIEEINSLVYSGQVNLKILN 348 Query: 353 LSRGEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L G+D D F+ R G ++ +LI +S +D + N++ ++ + + Sbjct: 349 LPDGKDADEFLKSRADGVNSYRELIEKSPFWIDWQISQMLVNKNLKQGLHFQQIANSMVS 408 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + D R +Y + L Q + + G S + + + Sbjct: 409 LLQKLIDGNQRTFYLDYCAEILAQKDATRLPYILKNLSK-----QVNKPLGKSPAIKRKN 463 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVE 528 ++ E LLL ++ + + L + ++ + + LW + E Sbjct: 464 ILDKSEKNGSETAEWLLLLIYLHRSEYREMILESLDEKDLIFNVPDYRWLWQVILEL--E 521 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + P ++ L + +R S T + + + A+ ++ Sbjct: 522 TQITNPRDLMSALQNHLLMITTDK-NRDFNSLFHLSEHTSQAVFQPEEQIKDAIIALEKI 580 Query: 589 RLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEV 624 L+ ++ E++ + + ++ ++ L E+ Sbjct: 581 SLMEYRRYCQEQLINALDSNQREFYQQEFYQTVNKLIEI 619 >gi|71906167|ref|YP_283754.1| DNA primase [Dechloromonas aromatica RCB] gi|71845788|gb|AAZ45284.1| DNA primase [Dechloromonas aromatica RCB] Length = 578 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 283/628 (45%), Gaps = 54/628 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + I +L+ YV + N Y ACCPFH+EK+PSF + +K FY Sbjct: 2 IPDSFIQDLLARVDIVDLVDGYVPLKKAGAN-----YAACCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 +CF C G +SF+ G F+++V+ LA AG+ +P + + K EK LI + Sbjct: 57 HCFGCGAHGTAISFVMEYQGLGFVDAVKDLATRAGMQVPESEGRSFKDEKPGQTRTLIEI 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ LK + Y +RG+ + +GYAPD +L+E ++ Sbjct: 117 MARAAAYYKDQLKKS--PHAIEYCKKRGLTGEIAARYGIGYAPDGWQNLQEVF--PDYNA 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ AGL+I+ + YDRFR+RL+ PI + +G++IAFGGR + +GE KYLNSPET Sbjct: 173 DELKIAGLVIENEAGRR-YDRFRDRLMIPIINPKGEIIAFGGRIIDQGEP-KYLNSPETP 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ L+ A L+ + I+ EGYMDV++L Q GV N V++LGT Sbjct: 231 LFEKGRELFGLPQARQALR----------ETDTAIVTEGYMDVIALAQNGVGNAVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T + L + RIV CFDGD+ G +AA++A++ L L R+ F+ L + DPD Sbjct: 281 ATTATHVTKLLRQVDRIVFCFDGDNAGRKAAWRALENSLEALADNKRLGFIFLPQEHDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S+IR +GK F++ + +++PL D L + + + + +A+L K + + L Sbjct: 341 SYIREFGKEQFDRQVTQAMPLSDFLLRELAQRCDLTSSEGKAQLIYEAKPLLLKLPTPLL 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + F + E + + A + ++ Sbjct: 401 RLQLVKRLAE--ASGFAQAEVERLCELKSYTPAAPPKAKRTAPSLT-------------- 444 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL +++ P + + L + L +L + ++ + ++ Sbjct: 445 ----RNLLRIVLHKPQLAAQLPIALLPDTPERAALTRLHQLV---TANRETSSYAGLREQ 497 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + ++ + E ++ R ++ + R E++ Sbjct: 498 LRGLPEESV---IENAASELLGLPFDEEGAEMEFRDTLEK-----LQEGGEKRAFAELQV 549 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI 628 + Q G + Sbjct: 550 KAQQFGVAGLSAAEKQAYIQFLTTKANR 577 >gi|322391829|ref|ZP_08065294.1| DNA primase [Streptococcus peroris ATCC 700780] gi|321145309|gb|EFX40705.1| DNA primase [Streptococcus peroris ATCC 700780] Length = 591 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 135/629 (21%), Positives = 259/629 (41%), Gaps = 48/629 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG+ + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKRVIEEIKNNTNIVEIIGEVISLQKSGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ +F ++V+ L G+ L + +L + + Sbjct: 63 CFGCGRSGDVFKFIEEYQQVTFADAVRILGERLGMHLETPVHNTAQHTSPHQNLYEMHDK 122 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ I+ F +G AP R S + +SE+ Sbjct: 123 AARFYHAILMTTKMGEEARNYLYKRGLTDDVIKHFMIGLAPVER-SYLYQRLAEDYSEKD 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 ++++GL + +D F NR++FP+ + +G+VIAF GR + +S KY NS T Sbjct: 182 LLDSGLFYLS-ETNQFFDTFHNRIMFPLCNDQGKVIAFSGRIWQETDSQTAKYKNSRATA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ K + I L+EG+MDV++ +AGV+N V+S+GT Sbjct: 241 IFNKSYELYHMERVKKGSGK----------APEIYLMEGFMDVIAAYRAGVENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT + L + + ++++ +DGD G A KA++ + V V + DPD Sbjct: 291 ALTAEHVEHLKRFTKKVIITYDGDKAGQAATVKALEEL-----TEVPVQIVQIPDAMDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ L+ + + + + + E + I Sbjct: 346 EYLQKNSPEELAYLLSNTRISPIEFYIHHYKPSNSENLQAQIEFIEKIAPLIVREPSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L + + R ++ + + P+ M S K Sbjct: 406 QNTYIHLLTDHLPSFDYQQVEHIINESRVRQRQEKVKQVANPTPITMSVS----KQLTAV 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA +L +I +P ++ Y+ D ++ E Q L+ L + Sbjct: 462 MRAEAHILYRMIENP-LVLNDYRLRNDFVFETPEFQTLYGLLID-------------NGS 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + ++++ +E + ++++ + + LL++Q +I+K Sbjct: 508 ISSEDLANQTREVENAWYQVLALDLPSEMSPEELKE-----VEESRNRALLNQQNLQIKK 562 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + + G+ + + L ++ Sbjct: 563 KVQEASHVGDTDTAIEELECLIAQKRRME 591 >gi|94272766|ref|ZP_01292180.1| DNA primase [delta proteobacterium MLMS-1] gi|93450021|gb|EAT01406.1| DNA primase [delta proteobacterium MLMS-1] Length = 599 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 163/628 (25%), Positives = 267/628 (42%), Gaps = 51/628 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R+ ++ + I+ +IG++V R N CPFH EKTPSF N +G ++C Sbjct: 18 RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122 F C GD SFL F E++++LAA +PL P+ ++ + + L + Sbjct: 73 FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132 Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180 A +H L + + YL +RG+ + IE F+LGYAP LR+ R+K Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L YDRFR R+IFPI G+V FGGR L +GE KYLN+ ET Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY + L+K + +LVEG D+L+L GV+ VV+ LGT Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QLR+L +VL FDGD GL+AA +A+ L L + G +L +G+DPD Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419 S+IR +G+ ++L+ E L + ++ R + + + L ++ + DQ Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR + +RL Q++ + ++R + + + + Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E + L H L + + L + S + PE + + Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R L+ L + + ++ Q L + + R+ E + Sbjct: 522 HTEGR-LKSLVSSL---------LIDGADFYPEEQQEASAQELISWLQRHRRRREAEALV 571 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++I G+ +K L+ + + Sbjct: 572 QEINAAHLAGDQQKVMELMLKKQTLQKE 599 >gi|282880134|ref|ZP_06288854.1| DNA primase [Prevotella timonensis CRIS 5C-B1] gi|281306007|gb|EFA98047.1| DNA primase [Prevotella timonensis CRIS 5C-B1] Length = 658 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 143/670 (21%), Positives = 290/670 (43%), Gaps = 64/670 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I +++G++V + N Y CPFH+EKTPSF + ++G Sbjct: 2 IDRVTVERIKDAANIVDVVGEFVTLRKSGAN-----YKGLCPFHNEKTPSFFVSPARGTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C G+ +SF+ ++ E+++ LA + + + +++ + + + Sbjct: 57 HCFGCGKGGNSVSFIMEHEQMTYPEALRWLARKYHIEIQEREMSDEERREQSERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++F L + D + Y RG I+ F+LGY +R++L + KG+ Sbjct: 117 NEWAANYFSDLLHHHPDGQAIGMQYFRSRGFRDDIIQKFQLGYDLPNRFALAQAALGKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +I+ G+ D DR+ R+IFP G+V+ FGGR L KG + KY+N Sbjct: 177 QKEFLIKTGICYQNDRGD-LIDRYAGRVIFPWIGLNGKVVGFGGRVLDARTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP + ++ K + LY + A + K ++ +VEGY DV+S+ Q G++NVV Sbjct: 236 SPASEIYQKDRELYGIYQAKKAIAK----------EDWVYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ +L + + I L +DGD G+ AA++ +D+ L G + +LL Sbjct: 286 ANSGTALSLHQIHILHRFTSNITLLYDGDAAGIHAAFRGMDM---LLSEGMNIKILLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD F R + + I + + +K + ++ P +R+E + I + Sbjct: 343 GEDPDGFARKHTAEDLKTYIEQHQTDF-IQFKTDLLVKNETDPYKRSEGINSIIKSIAVV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---QRLMQSSLV 472 +Q LR Y+Q R+ + I + Y R +++ +++ L Sbjct: 402 PNQVLRDTYAQDCARRIGMKEETLINTMNRYIRNYREEMSKEERRQIEALNTSKPTPQLP 461 Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE------------------LADIRYDN 512 + ++ S E L+ +I +L++ E ++ +D+ Sbjct: 462 TAQPMEQASQVEKMLVQLIIRKGEQLVLEQVEDENHQLFDLTVAQFIDYSLREDNLHFDH 521 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--------LDRQVRDAGLWS 564 ++ + E+ + + +L + + + + + Sbjct: 522 EISNRILTEAVEHSGEEGFVAESYFIHH-EDIEISKLATEMSTDRYQLIAEEKPTSDMKY 580 Query: 565 ATTEANIVDVRQGYQ-QALALYK--RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + ++ + + L R + + +++ +QI QV + E+ L++ Sbjct: 581 MDEAQLATEAQEALRNHTIHLLMDFRMDYVEQHLKDLMQQIGQV--SNDPERLQELVAEY 638 Query: 622 HEVHIQIHQI 631 ++ + + Sbjct: 639 KDMQQIRNAL 648 >gi|282882510|ref|ZP_06291131.1| DNA primase [Peptoniphilus lacrimalis 315-B] gi|281297652|gb|EFA90127.1| DNA primase [Peptoniphilus lacrimalis 315-B] Length = 600 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 284/633 (44%), Gaps = 48/633 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++++ + I LI QYV+ R N Y CPFH+EKTPSF + SKG + Sbjct: 5 IDDNLLEEIRDKVDIYELISQYVNLKRSGAN-----YIGLCPFHNEKTPSFSLSPSKGIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 CF C GD +SF+ G F E+++ LA + L K ++ + + Sbjct: 60 KCFGCGEGGDVISFVMKREGLGFREAIKFLADKYNIELRQAHYSKKDKELKDKAQRFYEI 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FF+++LKN+ K YL +R I I + LG+A DS +L+ HL G+ E Sbjct: 120 NRQAALFFYNNLKNS--KLGMNYLRKREISPAVINKYGLGFANDSWDNLKNHLLSLGYKE 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+++E LL +YDRFRNR++FPI ++G+VIAFGGR L E KYLNS E + Sbjct: 178 EELVEINLLSSSKG--KTYDRFRNRIMFPIIDTKGRVIAFGGRVL-GDEKPKYLNSSENL 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NL+N + IILVEGYMDV+SL +G+ V+SLGT Sbjct: 235 IFHKGSNLFNLNLISKEASR-----------DKIILVEGYMDVISLYNSGINYSVASLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT+ Q L+ + + I +C+DGD G+ A +AID++L G + L+ G DPD Sbjct: 284 SLTQAQAGLIKRYAKDIYICYDGDSAGINATVRAIDIMLSE---GISPKIISLAEGLDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YGK +FE + +D E + ++ D ++ + ++ IK+ Sbjct: 341 EYIKKYGKISFEGQVANGKSFLDFKIDNLKEKFNLSSSDGLSKFTMEAGKILSSIKNPIE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + S + K + +K KGKL Sbjct: 401 RDVYMRNFCKTYGISTISLNSYISLINKNRPKKKFDKPKKI--------IKPKGKLQSGN 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ + ++ + + E++ ++ L + + ++ + Sbjct: 453 IKAQKGLIAYCLAGHDFYDYIKSKVELTLFSSVEIRIIFEELENYYDKKIKKDDF--FKD 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L +G L + L E N L + L ++KE + Sbjct: 511 LINKG----LVSSETYKEIISLIVDEPEGNK------IISDYLLTLKRSWLLQEKENLLN 560 Query: 601 QIAQVTAKG--EAEKTAILISILHEVHIQIHQI 631 Q+ + + E +I+ L ++++++ I Sbjct: 561 QLDSIAKSNSKDKEIFEKVINDLRTINLELNDI 593 >gi|260683070|ref|YP_003214355.1| DNA primase [Clostridium difficile CD196] gi|260686668|ref|YP_003217801.1| DNA primase [Clostridium difficile R20291] gi|260209233|emb|CBA62520.1| DNA primase [Clostridium difficile CD196] gi|260212684|emb|CBE03757.1| DNA primase [Clostridium difficile R20291] Length = 608 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 296/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y++ + N Y CPFH EKTPSF+ N SK Sbjct: 13 MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 68 IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +++ GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 187 KQDLLDCGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 295 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608 >gi|260903893|ref|ZP_05912215.1| DNA primase [Brevibacterium linens BL2] Length = 739 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 129/489 (26%), Positives = 214/489 (43%), Gaps = 27/489 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R+ I +L I ++G++V G CPFHDEKTPSF G Y Sbjct: 5 IKREDIDELRSRTRIDEVVGEFVTLKTAG----IGSLKGLCPFHDEKTPSFTVRPQVGMY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRL 120 +CF C GD SFL + SF+E+V+ LA G+ L D K ++ + L+ + Sbjct: 61 HCFGCGESGDVFSFLQKVEQLSFVETVEALAGKIGMHLRYEDGKGPDREQASRRQRLLEM 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 EVA FF L++ + + +L+ RG + + F LG+AP S SL L++ GF+E Sbjct: 121 HEVAQRFFTQCLESEQGQIGREFLEGRGFPLSSSKEFGLGFAPKSWDSLTSQLKRAGFTE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E+I+ GL + YDRFR R+++PI+ + I FG R L + KYLN+PET Sbjct: 181 EEILAGGLASE--GGRGIYDRFRGRVVWPIKDMTSRTIGFGARRLYDDDKGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+HK + LY A + K+ R +++VEGY DV++ AGV V++ G Sbjct: 239 ALYHKNQVLYGLDLAKKDIAKTKR----------VVIVEGYTDVMAAHLAGVTQAVATCG 288 Query: 300 TALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 TA ++++ + + +++ FDGD G +AA +A + + + Sbjct: 289 TAFGPEHVKIVRRLLGDDPTGQVIFTFDGDAAGQKAALRAFEFESEFTA---QTFVAVEP 345 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DP G A +LI PL + + ++ + R + Sbjct: 346 DGLDPCDLRMQKGDGALRELIDGRKPLFEFVITTAISRYDLDSVEGRIAAVKASAEVLAD 405 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I+D+ +Y + + R+ + + + + ++ ++ Sbjct: 406 IRDRNSLSHYYRFVAGRIGVDIDEVESAVRDARKRPSRPQANQSRQPQPAPSQTPPGAPP 465 Query: 475 KLSKKPSLR 483 S P Sbjct: 466 VASGPPGQA 474 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 16/173 (9%), Positives = 49/173 (28%), Gaps = 8/173 (4%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLF 523 S + +S E L+ + HP + + + L+ +++ +++ + + Sbjct: 567 ERPDVSNLSAPISPARLKTEKGALMVALQHPEFVNAKLFDSLSARAFEHPGYRRIQAAVK 626 Query: 524 SDFV----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + R + + L V + +G+ Sbjct: 627 AAGGLKSAGGAQTAGTAAATRWADAVLSASAEDLKPYVTQLLVTPLP--VADGVSAEGFA 684 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + L R E+ ++ + L+ L + +++ Sbjct: 685 RGIVARLFDYDLERIANELHSRLQRQDTTD-TAAQTTLLGQLQVLEQHRARLK 736 >gi|302874341|ref|YP_003842974.1| DNA primase [Clostridium cellulovorans 743B] gi|307689392|ref|ZP_07631838.1| DNA primase [Clostridium cellulovorans 743B] gi|302577198|gb|ADL51210.1| DNA primase [Clostridium cellulovorans 743B] Length = 591 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 163/629 (25%), Positives = 270/629 (42%), Gaps = 46/629 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+ ++ I ++I + V R N Y+ CPFH E +PSF + K Sbjct: 2 ISEEIIQRIIDENDIVDVITESGVRLKRSGRN-----YFGLCPFHHENSPSFSVSPEKQI 56 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C G+ + ++ S+ ++++ LA + + +IE K K + Sbjct: 57 FKCFGCGEAGNVIGYVMKNKNMSYYDTLKYLAERVNIQVEENKAEIENK-KRIQRFYDIN 115 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A +F +L K Y RGI+ I+ F LGYA DS L ++L+ K ++++ Sbjct: 116 VDAARYFFSNLMKN--KEALSYFTGRGIELGTIKSFGLGYALDSWGELLKYLKSKKYTDK 173 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +I+ GL I+G + YDRFRNR+IFP+ +G VI FGGR L KYLNSPE+ + Sbjct: 174 EILSLGLAIEG-KNNRIYDRFRNRVIFPVFDYKGNVIGFGGRVL-DDSKPKYLNSPESRI 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K KNLY A+ + ++I+VEGYMD +SL Q GV NVV++LGTA Sbjct: 232 FEKRKNLYGLNFAIK-----------KGLKDYVIIVEGYMDAISLHQFGVTNVVATLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT Q +LL + ++++ +D D G A + + + G V + + G+DPD Sbjct: 281 LTTEQAKLLKRYVNKVIIAYDADFAGQSATMRGLKI---LKEAGFLVYVLRIPEGKDPDE 337 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +IR GK AF KL+ + L + N + + +E+ N + D R Sbjct: 338 YIRNNGKLAFVKLVEAAESLTEYRISSLEGNFNIDKQEEKIAFINEAANVLKE-SDPIER 396 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ Q + + G + + Q L L K Sbjct: 397 DIYVKKLAEKTYISEQAIYDKIAEKGINANLEQQEYNFGDNGQNLY--------LEKGYI 448 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E ALL L+ + ++ + + L++ + + Sbjct: 449 KAERALLKILLQKEEYTKFIVDNISVEEMILDSHKFLYNLILGC-----------MDVSF 497 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEK 600 E+ LK D E N +V + + L + L +K E+ K Sbjct: 498 EEKVKSVQLKCTDNDSFKELTHILLEEINYEEVEVEKLIEDYILSIKKNNLEIKKRELVK 557 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 +I Q A G+ ++T + + L E+ + Sbjct: 558 KIKQCEAAGDIQETIVYVKELEEIQRNLK 586 >gi|182624463|ref|ZP_02952247.1| DNA primase [Clostridium perfringens D str. JGS1721] gi|177910466|gb|EDT72843.1| DNA primase [Clostridium perfringens D str. JGS1721] Length = 595 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTIPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|163786375|ref|ZP_02180823.1| putative DNA primase [Flavobacteriales bacterium ALC-1] gi|159878235|gb|EDP72291.1| putative DNA primase [Flavobacteriales bacterium ALC-1] Length = 655 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 145/669 (21%), Positives = 270/669 (40%), Gaps = 64/669 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + +IG +V + +N + PF DE++PSF + K + Sbjct: 2 ISQNTIAQVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+K + + L + Sbjct: 57 KDFSSGKGGNAVTFLMEHEHFTYPEAIKYLAKKYNIEIEETERTDEEKAQQNARESLYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A ++F L + Y ERG I+ F+LGYA D + + KG+ Sbjct: 117 SEYANEYFQKILHKTDQGKAIGLSYFKERGFTEETIKKFQLGYALDEWQAFTDDALGKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + + GL I +DRF+ R++FPI S G+++ FGGR L + KYLNSP Sbjct: 177 NIDFLEQTGLTIV--KEQKRFDRFKGRVMFPIHSMSGRILGFGGRILVNDKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ QAG++NVVSS Sbjct: 235 ESEIYHKSKILYGLYFAKQSIAK----------EDNCYLVEGYTDVIQFHQAGIKNVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTAL+ Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V GE Sbjct: 285 SGTALSAEQIRLINRLTNNITVLFDGDAAGIRASIRGIDL---ILEQGVNVKVCTFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + + + + N P ++AE + N I+ I D Sbjct: 342 DPDSFAKSNTLEELTEYLNNNAKDFIQFKASLLVKEANNDPIKKAETIREIVNSISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y Q + + + + + N +++ ++ Q + K K Sbjct: 402 SIKREIYIQECARIMDISENVLFSTLAQISKKDFEETNKKYKQEQKAFQVVKNEPQPKQK 461 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL------------------------------ 505 ++ + L E ++ L+ + ++ + Sbjct: 462 VNVQYEL-ERKIIEILMLYGDRTEQFEDLILKEDAVSGDLILEPTMQETRVFEKIYLDLQ 520 Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 ++ + N + ++L+ + + + F ++ +L + + L + Sbjct: 521 EDEMMFSNEKFKELYYSIIDRLNQDENFSTKDFVNQLDQESASTVTSILMEDEKYNLHDW 580 Query: 565 ATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + + Q + L R L+ ++ EE + ++ + Sbjct: 581 ERNQIIPKEKEHSVPQLVSQTILSLRCYLIDQKVEEYRND--TLREDSDSRTIMEDVKDY 638 Query: 622 HEVHIQIHQ 630 + + + + Sbjct: 639 VGLKMLLSR 647 >gi|306831671|ref|ZP_07464828.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978610|ref|YP_004288326.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426096|gb|EFM29211.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178538|emb|CBZ48582.1| DNA primase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 608 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 149/634 (23%), Positives = 259/634 (40%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V R N Y CPFH EKTPSF+ + K F Sbjct: 17 AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C GD FL SF+ESV +A AG+PL V K + LI + Sbjct: 72 FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGIPLKVDVQQTQTKPQNPNQILIDI 131 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ LK + + YL +RG+ I+ F +G +P+ L + L ++ + Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKNYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 190 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 E ++ +GL + + YD F+NR++FP+ GQV+AF GR + + + KY N Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDSGQVVAFSGRIWTKEDLENKQAKYKN 250 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + T LF+K LY+ A + K + L+EG+MDV++ +AG++N V Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + +++L +DGD+ G A K+++L+ + V + Sbjct: 301 ASMGTALTPDHVRHLKRYAKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ A L+ + + + + + + I Sbjct: 356 QMDPDEFIQKNSPQALANLLENNRLSSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 415 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R ++ + QR+ L K Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSNLQSEVVK--QRVTVVELPISK 473 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E+ L+ L+ H +L E + +D ELQ L+ L E + Sbjct: 474 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFTFDTQELQALYDLLVQQ-GEVNSYDLA 531 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + R RQ+ L + + + R R L +Q Sbjct: 532 QFDDR-------------TRQMYYRVLEENLPDEIANNEIEEIIDKRDRLLRERDLQKQS 578 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I + + G+ + + + Sbjct: 579 K----LIRESSNLGDVDAALAALENFIAQKRNME 608 >gi|218248520|ref|YP_002373891.1| DNA primase [Cyanothece sp. PCC 8801] gi|257061587|ref|YP_003139475.1| DNA primase [Cyanothece sp. PCC 8802] gi|218168998|gb|ACK67735.1| DNA primase [Cyanothece sp. PCC 8801] gi|256591753|gb|ACV02640.1| DNA primase [Cyanothece sp. PCC 8802] Length = 646 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 161/613 (26%), Positives = 281/613 (45%), Gaps = 38/613 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ + I ++I YV +R DY CPFHDEKTPSF + +K Sbjct: 6 RLHPDTIEEVKQRVDIYDVISDYVVLKKRGK-----DYLGLCPFHDEKTPSFSVSPTKQL 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C+ G+ + FL + SF E V LA VP+ ++P+ ++ + + L Sbjct: 61 YYCFGCNQGGNAIKFLMEVGKQSFSEVVFDLARRYQVPIKTLEPEERQELQRQLSLREQL 120 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ + F+ H+L + + YL ++R + I+ F+LGYAP +L + + Q Sbjct: 121 YEILALTATFYQHALYQPQGENALNYLKEKRQLSEETIQQFQLGYAPAGWETLYRYLIEQ 180 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + EAGL+ N + YDRFR+R+I PI +G+VI FG R+L E KYLN Sbjct: 181 KRYPIALAEEAGLISPRKNGSGYYDRFRDRVIIPILDIQGRVIGFGSRSL-GDELPKYLN 239 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF+KG+ L+ A N ++ S I+VEGY D ++L G+ N V Sbjct: 240 SPDTPLFNKGQILFALDQAKNAIR----------SLDKAIVVEGYFDAIALHSVGINNTV 289 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGTAL++ QL+ L + + +I+ FD D+ G++A +AI+ + + G ++ + Sbjct: 290 ASLGTALSQTQLKQLLRYTESKQIIFNFDADEAGIKATQRAINEIESLVYSGQVQLRILN 349 Query: 353 LSRGEDPDSFIRCYG--KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + G+D D F+R + + +L+ S D ++ ++ D ++ + Sbjct: 350 IPDGKDADEFLRSHPDAVENYHQLMENSPLWFDWQIQQLLIDKHLKKADHFEQIAQEMVK 409 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQ-LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 +N ++D R YY + + L Q + KK + ++++ Sbjct: 410 LLNRLEDSNKRTYYIRYCAEILSQGDTRSLSIYIKNLQNQLKKPKSLVSAIKNTTSIIKT 469 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFV 527 S + + + ++ P QE + +L + + + + LW + Sbjct: 470 SSSTEDKLLEKAEKLLL--RIYLHCPDYRQEIFNQLEEKDLIFTLSHHRLLWQQILE-IE 526 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 PE++ + ER L QL Q D S +E + D+ + L Sbjct: 527 SDINQTPEQLISLVQERSLQ--LSQLTNQFNDIFHLSENSEKDTQDIDS---NRIPLLIH 581 Query: 588 FRLLSRQKEEIEK 600 L+ + ++EK Sbjct: 582 SALIRMEIVKLEK 594 >gi|94263093|ref|ZP_01286912.1| DNA primase [delta proteobacterium MLMS-1] gi|93456636|gb|EAT06744.1| DNA primase [delta proteobacterium MLMS-1] Length = 599 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 163/628 (25%), Positives = 267/628 (42%), Gaps = 51/628 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R+ ++ + I+ +IG++V R N CPFH EKTPSF N +G ++C Sbjct: 18 RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122 F C GD SFL F E++++LAA +PL P+ ++ + + L + Sbjct: 73 FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132 Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180 A +H L + + YL +RG+ + IE F+LGYAP LR+ R+K Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L YDRFR R+IFPI G+V FGGR L +GE KYLN+ ET Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY + L+K + +LVEG D+L+L GV+ VV+ LGT Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QLR+L +VL FDGD GL+AA +A+ L L + G +L +G+DPD Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419 S+IR +G+ ++L+ E L + ++ R + + + L ++ + DQ Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR + +RL Q++ + ++R + + + + Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E + L H L + + L + S + PE + + Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R L+ L + + ++ Q L + + R+ E + Sbjct: 522 HTEGR-LKSLVSSL---------LIDGADFYPEEQQEASAQELLSWLQRHRRRREAEALV 571 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++I G+ +K L+ + + Sbjct: 572 QEINAAHLAGDQQKVMELMLKKQTLQKE 599 >gi|110799913|ref|YP_696688.1| DNA primase [Clostridium perfringens ATCC 13124] gi|168208710|ref|ZP_02634335.1| DNA primase [Clostridium perfringens B str. ATCC 3626] gi|110674560|gb|ABG83547.1| DNA primase [Clostridium perfringens ATCC 13124] gi|170713185|gb|EDT25367.1| DNA primase [Clostridium perfringens B str. ATCC 3626] Length = 595 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRTGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA D + +LR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKDGWQNTINYLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI S L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSSKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|126699058|ref|YP_001087955.1| DNA primase [Clostridium difficile 630] Length = 608 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 296/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y++ + N Y CPFH EKTPSF+ N SK Sbjct: 13 MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 68 IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ ++E GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 187 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 295 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608 >gi|295105508|emb|CBL03052.1| DNA primase, catalytic core [Faecalibacterium prausnitzii SL3/3] Length = 591 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 141/583 (24%), Positives = 258/583 (44%), Gaps = 33/583 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P ++I++L I L+G YV R+ Y CPFH EKTPSF+ + Sbjct: 2 IPHEYIEELTRRTDIVELVGSYVQLKRKGR-----LYGGLCPFHSEKTPSFYVYPDTQSF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD +SF+ + S E+++ LA+ AG+P P D K + +++ ++ + + Sbjct: 57 YCFGCQAAGDAISFVKKINNISSGEAIKMLASRAGMPEPQEDDKTGR---LRSRVLSMNK 113 Query: 123 VATDFFHHSLKNA--RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A FFH L + ++ Y RG+D I F LGYAP+ +L ++LR KG+++ Sbjct: 114 EAARFFHACLNSTVEEARQARAYWRRRGLDDKTIVRFGLGYAPNDGQALYQYLRDKGYNQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ +GL + Y F R++ PI RG +IAFGGR + KY+NSPET+ Sbjct: 174 QELDASGLFKRSQSG-RIYCLFWKRVMTPIFDLRGNIIAFGGRVM-DDSKPKYVNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++HK + ++ A + +L EGYMDV+S+ QAG+ V + GT Sbjct: 232 VYHKSETVFAMQIAKRSASR------------RFVLCEGYMDVISMQQAGIDTAVCACGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+R++ + + ++L +D D+ G +A ++++L +V + + +DPD Sbjct: 280 ALTPGQVRIISEYADEVILSYDSDEAGQKATLRSLEL---FRNSPVKVGVLQIPGAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ YG F+ L+ +D KR + + +R + + + Sbjct: 337 EYIKKYGPERFQALLDGVGNALDFRLKRLRDQYDLSQDAQRLQYVKEAVEMLAERSNPTE 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-----GPSQRLMQSSLVKGK 475 + Y+ + + + + + R + G ++ G Sbjct: 397 QEVYAGRLAEETNISKTAILAQLGTAVKRAGGKYRREKNRELLRSGEMDQIKVPYSAGGS 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + + LL ++ P L+ Q+L ++ + ++L+ + + E Sbjct: 457 QALGIASAQQRLLAAILREPRYLELAKQQLTVEQFIQPQQKELYEAMLNCSREGVELSLT 516 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + E E L +L Q D + + +G Sbjct: 517 ALRAFVSEEALNE-LSRLAAQYSDVNCTPDDIRLYLDRIARGM 558 >gi|288800823|ref|ZP_06406280.1| DNA primase [Prevotella sp. oral taxon 299 str. F0039] gi|288332284|gb|EFC70765.1| DNA primase [Prevotella sp. oral taxon 299 str. F0039] Length = 657 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 151/672 (22%), Positives = 288/672 (42%), Gaps = 63/672 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I +++ ++V R N Y CPFH+E+TPSF + S+G Sbjct: 2 IDRLTVEKIKDAANIVDVVSEFVSLRRSGAN-----YKGLCPFHNERTPSFFVSPSRGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CFSC G ++F+ +++E+++ LA + + K +++ + + + Sbjct: 57 HCFSCGRGGTPINFIMEHEQMTYVEALRWLARKYNIEIKERELTDKERQEQSERDSMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+F L + Y RG I F LGY R+ L + KG+ Sbjct: 117 NEWAADYFKQILLESEGGNSIGLQYFRSRGFRDDIISKFHLGYDVQDRHQLAREAQAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + +++ G+ D S DR+ R+IFP S G+++ FGGR L KG + KY+N Sbjct: 177 QLDFLLKTGICYKNDRS-EYIDRYSGRVIFPWLSVSGKIVGFGGRLLDSRTKGVAQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY + A + + R + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSEIYHKEQLLYGIYQAKKAISREDR----------VYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+R+L + + I L +DGD G+ AA + D++L G + ++L Sbjct: 286 ANSGTALSVHQIRMLHRFTSNITLLYDGDAAGIHAALRGTDMILAE---GMNIKVLILPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F++ I + + + +K P +R+E + I + Sbjct: 343 GDDPDSFARKHSSADFKQYIEDHQ-VDFIQFKTNLMLNGVTDPAKRSEAINSIVQSIAVV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-KNARHRDQKGPSQRLMQSSLVKG 474 +Q LR Y RL I + R + + + + + ++ K Sbjct: 402 PNQILRDTYIHDCAQRLNIAESTLINTMNKLIREAQDRMNKTPNAEAQRANSTSTTTQKY 461 Query: 475 KLSKKPSLREAALLLTLINHPAIL--QEQYQE------------------LADIRYDNNE 514 + E L+ +I H + ++ E ++R+ + Sbjct: 462 TNNPSIPKVETMLMQVIIRHGDFIIYRDIEDEEGNLINLTVAEWINYSLAAENLRFSADI 521 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL---------DRQVRDAGLWSA 565 ++ + + F E+ + +L +L +++ + Sbjct: 522 YNRVLDETLAHLQDDN-FSAEQYFIHHNDIEISQLATELILDKYQYIREQKEESTVKQNV 580 Query: 566 TTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 + EA + + + + L F LL R+ ++I+ +I Q E+ A L+ Sbjct: 581 SDEARMEKETEKLRNEVLHLLLDFHFDLLERRLQQIKMEITQPNHT--PERMASLMKEFR 638 Query: 623 EVHIQIHQIESQ 634 + + +++ Q Sbjct: 639 DTQQKRNELAQQ 650 >gi|189463796|ref|ZP_03012581.1| hypothetical protein BACINT_00129 [Bacteroides intestinalis DSM 17393] gi|189438746|gb|EDV07731.1| hypothetical protein BACINT_00129 [Bacteroides intestinalis DSM 17393] Length = 694 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 169/696 (24%), Positives = 287/696 (41%), Gaps = 93/696 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L + I +++ +V +R N Y CPFHD+KTPSF+ + SKG Sbjct: 2 IDQPTIDRILDAVQIVDIVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFSCGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKLMQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S ++ + +KGF Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIKKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSSATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q++L+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIKLIHRFTNNITVLYDGDVAGIKASLRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDSF R + T F+K I ++ + P +RAEL +L I+ I Sbjct: 343 GEDPDSFARKHNATEFQKFIQDNETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402 Query: 416 KDQKLRYYYSQAIRDRLQQ-------------LFQKYITEHSGYGRYWKKNARHRDQKGP 462 + +R Y + L+ Q K NA + P Sbjct: 403 PEAIVRDVYIKECSQLLRIEDKLLVSEVAKRRETQAEKQAEQRNRETRKNNAARDATQAP 462 Query: 463 SQRLMQSSLV--------------------------------KGKLSKKPSLREAALLLT 490 MQ +GK ++ E +L Sbjct: 463 LPDGMQPPYPEDMPPYPMDGEMPDGGAPLPPEAAEYVSYIPQEGKEGQEFYKYERLILQM 522 Query: 491 LINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ + + + +L ++ + N +++ + + + Sbjct: 523 VVRYGEKVLCNVPDEEGKEIPITVTEYVVNDLKEDELAFHNPLHRQMLTEAAEHIHNEGF 582 Query: 532 FLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +L +L DR A + L + +F Sbjct: 583 TAERYFLAH-PDPIISKLSTELIADRYQLSKYHSKAQRLVTDEERLFELVPTLMINFKFA 641 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++S + + + + + E+ ++ E+ Sbjct: 642 IISEEMKHMMYALQDPAVANDEEQCTSIMKRYSELR 677 >gi|325281153|ref|YP_004253695.1| DNA primase [Odoribacter splanchnicus DSM 20712] gi|324312962|gb|ADY33515.1| DNA primase [Odoribacter splanchnicus DSM 20712] Length = 645 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 162/658 (24%), Positives = 295/658 (44%), Gaps = 50/658 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + I +I +V +R N Y CCPFH+EKT SF + SKG Y Sbjct: 2 IDQATIQKIFDAADIYEVISDFVSLKKRGVN-----YVGCCPFHNEKTGSFTVSPSKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CF C G+ ++F+ S++E+++ LAA + + + +K++ + ++ + Sbjct: 57 KCFGCGKGGNAVNFIMEHEQLSYVEALRWLAAKYNIIIEEKELSEHEKQEKSERESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +FF L + + + Y RG+D IE F LGY P++ + +KG+ Sbjct: 117 TNYAEEFFVQQLLHTDEGKSVGLGYFRRRGLDDRTIEKFGLGYCPEAWDGFTKAALEKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E +++ GL I+ + +DRFR R++FPIR G++IAFGGR ++ + KYLNSP Sbjct: 177 KKEFLVKTGLTIE--SERGLFDRFRARVMFPIRDLAGKIIAFGGRIMTNDKKSAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK + LY + A + + R LVEGY+DV+S Q G++N V+S Sbjct: 235 ESEIYHKSRTLYGIYFAKKSIVQHNR----------CYLVEGYLDVISFHQKGIENTVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ +L+P + + +DGD G++A+ + IDLVL G V V L GE Sbjct: 285 SGTSLTIEQIRLIRRLTPNVTIIYDGDAAGIKASLRGIDLVLEE---GLNVRVVSLPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+ + + + I + ++ + P ERA+L + I+ I D Sbjct: 342 DPDSYAQAHTAEEVLEYISGHETDFIHFKTKLLLTQAGSDPIERAKLITDIVRSISLIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y Q ++++ + E + + + K P+Q+ + +L K Sbjct: 402 TITRSVYVQETANQMKVEEKLLYNEIARIRKEKVGDPTPLPYKSPTQQPPRVTLTPAKTV 461 Query: 478 KKPS--LREAALLLTLINHP--AILQE--------------QYQELADIRYD--NNELQK 517 + E L+ L+ + +E ELA+ + N L++ Sbjct: 462 QVTPCDTEEMVLVRYLLLFGGQELYEEERDGMPYSVTVGEYIIHELAEDELEMLNPRLRE 521 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA--NIVDVR 575 + + ++ + + + L + LW+ + + Sbjct: 522 IQNEYRKNYRNPGFIPSKYFIGNPDVSICELVADILSEPYELSKLWTLKDSSMRTEEMML 581 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630 + + R + E +++I + G+ E+ I + + +V +I++ Sbjct: 582 DELLPKIVDNYKMRRVEILCREADEKILEFQNAGDMERLVEWIKKKNAMIKVRSRINE 639 >gi|24379276|ref|NP_721231.1| DNA primase [Streptococcus mutans UA159] gi|24377194|gb|AAN58537.1|AE014923_1 putative DNA primase [Streptococcus mutans UA159] Length = 592 Score = 331 bits (847), Expect = 3e-88, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 270/635 (42%), Gaps = 49/635 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ IK++ I I ++IG+ V R N Y CPFH EKTPSF+ + + Sbjct: 1 MVVDKEKIKEIKDSINIVDVIGEVVSLSRSGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIR 119 F++CF C GD F+ SF+ESVQ LA +G+ + + D E KKE L Sbjct: 56 FFHCFGCGRSGDVFKFVEDYRNISFLESVQVLAERSGINVTLQDKSQEVKKEHPHQKLFN 115 Query: 120 LIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A F+ LK + + YL ERG+ I FK+G AP+ L + + +K Sbjct: 116 INGDANKFYQAVLKTTKVGETARQYLYERGLTDELITYFKIGLAPNEYDYLYQAMLKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV----KYL 234 I L + +S + YD FRNR++FP+ G +I F GR ++ ++ KY Sbjct: 176 E--DTIINSGLFNLSDSNSIYDAFRNRIMFPLTDEFGHIIGFSGRIWTEEDTSKKLAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ TI+F+K LY+ A +K + L+EG+MDV++ +AG+ N Sbjct: 234 NTRSTIIFNKSYELYHLDKARTAAKK----------EHELYLMEGFMDVIAAYRAGIPNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT ++ L K + +++L +DGD G A K+++L+ V V + Sbjct: 284 VASMGTALTPEHVKHLRKFTKKVILTYDGDKAGQNAIAKSLNLL-----SNMAVEIVRIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD FI+ + EKL+ ++ W + + + + + I Sbjct: 339 GQMDPDEFIKENSEEELEKLLKQARISSAEFWIEHLKPENIDNLQAEIDYVEKIAKVIAA 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + + L + + R ++ + Q L+ L Sbjct: 399 SPSITAQNTYINKVAEFLPDFDYLQVEQAVNNERLQMRSQISEQESANQQVLID--LPVT 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E+ L L++H +L E A ++ ELQ+L+ + E + Sbjct: 457 KQLTALTKAESQLFHRLLHHDYLLNEFRNR-AHFKFTTPELQELYQ-ILKTNGEINAYDL 514 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ +L E + L + L E ++RQ Q +R ++ Sbjct: 515 SQLSNQLQETYYRVLEENL------------PEEIAEDEIRQIEDQIDKCLQR-----QE 557 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + K I + + G+ + ++ L + Sbjct: 558 MRKQSKAIRESSNHGDVDTAVEGLAALIAQKRNME 592 >gi|168215635|ref|ZP_02641260.1| DNA primase [Clostridium perfringens NCTC 8239] gi|182382362|gb|EDT79841.1| DNA primase [Clostridium perfringens NCTC 8239] Length = 595 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 170/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEVGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVRDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|159027957|emb|CAO87120.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 626 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 153/639 (23%), Positives = 282/639 (44%), Gaps = 40/639 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I I +LI + V +R +Y CPFH+EK+PSF + +K Sbjct: 5 RLHPDTIEEVKQRIDIVDLISERVVLKKRGR-----EYVGLCPFHEEKSPSFTVSPAKQM 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDL 117 YYCF C G+ + F + SF E V LA +P+ ++E++ ++ L Sbjct: 60 YYCFGCGAGGNGIKFFMEVGKQSFSEVVFDLARRYQIPIKTLAVEQRQELEQQLSLKEQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VA F+ H+L + ++ YL +R + + I F+LGY+P+ +L + + Q Sbjct: 120 YEIMAVAVSFYQHALSQPQGEKALDYLKVQRQLTAETITTFQLGYSPEGWETLYRYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + + + GL+ N + YD+FR+RL+ PI S+G+ IAFG R+L E KYLN Sbjct: 180 KRYPVALVEQVGLIKARQNGSGYYDQFRDRLMIPIFDSQGRAIAFGSRSL-GNEQPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP+T LF KGK L+ A + I+VEGY D ++L AG+ NVV Sbjct: 239 SPDTPLFEKGKTLFALDRAKQAI----------IQQDLAIVVEGYFDAIALHAAGITNVV 288 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 + LGTAL++ Q++LL + S +I+ FD D G++A +AI+ + + G + Sbjct: 289 ACLGTALSQEQIKLLLRYSESKQIIFNFDADQAGIKATQRAIEEINSLVYSGQVNLKILN 348 Query: 353 LSRGEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L G+D D F+ R G ++ +LI +S +D + N+ ++ + + Sbjct: 349 LPDGKDADEFLKSRADGVNSYRELIEKSPFWIDWQISQMLVNKDLKQGLHFQQVANSIVS 408 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + D R +Y + L Q + + +G S + + Sbjct: 409 LLQKLIDSNQRTFYLDYCAEILAQKDATRLPYILKNLSK-----QVNKPQGKSPAIKSKN 463 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVE 528 ++ E LLL ++ P + + L + ++ + + LW + E Sbjct: 464 ILDKSEKNGTEKAEWLLLLIYLHSPEHRRLICELLDEKDLIFNVPDYRWLWQVILEL--E 521 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + P ++ L + +R + T I+ + + A+ ++ Sbjct: 522 TQITKPRDLMSALQNHLLMITTDK-NRDFNSLFHLNEHTSQEILQPEEQIKDAIIAMEKI 580 Query: 589 RLLSRQK---EEIEKQIAQVTAKGEAEKTAILISILHEV 624 L+ ++ E++ + + ++ ++ L + Sbjct: 581 SLMEYRRYCQEQLINALDGNQREFYQQEFYQTVNKLIAI 619 >gi|319939162|ref|ZP_08013526.1| DNA primase [Streptococcus anginosus 1_2_62CV] gi|319812212|gb|EFW08478.1| DNA primase [Streptococcus anginosus 1_2_62CV] Length = 591 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 146/634 (23%), Positives = 265/634 (41%), Gaps = 51/634 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ + I +IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 IDKEIISNIKNSVNIVEIIGEVVALTKAGRN-----YLGLCPFHGEKTPSFNVVEEKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG+PL + + E+ + L + Sbjct: 57 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGIPLEIEHNRKEQSTRTHPHQALYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL ERG+ I+ F++G AP+ L + K Sbjct: 117 HAEAARFYHAVLMTTKIGEEARSYLYERGLTDEVIKHFQIGLAPNESNYLYRSVSGKFDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK----YLN 235 + + +N YD F+NR++FP+ + +GQVIAF GR + + Y N Sbjct: 177 PAIMNSGLFNLADNNLV--YDAFQNRIMFPLANDKGQVIAFSGRIWQASDIEQKVAKYKN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S I L+EG+MDV++ +AG++N V Sbjct: 235 SRSTPIFNKSYELYHLDKAKATIKK----------SHEIYLMEGFMDVIAAYRAGIENAV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT + L K + +I+L +DGD G A KA++ + V V + Sbjct: 285 ASMGTALTHEHVEHLRKFAKKIILTYDGDKAGQAATAKALNELH-----NLSVEIVRVPD 339 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ + L+ ++ + + + E + I + Sbjct: 340 NMDPDEFIKKNSADDLQNLLTKTRISDIEFLLNYLKPDNIENLQAQIEFVEQMSPLIAQV 399 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + Y + + L + + + R + + + RL + + Sbjct: 400 QSITAQNSYIYMLAELLPDFDYQQVEQAVNNHRLVNRREQQQQSHQQVSRL---DIPVTQ 456 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E+ LL +I++P IL + + D + ELQ L+ L Sbjct: 457 QVSRLIKAESHLLQRMIDNPVILNDY-RLRKDFHFVTVELQTLYDIL------------- 502 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + + E + + + E + ++ + Q + LL ++ Sbjct: 503 KTNGEVTPQDLSEQNDSVQQAWYRVLEENLPEEVSEQELIEVEQT-----RDKELLRKEN 557 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K++ + + G+A+ + ++ Sbjct: 558 QLIGKKVREASHSGDADTALEELERFIAQKRRME 591 >gi|254975008|ref|ZP_05271480.1| DNA primase [Clostridium difficile QCD-66c26] gi|255092396|ref|ZP_05321874.1| DNA primase [Clostridium difficile CIP 107932] gi|255314136|ref|ZP_05355719.1| DNA primase [Clostridium difficile QCD-76w55] gi|255516814|ref|ZP_05384490.1| DNA primase [Clostridium difficile QCD-97b34] gi|255649916|ref|ZP_05396818.1| DNA primase [Clostridium difficile QCD-37x79] Length = 596 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 296/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y++ + N Y CPFH EKTPSF+ N SK Sbjct: 1 MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 56 IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ +++ GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 175 KQDLLDCGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 283 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596 >gi|88810992|ref|ZP_01126248.1| DNA primase [Nitrococcus mobilis Nb-231] gi|88791531|gb|EAR22642.1| DNA primase [Nitrococcus mobilis Nb-231] Length = 581 Score = 330 bits (846), Expect = 4e-88, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 284/631 (45%), Gaps = 59/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL I ++IG+ + R N + A CPFH EKTPSF + +K F Sbjct: 4 KIPERFIDELLSRTDIVDVIGERLQLKRTGNN-----HHALCPFHGEKTPSFTVSQTKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G + FL F E+V RLA G+ LP E+K + L R++ Sbjct: 59 YHCFGCGAHGTAIRFLMEYERMDFREAVSRLAWRVGLELPAAAR--EEKVERHEKLYRVV 116 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A + + H L ++ + +R YL+ RG+++ F+LG+AP + SE Sbjct: 117 GRAAELYRHWLHRHPQGRRALGYLEARGLNAEIAARFELGFAPPGWN-----HLARAISE 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + A L+ +YDRFR+R++FPIR RG++I FGGR+L +G+ KYLNSP++ Sbjct: 172 HHDLVAVGLLVQREGKRTYDRFRDRIMFPIRDQRGRIIGFGGRSLGEGQP-KYLNSPDSP 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+ LY L ++ I++VEGYMDV++L Q G+ VV++LGT Sbjct: 231 IFHKGRELYGLDKVLESDRRPT----------DILIVEGYMDVVALAQYGLPRVVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A + Q+ L++L+ ++ CFDGD G +AA++A+ L L G + F+ L GEDPD Sbjct: 281 ATSTTQVERLFRLTRDLIFCFDGDAAGRQAAWRALVNTLPGLQGGRQARFLFLPEGEDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SF+R +G+ A ++ E+ PL D L +R T + D RA L + + Sbjct: 341 SFVRSHGQAATAAVLREAQPLSDFLLERLTVGVDMTSIDGRARLVDEALPLLQRLPVDVF 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG----PSQRLMQSSLVKGKL 476 R + + L QL YI G G + R + P+ R L L Sbjct: 401 RRMLIERLAG-LAQLEPDYIEACVGTGERSGLKSVPRSARRLGGMPTVRRTPVRLALALL 459 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 +P+L + L++ + + + + L+ + + + Sbjct: 460 LHRPALAQ------LVDDDEVDSLRDLTIPGLPLLVQLLELIHM--------EPHISSGA 505 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +R + L +L + E R + AL R ++ + Sbjct: 506 LLERYHDSEHATALWKLATWDPMVPDFGMEAE-----FRDALARVRALLHR-----KRLQ 555 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++ + E TA + Sbjct: 556 YLNERLQRG------ELTAAEWQEWVHLKRH 580 >gi|288803263|ref|ZP_06408697.1| DNA primase [Prevotella melaninogenica D18] gi|288334304|gb|EFC72745.1| DNA primase [Prevotella melaninogenica D18] Length = 639 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 158/661 (23%), Positives = 279/661 (42%), Gaps = 58/661 (8%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 I ++ +V + T Y CPFHD++TPSF + KG Y CFSC G+ Sbjct: 2 NASNIVEVVSDFVSLRKTGT-----SYKGLCPFHDDRTPSFSVSPVKGVYKCFSCGAAGN 56 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHH 130 + F+ ++ E+++ LA + + + +++E + + + E A +F+ Sbjct: 57 AVKFIMEHEQMTYPEALKWLANKYHIEVHERELTNEEKQQENERESMFLVNEWAAKYFND 116 Query: 131 SLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L N D Y RG I F+LG+ SR++ + + GF + +I+ GL Sbjct: 117 ILHNDVDGMAIGMQYFRSRGFRDDIIRKFQLGFCLSSRHAFADAALKAGFQRDFLIKTGL 176 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETILFHKG 245 + DRF R++FP S G+V AFGGR L KG S KY+NSP+++++HK Sbjct: 177 C-FERENGELIDRFNGRVMFPWVSVSGKVTAFGGRLLDSRTKGVSQKYVNSPDSVIYHKE 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 + LY F A + K + +VEGY DV+S+ Q G++NVV++ GTAL+ + Sbjct: 236 RELYGIFQAKKAIAK----------HDLVYMVEGYTDVVSMHQCGIENVVANSGTALSVH 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+RLL + + IVL +DGD+ G AA + D+ L G V +LL G+DPD F R Sbjct: 286 QIRLLRRFTSNIVLLYDGDEAGQHAALRGTDM---LLAEGMNVKVLLLPDGKDPDEFARS 342 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 Y F K I ++ +++K + P +R+E + I+ IKD LR Y Sbjct: 343 YSADDFRKYIEDNQTDF-IVFKINVLLKGVTDPIKRSEAVGSIVQSISVIKDPILRDTYI 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP----- 480 + +R + + + + ++ Q Q+ + + + ++ Sbjct: 402 RECANRTGVSERTLMEQMNRNIYSNREQQTREQQTREQQQHRTVVIEEQQREEEVDTSTQ 461 Query: 481 --SLREAALLLTLINHPA--ILQEQYQEL-------------------ADIRYDNNELQK 517 S E L+ +I I ++ E ++ + N K Sbjct: 462 LASKVEEMLIQAVIKDGEKVIFRDVKDENSGETYNLTVAQYIAYDLGSDNLGFSNELYTK 521 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + E+ + E Q + + +L R S + +R Sbjct: 522 ILQEAVEHCGEEGFKAEEYFTQH-ADINIASVAVRL-SVDRFQLAESLQVKETEQTLRDR 579 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 +A + R +S +E+ +++ QV E ++ I + ++ + + Sbjct: 580 VIHLVADF-RLEYVSSHLKELNERLLQVKDPQEMQEVMSEIMRTQNLRNELAKKTGGNIL 638 Query: 638 I 638 + Sbjct: 639 V 639 >gi|320547038|ref|ZP_08041337.1| DNA primase [Streptococcus equinus ATCC 9812] gi|320448323|gb|EFW89067.1| DNA primase [Streptococcus equinus ATCC 9812] Length = 608 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 150/634 (23%), Positives = 262/634 (41%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V+ R N Y CPFH EKTPSF+ + K F Sbjct: 17 AIDKELITEIKNSVNIVDVIGEVVNLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-IEKKEKIQTDLIRL 120 ++CF C GD FL SF+ESV +A AG+PL V + K + LI + Sbjct: 72 FHCFGCGKSGDVYKFLEEYRQISFLESVHLVAERAGIPLQVETQQMQSKPKNPNQVLIDI 131 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ LK + + YL +RG+ I+ F +G +P+ L + L ++ + Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKAYLAQRGLTDDLIDYFNIGLSPNEPDFLYQSLAKR-YE 190 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235 E ++ +GL + + YD F+NR++FP+ GQV+AF GR +K + KY N Sbjct: 191 ENALMASGLFNLSERTNRVYDAFQNRIMFPLTDDTGQVVAFSGRIWTKEDLEAKQAKYKN 250 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + T LF+K LY+ A + K + L+EG+MDV++ +AG++N V Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + +++L +DGD+ G A K+++L+ + V + Sbjct: 301 ASMGTALTPEHVRHLKRYVKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ A L+ S + + + + + I Sbjct: 356 QMDPDEFIQKNSPDALANLLENSRISSTEFFIHYLKPENSDNLQAEIAYVEQISKIIAQS 415 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R ++A Q + L K Sbjct: 416 PSITAQNSYINMVADSLPDFDYYQVEQSVNSERLQNRSA--LQTGAVQQSVTVVELPISK 473 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL L+ H +L E + + +D ELQ L+ L Sbjct: 474 NISAIMKAEGQLLQRLMKHDYLLNEFRNQ-EEFIFDTKELQNLYDILMQQGE-------- 524 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + +L + + + E ++ + Q+ L + R Sbjct: 525 -----ITSYDLAQLDGRTRQMYYRVLEENLPDEVAPNEIEEIIQKRNRLLQ-----ERDL 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ K I + + G+ + + L ++ Sbjct: 575 QKQSKLIRESSNLGDVDAALAALENLIAQKRKME 608 >gi|238927760|ref|ZP_04659520.1| DNA primase [Selenomonas flueggei ATCC 43531] gi|238884476|gb|EEQ48114.1| DNA primase [Selenomonas flueggei ATCC 43531] Length = 594 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 149/634 (23%), Positives = 268/634 (42%), Gaps = 49/634 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 F++ + I ++ YV R+ + YW CCPFH EKT SF ++GF+YC Sbjct: 7 EAFVQQVRARTDILAVVQGYVSLKRKGS-----RYWGCCPFHSEKTASFSVVPAEGFFYC 61 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122 F CH GD FLS + + E++ R A G+ P ++ +++ DL R+ Sbjct: 62 FGCHAGGDAFKFLSLIEHITPFEAILRQAEQLGIERPARQRDAREEARLRALDDLRRVNA 121 Query: 123 VATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A DFFH+ L YL RGI AIE + +G+APD+ L + +++G ++ Sbjct: 122 LARDFFHNCLTMTRYGAAGKAYLAGRGITDEAIERYGIGFAPDAWSKLSDAFQKRGVAQH 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++AGL + + YDRFR R+I PI RG+++ FGGR L KYLN+ ET + Sbjct: 182 VLVDAGLAVRRERGGGIYDRFRGRVIIPIADERGRIVGFGGRAL-GDAQPKYLNTAETPV 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K L+ A + + + + + I+VEGYMD ++ +AGV+NVV++LGT+ Sbjct: 241 FNKRKLLFGMDRAHSAIAR----------AGYTIVVEGYMDAIAAWEAGVENVVATLGTS 290 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T LL + +PRIV C+D D G A +A+ V V +LL G+DPD Sbjct: 291 FTSDHAALLLRRAPRIVFCYDSDRAGQEATLRALAAVRGRAA---EVRVLLLPDGKDPDE 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +G AF L+ ++P + + + + + + + D R Sbjct: 348 YVRTHGAEAFRALVETAVPAPAFRLRHIRAQ-MADGIEGQRAALRAMLPVLAEL-DDVER 405 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + R + + + Sbjct: 406 AAYVRRTAAEFFLDEGVVADALRRFLRRGGTAESGTAEPT-------RIAAVRQPDRALQ 458 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L+ + + P L + + ++ + + + + + I + Sbjct: 459 RAGRQLIAAVWHDPDFLASITDAVPLEAFPDDFFGTILRAIDAHIHDGGALNADFIAAQP 518 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E G +V A + A ++ +D + R L+ + ++ Sbjct: 519 PEMG---------AEVTRALVEDAPSKDTCMDALAAF--------RRVYLTAALAQHTRR 561 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 A++ + ++ + + ++ + ++QE Sbjct: 562 -AEMMMQEGKAGYVDELNAVKRIQDELARGDAQE 594 >gi|168212955|ref|ZP_02638580.1| DNA primase [Clostridium perfringens CPE str. F4969] gi|170715568|gb|EDT27750.1| DNA primase [Clostridium perfringens CPE str. F4969] Length = 595 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK AF KLI S L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKEAFIKLIQSSKKLIDYKLHRARIGIDFSDNNGLIKYAERVINILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNNK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L + + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEEDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W + I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKDLLILDHSSNIEVLVKDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|110802989|ref|YP_699285.1| DNA primase [Clostridium perfringens SM101] gi|110683490|gb|ABG86860.1| DNA primase [Clostridium perfringens SM101] Length = 595 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 171/642 (26%), Positives = 292/642 (45%), Gaps = 56/642 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + I +++ V R N + CPFH+EK+PSF + K Sbjct: 1 MRISEEIIEKVKEQNDIVDVVSDVVRLKRAGRN-----FSGLCPFHNEKSPSFSVSPDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G+ +SF+ +F+++V+ LA A + +P+ D K + +K + L + Sbjct: 56 IFKCFGCGEAGNVISFVMKTKNLNFVDAVKELADRANIIIPIEDGKQSESQKKKQVLYNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++ +L+N K Y RGI + ++ F LGYA + + HLR++GFS Sbjct: 116 NKQAARYYFSNLQNN--KEAKEYFLRRGIKENILKSFGLGYAKEGWQNTINHLRKQGFSN 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I AGL I T YDRFRNR+IFP+ +G VI FGGR L KYLNSPET+ Sbjct: 174 EAIEAAGLGIKS-EKGTFYDRFRNRVIFPVFDYKGSVIGFGGRVL-DDSKPKYLNSPETL 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG NLY A+ + +I+VEGYMD +SL Q G+ NVV+SLGT Sbjct: 232 VFHKGTNLYALNFAIKH----------GLQERTLIIVEGYMDCISLHQYGITNVVASLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ Q RLL + R+++ +D D G A + +++ G V + + +G+DPD Sbjct: 282 ALTDNQARLLKRYVDRVIISYDADIAGQMATIRGLEI---LQNAGLDVRVLTVPKGKDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 FIR GK +F KLI + L+D R F+ + + + N ++ + + Sbjct: 339 EFIRANGKESFIKLIQSAKKLIDYKLHRARIGIDFSDNNGLIKYAERVVNILSDL-NPIE 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I + Q + + KN + + K + K + Sbjct: 398 KDVYIKRISEETSIKEQAFYDLLNKNLINSNKNHENVNDK-------EEYGTKLYVEPPY 450 Query: 481 SLREAALLLTLI--NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L L + +++++ L D + ++ L + + Sbjct: 451 VKCERSVLKLLCMEENHSLVKKY---LEDDDLISPNIKSLEKII---------------N 492 Query: 539 QRLCERGFGELLKQLDRQVRDAGL---WSATTEANIVD---VRQGYQQALALYKRFRLLS 592 + E GF L K ++ + D + W E I+D + + R L Sbjct: 493 DSIEEIGFNNLGKHVEAKCEDPKVLKEWLEVKELLILDHSSNIEVLVRDYINLIRKYKLE 552 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + K++ + +++ L+ E+ ++ ++E Sbjct: 553 QEQTTVLKELKRCEQNNMFKESLDLVKRAKEISDKLKELERS 594 >gi|255100480|ref|ZP_05329457.1| DNA primase [Clostridium difficile QCD-63q42] gi|255306420|ref|ZP_05350591.1| DNA primase [Clostridium difficile ATCC 43255] gi|328887607|emb|CAJ68319.2| DNA primase [Clostridium difficile] Length = 596 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 296/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y++ + N Y CPFH EKTPSF+ N SK Sbjct: 1 MNDIKDIIEEIKARCDIASIISEYMNIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 56 IYKCFGCGEGGDVINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ ++E GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 175 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 283 TALTEQQGILIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596 >gi|219670225|ref|YP_002460660.1| DNA primase [Desulfitobacterium hafniense DCB-2] gi|219540485|gb|ACL22224.1| DNA primase [Desulfitobacterium hafniense DCB-2] Length = 614 Score = 330 bits (845), Expect = 5e-88, Method: Composition-based stats. Identities = 167/644 (25%), Positives = 292/644 (45%), Gaps = 53/644 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++++ + I + I +YV R+ N Y CPFH EKTPSF K Sbjct: 4 RIPEEIVEEVRLRSDIVDTISEYVRLQRKGKN-----YLGLCPFHAEKTPSFTVTPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ SFL +F+E+V+ LA G+ LP P+ ++++ + Sbjct: 59 FYCFGCHTGGNVFSFLMKKENWNFVETVEHLAQKHGIVLPEKELSPREKEQQTRRRRWEE 118 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + AT +FH L + Y +RG+D I+ F+LGYAPD L E L +G Sbjct: 119 IHDWATGYFHEVLLHRPEGEPGRQYFQQRGMDEETIKQFRLGYAPDRWDGLLEALSARGV 178 Query: 179 SEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 S +++ +AGL S YDRFR R+IF I SR + I FGGR L + KYL Sbjct: 179 SPQELAQAGLALERDQSEGRSRGFYDRFRKRVIFAILDSRHKTIGFGGRVLDHS-TPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET F+KG +LY A ++ F +L EGYMDV++L +AG +N Sbjct: 238 NSPETAFFNKGHHLYGMHRAHQGIR----------EHGFALLAEGYMDVIALQKAGFKNA 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTALT Q +L+ + + R+V+ +D D G +A +A +L G RV+ + LS Sbjct: 288 VASLGTALTRDQAKLIHRYTGRVVVVYDSDQAGTQATLRAGEL---LQDMGFRVDILRLS 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +DPD +++ +G F K + ++ P + ++ + + + E+AEL L I Sbjct: 345 GAKDPDEYLKTFGVEEFNKALAQAEPYIQFKYQVHVQTKPTLSAPEKAELVRELAPDIVK 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 ++ R Y + + L + E +G+ R K A + Q + + Sbjct: 405 VQSPVEREGYERFLSLELGLTLDRVQEEIAGFDRKPSKKASGEELFRNKQDISVKNRDNI 464 Query: 475 KLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFV 527 P+ A++ +I + Q + + + ++ W +F Sbjct: 465 NRCANPTPSGASVPDGVIRAERVLLRLLLEQLIPVSEFKDQWVEGFWKVAYHQQIFDYIE 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L G L ++ + + + + + ++ + + K+ Sbjct: 525 KARCIGNGA----LSGMESGPLQSKVAQIM--------LEDMELANPQRLFHDCM---KQ 569 Query: 588 FRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +S + EE++ ++ ++ G+ +++L E+ ++ Sbjct: 570 IHSMSEEETVEELQARMVELEKSGD---LTGALALLKEIGERLR 610 >gi|296451457|ref|ZP_06893194.1| DNA primase [Clostridium difficile NAP08] gi|296880194|ref|ZP_06904160.1| DNA primase [Clostridium difficile NAP07] gi|296259724|gb|EFH06582.1| DNA primase [Clostridium difficile NAP08] gi|296428783|gb|EFH14664.1| DNA primase [Clostridium difficile NAP07] Length = 608 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 295/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y+ + N Y CPFH EKTPSF+ N SK Sbjct: 13 MNDIKDIIEEIKARCDIASIISEYMSIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 67 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 68 IYKCFGCGEGGDIINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 127 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 128 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ ++E GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 187 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 245 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 246 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 294 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 295 TALTEQQGLLIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 351 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 352 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 412 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 467 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 468 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 522 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 523 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 572 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 573 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 608 >gi|254480941|ref|ZP_05094187.1| DNA primase catalytic core, N-terminal domain family [marine gamma proteobacterium HTCC2148] gi|214038736|gb|EEB79397.1| DNA primase catalytic core, N-terminal domain family [marine gamma proteobacterium HTCC2148] Length = 652 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 169/672 (25%), Positives = 288/672 (42%), Gaps = 65/672 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI DLL + I +++ + V + N Y A CPFH+EKTPSF + K F Sbjct: 4 RIPQTFIDDLLDRVDIVDVVDRRVKLRKTGKN-----YSARCPFHEEKTPSFSVSPDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 YYCF C G+ L F+ F ++++ LA G+ + P K+E+ L Sbjct: 59 YYCFGCGAGGNALGFVMDYENIEFPQAIETLANSVGMEVQREANSGGPAQAKREETNKSL 118 Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E +F+ L+ + YL ERG+ + F +G+AP +L L + Sbjct: 119 YTLMEQVANFYKQQLRQHPERSNAVKYLKERGLTGQIAKQFGMGFAPPGWDNLLTALGET 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++AG+L++ D YDRFR+R++FPIR RG+VIAFGGR L + KYLNS Sbjct: 179 EDKKALLMKAGMLVENDKG-RIYDRFRDRVVFPIRDQRGRVIAFGGRVL-GDDKPKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG+ LY F+ AL +K R +++VEGYMDV++L Q G+ + Sbjct: 237 PETDIFQKGRELYGFYEALQANRKLER----------LLVVEGYMDVIALAQHGITIATA 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA + L +++ P ++ CFDGD+ G +AA++A++ L + G + F+ L G Sbjct: 287 TLGTATSNAHLERIYRRCPEVIFCFDGDEAGRKAAFRALEAALPCMEDGRQARFLFLPEG 346 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+ +R G FE+L+ + PL L+ E D RA L I + Sbjct: 347 EDPDTVVRSGGAEKFEELLAGATPLDTFLFDSMAEGLDTGNLDGRARLSKLALPHIRLMP 406 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL---------- 466 + + QA+ +R + + + + P Sbjct: 407 EGVFKQLMFQALAERTGLELESLMRLEVPPPQPSAPASYSGRSSDPGYHPGRDQSGGAEQ 466 Query: 467 --------------------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + S + + +++ P I ++ Sbjct: 467 HRYQDGAPSLGDEQYPELDVDDDEAGPRQRAPNSQQQAGYSNLAQSAIALILHQPEIARQ 526 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + + + L + L + + GELL QL Q R Sbjct: 527 VKA--GGLTELSGDNVALLAELIDLVQRRPESNTGMLLGHWYGTPEGELLNQLAGQER-- 582 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + +A E D+ L + L++Q ++++ ++ E ++ L+ Sbjct: 583 LIPTAGIERQFNDIIYNLAHHL---PQQSKLAQQVDKLKLTNYAEVSELEKQRLRELLQE 639 Query: 621 LHEVHIQIHQIE 632 + + ++ + Sbjct: 640 KLQRDAERNRRD 651 >gi|89891782|ref|ZP_01203284.1| DNA primase [Flavobacteria bacterium BBFL7] gi|89515937|gb|EAS18602.1| DNA primase [Flavobacteria bacterium BBFL7] Length = 653 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 152/669 (22%), Positives = 281/669 (42%), Gaps = 64/669 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ + +IG +V + +N + PF DE++PSF + K + Sbjct: 2 ISRTTVDNVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 FS G+ ++FL +F E+++ LA G+ + E+K + + + + Sbjct: 57 KDFSSGKGGNAVTFLMEHEHFTFPEAIKWLANKYGIEIIETQQTDEEKQTQDQKESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A+++ LK K + + Y ER I+ F+LGY+PD + + + G+ Sbjct: 117 SKFASEWMESQLKTEMGKAIGYSYFKEREFTDETIKHFQLGYSPDQWSAFTDAAIKSGYQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E + + GL I +DRF+ R++FPIRS G+V+ FGGR L+ + KYLNSP+ Sbjct: 177 LEFLEKTGLTIV--KGEKQFDRFKGRVMFPIRSLSGRVLGFGGRILTNDKKAAKYLNSPQ 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + ++ K K LY + A + K LVEGY DV+ L QAGV+NVVSS Sbjct: 235 SDIYDKSKVLYGIYEAKQSIAK----------EDLCYLVEGYTDVIQLHQAGVKNVVSSS 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ Q+RL+ +L+ I + +DGD G+RAA + IDL L G V GED Sbjct: 285 GTALTKEQIRLIQRLTKNITVLYDGDAAGMRAAIRGIDL---ILEAGMNVRICTFPEGED 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDSF + + ++ E+ + + ++ + P ++AE+ + I + D Sbjct: 342 PDSFAKAHTQSEIEEFLTANAVDFISFKSNLLKDEAAGDPIKKAEMIRDIVQSIAKVPDD 401 Query: 419 KLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 R Y + L LF + + +K R Q P +++ + Sbjct: 402 ISREIYVRESAAILDIGEDVLFSSLAQNRNAGIKEQRKKDRRDQQSQPLKKVESAEAAVK 461 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQEL----------------------------- 505 + S+ E A++ L+ + +++ +E Sbjct: 462 --VDRRSVLEHAIIKILLLYGDKVEDFQEEFLQESEDGELVVEPVKVTMPVYEKVYLDLQ 519 Query: 506 -ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG---FGELLKQLDRQVRDAG 561 +I + N + L+ + + Q + L E +L+ Q D+ Sbjct: 520 NDEIEFSNAIFKTLYPKIVDLLLMQGKVNLNHVMSTLNEHEAMLVADLVMQEDKYQLHKW 579 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + + Y L R ++ + + + + I++ + + + Sbjct: 580 DGKMIFVKSKDETISTYTMDAILNFRRLMIEEKIKALFESISKDPSVDNTD-VLSTVRDY 638 Query: 622 HEVHIQIHQ 630 ++++ + + Sbjct: 639 NKLNRYLGR 647 >gi|257869537|ref|ZP_05649190.1| DNA primase [Enterococcus gallinarum EG2] gi|257803701|gb|EEV32523.1| DNA primase [Enterococcus gallinarum EG2] Length = 609 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 151/641 (23%), Positives = 274/641 (42%), Gaps = 44/641 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I D+ I +++GQYV + N Y+ CPFH+EK+PSF + K Sbjct: 3 RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLI 118 Y+CF C G+ FL L G SF ESV ++A I+ +PL + E + Q LI Sbjct: 58 YHCFGCGRGGNVFGFLQELEGLSFPESVLKVAEISDIPLDEQYKQTEAIDATSSQQNQLI 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A + +HH L A + YL ERG+ I+ F++G+AP+ R L + + Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQGALDYLLERGLTMALIDEFQIGFAPNERAFLEKVFLNEK 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232 + + GL + ++ DRF R++FPIR+ +G+ I F GR + K Sbjct: 178 ANAAFFADTGLFVQRNDG-QLADRFYQRIMFPIRNPQGKTIGFSGRWFQTEQDDSKDQPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET+LF+K + L+NF A ++K + L EG+MDV++ Q+G++ Sbjct: 237 YLNSPETMLFNKREVLFNFDKARRSIRK----------EGQVFLFEGFMDVIAAWQSGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N ++S+GT+LT Q+ + +++ ++LC+DGD G+ A + IDL+ H V V Sbjct: 287 NGIASMGTSLTNQQIANIERVATEVILCYDGDQAGINATNRGIDLLQEHSRVNLSV--VR 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + DPD ++R YG AF KL + + NR+ E+ + + Sbjct: 345 VPERLDPDDYVRKYGTEAFFKLAMHGRETVFAFKMDFHRANRNLANEKEQIDYVQEVLQE 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + H+ + Y + + T+ + + + Sbjct: 405 LQHVDSLLEQDRYLTQLSTEFHISRETLQTQLRQLKQTQPTPTPSPPVREAVS--VAPPP 462 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + E LL L + + + + +++ Q+++ + ++ Sbjct: 463 PRQQRKTQVEKAEELLLYRLFHDNTLNPRFKS--TGVAFIHDKYQQIYFLYDAYMETEEQ 520 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 F+ + L + + + ++ + + Q L R + Sbjct: 521 FILAKFLDFLKDEQMKQQVIEIADI------------KASEEGTEQEFQDLLQVFRKSGI 568 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + + Q + KG + L + ++ ++ Q + Sbjct: 569 AEEINQKRIQQQEARQKGNQQLELELAIAIIDLTKRLKQAK 609 >gi|89895794|ref|YP_519281.1| hypothetical protein DSY3048 [Desulfitobacterium hafniense Y51] gi|89335242|dbj|BAE84837.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 614 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 167/644 (25%), Positives = 292/644 (45%), Gaps = 53/644 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++++ + I + I +YV R+ N Y CPFH EKTPSF K Sbjct: 4 RIPEEIVEEVRLRSDIVDTISEYVRLQRKGKN-----YLGLCPFHAEKTPSFTVTPDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 +YCF CH G+ SFL +F+E+V+ LA G+ LP P+ ++++ + Sbjct: 59 FYCFGCHTGGNVFSFLMKKENWNFVETVEHLAQKHGIVLPEKELSPREKEQQTRRRRWEE 118 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + AT +FH L + Y +RG+D I+ F+LGYAPD L E L +G Sbjct: 119 IHDWATGYFHEVLLHRPEGEPGRQYFQQRGMDEETIKQFRLGYAPDRWDGLLEALSARGV 178 Query: 179 SEEKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 S +++ +AGL S YDRFR R+IF I SR + I FGGR L + KYL Sbjct: 179 SPQELAQAGLALERDQSEGRSRGFYDRFRKRVIFAILDSRHKTIGFGGRVLDHS-TPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET F+KG +LY A ++ F +L EGYMDV++L +AG +N Sbjct: 238 NSPETAFFNKGHHLYGMHRAHQGIR----------EHGFALLAEGYMDVIALQKAGFKNA 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTALT Q +L+ + + R+V+ +D D G +A +A +L G RV+ + LS Sbjct: 288 VASLGTALTRDQAKLIHRYTGRVVVVYDSDQAGTQATLRAGEL---LQDMGFRVDILRLS 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +DPD +++ +G F K + ++ P + ++ + + + E+AEL L I Sbjct: 345 GAKDPDEYLKTFGVEEFNKALAQAEPYIQFKYQVHVQTKPTLSAPEKAELVRELAPDIVK 404 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 ++ R Y + + L + E +G+ R K A + Q + + Sbjct: 405 VQSPVEREGYERFLSLELGLTLDRVQEEIAGFDRKPSKKASGEELFRSKQDISVKNRDNI 464 Query: 475 KLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLW-----SFLFSDFV 527 P+ A++ +I + Q + + + ++ W +F Sbjct: 465 NRCANPTPSGASVPDGVIRAERVLLRLLLEQLIPVSEFKDQWVEGFWKVAYHQQIFDYIE 524 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L G L ++ + + + + + ++ + + K+ Sbjct: 525 KARCIGNGA----LSGMESGPLQSKVAQIM--------LEDMELANPQRLFHDCM---KQ 569 Query: 588 FRLLSRQ--KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +S + EE++ ++ ++ G+ +++L E+ ++ Sbjct: 570 IHSMSEEETVEELQARMVELEKSGD---LTGALALLKEIGERLR 610 >gi|146319083|ref|YP_001198795.1| DNA primase [Streptococcus suis 05ZYH33] gi|145689889|gb|ABP90395.1| DNA primase (type) [Streptococcus suis 05ZYH33] Length = 596 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C GD F+ + G SF ++ LA AG + V + EK+ L + Sbjct: 57 HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F+LG AP + L + L + Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234 E + + YD F+ R+IFP+ G+++AF GR ++ KY Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K L+EG++DV++ + G+ N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L K +IVL +DGD G A KA+D + + V L Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A ++++ +S + + + + + E + I Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIECVDKIAPIIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473 + + Y + D L + + R ++ R + + + + + Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL ++ HP IL E ++ D + ELQ ++ + E F Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +++ + + ++L +V + L + + LL + Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + ++I + + G A+ + L + Q+ Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596 >gi|51244644|ref|YP_064528.1| DNA primase (DnaG) [Desulfotalea psychrophila LSv54] gi|50875681|emb|CAG35521.1| related to DNA primase (DnaG) [Desulfotalea psychrophila LSv54] Length = 617 Score = 329 bits (844), Expect = 6e-88, Method: Composition-based stats. Identities = 153/643 (23%), Positives = 264/643 (41%), Gaps = 35/643 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M D + + I +IG+ V+ R + Y CPFH EKTPSF + Sbjct: 1 MKQGEDVVALIKERADIVQIIGETVELRRSGS-----RYVGLCPFHGEKTPSFSVTAGEQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLI 118 F++CF C GD LS++ SF E+++ LA GV LP ++K + + + Sbjct: 56 FFHCFGCGESGDVLSYVMKYYALSFPEALKMLAERYGVVLPERKQSAQEKALAEKRKKMF 115 Query: 119 RLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E + L+ R YL RG+ + L YAP L Sbjct: 116 ALNEKVAAIYGQYLRTNRGAGAARDYLVRRGVGKKISADYGLCYAPSQDVEGWHFLGGHL 175 Query: 178 FSEEKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 EE ++ A L + + YDRFR+R++FPIR GQ+ FGGR + +G+ KY+NS Sbjct: 176 AKEELVLAAELGLVSAKENGGYYDRFRDRILFPIRDIAGQICGFGGRIIGEGQP-KYMNS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+++F+K L + +++ + ++ VEG D++SL AGV+NVV+ Sbjct: 235 PESLIFNKSSLLLGLYQQKEDIRR----------AGSVVFVEGNFDLISLVGAGVKNVVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTALT LRL+ + + V+ FDGD G++AA +++ L L + G LL G Sbjct: 285 PLGTALTREHLRLVKRFAEGAVMLFDGDKAGVQAAVRSVPLFLGENLMGKVS---LLPEG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPD+++R +G +L+ E+ PL + ++ + + D ++ + LK + Sbjct: 342 EDPDTYVRRHGGRGILELLAEASPLPEFAFENLVQ-EHGLSLDGKSRVIEGLKPLVQAAT 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R ++L + L Q K + Sbjct: 401 SSLQRSVILSHFAEKLGLDVISLERNLQTGEGGPAQKNVLPSSVPVITPLKQK---KTEA 457 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + ++ HP++ + + ++ + S + + PEE Sbjct: 458 VLPLDSVQRRFVQFMVLHPSLFDRLVAMGMRNILLGSVGEIIFLHMTSLLRKHRVLEPEE 517 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + +++ ++ L D G L Y LL ++ Sbjct: 518 FLGLLPKGVERKVVAEI--------LLKQGDGLAEGDDPLGELAELEAYLEVALLKKKSN 569 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +I I + E +K L+ V +++ + ++E Sbjct: 570 DILLSIQGLDQVNELDKLQDLLLEKMAVELELQGVLENFQLLE 612 >gi|259046799|ref|ZP_05737200.1| DNA primase [Granulicatella adiacens ATCC 49175] gi|259036567|gb|EEW37822.1| DNA primase [Granulicatella adiacens ATCC 49175] Length = 621 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 152/636 (23%), Positives = 280/636 (44%), Gaps = 40/636 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ ++ + + I +++GQ+V ++ + CPFHDE+TPSF + K Sbjct: 4 RISKETVQSIQSQVNILDIVGQFVQLRKQGK-----SLFGRCPFHDERTPSFTVTEEKQL 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120 ++CFSC G+ +F+ L SF ESV R+A ++ + + V P + + + L Sbjct: 59 FHCFSCGRGGNVFNFMQELENLSFPESVVRVAELSNIDIDVELPTTQTIIPRKEKKLYEA 118 Query: 121 IEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A +F+ H L K YL+ RG ++ F G++ R L + L++ + Sbjct: 119 HEKAAEFYSHVLLNTKGGKEALDYLENRGYTVETLKEFGFGFSLKDRTQLEQVLQELQLT 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KGESVKYL 234 +E+ +GL + +DRF R++ P+R+ GQ+IAF GR L KYL Sbjct: 179 DEEKEASGLFSE--KQNGFFDRFNQRIMIPLRNEHGQIIAFSGRVLPGYSDDFASQAKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPETILF K L+NF A ++K + +IL EGYMDV+S QAGVQ Sbjct: 237 NSPETILFSKRNFLFNFDLAKKNIRKQNK----------VILFEGYMDVISAWQAGVQIG 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LT Q++ L K++ I++ +DGD GL A +AI+++ ++ + Sbjct: 287 VASMGTSLTPDQIQTLQKVTDTILIAYDGDKAGLEATNRAIEMIQDTNT--FKIGIIPFD 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKNCIN 413 G DPD FI+ G AF+ L+ S V KR + + + + + ++ Sbjct: 345 NGLDPDEFIKERGTQAFKDLVEYSQETVYQFKKRFLSKKYSLQIESQKIQYIEEMIVELS 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I ++ +++ D F + + K R + + S V+ Sbjct: 405 KINNEVELNLAMKSLADEFDLDFSTVLNQVKQLRLRLGKQKRQSNAESVSYN----RQVE 460 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + K + L+ L+++ + ++ + ++ ++L+ L S E+ Sbjct: 461 IKPATKNEHIQKQLMYRLLHNEQAWTYLNRIDSEFVFPDSHYEQLYLLLQSFKNEENEVD 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ L ++ V + L + E + Q + + + L Sbjct: 521 VQQFFLFLDDKDVLN-----RNLVSEIELSNFPPECTEQE----IQDLVYVLSKKNSLKE 571 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 Q ++++ + + L+ + E+ Q+ Sbjct: 572 QLASKKEELNRAALMKDDILRQQLMREIMEIQRQLR 607 >gi|255003047|ref|ZP_05278011.1| DNA primase (dnaG) [Anaplasma marginale str. Puerto Rico] Length = 585 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 177/619 (28%), Positives = 284/619 (45%), Gaps = 51/619 (8%) Query: 23 QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 + + +R +N Y CPFH EKTPSFH N S +YCF C V GD + F+S + G Sbjct: 5 RKIKLIKRGSNH----YVGLCPFHSEKTPSFHVNCSNDMFYCFGCGVHGDVVQFVSDIDG 60 Query: 83 CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHY 142 SF E+++ LA + GV LP + E L L++ A +F L ++ Sbjct: 61 LSFREAIEYLAQVYGVSLPAKAGRGEADF-----LYELMDYAARWFVEQL--SKSPTALS 113 Query: 143 YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF 202 YL RGID I F+LGY P S ++ S EK+ +AGLL D Sbjct: 114 YLRSRGIDEKTIRKFRLGYVPVS--GIKTCFASSQISFEKVRDAGLLTK-----NFQDCL 166 Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262 NRL+FPI S+ G+VIAFGGR++S S KYLNS E LF K ++LY AL +K Sbjct: 167 YNRLVFPICSATGRVIAFGGRSVSDKHSPKYLNSAENALFKKRESLYGLHLALAAAKKLG 226 Query: 263 RKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322 R II VEGYMDVL L Q G+ NVV LGTA+TE LR +W + P +V+ D Sbjct: 227 R----------IIAVEGYMDVLILSQLGISNVVGLLGTAMTEAHLRHMWDIVPEVVVWMD 276 Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382 GD G+ A+ K L L + G+ + FV +G+DP G + L+ + L Sbjct: 277 GDGAGMNASMKIAHLALSIIKSGHSIRFVTSPQGKDPYDVCVNLGPDTAKGLVEHAKLLS 336 Query: 383 DMLWKRETENRSFNT-----PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 + +W E + + P++ LE ++ + I+D + YY +++ L + Sbjct: 337 EFVWDYELARANIASSGKVVPEQCMALEQRIREYTSEIRDVHIAKYYKSFFYQQIKALQR 396 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + GR + ++G + ++ + +R ++ T++ P + Sbjct: 397 EQ-----YNGRGVPHGSARAIEQGLRSSRLGGVSLQACAGENYQMR---VIYTIVECPRL 448 Query: 498 LQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCE--RGFGELLKQ 552 L + +++ A + + + +++ L + ++ LC F L+ Sbjct: 449 LYDVTVFEQFASLDFAD-DMRPLQQHIVDIREAHGGELSKADLIGELCSRRADFEPALRS 507 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + ++ G T + DV + ++ +LSRQ EI++QI ++ +G + Sbjct: 508 IQEKMSAIGCAFGTKGCSDADVEKRARREWEKL----MLSRQLSEIQEQIVKLRLEGRYD 563 Query: 613 KTAILISILHEVHIQIHQI 631 L EV ++ + Sbjct: 564 IALNLSEHAKEVDDRLRSL 582 >gi|328957490|ref|YP_004374876.1| DNA primase [Carnobacterium sp. 17-4] gi|328673814|gb|AEB29860.1| DNA primase [Carnobacterium sp. 17-4] Length = 617 Score = 329 bits (844), Expect = 7e-88, Method: Composition-based stats. Identities = 149/644 (23%), Positives = 283/644 (43%), Gaps = 47/644 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + + + I +++ QYV ++ N + CPFH+E+TPSF + K + Sbjct: 2 IPEETVNKVRQETNIVDVVSQYVQLKKKGKNL-----FGFCPFHEERTPSFSVAEEKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQTDL 117 +CFSC G+ +FL + G +F E+V + A ++ L D K + + + L Sbjct: 57 HCFSCGRGGNVFTFLMEVDGLTFPEAVVKTAELSQFELDESLVQDLDHKNQPNDSAKEKL 116 Query: 118 IRLIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 IR+ E + + FHH L + YL +RG+ I+ F +G+AP R LR++L K Sbjct: 117 IRVHEESAELFHHILLNTTIGEEALEYLTQRGLTREVIDTFNIGFAPRERTMLRQYLVGK 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKY 233 + +E + + GL ++ D+ DRF NR+IFPIR+ +G+ +AF GR + KY Sbjct: 177 NYEQELLKKTGLFVEKDSG-ELLDRFYNRIIFPIRNQQGKTVAFSGRIFQQDADDSAPKY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF+K L+NF A + +++ +IL EG+MDV+ +AG+ N Sbjct: 236 LNSPETQLFNKRTILFNFDLARSSIRR----------EKEVILFEGFMDVIGAWKAGITN 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GT+LT Q+ L+ + + +V+ +DGD G+ A +A DL+ + + Sbjct: 286 GIASMGTSLTNEQIHLIDRTTDHVVIAYDGDSAGVEATKRASDLLAAETNFDIDI--IRF 343 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + G DPD +I+ G AF++LI ++ + + +R + + + Sbjct: 344 AEGMDPDEYIKKNGADAFKELIAHGRETHFGFKMSYYRKSLNLSNESQRLGYIEKILSEL 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG-----YGRYWKKNARHRDQKGPSQRLM 467 + R Y + + + + + K+ + Q P++ Sbjct: 404 LSVTSAVERELYFKQLATEFELSIDSLKEQFQQKFHESRNKRTKEKQQQSQQNHPAEANY 463 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + E LL L + D + ++E Q ++ L+ F Sbjct: 464 PQVQTQKRKPTNIEHAERLLLNRLFHFEEAWIILRNAADDFHFVHDEYQMVF-ILYESFR 522 Query: 528 EQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 E + + + E L+ +++ + + + + + L + Sbjct: 523 EHTANEGMIDAFIDFVKEPELKNLIVEIELLSISSEVST-----------REIEDYLDVI 571 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R L Q +E + + + + +G+ E+ +L+ + + + Sbjct: 572 SRKSGLQLQLKEKQDALKEASRRGDKEQLRVLMIEVVNLSRLLK 615 >gi|163752997|ref|ZP_02160121.1| DNA primase [Kordia algicida OT-1] gi|161326729|gb|EDP98054.1| DNA primase [Kordia algicida OT-1] Length = 653 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 145/666 (21%), Positives = 258/666 (38%), Gaps = 58/666 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V + +N + PF DE+TPSF + K + Sbjct: 2 IAKSTIDAVFDISRVEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 FS G+ ++FL ++ E+++ LA G+ + + E+K + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIRYLANKYGIEIEETERTDEEKALANEKESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A + L A + Y ERG I+ F LGYA D + + ++G+ Sbjct: 117 SEYAKKYHQEVLWEAPQGKAIGLTYFKERGFTQETIKKFGLGYALDEWSAFTDTALKEGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 NLTYLEKTGLTIV--KGEKRFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ + QAG+ NVVSS Sbjct: 235 ESDIYHKSKVLYGLYYAKQAIAK----------EDNCYLVEGYTDVIQMHQAGIHNVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + +DGD G+RA+ + +DL L G V GE Sbjct: 285 SGTALTAEQIRLINRLTKNITVLYDGDAAGIRASLRGVDL---ILEQGMNVRVCTFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + ++ + N P ++AE+ + + I+ + D Sbjct: 342 DPDSFTKNNALEDVLAYFENNVKDFISYKASLLMEVAKNDPIKKAEVINDMMSSISKVSD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + Y + + + + K+A + ++ + K K Sbjct: 402 RIKQELYLRETSRIMDISEEVLFATLAQLQNKEIKDANKKIKQEKKAFEVIKPKEKAKSV 461 Query: 478 KKPSLREAALLLTLINHPAILQEQYQEL------------------------------AD 507 + E L+ L+ + + + + Sbjct: 462 DVQYILERKLIEILLLYGNMEATFEDLILKEDDDGELKMERELFEAKVFQKLYLDLQQDE 521 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 I N + QK++ + + E+ L R+ R Sbjct: 522 IDLANEKFQKIYYKAIEKLNATGSLELDTFVNEIEPEVANEVTDILMREERYELHNWEAQ 581 Query: 568 EA---NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + L R L++ + EE++ +++ T + + I + Sbjct: 582 NIFVKPKEETIAQLTSETILSLRCFLINLKIEELKLSLSEDTKLEDLQSILEEIKDYIFL 641 Query: 625 HIQIHQ 630 + + Sbjct: 642 KKSLSE 647 >gi|261880079|ref|ZP_06006506.1| DNA primase [Prevotella bergensis DSM 17361] gi|270333233|gb|EFA44019.1| DNA primase [Prevotella bergensis DSM 17361] Length = 659 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 142/679 (20%), Positives = 267/679 (39%), Gaps = 64/679 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R ++ + I ++ ++V + N Y CPFH+EKTPSF+ + ++G Sbjct: 2 IDRQTVEKIKDTANIVEVVSEFVTLRKSGAN-----YKGLCPFHNEKTPSFYVSPARGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 +CF C G ++F+ ++ E+++ LA + + + E+K + + + + Sbjct: 57 HCFGCGKGGTPVNFVMEHEQMTYPEALRWLAQKYHIEIKERELTDEEKAEQSQRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++F L N D + Y RG I F+LGY R +L +G+ Sbjct: 117 NDWACNYFEDLLHNHADGKAIGMQYFHSRGFRDDVIRKFRLGYDLSDRSALARAALNQGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 EE ++ G+ D DR+ R++FP G+V+ F R L KG + KY+N Sbjct: 177 KEEFLLSTGICFKTDRG-ELLDRYAGRVVFPWIGISGKVVGFTARVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP + ++HK + LY + A + K R + +VEG DV+++ Q G++NVV Sbjct: 236 SPASDIYHKDRELYGIWQAKKSIAKEDR----------VFMVEGQADVIAMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ +Q+ L + + I L +D D G+ AA K D+ L G + +LL Sbjct: 286 ANSGTALSFHQIHTLHRFTSNITLIYDNDPAGIHAAIKGTDM---LLAEGMNLKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R + F + I + + +K + + P +RA+ + I+ + Sbjct: 343 GKDPDEFARSHTAAEFREYIEQHQSDF-IQFKTDLLLKGETDPTKRADAINSIVESISMV 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL------MQS 469 +DQ LR Y R+ + I + + + R +K+ Q Sbjct: 402 QDQILRNTYIHDCAQRIDINERTLINQMNAFIRRRRKSNSSATPTMREQGADSAAGQTAP 461 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-------------------ADIRY 510 + ++ E L ++ + ++ + + Sbjct: 462 PIHTVTPMQQAGKVERMLAQMVVRYGERFIRNIKDEDGNVYDLTIAQYIRCNLESDQLEF 521 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--- 567 + K+ + F E + + Q+ L Sbjct: 522 KHQVFNKILEEAVQ-MSDNPEFRAEPYFIHHDDIQISQEATQMAADHYHFSLSKEEEILN 580 Query: 568 -------EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILIS 619 E N ++ + L L R + +E+ QI Q + E +K Sbjct: 581 EEDRRENEENEMERLKQQVDHLLLDFRMDYVELHLKELMNQIKQASDDMEQLKKLMEEYR 640 Query: 620 ILHEVHIQIHQIESQEAMI 638 + E+ ++ ++ +I Sbjct: 641 EMQEIRNKLAKMLGSNIII 659 >gi|22537573|ref|NP_688424.1| DNA primase [Streptococcus agalactiae 2603V/R] gi|25011539|ref|NP_735934.1| DNA primase [Streptococcus agalactiae NEM316] gi|22534456|gb|AAN00297.1|AE014257_4 DNA primase [Streptococcus agalactiae 2603V/R] gi|24413078|emb|CAD47156.1| DNA primase [Streptococcus agalactiae NEM316] Length = 602 Score = 329 bits (843), Expect = 8e-88, Method: Composition-based stats. Identities = 153/634 (24%), Positives = 273/634 (43%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + F Sbjct: 11 AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 ++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ + Sbjct: 66 FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 125 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 126 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY N Sbjct: 185 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 244 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A + K + + L+EG+MDV++ +AG++NVV Sbjct: 245 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 294 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 295 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 349 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F++ F++L+ + + + + + I Sbjct: 350 KMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 409 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + + L + + R ++ + + +Q L + Sbjct: 410 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTG 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 468 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 518 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + +++R E +I ++ + ++A + R L +Q Sbjct: 519 -----ITSYDLSQESDKVNRTYYIILEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQ- 571 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 572 ---SQLIRQSSNQGDEEGALAALENLIAQKRNME 602 >gi|78486148|ref|YP_392073.1| DNA primase [Thiomicrospira crunogena XCL-2] gi|78364434|gb|ABB42399.1| DNA primase [Thiomicrospira crunogena XCL-2] Length = 576 Score = 329 bits (843), Expect = 9e-88, Method: Composition-based stats. Identities = 181/605 (29%), Positives = 293/605 (48%), Gaps = 44/605 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI+DLL I +I Q V + TN Y ACCPFHDEKTPSF+ + K FY Sbjct: 9 IPRSFIEDLLARADIVQVINQRVPLKKAGTN-----YKACCPFHDEKTPSFNVSAQKQFY 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD L FL+ G SF+E+V+ LAA+ G+ +P K ++++ DL + Sbjct: 64 HCFGCGASGDALKFLTDYDGLSFVEAVETLAAMNGMEVPREKLTQKQAQQQQKTRDLYDV 123 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F+ LKN + YL +RG+ S + F +G+AP SL +L+ Sbjct: 124 MHSVAKFYRQQLKNHPTSEEAKTYLKQRGLTSEIAKEFVIGFAPPGWDSLVSNLKADATL 183 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++++E G+LI +YDRFR+R++FPIR RG+VIAFGGR LS E KYLNSPET Sbjct: 184 KQQLVETGMLIQK-EDGKTYDRFRHRIMFPIRDGRGRVIAFGGRVLSSEEQPKYLNSPET 242 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHK LY + R + I++VEGYMDV++L Q G++N V++LG Sbjct: 243 PIFHKTVTLYGLYEMRQA----------RQQVNHILVVEGYMDVVALAQFGIRNAVATLG 292 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+T L ++++ +V CFDGD+ G +AA+KA++L L + + F+ L +GEDP Sbjct: 293 TAITTEHLDIMFRQVNEVVFCFDGDEAGQKAAWKALELALPKMQDTRSIKFLFLDQGEDP 352 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN--RSFNTPDERAELEIHLKNCINHIKD 417 DS +R G F+K I +++ L L+K +T + + +L I Sbjct: 353 DSTVRQEGVEGFQKRIQQAMTLSGFLFKGLIGRLGSPVSTVEGQQQLIALATPYITSAP- 411 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + ++ + D + + K+ + + + P + S +++ Sbjct: 412 GAMPDLLTKVLSDYVDVPVWRLGQIMGIRVSSTKQPSAKKKNEQPVRIKATSIVLRLIRL 471 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 A + +LQE + N E + L + ++Q ++ E + Sbjct: 472 LMLRSHWATVFS-----DELLQELQES------HNAEFRFLAQSI--QVLKQNAYISESL 518 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L E +LKQ+ + EA I + + + + + K+ Sbjct: 519 ESWLGEPNRAHVLKQV------YAIVIQENEAFIENEFKAIVLQIGSELKK---EKDKKS 569 Query: 598 IEKQI 602 ++K++ Sbjct: 570 LQKKL 574 >gi|242279083|ref|YP_002991212.1| DNA primase [Desulfovibrio salexigens DSM 2638] gi|242121977|gb|ACS79673.1| DNA primase [Desulfovibrio salexigens DSM 2638] Length = 579 Score = 329 bits (843), Expect = 1e-87, Method: Composition-based stats. Identities = 165/618 (26%), Positives = 281/618 (45%), Gaps = 55/618 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ + + I +++ +YV+ V G + CPFH+EKT SF N +GF+YCF C Sbjct: 6 IEAIKERLDIVDIVRRYVELK-----PVSGRWMGLCPFHNEKTASFSVNGEEGFFYCFGC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEVAT 125 GD F S + G F +++++LAA AGV L VDP+ K+ + + + E A Sbjct: 61 QASGDIFDFYSHINGVEFKDALEQLAAEAGVELTPGKVDPQAAKRSSERKIFMDMHEHAA 120 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F LK + Y++ RG+D+ IE F LG + D L ++L KG++ E+ ++ Sbjct: 121 KYFSRMLKLPEGREARKYIEGRGMDTSVIESFGLGCSTDDWQGLEKYLVSKGYTAEQGVK 180 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AGLL +YDRFR RLIFPI + G+VIAFGGR ++ GE KYLNS +T ++ KG Sbjct: 181 AGLLSQN-AKGRTYDRFRARLIFPITNLSGRVIAFGGRIITNGEP-KYLNSSDTPIYKKG 238 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 ++LY A N + ++ R +L EGYMDV+SL Q G N LGTALT Sbjct: 239 EHLYGLSTARNSIARTKRA----------LLTEGYMDVISLHQFGYTNSCGVLGTALTPD 288 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q++ L +I L FDGD GL+AA ++ ++ L G V+L GED DS ++ Sbjct: 289 QVKRLSGFCSKIDLVFDGDAAGLKAALRSTEM---ILTQGVSCGVVVLPDGEDVDSILQS 345 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G F+ + ++ ++ + + S + A+ + + LR +Y Sbjct: 346 RGAEGFQVFLDKARDGLEFSLETLQKGYSPREVMDWAQG------FLKRMTSASLRAFYL 399 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + L + + SG ++ Q+ + Sbjct: 400 PKVASGLGVAEAELRSVFSGALNAPVPQQQNTVQRDQPRAATPVGAQVKDD--------K 451 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L + HP + E + ++ + LWS + + ++I L + Sbjct: 452 YFLRYAVKHPEYVVELSERGVAQVLTSHWGKTLWSKIAAH-------SGQDIIPLLDDSE 504 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 R + A + ++ D + + +A +R+ + ++ + + + Sbjct: 505 --------KRFYAGCRMEEALSGEDLEDEWRHVCRVIA-RRRYDMGRKKLTDA---LRRA 552 Query: 606 TAKGEAEKTAILISILHE 623 A+G+ E+ + +L++ Sbjct: 553 QAQGDTERVNAYLKVLND 570 >gi|302380647|ref|ZP_07269112.1| DNA primase [Finegoldia magna ACS-171-V-Col3] gi|302311590|gb|EFK93606.1| DNA primase [Finegoldia magna ACS-171-V-Col3] Length = 599 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 279/632 (44%), Gaps = 46/632 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I ++ I ++IG YV+ R +N Y CPFH+EKTPSF + SKG + Sbjct: 8 IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD +SF+ G S+ E+++ LA G+ L + ++K + + L + Sbjct: 63 HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FF+ +L + + + + D + SL HL QKG+ ++ Sbjct: 122 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLQKGYQKDD 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 IIE GL + +D+FRNRL+FPI RG +I FGGRTL KY+NSP+++ + Sbjct: 179 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 236 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K KN+Y N + IILVEGYMDV+SL G ++SLGT+L Sbjct: 237 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 285 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ + I +C+DGD G A +AI + N +++ DPD + Sbjct: 286 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ YG +F KLI ++ + +K+ + N E+ +L L ++ + +R Sbjct: 343 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + LQ T+ S K N + ++ +L + + Sbjct: 403 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTEYSDVLDINLQEKITAI---- 458 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 ++ + I + ++++ + D F + +++ +E Sbjct: 459 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEIDE------ 509 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ + + + L + L++++K++I++Q+ Sbjct: 510 ----NSVRDYFKNDIQMDRTIDYLFNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 565 Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630 + + + E+ +++ + E++ Q+ + Sbjct: 566 DLMQSVDFNDKINEEYKEILNKILEINRQLKE 597 >gi|255655464|ref|ZP_05400873.1| DNA primase [Clostridium difficile QCD-23m63] Length = 596 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 159/636 (25%), Positives = 295/636 (46%), Gaps = 45/636 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN +D I+++ I+++I +Y+ + N Y CPFH EKTPSF+ N SK Sbjct: 1 MNDIKDIIEEIKARCDIASIISEYMSIKQSGAN-----YKGLCPFHGEKTPSFYINTSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIR 119 Y CF C GD ++F+ + F+++V+ LA G+ + + + K + Sbjct: 56 IYKCFGCGEGGDIINFVMKMENLDFMDAVKILANKCGIEINTNMNEETRIKIEKSKKFQD 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ +L +++ + YL RG+D I+ F LG++ DS SL L KG+ Sbjct: 116 IHTEAARFYLSNLLGSKN-LGYEYLRIRGLDDKIIKKFGLGFSLDSWNSLMNTLISKGYK 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ ++E GL+ + YD+FRNR++FPI RG +I FGGR L KYLNSP+T Sbjct: 175 KQDLLECGLIAKNRDGTNCYDKFRNRVMFPIFDYRGNIIGFGGRVL-DDSLPKYLNSPDT 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F+K +NLY A L S I+LVEGYMD++SL Q G++NVV++LG Sbjct: 234 LIFNKKQNLYGLNFARKNL-----------ESKTIVLVEGYMDLISLYQYGIKNVVATLG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q L+ + + ++ +D D+ G++A +AID+ G V + L +DP Sbjct: 283 TALTEQQGLLIKRYADTAIISYDSDEAGIKATLRAIDI---LTKLGINVKVLDLKDAKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F+R YG + ++K + S + + + +ER + I + Sbjct: 340 DEFVRKYGLSDYKKAMDVSTHYIKYKIDHLKKEFNIQKDEERVKFAKEASKIIKQLTSPV 399 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Y++ + +++ + E YG+ + K +++QK +++++ V+ Sbjct: 400 EIDFYTKYLSNQIDINVESIKREV--YGKNYNKPYNNKNQKKIEEKVIEKVEVRQDGK-- 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E L+ ++ I + ++ + + E +++ +++ + I + Sbjct: 456 -QLVEETLIKIMLEDKKIREIALLKVEESDFLLKESKEILNYMIK----NQELDKITIDK 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E LK+L+ ++ T E + + R L Q + Sbjct: 511 LKSLNISEEYLKELNSISLNSINLENTKEI----------EGIITNIRKNSLEEQINSLL 560 Query: 600 KQIAQVTAKGE----AEKTAILISILHEVHIQIHQI 631 ++ ++ + + + + E++ + + Sbjct: 561 REQQELENNNDMKEVDGRVMEIALKIVEINKILKSL 596 >gi|91762831|ref|ZP_01264796.1| DNA primase [Candidatus Pelagibacter ubique HTCC1002] gi|91718633|gb|EAS85283.1| DNA primase [Candidatus Pelagibacter ubique HTCC1002] Length = 591 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 161/633 (25%), Positives = 288/633 (45%), Gaps = 48/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP++++ ++ + +S ++ + V +R ++ PF EKTPSF ND K Sbjct: 1 MKYPKEYLDEIKTRLKVSTVVSKSVSLKKRGK-----EFVGLSPFKTEKTPSFTVNDEKE 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ G+ F+ F E+V+ LA +AG+ + E++EK + + Sbjct: 56 FYHCFATSEHGNIFDFVMKTQNLKFGEAVKSLANLAGMRPYTFSKQDEEREKNWQEYCSI 115 Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 F+H LKN YL +R + ++ FK+G+ R S + FS Sbjct: 116 YNQYVQFYHDEILKNESLTIARDYLKKRNLSKDEVKNFKIGFV--ERNSNFYEKLKDEFS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 E+ ++E+GL + T +RFR+R+IFPI + GQ I GGRT+ + KY+NSPE Sbjct: 174 EKVLVESGLFYLDEKKNTYVERFRDRIIFPINNISGQPIGLGGRTIQENSYSAKYINSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T F KG NLYN A K + LVEGYMDV+ L + G++NVV++L Sbjct: 234 TPFFKKGSNLYNLDLARRLSNKI----------DHVYLVEGYMDVVGLSKNGIENVVANL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ +L + I++CFDGD+ G +AA +A + + L P +++F+ L GED Sbjct: 284 GTSLTDRQILMLNQFFEDIIICFDGDESGYKAALRAAENSIKELQPEKQISFLFLPDGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS+ GK F ++ + + ++ N P A E L+ IKD Sbjct: 344 PDSYANKNGKANFIDFTKQAKISIHQFIFNHYKQQTDNNPSSMAIFEKKLRAIAATIKDD 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ Y + +++ L + +K S + Q + KL Sbjct: 404 FIKKYVLEFFLEKISSLTPHSNI----------GKKQFYTKKVKSLQSTQKHFNESKLLS 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+E +LL ++N+ + QE + +I + E + + L + + ++I Sbjct: 454 GFELKEFSLLYLIMNNLDLFQENIHMIENINLFSEENKLILETLINKLKSGEKLTLDQIP 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596 +L +++ + + + +++ +SR + Sbjct: 514 ID------PQLTEKIFKFASIKHI-----------LNNHQNDQNKMFELLDEVSRDLKNY 556 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++E +I ++ +K + + + + E+ Q + Sbjct: 557 DLEFRIEELESKFSKDLSESTFNEIRELKKQKN 589 >gi|253752139|ref|YP_003025280.1| DNA primase [Streptococcus suis SC84] gi|253753964|ref|YP_003027105.1| DNA primase [Streptococcus suis P1/7] gi|253755899|ref|YP_003029039.1| DNA primase [Streptococcus suis BM407] gi|251816428|emb|CAZ52061.1| DNA primase [Streptococcus suis SC84] gi|251818363|emb|CAZ56189.1| DNA primase [Streptococcus suis BM407] gi|251820210|emb|CAR46612.1| DNA primase [Streptococcus suis P1/7] gi|319758522|gb|ADV70464.1| DNA primase [Streptococcus suis JS14] Length = 596 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C GD F+ + G SF ++ LA AG + V + EK+ L + Sbjct: 57 HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F+LG AP + L + L + Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234 E + + YD F+ R+IFP+ G+++AF GR ++ KY Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K L+EG++DV++ + G+ N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L K +IVL +DGD G A KA+D + + V L Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A ++++ +S + + + + + E + I Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473 + + Y + D L + + R ++ R + + + + + Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL ++ HP IL E ++ D + ELQ ++ + E F Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +++ + + ++L +V + L + + LL + Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + ++I + + G A+ + L + Q+ Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596 >gi|296876771|ref|ZP_06900819.1| DNA primase [Streptococcus parasanguinis ATCC 15912] gi|296432273|gb|EFH18072.1| DNA primase [Streptococcus parasanguinis ATCC 15912] Length = 621 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 142/632 (22%), Positives = 261/632 (41%), Gaps = 48/632 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ I ++ + I +IG+ V + N + CPFH EKTPSF+ + K FY+ Sbjct: 32 DKELIVEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 86 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRLIE 122 CF C GD F+ G SF+++VQ +A AG+ L ++ + +L + + Sbjct: 87 CFGCGRSGDVFKFIEDFRGVSFMDAVQIVAEKAGIALQYQARPNQQAQVNPHQELYEIHQ 146 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A+ F+ L + YL ERG+ I F+LG AP + L +L +K + Sbjct: 147 EASKFYQAILMTTKMGEEARNYLHERGLTDEVIRHFQLGLAPAAGNYLYRNLSEKFSEKV 206 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLNSP 237 I T +D F++R++FP+ G+VIAF GR K KY NS Sbjct: 207 ITDSGLFTISDTG--TVFDAFQDRIMFPLTDDSGRVIAFSGRLWKKIDDGSHHAKYKNSR 264 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 T LF+K LY+ A +K + ++EG+MDV++ +AG++N V+S Sbjct: 265 STRLFNKSYELYHLDQAKASAKKQ----------HEMYVMEGFMDVIAAYRAGIENAVAS 314 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT ++ L + S ++VL +DGD GL A KA+D++ + V + Sbjct: 315 MGTALTPEHVQHLSRFSKKVVLTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 369 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ L+ S + + + + E + I + Sbjct: 370 DPDEYLKKTSPEDLAGLLKNSRISKVEFLMQYWKPQYIENLQAQIEFVEKMAPIIAQTRS 429 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + D L I + R ++ + + L ++ Sbjct: 430 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEAQSSGQSRTSNFSVDLLPNRGMT 489 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E LL + + P +L + + D +D ELQ L+ L + +++ Sbjct: 490 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFSFDTPELQILYQLLC----QNGEVTSQDL 543 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ + E ++ G + + + LL ++ ++ Sbjct: 544 SEQAEG--------------VQHAWYRMLEEDLPEEIADGELEEVEATRTRELLRKESQQ 589 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I ++ + ++ G+AE+ + + L ++ Sbjct: 590 IGNKVKEASSTGDAERALLELERLIAQKRRME 621 >gi|71082747|ref|YP_265466.1| DNA primase [Candidatus Pelagibacter ubique HTCC1062] gi|71061860|gb|AAZ20863.1| DNA primase [Candidatus Pelagibacter ubique HTCC1062] Length = 591 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 161/633 (25%), Positives = 288/633 (45%), Gaps = 48/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M YP++++ ++ + +S ++ + V +R ++ PF EKTPSF ND K Sbjct: 1 MKYPKEYLDEIKTRLKVSTVVSKSVSLKKRGK-----EFVGLSPFKTEKTPSFTVNDEKE 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF+ G+ F+ F E+V+ LA +AG+ + E++EK + + Sbjct: 56 FYHCFATSEHGNIFDFVMKTQNLKFGEAVKSLANLAGMRPYTFSKQDEEREKNWQEYCSI 115 Query: 121 IEVATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 F+H LKN YL +R + ++ FK+G+ R S + FS Sbjct: 116 YNQYVQFYHDEILKNESLTIAREYLKKRNLSKDEVKNFKIGFV--ERNSNFYEKLKDEFS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 E+ ++E+GL + T +RFR+R+IFPI + GQ I GGRT+ + KY+NSPE Sbjct: 174 EKVLVESGLFYLDEKKNTYVERFRDRIIFPINNISGQPIGLGGRTIQENSYSAKYINSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T F KG NLYN A K + LVEGYMDV+ L + G++NVV++L Sbjct: 234 TPFFKKGSNLYNLDLARRLSNKI----------DHVYLVEGYMDVVGLSKNGIENVVANL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q+ +L + I++CFDGD+ G +AA +A + + L P +++F+ L GED Sbjct: 284 GTSLTDRQILMLNQFFEDIIICFDGDESGYKAALRAAENSIKELQPEKQISFLFLPDGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS+ GK F ++ + + ++ N P A E L+ IKD Sbjct: 344 PDSYANKNGKANFIDFTKQAKISIHQFIFNHYKQQTDNNPSSMAIFEKKLRTIAATIKDD 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ Y + +++ L + +K S + Q + KL Sbjct: 404 FIKKYVLEFFLEKISSLTPHSNI----------GKKQFYTKKVKSLQSTQKHFNESKLLS 453 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L+E +LL ++N+ + QE + +I + E + + L + + ++I Sbjct: 454 GVELKEFSLLYLIMNNLDLFQENIHMIENINLFSEENKLILETLITKLKSGEKLTLDQIP 513 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-- 596 +L +++ + + + +++ +SR + Sbjct: 514 ID------PQLTEKIFKFASIKHI-----------LNNHQNDQNKMFELLDEVSRDLKNY 556 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++E +I ++ +K + + + + E+ Q + Sbjct: 557 DLEFRIEELESKFSKDLSESTFNEIRELKKQKN 589 >gi|42521866|ref|NP_967246.1| DNA primase [Bdellovibrio bacteriovorus HD100] gi|39574396|emb|CAE77900.1| DNA primase [Bdellovibrio bacteriovorus HD100] Length = 622 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 161/649 (24%), Positives = 277/649 (42%), Gaps = 51/649 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDS 58 M + +DFI+ + + ++I QY + CPF H EKT SF +++ Sbjct: 1 MRFSQDFIEKVQEANNLVDIISQYTQLKPSGSGL-----MGRCPFPDHAEKTASFSVSET 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQT 115 K Y+CF CH G+ SFL G SF E+V+ LA A +P+P D + ++++ + Sbjct: 56 KQVYHCFGCHKSGNLFSFLRDYQGMSFPEAVEYLAGRASIPMPAPDKEDAQRDQASDKKK 115 Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L+++ ++A D+F LK D + Y+ RG+ IE F +GYA L ++L Sbjct: 116 LLLKVNKLAADYFSEQLKRAPHDHPVKKYIASRGLSQEVIETFGVGYALPEWDGLEQYLL 175 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 K EA L+ +N + +D FR+RL+FPI S+ G+ IAFGGR L K E+ KY Sbjct: 176 SKNVPMALAEEARLVKARNNKSGHFDIFRDRLMFPILSAMGEPIAFGGRYLEKKENEPKY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F KGK LY Y++ S ++VEGYMD++SL QAG++N Sbjct: 236 LNSPETPVFVKGKVLYGLSQTARYIR----------SEDLALIVEGYMDLVSLYQAGIRN 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VV+++GTALT ++L +++ +V FDGD+ G+ AA +++ + L + L Sbjct: 286 VVATMGTALTPDHGKMLKRMTKNVVALFDGDNAGMEAAERSLPI---LLAADLYPKGLTL 342 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DPD +++ YG A + + + L M+ R E + + + +L LK Sbjct: 343 PNGMDPDDYVKKYGSEALKVELERAPDLFVMILARWMEGYRGDASE-KVKLADKLKPLFE 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR--------------DQ 459 I D +LR Y ++ G + Sbjct: 402 SIPDLRLRDLYLAEAAQKMNVGLPWLRQAVGIQGSGPVNSQNRPAMTRTVQPNPNMGSAN 461 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + P Q + S + S E LL ++ A + E + ++K+ Sbjct: 462 QKPPQEVSSSVEGGKISLQGASKAELMLLGLVLKSRANFDQFVNENLLESVAHEGVKKIL 521 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQG 577 + + + ++ L+ +D+ + A + Sbjct: 522 EKATDVYRQ----DLSKF-----DKLTSLLVSYVDQPEYLFQVSPANEGDPGYDEEAETK 572 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + + L Q + + + + + + E+ + ++ Sbjct: 573 LLRDCFKRVKENFLRDQAKRLARDLKNEPSSDKLEQIMNIQRNRISLNK 621 >gi|257791464|ref|YP_003182070.1| DNA primase [Eggerthella lenta DSM 2243] gi|257475361|gb|ACV55681.1| DNA primase [Eggerthella lenta DSM 2243] Length = 626 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 154/644 (23%), Positives = 256/644 (39%), Gaps = 44/644 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +IG+ +R D+W CCP H+EKTPSF + + + Sbjct: 5 ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD F+ SF E+V+RLA A + + + + L + + Sbjct: 60 HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 119 Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F+H L YL RG+ + ++LG+AP L HL KGF Sbjct: 120 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++++A + ++ DRF NR++FPI +G+ IAFGGR + KGE KYLNS ET Sbjct: 179 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHK + LY A + S+ ++VEGY DV++L +AGV+N V++LG Sbjct: 237 PLFHKSQVLYGMDKAKAAMA----------STGISVVVEGYTDVIALHEAGVRNAVATLG 286 Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353 TALT +RLL RIV FDGD+ G RAA +A+ + + V L Sbjct: 287 TALTMRHIRLLSRHAQHRIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 346 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP F+ G +KLI + PL+ +R + + RA + Sbjct: 347 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLSRAEGRAAALADALQVLA 406 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 IKD L Y+ I ++ Q I + + R + + Sbjct: 407 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPKAEGERDDESAPEGFERAVAPRRP 466 Query: 474 GKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + + E LL P + LA ++ + + E Sbjct: 467 ARNLPRAEINRRRFERQLLTLAARRPDLALLHADALAQTQWHEQAHAAIAQSMLDVLAED 526 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + E + L + + A + + LA+ Sbjct: 527 PAASSARLVT--------EASRALPDAAAVLTSGTVSETAAPEQLAAFLVEELAIGDAED 578 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + QIA ++ + ++ +L + + + + + Sbjct: 579 AVG----ALRAQIAD-PSRLDPDELEMLYEAVAAMQQDLKRRRA 617 >gi|224535830|ref|ZP_03676369.1| hypothetical protein BACCELL_00694 [Bacteroides cellulosilyticus DSM 14838] gi|224522553|gb|EEF91658.1| hypothetical protein BACCELL_00694 [Bacteroides cellulosilyticus DSM 14838] Length = 694 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 169/696 (24%), Positives = 286/696 (41%), Gaps = 93/696 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + SKG Sbjct: 2 IDQPTIDRILDAAQIVDIVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CFSC G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFSCGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKLMQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S ++ + +KGF Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSSATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+GV+NVV Sbjct: 236 SPESEIYHKSSELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q++L+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIKLIHRFTNNITVLYDGDVAGIKASLRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDSF R + T F+K I ++ + P +RAEL +L I+ I Sbjct: 343 GEDPDSFARKHNATEFQKFIQDNETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402 Query: 416 KDQKLRYYYSQAIRDRLQQ-------------LFQKYITEHSGYGRYWKKNARHRDQKGP 462 + +R Y + L+ Q K NA + P Sbjct: 403 PEAIVRDVYIKECSQLLRIEDKLLVSEVAKRRETQAEKQAEQRNRETRKNNAARDAAQAP 462 Query: 463 SQRLMQSSLV--------------------------------KGKLSKKPSLREAALLLT 490 MQ +GK ++ E +L Sbjct: 463 LPDGMQPPYPEDIPPYPMDGEMPDGGAPLPPEAAEYVSYIPQEGKEGQEFYKYERLILQM 522 Query: 491 LINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ + + + +L ++ + N +++ + + + Sbjct: 523 VVRYGEKVLCNVPDEEGKEIPITVTEYVVNDLKEDELAFHNPLHRQMLTEAAEHIHNEGF 582 Query: 532 FLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +L +L DR A + L + +F Sbjct: 583 TAERYFLAH-PDPIISKLSTELIADRYQLSKYHSKAQRLVTDEERLFELVPTLMINFKFA 641 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++S + + + + + E+ ++ E+ Sbjct: 642 IISEEMKHMMYALQDPAVANDEEQCTSIMKRYSELR 677 >gi|307154654|ref|YP_003890038.1| DNA primase [Cyanothece sp. PCC 7822] gi|306984882|gb|ADN16763.1| DNA primase [Cyanothece sp. PCC 7822] Length = 632 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 156/641 (24%), Positives = 273/641 (42%), Gaps = 38/641 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++D+ + I ++I +YV +R CPFH+EK+PSF+ + SK Y Sbjct: 6 LDPQTLEDIKQRVDIVDVISEYVVLHKRGK-----SLVGLCPFHNEKSPSFNVSPSKQVY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118 +CF C G+ ++FL L SF E LA +PL + P+ ++ + + L Sbjct: 61 HCFGCGAGGNAITFLMELRKQSFYEVALDLAKRYQIPLKTLSPQEHQQLQRQLSLKEQLY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH-LRQK 176 ++ VA +F+ H+L+ ++ YL E+ I+ F+LGYA +L + + QK Sbjct: 121 EIVAVAANFYQHALRQPEGEKALNYLKEKRHLKEETIQQFQLGYALPGWETLYRYLVEQK 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + +AGL+ + YD FR+RL+ PI +G+VIAFG RTL E KYLNS Sbjct: 181 RYPVTLVEQAGLIKQRQSGNGYYDGFRDRLMIPIHDVQGRVIAFGSRTLGTDEP-KYLNS 239 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KGK L+ A + ++VEGY D ++L AG+ NVV+ Sbjct: 240 PETPLFDKGKTLFALDKAAKSI----------TQQDQAVVVEGYFDAIALQAAGITNVVA 289 Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVLL 353 SLGTA ++ QL+ L + + +I+ FD D G++A +AI + + G ++ + L Sbjct: 290 SLGTAFSQVQLKQLLRYTDSKQIIFNFDADQAGIKATERAITEISSLVNSGQVQLKILNL 349 Query: 354 SRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 G+D D F+ F L+ + D L K+ + D+ + + Sbjct: 350 PDGKDADEFLNSSPDAGEKFRDLLKTAPLWFDWLLKQLLSQYNLKAADQFQIVAQRMVQL 409 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 ++ +++ R YY + L Q Q I H + + K S Q++ Sbjct: 410 LSQLQNPYQRTYYINYCAEILSQGDQSRIRLHENNLSKQLRKIKLNFSKN-SPLPSQNNE 468 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFLFSDFVEQ 529 + + L E LL ++ P E +L + + + + LW + E+ Sbjct: 469 ILSDEKTRLELVEKMLLKIYLHCPLHRPEIKAQLEEKDLYFSLSHHRFLWQQILDI--EE 526 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 K+ H + + L + E D+ + Sbjct: 527 KFQSEINSHDQRLLSLLQDKLLDITEYREKLQSLFYLNEIGEEDIFAAAINIQKAFNSLE 586 Query: 590 LL--SRQKEEIEKQIAQVTAKGEA----EKTAILISILHEV 624 ++ + K ++Q + + + E+ + + L + Sbjct: 587 IISHEKYKRYCKEQFSSAKSLQDQRYWHEELSRVAQQLQAL 627 >gi|169824521|ref|YP_001692132.1| DNA primase [Finegoldia magna ATCC 29328] gi|167831326|dbj|BAG08242.1| DNA primase [Finegoldia magna ATCC 29328] Length = 595 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 278/632 (43%), Gaps = 46/632 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I ++ I ++IG YV+ R +N Y CPFH+EKTPSF + SKG + Sbjct: 4 IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD +SF+ G S+ E+++ LA G+ L + ++K + + L + Sbjct: 59 HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FF+ +L + + + + D + SL HL QKG+ ++ Sbjct: 118 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLQKGYQKDD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 IIE GL + +D+FRNRL+FPI RG +I FGGRTL KY+NSP+++ + Sbjct: 175 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K KN+Y N + IILVEGYMDV+SL G ++SLGT+L Sbjct: 233 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ + I +C+DGD G A +AI + N +++ DPD + Sbjct: 282 TYDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ YG +F KLI ++ + +K+ + N E+ +L L ++ + +R Sbjct: 339 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 398 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + LQ T+ S K N + ++ +L + + Sbjct: 399 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTAYSDVLDINLQEKITAI---- 454 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 ++ + I + ++++ + D F + +++ E Sbjct: 455 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEINE------ 505 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ + + + L + L++++K++I++Q+ Sbjct: 506 ----NSVRDYFKNDIQMDRTIDYLFNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 561 Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630 + + + +K +++ + E++ Q+ + Sbjct: 562 DLMQSVDFNDKINQKYKEILNKILEINRQLKE 593 >gi|292558724|gb|ADE31725.1| DNA primase [Streptococcus suis GZ1] Length = 596 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 259/636 (40%), Gaps = 50/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C GD F+ + G SF ++ LA AG + V + EK+ L + Sbjct: 57 HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F+LG AP + L + L + Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234 E + + YD F+ R+IFP+ G+++AF GR ++ KY Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K L+EG++DV++ + G+ N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L K +IVL +DGD G A KA+D + + V L Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A ++++ +S + + + + + E + I Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473 + + Y + D L + + R ++ R + + + + + Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQFYLPPVQT 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL ++ HP IL E ++ D + ELQ ++ + E F Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +++ + + ++L +V + L + + LL + Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + ++I + + G A+ + L + Q+ Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596 >gi|304437693|ref|ZP_07397645.1| DNA primase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369326|gb|EFM22999.1| DNA primase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 593 Score = 329 bits (842), Expect = 1e-87, Method: Composition-based stats. Identities = 154/640 (24%), Positives = 260/640 (40%), Gaps = 52/640 (8%) Query: 1 MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P F++ + I ++ YV R+ YW CCPFH EKT SF S Sbjct: 1 MRDPRMEAFVQQVRAGTDILAVVQSYVSLKRKGN-----RYWGCCPFHSEKTASFSVVPS 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116 +GF+YCF CH GD FLS + + E++ R A G+ P +++ +++ D Sbjct: 56 EGFFYCFGCHAGGDAFKFLSLIEHITPFEAILRQAEQLGIERPARKRDAQEEARLRALDD 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L R+ +A DFFH+ L YL RGI AIE + +G+APD+ L + ++ Sbjct: 116 LRRVNALARDFFHNCLTMTRYGAAGKAYLAGRGITDAAIERYGIGFAPDAWSKLSDAFQK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G +E +++AGL + + YDRFR R+I PI RG+V+ FGGR L KYLN Sbjct: 176 RGVAEHVLVDAGLAVRRERGDGIYDRFRGRVIIPIADERGRVVGFGGRAL-GDAQPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET +F+K K L+ A + + + + + I+VEGYMD ++ +AGV NVV Sbjct: 235 TAETPVFNKRKLLFGMDRAHSAIAR----------AGYTIVVEGYMDAIAAWEAGVDNVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGT+ T LL + +PRIV C+D D G A +A+ V + +LL Sbjct: 285 ATLGTSFTSDHAALLLRRAPRIVFCYDSDRAGQEATLRALAAVHGRAA---ELRVLLLPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD ++R +G AF L+ ++P + + + + + + + Sbjct: 342 GKDPDEYVRTHGADAFRALVETAVPAPAFHLRHIRAQ-MADGIEGQRTALRAMLPVLAEL 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D R Y + L + R + + Sbjct: 401 -DPVERAAYVRRTAAELFLDEGVVADALRRWLRRGGAAEKPAAPTA--------GTPVRR 451 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + L+ + P L + + + + ++ + + Sbjct: 452 ADRALQRAGRQLIAAVRQDPDFLAQITAAVPLDAFPDEFFGTIFCAVAAQIAAGGVID-A 510 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + E+ + L E + R G L++ Sbjct: 511 DFIAAQPAEESAEITRAL------------VEEPPTSEARAGALAVFRRAHLTAALAQHT 558 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 E + + A E ++ + + ++ I +QE Sbjct: 559 HRAETMMQEGKAGYVDE-----LNEVKRIQDELAHIGTQE 593 >gi|306833812|ref|ZP_07466937.1| DNA primase [Streptococcus bovis ATCC 700338] gi|304424006|gb|EFM27147.1| DNA primase [Streptococcus bovis ATCC 700338] Length = 608 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 145/634 (22%), Positives = 261/634 (41%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V R N Y CPFH EKTPSF+ + K F Sbjct: 17 AIDKELISEIKNSVNIVDVIGEVVSLTRAGRN-----YIGLCPFHKEKTPSFNVIEDKQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 ++CF C GD FL SF+ESV +A AG+ L + K + LI + Sbjct: 72 FHCFGCGKSGDVYKFLEEYRQVSFLESVHLVAERAGISLKIDVQQTQTKPQSPNQILIDI 131 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F++ LK + + YL +RG+ I+ F +G +P+ L + L ++ + Sbjct: 132 HKDAAKFYNAVLKTTKEGQEAKRYLAQRGLTDELIDYFNIGLSPNEPDFLYQSLAKR-YD 190 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 E ++ +GL + + YD F+NR++FP+ GQ++AF GR + + + KY N Sbjct: 191 ENVLMGSGLFNLSERTNHVYDAFQNRIMFPLTDDSGQIVAFSGRIWTKEDLENKQAKYKN 250 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + T LF+K LY+ A + K + L+EG+MDV++ +AG++N V Sbjct: 251 TRSTALFNKSYELYHLDKARPVMSKK----------HEVYLMEGFMDVIAAYRAGIENAV 300 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + +++L +DGD+ G A K+++L+ + V + Sbjct: 301 ASMGTALTPDHVRHLKRYTKKVILTYDGDNAGQNAIAKSLELLKDFNVE-----IVRVPE 355 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ A L+ + + + + + + I Sbjct: 356 QMDPDEFIKKNSPQALANLLENNRISSTEFFIHYLKPENNDNLQAEIAYVEQISKIIAQS 415 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R ++ + QR L K Sbjct: 416 PSITAQNSYINMVADLLPDFDYYQVEQSVNSERLQNRSNMQAEVVK--QRATVVELPMSK 473 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E+ L+ L+ H +L E + +D ELQ L+ L E + Sbjct: 474 NISAIIKAESQLMHRLLTHDYLLNEFRNR-GEFIFDTQELQALYDLLVQQ-GEVNSYDLA 531 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++ + C+ + L E ++ + + + L R Sbjct: 532 QLDDQTCQMYYRVL-----------------EENLPDEIANNEIEEIIDKRDQLLQERDL 574 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ K I + + G+ + + L + Sbjct: 575 QKQSKLIRESSNLGDVDAALAALENLIAQKRNME 608 >gi|86132591|ref|ZP_01051184.1| DNA primase [Dokdonia donghaensis MED134] gi|85816833|gb|EAQ38018.1| DNA primase [Dokdonia donghaensis MED134] Length = 659 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 151/668 (22%), Positives = 262/668 (39%), Gaps = 68/668 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + +IG +V+ + +N + PF DE+TPSF + K + Sbjct: 2 ISKETIDKVFETARVEEVIGDFVNLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G +SFL S+ E+++ LA + + + E+KE + + + Sbjct: 57 KDFSTGKGGSAVSFLMEHEHFSYPEAIKYLAKKYNIEVEETERTDEQKEAANERESMYLV 116 Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+FH L + + K + Y ERG + IE F+LGY PD + ++G+ Sbjct: 117 SEYARDYFHKTMLNSEQGKAIGLSYFKERGFTAATIEKFQLGYNPDQWDAFTSEAIRQGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI S G+V+ FGGR L + KYLNSP Sbjct: 177 KLDYLEKTGLSIV--KEEKQFDRFKGRVMFPIHSMSGRVLGFGGRILDSSKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ + Q+G++NVVSS Sbjct: 235 ESDIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQMFQSGIENVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G RAA + IDL L G V GE Sbjct: 285 SGTALTPEQIRLINRLTKNITVLFDGDAAGQRAALRGIDL---ILEQGMNVRVCSFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + K E+ + P ++A+ + I+ I D Sbjct: 342 DPDSFSRKHSKEEIVAFFDENAKDFIQYKANLLVEEAAGDPVKKADTVRDMVESISKIPD 401 Query: 418 QKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + Y Q L + + + + + + + Sbjct: 402 AIKQEIYVQECARIMEVSETVLYNTLAQILKKDKKQAAKQNRGNQSQPPPEYMSVVPDEM 461 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL------------------------- 505 + E L+ +L+ + + ++ + Sbjct: 462 PNAVEKVNVLYELERKLIESLLLYGQVEEDFEDLVLKENEDGSLGLVPEVHKLRVFEKIY 521 Query: 506 -----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 ++ + N+ + L+ + F + L E+ + + Sbjct: 522 LDLQDDEVEFTNDLFKVLYVRIVEQMNLNDNFQIQNFINELAPEEASEISNIILNDEKYE 581 Query: 561 GLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 T E + Q + L R L++++ +E+ + + ++ Sbjct: 582 LHRWDTREVYVRKKDTSIAQFVSETVLSLRKYLITQKIKEL---MDKTQGSSNNQEIIKD 638 Query: 618 ISILHEVH 625 I ++ Sbjct: 639 ILDYQSLN 646 >gi|72382111|ref|YP_291466.1| DNA primase [Prochlorococcus marinus str. NATL2A] gi|72001961|gb|AAZ57763.1| DNA primase [Prochlorococcus marinus str. NATL2A] Length = 675 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 168/669 (25%), Positives = 295/669 (44%), Gaps = 68/669 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + + I +++G++V ++ +Y CPFHD+ PS K F Sbjct: 5 RLHPKTIESVKERVDIVDVVGEHVVLKKKGK-----EYVGICPFHDDSKPSMSVIPGKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 YYCFSC G+ + FL SF + V LA VP+ ++ +++ K + L Sbjct: 60 YYCFSCGAGGNAIKFLMEFQRQSFSDVVLELAKKYQVPIDTIEGPQQERLKQQLSRRDTL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 R+++ AT +F + L + + YL ++R + + F+LG+APD+ SL ++ Sbjct: 120 YRVLKTATGWFRNQLNSPCGENALNYLKNKRNLSDGTLINFELGFAPDNWDSLLKYFVDI 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + S E + AGL++ YDRFRNR+I PI + +VI FGGR+L E KYLN Sbjct: 180 EKVSVEILESAGLIVPRKGGNGFYDRFRNRIIVPIHDRQKRVIGFGGRSLDGSEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGKNL+ F + ++K + ++VEGY DV++L +G+ NVV Sbjct: 239 SPETEIFEKGKNLFGFDKSTLSIRKK----------DYAVVVEGYFDVMALHDSGITNVV 288 Query: 296 SSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ Q+ LL + S +I+L FD D+ G+RAA +AI V I G + + Sbjct: 289 ASLGTALSRNQITLLSRATDSKKILLNFDSDNAGIRAANRAISEVENLAIQGQLDLRVLQ 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD F++ + +E L +S +D + ++ + D+ E L + + Sbjct: 349 LPSGKDPDEFLKDNSPSEYEALAAKSPLWMDWQIDQSLKDLDLSKSDQFQEAVSSLVSLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + RL ++ + R R + + Sbjct: 409 GKLPQTAIRTHYLQKVAQRLSGGQGRFSLQLEEDLRNQISGQRWHGRSKK--------ID 460 Query: 473 KGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528 K + EA +L T I+ P + ++ + + + N + +WS + + Sbjct: 461 KPQEISLRERSEADILFTYIHCPNYRSFIRYELRLRDLDDFAINHHRAIWSTISNIEENM 520 Query: 529 ---------QKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDV 574 ++ I L ++ L + + E A + D Sbjct: 521 FGPEIVEKINRFNDSNNILADVDLIKKLLDNFLSSDNEHLPKLTPLLDVNELRLATLNDP 580 Query: 575 RQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQV------TAKGEAEKTAIL 617 + ALA ++ + L R + + +E IA + ++ + Sbjct: 581 ESLIRGALAALEKQKSLKRCRHLIDAWSSQRLQTLENCIASLIVQEKSEPSDSSDMEQRV 640 Query: 618 ISILHEVHI 626 IS+ +++ Sbjct: 641 ISMFEDLNN 649 >gi|167765290|ref|ZP_02437403.1| hypothetical protein BACSTE_03678 [Bacteroides stercoris ATCC 43183] gi|167696918|gb|EDS13497.1| hypothetical protein BACSTE_03678 [Bacteroides stercoris ATCC 43183] Length = 697 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 160/699 (22%), Positives = 294/699 (42%), Gaps = 96/699 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIVDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNVVHFIMEHEQMSYPEALKYLAKKYGIEVKERELSNEEKLVQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F + L N D R Y RG IE F+LGY +S ++ E +KG+ Sbjct: 117 NQFARDYFQNILHNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHNAMAEEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLVKTGLCYET-DDHQLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESAIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F++ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKY------ITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + +R Y + L+ + E R + R+ ++ Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQAERERRNAGRQAESTQNV 462 Query: 470 S------------------------------------------LVKGKLSKKPSLREAAL 487 + +GK ++ E + Sbjct: 463 TGAESSTPAAPTTADATPTAAGEVPGHNADAPFPPEDSYISFIPQEGKEGQEFYKYERLI 522 Query: 488 LLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVE 528 L ++ + +++ +L ++ + N +++ + + + Sbjct: 523 LQMIVRYGEKVMCNVTNEEGQEIPVSVIEYVVSDLKQDELSFHNPLHRQILTEAAAHIHD 582 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ--QALALYK 586 + + +L +L + + ++ + D + Y+ AL + Sbjct: 583 AGFTAERYFLAY-PDPAISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ ++S + + + + + EK ++ E+ Sbjct: 642 KYAIVSEELKHMMSALQDPAIANDEEKCNAIMKRYSEMR 680 >gi|319745369|gb|EFV97680.1| DNA primase [Streptococcus agalactiae ATCC 13813] Length = 629 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 153/634 (24%), Positives = 274/634 (43%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + F Sbjct: 38 AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 92 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 ++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ + Sbjct: 93 FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 152 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 153 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 211 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLN 235 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF GR ++ + KY N Sbjct: 212 EKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSGRVWTQEDIDRKQAKYKN 271 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A + K + + L+EG+MDV++ +AG++NVV Sbjct: 272 SRATPIFNKSYELYHLDKARAVINK----------AHEVYLMEGFMDVIAAYRAGIENVV 321 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT +R L + + ++VL +DGD G A K+++L+ V+ V + Sbjct: 322 ASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAIDKSLELL-----SDMTVDIVRIPN 376 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F++ F++L+ + + + + + + I Sbjct: 377 KMDPDEFLQANSAEDFKQLLEKGRISNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKS 436 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + + L + + R ++ + + +Q L + Sbjct: 437 PSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTG 494 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E L L+NHP +L E + +D E+Q L+ L Sbjct: 495 KLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFDTTEIQVLYELLKESGE-------- 545 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + +++R E +I ++ + ++A + R L +Q Sbjct: 546 -----ITSYDLSQESDKVNRTYYMILEEQLPVEISIGEI-EAVEKARDRLLKERDLRKQ- 598 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I Q + +G+ E + L + Sbjct: 599 ---SQLIRQSSNQGDQEGALAALENLIAQKRNME 629 >gi|332292517|ref|YP_004431126.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5] gi|332170603|gb|AEE19858.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5] Length = 658 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 160/666 (24%), Positives = 267/666 (40%), Gaps = 64/666 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + +IG +V + +N + PF DE+TPSF + K + Sbjct: 2 ISKETIDKVFETARVEEVIGDFVVLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G +SFL S+ E+++ LA + + + E+KE + + + Sbjct: 57 KDFSTGKGGSAVSFLMEHEHFSYPEAIKYLAKKYNIEIEETERTDEQKEAANERESMYLV 116 Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+FH L + + K + Y ERG + IE F+LGY PD ++G+ Sbjct: 117 SEYARDYFHKTMLNSEQGKAIGLSYFKERGFTAATIEKFELGYNPDQWDVFTSEAIRQGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI S G+V+ FGGR L + KYLNSP Sbjct: 177 KLDYLEKTGLSIV--KEEKQFDRFKGRVMFPIHSMSGRVLGFGGRILDSSKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ + Q+G++NVVSS Sbjct: 235 ESDIYHKSKVLYGIYYAKQSIAK----------EDNCYLVEGYTDVIQMFQSGIENVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD G RAA + IDL L G V GE Sbjct: 285 SGTALTPEQIRLVNRLTKNITVLFDGDAAGQRAALRGIDL---ILEQGMNVKVCSFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + K E+ + P ++A+ + I+ I D Sbjct: 342 DPDSFSRKHSKEEIVAFFDENAKDFIQYKANLLVKEAAGDPIKKADTVRDMVESISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y Q ++ + + KK +D+ S S+V ++ Sbjct: 402 AIKQEIYVQECARIMEVSETVLYNTLAQILKKDKKETVKQDRGNQSPPPEYMSVVPDEMP 461 Query: 478 KKPSL------REAALLLTLINHPAILQEQYQEL-------------------------- 505 E L+ +L+ + + ++ + Sbjct: 462 NAVEKVNVLYELERKLIESLLLYGQVEEDFEDLVLKENEDGSLELEPIIHKARVFEKIYL 521 Query: 506 ----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 ++ + N+ + L+ + + F + L E+ + + Sbjct: 522 DLQDDEVEFTNDLFKVLYGKIVAQMHLDNNFQVQNFINELAPEEASEISNIILNDEKYEL 581 Query: 562 LWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 T E + Q + L R L++ + +E+ Q T E K + Sbjct: 582 HRWDTREVYVRKKDTSVGQFVTETVLSLRKYLITEKIKELMNQTKDSTDNKEIIKDILDY 641 Query: 619 SILHEV 624 L+ + Sbjct: 642 QSLNTL 647 >gi|326693498|ref|ZP_08230503.1| DNA primase DnaG [Leuconostoc argentinum KCTC 3773] Length = 620 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 140/644 (21%), Positives = 251/644 (38%), Gaps = 48/644 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++IG+Y +R + CPFHD++ PS ++K Sbjct: 4 RIPDAFIDEVRKKVNIVDVIGEYTQLVKRGRQ-----WNGSCPFHDDRHPSLFVEENKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 + CFSC G SF+ G S+ E+V LA A +P+ + + Sbjct: 59 FNCFSCGRSGSVFSFIMEKEGLSYPEAVLSLAEKADMPVDQQLTAQAAHPIDSRTQAIYD 118 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + H L N Y D+R + I+ F +G+APD ++ + Sbjct: 119 LHSAAQRLYQHILLNTTSGETALAYLHDKRQLSDAVIKQFGIGFAPD--DNVLLQYAKDQ 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 I++A L ++ DRF R+++PI+++RGQV+ F GR L+ ++KY+NSP Sbjct: 177 NIAPDILQASELFITNDQGVMRDRFAGRIVWPIKTARGQVVGFSGRALASDNTIKYMNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ F KGK LYNF A N ++ ++ ++ EG+MDV+S AG V++ Sbjct: 237 ESPFFTKGKILYNFDRAKNQMR----------QTNTALIFEGFMDVISADMAGKTMGVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT ++ L +++ RI+L +DGD+ G +AA +AIDL+ H + V L Sbjct: 287 MGTALTPEHVQQLARVAQRILLVYDGDEAGQKAAKRAIDLISTHAQQ-VEIGVVHLPDQL 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD G A ++ + +++ + + + Sbjct: 346 DPDDLRIQRGTAALQQALEQNIQTPVEFLVNAARTGKNLSNQVQYLAFLQEVMQTLQQAT 405 Query: 418 QKLRYYYSQAIRDRLQQL-------------FQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + I + + + A P Sbjct: 406 PVEQDLQLTKIANEFGTSKQALQAQLQQTLAQNQARPAATKSYSKRAPKAYTDQMAPPPA 465 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 S G+ K E ALL+ +I P +L + + + + Q L Sbjct: 466 APADSEPRVGQRLTKVEQAERALLMAMIKSPQVLAQVKAT-TGFAFVHPDYQLLMMLAAI 524 Query: 525 DFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + F + + + + + +DR D + + + L Sbjct: 525 YQGQHPEPFDLAQFMDFIQKPALNQKIMAIDRAYGDLTIEH-----------EAIRDYLQ 573 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + +E+++ I + + K L++ L + Q Sbjct: 574 IIMEEAPIEARVQELQQLINVAKQQHDDTKLLQLMTELINLKKQ 617 >gi|315223010|ref|ZP_07864889.1| DNA primase [Streptococcus anginosus F0211] gi|315187960|gb|EFU21696.1| DNA primase [Streptococcus anginosus F0211] Length = 599 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 149/634 (23%), Positives = 264/634 (41%), Gaps = 51/634 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I D+ + I +IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 10 IDKEIISDIKNSVNIVEIIGEVVALTKAGRN-----YLGLCPFHGEKTPSFNVVEEKQFY 64 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRL 120 +CF C GD F+ G SF+++VQ +A AG PL + + E L + Sbjct: 65 HCFGCGKSGDVFKFIEDYRGVSFMDAVQIVADRAGFPLEIEHSRKELLTHTHPHQALYDI 124 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL ERG+ I+ F++G AP+ L + + K Sbjct: 125 HAEAARFYHAVLMTTKIGEEARSYLYERGLTDEVIKHFQIGLAPNENNYLYKSVSGKFDE 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235 + + + +N YD F+NR++FP+ + RGQVIAF GR + KY N Sbjct: 185 QVIMNSGLFNLADNNLV--YDAFQNRIMFPLTNDRGQVIAFSGRIWQASDIDQKVAKYKN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T +F+K LY+ A ++K S I L+EG+MDV++ +AG++N V Sbjct: 243 SRSTPIFNKSYELYHLDKAKATIKK----------SHEIYLMEGFMDVIAAYRAGIENAV 292 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT + L K + +I+L +DGD G A KA++ + V V + Sbjct: 293 ASMGTALTHEHVEHLRKFAKKIILTYDGDKAGQAATAKALNELH-----NLSVEIVRIPD 347 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD FI+ + L+ ++ + + + E + I + Sbjct: 348 NMDPDEFIKKNSADDLQNLLTKTRISDIEFLLNYLKPDNIENLQAQIEFVEQMSPLIAQV 407 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + Y + + L + + + R + + + RL + + Sbjct: 408 QSITAQNSYIYMLAELLPDFDYQQVEQAVNNHRLVNRREQQQQSHQQVSRL---DIPVTR 464 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E+ LL +I++P IL + + D + ELQ L+ L Sbjct: 465 QVSRLIKAESHLLQRMIDNPVILNDY-RLRKDFHFVTVELQTLYDIL------------- 510 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + + E + + + E + ++ + Q + LL ++ Sbjct: 511 KTNGEVTPQDLSEQNDSVQQAWYRVLEENLPEEVSEQELIEVEQT-----RDKELLRKEN 565 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + I K++ + + G+A+ + ++ Sbjct: 566 QLIGKKVREASHSGDADTALEELERFIAQKRRME 599 >gi|304439789|ref|ZP_07399687.1| DNA primase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371776|gb|EFM25384.1| DNA primase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 598 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 159/634 (25%), Positives = 273/634 (43%), Gaps = 38/634 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ I ++I +YVD ++ +N Y CPFH EKTPSF ++SK Sbjct: 1 MRIDDRVLDEIRQKSSIVDVISEYVDLKKKGSN-----YMGLCPFHSEKTPSFSVSESKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C GD ++F+ + SFIE+V+ LA + L +KK T Sbjct: 56 IFKCFGCSAGGDVITFIMKIEHLSFIEAVKFLAEKYNIELSEE-KVDKKKLDKITRCYEA 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A F+ +LKN K YL+ R I I + LG+A DS +L +++ G++E Sbjct: 115 NVLAAKFYMQNLKNN--KMALEYLERREIGPEVITAYGLGFAEDSWNNLLNYMKSNGYNE 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+++E L+ N +DRFRNR++FPI R +VIAFGGR + KYLNS +T+ Sbjct: 173 EELVEYNLVSKSQNG-KYFDRFRNRIMFPIIDLRRRVIAFGGRVM-DDSMPKYLNSTDTV 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG+NLYN N S IILVEGYMDV+SL ++G++ V+SLGT Sbjct: 231 VFHKGRNLYNQNIVKNL------------DRSRIILVEGYMDVISLYKSGIKYSVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q L+ K + +C+DGD+ G+RA +AI + G + L G DPD Sbjct: 279 ALTPEQAELVKKFGKDVYICYDGDEAGIRATKRAIGI---LRSVGVNPKIIRLPEGLDPD 335 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG FE + E+ + L + +N +T D + + IK+ Sbjct: 336 EYLKKYGAFNFEVTLSEATNYFEYLIEDLKKNFDISTTDGMTGFLVESAKLVATIKNPIE 395 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + I + + ++ + + V + Sbjct: 396 RDLEIDRLSKDYKVTRSAIINYINRNKQNYEDKRERNREYNLKNSRQTTKPVAKNIQNGF 455 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + L+ ++ + L Y ++ L + + E++ + Sbjct: 456 KKSKYQLMAYAAADENYIKIIKKYLNLEEYLEKNEVEVIKSLEEAYEKSAKDPLEDLKES 515 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ++ + + + + + K L ++EK Sbjct: 516 ----------GKITETSYRIIKEIEVSHEYPDKIIEELAKTIIKSKLQEDLKSNLSKLEK 565 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH-QIES 633 + + EK L I+ +++ ++ ++++ Sbjct: 566 -LDRNEP-NYKEKLKELSEIIIDLNQKLKGEMKN 597 >gi|58038784|ref|YP_190748.1| DNA primase [Gluconobacter oxydans 621H] gi|58001198|gb|AAW60092.1| DNA primase [Gluconobacter oxydans 621H] Length = 615 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 179/619 (28%), Positives = 280/619 (45%), Gaps = 42/619 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F+ +L P+ +LIG+ R N + CCPFH EKTPSF+ D Sbjct: 1 MAIDAAFLDELRNRTPLPSLIGRRNKLVRSGRN-----WKTCCPFHGEKTPSFYIYDDH- 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C V GD +S++ G SF E+V++LA+ AG+ +P DP+ + + + L + Sbjct: 55 -FHCFGCGVHGDAISYVMQSEGRSFPEAVEQLASEAGLEVPKADPRTQARAREAQSLGDV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + L + YL RG+ IE F LG++ D R L + LR G + Sbjct: 114 LNLVQESYRRRLYRPEGREGLAYLRGRGLTEETIERFGLGWSGDGRQ-LLDELRPHGVTV 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E +I AG++ + A + F NR+ FPIR RG++++FG RTL KYLN PET Sbjct: 173 EMLIRAGVMRVDEQGAPKGELFFNRVTFPIRDRRGRMMSFGARTL-GDGQPKYLNGPETA 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K + L+N A + + + +++VEGYMDV+++ QAG V+ LGT Sbjct: 232 LFSKRRTLFNLDLAREAVHR----------GADLVVVEGYMDVIAMDQAGFGGAVAPLGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+ E QL LLW++SP +LC DGD G RAA + ++ L L P + F L +DPD Sbjct: 282 AMGEEQLELLWRMSPSPILCLDGDAAGARAALRVCEVSLPLLSPERTIRFCRLDPKDDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S IR G A ++ + + + + L+ T PD+RA L L I D+ L Sbjct: 342 SLIRSRGPRAMQEALSGATSMAEELFGLLTAGLVDPGPDQRAALREKLVALSRLIPDKAL 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + D F++ T G + + + L Sbjct: 402 ASEYRSTLLDMFFARFRRKKTFQRKGGESLPLSTQAPGAMRDVESGNLERLN-------- 453 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537 + L++HP IL E Q + + + EL +L S L +++ E Sbjct: 454 -----IMTAMLLHHPDILPEVEQAYSGLHLPS-ELDRLRSALLDWSCQEEERDGLTEESC 507 Query: 538 HQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L E G +L ++ R G E VDV + + AL + Sbjct: 508 MSWLEEHGLADLAGRVKGGPLPRSVGDGKVKDEILKVDVIESWWHFYALVNFQTF----E 563 Query: 596 EEIEKQIAQVTAKGEAEKT 614 +E+ + + +G+ E Sbjct: 564 RTLEEDVTRAVIEGDMEPF 582 >gi|303233670|ref|ZP_07320324.1| DNA primase [Finegoldia magna BVS033A4] gi|302495104|gb|EFL54856.1| DNA primase [Finegoldia magna BVS033A4] Length = 599 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 279/632 (44%), Gaps = 46/632 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I ++ I ++IG YV+ R +N Y CPFH+EKTPSF + SKG + Sbjct: 8 IPQDKIDEIKSVADIVSVIGDYVELKRSGSN-----YIGLCPFHNEKTPSFSVSPSKGIF 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD +SF+ G S+ E+++ LA G+ L + ++K + + L + Sbjct: 63 HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFAINN 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FF+ +L + + + + D + SL HL +KG+ ++ Sbjct: 122 EAKLFFYKNLLINDVPKEYIKKRDLTNSMINKFIIGYA---DGKNSLYRHLLKKGYQKDD 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 IIE GL + +D+FRNRL+FPI RG +I FGGRTL KY+NSP+++ + Sbjct: 179 IIEVGLANQDERGNI-FDKFRNRLMFPIIDIRGNIIGFGGRTL-ADAKAKYMNSPQSLAY 236 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K KN+Y N + IILVEGYMDV+SL G ++SLGT+L Sbjct: 237 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDFAIASLGTSL 285 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ + I +C+DGD G A +AI + N +++ DPD + Sbjct: 286 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIQV---FKEIDISPNIIVIPDNLDPDDY 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ YG +F KLI ++ + +K+ + N E+ +L L ++ + +R Sbjct: 343 IKKYGNESFNKLIDNAMDSIIYEYKKILKKYDINDVKEKIQLIDDLTTLLSKLDRAVIRD 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + LQ T+ S K N + ++ +L + + Sbjct: 403 EYIKKFAEDLQIDDNSLRTDVSDKLSVAKPNISVNREVTEYSDVLDINLQEKITAI---- 458 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 ++ + I + ++++ + D F + +++ +E Sbjct: 459 ---EIMTIACFYRDIYETIKEDVSKFKTDIIYYNNFMEFADNYYLKNNEKEIDE------ 509 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ + + + L + L++++K++I++Q+ Sbjct: 510 ----NSVRDYFKNDIQMDRTIDYLYNTSRNSININSIDRVILEIKKYLITQEKDKIKQQL 565 Query: 603 AQVTAK--GEA--EKTAILISILHEVHIQIHQ 630 + + + +K +++ + E++ Q+ + Sbjct: 566 DLMQSVDFNDKINQKYKEILNKILEINRQLKE 597 >gi|322373397|ref|ZP_08047933.1| DNA primase [Streptococcus sp. C150] gi|321278439|gb|EFX55508.1| DNA primase [Streptococcus sp. C150] Length = 603 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 150/644 (23%), Positives = 257/644 (39%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MAIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVTIDAPRQAQQQHSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G +PD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGETARAYLYERGMTDDLLKAFQIGLSPDEPDYLYQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E S +D F+NR++FP+++ G+ I F GR +K KY Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEAIEQGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGQVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD G A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTLRNQQTAQLSAAGNSSYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + D + EL++L+ L D Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-DDFFFQTAELEELYQLLKQD 517 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ L +++ E ++ +V+ ++ Sbjct: 518 G-------------QIDTVALSVLPQEVQTAYYQVLEEILPPETSLEEVQAIEERRNHFL 564 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + KQI + + G+ + + +L + Sbjct: 565 RELDFRKQ-----SKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|222111656|ref|YP_002553920.1| DNA primase [Acidovorax ebreus TPSY] gi|221731100|gb|ACM33920.1| DNA primase [Acidovorax ebreus TPSY] Length = 658 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 169/677 (24%), Positives = 280/677 (41%), Gaps = 76/677 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK F Sbjct: 7 SIPQSFIQELLARVDVVDVVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQ 114 ++CF C G+ + FL G F E+VQ LA G+ +P + + + + Q Sbjct: 62 FHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQIGMQVPDDENTSPQDRERAAAQRQKQ 121 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A D + L+ + R Y RG+ + + LGYAP+ L Sbjct: 122 ATLTDVLEKAGDAWRRHLRES--PRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVF- 178 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + E+GL+I D YDRFR+R++FPIR+ +G+ I FGGR L + KYL Sbjct: 179 -PEYDSPLLEESGLVIVNDEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY + A N ++ + ++ EGYMDV++L Q G N Sbjct: 237 NSPETPVFHKGRELYGLYEARNAIR----------EHGYALVTEGYMDVVALAQLGFPNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T + L++ + +V FDGD G RAA KA+D L + V F+ L Sbjct: 287 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLP 346 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R YG AF + + +++PL L + E T + RA + + + Sbjct: 347 AEHDPDSFVRAYGPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAA 406 Query: 415 IKDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + D L+ + + L QL+ + + + P + Sbjct: 407 LPDGALKRQLLTELGELGQLPAPDLAQLWAQDSPRPGSAAHPPAHDGAPFGDEPPWGQEP 466 Query: 468 QSSLVKGKLSKKPSLREA--------------------------------ALLLTLINHP 495 +P+ R L++H Sbjct: 467 PGMEYGSPAGGEPARRWRKGGEWKGGRWRREEQRPPQPPLPRRPLTGRADHAARLLLSHM 526 Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 L+E E + D L+ +L E + + L L +++ Sbjct: 527 EFLEELSHEDHTLLCDQPAPHGALFVWLEGQLHEHGPQSWAVLREALAGHDCQALAERVM 586 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A TE + ++R + L + Q+ + +Q A E+ Sbjct: 587 TGS------HAQTEGDETELRAELRGLLNRML-IEAIKLQQNALIAAASQDPAA--IERY 637 Query: 615 AILISILHEVHIQIHQI 631 L + + ++ Sbjct: 638 RQLQERRRALEEGLTKM 654 >gi|270158973|ref|ZP_06187629.1| DNA primase [Legionella longbeachae D-4968] gi|289166184|ref|YP_003456322.1| DNA primase [Legionella longbeachae NSW150] gi|269987312|gb|EEZ93567.1| DNA primase [Legionella longbeachae D-4968] gi|288859357|emb|CBJ13293.1| DNA primase [Legionella longbeachae NSW150] Length = 572 Score = 328 bits (840), Expect = 2e-87, Method: Composition-based stats. Identities = 152/609 (24%), Positives = 269/609 (44%), Gaps = 51/609 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EK+PSF+ K FY Sbjct: 5 IPQPFIDDLLQRTDLVELIDSYVPLKKRGN-----SHVACCPFHNEKSPSFNVVAKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ F+++++ LA G+ +P K +KE DL +L+ Sbjct: 60 HCFGCGASGNAISFVMKYFNQGFVDAIETLATRIGLTIPRE--KQTEKENTSRDLYKLLS 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + LK+ + YL ERG+ ++++LG+A + ++L + ++ + Sbjct: 118 AVSLHYRKKLKHE-GQPAINYLRERGLSGEVAKLYQLGFATEGWHNL---EKAFPRNQRE 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +I G+LI YDR+RNR++FPI G++I FGGR L + KYLNSPET++F Sbjct: 174 LIATGMLIKN-EDGKIYDRYRNRIMFPIHDRHGRIIGFGGRVLDSEQKPKYLNSPETVIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ S II+VEGYMDV++L Q + NVV++LGTA Sbjct: 233 QKSRELYGLHQ----------VLSQQKSIDSIIIVEGYMDVIALAQHEIINVVATLGTAT 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + Y ++LL K + ++ CFDGD+ G +AA++ ++ L HL G V+F+ L G DPDS Sbjct: 283 STYHIQLLSKHAKSLIFCFDGDNAGKQAAWRGLESSLPHLNLGLDVSFMFLPDGHDPDSL 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F I +++PL + +++ + P + +L K + + + + Sbjct: 343 VRKEGKEHFLNQIKQAIPLNRFFFDSLSKDLNLLRPAGKTQLINLAKPFLQKMSEGSYKQ 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + + + P Sbjct: 403 LLIGDLARLTHIEPHRLNQLITDQTKNPSPEPMMTLTRTPM------------------- 443 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ HP I + ++ +D E + L L + + + Sbjct: 444 --RIAVALLLQHPEIYTQSMLQMKPELFDAQEHEILLK-LLNQLASNPKANTATLIEAWR 500 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTE-------ANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + +L E + +Q + ++ L +K Sbjct: 501 NHPYFDFINKLAAWEHQVPEPELVKEFIDIMFFLQKQNRELTIRQLINKSRQHGLNEAEK 560 Query: 596 EEIEKQIAQ 604 ++++ + + Sbjct: 561 FKLQEMLKE 569 >gi|257876549|ref|ZP_05656202.1| DNA primase [Enterococcus casseliflavus EC20] gi|257810715|gb|EEV39535.1| DNA primase [Enterococcus casseliflavus EC20] Length = 612 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 152/641 (23%), Positives = 280/641 (43%), Gaps = 41/641 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I D+ I +++GQYV + N Y+ CPFH+EK+PSF + K Sbjct: 3 RIPQTVIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ FL L G SF E+V ++A + +PL I + + LI Sbjct: 58 FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A + +HH L A + YL +RG+ IE F +G+AP+ R L + + Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEK 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232 E + GL + ++ + DRF R++FPIR+ +G+ I F GR L+ + K Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPETILF+K + L+NF A ++K + L EG+MDV++ QAG++ Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVIAAWQAGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N ++S+GT+LT Q+ + +++ ++LC+DGD G+ A + IDL+ +++ V Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGVEATNRGIDLL--QNNSRLKLSVVR 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + DPD ++R YG AF KL V + NR+ E+ + + Sbjct: 345 VPERMDPDDYLRKYGTEAFYKLAVHGKETVFAFKMDYHRANRNLANEKEQLDYVQVVLKE 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + + + Y + + + + + + M + Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQQPRQDAPPPAPTTNNPMVFTP 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + K + LLL + H + L +++ + I + ++ Q+L+ + +++ Sbjct: 465 PTRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA-SGISFIHDRYQQLYLLFDAYMETEEH 523 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 F+ + L E +++ + + + Q + + + Sbjct: 524 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 571 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + + Q + KG + L + ++ ++ Q + Sbjct: 572 AEEINQKRIQQQEARQKGNQQLELELAIEIIDLTKRLKQAK 612 >gi|325571156|ref|ZP_08146728.1| DNA primase [Enterococcus casseliflavus ATCC 12755] gi|325156241|gb|EGC68427.1| DNA primase [Enterococcus casseliflavus ATCC 12755] Length = 611 Score = 328 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 148/641 (23%), Positives = 276/641 (43%), Gaps = 42/641 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I D+ I +++GQYV + N Y+ CPFH+EK+PSF + K Sbjct: 3 RIPQTIIDDIRERSNIVDIVGQYVQLKKSGKN-----YFGLCPFHNEKSPSFSVAEDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C G+ FL L G SF E+V ++A + +PL I + + LI Sbjct: 58 FHCFGCGRGGNVYGFLQELEGISFPEAVVKVAEMNDIPLDPQYQQSEGINEATSQTSQLI 117 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A + +HH L A + YL +RG+ IE F +G+AP+ R L + + Sbjct: 118 ALHEKAAEVYHHMLVNTAAGQEALDYLLDRGLTMALIEEFNIGFAPNERSFLEKVFLNEQ 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVK 232 E + GL + ++ + DRF R++FPIR+ +G+ I F GR L+ + K Sbjct: 178 AKAEFFPDTGLFVQRNDG-SLADRFYQRIMFPIRNPQGKTIGFSGRWLASEKVGDQDQPK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPETILF+K + L+NF A ++K + L EG+MDV+S QAG++ Sbjct: 237 YLNSPETILFNKREVLFNFDKARRAMRKD----------GQVYLFEGFMDVISAWQAGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N ++S+GT+LT Q+ + +++ ++LC+DGD G+ A + I+L+ +++ V Sbjct: 287 NGIASMGTSLTNQQIAHIERVAQEVILCYDGDSAGVEATNRGIELL--QNNSRLKLSVVR 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + DPD ++R YG AF KL V + NR+ E+ + + N Sbjct: 345 VPERMDPDEYLRKYGTEAFYKLAVHGKETVFAFKMDYHRMNRNLANEKEQLDYVQVVLNE 404 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + + + Y + + + + + ++ + Sbjct: 405 LQRVDSLLEQDRYLTQLSTEFNLSRETLQQQLKQNRQEQRTMQDVAPPPPTDTPVVFTPP 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + + LL L + + + I + ++ Q+L+ + +++ Sbjct: 465 TRQQPKTQVEKAQELLLYRLFHDSTLNHRFRA--SGISFIHDRYQQLYLLFDAYMETEEH 522 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 F+ + L E +++ + + + Q + + + Sbjct: 523 FVLAKFLDFLKEDSMKKMVIDIADL------------KASEEGTEQEFQDILQVFQKSGI 570 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + + Q + G + L + ++ ++ Q + Sbjct: 571 AEEINQKRIQQQEARQIGNQQLELELAIEIIDLTKRLKQAK 611 >gi|329963065|ref|ZP_08300845.1| DNA primase [Bacteroides fluxus YIT 12057] gi|328529106|gb|EGF56036.1| DNA primase [Bacteroides fluxus YIT 12057] Length = 713 Score = 328 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 159/704 (22%), Positives = 287/704 (40%), Gaps = 101/704 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I++++ +V +R N Y CPFHD+KTPSF+ + SKG Sbjct: 12 IDQATIDRILDAAQITDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPSKGLC 66 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 67 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKIAQSERESLFIV 126 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + L+N D R Y RG IE F+LGY +S +L + QKG+ Sbjct: 127 NSFARDYFRNILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAQEALQKGY 186 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 ++ +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 187 KKDFLLKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 245 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 246 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 295 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 296 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 352 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F++ I ++ + P +RAEL +L I+ I Sbjct: 353 GDDPDSFARKHNATEFQEFIQKNETDFIRFKANLLLEDAGKDPIKRAELISNLVQSISII 412 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---------------- 459 + +R Y + L+ + ++E + + R + Sbjct: 413 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKQAERAERERRSANAARANAEAG 472 Query: 460 -----KGPSQRLMQSSLVK----------------------------------GKLSKKP 480 P+Q S GK ++ Sbjct: 473 ITDGGNAPAQVPAGDSQPSGTYPPEAFPPSGFPPEEAVPFPPSDDYVSFIPQDGKEGQEF 532 Query: 481 SLREAALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSF 521 E +L L+ + + + +L ++ + N +++ S Sbjct: 533 YKYERLILQMLVRYGERVMCKVPNGEGQEIPVTVTEYIINDLKEDELAFHNPLHRQILSE 592 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + +L +L + Sbjct: 593 AAERIHNEGFIAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPR 651 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 L + ++ ++S + + I + + + ++ +E+ Sbjct: 652 LMINFKYAIVSEELKHIMFALQDPAVINDETQCNSIMKRYNELR 695 >gi|159903246|ref|YP_001550590.1| DNA primase [Prochlorococcus marinus str. MIT 9211] gi|159888422|gb|ABX08636.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT 9211] Length = 679 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 166/669 (24%), Positives = 299/669 (44%), Gaps = 65/669 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RIHPHTIEAVKERADIVDVVGEHVVLKKKGK-----EFVGICPFHDDSKPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDL 117 YYCFSC G+ + FL SFI+ V LA +P+ ++ + +K + +L Sbjct: 60 YYCFSCGAGGNSIKFLMEFQRESFIDVVLGLARKYQLPIETLEGPQQERLRQKLSRRDNL 119 Query: 118 IRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++++A +F L+++ +Y L++R +D I+ F+LG+AP++ L HL Sbjct: 120 YKILDLAKGWFQDRLRSSEGALAFNYLLEKRRLDRGIIDQFELGFAPNAWDGLLRHLNHV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + S+E + AGL+I + YDRFRNRL+ PI+ +G+VI FGGR+L + KYLN Sbjct: 180 ENISQELLEAAGLIIPRKSGDGFYDRFRNRLMIPIKDRQGRVIGFGGRSLDGTDP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A N ++K + ++ EGY DV++L AGV N V Sbjct: 239 SPETEVFEKGKHLFALDKATNLIRK----------NDKAVVAEGYFDVIALHAAGVTNAV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVL 352 +SLGTAL+ +Q+ L + + RIVL FD D+ G+RAA +AI+ V + G + + Sbjct: 289 ASLGTALSSHQVTQLCRCTDSKRIVLNFDADNAGIRAANRAINEVEHLAMQGQLELRVLH 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L G+DPD +++ ++ L+ ++ +D + ++ D + L + Sbjct: 349 LPSGKDPDEYLQENSVADYKALLDKAPLWIDWQIDQVFKDLDLTKADHFQLVVSGLVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR YY Q + +RL + + R K R Q + L Sbjct: 409 GKLPPSALRTYYLQKVSERLSGGQARVALQLEDDLRKQVKGQRWHGQ--------STRLE 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE- 528 K + EA +L ++ P+ +EL + + + LWS + Sbjct: 461 KPGEASLRERNEAEILRLYLHCPSQRANIRRELRQRELEDFALHHHRLLWSSISDIEESN 520 Query: 529 ---------------QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 E+ + L ++ + L + A + Sbjct: 521 LGMTLLESICRGDAPGDELSLIELPRLLLDQFTADNNDLLSSRFTPLLELGEVQMAAMKT 580 Query: 574 VRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQV--TAKGEAEKTAILISI 620 + LA+ +R + L R + E +E IA + + + + + + + Sbjct: 581 PIPYLRGTLAVLERHKSLRRCRHLIEAWSGQRLETLETCIAALLEQEQNQPDLSFEMEAR 640 Query: 621 LHEVHIQIH 629 + E+ +++ Sbjct: 641 IDEMFNELN 649 >gi|297588503|ref|ZP_06947146.1| DNA primase [Finegoldia magna ATCC 53516] gi|297573876|gb|EFH92597.1| DNA primase [Finegoldia magna ATCC 53516] Length = 598 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 159/634 (25%), Positives = 287/634 (45%), Gaps = 43/634 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I ++ I ++IG YV+ R +N Y CPFH+EKTPSF + SKG + Sbjct: 4 IPQDKIDEIKSVADIVSVIGDYVELKRAGSN-----YVGLCPFHNEKTPSFSVSPSKGIF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD +SF+ G S+ E+++ LA G+ L + ++K + + L + Sbjct: 59 HCFGCGVGGDVISFIMQKEGLSYPEAIKFLADKLGI-LVETNEVNKEKYEHRKKLFEINN 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F++ +L + ++ ++ + + D + SL HL QKG+ ++ Sbjct: 118 EAKLFYYKNLLINDIPK---EYIKKRNLNNNLINKFIIGYADGKNSLYRHLLQKGYQKDD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 IIE GL I+ D YD+FRNRL+FPI RG VI FGGR L KYLNSP+++ + Sbjct: 175 IIEVGL-INQDEKGNVYDKFRNRLMFPIIDIRGNVIGFGGRAL-AEARAKYLNSPQSLAY 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K KN+Y N + IILVEGYMDV+SL G ++SLGT+L Sbjct: 233 DKSKNVYGVSNLKNSTK-----------VGKIILVEGYMDVISLTNYGFDYAIASLGTSL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +L+ + I +C+DGD G A +AI++ N +++ DPD + Sbjct: 282 THDQAKLIKRYCKNIYICYDGDSAGQNATSRAIEI---FKEQDISPNIIVIPDNMDPDDY 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ YG +F +LI ++ V +K+ + N E+ +L L ++ + + +R Sbjct: 339 IKQYGNESFNRLIDNAMDSVIYEYKKILQKYDINDVKEKIQLIDDLTTLLSKLDREVIRD 398 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + D L + + + K N +++ + + K ++ + + Sbjct: 399 EYIKKFSDDLNIEYVSLKKDVYNKLKETKPNVNFHNERTEDNQNTE----KDSINNQEKI 454 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 ++ H I + +E + + + F+ + + ++ Sbjct: 455 TAIDIMTIACFHKDIYYDLKEEFSKFKTKISSYNNFMEFVDFYYSKNNE-------NQID 507 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E+ + K + R + +I + L + L++++K+ I+ Q+ Sbjct: 508 EKAARDYFKNDIQMDRTIDYLYQKSRYSININN---IGRVVLEIKKYLMTQEKDNIKSQL 564 Query: 603 AQVTAKGEAE----KTAILISILHEVHIQIHQIE 632 + + E + +++ + E++ QI + + Sbjct: 565 DLMQSVEFNEKINKEYNEILNKILEINRQIKEYK 598 >gi|329957254|ref|ZP_08297774.1| DNA primase [Bacteroides clarus YIT 12056] gi|328522967|gb|EGF50070.1| DNA primase [Bacteroides clarus YIT 12056] Length = 696 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 156/697 (22%), Positives = 289/697 (41%), Gaps = 93/697 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSNEEKLAQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F + L+N D R Y RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NQFARDYFQNILRNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAMAQEAIKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +I+ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLIKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F + I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFRQFIQEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--------------- 460 + +R Y + L+ + ++E + + + ++ Sbjct: 403 PEAIVRDVYIKECAQLLRVEDKLLVSEVAKRREMQAEKRAEQTERERRAAARNNMEATAA 462 Query: 461 --------------------------------GPSQRLMQSSLVKGKLSKKPSLREAALL 488 P + +GK ++ E +L Sbjct: 463 QVPYTEGDAALATADGTSLPPDMAAEYADSPIPPEDNYVSFIPQEGKEGQEFYKYERLIL 522 Query: 489 LTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + +++ +L ++ + N +++ + + + Sbjct: 523 QMIVRYGEKIMCNATNEEGQEVPVSVIEYVINDLKQDELSFHNPLHRQILTEAATHIHDA 582 Query: 530 KYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + ++ + +R + + AL + ++ Sbjct: 583 GFTAERYFLAHPETTISKLSVELISNRYQLSKYHSKSQKIVTDEERLYELVPALMINFKY 642 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++S + + + + + EK ++ E+ Sbjct: 643 AIVSEELKHMMSALQDPAVANDEEKCNAIMKRYCEMR 679 >gi|322376486|ref|ZP_08050979.1| DNA primase [Streptococcus sp. M334] gi|321282293|gb|EFX59300.1| DNA primase [Streptococcus sp. M334] Length = 567 Score = 327 bits (838), Expect = 3e-87, Method: Composition-based stats. Identities = 146/590 (24%), Positives = 246/590 (41%), Gaps = 35/590 (5%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 8 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 62 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G F+E+VQ L G+ + +K L + E Sbjct: 63 CFGCGRSGDVFKFIEEYQGVPFMEAVQILGQRVGIEVEKPLYSEQKPVSPHQALYDMHED 122 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F++G AP R L + L + E+ Sbjct: 123 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHFRIGLAPPERNYLYQRLSGQYRE-EE 181 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETI 240 +++GL + D F NR++FP+ + +G+VIAF GR K +S KY NS T Sbjct: 182 FLDSGLFYLS-EANQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTA 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K LY+ A K +S I L+EG+MDV++ +AG++N V+S+GT Sbjct: 241 IFNKSYELYHMDRAKKSSGK----------ASEIYLMEGFMDVIAAYRAGIENAVASMGT 290 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL+ + L +L+ ++VL +DGD G A KA+D I V V + DPD Sbjct: 291 ALSREHVEHLKRLTKKLVLVYDGDKAGQAATLKALD-----EIGDMPVQIVSMPDNLDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ G L+ ++ + + + + + E + I K Sbjct: 346 EYLQKNGPEDLAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSITA 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + D L I + R ++ R P+ + K Sbjct: 406 QNSYIHILADSLASFDYAQIEQIVNESRQAQRQNRMEGISKPTPIT----MPVTKQLSAI 461 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA LL ++ P ++ Y+ D +D E Q L+ L + + E + Sbjct: 462 MRAEAHLLYRMMESP-LVLNDYRLREDFAFDTPEFQVLYD-LLGQYGNLPPEVLAEQKEE 519 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + L + L ++ L +E + + Q K+ Sbjct: 520 VERAWYQVLAQDLPAEMSPQEL----SEVEMTRNKALLNQDNMRIKKEGA 565 >gi|312876450|ref|ZP_07736434.1| DNA primase [Caldicellulosiruptor lactoaceticus 6A] gi|311796808|gb|EFR13153.1| DNA primase [Caldicellulosiruptor lactoaceticus 6A] Length = 618 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 136/626 (21%), Positives = 258/626 (41%), Gaps = 51/626 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L I I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 33 ERVVEQVLSKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 87 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 88 FGCGVGGNVIHFVMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 147 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L ++ Y+ +RGI + F LG+ P++ ++ Sbjct: 148 HDCFEYFQSQLYLRKNIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEILSKKYSKEII 207 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + ++ KY+NSP+T++ Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSADI---LYQNGLMVRVMELENAKDPDE 368 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + + I ++ Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFKFVREYFENILMPITNEVE 428 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + E + + + + Q+ + + Sbjct: 429 RQEYVKKLSQITQIDEDVILKEFTKNMQTQLRRIENIQHFKQVQQTKTLTDTERLRKNDI 488 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL I + +++ + +++ L++ + + E + Sbjct: 489 -----YLLSLYIEWAQKSENIKNIVSEEDFYTEDIKLLFNSIKNLIDEGMELTYSMLLSF 543 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E E+L +L + I +++ + +++ Sbjct: 544 ITEE---EILSELTSFSSKGFESEEAVKKAIEELKITSKTL---------------WLKQ 585 Query: 601 QIAQVTAKGEAEKTAILISILHEVHI 626 ++ + +G+ +K L L + Sbjct: 586 ELLEAQKRGDIQKAMQLQIELKTLKA 611 >gi|225873433|ref|YP_002754892.1| DNA primase [Acidobacterium capsulatum ATCC 51196] gi|225793960|gb|ACO34050.1| DNA primase [Acidobacterium capsulatum ATCC 51196] Length = 590 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 262/637 (41%), Gaps = 59/637 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 DF +++ I +IG+YV + ++ CPFH EKTPSF + + F++CF Sbjct: 3 DFAQNVKQQADIVRIIGEYVRLKKAGAQ----NFSGLCPFHSEKTPSFSVHAGRQFFHCF 58 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIE 122 C GD +F+ + SF E+V+ +A G+ LP P+ + + + LI L E Sbjct: 59 GCGQSGDVFTFVQKIENVSFPEAVRTVAQKCGIALPKREFHSPEEAAEHRQRAKLIDLHE 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK---GFS 179 A +F L++ YL +RG+D I F++GYAPDS ++LRE L+ Sbjct: 119 AAAQWFEEQLRSGEGAAARAYLAQRGLDEKGIARFRIGYAPDSFHALRERLQGMADLDTL 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSP 237 + + + + Y RFR R+ FPI + G++IAF R L GE KY+NSP Sbjct: 179 RQSGLFSWKEQEDGQPGPIYSRFRKRITFPIANEGGRIIAFTARALESGEKAGPKYMNSP 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ KG L+N A ++ + F +LVEG MD +S AG+ NV+++ Sbjct: 239 ETPLYSKGHVLFNLDKARQAIR----------EADFAVLVEGQMDCISAYLAGITNVLAT 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA TE Q RLL + S R+++ FD D G AA K+I L G V V L G Sbjct: 289 SGTAFTEMQARLLARYSKRVIVNFDPDTAGANAAEKSIGL---LTEEGFEVKIVTLDGGL 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD FIR G A+ + + + L +R +P+ + + L I + + Sbjct: 346 DPDRFIRENGVRAYMDALRTARRYQEYLIERARVQFPPRSPEAKVKALNFLLPHIRRVPN 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSG--YGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R ++ L E R + +++++ + Sbjct: 406 AIARNEFATDAAQSLGIDSSLMREELKQAVAKRRDFVASAQAYPLTRAEQILLMAFAAAP 465 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 S+ E L H +++ + L Sbjct: 466 GSEARHTAE----AALARHSEDFARIREDVQQMV-----------HLLRAREAGIDP--- 507 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + E ++L L V DA SA EA + L R L +Q+ Sbjct: 508 --LAAMQEPQQKQMLASLFVSVHDAEPASAEVEAAM------------LTVRRLALEQQQ 553 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 E+ I + G E L E+ ++ +++ Sbjct: 554 RELRGSILEAERTGRMEDALQLTRHAQEITRRLRELD 590 >gi|88801525|ref|ZP_01117053.1| putative DNA primase [Polaribacter irgensii 23-P] gi|88782183|gb|EAR13360.1| putative DNA primase [Polaribacter irgensii 23-P] Length = 667 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 155/656 (23%), Positives = 263/656 (40%), Gaps = 77/656 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I + + +IG++V + +N + PF DEK+PSF + K + Sbjct: 2 ISRSTIDRVFESARVEEVIGEFVQLKKAGSN-----FKGLSPFVDEKSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ +SFL ++ E+V+ LA + + + E+K + + + + Sbjct: 57 KDFSTGKGGNTISFLMEHEHYTYPEAVKWLAKKYNIEIEETEQSSEEKAQMNERESMFLV 116 Query: 121 IEVATDFFHH-SLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+FH L + + K + Y ERG I+ F+LGY D + + KG+ Sbjct: 117 STFAKDYFHDVMLNSNKGKAIGLSYFKERGFKDETIKTFELGYCLDEWDAFTKAALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + GL I +DRF+ R++FPI S G+++ FGGR L+ + KYLNSP Sbjct: 177 DLKYLASTGLTIV--KENRQFDRFKGRVLFPIHSMSGRILGFGGRILTADKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K LVEGY DV+S Q G++NVV+S Sbjct: 235 ESDIYHKSKILYGLFQAKKEIAKQ----------DNCYLVEGYTDVISFHQTGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTAL+ Q+RL+ +L+ I + FDGD G+RA+ + IDL L G V V GE Sbjct: 285 SGTALSADQIRLVNRLTKNITVLFDGDAAGIRASIRGIDL---ILEQGMNVRVVQFPDGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + A +K + ++ S N P ++A + + I+ I D Sbjct: 342 DPDSFAKSHTTEALKKYLEDASQDFINFKVSLLLKESNNDPVKKAGVIRDIVMSISKIPD 401 Query: 418 QKLRYYYSQAIRDRL----QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-- 471 R Y Q + + LF + + K +R ++ S Sbjct: 402 GIQREVYVQECARIMEISERVLFSELAQIITKGNFEKSKASRQQNSVKQDPNEPPSEYFL 461 Query: 472 -------------VKGKLSKKPSLREAALLLTLI-------------------------- 492 V + S+ E ++ L+ Sbjct: 462 AQENAQMGLVKGGVSSAAVDQISILEKEIIRILLLFGNEETEFIEEVETEDDHGKVITTA 521 Query: 493 --NHPAILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + E Y L + + N Q+++S + + + + + Sbjct: 522 RKYNNNVSAEIYVHLQDDETEFTNAIFQEIYSEVIHQLNQFEKVDIDALVNHENSEISAA 581 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQ 601 + L + + + + + + R L+ ++ EE+ KQ Sbjct: 582 VTSILMDEEKHQLSNWGGQNIEVKTALEILPKLVNDAVFNLRRVLIGKKIEELVKQ 637 >gi|312867747|ref|ZP_07727953.1| DNA primase [Streptococcus parasanguinis F0405] gi|311096810|gb|EFQ55048.1| DNA primase [Streptococcus parasanguinis F0405] Length = 592 Score = 327 bits (838), Expect = 4e-87, Method: Composition-based stats. Identities = 140/632 (22%), Positives = 259/632 (40%), Gaps = 48/632 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ I ++ + I +IG+ V + N + CPFH EKTPSF+ + K FY+ Sbjct: 3 DKELIAEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLIE 122 CF C GD F+ G +F+++VQ +A AG+ L P +L + + Sbjct: 58 CFGCGRSGDVFKFIEDYRGVAFMDAVQIVADKAGIALQYQARPAQPASANPNQELYEIHQ 117 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A+ F+ L + +YL ERG+ I F+LG +P L +L +K + Sbjct: 118 EASKFYQAILMTTKMGEEARHYLHERGLTDEVIRHFQLGLSPAEGNYLYRNLSEKFSEKV 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----GESVKYLNSP 237 I ++ T +D F++R++FP+ G+VIAF GR KY NS Sbjct: 178 ITDSGLFTIS--DAGTVFDAFQDRIMFPLTDDSGRVIAFSGRLWKMTEDGSHQAKYKNSR 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 T LF+K LY+ A +K + ++EG+MDV++ +AG++N V+S Sbjct: 236 STRLFNKSYELYHLDQAKTSAKKQ----------HEMYIMEGFMDVIAAYRAGIENAVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT ++ L + +++L +DGD GL A KA+D++ + V + Sbjct: 286 MGTALTPEHVQHLSYFTKKVILTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 340 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ L+ S + + + E L I + Sbjct: 341 DPDEYLKKTSPEDLATLLKNSRISKVEFLMHYWKPQYIENLQAQIEFVEKLAPMIAQTRS 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + D L I + R ++ + + L ++ Sbjct: 401 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEAQEGGRSKTSTFSVELLPNRGMT 460 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E LL + + P +L + + D +D ELQ L+ L + +++ Sbjct: 461 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFAFDTPELQILYQLLC----QNGEVTSQDL 514 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ + + E ++ G + + + LL ++ ++ Sbjct: 515 SEQ--------------PEGVQHAWYRMLEEDLPEEIADGELEEVEATRNRELLRKESQQ 560 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I ++ + ++ G+AEK + + L ++ Sbjct: 561 IGNKVKEASSIGDAEKALLELERLIAQKRRME 592 >gi|194476718|ref|YP_002048897.1| DNA primase [Paulinella chromatophora] gi|171191725|gb|ACB42687.1| DNA primase [Paulinella chromatophora] Length = 681 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 172/675 (25%), Positives = 290/675 (42%), Gaps = 61/675 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + + I ++I QYV ++ ++ CPFHD+ +PS K Sbjct: 5 RLSHRTIEIIKEKVDIVDVISQYVVLKKKGR-----EFLGICPFHDDTSPSLTVAPGKQL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 Y+CFSC GD + FL + SF E V LA +P+ + ++K + L Sbjct: 60 YHCFSCGAGGDAIKFLMEIKRDSFSEIVLELAKKYQLPIETANGARQEKLRQQLSRYEQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 + +A+++F L YL E R + I+ F+LGYAP+S SL + + Sbjct: 120 HSTLALASNWFQDQLHTEVGAEALTYLKEVRSLSQDTIKRFELGYAPESWDSLFRYLSNK 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K S + AGL+I YDRFR+R+I PI + +G++I FGGR L GE KYLN Sbjct: 180 KNISSNILESAGLIISRKGKHGFYDRFRHRVIIPIHNRQGRIIGFGGRRLDGGEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK+L+ A + ++K + I+VEGY DV+SL G+ NVV Sbjct: 239 SPETEVFQKGKHLFGLHLASHSIRK----------ENKAIVVEGYFDVISLHVLGITNVV 288 Query: 296 SSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGT+L+ YQ+ + W RIVL FD D G+RA +AI + ++ G + + Sbjct: 289 ASLGTSLSSYQISQISHWSEDKRIVLNFDTDSAGIRAVQRAISALEEFILEGRIELRILQ 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L +DPD F++ + + L+ ++ +D + +++ + + A+ L + Sbjct: 349 LWGAKDPDDFVKKHSANDYLSLLNKAPLWLDWQIDQILKDKDTSKTEYFAQAVSSLVVLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +R +Y Q + +RL + + K + Q Q Sbjct: 409 GKLPQSAIRSHYIQQVAERLSNGQVRLKLRLEEDLLHQIKGETKPQYQYQQQDKFQYINE 468 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADI---RYDNNELQKLWSFLFSD-FVE 528 G K EA +L I P +EL + R+ +W+ + F + Sbjct: 469 SGSQKK----AEAEILRLYIYLPDYRTTIREELERMGWTRFTVQSYCLVWNTIKEIEFKK 524 Query: 529 QKYFLPEEIHQRLCERGFGELLK------------QLDRQVRDAGLWSATTEA------- 569 P ++L +LL LD ++ + + T E Sbjct: 525 LGTIYPTNSTEQLGAINLLQLLSDQISSLEVIPKHDLDNLMKPSEVNLITFEEPILLLRG 584 Query: 570 --NIVDVRQGYQQALAL-----YKRFRLLSRQKEEI-EKQIAQVT-AKGEAEKTAILISI 620 I+D ++ + L ++R L R + + +++I Q +K + Sbjct: 585 AVAILDRQKSIMRCRHLLEAWSHQRLETLERCIDILIKQEIRQPPGPLNMEDKIESIFLK 644 Query: 621 LHEVHIQIHQIESQE 635 L+ I+ ++ QE Sbjct: 645 LNADAIRFQELYYQE 659 >gi|223932504|ref|ZP_03624505.1| DNA primase [Streptococcus suis 89/1591] gi|302024139|ref|ZP_07249350.1| DNA primase [Streptococcus suis 05HAS68] gi|330833084|ref|YP_004401909.1| DNA primase [Streptococcus suis ST3] gi|223898775|gb|EEF65135.1| DNA primase [Streptococcus suis 89/1591] gi|329307307|gb|AEB81723.1| DNA primase [Streptococcus suis ST3] Length = 596 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 144/636 (22%), Positives = 258/636 (40%), Gaps = 50/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C GD F+ + G SF ++ LA AG V + EK+ L + Sbjct: 57 HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQTDVTPSYHQEEKRVSPHQVLYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F+LG AP + L + L + Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234 E + + YD F+ R+IFP+ G+++AF GR ++ KY Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K L+EG++DV++ + G+ N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L K +IVL +DGD G A KA+D + + V L Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A ++++ +S + + + + + E + I Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDNLQMQIEFVDKIAPIIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473 + + Y + D L + + R ++ R + + + + + Sbjct: 400 VSSITAQNSYIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL ++ HP IL E ++ D + ELQ ++ + E F Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +++ + + ++L +V + L + + LL + Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + ++I + + G A+ + L + Q+ Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596 >gi|156740278|ref|YP_001430407.1| DNA primase [Roseiflexus castenholzii DSM 13941] gi|156231606|gb|ABU56389.1| DNA primase [Roseiflexus castenholzii DSM 13941] Length = 652 Score = 327 bits (837), Expect = 4e-87, Method: Composition-based stats. Identities = 163/660 (24%), Positives = 266/660 (40%), Gaps = 72/660 (10%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67 + I I + I YV + Y CPFH + +TP+FH ++CF C Sbjct: 6 DQIKEKIDIVDFISAYVPLRKTGR-----SYVGFCPFHPNTRTPAFHVFPDTQSFHCFGC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 G FL G F E+++RLA AGV L E++++++T L+ + A F Sbjct: 61 KASGTIFDFLMRREGIEFREALERLAQRAGVQLHPRTEAEEQQDRLRTRLLEVNAAAAAF 120 Query: 128 FHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 F H L K+ R + Y+ +R ID E F +GYAPD L +L ++ + IEA Sbjct: 121 FRHMLVKSQRGEEARAYVAKRRIDDATGEAFLIGYAPDDWSLLLSYLTERRGFAPEEIEA 180 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 L + YDRFR+RL+FPIRS+ G+++AFGGR L KY+NSP+T LF KGK Sbjct: 181 AGLAIHHETRGYYDRFRHRLMFPIRSASGEIVAFGGRAL-GDVQPKYMNSPQTPLFDKGK 239 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY A + ++ S ++VEGY+DV+ Q G +NVV+ LGTALT Sbjct: 240 VLYGLDLARDAIR----------QSDAAVIVEGYVDVIIAHQYGFRNVVAPLGTALTADH 289 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI------------------PGNRV 348 + L+ KLS R+ L D D G RA K + + + Sbjct: 290 VALVKKLSHRVYLALDADTAGARATLKGLQALQSQPEGELTAVISPQGVIALQRRQDVEI 349 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + L G+DPD I+ + + + P +D + T + ++ RAE + Sbjct: 350 RILALPEGKDPDEVIQ-ENPEQWRAALAAARPAMDFYIETLTSDLDLSSGRGRAEAVERI 408 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRL 466 + I + + +Y Q + + + S R ++ + ++ Sbjct: 409 APLLTQIANPVEQAHYIQQLARLIDIEEAHILAALSNKARQEGQRRPSDQGRATKVLEQQ 468 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----------------DIR 509 + + + P +E LL +I +P ++L D Sbjct: 469 PGDANQQPDETPPPPTQEEYLLSWIIRYPTARAAVEEKLHRDLATYPALQSLMSGTIDEL 528 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + ++E + LW + P+ L L + ++V + Sbjct: 529 FTSDECRALWRAWIAAPT---GSDPQAWATTL-----YAPLDAVAQRVLELHAPQPQAYR 580 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + D + A + R +I + T + E E L+ L +V I+ Sbjct: 581 IVNDALEC-----ATILQRDAAKRWLVQIARMQTAATGEAEQEI---LLDQLVQVKQFIN 632 >gi|192361440|ref|YP_001981273.1| DNA primase [Cellvibrio japonicus Ueda107] gi|190687605|gb|ACE85283.1| DNA primase [Cellvibrio japonicus Ueda107] Length = 694 Score = 327 bits (837), Expect = 5e-87, Method: Composition-based stats. Identities = 162/513 (31%), Positives = 247/513 (48%), Gaps = 19/513 (3%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++ V R N Y ACCPFHDEKTPSF + K FY Sbjct: 5 IPQSFIDDLLDRVDIVDVVDSRVKLKRSGKN-----YSACCPFHDEKTPSFTVSPEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 YCF C G+ L F+ SF E+V++LA I G+ +P K+E+ + + L Sbjct: 60 YCFGCGASGNALGFVMDYERLSFPEAVEQLARITGLEVPREVQSEAEAKREQEKKSIYSL 119 Query: 121 IEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +E A DF+ H L+ K YL RG+D + + +G+AP +L + L Q Sbjct: 120 LEKADDFYQHQLRQHPSKHLAVNYLKGRGLDGKTAKTYGVGFAPPGWDNLLKTLGQDDDD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +I+ G+LI + YDRFR+R++FPIR +RG+VI FGGR L + KYLNSPET Sbjct: 180 KHLLIQGGMLIHQEQEKKLYDRFRHRIMFPIRDTRGRVIGFGGRVL-GDDKPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A ++ R +++VEGYMDV+SL Q G+ V++LG Sbjct: 239 PVFHKGQELYGLYEARLAYRELPR----------LLVVEGYMDVVSLAQFGIGYGVATLG 288 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA L +K + +V CFDGD G AA +A+D L + G V F+ L GEDP Sbjct: 289 TACGPDHLDRAFKYTSEVVFCFDGDKAGRSAALRALDAALETMADGRAVKFLFLPEGEDP 348 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ +R G FE +I ++PL D L+ E + T + RA ++ + Sbjct: 349 DTLVRQIGPDKFEHMIELAVPLEDYLFDAVAEGLNIRTMEGRATFSKRAAPLLDRLPKGV 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + R + + + ++ + + ++ K Sbjct: 409 FRELMFENLATRTGLNRRLLDELIADQKAKGEDFISTATREAGPHTSGHPAPGEERIPKV 468 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN 512 R+ + + P +E + Y + Sbjct: 469 TLPRQEPVWFSAPQLPEPSGHIVEEAPPVDYQH 501 >gi|297617786|ref|YP_003702945.1| DNA primase [Syntrophothermus lipocalidus DSM 12680] gi|297145623|gb|ADI02380.1| DNA primase [Syntrophothermus lipocalidus DSM 12680] Length = 595 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 162/599 (27%), Positives = 269/599 (44%), Gaps = 34/599 (5%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ + I I L+ + D R+ + YW CPFH EKTPSF + K +Y Sbjct: 2 NEQLLRTIEDRIDIVELVSESTDLVRKGS-----RYWGLCPFHSEKTPSFSVSAEKRLFY 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF CHV G+ +F+ SF E+V+ LAA AG+ +K+++ + +I + E+ Sbjct: 57 CFGCHVGGNIFTFVMKRDNLSFKEAVEVLAAKAGIEYVPKSDGAKKRKRDEERIIEMNEL 116 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 A ++H LK+ + R YL+ERG+D F+LGYAPD L E+L +G+S ++ Sbjct: 117 AAAYYHQLLKSDKGARARRYLEERGVDWETAVAFQLGYAPDEWRGLLEYLISRGYSGPQL 176 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + +GL+ + YD FR+R+IFPIR+ G V+ GGR+L+ + KYLN+PET +F Sbjct: 177 VASGLIKRSPVKDSYYDVFRDRVIFPIRNKSGTVVGMGGRSLNPADIPKYLNTPETAVFS 236 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K NLY F A +++++ + ILVEGYMD + L Q G++ V+SLGTA T Sbjct: 237 KRDNLYGLFQARDHVRRL----------NEAILVEGYMDCIMLHQYGIRQAVASLGTAFT 286 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 Q RLL + R+VL +DGD G R A +A +L+ G +V V+L +DPD +I Sbjct: 287 IEQARLLRGYTERVVLIYDGDQAGQREALRAAELMS---KEGLKVEVVVLPEDQDPDEYI 343 Query: 364 RCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 GK F + I + ++ + + + E+ + + ++ Sbjct: 344 MVKGKEEFLQYIKNNKKNPMEFKLDFKLRDVEGQSLVEKLAVLHETFCDLQQVESLLELE 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + +L+ E R W++ R + + + + P Sbjct: 404 NHLAFVARKLELPENAVRRE----FRVWQRKTRSIGIIRNRNSINRYNKGDKEKFASPEF 459 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + LL ++N + ++ + + L+K + L E L Sbjct: 460 QVR-LLAKMVNDENTFKRVFETCGTKFFTDPGLRKAAALFQEKGSFHHGQLIAEAVHNLP 518 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E L +++ + + + + K R R EIE Q Sbjct: 519 E--LAATLARVE--------MVEEENWPSDHEVEKFIREVKRRKMERKWQRLLTEIEAQ 567 >gi|16330821|ref|NP_441549.1| DNA primase [Synechocystis sp. PCC 6803] gi|2494149|sp|P74143|PRIM_SYNY3 RecName: Full=DNA primase gi|1653314|dbj|BAA18229.1| DNA primase [Synechocystis sp. PCC 6803] Length = 635 Score = 326 bits (836), Expect = 5e-87, Method: Composition-based stats. Identities = 165/653 (25%), Positives = 283/653 (43%), Gaps = 49/653 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+++ I I +IG YV +R D+ CPFHDEK+PSF + +K Sbjct: 5 RLHPDTIQEIKQRIDIVEIIGDYVVLKKRGR-----DHLGLCPFHDEKSPSFSVSPAKQM 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C G+ +FL L SF + LA + + ++P +++ + + L Sbjct: 60 YYCFGCGAGGNAFNFLMELGKRSFTDVALDLARRYQIQIQTLEPAQKQELQRQLSLREQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ VA F+HH+L + + YL +R + S I+ F+LGYAP +L + + Q Sbjct: 120 YEIMAVAAGFYHHTLFQPQGQEALTYLDQKRCLSSATIQEFQLGYAPAGWETLYRYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + + +AGL+ + YD+FR+RL+ PIR +G+ IAFG RTL E KYLN Sbjct: 180 KRYPVAAVEQAGLIKARQSGTGYYDQFRHRLMIPIRDVQGKTIAFGSRTLGNDEP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHK K L+ A +QK ILVEGY DV++L ++G++ V Sbjct: 239 SPETPLFHKSKTLFGLDQAKTAIQKV----------DEAILVEGYFDVIALHESGIKQTV 288 Query: 296 SSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 ++LG AL+ Q++ L + S +I+ FD D G+ A +AI + + G + Sbjct: 289 AALGIALSRDQVQSLMRFSQSKQIIFNFDADKAGINATQRAIQEIEPLVYSGQVNLRILN 348 Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L G+D D FI K ++ L+ ++ VD ++ + ++ P + ++ + + Sbjct: 349 LPAGKDADEFIHSSAENKEIYQTLVKQAPLWVDWQIQQLLKQKNLKDPLDFEQVARGMVD 408 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + DQ R YY Q + L Q + I+ ++ P + + Sbjct: 409 ILKRLTDQNKRAYYLQLCGEILSQGDSRLISLQVNNLS-----SQLTYGDRPGKNGSRHW 463 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR--YDNNELQKLWSFL--FSDF 526 K S EA LL ++ P Q L + + + LW + ++ Sbjct: 464 QAKDPTSSLLEKAEALLLKIYLHCPQERPTIDQILTENDLLFSFAHHRLLWQKIDQVREY 523 Query: 527 VEQKYFLPEEI-----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 ++ L + G ++ L + + I + ++ Sbjct: 524 FNLDSDPDNQLPLLVQLAYLEQEGDFNSVESLFQLTETSAEDLFRANLRIPEAIAIMEKV 583 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ Q+ + +AE + H +I ++ESQ Sbjct: 584 PWESYQKHCF--------GKLQQLDPRTQAEDFRYYQEQWQKAHQEIQRLESQ 628 >gi|90407544|ref|ZP_01215726.1| DNA primase [Psychromonas sp. CNPT3] gi|90311354|gb|EAS39457.1| DNA primase [Psychromonas sp. CNPT3] Length = 581 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 166/623 (26%), Positives = 269/623 (43%), Gaps = 61/623 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKG 60 P++FI DL+ I ++I V ++ D+ A CPFH+ SF + K Sbjct: 4 RIPQNFIDDLIAQTDIVDVIDSRVKLKKQGK-----DHRASCPFHNGNNKSSFSVSTEKQ 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTD 116 FY+CF+C G+ L+F+ G F++++ LA + +P + + D Sbjct: 59 FYHCFNCGASGNVLTFIMEYDGVEFVDAIDILAEQLSIEVPREENNNATSSPTQTIDRKD 118 Query: 117 LIRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR- 174 L +++ T F+ L+ + +++ YL RG+ + FK+GYAPD +R+ Sbjct: 119 LYQIMADITHFYQQQLRQHINSEKVINYLKGRGLSGKTAQHFKIGYAPDGWDEVRKRFAT 178 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++ I L+ A SYDRFR+RL+FPI RG+V+ FGGR E KYL Sbjct: 179 SPEQEKKLIDIGMLISKSTEGAGSYDRFRDRLMFPIYDRRGRVVGFGGRVFDNSEP-KYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET LFHKGK LY + + R I++VEGYMDV++L Q GV Sbjct: 238 NSPETPLFHKGKELYGLYHVKQAYKDIPR----------ILVVEGYMDVVALAQFGVDYA 287 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTA T + L++ S I+ CFDGD G AA++A++ L +L G + F+ L Sbjct: 288 VASLGTATTADHIHTLFRHSSEIICCFDGDKAGRTAAWRALENALPYLQDGRTLRFMFLE 347 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 GEDPDSFI+ GK FE L+ E+LP D L++ + D +A+L I+ Sbjct: 348 EGEDPDSFIQKKGKQHFETLVKEALPFSDFLFQHLLTQVDMSNRDSKAKLAQLAIPLISQ 407 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + + + + L I S+L Sbjct: 408 MSESVFKEMMEERLITLLGIEKSALIKLM----------------------PKASTLSAP 445 Query: 475 KLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K SKK + + ++ HP I + + E +I+ L L + Sbjct: 446 KQSKKVTPM-RLAISLVLQHPNIAYDLPLFPEFKEIKLPG---LSLLDQLLDICRTAPHI 501 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ + ++ LKQL + + + L + + Sbjct: 502 NTGQLLEYWRDKPESRQLKQLAVW---------NNQVDEGKYEDVFLDILENFLTLH-ID 551 Query: 593 RQKEEIEKQIAQVTAKGEAEKTA 615 ++ E+++ + + E Sbjct: 552 QKIEQLKMKSRKGETLTSTEILQ 574 >gi|332827259|gb|EGK00029.1| hypothetical protein HMPREF9455_03618 [Dysgonomonas gadei ATCC BAA-286] Length = 665 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 165/682 (24%), Positives = 290/682 (42%), Gaps = 66/682 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ I +++ Q+V RR N + CPFH +KTPSF+ + +K Sbjct: 2 IDQGTIDRIMDAAQIVDVVSQFVTLKRRGIN-----FVGLCPFHTDKTPSFYVSPAKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ E+++ LA + + + E+K+ + L L Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYYEALKYLAKKYNIEIQEREFTDEQKQAYNERESLFIL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A D+F ++L N + + Y ERG IE F+LGY+ + R + + + G+ Sbjct: 117 NDYAQDYFVNTLHNHLEGKSIGLSYFKERGFREDIIEKFQLGYSLEQRDAFSQEALKNGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 E+ +++ GL I +++ DRFR R++FP+ + G+VIAFGGR L K + KY+NSP Sbjct: 177 KEDYLVKTGLAIKSEHNNQLIDRFRGRVMFPVHTLSGKVIAFGGRILKKAENTGKYVNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HKG LY F A + K + LVEGY DV+S+ QAG++NVV+S Sbjct: 237 ESEIYHKGNELYGIFFAKQAITK----------ADCCYLVEGYTDVISMHQAGIENVVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ + + + + +DGD G++AA + IDL L G + +LL GE Sbjct: 287 SGTALTNGQIRLIHRFTDNVTVIYDGDAAGIKAALRGIDL---LLEDGMNIKVILLPDGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + I + + + N P +RA L + N I+ I D Sbjct: 344 DPDSFAKKQNAESLTNYIKANEVDFMRFKTKLLLEEAGNDPIKRAALISDIVNSISIIPD 403 Query: 418 QKLRYYYSQAIRDRL----QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +R Y + L + L Q+ + Y + + L Q + Sbjct: 404 NIIRTVYIKDCSILLDVDERILVQEVTKKRLAYLEKTAPQKMEEEMRAVHNDLSQPIIHS 463 Query: 474 GK--LSKKPSLREAALLLTLINHP-AILQEQYQE--------------------LADIRY 510 E A+L ++ I+ E E + Sbjct: 464 KAVVKKTPIDKFELAILYYIVRFGMEIMLEGGDENPVTGDMPTTVIDWVKFDLQRDGFWF 523 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR---QVRDAGLWSATT 567 N + V++ + + ++ +L Q+ + Sbjct: 524 TNPLYTLMLEEAIERSVDETFIPARYFLAH-TDAQVSKIAAELVSDRYQLSKLHIKQFGE 582 Query: 568 EANIVD--------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 A D +R+ + + K ++++ +EI+ ++A +G + L+ Sbjct: 583 NAKKEDTPLAEEKHLRKDVPRIVTELKNAY-ITKRIKEIKDEMAVKQKEGNWDTAIELMQ 641 Query: 620 ---ILHEVHIQIHQIESQEAMI 638 L EV + + + ++ Sbjct: 642 QIKELEEVKKALAKALGERIIL 663 >gi|303257747|ref|ZP_07343759.1| DNA primase [Burkholderiales bacterium 1_1_47] gi|302859717|gb|EFL82796.1| DNA primase [Burkholderiales bacterium 1_1_47] Length = 649 Score = 326 bits (836), Expect = 6e-87, Method: Composition-based stats. Identities = 167/658 (25%), Positives = 282/658 (42%), Gaps = 49/658 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FIK+LL I ++ + V ++ +A WACCPFH+EK+PSF N +GFY Sbjct: 2 IAQSFIKELLDRADIYEVVNRRVPLQQKGASA-----WACCPFHNEKSPSFSVNRERGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SFL F+++V++LA+ + + + K + + L +++ Sbjct: 57 HCFGCGEHGNAISFLMKYENLPFVDAVEKLASEFSMQV-RYEGGAPKPKSGKPRLSEIMQ 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F+ + DK YL RG+ IE F +G++PD+ ++L Sbjct: 116 RAMEFYRDKFNS--DKFSQDYLHNRGLTDETIERFGIGFSPDAWHNLDAVFTPDLKPLLL 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 S YD FRNRL+FPIR+ RGQVIAF RT+ GE KY+N+ +T +F Sbjct: 174 EAGLQ---RTGQSGNVYDFFRNRLMFPIRNIRGQVIAFSARTM-IGEEPKYINTGDTPIF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG ++ + A +Q R +I+VEG MDV+ L QAG + LGTA+ Sbjct: 230 TKGSEVFGLYEARKSIQDKKR----------VIVVEGQMDVIQLSQAGFGEACAPLGTAI 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L K++ ++ FDGD G +AA +A+DL L L +V+FV L GEDPDS Sbjct: 280 RAEHIERLLKMTDHVIFSFDGDAAGRKAAKRAMDLSLPLLDDAQKVSFVFLPEGEDPDSL 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ G AFE+++ ++LPL L + ++ ++R + K LR Sbjct: 340 VKKSGAPAFEEMLKKALPLSSYLIEALSQGLDLAVLEDRNAFIEEASPLVRKTKSPLLRD 399 Query: 423 YYSQAI--------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + D L++ F + + R + R + Sbjct: 400 GLIERLSTAVGYKNSDELRKYFGFPVLPPAAPQRPSGFGNQRYSFGRGYDRYKTPRIPTS 459 Query: 475 KLSKKPSLREAALLLTL---INHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQ 529 P +A L+ L + P + E LA+ ++ + L+ + E Sbjct: 460 TGRSIPPTADAPLMALLRNFLRFPQLALEFEGMLAEQLSESNSPVSELLFKVIERVTHED 519 Query: 530 KY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--------IVDVRQGYQQ 580 + + L K++D + + + Q + Sbjct: 520 ESGHTLAQFLADLPGPADENFEKEMDSARSMISTFLLEEGIDSVIRKGLSQGQILQTPLE 579 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIES 633 A L R LL + +E Q ++ KG + L+ + ++ +I I++ Sbjct: 580 AARLECRRILLQMELNRVEVQRRALSTKGNLDDADRKVFRDLMQLDQDLQKEIKSIDA 637 >gi|159896547|ref|YP_001542794.1| DNA primase [Herpetosiphon aurantiacus ATCC 23779] gi|159889586|gb|ABX02666.1| DNA primase [Herpetosiphon aurantiacus ATCC 23779] Length = 645 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 152/654 (23%), Positives = 264/654 (40%), Gaps = 56/654 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63 I D+ I I + I YV + N + CPFH + +TP+F Y+ Sbjct: 2 NSVIDDIKERIDIVSFISDYVPLRKAGRN-----WVGFCPFHSNTRTPAFTVFADSNSYH 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C G FL G F E++ +LAA AGV L + ++++ +++ ++ L Sbjct: 57 CFGCKASGTIFDFLMQREGIDFPEALNQLAARAGVQLRQRTAQDDQEDVLRSRMLELNAA 116 Query: 124 ATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+ H L++ + + Y+++RG+ +E F+LGYA + SL +L + + Sbjct: 117 AARFWSHQLLQSPKAAHVRSYIEQRGLTPQTVEQFQLGYASEDWSSLLGYLHDRHGANPS 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L YDRFR RL+FPI +++GQ++ FGGR L KY+NSP+T+LF Sbjct: 177 EVAEVGLALEREQGGYYDRFRGRLMFPIHNAKGQIVGFGGRIL-GDGHPKYINSPQTLLF 235 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY F A ++ + V I QAG +NV++ +GTAL Sbjct: 236 DKSSLLYGLFQARETIRSTDSVVVVEGYVDVI----------MAHQAGFRNVLAPMGTAL 285 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIP 344 T+ L K++ RI L DGD G AA + ++ ++ Sbjct: 286 TDVHAGQLNKMTKRITLAMDGDAAGQSAALRGLETLRETLDTHVRPVPTASGMLRWEREL 345 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 + LL G DPD +R + LI + PL+D T N+ ++ Sbjct: 346 DATIKIALLPDGRDPDDIVR-NNPEEWRSLIANAQPLMDFYLATLTRGLDLNSAKGKSTA 404 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 L +N I D + +Y Q + ++++ + G ++ HR + + Sbjct: 405 VERLTPLLNQIADPVEKAHYIQRLANQIKIDQRLIEGSIGGDQPERQRKPNHRQSRPAAP 464 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW----S 520 + S L ++ + RE LL LI P + ++L D L++LW S Sbjct: 465 PPVFSIL------EQEARREDFLLSLLIRFPQVQAVVSEQLRDDLAAAPTLRELWSGDVS 518 Query: 521 FLFSDFVEQKYFL----PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 LF + + + + + +L W V + Sbjct: 519 ELFERVENRVLWDLWRSAQAMATPNPIEWLETVPAELQAHGERLLNWDHAPPTRSFRVTR 578 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ L + L ++ + ++ Q+ A E ++ L+ + + Sbjct: 579 EAEECLRPLR--HRLGKRWSD---RLGQIIAAAEPDQQERLLEQAMAIQHYLRA 627 >gi|114778493|ref|ZP_01453337.1| DNA primase [Mariprofundus ferrooxydans PV-1] gi|114551218|gb|EAU53777.1| DNA primase [Mariprofundus ferrooxydans PV-1] Length = 580 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 162/611 (26%), Positives = 264/611 (43%), Gaps = 50/611 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + F+ ++L I LIG++V+ + +N CPFH EK+PSF + K Y Sbjct: 4 FQPSFLDEVLARTDIVELIGRHVELKKSGSNL-----MGLCPFHHEKSPSFSVSADKQLY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C G FL G +F E+V+ LA AG+ +P + E Q L+E Sbjct: 59 YCFGCGQGGGAFQFLMEHDGYAFPEAVEYLAEKAGLEVPQETKQDHGDEVRQKRDYELLE 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A + +L + YL +RG+ + I + LGYAP ++ + + Sbjct: 119 RAAQAMNKALHGELGGKAAAYLQQRGLPADIIRDYMLGYAPPGYGFMKRLFGSDSATNSR 178 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETIL 241 + GL+ DRFR+RL+F IR RG+++ FGGR L GE KYLNSPET Sbjct: 179 LETVGLVFK--GEHGYGDRFRDRLMFAIRDRRGRIVGFGGRVLGSGEGEAKYLNSPETPY 236 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHK LY F + ++KS +++VEGYMDVL+L G++ ++ LGTA Sbjct: 237 FHKSDLLYGFSEHRDTIRKS----------KQLVVVEGYMDVLALASHGLKIGLAPLGTA 286 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + E Q+R +++L V CFDGD G +AA++A++ +L L F+ L GEDPDS Sbjct: 287 IGERQIREIFRLCDTPVFCFDGDRAGRQAAWRALERMLPLLKAELMPAFLYLPEGEDPDS 346 Query: 362 FIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G AF +L E+ P+++ + + + RA + + + D L Sbjct: 347 LLKQEGGEAFARRLKEEAKPVLETWL-HGLKLLAGQGAEGRARMAKKADTMLAAMTDSYL 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Q Q +S + Sbjct: 406 MQAWRQEAERSSGIALQHRRRAAV---------------------TDVASEPAARADIVL 444 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + E + L+ PA + + DN + L+S FS + + + Q Sbjct: 445 NPVEDRFMAGLMQKPARFLQLSGAAMEFFVDNPAIHALYSRAFSMQADAETETIDIARQL 504 Query: 541 LCERGFGE-LLKQLDRQVRDAGLW--SATTEANIVDVRQGYQQ------ALALYKRFRLL 591 + E + ++ + Q + S + D+R +Q ++ L KR R L Sbjct: 505 IRECPADQNMISRWINQATVHDIEYKSLLLDMEANDIRCRIRQGLSLGESVQLQKRLREL 564 Query: 592 SRQKEEIEKQI 602 Q++ +++Q+ Sbjct: 565 QAQQQLLKEQL 575 >gi|121595442|ref|YP_987338.1| DNA primase [Acidovorax sp. JS42] gi|120607522|gb|ABM43262.1| DNA primase [Acidovorax sp. JS42] Length = 653 Score = 326 bits (835), Expect = 7e-87, Method: Composition-based stats. Identities = 169/679 (24%), Positives = 279/679 (41%), Gaps = 83/679 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK F Sbjct: 7 SIPQSFIQELLARVDVVDVVGRYVQLKKSGAN-----FMGLCPFHGEKSPSFSVSPSKQF 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-------KEKIQ 114 ++CF C G+ + FL G F E+VQ LA G+ +P + + + + Q Sbjct: 62 FHCFGCGKNGNAIGFLMDHAGMGFREAVQDLAQQIGMQVPDDENASPQDRERAAAQRQKQ 121 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A D + L+ + R Y RG+ + + LGYAP+ L Sbjct: 122 ATLTDVLEKAGDAWRRHLRES--PRAVQYFKGRGVSGQVAKRYGLGYAPEGWRGLASVF- 178 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + E+GL+I + YDRFR+R++FPIR+ +G+ I FGGR L + KYL Sbjct: 179 -PEYDSPLLEESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY + A N ++ + ++ EGYMDV++L Q G N Sbjct: 237 NSPETPVFHKGRELYGLYEARNAIR----------EHGYALVTEGYMDVVALAQLGFPNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T + L++ + +V FDGD G RAA KA+D L + V F+ L Sbjct: 287 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYASDTRSVKFLFLP 346 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R YG AF + + +++PL L + E T + RA + + + Sbjct: 347 AEHDPDSFVRAYGPEAFARHVGDAVPLSRFLLEAAREGCDLGTAEGRAHMLSNARPLWAA 406 Query: 415 IKDQKLRYYYSQAIRDR-------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + D L+ + + L QL+ + + + P + Sbjct: 407 LPDGALKRQLLTELGELGQLPAPDLAQLWAQESPRPGSAAHPPAHDGAPFGDEPPWGQEP 466 Query: 468 QSSLVKGKLSKKPSLREA--------------------------------ALLLTLINHP 495 +P+ R L++H Sbjct: 467 PGMEYGSPAGGEPARRWRKGGEWKGGRWRREEQRPPQPPLPRRPLTGRADHAARLLLSHM 526 Query: 496 AILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 L+E E + D L+ +L E + + L L +++ Sbjct: 527 EFLEELSHEDHALLCDQPAPHGALFVWLEGQLHEHGPQSWAVLREALAGHDCQALAERVM 586 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A TE + ++R + L E I+ Q + A + Sbjct: 587 TGS------HAQTEGDETELRAELRGLLNRML--------IEAIKLQQNALIAAASQDP- 631 Query: 615 AILISILHEVHIQIHQIES 633 I ++ + +E Sbjct: 632 -AAIERYRQLQERRRALEE 649 >gi|65321668|ref|ZP_00394627.1| COG0358: DNA primase (bacterial type) [Bacillus anthracis str. A2012] Length = 495 Score = 326 bits (835), Expect = 8e-87, Method: Composition-based stats. Identities = 139/452 (30%), Positives = 224/452 (49%), Gaps = 23/452 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL +RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLKRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L ++ KYLNSP Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRAL-GDDTPKYLNSP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +FHK K LYNF A +++K ++L EGY DVL+ ++GV+ V++ Sbjct: 238 ETPIFHKSKLLYNFHQARPFIRK----------RGQVVLFEGYADVLAAVKSGVEEAVAT 287 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALTE Q +LL + +VLC+DGD G A KA L L G +V L Sbjct: 288 MGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMKAGQL---LLQVGCQVKVTSLPDKL 344 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ YG TA L+ + V ++ + E + ++ ++D Sbjct: 345 DPDEYVQQYGTTAXXNLVKSXISFVGFKINYLRLGKNLQDESGKEEYVKSVLKELSLLQD 404 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 Y +++ + + + Y + Sbjct: 405 AMQAESYLKSLSQEFSYSMETLLNQLHQYRKE 436 >gi|260592118|ref|ZP_05857576.1| DNA primase [Prevotella veroralis F0319] gi|260535996|gb|EEX18613.1| DNA primase [Prevotella veroralis F0319] Length = 645 Score = 326 bits (834), Expect = 9e-87, Method: Composition-based stats. Identities = 149/661 (22%), Positives = 278/661 (42%), Gaps = 59/661 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +I +V + T + CPFHD++TPSF + KG Y Sbjct: 2 IDRPTVDRIMDATNIVEVISDFVSLRKAGT-----SFKGLCPFHDDRTPSFSVSPVKGVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G+ + F+ +++E+++ LA + + + +++E + + + Sbjct: 57 KCFACGAAGNAVKFIMEHEQMTYVEALKWLANKYHIEVHERELSAEEKQQENERESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F + L N D Y RG I FKLG+ R + E Q G+ Sbjct: 117 NEWAAKYFENILHNDVDGTAIGLQYFRSRGFRDDIIRKFKLGFCLSRRNAFSEAALQAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK---GESVKYLN 235 E +++ GL + DRF R++FP G+V AFGGR L + G + KY+N Sbjct: 177 KREFLVKTGLC-FERENGELIDRFNGRVMFPWVGVSGKVTAFGGRLLDERTKGVAQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++I++HK + LY F + + K + +VEGY DVLS+ Q+G++NVV Sbjct: 236 SPDSIIYHKERELYGIFQSKKAIAK----------HDLVYMVEGYTDVLSMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ YQ+R+L + + IVL +DGD G AA + D++L V +LL Sbjct: 286 ANSGTALSVYQIRMLHRFTSNIVLLYDGDAAGQHAALRGTDMLLAER---MNVKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD F R + AF + + E+ + + +R+E + I+ I Sbjct: 343 GKDPDEFARTHSAEAFRQYVEENQTDFIVFKINLLLKGVTDPI-KRSEAISSIVQSISVI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSG---YGRYWKKNARHRDQKGPSQRLMQSSLV 472 KD LR Y + +R + + + + R + + ++ + + Sbjct: 402 KDPILRDTYIRECSNRTGVSERTLMEQMNRNIHQYREQQTREQQIQKEAAIREQQSVAQP 461 Query: 473 KGKLSKKPSLREAALLLTLINHPA--ILQEQYQE-------------------LADIRYD 511 + S E ++ T++ IL++ E + Sbjct: 462 AASTVLQVSKVERMIMQTIVKDGDKIILRDIKDESTGQLLNITVAQYIAYTLMENGLSLT 521 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEAN 570 N K+ + ++ E Q + E ++ +DR L TE + Sbjct: 522 NPLYVKMLQEAVEHCADPQFKAEEYFTQHVDIDIANEAVRLSVDRFQLSESLQVKETEHS 581 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +R+ + Y L +++ +A++ + ++ ++ ++ + + + Sbjct: 582 ---LRERVLHIMTDYL----LDYYDSHLKELVARMKQTKDTDEMMGMLKEINAMQNKRNI 634 Query: 631 I 631 + Sbjct: 635 L 635 >gi|322389215|ref|ZP_08062776.1| DNA primase [Streptococcus parasanguinis ATCC 903] gi|321144120|gb|EFX39537.1| DNA primase [Streptococcus parasanguinis ATCC 903] Length = 621 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 140/632 (22%), Positives = 257/632 (40%), Gaps = 48/632 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ I ++ + I +IG+ V + N + CPFH EKTPSF+ + K FY+ Sbjct: 32 DKELIAEIKNSVNIVEVIGEVVSLTKAGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 86 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRLIE 122 CF C GD F+ G F+++VQ +A AG+ L + +L + + Sbjct: 87 CFGCGRSGDVFKFIEEYRGVVFMDAVQIVAEKAGIALQYQARPAQPTSINPNQELYEIHQ 146 Query: 123 VATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A+ F+ L + YL ERG+ I F+LG AP L +L +K + Sbjct: 147 EASKFYQAILMTTKMGEEARNYLHERGLTDEVIRHFQLGLAPAEGNYLYRNLSEKFSEKV 206 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKYLNSP 237 I ++ T +D F++R++FP+ G+VIAF GR KY NS Sbjct: 207 ITDSGLFTIS--DAGTVFDAFQDRIMFPLTDDSGRVIAFSGRLWKLTDDGSHQAKYKNSR 264 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 T LF+K LY+ A +K + ++EG+MDV++ +AG++N V+S Sbjct: 265 STRLFNKSYELYHLDQAKTSAKKQ----------HEMYIMEGFMDVIAAYRAGIENAVAS 314 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT ++ L + +++L +DGD GL A KA+D++ + V + Sbjct: 315 MGTALTPEHVQHLSHFTKKVILTYDGDKAGLEATAKALDVLQ-----DLELEIVRIPDQM 369 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +++ L+ S + + + E L I + Sbjct: 370 DPDEYLKKTSPEDLASLLKNSRISKVEFLMHYWKPQYIENLQAQIEFVEKLAPMIAQTRS 429 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + D L I + R ++ + + L ++ Sbjct: 430 ITAQNTYIYKLADLLPDFDYLQIEQIVNNSRLHQRQEDQSGGRSRTSNFSVELLPNRGMT 489 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E LL + + P +L + + D +D ELQ L+ L + +++ Sbjct: 490 RLIK-AENHLLSRMKDFPMVLNDY-RLRPDFAFDTPELQILYQLLC----QNGEVTSQDL 543 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++ + + E ++ G + + + LL ++ ++ Sbjct: 544 SEQ--------------PEGVQHAWYRMLEEDLPEEIADGELEEVEATRNRELLRKESQQ 589 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I ++ + ++ G+AEK + + L ++ Sbjct: 590 IGNKVKEASSIGDAEKALLELERLIAQKRRME 621 >gi|88606745|ref|YP_505162.1| DNA primase [Anaplasma phagocytophilum HZ] gi|88597808|gb|ABD43278.1| DNA primase [Anaplasma phagocytophilum HZ] Length = 607 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 287/632 (45%), Gaps = 46/632 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I L I + +++ + +R +Y CPFH EKTPSF+ N +YCF C Sbjct: 11 ITLLRSKIRLIDVVAGKIKLTKR----SGNNYVGLCPFHSEKTPSFNINSENELFYCFGC 66 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD + F+S G F +++Q L+ V L ++ + + L ++E A F Sbjct: 67 GATGDVIQFVSDTEGLDFKQAMQYLSERYHVEL----LDDKRPDSSHSALYDVMEKAAVF 122 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 L + K YL +RGI I F+LGY ++ HL G S EK+ E G Sbjct: 123 LSQQL--SVSKAALSYLKDRGISDSTINRFRLGYVT--STGIKAHLLSLGISMEKMSETG 178 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 LL NR+IFPI + G+VIA GGR+++ G + KYLNS E LF K + Sbjct: 179 LLTKSVQDC-----LYNRIIFPICNPMGKVIALGGRSITPGHTPKYLNSAENALFKKREC 233 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 +Y A+ +K + II+VEGYMDVL L Q G+ NVV LGT++TE+ L Sbjct: 234 MYGLHLAMGQAKKLGK----------IIVVEGYMDVLMLSQLGIHNVVGLLGTSMTEFHL 283 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 + +W + P I++ DGD GL+A+ K L + + G+ + F+ ++ G+DP R Sbjct: 284 KNIWSVVPEIIVWLDGDFAGLKASVKIAQLAVSIMKSGSSIRFISIAEGKDPYDICREQS 343 Query: 368 KTAFEKLIVESLPLVDMLWKRETEN---RSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 + LI + L + +W+ E + P++ LE +K + I+D + +Y Sbjct: 344 IDFVKDLIERAKLLSEFIWEYELSSSGIGDKVVPEQCMMLEGKIKEYTSRIQDPNVAKHY 403 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +++ L + A R K S +Q +K + + LR Sbjct: 404 RNFFYQQMKALQGY----KKWNANSYAGTAVSRANKVKSCDRLQDVSMKVCMEENYQLR- 458 Query: 485 AALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRL 541 ++ T+I P +L + +++ A I + + + + L + FL +++ ++L Sbjct: 459 --VMYTIIECPKLLDDPAIFEQFASIDFSSVDRRVLQQHIVDIKSTCDNVFLKQDLVEKL 516 Query: 542 CERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 RG +L+ + R + + G + + + +Q +LSRQ EI Sbjct: 517 RPRGQNLEAILQYIIRSMANVGCAFIVPGLSDESIEKLAKQEWEKL----MLSRQLNEIH 572 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +QI ++ +G+ + L E+ ++ + Sbjct: 573 EQIVKLRLEGKNDVALNLSEYAREIDDKLRSL 604 >gi|281420489|ref|ZP_06251488.1| DNA primase [Prevotella copri DSM 18205] gi|281405262|gb|EFB35942.1| DNA primase [Prevotella copri DSM 18205] Length = 653 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 155/675 (22%), Positives = 286/675 (42%), Gaps = 69/675 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I ++ I ++ ++V +R N Y CPFH++ PSF + ++G Sbjct: 2 IDRPTIAKIMDATKIEEVVSEFVTLKKRGIN-----YVGLCPFHNDSNPSFSVSPTRGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF+C G+ ++FL L ++ ++++ LA + + + +++E + + + Sbjct: 57 HCFTCGKGGNAINFLMELEQMTYPDALRWLAKKYKIEIQERELTNEEKQRESERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A +F L + D Y RG I F+LG+A R +L E + G+ Sbjct: 117 NDWAAKYFQDILLHDVDGIAIGMAYFRGRGFRDDIIRKFQLGFALPKRTALAEAAKAAGY 176 Query: 179 SEEKIIEAGLLIDGDNS--------ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---K 227 + + +++ GL D DRF R IFP S G+V+AFGGR L K Sbjct: 177 NPKYLVDTGLCFKVDKDEAGNKSGEDKILDRFSGRAIFPWFSVSGKVVAFGGRVLDSRTK 236 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 G S KY+NSP+++++HK + LY + A + K + +VEGY DV+S+ Sbjct: 237 GVSQKYVNSPDSVIYHKERELYGLYQAKKAIAK----------EDCVFMVEGYTDVISMH 286 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 Q G++NVV++ GTAL+ +Q+RLL + + IVL +DGD+ G+ AA + D+ L Sbjct: 287 QCGIENVVANSGTALSVHQIRLLHRFTSNIVLLYDGDNAGIHAALRGTDM---LLEEEMN 343 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 V + L G DPDSF R + F + I E+ + +K + R P +R++ Sbjct: 344 VKVLFLPDGNDPDSFARSHSAEEFRRYIQENQTDF-IQFKTDILLRGVTDPVKRSQAINS 402 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--------KKNARHRDQ 459 + I+ IK+Q R Y RL + + + R ++ A +D Sbjct: 403 IVESISKIKNQITRASYITDCSHRLGVNEAIIVNALNNFVRNGMSEQVKAERRAAGLKDS 462 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE--------------- 504 + + QS + K E L+ +I+H L Sbjct: 463 TVAAAQQAQSVMRAVTPLDKLLEVEGLLVQLIIHHGDQLITVQDVDGNDVEVAVAQYISL 522 Query: 505 ---LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 ++ N+ ++ ++ F+ E L L ++ Sbjct: 523 DLGGDGFKFHNDLYNQIMQEAVEHLEKEDDFVAETYFANHPNPEISR-LAGLPTGDQEVS 581 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 S + + +RQ + + L R ++++ E++++ A+ L+ Sbjct: 582 TASLQMKMSADKLRQFVFKDI-LSFRTHYIAQRIIEVQQEFARNPTN------RELLQEF 634 Query: 622 HEVHIQIHQIESQEA 636 ++ Q++ + + +A Sbjct: 635 MKLK-QMNTLLASQA 648 >gi|54298251|ref|YP_124620.1| DNA primase [Legionella pneumophila str. Paris] gi|53752036|emb|CAH13462.1| DNA primase [Legionella pneumophila str. Paris] Length = 577 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EKTPSF+ K FY Sbjct: 5 IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ L F ++V+ LA G+ +P + K + L L+ Sbjct: 60 HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ LK + YL RG+ + + LGYAP+ ++L + ++ + Sbjct: 118 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G+LI D YDR+RNR++FPI G+VI FGGR L K + KYLNSPET+LF Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ + II+VEGYMDV++L Q G+ NVV++LGTA Sbjct: 233 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + ++LL K + ++ CFDGD G +AA++A++ L HL G F+ L DPDS Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F +L+ ++ PL + +++ + + P + +L +K + + + + Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL + +T K + + P Sbjct: 403 LLIDDLA-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ +P I Q++ E + L ++ + + Sbjct: 443 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 499 Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL+ +L D QV + L + + +Q + ++ L ++ Sbjct: 500 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 559 Query: 596 EEIEKQIAQVTAKGEAEK 613 ++ + + + E EK Sbjct: 560 LSLQNLLKERHGQAEIEK 577 >gi|313204699|ref|YP_004043356.1| DNA primase [Paludibacter propionicigenes WB4] gi|312444015|gb|ADQ80371.1| DNA primase [Paludibacter propionicigenes WB4] Length = 649 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 166/667 (24%), Positives = 294/667 (44%), Gaps = 50/667 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + I +++G +V +R N + CPFH EKTPSF + +KG + Sbjct: 2 IDQPTIDRITEAAQIQDVVGDFVTLKKRGVNLL-----GLCPFHGEKTPSFIVSPAKGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ + F+ S+ E+++ LA + + P+ + + + + Sbjct: 57 KCFGCGKGGNSVHFIMEHEQISYYEALKYLARKYNIEVQERELSPEEQAVRNDRESMFLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A F H+L N D + Y ERG I+ F+LGY+ + R + + + G+ Sbjct: 117 NEFAQKHFTHTLHNNLDGKAIGLSYFRERGFRDDIIQKFQLGYSLEQRDAFTQAAIRAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 ++E +++ GL ++GDN+ DRFR R++FP+ S G+V+AFGGR L K + + KY+NSP Sbjct: 177 NKEYLVKTGLTLEGDNNY-LADRFRGRVMFPVHSLSGKVVAFGGRILKKDDKMAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQSIVKQDR----------CFLVEGYTDVISMHQSGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + + + +DGD G++A+ + IDL L G + +LL G+ Sbjct: 286 SGTSLTPGQIRLIHRFTENVTVIYDGDAAGIKASIRGIDL---LLEEGLNIKVLLLPDGD 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + F + + + + N P +RA L + + I+ I + Sbjct: 343 DPDSFARKTNASDFIEYVERNASDFIRFKTNLLLADAGNDPVKRAGLVLDIVRSISIIPN 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLV--KG 474 +R Y + L Q E + +KNA R P +G Sbjct: 403 TAIRGEYVKECSTLLNVEEQMLYYEINKLKTNEQEKNATRRSNAAPDMPPPDEFFAHEQG 462 Query: 475 KLSKKPSLREAALLLTLINHPAIL---------------QEQYQELA--DIRYDNNELQK 517 ++ + +E +L L+ H + +EL ++ ++N Sbjct: 463 VVTSRFEEQERNILQVLVKHGEAVFFYSDEEKQHPVTVGDYILEELERDNLVFENPVHAL 522 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ---VRDAGLWSATTEANIVDV 574 ++ + +Q+ F E L L + + E + Sbjct: 523 MFEE-YKMHHKQENFSAERFFLYHQNGQISMLTADLVTEKYTLSKVHSKIKRVETDAERF 581 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQIE 632 + + +K +L K+++ + A AK A ++ +S L V Q+ + Sbjct: 582 IDLVPRVVFEFKNMLILDMIKQKLLQMKAANDAKNNALVDEIMQEMSQLEVVKKQLSKTL 641 Query: 633 SQEAMIE 639 + +I+ Sbjct: 642 GERIIIK 648 >gi|196229538|ref|ZP_03128403.1| DNA primase [Chthoniobacter flavus Ellin428] gi|196226770|gb|EDY21275.1| DNA primase [Chthoniobacter flavus Ellin428] Length = 602 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 163/636 (25%), Positives = 272/636 (42%), Gaps = 53/636 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P + I+ ++ + ++IG Y R Y A CPFH+EKTPSF N + Sbjct: 1 MSLIPPEIIEQVIAANDVVDVIGGYFPLKRSG-----PVYKAICPFHNEKTPSFTVNPQR 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDL 117 + CF C G+ L F+ F+ +V++LA AG+ + + E+ + L Sbjct: 56 QIFKCFGCGAGGNVLRFVMNYENLDFLGAVKKLAERAGIKIEQTELSAEQAAEYSMLRRL 115 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + L A DFFH L K + YL RGI + +KLGYAPD ++R+ + Sbjct: 116 LALHAEAADFFHWHLMKKPSAQIARDYLKSRGIGADVARAWKLGYAPDEWDAMRDFADSR 175 Query: 177 GFSEEKIIEAGLLI---DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVK 232 GFS+E+++ +GL+ + + + YDRFR R++FPI +VIAF GR L ++ K Sbjct: 176 GFSDEELVASGLVKLRDEENPRSEFYDRFRARVMFPICKDTDEVIAFSGRVLQADAKAAK 235 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+NSPET+LF KG L+ + L + I+ EG +D+++ + GVQ Sbjct: 236 YVNSPETMLFKKGAVLFGLNKSKRAL----------IEAKSAIVCEGQLDLITAFEHGVQ 285 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 NV++ GTA TE Q +L + +VLCFD D G +AA +++ L V Sbjct: 286 NVIAPQGTAFTEKQAHILKRFVEEVVLCFDADVAGEKAAERSL---ASLLAENLLVRVAG 342 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + +GEDPDS IR G AF + I + D R FNTP + + + I Sbjct: 343 MPQGEDPDSMIRGKGADAFREQIAGARDFFDYQLDRMVAGPDFNTPRGKMQAVRKMAEFI 402 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I+D LR + RL+ Q+++ P + S + Sbjct: 403 SLIRDSVLRETVMNRVTQRLEISAQEFVRLLKAPPSKTPDPLSTVTATAPPDPFAEDSTI 462 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + L +LR+AA L+ P + + + + L L +D Sbjct: 463 R--LLATVALRDAAAREWLLAEPW------DSVLRDQL---DAELLVKILRADIQPDDDA 511 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 L + L+ ++ + V +++ R R+ Sbjct: 512 SVHVFMTTLSATEEAAISGLLEEKMLAHPMTI---------VHDCWRELERRKIRHRV-- 560 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 E + + + E+ A ++ + ++ ++ Sbjct: 561 ----EATQARLRTPDLPDTER-AEMLKEILDLQKRL 591 >gi|153208759|ref|ZP_01946997.1| DNA primase [Coxiella burnetii 'MSU Goat Q177'] gi|165918785|ref|ZP_02218871.1| DNA primase [Coxiella burnetii RSA 334] gi|120575791|gb|EAX32415.1| DNA primase [Coxiella burnetii 'MSU Goat Q177'] gi|165917509|gb|EDR36113.1| DNA primase [Coxiella burnetii RSA 334] Length = 553 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 4 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 59 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FILL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 118 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 176 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 232 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 282 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 342 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 402 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 437 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 438 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 494 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 495 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 541 Query: 602 IAQVTAKGEAEK 613 + + + K ++ Sbjct: 542 LIKASHKETLDE 553 >gi|315607674|ref|ZP_07882668.1| DNA primase [Prevotella buccae ATCC 33574] gi|315250610|gb|EFU30605.1| DNA primase [Prevotella buccae ATCC 33574] Length = 645 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 152/660 (23%), Positives = 280/660 (42%), Gaps = 67/660 (10%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 I +++ +YV +R N Y CPFH++ PSF + S+G +CF+C G+ Sbjct: 2 DATNIVDVVSEYVSLRKRGVN-----YVGLCPFHNDSHPSFSVSPSRGICHCFTCGKGGN 56 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRLIEVATDFFHH 130 ++FL L ++ ++++ LA + + + +K+E + + + E A +F Sbjct: 57 AVNFLMELEQMTYPDALRWLARKYNIEVRERELSDEEKKRENERESMFIVNEWAAKYFQQ 116 Query: 131 SLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L D Y RG I F+LG+AP+ R +L + + G+ E +I+ GL Sbjct: 117 ILHEDVDGMAIGMQYFRSRGFRDDIIRKFQLGFAPNQRDALSQAAVKHGYQAEFLIKTGL 176 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETILFHKG 245 D DRF R IFP G+V+AFGGR L KG S KY+NSP++ ++HK Sbjct: 177 CYQRDGG-GLVDRFAGRAIFPWIGVSGKVVAFGGRVLDSRTKGVSQKYVNSPDSEVYHKE 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 + LY + A + K + +VEGY DV+S+ Q G++NVV++ GTAL+ Y Sbjct: 236 RELYGIYQAKKAIAK----------EDCVYMVEGYTDVISMHQCGIENVVANSGTALSNY 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+R+L + + IVL +DGD G+ AA + D++L G + +LL G DPDSF R Sbjct: 286 QIRMLHRFTNNIVLLYDGDAAGIHAAMRGTDMLLSE---GMNIKVLLLPDGNDPDSFARN 342 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + F+ I E + +K + P +R+E + I+ I DQ +R Y Sbjct: 343 HTAADFKSYIEEHQTDF-IQFKTNLLLKGVTDPIKRSEAINSIVESISLITDQIVRAAYI 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ-----------SSLVKG 474 RL I++ + + R K + + + + ++ Sbjct: 402 HDCAQRLGINEATLISQMNRFIRNGKDERQKAEMRSAGLQQAPGEPSVPGAVESRPAIEA 461 Query: 475 KLSKKPSLREAALLLTLINHPA--------------------ILQEQYQELAD--IRYDN 512 + + E ++ + H + Q Y +L +++ N Sbjct: 462 AKTTQEKEVERMIIQMVFRHGDELISVDANGGEGETETVTLPVAQYIYYDLEADGLKFKN 521 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK-QLDRQVRDAGLWSATTEANI 571 + ++ + ++ + + ++ +D+ + + +E Sbjct: 522 DTYNRVLTECVDHLDDETFKAENYFLRHHDPEISKLAVEMSVDKVPMPKNVQTQPSE--- 578 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +R + + L R + E++++ I + + +K L+ + I + + Sbjct: 579 DKLRNEVVRLV-LDFRMNYVEGHLEQLKRDI--LRHADDNDKMMALMEEYKNMQIIRNNL 635 >gi|52842570|ref|YP_096369.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629681|gb|AAU28422.1| DNA primase DnaG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 581 Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EKTPSF+ K FY Sbjct: 9 IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ L F ++V+ LA G+ +P + K + L L+ Sbjct: 64 HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ LK + YL RG+ + + LGYAP+ ++L + ++ + Sbjct: 122 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 177 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G+LI D YDR+RNR++FPI G+VI FGGR L K + KYLNSPET+LF Sbjct: 178 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 236 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ + II+VEGYMDV++L Q G+ NVV++LGTA Sbjct: 237 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 286 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + ++LL K + ++ CFDGD G +AA++A++ L HL G F+ L DPDS Sbjct: 287 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 346 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F +L+ ++ PL + +++ + + P + +L +K + + + + Sbjct: 347 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 406 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL + +T K + + P Sbjct: 407 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 446 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ +P I Q++ E + L ++ + + Sbjct: 447 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 503 Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL+ +L D QV + L + + +Q + ++ L ++ Sbjct: 504 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 563 Query: 596 EEIEKQIAQVTAKGEAEK 613 ++ + + + E EK Sbjct: 564 LSLQNLLKERHGQAEIEK 581 >gi|229815175|ref|ZP_04445511.1| hypothetical protein COLINT_02220 [Collinsella intestinalis DSM 13280] gi|229809185|gb|EEP44951.1| hypothetical protein COLINT_02220 [Collinsella intestinalis DSM 13280] Length = 663 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 173/694 (24%), Positives = 294/694 (42%), Gaps = 89/694 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D + + L+ + V+ R D W CCPFH EKTPSFH + + Sbjct: 2 ISEDDKNKVRDATDLVALVSETVELRPRGN----TDLWGCCPFHGEKTPSFHVIPATQVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +++ G SF ES++ LA AG+ L D ++ + L+ + E Sbjct: 58 HCFGCGEGGDAFTYVMKREGLSFPESIRYLADRAGIELEE-DHSFKRSGTKRNRLVEVCE 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+H L +D R Y ER +D+ ++LG+AP L HL KGF+ ++ Sbjct: 117 ETCSFYHTLLMRGKDARGRDYCKERELDAETCRKYRLGFAP-GHGMLVRHLGSKGFTPQE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241 +I+A + DRF +R++FPI +G+ IAFGGR L K ++ KYLNS ET + Sbjct: 176 MIDANVAFRSRGG-GLVDRFFDRVMFPIFDEQGRCIAFGGRALDKEKTNAKYLNSSETPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKGKNLY F A +++ +++ I+VEGY+ +S +AG++N+V+ LGTA Sbjct: 235 FHKGKNLYGFNWAKDHI----------VNNNEAIVVEGYISAMSCWKAGIENIVAVLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE ++ L + + +IV FDGD G +AA +A+ + V+L G+DPD Sbjct: 285 LTENHVKTLMRFTKKIVYMFDGDAAGQKAARRAVQ---FIEKDDLDLRCVILPNGQDPDD 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R G A +L+ S+PL+D ++ + E +TP RA+ I ++ + Sbjct: 342 FVRANGGEALRELLDNSIPLMDFVFGKLEEESDISTPGGRAKAMRSALELIYPLRASYMI 401 Query: 422 YYYSQAIRDRLQQL-----------FQKYITEHSGYGRYWKKNARHRDQK---------- 460 Y I DRL F++ R K+ R + Sbjct: 402 DSYYMQIADRLGLDVDTIRASAGKVFREVQQREETARRREKQRERAQSSPDTQQAAGAPA 461 Query: 461 ------------------GPSQRLMQSSLVKGKLSKKPSL-------REA-------ALL 488 P + +Q + V + P E LL Sbjct: 462 PAPSGYDEVPYEEVPYDYEPVEDPVQGAPVPTEADAGPDAGNGLLTDLERRQLACEHELL 521 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L +P + + + ++ + + + + + + + +C Sbjct: 522 TLLTTYPDSFRVYAERITEVEWVDARSETIAWSILATPEGTAPADAMAAARTVCPE---- 577 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 Q+ +GL SAT++ + L LY R+ + + ++ + Sbjct: 578 -----AAQLVGSGLLSATSKHPTETNIEFLLDTLELY----TTRRRMKTAQARLRSNRSM 628 Query: 609 GEAEKTAILISILHEVHIQIHQI-ESQEAMIEGF 641 E+ + I + +I ++ ++ E + + F Sbjct: 629 SSDERRELAIQATRDA-ARIRELEQAVEGIADPF 661 >gi|284929748|ref|YP_003422270.1| DNA primase [cyanobacterium UCYN-A] gi|284810192|gb|ADB95889.1| DNA primase [cyanobacterium UCYN-A] Length = 649 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 138/652 (21%), Positives = 279/652 (42%), Gaps = 35/652 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P D ++++ I +I ++V +R N Y CPFH+EKTPSF N K Sbjct: 5 RIPSDTLEEIKERANIYEVISEHVVLKKRGKN-----YVGLCPFHNEKTPSFSVNPDKQL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 +YCF C G+ + FL L F + V LA +P+ ++ + ++K +Q L Sbjct: 60 FYCFGCGAGGNAIKFLMELKKEPFHQVVLELAKQYKIPIKELESENTKTLQEKISLQDQL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ + +++ H L + Y +++R + I F +GY+P+ +L + + Sbjct: 120 YEILATSANYYEHLLHEPSGTQALDYLINKRRLKLETISKFNIGYSPEGWETLYSYLVEY 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K +S + + + G++ + YD FR R++ PI+ +G+++AFGGR+L + KYLN Sbjct: 180 KKYSTDLLEQTGMIKRRNKGNGYYDTFRGRIMIPIKDVQGRIVAFGGRSL-NNQEPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF K K L+ + ++ + I+VEGY DV+SL +AG+ N V Sbjct: 239 SPETALFSKSKILFALDQSYKNIR----------NLDQAIVVEGYFDVISLHEAGINNTV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN-RVNFVL 352 +SLGT ++ QLR L + + +IV FD D+ G++A + I + + G ++ + Sbjct: 289 ASLGTTFSKAQLRKLLRYTDSKQIVFNFDADNAGIKATQRMITEIESLVYSGQVQLKILN 348 Query: 353 LSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L G+D D F + +LI + ++ N+ D ++ + + Sbjct: 349 LPNGKDADEFIQFNQNSTEQYYELISNAPLWFSWQIQQILLNKDLKRADHFEKIVKEMID 408 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + D R YY + + L Q + I + + + Sbjct: 409 LLSKLSDYNKREYYIRHCSEVLSQGDARLIPIYLKNFQLQLAKPIAKQTNNEKSGKFTKV 468 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLFSDFVE 528 + + + E LL + +P + ++L ++ + E + +W+ + Sbjct: 469 NILLE-DQLLKEAENNLLKVYLRYPEYRSQISKDLESKNLFFSVQEHRVIWAEILEFEDN 527 Query: 529 ---QKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + ++ +L E + L ++ Q+ + + +I + + +L Sbjct: 528 HQYDEKIDKYQLIYKLQETIWDSSLTEICINQILNFSELEQHEDNDIERLDLIIKASLIF 587 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++ L + + + + + ++ +I ++S ++ Sbjct: 588 LEKA-SLKKYCYYCKTKYQMIDKNKDLVNFEYYLNEYIASKQKILLLQSLQS 638 >gi|292670110|ref|ZP_06603536.1| DNA primase [Selenomonas noxia ATCC 43541] gi|292648298|gb|EFF66270.1| DNA primase [Selenomonas noxia ATCC 43541] Length = 593 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 266/633 (42%), Gaps = 52/633 (8%) Query: 1 MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P F++ + I ++ YV R+ YW CCPFH+EKT SF + Sbjct: 1 MRDPRMEAFVQQVRAQTDILAVVQGYVSLKRKGN-----RYWGCCPFHNEKTASFSVVPA 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--D 116 +GF+YCF CH GD F+S + + E+++R A G+PLP ++ +++ D Sbjct: 56 EGFFYCFGCHAGGDAFKFISLMEHITPFEAIKRQAEQLGIPLPERKRDAREEARLRALDD 115 Query: 117 LIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L R +A DFFH L YL RGI AIE ++LG+APD+ L + ++ Sbjct: 116 LRRANALARDFFHSCLTVTRYGAAGKAYLAGRGITDEAIERYQLGFAPDAWSKLSDAFKK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 +G SE+ +++AGL + YDRFRNR+I PI RG+V+ FGGR L KYLN Sbjct: 176 RGISEKILVDAGLAAVRERGGGVYDRFRNRVIIPIADERGRVVGFGGRAL-GDAKPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 + ET +F+K K L+ A + I+VEGYMD ++ +AG NVV Sbjct: 235 TAETPVFNKRKLLFGLDRAHRAIA----------QEGCAIVVEGYMDAIAAWEAGAANVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGT+ T LL + +PRIV C+D D G A +A+ V V +LL Sbjct: 285 ATLGTSFTSDHAALLLRRAPRIVFCYDSDAAGQEATLRALAAVRGRTA---EVRVLLLPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD ++R +G AF L+ ++P + R + D R + + + Sbjct: 342 GKDPDEYVRTHGAEAFRALVETAVPAPEYRL-RHVRAHMADGIDGRRAALAEMLPVLADL 400 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D+ R Y + L Y R + + + Sbjct: 401 -DEVARGAYMRRTAAELFLDEGVVADALRSYLRQGR--------PRETSVQTPQRTPTRQ 451 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L+ + +L + + ++ L +++ + + Sbjct: 452 PGDVLRRAGRELIAAVWRDADLLMRILSVVPSDDFPDDFLGEIFRSMERRLAQGGALD-A 510 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L E+ + L R A ++AL +R L++Q Sbjct: 511 DFIAALPADAGTEISRALVEDGRTA---------------DSCREALGTLRRAY-LTQQL 554 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++ +G+A L + + + ++ Sbjct: 555 ARHTHRAEEMMQEGKAAYIDEL-NQVKRIQDEL 586 >gi|331001173|ref|ZP_08324800.1| DNA primase [Parasutterella excrementihominis YIT 11859] gi|329569105|gb|EGG50897.1| DNA primase [Parasutterella excrementihominis YIT 11859] Length = 649 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 167/658 (25%), Positives = 283/658 (43%), Gaps = 49/658 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FIK+LL I ++ + V ++ +A WACCPFH+EK+PSF N +GFY Sbjct: 2 IAQSFIKELLDRADIYEVVNRRVPLQQKGASA-----WACCPFHNEKSPSFSVNRERGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SFL F+++V++LA+ + + + K + + L +++ Sbjct: 57 HCFGCGEHGNAISFLMKYENLPFVDAVEKLASEFSMQV-RYEGGAPKPKSGKPRLSEIMQ 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F+ + DK YL +RG+ IE F +G++PD+ ++L Sbjct: 116 RAMEFYRDKFNS--DKFSQDYLHDRGLKDETIERFGIGFSPDAWHNLDAVFSPDLKPLLL 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 S YD FRNRL+FPIR+ RGQVIAF RT+ GE KY+N+ +T +F Sbjct: 174 EAGLQ---RTGQSGNVYDFFRNRLMFPIRNIRGQVIAFSARTM-IGEEPKYINTGDTPIF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG ++ + A +Q R +I+VEG MDV+ L QAG + LGTA+ Sbjct: 230 TKGSEVFGLYEARKSIQDKKR----------VIVVEGQMDVIQLSQAGFGEACAPLGTAI 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + L K++ ++ FDGD G +AA +A+DL L L +V+FV L GEDPDS Sbjct: 280 RAEHIERLLKMTDHVIFSFDGDAAGRKAAKRAMDLSLPLLDDAQKVSFVFLPEGEDPDSL 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ G AFE+++ ++LPL L + ++ ++R + K LR Sbjct: 340 VKKSGAPAFEEMLKKALPLSSYLIEALSQGLDLAVLEDRNAFIEEASPLVRKTKSPLLRD 399 Query: 423 YYSQAI--------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + D L++ F + + R + R + Sbjct: 400 GLIERLSTAVGYKNSDELRKYFGFPVLPPAAPQRPSGFGNQRYSFGRGYDRYKTPRIPTS 459 Query: 475 KLSKKPSLREAALLLTL---INHPAILQEQYQELADI--RYDNNELQKLWSFLFSDFVEQ 529 P +A L+ L + P + E LA+ ++ + L+ + E Sbjct: 460 TGRSIPPKADAPLMALLRNFLRFPQLALEFEGMLAEQLSESNSPVSELLFKVIERVTHED 519 Query: 530 KY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--------IVDVRQGYQQ 580 + + L K++D + + + Q + Sbjct: 520 ESGHTLAQFLADLPGPADENFEKEMDSARSMISTFLLEEGIDSVIRKGLSQGQILQTPLE 579 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI-----LISILHEVHIQIHQIES 633 A L R LL + +E Q ++ KG + L+ + ++ +I I++ Sbjct: 580 AARLECRRILLQMELNRVEVQRRALSTKGNLDDADRKVFRDLMQLDQDLQKEIKSIDA 637 >gi|288574623|ref|ZP_06392980.1| DNA primase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570364|gb|EFC91921.1| DNA primase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 582 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 157/624 (25%), Positives = 261/624 (41%), Gaps = 51/624 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D + + + + +++G YV R N Y CPFH+EKTPSF+ + + ++CF Sbjct: 3 DDVDRIKSRLDVVDIVGDYVKLTRSGRN-----YKGLCPFHEEKTPSFYVSQERQSWHCF 57 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD SF+ G SF E++ LA AG+ + + L ++E A Sbjct: 58 GCGKGGDIFSFVMEKEGLSFPEALSLLARRAGIEIESYRRSD---GSGKKTLFDIMEEAC 114 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 F + + YLD R I F+LG++P S + +++++KG S + Sbjct: 115 SLFRTCMNGDQGSVPRGYLDRRMIPPQVRSSFELGWSPPSWSFMVQYIKKKGISLKDAER 174 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 GL+ + YDRFR R+IFPIR G+++AFGGR + G+ KYLNSPET ++ K Sbjct: 175 CGLV--LRGNRGPYDRFRGRVIFPIRDITGRLVAFGGR-IVDGDGAKYLNSPETEIYSKR 231 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 + LY A ++ + I+VEGYMD L L G V++LGTALTE Sbjct: 232 RTLYLIDKAKGAIR----------NGGHSIIVEGYMDALRLHMEGYPQTVATLGTALTED 281 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q +L +L+ + +C+D D G AA I + G V V L G+DPD +R Sbjct: 282 QATILKRLADEVFICYDADQAGQTAA---IRGMYVLQQAGLSVKVVALPEGKDPDDLLRS 338 Query: 366 YGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 G A F + E+LPLV+ K + + R L +++I D Y Sbjct: 339 DGGKARFNDCLKEALPLVEHHIKLLSPAIKDDRT--RKSAIHDLLEGLSNI-DVTDVSPY 395 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ L + + +K R D + L ++ P E Sbjct: 396 LPSLAALLGIRDFEVLDALERVRSKRRKTDRSFDTEEIPSSLPDEGQQSQEMPPLP---E 452 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 AL+ L + + ++ + L+ + S + P + +R E Sbjct: 453 IALISLLWSECDLRRKCDTREVVELLSDPRLKLMASSIM------MGESPSSLEKRWLEM 506 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 G L+ L R ++ ++ ++ L R + + E+ ++ + Sbjct: 507 GETFQLRVLARGGAYLDEFTQNSDWK-------WRHFCHLLYRQKG-QMRYNELRVKMLK 558 Query: 605 VTAKGEAEKTAILISILHEVHIQI 628 E T I + ++ ++ Sbjct: 559 G------EATTREIREMEDLRQKL 576 >gi|71891847|ref|YP_277576.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795953|gb|AAZ40704.1| DNA primase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 581 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 156/622 (25%), Positives = 286/622 (45%), Gaps = 48/622 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I +L+ I +LI Q V ++ N + ACCPFH EK PSF N K F Sbjct: 3 RIPNTVINELISRTNIVDLISQRVPLKKQGKN-----FLACCPFHTEKHPSFTVNIEKQF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCFSC G+ + FL +F+E+++ L+ + G+ + ++ ++ +L +L+ Sbjct: 58 YYCFSCGSHGNVIDFLMHYDRLTFLEAIKELSIMHGISIEKNLNVCKRNNYLKNNLYQLM 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++ + L + + YL RG+++ I+ F +G+AP ++ + + ++ Sbjct: 118 NKLCAYYKNILTQKKYLYAYKYLKNRGLNTKTIDDFNIGFAPPRWNNIIQKFGLTLYDQK 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + ++G+LI + YDRFR+RLIFPIR G+++AFGGR +++ + KYLNSP+T + Sbjct: 178 LLDQSGMLISSNTKKYKYDRFRDRLIFPIRDITGRIVAFGGRVITQNKIPKYLNSPDTEI 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K ++LY + A ++ + S I+LVEGY+DV++L Q G+ V++LGT+ Sbjct: 238 FKKSQHLYGLYEAR----------MKHKNLSCILLVEGYIDVITLTQFGINYAVAALGTS 287 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T+ +RLL+ ++ +I+ C+DGD G +AA++ ++ L +L +++F L GEDPD+ Sbjct: 288 TTDNHIRLLYSITDQIICCYDGDYAGKKAAWRTLNTALPYLTDERQIHFAFLPHGEDPDT 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR GK F K + ++ L + L++ ++ + T R +L + + I Q L+ Sbjct: 348 LIRKIGKDNFLKRLTQTQDLSNFLFETLSKKTNLQTLSGRVKLSSLILPILKKIPGQTLK 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q + +++ L +++ N +R S Sbjct: 408 LCLLQQLGNKIGILDDNKLSQLLTRKPVTYTNKINRCYVNNSIGH--------------- 452 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L+ LI +P + + + N++ L ++ + Sbjct: 453 ----ILVGLLIQNPRLSKLVPSVQGLEQLKQNDIVMFID-LIQICKTYPISTSAQLLEHY 507 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 F +L+ L + + + AL L RQ E Sbjct: 508 RGNKF---FSKLESLAYWNHLITN------DMIETTFVDALTKLYNLTLEKRQ----ELL 554 Query: 602 IAQVTAKGEAEKTAILISILHE 623 IA+ G + + +L++ Sbjct: 555 IARDRTSGLTTQERQELWLLNQ 576 >gi|222152853|ref|YP_002562030.1| DNA primase [Streptococcus uberis 0140J] gi|222113666|emb|CAR41592.1| DNA primase [Streptococcus uberis 0140J] Length = 603 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 267/636 (41%), Gaps = 51/636 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKETISQIKNSVNIVDVIGEVVALSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLIR 119 ++CF C GD F+ F+ESVQ LA +G+ + + P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQILAERSGLAIEPLTPNQQASSSKRPHQLLLD 125 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E A F+H L ++ YL +RG+D I FK+G AP + Sbjct: 126 IHEDAQKFYHAVLMTTKIGQKARDYLYQRGLDDDLIAHFKIGLAPAEMD-YLYRSLSPKY 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E+++ +GL ++S T YD FRNR++FP+ +G IAF GR ++ + KY Sbjct: 185 GEKELSASGLFNLSESSNTIYDAFRNRIMFPLTDDKGNTIAFSGRIWTEEDQAKKMAKYK 244 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T+LF+K Y+ A + K + L+EG+MDV++ +AG +N Sbjct: 245 NSRATVLFNKSFEFYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYRAGHENA 294 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++S+GTALT ++ L L+ +++L +DGDD G +A K+++L+ + V + Sbjct: 295 IASMGTALTNEHVQHLKSLTKKVILTYDGDDAGQKAIAKSLELLKDFQVE-----IVRIP 349 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD FI+ +L+ S + + + + + I Sbjct: 350 HKMDPDEFIQKNSPEDLSQLLEHSRISDVEFLIEFLKPENMDNLQSQIAYVEQIGRIIAA 409 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + D L + + R ++ R P +++ +L Sbjct: 410 APSITAQNSYINRVADLLPDFDYLQVEQTVNSYRLEERQQRQGSALSPVTKMV--TLPLS 467 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E LL LI+H +L E + + +D +LQ+L+ + E Sbjct: 468 KNLSAIAKAENQLLHRLIHHDYLLNEFRHK-EEFYFDTPQLQQLY-HILKTNGEISSLDL 525 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SR 593 + + + + V + L + I D+ L KR +LL R Sbjct: 526 STLSEDVNHAYYR---------VLEENLPPEVSHGEIDDI---------LRKRQKLLNER 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ KQ+ + + G+ + ++ L ++ Sbjct: 568 DIQKQGKQVRESSNSGDHQLALEVLENLIAQKRKME 603 >gi|163848458|ref|YP_001636502.1| DNA primase [Chloroflexus aurantiacus J-10-fl] gi|222526386|ref|YP_002570857.1| DNA primase [Chloroflexus sp. Y-400-fl] gi|163669747|gb|ABY36113.1| DNA primase [Chloroflexus aurantiacus J-10-fl] gi|222450265|gb|ACM54531.1| DNA primase [Chloroflexus sp. Y-400-fl] Length = 655 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 156/666 (23%), Positives = 286/666 (42%), Gaps = 70/666 (10%) Query: 6 DFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63 I D+ +I I +LI V R + CPFH + +TP+FH +Y Sbjct: 2 SVIDDIKANIDIVDLINSMGVGLRRSGR-----SFVGFCPFHPNTRTPAFHVYPDTQSFY 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF CH G F+ G F +++ LAA AG+ L + +++ + L+ + + Sbjct: 57 CFGCHASGTAFDFVMRKQGLDFKGALELLAARAGIRLEPKNDAQRQEDARRARLLEINGI 116 Query: 124 ATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181 A +F++ L N +R + Y+ RGI+ AI+ F++GY+ D L + +KG+S E Sbjct: 117 AARYFNYVLLNLSRGEPGRDYIARRGINQDAIDAFQIGYSLDDWNHLFSYLHEKKGYSVE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +I AGL+I YDRFRNR+IFPIR+ RG+VI FGGR L KYLN+PET L Sbjct: 177 DLITAGLVI--PGERGPYDRFRNRIIFPIRNIRGEVIGFGGRAL-GDAQPKYLNTPETPL 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K + LY A + ++ + R I+VEGY+DV++ Q G +NVV+ LGTA Sbjct: 234 FKKSEVLYGLDLARDAIRTANRA----------IVVEGYVDVITAHQHGFRNVVAPLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------I 343 L++ + L +L+ ++ L D D G +A + ++ + Sbjct: 284 LSKAHINQLKRLTDQVYLALDADAAGQKATLRGLETIRTTSEEEGEGRMVTTAQGIVRLE 343 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + + L G DPD I ++ L+ ++ P++D + T + P ++ + Sbjct: 344 NDVTIRIIRLPAGRDPDEVI-AADPQLWQTLVDQAAPVMDFYLEAYTAGLDMHDPTQQRQ 402 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + ++ + D + Y + + + + +++ R+R + + Sbjct: 403 ALERIIPLLSEL-DGAAQRVYVARVEQLTGVRSELIVDLIRTRLQPTRRSERNRTSRPSA 461 Query: 464 QRLMQSSLVKGKLSKKPSLR-EAALLLTLINHPAILQEQYQELADIR------------- 509 L +S V + EA LL + +P++ L +++ Sbjct: 462 PPLPATSPVSTTPLDEHRRHTEAYLLALALRYPSVNLAIENLLENLKKQHRDAGALFGAG 521 Query: 510 ----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + Q +W + +E + PE + + + L + A L Sbjct: 522 LEDLLEEPLHQAIWQAYLATPLELRPTDPESLQFWV------DTLGEPLSSEAKALLEVL 575 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + V R +Q L ++ + + ++++ ++T + E+ ++ + ++ Sbjct: 576 NRRPDDVRFRHEAEQCARLIRKA-QIMARIRRYKERLDELT---DEEEIQQVLQHIRDLS 631 Query: 626 IQIHQI 631 QI Sbjct: 632 SYAEQI 637 >gi|148359901|ref|YP_001251108.1| DNA primase DnaG [Legionella pneumophila str. Corby] gi|296107952|ref|YP_003619653.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy] gi|148281674|gb|ABQ55762.1| DNA primase DnaG [Legionella pneumophila str. Corby] gi|295649854|gb|ADG25701.1| DNA primase DnaG [Legionella pneumophila 2300/99 Alcoy] Length = 577 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 163/618 (26%), Positives = 277/618 (44%), Gaps = 52/618 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EKTPSF+ K FY Sbjct: 5 IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ L F ++V+ LA G+ +P + K + L L+ Sbjct: 60 HCFGCGASGNAISFVMNYLNQGFTDAVETLATRLGLSVPRDGTGEKHKSSLN--LYNLMS 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ LK + YL RG+ + + LGYAP+ ++L + ++ + Sbjct: 118 EVSQYYQKKLKYN-GQTAIEYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G+LI D YDR+RNR++FPI G+VI FGGR L K + KYLNSPET+LF Sbjct: 174 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ + II+VEGYMDV++L Q G+ NVV++LGTA Sbjct: 233 QKSRELYGLHQ----------ILSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + ++LL K + ++ CFDGD G +AA++A++ L HL G F+ L DPDS Sbjct: 283 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F +L+ ++ PL + +++ + + P + +L +K + + + + Sbjct: 343 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL + +T K + + P Sbjct: 403 LLIDDLA-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 442 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ +P I Q++ E + L ++ + + Sbjct: 443 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 499 Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL+ +L D QV + L + + +Q + ++ L ++ Sbjct: 500 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 559 Query: 596 EEIEKQIAQVTAKGEAEK 613 ++ + + + E EK Sbjct: 560 LSLQNLLKERHGQAEIEK 577 >gi|161829861|ref|YP_001597430.1| DNA primase [Coxiella burnetii RSA 331] gi|161761728|gb|ABX77370.1| DNA primase [Coxiella burnetii RSA 331] Length = 553 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 4 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 59 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 118 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 176 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 232 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 282 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 342 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 402 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 437 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 438 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 494 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 495 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 541 Query: 602 IAQVTAKGEAEK 613 + + + K ++ Sbjct: 542 LIKASHKETLDE 553 >gi|170017100|ref|YP_001728019.1| DNA primase DnaG [Leuconostoc citreum KM20] gi|169803957|gb|ACA82575.1| DNA primase DnaG [Leuconostoc citreum KM20] Length = 620 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 144/648 (22%), Positives = 263/648 (40%), Gaps = 50/648 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++IGQY +R + CPFHD++ PS ++K Sbjct: 4 RIPESFIAEVRQKVNIVDVIGQYTQLVKRGRQ-----WTGSCPFHDDRHPSLFVEENKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 + CFSC G SF+ G S+ E++ LA + + + + + Sbjct: 59 FNCFSCGRSGSVFSFVMEKEGMSYPEAIISLAESVDMQVDSQFVADATPRIDPKTQAIFD 118 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + H L++ HY D+R + I+ F +G+ PD L ++ + Sbjct: 119 LQAAAQRLYQHILQHTTSGETALHYLHDKRQLTDETIKQFGIGFVPDD-NVLLQYAETQN 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E ++ + L ++ DRF R+++PIRS+ GQV+ F GRTL S+KY+NSP Sbjct: 178 ISREIMLASDLF-LSNDEGRLRDRFAGRVVWPIRSTNGQVVGFSGRTLDSKNSIKYMNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ F+KG+ LYNF A ++K + ++ EG+MDV+S AG V++ Sbjct: 237 ESPFFNKGQILYNFDLAKGDIRK----------TGTAMIFEGFMDVISSEIAGRPAAVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT+ +R L +L+ RI+L +DGD+ G AA ++I L+ + V L Sbjct: 287 MGTALTQDHVRQLTRLAKRILLVYDGDEAGQNAAKRSIHLIQAQ-KQDVDIGIVHLPDDL 345 Query: 358 DPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD GK + L + L + N++ + + + Sbjct: 346 DPDEVRVQKGKEVLKQALDQNIQTPIAFLIQAARYNKNLSNQTQYLAFLGEAMTILQQ-A 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--- 473 + I + Q I + + K +R + Q+ Q + ++ Sbjct: 405 TPVEQDMQLTRIANEFGTSKQALIEQLKQTPKRQSKETVNRTSQHFHQQSPQITDMEEPP 464 Query: 474 -----------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + E AL++ +I P +L++ + + E Q L + Sbjct: 465 LTGDDAAFSSNQQSTNQIEQAERALIMAMIKSPQVLEQVSDT-TGFAFVHPEYQLLMMLI 523 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 +Q +F + + + + + +DR D + L Sbjct: 524 AIYQKQQAHFDLAQFMDFIQKPELNQRILAIDRTFGDLAVEPG-----------AISDYL 572 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + Q + +++ I + + K L + L + Q ++ Sbjct: 573 RIIMHDAPVEAQIKTLQQAIDVAKQQHDDNKLLQLTTELINIKKQRNK 620 >gi|255530191|ref|YP_003090563.1| DNA primase [Pedobacter heparinus DSM 2366] gi|255343175|gb|ACU02501.1| DNA primase [Pedobacter heparinus DSM 2366] Length = 660 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 155/670 (23%), Positives = 273/670 (40%), Gaps = 61/670 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ I ++G +V +R T CPFH+EKTPSF+ + +KG Y Sbjct: 2 INQDTINKIMDTARIEEVVGDFVALKKRGT-----SLIGNCPFHNEKTPSFNVSVTKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 CF C GD + F+ S+ E+++ LA + + P+ + + + L + Sbjct: 57 KCFGCGKGGDAVHFIMDHEKYSYPEALKYLAQKYNIEVEETVQSPQNIEAQNARESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F + L D R Y ERG ++ F+LGY+PD +L ++ G Sbjct: 117 SEYAAGYFANELWTGNDGRAIGLSYFKERGFREDILKKFQLGYSPDVWDALIQNAVGAGH 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 EE + + GL I D YDRFR R++FPI + G+VI FGGRTL ++ KY+NSP Sbjct: 177 KEEYLEKTGLAIRNDKG-KLYDRFRGRVMFPIHNFTGRVIGFGGRTLKTDKNVPKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A ++ LVEGY DVL++ QAG++NVV+S Sbjct: 236 ESDIYHKSNVLYGLYHAKKAIR----------DQDNCYLVEGYADVLAVHQAGIENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + + + +DGD G++A+ + +D+ L G V VL G Sbjct: 286 SGTSLTTEQIRLIGRFTENVTILYDGDAAGIKASLRGLDM---ILEEGLNVKVVLFPDGH 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS++ G F++ I + + + P +RA + + I I D Sbjct: 343 DPDSYMHHVGSGEFKQYIEGNRRDFILYKATILLKEAGTDPIKRAGIIRDIIESIAKIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------------RHRDQK 460 + + LQ + ++E + K A + + Sbjct: 403 DIKAAVFIRECSSLLQVEERILLSELNKMRAAKLKKASGGSSSPQSQSFQQHQQAQQHAE 462 Query: 461 GPSQRLMQSSLVKGKLSKKPS-----LREAALLLTLINHPA------------ILQEQYQ 503 GP L ++ + + ++E ++ L+ + I Q Sbjct: 463 GPPDNLFENPGPYEDPGPETAASNDLIQEQEIVRLLLAYGHELVNWDGIDNMYIGSFIIQ 522 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 L D+ +++ + + + + + + + W Sbjct: 523 NLTDVVFEDQLCSGIIENYREEIENGHLPVASQFIKSPDRNIAELAITLSTSPYILSENW 582 Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + D + + + + ++ I K+I T E + Sbjct: 583 ENKHNIYVRDETVNLKATILGGLFHLKKTKIAGILSAISKEIKTETDPVNLEILMQRFVL 642 Query: 621 LHEVHIQIHQ 630 + V +I + Sbjct: 643 MKGVEREISK 652 >gi|319953724|ref|YP_004164991.1| DNA primase [Cellulophaga algicola DSM 14237] gi|319422384|gb|ADV49493.1| DNA primase [Cellulophaga algicola DSM 14237] Length = 661 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 151/664 (22%), Positives = 262/664 (39%), Gaps = 64/664 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG YV + +N + PF DE++PSF + K + Sbjct: 2 ISKSTIDKVYETARLEEVIGDYVQLKKSGSN-----FKGLSPFTDERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KE+ + + + Sbjct: 57 KDFSSGKGGNVVAFLMEHEHFTYPEAIKHLAKKYNIEIEETEQNDEQKEQANERESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L N + Y ERG I+ F LGY D+ S +KG+ Sbjct: 117 SEYAQKYFSDILWNTELGKAIGLSYFKERGFTEETIKKFALGYCLDNWDSFTNAALEKGY 176 Query: 179 SEEKIIEAGLLID-----GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VK 232 + + + GL I ++ +DRF+ R++FPI+S G+V+ FGGR L+ + K Sbjct: 177 QIKYLSDTGLTIVKEDAANPANSKKFDRFKARVMFPIQSLSGRVLGFGGRILTNDKKAAK 236 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPE+ ++HK K LY + A + K LVEGY DV+ Q G++ Sbjct: 237 YLNSPESDIYHKSKVLYGIYHAKQAIAK----------EDNCYLVEGYTDVIQFHQRGIE 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 NVV+S GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V Sbjct: 287 NVVASSGTALTPEQIRLVNRLTKNITVLFDGDAAGLRASLRGIDL---ILEQGMNVKICS 343 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 GEDPDSF R + + + + + P +RA+ + N I Sbjct: 344 FPEGEDPDSFARANNLEEVLEYLKTNSKDFIQFKASLLIKEAESDPVKRADTVRDIVNSI 403 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SS 470 + I D+ + Y Q + + + + + ++ ++ + Sbjct: 404 SKIPDRIQKEIYIQECAQIMNISESVLFNTLAQIDKKEVSDTHKKVKEEQKAQVFNVVKN 463 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL------------------------- 505 G+ E ++ L+ + QE + Sbjct: 464 EEVGQKVDVQFELERKIIEILLLYGNSPQEFEDLILKENEKGDLELEPEKIEAKVYEKIF 523 Query: 506 -----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 +I N + ++S L + E + F L + E+ L + + Sbjct: 524 LDLQDDEIELGNENFRNIYSKLIQELNENENFSINTFIAPLDQEMVSEISSILMEEEKYM 583 Query: 561 GLWSATTEANIVDVRQGYQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 A E Q L R L+ R+ ++ + ++ E + Sbjct: 584 LHDWARKEIYPKKKEVTIAQLTNETILTLRCFLIKRRINALQNETTKLEND-NREILEEI 642 Query: 618 ISIL 621 ++ + Sbjct: 643 MNYI 646 >gi|171059242|ref|YP_001791591.1| DNA primase [Leptothrix cholodnii SP-6] gi|170776687|gb|ACB34826.1| DNA primase [Leptothrix cholodnii SP-6] Length = 598 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 158/608 (25%), Positives = 246/608 (40%), Gaps = 49/608 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI+DLL I ++G+ V + N Y CPFH EK+PSF + +K FY Sbjct: 2 IPQGFIQDLLARADIVAVVGRSVQLKKTGAN-----YSGLCPFHAEKSPSFTVSATKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK------IQTD 116 +CF C G+ + FL G +F+++V LA G +P + E++EK Q Sbjct: 57 HCFGCGANGNAIGFLMEASGMTFVDAVHELAQEVGATVPEENTSPEQREKAAQARAQQLT 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L A + LK + + YL RG+ F LGYAP + L + Sbjct: 117 LTELQAQAAAHYRKQLKAS--PKAIDYLKRRGLTGEIAARFGLGYAPPGHHGLASAFA-R 173 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + +++D +DRFR+R++FPIR+ +G++I FGGR L KYLNS Sbjct: 174 YDDPLLVESGLVILDEGQDQRRHDRFRDRIMFPIRNVKGEIIGFGGRVL-DDSKPKYLNS 232 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY + A ++ +++ EGYMDV++L Q G V+ Sbjct: 233 PETPVFVKGHELYGLYEARQAIR----------QRGHVLVTEGYMDVVALAQLGFDQAVA 282 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T ++ L + + ++V FDGD+ G RAA +A++ VL F+ L Sbjct: 283 TLGTACTADHVQKLVRHTDQVVFSFDGDNAGRRAAMRAMEAVLPFATDTRSFRFLFLPAE 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AFE+ I E+LPL + + + TP+ RA L + + Sbjct: 343 HDPDSYVRAEGAEAFERRIAEALPLSSQMLQVAGADCDLVTPEGRARLVAQAEPLWRALP 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS------- 469 LR + QL + G G PS Sbjct: 403 AGVLRMQMVNEFAQ-VAQLNAADLAARWGAGPPRAPAQSQEQPYAPSYPSTPGRGKFQRR 461 Query: 470 --------------SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-E 514 + G E L+ D+ + Sbjct: 462 DGRPGKDSDLMAQLASRAGGRRPNAHRPEDRAAWLLLQRSEWWAGLSGADHDLLCELPGW 521 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVD 573 +L+ L +E + E+ L + + +D ++ + I Sbjct: 522 HGELFRHLDQMHMESEPLSWPELRDTLVQFEWCSTAIALVDAAIQGIEPLLEDLQPVITQ 581 Query: 574 VRQGYQQA 581 +R QA Sbjct: 582 IRGAVPQA 589 >gi|312863358|ref|ZP_07723596.1| DNA primase [Streptococcus vestibularis F0396] gi|311100894|gb|EFQ59099.1| DNA primase [Streptococcus vestibularis F0396] Length = 603 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 153/644 (23%), Positives = 266/644 (41%), Gaps = 56/644 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+D+ I ++IG+ V +R N Y CPFH EKTPSF+ + + Sbjct: 1 MVIDKALIEDIKSSTNIVDVIGEVVSLNRAGRN-----YLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD-LIR 119 FY+CF C GD FL SF ESV+ LA G+ + + P+ +++ Sbjct: 56 FYHCFGCGKSGDVFKFLEEYRQISFQESVKVLADRLGIAVTIDAPRQSQQQNSPNQAFYD 115 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L + YL ERG+ ++ F++G APD L + + +K Sbjct: 116 LHEDALKFYHAVLMTTKIGEAARAYLYERGMTDDLLKTFQIGLAPDEPDYLHQSVSKKYD 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 E S +D F+NR++FP+++ G+ I F GR +K + KY Sbjct: 176 EEVLTESGLFN--LSESNRLFDTFKNRIMFPLKNEFGKTIGFSGRVWTKEDIEKGQAKYK 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+ T +F+K LY+ A +QK + + L+EG+MDV++ +AG N Sbjct: 234 NTRATRIFNKSYELYHLDQAKPVIQK----------THEVYLMEGFMDVIAAYRAGHVNA 283 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L KL+ +IVL +DGD G A K+++L+ + V + Sbjct: 284 VASMGTALTPEHVNRLRKLTKKIVLTYDGDKAGQNAIAKSLELLSDFQVD-----IVKIP 338 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +++ + A KL+VES W + + + + + I Sbjct: 339 DNMDPDEYLQKTSEEALGKLLVESRISDVEFWIGQLKPANVDNLQAEIAYVEQIAKIIAK 398 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS---- 470 + Y + D L + + R +N + S +SS Sbjct: 399 SPSVTAQNSYISKVADLLPDFDFFQVEQAVNNERLTMRNQQTAQLSAASNSAYESSASGF 458 Query: 471 -----LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L E L ++NHP IL + + + EL++L+ ++ Sbjct: 459 RGTVKLPSTPKITGLRRAENQLFHRMLNHPMILNDYRMR-EEFFFQTPELEELY-YILKQ 516 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + Q + + ++L+++ E ++ +V QA+ Sbjct: 517 DGQIDTVALSLLSQEVQTAYY-QVLEEI-----------LPPETSLEEV-----QAIEER 559 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + L + + KQI + + G+ + + +L + Sbjct: 560 RNHFLREQDFRKQSKQIRESSNHGDVDAAVEALQMLIAQKRDME 603 >gi|326335634|ref|ZP_08201821.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692400|gb|EGD34352.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 654 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 168/669 (25%), Positives = 289/669 (43%), Gaps = 63/669 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + I + +IG ++ R + Y PF +E+TPSF + SK + Sbjct: 2 ITKESIDKVYDAIRVEEVIGDFIQLKRAGSG-----YKGLSPFTNERTPSFSVSPSKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL S++E++ LA + L E+K K + L + Sbjct: 57 KDFSSGKGGNAIAFLMEYEHFSYVEAIHYLAKKYHIELEETQQNEEEKNKANEKEGLYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+FH +L + + + Y ERG I+ F+LGY+PD+ + + KG Sbjct: 117 SEFARDYFHRTLLESEEGKALGLTYFKERGFTDEMIQTFQLGYSPDNWTAFTDEALSKGM 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 + + GL I +++ DRF+ R++FPI S G+V+ FGGR LS+ + V KYLNSP Sbjct: 177 KLSFLEKTGLTIIKEDNRK-IDRFKGRVMFPILSMSGRVLGFGGRILSQEKKVAKYLNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY F A ++ K LVEGY DV+ L Q G++NVV+S Sbjct: 236 ESDIYHKSNILYGIFQAKPFISK----------EDICYLVEGYTDVIQLYQRGIKNVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ +L+P I + +DGD GLRAA + +D++L G V GE Sbjct: 286 SGTALTQEQIRLIRRLTPNITVLYDGDSAGLRAAIRGVDMILAE---GMNVRICTFPEGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + Y ++ E + N P +RA+ + I+ I D Sbjct: 343 DPDSFAKEYSLEEIQEYFKEHTQDFIRFKASLLMKETQNDPLKRADTIRDMIESISKISD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + ++ + T + + A ++ + Q + ++ Sbjct: 403 PIKREIYVRECAQIMEISEEVLFTSLAQINQRQLIKANQELKRAQKETPSQVTENPIAVN 462 Query: 478 KKPSLREAALLLTLINH---------------PAILQE----------QYQEL------A 506 L E L+ L+ + P +E Y++L Sbjct: 463 PVTYL-EKDLIKYLLLYGQKECNFEEKFLYYDPDTGEEKIQETTQKMKVYEKLFLELQAD 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS-A 565 +I E ++L++F + + E I ++ L+ Q D L A Sbjct: 522 EIELSTPEFRELYTFFINQYQEG-LQDISLIINKIPPS-MASLVASFQAQEEDLHLHDWA 579 Query: 566 TTEANIVDVRQGY---QQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILISIL 621 + + D + ++ L R RL+ ++ E + ++I + + G+ + + Sbjct: 580 RKDVVVKDKDEDLPYAITSIILNLRKRLIDKKIESLREEIITIENEDGDPSWSLQEVIEY 639 Query: 622 HEVHIQIHQ 630 + + I + Sbjct: 640 NTLKNIIGR 648 >gi|229824057|ref|ZP_04450126.1| hypothetical protein GCWU000282_01361 [Catonella morbi ATCC 51271] gi|229786411|gb|EEP22525.1| hypothetical protein GCWU000282_01361 [Catonella morbi ATCC 51271] Length = 632 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 156/659 (23%), Positives = 280/659 (42%), Gaps = 62/659 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P D I+ + I +I QYV +R N Y CPFH++ PSF + K Y Sbjct: 4 IPNDIIESVKKEADIVAIINQYVALTKRGNN-----YTCSCPFHEDNNPSFSVSPDKQIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDLIRLI 121 CFSC G+ FL + G SF E+V+++A ++ + L + + + L+ L Sbjct: 59 KCFSCGRGGNVFGFLQEMEGISFPEAVKKVAELSNIALDSRYFETGQAVSQPHQRLLDLH 118 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A DF+H L + + + YL +R + + F LG APD+ L ++L + GFS+ Sbjct: 119 EKARDFYHFYLTQTVAGESAYAYLKQRELKEETLSDFHLGLAPDNPQLLIQYLSEAGFSQ 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-----ESVKYLN 235 ++++++G I + S DRF R+IFP+ +G+ +AF GR + KY+N Sbjct: 179 DEMLQSG--IFYEASQGLMDRFHGRIIFPLEDRQGRTVAFSGRIYQADSGDEQKVAKYVN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHK +Y+F A ++++ + +++ EGY+DV++L QAG V Sbjct: 237 SPETDIFHKSSLIYHFAQARPHIRRL----------NQVLICEGYLDVIALSQAGFPQAV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +++GT+LT L L K++ I+ FDGD G +A +A +L L V V + Sbjct: 287 ATMGTSLTSQHLSQLGKVTQEIIFAFDGDAAGQKATARAFELSLTLPRH--TVKAVAIPG 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD +I+ G +F+ LI +++P + L + ++RA L + + + Sbjct: 345 KMDPDEWIKSRGADSFKSLINQAIPRYEFLKNYLQQEYQLADLEQRALYINRLLDLVAQL 404 Query: 416 KDQKLRYYYSQAIRDR-----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 R QA+ + L Q+ + + + K+++ + K S Sbjct: 405 PSPIERTMRLQALAEEFGLDLAMLEEQLAQVSYRQRKDQAKESDSPKQDSADKWAKAHSS 464 Query: 465 RLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAILQEQYQELADIRYDN 512 +L + KP + E +L LI + Q + + + Sbjct: 465 GFSDQALPSKPVQAKPGVLDGQIKSLKAYHCERYILSNLIFNEPAWQFIEGLEQPLLFVH 524 Query: 513 NELQKLWSFLFS-DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 Q ++ L + + I + L L + +E + Sbjct: 525 PSAQAIYYQLEHFYYEKGGRLPLNGILDVEASPDEQQYLASL----IWDHAQTDYSEQAM 580 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 D + A Q +E++ ++ Q +G+ K + + + Q+ + Sbjct: 581 QDCLKTIDAAFT--------EIQLKELQTKLKQAQIRGDKTKMNEYLVEILRLSRQLKK 631 >gi|320537365|ref|ZP_08037320.1| DNA primase [Treponema phagedenis F0421] gi|320145830|gb|EFW37491.1| DNA primase [Treponema phagedenis F0421] Length = 593 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 164/638 (25%), Positives = 276/638 (43%), Gaps = 55/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + + +L+ Y +RR D+W CCPFH+EKTPSFH K Sbjct: 3 KITAQTIDAVNDKTDLVSLVENYTHLERRG-----HDWWGCCPFHNEKTPSFHVVPDKKM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 YYCF C G + FL + F E+V+RLA AG+P+ + E + L+ Sbjct: 58 YYCFGCGSGGSTIKFLMEMEKIPFAEAVERLAKRAGIPVEYEGGGYQPSEDSVFKDQLLE 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + T FHH L + K YL R + IE FKLG+AP+ RY L + L +KG+ Sbjct: 118 LYDRITKTFHHFLMHTEQGKPALDYLKSRAVSDSVIESFKLGFAPEQRYWLFKFLTKKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S E + +GL + ++ + R+I+PI + GQVIAFGGR LS KYLN+ + Sbjct: 178 SAEFLARSGLFARKNPESSFFA---GRIIYPITNRHGQVIAFGGRILSGN-GPKYLNTAD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + KG+NL+ F+ AL ++K + I+ EGYMDV++ QA +Q ++ L Sbjct: 234 IPQYKKGENLFAFYQALPEIRK----------TKSAIICEGYMDVMAFHQAEIQTAIAPL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q+ L+ + + LCFD D G A YKAI L G V + + +G+D Sbjct: 284 GTALTEEQVHLIHSFADTVYLCFDSDTAGQAATYKAIKLCR---TSGLDVRVLNIQKGKD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + G + L+ ++ + L K + TP+ + L I ++ Sbjct: 341 PADILLNEGNDGLKTLLKNAILDSNYLMKIASNTYDLGTPEGKHNAAAFLFPYIEVLESD 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + ++ R++ P + Q + V K S Sbjct: 401 IQRESTINKAASAFGISQRALYADYQN---------RNQATPSPVTQPKQRASVGIKRS- 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E ++L ++ +P + ++ L +++ + L+ L + + + Sbjct: 451 ----AELRVVLAVVANPELFKKLRYSLTADHFEDELAKDLFIVLEECYRADAD-TYDSLF 505 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R L+ + + + + + + KR +L ++K+ I Sbjct: 506 SRCQNEELKNLISE-----------TIISGEFSQNAEKIVDDGIRFIKR-NILFKRKDAI 553 Query: 599 EKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIES 633 ++ Q++ K AE+ L+S + ++ ++ Sbjct: 554 VGRLRQLSGKPHAEELEQLVALMSEKQRIDDELQALKE 591 >gi|315225147|ref|ZP_07866964.1| DNA primase [Capnocytophaga ochracea F0287] gi|314944830|gb|EFS96862.1| DNA primase [Capnocytophaga ochracea F0287] Length = 656 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 154/673 (22%), Positives = 282/673 (41%), Gaps = 69/673 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + + +IG +V R +N Y PF +E+TPSF + K + Sbjct: 2 ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + E+K + + L + Sbjct: 57 KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETQQSSEEKAQADERESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F +L N + Y ERG I+ F+LG++PD + ++ KG+ Sbjct: 117 SEYAQQYFQDTLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDNALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 E + + GL I N +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ + Q G++NVV+S Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ +L+P I + +DGD GLRA+ + +DL L G V G+ Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPEGD 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + N P ++AE + I+ I D Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + + Q + + + + ++K + +++Q+ K + Sbjct: 402 LIKREVYVRECATIMDISEQVLFSTLAQILKKDFYEGQKVERKQSTMQVVQTPEETQKRT 461 Query: 478 -KKPSLREAALLLTLIN--------------------------------HPAILQEQYQE 504 + + E L+ L++ H + E + Sbjct: 462 INRLEVLEHDLIKILLSKGNEDCVFTDTILVEEENGDLKEKQVQQTLKVHEKVFLELQE- 520 Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQLDRQ 556 +I + N + ++++ L + F+E + L + + + LD Sbjct: 521 -DEIEFANPDFKQIYDQLMTKFLENDSYDVNRFANELPVELSAKVSDLKMEDEFRHLDNW 579 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 ++ + + + ++ + + L L++ E+I +I K E+ Sbjct: 580 LKR-DIVAKEKDKDLNRIISDIILNIRLLLIMHLINNLAEKIRTKITDEERKSIMEEVIG 638 Query: 617 LISILHEVHIQIH 629 + + +++ Sbjct: 639 YNQLKTILGKRLN 651 >gi|332686633|ref|YP_004456407.1| DNA primase [Melissococcus plutonius ATCC 35311] gi|332370642|dbj|BAK21598.1| DNA primase [Melissococcus plutonius ATCC 35311] Length = 628 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 150/651 (23%), Positives = 279/651 (42%), Gaps = 55/651 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++ I+++ I +++ QYV + N Y CPFH+E++PSF + K + Sbjct: 5 IPQEVIEEIRHQTNIIDIVSQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDL 117 +CF C G +F+ + G SF ++V+++ + + + P+ + + + + L Sbjct: 60 HCFGCGKGGTIFNFIQEIEGISFPQAVKKVVEMENLSVSIDLNPIQATETPQMRQKRQ-L 118 Query: 118 IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I + + A + +HH L + YL ERG+ I+ F +G+AP R L+ + Sbjct: 119 IEVHKKAVELYHHVLVNTKAGEEALKYLIERGLTREIIDTFMIGFAPMERDFLQRVFQND 178 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-----V 231 F + +GL + D S+DRF R++FPI + IAF GR L + Sbjct: 179 QFDVSILDASGLFVKRDTG-ESFDRFYQRIVFPIYDVQNNPIAFSGRLLKTKQFIGENLP 237 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET+LF+K + L+NF A Y++K + + L EG+MDV++ Q+G+ Sbjct: 238 KYLNSPETLLFNKRETLFNFNQARKYIRK----------ENTVFLFEGFMDVIAAWQSGI 287 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 N ++S+GT+LT Q+R L K+S ++VLC+DGD G+ A +AI L+ ++ + Sbjct: 288 YNGIASMGTSLTNQQIRYLEKVSEKLVLCYDGDQAGIEATNRAIQLLNQQSR--LMLSVL 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKL-IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 L DPD ++R YG +F+ L E + ++R+ E+ + L Sbjct: 346 NLPEKLDPDDYVRKYGVDSFKTLATHEQQTVFSFKMFYHRQSRNMKNEKEQIDYVQTLLG 405 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + R +Y Q + + + + + R ++ + Sbjct: 406 ELLLVLSPLERDHYMQQLAKQFNLSLHSLEEQFHQLKQKQRVEQRATKKQLAIKEPTVKR 465 Query: 471 -----------LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + E L+ L+N P ++++Q + + ++ Q+L+ Sbjct: 466 KQTYSLFQSMQQQNKLPLSQEEKAEQTLIYRLMNEP-LVRDQINNENNFSFIHDNYQELY 524 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 L +E F + L +L+ ++D+Q+ + Sbjct: 525 LLLNVYLMEHNSFHLADFVNYLQNDEIKKLVIEIDQQIIS------------EKSSEREI 572 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L R L + E ++Q G+ L + + Q+ + Sbjct: 573 NDLLYVIRSAKLKEKITEKKQQQKNAEKLGDKLLAEELTIEIIHLVQQLDK 623 >gi|146321289|ref|YP_001201000.1| DNA primase [Streptococcus suis 98HAH33] gi|145692095|gb|ABP92600.1| DNA primase (type) [Streptococcus suis 98HAH33] Length = 596 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 143/636 (22%), Positives = 258/636 (40%), Gaps = 50/636 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I ++ + I ++IG+ V + N Y CPFH EKTPSF+ + K FY Sbjct: 2 LSKDKITEIKQALNIVDVIGETVALTKAGRN-----YVGLCPFHGEKTPSFNVIEDKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C GD F+ + G SF ++ LA AG + V + EK+ L + Sbjct: 57 HCFGCGKSGDVFKFVEEVRGVSFADAAAILAEKAGFQIDVTPSYHQEEKRVSPHQVLYDI 116 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+H L + YL +RG+ I+ F+LG AP + L + L + Sbjct: 117 HRDAAKFYHALLMTTKMGEEARAYLHQRGLTDDVIKTFQLGLAPAEQNILYQKLSGQYDE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-----KYL 234 E + + YD F+ R+IFP+ G+++AF GR ++ KY Sbjct: 177 ESLLNSGLFN--PSENNIIYDAFQARIIFPLADEYGRIVAFSGRIWTEENRNNKQLAKYK 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T +F+K LY+ A ++K L+EG++DV++ + G+ N Sbjct: 235 NSRSTAIFNKSYELYHLDKAKAVIKKQ----------RETYLMEGFLDVIAAHRVGIDNA 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT + L K +IVL +DGD G A KA+D + + V L Sbjct: 285 VASMGTALTREHVAHLAKFCKKIVLTYDGDKAGQAATMKALDELQDFQVE-----IVSLP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A ++++ +S + + + + + E + I Sbjct: 340 DNMDPDEFLQKNSEEALQQVLTKSRISDVEFLIQYLKPENPDYLQMQIEFVDKIAPIIAK 399 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVK 473 + + + D L + + R ++ R + + + + + Sbjct: 400 VSSITAQNSDIYKVADLLSDFDYNQVEQAVNAVRLNQRQERTQQVFQSQTGQSYLPPVQT 459 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E LL ++ HP IL E ++ D + ELQ ++ + E F Sbjct: 460 IARITSLIRTENHLLYRMVEHPYILNE-FRLREDFYFATPELQAIYD-MLKKSGEITSFE 517 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +++ + + ++L +V + L + + LL + Sbjct: 518 LSQLNDSAQQAWYRMQEERL-----------------PDEVSPHEIEELEIRRDKELLKK 560 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + ++I + + G A+ + L + Q+ Sbjct: 561 ENQHLARKIREHSHVGNADIALDELQKLLDRRRQME 596 >gi|212219306|ref|YP_002306093.1| DNA primase [Coxiella burnetii CbuK_Q154] gi|212013568|gb|ACJ20948.1| DNA primase [Coxiella burnetii CbuK_Q154] Length = 572 Score = 324 bits (831), Expect = 2e-86, Method: Composition-based stats. Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 23 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 78 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FILL 136 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560 Query: 602 IAQVTAKGEAEK 613 + + + K ++ Sbjct: 561 LIKASHKETLDE 572 >gi|186683726|ref|YP_001866922.1| DNA primase [Nostoc punctiforme PCC 73102] gi|186466178|gb|ACC81979.1| DNA primase [Nostoc punctiforme PCC 73102] Length = 682 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 160/692 (23%), Positives = 279/692 (40%), Gaps = 77/692 (11%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I+++ + I +++ +YV +R D+ CPFHDEK+PSF + Sbjct: 1 MQIPRLHPDTIEEVKLRADIVDVVSEYVVLRKRGK-----DFVGLCPFHDEKSPSFTVSQ 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 +K YYCF C G+ + F+ L SF + V LA VP+ ++P+ ++ + Sbjct: 56 TKQMYYCFGCQAGGNAIKFVMELGKRSFADVVLDLARRYQVPVQTLEPEQRQELQRQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ + F+ H+L+ ++ ++ Y R + I+ F LGYAP +L + Sbjct: 116 REQLYEVLATSAQFYQHALRQSQGQKALQYLQSNRQLKEETIQQFGLGYAPAGWETLYRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + + +AGL+ YD FR+RL+ PIR +G+VIAFGGRTL E Sbjct: 176 LVEDKHYPAQILEKAGLIKPRKEGGGYYDVFRDRLMIPIRDVQGRVIAFGGRTL-TDEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF KGK L+ A + + ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFSKGKTLFALDQAKGGI----------SQLDQAVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTAL+ Q+RL+ + + ++VL FD D G A +AI ++ ++ Sbjct: 285 NNAVASLGTALSLEQVRLVLRYTESKQLVLNFDADKAGTNATERAIGEIAELAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFE----------------------------KLIVESLP 380 + L G+D D F+ + ++ +L+ + Sbjct: 345 KILNLPNGKDADEFLNTHNPEEYQALAAPIKRLSTLEKFRFRIDELSPSERKELLETAPL 404 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 +D K+ ++R + ++ L + I + R YY + L + I Sbjct: 405 WLDWQIKQIIQDRDLKQATDFQQVTQQLVKLLKKIANSDTRNYYVSYCAEILSLGDTRLI 464 Query: 441 TEHSGYGRYWKKNA-----RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 A + K S EA LL ++ P Sbjct: 465 PLRVENLLTQIAPAAAAYTKPVSAKQAWGSSKVSQSPLPTERSLLEHAEALLLRIYLHCP 524 Query: 496 AILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKY-----------FLPEEIHQRLC 542 Q EL + +++ + + LW + ++ RL Sbjct: 525 EQRQAIIAELEERDLQFSLSHHRFLWQQILEISSSDGETRNWASPRFANASQPDLISRLQ 584 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + + + I+ Q Q A+A +L ++ + Sbjct: 585 DHFLE--FSSEMGLISHLFHVNEKNQKEILRTPQVVQAAIAC-MDLVMLEKRYRHFLELW 641 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q + E E+ + I++ +I+ Q Sbjct: 642 QQTDPEAEPERYQSYYQAFYAEKIKLQKIDRQ 673 >gi|325831471|ref|ZP_08164725.1| DNA primase [Eggerthella sp. HGA1] gi|325486725|gb|EGC89173.1| DNA primase [Eggerthella sp. HGA1] Length = 626 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 153/644 (23%), Positives = 256/644 (39%), Gaps = 44/644 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +IG+ +R D+W CCP H+EKTPSF + + + Sbjct: 5 ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD F+ SF E+V+RLA A + + + + L + + Sbjct: 60 HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 119 Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F+H L YL RG+ + ++LG+AP L HL KGF Sbjct: 120 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++++A + ++ DRF NR++FPI +G+ IAFGGR + KGE KYLNS ET Sbjct: 179 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHK + LY A + S+ ++VEGY DV++L +AGV+N V++LG Sbjct: 237 PLFHKSQVLYGMDKAKAAMA----------STGIAVVVEGYTDVIALHEAGVRNAVATLG 286 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353 TALT +RLL + + IV FDGD+ G RAA +A+ + + V L Sbjct: 287 TALTMRHIRLLSRHAQHAIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 346 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP F+ G +KLI + PL+ +R + RA + Sbjct: 347 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLGRAEGRAAALADALQVLA 406 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 IKD L Y+ I ++ Q I + + R + + Sbjct: 407 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPKVEGERDDEGAPDGFEQAAAPQRP 466 Query: 474 GKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + + E LL P + LA ++ + + E Sbjct: 467 ARSLPRAEVNRRRFERQLLTLAARRPDLALLHADALAQTQWHEQAHAVVAQSMLDALAED 526 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + E + L + + A + + LA+ Sbjct: 527 PAASSARLVT--------EASRALPAAAAVLTSGTVSETAAPEQLAAFLVEELAIGDAED 578 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + QIA ++ + ++ +L + + + + + Sbjct: 579 AVG----ALRAQIAD-PSRLDPDELEMLYETVAAMQQDLKRRRA 617 >gi|212212054|ref|YP_002302990.1| DNA primase [Coxiella burnetii CbuG_Q212] gi|212010464|gb|ACJ17845.1| DNA primase [Coxiella burnetii CbuG_Q212] Length = 572 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 169/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 23 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 78 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560 Query: 602 IAQVTAKGEAEK 613 + + + K E+ Sbjct: 561 LIKASHKETLEE 572 >gi|215919213|ref|NP_820578.2| DNA primase [Coxiella burnetii RSA 493] gi|206584097|gb|AAO91092.2| DNA primase [Coxiella burnetii RSA 493] Length = 572 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 23 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 78 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKQFAIGYAPNAWENLRPFAKNSKTQSQ 194 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560 Query: 602 IAQVTAKGEAEK 613 + + + K ++ Sbjct: 561 LIKASHKETLDE 572 >gi|256819747|ref|YP_003141026.1| DNA primase [Capnocytophaga ochracea DSM 7271] gi|256581330|gb|ACU92465.1| DNA primase [Capnocytophaga ochracea DSM 7271] Length = 656 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 154/671 (22%), Positives = 282/671 (42%), Gaps = 65/671 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + + + +IG +V R +N Y PF +E+TPSF + K + Sbjct: 2 ISKNTIDKVYDQMRVEEVIGDFVQLKRAGSN-----YKGLSPFSNERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + E+K + + L + Sbjct: 57 KDFSSGKGGNAIAFLMEHEHFTYPEAIRYLAKKYHIDIEETQQSSEEKAQADERESLYIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F SL N + Y ERG I+ F+LG++PD + + KG+ Sbjct: 117 SEYAQQYFQDSLFNTEAGKAIGMTYFKERGFTEETIQKFRLGFSPDEWTAFTDTALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 E + + GL I N +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 QLEFLEKTGLTIV--NGDRKFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKQAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ + Q G++NVV+S Sbjct: 235 ESEIYHKSKVLYGIFFAKQAIAK----------ADNCYLVEGYTDVIQMHQKGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ +L+P I + +DGD GLRA+ + +DL L G V G+ Sbjct: 285 SGTALTQDQIRLIHRLTPNITVLYDGDAAGLRASIRGVDL---ILEQGMNVKVCTFPEGD 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + N P ++AE + I+ I D Sbjct: 342 DPDSFARKTAYEDLVLYLENNATDFIRFKASLLMQEAQNDPIKKAETIRDMVESISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y + + Q + + + + ++K + +++Q+ K + Sbjct: 402 LIKREVYVRECATIMDISEQVLFSTLAQILKKDFYEGQKVERKQSTMQVVQTPEEAQKRT 461 Query: 478 -KKPSLREAALLLTLI----------------------------NHPAILQEQYQEL--A 506 + + E L+ L+ + ++ + EL Sbjct: 462 VNRLEVLEHDLIKILLSKGNEDCVFTDTILVEEENGDLKEKQVQQTLKVYEKVFLELQED 521 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQLDRQVR 558 +I + N + ++++ L + F+E + L + + + LD ++ Sbjct: 522 EIEFANPDFKQIYDQLMTKFLENDSYDVNRFANELPVELSAKVSDLKMEDEFRHLDNWLK 581 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + + ++ + + L L++ E++ +I K E+ Sbjct: 582 R-DIVAKEKDRDLNRIISDIILNIRLLLIMHLINNLAEKVRTEITDEERKSIMEEVIGYN 640 Query: 619 SILHEVHIQIH 629 + + +++ Sbjct: 641 QLKTILGKRLN 651 >gi|299136116|ref|ZP_07029300.1| DNA primase [Acidobacterium sp. MP5ACTX8] gi|298602240|gb|EFI58394.1| DNA primase [Acidobacterium sp. MP5ACTX8] Length = 597 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 164/641 (25%), Positives = 262/641 (40%), Gaps = 58/641 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +F + + I ++G+Y+ + N + A CPFH EK+ SF+ + YYC Sbjct: 3 DNFAQTVKQQTDIVRIVGEYIKLRKSGAN-----WSALCPFHKEKSGSFYLYPATTSYYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121 F CH GD +F+ + SF E+V+ +A G+PLP P+ + ++ LI Sbjct: 58 FGCHEHGDVFTFVMKMENLSFPEAVRSVATKMGIPLPQREFNSPQEAQAAGLRKQLIDAH 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E AT +F +L + R Y+ RGI I F+LGYAPD+ +RE L + E Sbjct: 118 EAATQYFQQNLHSPEAARAREYMTGRGITPETITKFRLGYAPDNFNDMRERLSKFFSEEV 177 Query: 182 K---IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233 + + + + Y RFR R+ FPI + +G+ IAF R L KY Sbjct: 178 LRASGLFSWKEQEDGSPGPMYARFRKRITFPIMNEQGKPIAFTARALDSVDVDPKAGAKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +NSPET L+ KG+ L+N A ++ S +LVEG MD +SL GV N Sbjct: 238 MNSPETPLYTKGQVLFNLDKAKAAIK----------SKDAALLVEGQMDCISLFMNGVDN 287 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+++ GTA TE+QLR+L + + R+ L FD D G AA K + L + V + L Sbjct: 288 VIATSGTAFTEHQLRMLGRFTKRVWLNFDPDQAGANAAEKTLGL---LVEEDFDVRVITL 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DPD F+R G + + + D L +R T + + + L I Sbjct: 345 DGGLDPDRFVRERGVAEYATAVRNASRYQDFLIERARLQFPARTAEAKVKAMNFLLPHIR 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I + R +++ +L E + ++ R KG S+ Sbjct: 405 RIPNLISRNDFAENAAQKLGIESSLMRQELKQAAQQRLESVRAPQPKGVSE--------- 455 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYF 532 E LL LI P + + + +L + L Sbjct: 456 ---------IERILLCALIL-PDADSSRMLAAEQLAANPEWCTELSAATLIDVLANGPSP 505 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + LL + +EA+ + + Q AL + R L Sbjct: 506 DNP--LEAAPDAASRLLLASVLHHSS------GESEASRETLHEQVQNALHTLHQRR-LD 556 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R+ E+ IA+ T G E L ++ ++ +++ Sbjct: 557 RRLREVRTLIAEATRHGNQEVVMQLAHEKVQLDAELKRMDG 597 >gi|320459026|dbj|BAJ69647.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 696 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 141/707 (19%), Positives = 254/707 (35%), Gaps = 94/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPSRENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGHKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYTNPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRIMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSA---------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L Q+ ++ L ++N G A+ L R E+ Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNAPGGAGGGAAAVQLRPATPEEQRYATELLT 642 Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ ++ + E+ L+ + + +++Q Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLPDGEEKITLLGQITRMETARKDLQAQ 689 >gi|213692854|ref|YP_002323440.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524315|gb|ACJ53062.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 699 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 141/707 (19%), Positives = 254/707 (35%), Gaps = 94/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPSRENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGHKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYTNPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRIMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSA---------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L Q+ ++ L ++N G A+ L R E+ Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNAPGGAGGGAAAVQLRPATPEEQRYATELLT 645 Query: 601 QI-------------AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ ++ + E+ L+ + + +++Q Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLPDGEEKITLLGQITRMETARKDLQAQ 692 >gi|209363782|ref|YP_001423815.2| DNA primase [Coxiella burnetii Dugway 5J108-111] gi|207081715|gb|ABS78269.2| DNA primase [Coxiella burnetii Dugway 5J108-111] Length = 572 Score = 324 bits (830), Expect = 3e-86, Method: Composition-based stats. Identities = 168/612 (27%), Positives = 264/612 (43%), Gaps = 62/612 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI+DLL I LI V +R N Y CPFH EKTPSF + SK F Sbjct: 23 RIPQSFIQDLLSRTDIVELIQSRVAIKKRGAN-----YLGLCPFHTEKTPSFTVSSSKQF 77 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SFL A F+E+V LA G+ +P K +I D L+ Sbjct: 78 YYCFGCAAHGNAISFLMAFDRMEFLEAVTDLANQLGIEIPHETIGQSKTAEINDD-FVLL 136 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + F+ LK + +YL RG+ + F +GYAP++ +LR + + Sbjct: 137 TTISRFYQRELKRS--PTAIHYLKSRGLTGETAKRFAIGYAPNAWENLRPFAKNSKTQSQ 194 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ +DRFR+R++FPIR RG+VIAFGGR+ + KY+NSPET L Sbjct: 195 LVTHGLLVKK---ENRCFDRFRHRIMFPIRDVRGRVIAFGGRS-VGEDLPKYMNSPETPL 250 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG LY A + R ++VEGYMDV+SL Q G+ V++LGTA Sbjct: 251 FQKGNELYGLHEACKTHRPLPRA----------LIVEGYMDVVSLHQHGITYAVATLGTA 300 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L + + I+ CFDGDD G +AA++A+ L + G + F+ L +GEDPDS Sbjct: 301 TSVRHLQKLLRYTHEIIYCFDGDDAGRQAAWRALTSALPVMREGIHIRFLFLPQGEDPDS 360 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I+ G+ AFE I ++ PL ++ + + + D++A + + Sbjct: 361 LIQKIGREAFENKIDQAPPLSEVFFSHLQKEIPIRSIDDKAAFAKQALEHLRPMPRGIFY 420 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + RL + L + S + Sbjct: 421 QLLLEELAQRLTLDLSEL------------------------DSLTVAPPPMPAASTRVP 456 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L P+++ Q++ + ++ ++Q L + ++ E+ Sbjct: 457 SLAYHALSILAQAPSLVS-VIQDMTIPKSEDPQIQFLAKMVL-FLKKRPVANTGELLAF- 513 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 C LL QL T + D+ + A+ QKEE + Sbjct: 514 CPESQRRLLAQLAAY---------KTGLSEDDLAAELKDAINRLHEQH----QKEEAFQA 560 Query: 602 IAQVTAKGEAEK 613 + + + K ++ Sbjct: 561 LIKASHKETLDE 572 >gi|189439767|ref|YP_001954848.1| DNA primase [Bifidobacterium longum DJO10A] gi|189428202|gb|ACD98350.1| DNA primase [Bifidobacterium longum DJO10A] Length = 699 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 140/710 (19%), Positives = 251/710 (35%), Gaps = 100/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y + R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584 L Q+ ++ L + Q Y L Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692 >gi|46190835|ref|ZP_00120986.2| COG0358: DNA primase (bacterial type) [Bifidobacterium longum DJO10A] Length = 696 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 140/710 (19%), Positives = 251/710 (35%), Gaps = 100/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y + R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584 L Q+ ++ L + Q Y L Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 642 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 689 >gi|312792984|ref|YP_004025907.1| DNA primase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180124|gb|ADQ40294.1| DNA primase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 617 Score = 324 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 136/629 (21%), Positives = 258/629 (41%), Gaps = 50/629 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L I I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 33 ERVVEQVLSKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 87 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 88 FGCGVGGNVIHFVMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 147 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L ++ Y+ +RGI + F LG+ P++ ++ Sbjct: 148 HDCFEYFQSQLYLRKNIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 207 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + + KY+NSP+T++ Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQGPKYMNSPDTLI 263 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 264 FSKSKVLYGLNVAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSADI---LYQNGLMVKVMELENAKDPDE 368 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + + I ++ Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFKFVREYFEKILMPITNEVE 428 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + E + K Q+ S + Sbjct: 429 RQEYVKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLSEEERIKKNDI 488 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + + + + +++ L+S + + E + Sbjct: 489 D-----LLSIYVEWANKSESVRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 543 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + ++L +L + I +++ + + +++ Sbjct: 544 VNDE---KILSELTSFSSKGFETEEAAKRAIEELKTN--------------NNRMLWLKR 586 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + +G+ EK L ++ ++ + Sbjct: 587 EMLEAQKRGDTEKVLKLQMLIRKIKDRKE 615 >gi|152995073|ref|YP_001339908.1| DNA primase [Marinomonas sp. MWYL1] gi|150835997|gb|ABR69973.1| DNA primase [Marinomonas sp. MWYL1] Length = 666 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 231/471 (49%), Gaps = 21/471 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI +LL +++++ + + N Y A CPFH+EK+PSF N +K F Sbjct: 4 RIPDQFIDELLARTDLTDVVASRISLKKTGQN-----YSALCPFHNEKSPSFSLNPNKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C G+ +SF+ F+++++ LA AG+ +P + + +L++ + Sbjct: 59 YYCFGCGAGGNAISFVMEHDHLDFVDAIEVLAKDAGMEVPREQG-APDRYEQNAELLKRL 117 Query: 122 EVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ F+ L DK+ Y +RG+ ++F LGYAP +L + + + S Sbjct: 118 SESSQFYQQQLTQHPDKKKATDYLSKDRGLSGQIAKVFGLGYAPPGWDNLLKKVGTRAES 177 Query: 180 EEKIIEAGLLI-DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E+++ G+LI D YDRFR+R+IFPIR SRG+VIAFGGR E KYLNSPE Sbjct: 178 QEQLLLGGMLIEKKDQPGHYYDRFRDRIIFPIRDSRGRVIAFGGRAF-GDEKPKYLNSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + LY F A II+VEGYMDV+ L Q G+ N V++L Sbjct: 237 TPVFQKSQELYGLFEAKQ----------NTPILDQIIVVEGYMDVIVLAQHGITNAVATL 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT++ +R L+KL +++LCFDGD G AA + ++ L + +V F+ L GED Sbjct: 287 GTSVNSQHIRKLFKLVSKVILCFDGDKAGRAAAIRGLEASLPVMQDEKQVRFLFLPEGED 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDS +R GK AF + ++ L +L+ + + A+ + I I + Sbjct: 347 PDSLVRKEGKEAFNHRLEDASSLSHVLFDHARNQVTLGDEEGEAQFARNAMEMIKQIPKE 406 Query: 419 -KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 R + + D+ + R + H + +Q Sbjct: 407 LTFRSVLIRQLSDQSGIDSETLSNTVFKTRRQHTPSEGHEPTHQSHAQQIQ 457 >gi|255690500|ref|ZP_05414175.1| DNA primase [Bacteroides finegoldii DSM 17565] gi|260623952|gb|EEX46823.1| DNA primase [Bacteroides finegoldii DSM 17565] Length = 709 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 159/695 (22%), Positives = 287/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH++KTPSF+ + +KG Sbjct: 18 IDQATIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHNDKTPSFYVSPAKGLC 72 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 73 KCFACGKGGNAVHFIMEHEQMSYPEALRYLAKKYNIEIKERELSDEEKFVQSERESLFIV 132 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY DS + + QKG+ Sbjct: 133 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTDSHDAFAQEAIQKGY 192 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 193 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLANATKGVKVKYVN 251 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 252 SPESDIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 301 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G V LL Sbjct: 302 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 358 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 359 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGRDPIKRAELIGNLVQSISVI 418 Query: 416 KDQKLRYYYSQAIRDRLQQLF-----------QKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + +R Y + L + + + ++ A + Sbjct: 419 PEAIVRDVYIKECAQLLHIEDKLLVSEVAKRRETQAEKRAEQTERDRRIAERAASMPQGE 478 Query: 465 RLMQSSLVKGKLSKKPSLR---------------------------------EAALLLTL 491 + G + P + E +L + Sbjct: 479 QAGNMPAPNGDVPLPPEIAEAGYTESPFPPQEDNYASFIPQEGKEGQEFYKFERLILQAV 538 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L D+ + N +++ S + + + Sbjct: 539 VRYGEKVMCNLTDEEGNEIPVTVIEYVVNDLKEDDLAFHNPLHRQMLSEAAAHMHDSAFI 598 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 599 AERYFLAH-PDPIISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYELVPMLMINFKYAI 657 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 658 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 692 >gi|322688669|ref|YP_004208403.1| DNA primase [Bifidobacterium longum subsp. infantis 157F] gi|320460005|dbj|BAJ70625.1| DNA primase [Bifidobacterium longum subsp. infantis 157F] Length = 696 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 140/710 (19%), Positives = 252/710 (35%), Gaps = 100/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584 L Q+ ++ L + Q Y L Sbjct: 583 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 642 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 643 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 689 >gi|317482521|ref|ZP_07941536.1| DNA primase [Bifidobacterium sp. 12_1_47BFAA] gi|316915943|gb|EFV37350.1| DNA primase [Bifidobacterium sp. 12_1_47BFAA] Length = 699 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 140/710 (19%), Positives = 252/710 (35%), Gaps = 100/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584 L Q+ ++ L + Q Y L Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692 >gi|298480246|ref|ZP_06998444.1| DNA primase [Bacteroides sp. D22] gi|298273527|gb|EFI15090.1| DNA primase [Bacteroides sp. D22] Length = 706 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 160/694 (23%), Positives = 291/694 (41%), Gaps = 91/694 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 16 IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 71 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S + + QKG+ Sbjct: 131 NNFARDYFQNILKNHIDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAFAKEAIQKGY 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 357 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416 Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461 + +R Y + L ++ + E + R + Q Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTATMSQGT 476 Query: 462 PSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTLI 492 PS+ + +GK ++ E +L ++ Sbjct: 477 PSENAPMPNGDIPLPPEIDNGYTEVPPALQEDNYASFIPQEGKEGQEFYKFERLILQAVV 536 Query: 493 NHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + +++ +L ++ + N +++ S + + + Sbjct: 537 RYGEKIMCNLTDEEGNEIPVTVIEYVINDLKEDELAFHNPLHRQMLSEAAAHMHDSNFIA 596 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLL 591 + +L L + + ++ + D + Y+ L + ++ ++ Sbjct: 597 ERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAIV 655 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + + + + EK L+ +E+ Sbjct: 656 TEELKHMLYALQDPALAHDNEKCDSLMKRFNELK 689 >gi|293368698|ref|ZP_06615304.1| DNA primase [Bacteroides ovatus SD CMC 3f] gi|292636239|gb|EFF54725.1| DNA primase [Bacteroides ovatus SD CMC 3f] Length = 706 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 160/694 (23%), Positives = 291/694 (41%), Gaps = 91/694 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 16 IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 71 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S + + QKG+ Sbjct: 131 NNFARDYFQNILKNHIDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDAFAKEAIQKGY 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 357 GDDPDSFARKHNSTEFQAFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416 Query: 416 KDQKLRYYYSQAIRDRL--------------QQLFQKYITEHSGYGRYWKKNARHRDQKG 461 + +R Y + L ++ + E + R + Q Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTATMSQGT 476 Query: 462 PSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTLI 492 PS+ + +GK ++ E +L ++ Sbjct: 477 PSENAPMPNGDIPLPPEIDNGYTEVPPSLQEDNYASFIPQEGKEGQEFYKFERLILQAVV 536 Query: 493 NHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + +++ +L ++ + N +++ S + + + Sbjct: 537 RYGEKIMCNLTDEEGNEIPVTVIEYVINDLKEDELAFHNPLHRQMLSEAAAHMHDSNFIA 596 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRLL 591 + +L L + + ++ + D + Y+ L + ++ ++ Sbjct: 597 ERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAIV 655 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + + + + EK L+ +E+ Sbjct: 656 TEELKHMLYALQDPALAHDNEKCDSLMKRFNELK 689 >gi|33240207|ref|NP_875149.1| DNA primase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237734|gb|AAP99801.1| DNA primase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 686 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 160/664 (24%), Positives = 287/664 (43%), Gaps = 58/664 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + I +++G++V ++ ++ CPFHD+ PS + +K F Sbjct: 5 RLHPRTLDAVKEKADIVDVVGEHVVLKKKGK-----EFVGICPFHDDNRPSMTVSPAKQF 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDL 117 Y+CFSC G+ + FL L SF E V LA +P+ +D +++ + + L Sbjct: 60 YFCFSCGAGGNSIKFLMELQRQSFGEVVLELARKYQLPVETLDGPQQERFRQELSRKDRL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +R++ +A +F L+++ YL + R ++ I+ F+LGYAP S L ++ Sbjct: 120 LRVLSLAKSWFQDQLRSSVGVEALNYLMKTRQLNKGTIDSFELGYAPQSWDGLITYMNHV 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + S E ++EAGL++ + YDRFRNRLI PI +G+VI FGGR+L + KYLN Sbjct: 180 ESISSELLVEAGLVVPRKSENGFYDRFRNRLIVPINDRQGRVIGFGGRSLDGSDP-KYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK+L+ A N ++K + I+VEGY DV++L AG+ N V Sbjct: 239 SPETELFEKGKHLFGLDKAANAIRK----------ADKAIVVEGYFDVIALHSAGINNSV 288 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 ++LGTAL+ Q++ L + S RI+L FD D G+RAA +AI ++ + + + Sbjct: 289 AALGTALSSQQIKQLCRCSDSKRIILNFDTDSAGIRAANRAIGEVEHLAMQGQLELRILQ 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L +DPD +++ + ++ L S +D + ++ + D L + Sbjct: 349 LPSSKDPDEYLQDHSDLDYKVLADNSPLWLDWQIDQILKDSDLSKADHFQRAVSGLVQLL 408 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + LR +Y Q + + L + + R K R S Sbjct: 409 GKLPQSALRSHYLQKVAELLSGGQARLALQLEEDLRNQIKGQRWHG--------RSSRFA 460 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVEQ 529 + EA +L ++ P EL + + + LW + + Sbjct: 461 LPSETSLRERLEAQILRLYLHFPNHRACIRNELRQRELEDFALHHHRLLWIAISELEEKH 520 Query: 530 ----------------KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 + E+ + L ++ + L + A I + Sbjct: 521 IGATLLESISRGESNSQQLSEIELSKILLDKLVADNDDSLSSTLTRLLEPDEFQLALIKE 580 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIE----KQIAQVTA--KGEAEKTAILISILHEVHIQ 627 + LA+ +R + L R + IE +++ + E+ + +++ ++ Sbjct: 581 PLLELRGTLAVLERQKALKRCRHLIEAWSGQRLETLETCISALIEQEQKHPNEKYDMELR 640 Query: 628 IHQI 631 I ++ Sbjct: 641 IDKM 644 >gi|296453705|ref|YP_003660848.1| DNA primase [Bifidobacterium longum subsp. longum JDM301] gi|296183136|gb|ADH00018.1| DNA primase [Bifidobacterium longum subsp. longum JDM301] Length = 699 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 142/710 (20%), Positives = 253/710 (35%), Gaps = 100/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IRKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGTEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPASRKALERRDVVEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIEHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTE-------------------------ANIVDVRQGYQQALAL 584 L Q+ ++ L + Q Y L Sbjct: 586 LNQVINELAVMPLPLPGDDGGNGAQPPQSNVPGGVGGGAAAVQLRPATPEEQRYATELLT 645 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 RLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692 >gi|256827226|ref|YP_003151185.1| DNA primase, catalytic core [Cryptobacterium curtum DSM 15641] gi|256583369|gb|ACU94503.1| DNA primase, catalytic core [Cryptobacterium curtum DSM 15641] Length = 642 Score = 323 bits (828), Expect = 5e-86, Method: Composition-based stats. Identities = 163/627 (25%), Positives = 261/627 (41%), Gaps = 46/627 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +L + V +R D+W CCPFHDEK+PS + + + Sbjct: 7 ISDEDIQKVRAATDLVSLFSERVPLRQRGR-----DFWCCCPFHDEKSPSCKIDPATQQF 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF CH GD SF+ F ++V+RLA A + L + + L + + Sbjct: 62 YCFGCHEHGDVFSFVMKTEDIDFPDAVRRLADRAHIELHESGGRGGVSRSYKERLRGVCQ 121 Query: 123 VATDFFHHS---LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 DF+H LK+ YL RG+ + LG+AP L HLR +G++ Sbjct: 122 ETRDFYHQQLMRLKSPEADAARSYLASRGLGGQVPAHWHLGFAP-GHGVLMRHLRSRGYT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++++A +++ DN+ T DRF NR++FPI +G+ IAFGGR + GE KYLNS +T Sbjct: 181 VKEMVDANVVVSRDNA-TPRDRFFNRIMFPIHDEQGECIAFGGRVVGSGEP-KYLNSQDT 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHK L+ A + +S I+VEGY DV++L +AGV+NVV++LG Sbjct: 239 PLFHKSNILFGLDAAKAAM----------TASGQAIVVEGYTDVIALSEAGVKNVVATLG 288 Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353 TALT +R L R++ FDGD+ G RA +A+ + + L Sbjct: 289 TALTTQHIRSLSRHAGQRVIYLFDGDEAGQRATDRALGFIDESMTPEAGKVRIDLLACTL 348 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP F+ YG + ++ PL+ R +TP+ R + Sbjct: 349 PDGLDPADFVDKYGADELRAELKQAKPLIAFGIDRHLAQFDLSTPEGRTAAFADALALLA 408 Query: 414 HIKDQKLRYYYSQAIR-----------DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 IKD L Y+ I +RL +L + + + Q Sbjct: 409 PIKDSLLAQDYAVQIAGRLHFREDDALERLSRLQPPRRAQVASSSSSSRNADHQDRQVAL 468 Query: 463 SQRLMQSSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 S + +S VK + EAAL+ +HP + LA + + Sbjct: 469 SSQPQTTSSVKPAALPQSERTRRRFEAALIRVCAHHPHLTLTHADALAQTNWHEALHAQA 528 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS----ATTEANIVDV 574 L + P E + +R + + R + + + E ++ D+ Sbjct: 529 ADALLDCVAKNPTASPAEAAAAITQRAPDATVLLVSRSPDPSDIAAFAAYLVEELSLGDL 588 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQ 601 + R L Q+ E+ Q Sbjct: 589 SDTIDAYRSQLARPDGLDSQERELLFQ 615 >gi|313140615|ref|ZP_07802808.1| DNA primase [Bifidobacterium bifidum NCIMB 41171] gi|313133125|gb|EFR50742.1| DNA primase [Bifidobacterium bifidum NCIMB 41171] Length = 696 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 139/707 (19%), Positives = 243/707 (34%), Gaps = 94/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKTPSF + G + Sbjct: 2 ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C + GD ++ F E+V+ LA + L + + E + LI Sbjct: 58 HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF + + L R E F GYAP +L +L KGF++ Sbjct: 118 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++++AGL G YD FR R +PIR S G+ + FG R L + + KY+N+P+ Sbjct: 178 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ V++ Sbjct: 236 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 285 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 286 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 345 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI + PL D + Sbjct: 346 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 402 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446 + + I I+D+ R Y++ R+ E Sbjct: 403 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 462 Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486 R P + R E Sbjct: 463 AYSPRRRFGAGNGEGAGQPRVEPGSDPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 522 Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + TLI P + + L + + + L+ + + P+ + + Sbjct: 523 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 582 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600 G L + ++ L ++ + G A+ L +R E+ Sbjct: 583 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 642 Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634 ++ + G E + L+ + ++ +++Q Sbjct: 643 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 689 >gi|224283462|ref|ZP_03646784.1| DNA primase [Bifidobacterium bifidum NCIMB 41171] Length = 699 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 139/707 (19%), Positives = 243/707 (34%), Gaps = 94/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKTPSF + G + Sbjct: 5 ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C + GD ++ F E+V+ LA + L + + E + LI Sbjct: 61 HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF + + L R E F GYAP +L +L KGF++ Sbjct: 121 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++++AGL G YD FR R +PIR S G+ + FG R L + + KY+N+P+ Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ V++ Sbjct: 239 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 289 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI + PL D + Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446 + + I I+D+ R Y++ R+ E Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 465 Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486 R P + R E Sbjct: 466 AYSPRRRFGAGNGEGAGQPRVEPGSDPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 525 Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + TLI P + + L + + + L+ + + P+ + + Sbjct: 526 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600 G L + ++ L ++ + G A+ L +R E+ Sbjct: 586 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 645 Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634 ++ + G E + L+ + ++ +++Q Sbjct: 646 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 692 >gi|19745865|ref|NP_607001.1| DNA primase [Streptococcus pyogenes MGAS8232] gi|19748015|gb|AAL97500.1| putative DNA primase [Streptococcus pyogenes MGAS8232] Length = 604 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 158/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ G V V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELL-----KGFVVEIVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|113474578|ref|YP_720639.1| DNA primase [Trichodesmium erythraeum IMS101] gi|110165626|gb|ABG50166.1| DNA primase [Trichodesmium erythraeum IMS101] Length = 675 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 163/689 (23%), Positives = 289/689 (41%), Gaps = 77/689 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +D I ++ I ++I +++ +R DY CPFH+EKTPSF + +K Sbjct: 5 RFHQDTITEVKQRADIYDVISEHLLLKKRGK-----DYVGLCPFHEEKTPSFTVSTTKQL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCF C G+ L FL + SF + V LA +P+ P+ ++ + + L Sbjct: 60 YYCFGCGAAGNVLKFLMEIGKSSFSDVVLDLARRYQIPIKTELPENRQEFQRQISLREKL 119 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQ 175 ++ +A F+ H+L+ + K Y R I+ F+LGYAP+ ++ + + Q Sbjct: 120 YEILAIANSFYQHALRQPQGKIALEYLQISRQTSEETIQNFQLGYAPNGWETIYGYLVEQ 179 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 KG E + + GL++ + YDRFR+RL+ PI +G+VI FGGRTL E KYLN Sbjct: 180 KGLPVELVEKTGLILSRKSGTGYYDRFRDRLMIPINDIQGRVIGFGGRTL-SDEQPKYLN 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LF KGK L+ A + K + ++VEGY D ++L +G+ NVV Sbjct: 239 SPETELFDKGKTLFALDKAKTAISKQDKA----------VVVEGYFDAIALHASGINNVV 288 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVL 352 +SLGTAL+ Q+R L + + +I+L FD D G++A +AI ++ ++ + Sbjct: 289 ASLGTALSSIQIRQLLRYTESKQIILNFDADRAGIQATERAIGEMEKFAYSGEVQLRILN 348 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + G+D D +++ Y +++L+V S +D + ++ + DE + + + Sbjct: 349 IPDGKDADEYLKTYSGKKYQELLVNSTLWIDWQIQNIVRTKNLSLADEYTKASQEIVKIL 408 Query: 413 NHIKDQKLRYYYSQAIRDRL-----------------------------QQLFQKYITEH 443 I + YY Q L + + Sbjct: 409 TKITNDNQFTYYLQYCAQILSQEDTRRVSLIYENLLTQVFINWKKILAKGEFISPPLLVA 468 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + N K + S VKG L + ++ P +E Sbjct: 469 KQLKSNQRNNRNFTKGKKNHSPEVLSPPVKGSLLAEAESLLL---RIYLHCPNYRREVKD 525 Query: 504 ELA--DIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + D+++ + LW + S E + +++ +L + + LD+ Sbjct: 526 AMEARDLQFSFAHNRLLWQQIVSAENISENEINQSDDLISKLQDTYWEN----LDKFPNL 581 Query: 560 AGLWSATTEANIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 L+ + +R + + + KR L +E + + A+ Sbjct: 582 KHLFHLDEKTKKNILRAPLEIRSSVATIELIISKKRQSTLLNMWQETDLSVDPELAEKYK 641 Query: 612 EKTAILISILHEVHI-QIHQIESQEAMIE 639 EK + E+ ++ I+ +IE Sbjct: 642 EKFYSESQWIQELERLRLTTIQD---LIE 667 >gi|310287814|ref|YP_003939072.1| DNA primase [Bifidobacterium bifidum S17] gi|311064698|ref|YP_003971423.1| DNA primase [Bifidobacterium bifidum PRL2010] gi|309251750|gb|ADO53498.1| DNA primase [Bifidobacterium bifidum S17] gi|310867017|gb|ADP36386.1| DnaG DNA primase [Bifidobacterium bifidum PRL2010] Length = 699 Score = 323 bits (827), Expect = 6e-86, Method: Composition-based stats. Identities = 139/707 (19%), Positives = 244/707 (34%), Gaps = 94/707 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKTPSF + G + Sbjct: 5 ILKEDVEKVRAAADLYDIVSASVTLRPSG----TGTFVGLCPFHDEKTPSFSVRPALGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C + GD ++ F E+V+ LA + L + + E + LI Sbjct: 61 HCFGCGLGGDVFGYVEHQENIDFREAVELLADKYHIELHYENSGGRTEHSGSKRARLIEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A FF + + L R E F GYAP +L +L KGF++ Sbjct: 121 NEEAQRFFMSQIMSKEALAARKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQ 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 +++++AGL G YD FR R +PIR S G+ + FG R L + + KY+N+P+ Sbjct: 181 QEMLDAGLARQGQR--GVYDYFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPD 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T L+ K + LY A + + K +++VEGY DV+++ AG+ V++ Sbjct: 239 TQLYRKTQVLYGIDLAKSSIVKK----------RQVVIVEGYTDVMAMHLAGIDTAVATC 288 Query: 299 GTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKAID 336 GTA +++ +L RIV FDGD G +AA A Sbjct: 289 GTAFGAEHAKIVRRLVADDSLGAVQLVGPLNVPGQALSSRIVFTFDGDAAGQKAALHAFG 348 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 L L ++ + DP G A LI + PL D + Sbjct: 349 LDSAFL---SQTFVAVADDNLDPCDLRINRGDQAVRSLIEHAKPLYDFVIDAAIGRFDTT 405 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY---------- 446 + + I I+D+ R Y++ R+ E Sbjct: 406 YATGQMGAVKAVAPLIAQIRDRSQRDLYARKATRRIGVDLDIMQREVRSAHGQLHVRDED 465 Query: 447 ---GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-----------------EAA 486 R P + + R E Sbjct: 466 AYSPRRRFGAGNGEGAGQPRVEPGSNPYANPAERRALEHRAATEQSYFRIDDAVFICEQQ 525 Query: 487 LLLTLINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + TLI P + + L + + + L+ + + P+ + + Sbjct: 526 FMATLIQIPRAINRTMFASLNEDSFVAPVFRALFLAIQAAGGLPPDDAPQGLWMHNLNKA 585 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-----QQALALYKRFRLLSRQKEEIEK 600 G L + ++ L ++ + G A+ L +R E+ Sbjct: 586 GGLTLTTVINELAVLQLPLPPSDQDRAVAGSGVPGAANAAAVQLRPASPAETRYAAELLA 645 Query: 601 QIAQV-----------TAKGEAE--KTAILISILHEVHIQIHQIESQ 634 ++ + G E + L+ + ++ +++Q Sbjct: 646 RLLDMGYMRRIAAARRRMAGMPEGSEKLELLGEITKLETSRKDLQAQ 692 >gi|188995615|ref|YP_001929867.1| DNA primase [Porphyromonas gingivalis ATCC 33277] gi|188595295|dbj|BAG34270.1| DNA primase [Porphyromonas gingivalis ATCC 33277] Length = 673 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 163/684 (23%), Positives = 287/684 (41%), Gaps = 72/684 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + +L I ++ +V +R N Y CPFH ++ PSF + +K Sbjct: 2 IDDLTRERILDAANIVEVVSDFVSLRKRGVN-----YLGLCPFHSDRNPSFSVSPAKNLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ + S+ E+++ LA G+ + + E+K + + L Sbjct: 57 KCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIEIHERELTDEEKRLKSDRESMFIL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A DFF ++L N + + Y +RGI ++ F+LGY P+ R + + +KGF Sbjct: 117 NEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYDPEKRSAFSDEAIRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 E +++ GL I ++S DRFR R+IFP+++ G+++AFGGR L K ++ KY+NSP Sbjct: 177 KPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+I++ K K LY F A + + LVEGY DV+S+ Q+G++NVV+S Sbjct: 237 ESIIYSKSKELYGLFLAKKEIAR----------RDKCFLVEGYTDVISMHQSGIENVVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+ + + + I + +DGD G++AA + I+L L G V VLL GE Sbjct: 287 SGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINL---LLEQGMHVKVVLLPDGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + T FE+ I + + + P RA+L + I I D Sbjct: 344 DPDSFARNHTITEFEEYIKQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS---------------------GYGRYWKKNARH 456 R Y Q L + E G R + Sbjct: 404 DITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPPPPTQQPANGSERKNDSDNLV 463 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA---ILQEQYQ---------- 503 + ++ + + P+ E LL +I + ++ + Sbjct: 464 GTENHSAETPTDNRSAEVGQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEV 523 Query: 504 ----------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + +++ + + + + ++ L Sbjct: 524 ALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELL 583 Query: 554 -DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 +R + E+N + Q + L + + Q ++K+IAQ G+ E Sbjct: 584 TNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIE 643 Query: 613 KTAILISILHEVHIQIHQIESQEA 636 +++ L +++++S+ A Sbjct: 644 LQLEIMNELRS----MNEMKSELA 663 >gi|126663219|ref|ZP_01734217.1| DNA primase [Flavobacteria bacterium BAL38] gi|126624877|gb|EAZ95567.1| DNA primase [Flavobacteria bacterium BAL38] Length = 658 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 151/659 (22%), Positives = 274/659 (41%), Gaps = 60/659 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + + +IG +V R +N PF +EK+PSF + K + Sbjct: 2 ISKDTIEKVFETARVEEVIGDFVQLKRAGSNL-----KGLSPFVNEKSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + + + + + Sbjct: 57 KDFSSGKGGNAVTFLMEHEHFTYPEAIKYLAVKYNIEIEETIQTDEDVAQANEKESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +FHH+L + + Y ERG S I+ F LGY+P++ + + KG+ Sbjct: 117 SEFAQKYFHHTLLETEEGKAIGLSYFKERGFTSDTIKKFGLGYSPETWDAFTKEALGKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + E + + GL I +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 NLEYLDKTGLSIV--KEDKQFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ + Q+G++NVV+S Sbjct: 235 ESDIYHKSKVLYGIFHAKQAIAKL----------NNCFLVEGYTDVIQMNQSGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+P I + FDGD GLRA+ + IDL L G V G+ Sbjct: 285 SGTALTPDQIRLINRLTPNITVLFDGDAAGLRASIRGIDL---ILEAGMNVKVCTFPDGD 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R E+ + N P ++A+L + I+ I D Sbjct: 342 DPDSFARKTSYEDLLLYFEENAKDFIQFKASLLMLEAKNDPIKKADLIRDMVVSISKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGK 475 + R Y + + + + + N ++++++ + + Sbjct: 402 RIKREVYIKECSRIMDISEDVLFNTLAQLVKKDLSEANKQYKEEQKAFEVVKNDISQPAS 461 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQEL------------------------------ 505 E ++ L+ + E + Sbjct: 462 KVDIQYELEHKIIQILLLYGNKEAEFEDTILSENEDKEFVEVTEKIKYKVYQRVYLSLQE 521 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 ++ N + +++ L + F E + F ++ L E E+ L + R+ Sbjct: 522 DEVELANPVFKAIYNHLIAYFNENEVFELDKYLMHLPEELAQEVTTVLMDEEREVLHNWE 581 Query: 566 TTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + + + Q + + R+ L++ +E++ ++ E ++++ L Sbjct: 582 VQQIYVKQKEETISQYVTETIITLRWYLVNNIIDELKNNLSTEEELDNRESLEMVMAYL 640 >gi|291517239|emb|CBK70855.1| DNA primase, catalytic core [Bifidobacterium longum subsp. longum F8] Length = 699 Score = 322 bits (826), Expect = 7e-86, Method: Composition-based stats. Identities = 142/713 (19%), Positives = 253/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L + Q Y Sbjct: 583 LNQVINELAVMPLPLPGDDTGSGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692 >gi|227546321|ref|ZP_03976370.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213302|gb|EEI81174.1| DNA primase [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 702 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 140/713 (19%), Positives = 252/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAMRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 + R + P + + K+ + E + Sbjct: 466 EDAYAPKHRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L ++ Q Y Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 695 >gi|312133173|ref|YP_004000512.1| dnag [Bifidobacterium longum subsp. longum BBMN68] gi|311772370|gb|ADQ01858.1| DnaG [Bifidobacterium longum subsp. longum BBMN68] Length = 702 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 140/713 (19%), Positives = 252/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 +CF C + GD ++ F E+V+ LA + L + + +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPARENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y + R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L ++ Q Y Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 695 >gi|322690657|ref|YP_004220227.1| DNA primase [Bifidobacterium longum subsp. longum JCM 1217] gi|320455513|dbj|BAJ66135.1| DNA primase [Bifidobacterium longum subsp. longum JCM 1217] Length = 699 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 142/713 (19%), Positives = 253/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y + R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYVRKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L ++ Q Y Sbjct: 583 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 692 >gi|291456248|ref|ZP_06595638.1| DNA primase [Bifidobacterium breve DSM 20213] gi|291381525|gb|EFE89043.1| DNA primase [Bifidobacterium breve DSM 20213] Length = 700 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 143/711 (20%), Positives = 254/711 (35%), Gaps = 101/711 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPNRENNGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I +AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEIFDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKIKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADNNLDPCDLRIERGNEAVRSLIANAKPLYDFVIDAAIGRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKAAGRIGVDLEVMRREVMAARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + T Sbjct: 466 EDAYAPKRRFDREERRVEPGTNPYANPAARKTLERRDAAEQAYFKIDDAVFIAEQQFMAT 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQVIAAAGGLPSDNTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTEA--------------------------NIVDVRQGYQQALA 583 L Q+ ++ L ++ Q Y L Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQPNAPGDAGAPGAAAMQLRPATAEEQRYATELL 645 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 TRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 693 >gi|255535604|ref|YP_003095975.1| DNA primase [Flavobacteriaceae bacterium 3519-10] gi|255341800|gb|ACU07913.1| DNA primase [Flavobacteriaceae bacterium 3519-10] Length = 640 Score = 322 bits (826), Expect = 8e-86, Method: Composition-based stats. Identities = 153/656 (23%), Positives = 288/656 (43%), Gaps = 45/656 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + I + +IG+YV R +N + PFHDEKTPSF + SK + Sbjct: 2 ISKATIDKIFSTIRVEEIIGEYVQLKRAGSN-----FKGLSPFHDEKTPSFVVSPSKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDLI 118 FS G +SFL + ++ E+++ A G+ + + ++ + + L Sbjct: 57 KDFSSGKGGTAISFLMEIESFTYPEALRHAAKKYGIEIEEDKRELTVEEKQSQTDKEVLY 116 Query: 119 RLIEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ E+A FF L+ + + + Y ER + I F+LGYAP+ + + KG Sbjct: 117 KIHEIANSFFQEQLETEEGRAIGYSYFKERDLRDDIISKFQLGYAPEQKDAFTSFAIDKG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNS 236 +S+E + ++GL I +N+ DRFR R+IFPI S G+V+ FGGR L ++ KYLNS Sbjct: 177 YSKEILEKSGLSIYPENAPNGIDRFRERVIFPIHSFSGRVLGFGGRILRNNVKTAKYLNS 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET ++HK + LY + + K ++ +LVEGYMDV++L QAG+++VVS Sbjct: 237 PETEIYHKSQVLYGLNQSKQAISK----------NNLCLLVEGYMDVIALHQAGIEHVVS 286 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALT Q++L+ +L+ + + FDGD G++A++++ID++L + +L G Sbjct: 287 SSGTALTVEQIKLIKRLTENVTILFDGDAAGIKASFRSIDMLLSES---MNIRILLFPDG 343 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF R + + E+ I + P ++AE + + ++ Sbjct: 344 DDPDSFARKHPQDFVERFISTEAKDFIEFKAEVLLKEAGGDPAKKAEAIRDIVKSVAFVQ 403 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + Y + + + Q E + + K+ + +K + + + Sbjct: 404 NALKQEVYLKEVSTKFGLSEQSLFNELNVQQQMRKQQVSPQTRKEQETPQKLQVVPENTV 463 Query: 477 SKKPSL-REAALLLTLINHPA----------------ILQEQYQELADI--RYDNNELQK 517 + P L E L+ ++ + +++E L + + K Sbjct: 464 TIDPLLVLEEKLVELMLKYGDRVVDRVDEENNGYQITVIEEIIGHLEEDQCEIQSPLNLK 523 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQ 576 + + E + L E G++ ++ ++ +V Sbjct: 524 IIGEIKQGIDENELRAGNFFMTLLDENISGKVADAFVEPYETSDWGKHQIFFSSEEEVVP 583 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIHQI 631 Q + + + + +++ + E K I ++ L E+ ++ +I Sbjct: 584 KLVQDVIFRHKREYIMKIIRDLKLALTDSENNDETYKKIITLTHLRKELDEKLFRI 639 >gi|239622327|ref|ZP_04665358.1| DNA primase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514324|gb|EEQ54191.1| DNA primase [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 699 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 142/713 (19%), Positives = 254/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 2 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 58 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPAHENTGSKRTRLL 117 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 118 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 178 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 236 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 285 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 286 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 346 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 402 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 403 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVDLEVMRREVMNARRQMHVRD 462 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 463 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 522 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 523 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 582 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L ++ Q Y Sbjct: 583 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 642 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 643 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQITRMETARKDLQAQ 692 >gi|94994082|ref|YP_602180.1| DNA primase [Streptococcus pyogenes MGAS10750] gi|94547590|gb|ABF37636.1| DNA primase [Streptococcus pyogenes MGAS10750] Length = 626 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 33 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 87 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 88 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 147 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 148 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 206 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 207 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 266 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 267 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 316 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 317 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 371 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 372 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 431 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 432 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 489 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 490 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 541 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 542 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 589 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 590 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 626 >gi|88658374|ref|YP_507559.1| DNA primase [Ehrlichia chaffeensis str. Arkansas] gi|88599831|gb|ABD45300.1| DNA primase [Ehrlichia chaffeensis str. Arkansas] Length = 588 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 156/634 (24%), Positives = 278/634 (43%), Gaps = 58/634 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + I + I +S+++GQ V +R + CPFH EKTPSF ND KG YYCF Sbjct: 2 NVIDIIKSKIKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVNDEKGLYYCF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD + F S + F ++ LA I G+ LP +T + +++ AT Sbjct: 57 GCGANGDVIQFTSDINALDFKGAINYLAEIYGIDLPQST-------NNKTSITPILDAAT 109 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F L+N Y+ R I + ++ F++GYAP L ++L GF+ + I Sbjct: 110 LWFEEQLRNNH--VAIEYIRSRKISNDTVKKFRMGYAPTY--GLGKYLLSLGFNIDDIKN 165 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 GLL + D F NR+IFPI +S G +I FGGR++ ++ KYLNS + F K Sbjct: 166 TGLLNSQNQ-----DYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKR 220 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +NLY A+ +K + II+VEGYMDVL L Q G+ NVV LGT++T Sbjct: 221 ENLYASHFAVREAKKQGK----------IIVVEGYMDVLMLHQMGISNVVGLLGTSMTSE 270 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 + LW+++ I++ DGD G A+ K+ L L + PG + FV + G+DP Sbjct: 271 HVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFTGKDPYDICIN 330 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKDQKLR 421 G + L+ + L + +W E + N P++ LE +K+ ++ I D + Sbjct: 331 DGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVV 390 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 YY + +++ L +Y K ++ P ++ Sbjct: 391 KYYKKYFYSQIRNL------------QYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEE 438 Query: 482 LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEI 537 + ++ ++ P +L + + + + + + L + + + E + Sbjct: 439 YNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQNIINIKVTLCNHVISKEVL 498 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + E++ + +++ + VDV + + + L + + ++ + Sbjct: 499 LSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILD 558 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + KG+ + L + E+ ++ ++ Sbjct: 559 LR-------LKGQRDLAERLSNQAQEIDNRLREL 585 >gi|86140639|ref|ZP_01059198.1| putative DNA primase [Leeuwenhoekiella blandensis MED217] gi|85832581|gb|EAQ51030.1| putative DNA primase [Leeuwenhoekiella blandensis MED217] Length = 660 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 165/672 (24%), Positives = 277/672 (41%), Gaps = 62/672 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V + +N + PF DE+TPSF + K + Sbjct: 2 ISKTTIDAVFETARVEEVIGDFVQLKKSGSN-----FKGLSPFSDERTPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + E+KE+ + + + Sbjct: 57 KDFSSGKGGNAVAFLMEHEHFTYPEAIKYLAKKYNIEVEETEQTDEQKEQANERESMYVV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+FH +L N+ + Y ERG IE F+LGY+PD + +KG+ Sbjct: 117 SEFAKDYFHKTLINSEQGKAIGLSYFKERGFTEETIEKFQLGYSPDVWDAFTSEAIRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 E + + GL I +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 177 KLEFLEKTGLTIV--KEEKQFDRFKGRVMFPIHSLSGRVLGFGGRILTNEKKAAKYLNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K LVEGY DV+ L Q G++NVVSS Sbjct: 235 ESEIYHKSKVLYGIYYAKQAIAK----------EDNCYLVEGYTDVIQLHQLGIENVVSS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+P I + FDGD G RA+ + IDL L G V GE Sbjct: 285 SGTALTPEQIRLINRLTPNITVLFDGDAAGQRASLRGIDL---ILEQGMNVKVCSFPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + T E + E+ + P ++A L + I I D Sbjct: 342 DPDSFSKAHTLTEVEDFLKENAKDFIQYKASLLVKEAQGDPIKKAGLVRDMVESIAKIPD 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS--QRLMQSSLVKGK 475 R Y Q + + KK +K PS + + + K K Sbjct: 402 VIKREIYVQECARIMDIKEDVLFNTLAQIRNKGKKEVAKPAEKRPSGGEMVPLKNEEKIK 461 Query: 476 LSKKPSLREAALLLTLI-------NHPAILQEQYQEL----------------------- 505 ++ L E ++ LI ++ ++ +E Sbjct: 462 FERQYEL-EQNIIKLLITFAKEPVEFVDLVYDEDEEGKLIEREEKRELIIYEKIYLDLQE 520 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL----DRQVRDAG 561 ++ + N++ +K++ L +++ + + L E E + + ++ A Sbjct: 521 DEVEFANDDFKKIYPLLIEHLTQEEGEIKLDKLGELLEAAQMEKISSIAFEPEKHELHAW 580 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + D L R L+ R+ E +Q+ A++ Sbjct: 581 DRHEIYVKTLKDNAGLETVQTLLNLRHFLIQRKMAEFGEQLKTGELPENAQEFMEDFKDY 640 Query: 622 HEVHIQIHQIES 633 + + I + + Sbjct: 641 KTLEVLIAKKRN 652 >gi|94990163|ref|YP_598263.1| DNA primase [Streptococcus pyogenes MGAS10270] gi|94543671|gb|ABF33719.1| DNA primase [Streptococcus pyogenes MGAS10270] Length = 604 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 157/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + N + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVNNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQHG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|254415548|ref|ZP_05029308.1| DNA primase catalytic core, N-terminal domain family [Microcoleus chthonoplastes PCC 7420] gi|196177729|gb|EDX72733.1| DNA primase catalytic core, N-terminal domain family [Microcoleus chthonoplastes PCC 7420] Length = 655 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 157/657 (23%), Positives = 274/657 (41%), Gaps = 48/657 (7%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I + + I +++ + V +R DY CPFH EKTPSF + Sbjct: 1 MQIPRLHPDTIAQVKERVDIVDIVSEQVVLRKRGK-----DYVGLCPFHGEKTPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 +K YYCF C G + FL SF E V LA + + ++P+ ++ + Sbjct: 56 NKQMYYCFGCGTGGTAIKFLMEAGKQSFSEVVLDLARRYQIRVKTLEPEQRQELQRQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYSLREH 172 Q L ++ +A F+ H+L+ + ++ YL + ++ F++GYAP + +L + Sbjct: 116 QEQLYEILALAASFYQHALRQPQGQQALEYLQSQRHLGEETLQQFQVGYAPATWETLYRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + QKG + + +AGL++ + YDRFR+R++ PI +G+VI FGGR L E Sbjct: 176 LVEQKGKPVQLVKDAGLILPRKSGDGYYDRFRDRIMIPIHDRQGRVIGFGGRAL-GDELP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF+KGK LY A N + ++VEGY D ++L + G+ Sbjct: 235 KYLNSPETPLFNKGKTLYALDKAYNAIA----------DQDQAVVVEGYFDAIALHRVGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 NVV+SLGTAL+ Q+RLL + + +I+L FD D G AA +AI ++ ++ Sbjct: 285 HNVVASLGTALSLDQMRLLLRYTESNQIILNFDADKAGTIAAERAIGEIADLAYKGQVQL 344 Query: 349 NFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + L G+D D F+ G +++L+ + + + + + ++ Sbjct: 345 RILNLPDGKDADEFLTHTPDGAEQYQQLLQNAPLWLHWQIDQLIIGKDLKQAPQFKQVAQ 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + + ++D + YY ++L + I + R K + Sbjct: 405 KIVKLLYKLEDVNQQSYYINYCAEKLSLGESQMIPRLVQALQTQLNTLRITPIKKDDKSN 464 Query: 467 MQSSLVK-------GKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQK 517 ++ + + EA LL ++ P Q L D+ + + + Sbjct: 465 LKQQNLPISIDLSISQEHSLLEEAEALLLRIYLHRPEYRQTIIDILDAKDLLFSLSPHRF 524 Query: 518 LWSFLFSDFVEQKYFL---PEEIHQRLCERGFG-----ELLKQLDRQVRDAGLWSATTEA 569 LW + + L PE++ L +R L++ L T Sbjct: 525 LWQQILDVQSVAQSILLQHPEKLISLLQDRSIQFPEEMVLVEHLFHLNEKRSQDLTRTPL 584 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 I + + K R Q +++ + ++ L E+ Sbjct: 585 AIRTAAACL-EVVTWNKHKRYCIEQWQKLNFATDPKLKEYYSQGIREAYKRLQELQK 640 >gi|34541434|ref|NP_905913.1| DNA primase [Porphyromonas gingivalis W83] gi|34397751|gb|AAQ66812.1| DNA primase [Porphyromonas gingivalis W83] Length = 673 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 160/684 (23%), Positives = 284/684 (41%), Gaps = 72/684 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + +L I ++ +V +R N Y CPFH ++ PSF + +K Sbjct: 2 IDDLTRERILDAANIVEVVSDFVSLRKRGVN-----YLGLCPFHSDRNPSFSVSPAKNLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G + F+ + S+ E+++ LA G+ + + E+K + + + L Sbjct: 57 KCFACGEGGSPVHFIMKIEQLSYSEALRYLARKYGIKIHERELTDEEKKLKSDRESMFIL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A DFF ++L N + + Y +RGI ++ F+LGYAP+ R + + +KGF Sbjct: 117 NEFANDFFKNNLLNTIEGQTIGMTYFRQRGIRPETVQKFQLGYAPEKRSAFSDEAIRKGF 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 E +++ GL I ++S DRFR R+IFP+++ G+++AFGGR L K ++ KY+NSP Sbjct: 177 KPEYLVDTGLSIRYEDSKALDDRFRGRVIFPVQTVSGKIVAFGGRILGKKDKAAKYVNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+I++ K K LY F A + + LVEGY DV+S+ Q+G++NVV+S Sbjct: 237 ESIIYSKSKELYGLFLAKKEIAR----------RDKCFLVEGYTDVISMHQSGIENVVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+ + + + I + +DGD G++AA + I+L L G V LL GE Sbjct: 287 SGTALTQQQINQIHRFTSNITVLYDGDAAGIKAALRGINL---LLEQGMHVKVALLPDGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + FE+ I + + + P RA+L + I I D Sbjct: 344 DPDSFARNHTVAEFEEYIEQHETDFIRFKTQLYLSDMERDPIRRAQLITDIIGSIALIPD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------ 465 R Y Q L + E + + Sbjct: 404 DITRRVYVQETGQTLSMDERLLAREVQKMRFRRSTYSSPQPATQQPANGSERKNDSDNLV 463 Query: 466 ---------LMQSSLVKGKLSKKPSLREAALLLTLINHPA---ILQEQYQ---------- 503 + + + P+ E LL +I + ++ + Sbjct: 464 GAENHSAETPTDNRSAEVEQPYYPAKYEEELLRLIIRYGERKLLIYRHEEGAEKQTPSEV 523 Query: 504 ----------ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + +++ + + + + ++ L Sbjct: 524 ALAYYIKSDLNADGVDIGTDVFRQILDEAAEQSFDSGFVAAKYFRDHPNAQISHIAVELL 583 Query: 554 -DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 +R + E+N + Q + L + + Q ++K+IAQ G+ E Sbjct: 584 TNRYALSRIHYGKGDESNAEEDLQMRVERELLTIKNVFIQVQIRALQKEIAQAQKAGDIE 643 Query: 613 KTAILISILHEVHIQIHQIESQEA 636 +++ L +++++S+ A Sbjct: 644 LQLEIMNELRS----MNEMKSELA 663 >gi|160900476|ref|YP_001566058.1| DNA primase [Delftia acidovorans SPH-1] gi|160366060|gb|ABX37673.1| DNA primase [Delftia acidovorans SPH-1] Length = 677 Score = 322 bits (825), Expect = 1e-85, Method: Composition-based stats. Identities = 155/486 (31%), Positives = 234/486 (48%), Gaps = 26/486 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK F Sbjct: 11 SIPQSFIQELLSRVDVVDIVGRYVQLRKGGAN-----FMGLCPFHSEKSPSFTVSPSKQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQT 115 Y+CF C G+ + FL G F+E+VQ LA+ G+ +P D ++E + Q Sbjct: 66 YHCFGCGKNGNAIGFLMDHAGMGFVEAVQDLASQVGLQVPQDDISPAERERQAAQKQKQA 125 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L ++E A D + LK + + YL RG+ + F LGYAP SL Sbjct: 126 TLTDVLEKAGDAYRKHLKAS--PQAIDYLKRRGVSGETAKRFGLGYAPAGWRSLASVF-- 181 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + + ++ E+GL+I G+ YDRFR+RL+FPIR+ +G+ I FGGR E KYLN Sbjct: 182 PQYDDPQLEESGLVIVGEGDDKRYDRFRDRLMFPIRNVKGECIGFGGRVF-GDEKPKYLN 240 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +FHKG+ LY F A L+ + ++ EGYMDV++L Q G N V Sbjct: 241 SPETPVFHKGRELYGLFEARTALR----------DMGYALVTEGYMDVVALAQLGFANAV 290 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTA T + L++ + +V FDGD G RAA KA+D L + V F+ L Sbjct: 291 ATLGTACTPDHIHKLFRFTEAVVFSFDGDAAGRRAARKALDAALPYASDTRSVKFLFLPA 350 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPDSFIR YG AF + + ++LPL L + +E + RA + + + + Sbjct: 351 EHDPDSFIREYGSEAFARYVGDALPLSRFLIEAASEGCDLGQAEGRAHMASNARPLWTAL 410 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D L+ I + +Q + S P + Sbjct: 411 PDGALKRQLLGEIAELVQLDARDLSDLWSQEAARSGPARGSMAGGAPHPGQASHAPAAPD 470 Query: 476 LSKKPS 481 + Sbjct: 471 WGQPVE 476 >gi|68171252|ref|ZP_00544655.1| DNA primase [Ehrlichia chaffeensis str. Sapulpa] gi|67999334|gb|EAM85980.1| DNA primase [Ehrlichia chaffeensis str. Sapulpa] Length = 588 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 156/634 (24%), Positives = 278/634 (43%), Gaps = 58/634 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + I + I +S+++GQ V +R + CPFH EKTPSF ND KG YYCF Sbjct: 2 NVIDIIKSKIKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVNDEKGLYYCF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD + F S + F ++ LA I G+ LP +T + +++ AT Sbjct: 57 GCGANGDVIQFTSDINALDFKGAINYLAEIYGIDLPQST-------NNKTSITPILDAAT 109 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F L+N Y+ R I + ++ F++GYAP L ++L GF+ + I Sbjct: 110 LWFEEQLRNNH--VAIEYIRSRKISNDTVKKFRIGYAPTY--GLGKYLLSLGFNIDDIKN 165 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 GLL + D F NR+IFPI +S G +I FGGR++ ++ KYLNS + F K Sbjct: 166 TGLLNSQNQ-----DYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKR 220 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +NLY A+ +K + II+VEGYMDVL L Q G+ NVV LGT++T Sbjct: 221 ENLYASHFAVREAKKQGK----------IIVVEGYMDVLMLHQMGISNVVGLLGTSMTSE 270 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 + LW+++ I++ DGD G A+ K+ L L + PG + FV + G+DP Sbjct: 271 HVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFTGKDPYDICIN 330 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKDQKLR 421 G + L+ + L + +W E + N P++ LE +K+ ++ I D + Sbjct: 331 DGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVV 390 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 YY + +++ L +Y K ++ P ++ Sbjct: 391 KYYKKYFYSQIRNL------------QYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEE 438 Query: 482 LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEI 537 + ++ ++ P +L + + + + + + L + + + E + Sbjct: 439 YNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQNIINIKVTLCNHVISKEVL 498 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + E++ + +++ + VDV + + + L + + ++ + Sbjct: 499 LSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILD 558 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + KG+ + L + E+ ++ ++ Sbjct: 559 LR-------LKGQRDLAERLSNQAQEIDNRLREL 585 >gi|283458529|ref|YP_003363157.1| DNA primase [Rothia mucilaginosa DY-18] gi|283134572|dbj|BAI65337.1| DNA primase [Rothia mucilaginosa DY-18] Length = 686 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 157/700 (22%), Positives = 268/700 (38%), Gaps = 88/700 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ I +I YV G + CPFHDE+TPSF+ G Y Sbjct: 5 IRKEDIDEVRARTDIREIIEGYVSLKSAG----IGTFKGLCPFHDERTPSFNVRPQVGSY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD SF+ A+ SF+E+V+RLAA G L P + ++ L+ Sbjct: 61 HCFGCGESGDVYSFVMAMEHTSFVETVERLAARIGYTLHYEGGKPGDRYEAGMRRRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A +FF +L +A + +L RG D A F +GYAP L +HLR +GF++ Sbjct: 121 HKIAAEFFERNLYSADAQEAQRFLGARGFDPAATRKFGVGYAPRGWDHLLKHLRSQGFTD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E++ G+ +G+ YDRFR R+I+PIR+ G+ I FG R L + KYLN+PET Sbjct: 181 EELKATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K + +++VEGY DV++ AG+ V++ G Sbjct: 239 QLYKKSQVLYGIDLAKRDMTK----------TKQVVIVEGYTDVMAAHLAGITTAVATCG 288 Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 TA ++++ ++ I+ FDGD G +AA A + + + + Sbjct: 289 TAFGPGHIKMVRRMITDDGSGGEIIFTFDGDAAGQKAAMAAFEEDQRFVA---QTFVAVA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A LI PL + T + R + I Sbjct: 346 ENGMDPCDLRLHKGDAAVRSLIASRRPLFEFAIDSTLAKYDLATLEGRVLAMRAIAPIIA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQ-----------------QLFQKYITEHSGYGRYWKKNARH 456 IKD+ LR Y + + +L +L + E RY + N Sbjct: 406 GIKDRDLRPAYMRKVSGQLGLELDEIQRAVAYAQNHPKLSRTQQAEAVAAPRYERLNEGP 465 Query: 457 RDQKG------------PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504 + Q G + + + + + + P +E Sbjct: 466 QGQPGMAHTDAPYDPAYDAPPPEDYAAPSAYAGQNAAAHPPSSIQPAAPQPEATAPAVEE 525 Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVR-- 558 + + + L + E+ + R E+ + Sbjct: 526 FLTPDPRDPVARLEKAALEIALQHPELISVEQWRNLATVQFRYRTHREVAAGIIHAATVM 585 Query: 559 ------------------------DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 S ++ + AL + ++RQ Sbjct: 586 APTPGIEWINCVRSGAVEGVHPAIAELAVSPLPVSSAERLPGFVTGALNALF-EQQIARQ 644 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 K ++ ++ Q++A + E+ + L E+ ++ Q+ +Q Sbjct: 645 KSDLMMRLEQLSANPDDEEFEAVQRQLLELEMRRRQLTAQ 684 >gi|222528718|ref|YP_002572600.1| DNA primase [Caldicellulosiruptor bescii DSM 6725] gi|222455565|gb|ACM59827.1| DNA primase [Caldicellulosiruptor bescii DSM 6725] Length = 617 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 136/629 (21%), Positives = 257/629 (40%), Gaps = 50/629 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L + I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 33 ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 88 FGCGVGGNAIHFVMRIENLTFTEALKVLAGKAKIDVDFSQTQSSKDKVLAKQKEELISLH 147 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L + Y+ +RGI + F LG+ P+ R+ Sbjct: 148 NDCLEYFQRQLYLRENMDAARYVLKRGIRKETAKQFGLGFCPEDNNLYEMLSRKYSKEII 207 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + ++ KY+NSP+T++ Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIEDSQAPKYMNSPDTLI 263 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVIVEGYMDVISLHQEGIDNVVGVLGTA 311 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGRNATFRSADI---LYQNGLIVKVMELENAKDPDE 368 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ +D K+ + N + D++ + I ++ Sbjct: 369 YIKKFGKDAFLLKKQNAMFAIDFKVKQLSSNYDLSKSDQKFRFVREYFEKILMPITNEVE 428 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + + E + K Q+ + + Sbjct: 429 RQEYIRKLSQLTQIDEEAILKEFTKNENIKLKRLESIQHFKQVQQKSNLTEEERIKKNDI 488 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + +A+ + +++ L+S + + E + Sbjct: 489 D-----LLSIYVEWANKSESIRNAVAEDDFCTEDIKMLFSSIKNLINEGMELTYSMLLTF 543 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + ++L +L + I +++ + + +++ Sbjct: 544 VNDE---KILSELTSFSSKGFETEEAAKRAIEELKTN--------------NNRMLWLKR 586 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + +G+ EK L ++ ++ + Sbjct: 587 EMLEAQKRGDTEKVLELQMLIRKIKDRKE 615 >gi|299148221|ref|ZP_07041283.1| DNA primase [Bacteroides sp. 3_1_23] gi|315920235|ref|ZP_07916475.1| conserved hypothetical protein [Bacteroides sp. D2] gi|298512982|gb|EFI36869.1| DNA primase [Bacteroides sp. 3_1_23] gi|313694110|gb|EFS30945.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 707 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 158/695 (22%), Positives = 290/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 16 IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 71 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY ++ + + QKG+ Sbjct: 131 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 357 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416 Query: 416 KDQKLRYYYSQAIRDRLQQLF---------------QKYITEHSGYGRYWKKNARHRDQK 460 + +R Y + L +K + R ++ A Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 476 Query: 461 GPSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTL 491 P + + + +GK ++ E +L + Sbjct: 477 TPPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 536 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L ++ + N +++ S + + + Sbjct: 537 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 596 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 597 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 655 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 656 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 690 >gi|148654465|ref|YP_001274670.1| DNA primase [Roseiflexus sp. RS-1] gi|148566575|gb|ABQ88720.1| DNA primase [Roseiflexus sp. RS-1] Length = 651 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 166/658 (25%), Positives = 264/658 (40%), Gaps = 71/658 (10%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67 + I I I YV + Y CPFH + +TP+FH ++CF C Sbjct: 8 DQIKEKIDIVEFISAYVPLRKMGR-----SYVGFCPFHPNTRTPAFHVFPDTQSFHCFGC 62 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 G FL G F E+++RLA AGV L E++++++T L+ A F Sbjct: 63 KASGSVFDFLMRREGVEFREALERLAQRAGVQLQPRTEDEEQQDRLRTRLLEANAAAAAF 122 Query: 128 FHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 F H L K+ R + Y+ R ID E F LGYAPD L +L + + +EA Sbjct: 123 FRHMLVKSQRGEAARAYVASRRIDDATGEAFLLGYAPDDWELLLGYLTGRRGFSPEEVEA 182 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 L + YDRFRNRL+FPIR++RG+++ FGGR L KY+NSP+T LF KGK Sbjct: 183 AGLAIHHETRGYYDRFRNRLMFPIRNARGEIVGFGGRAL-GDAQPKYMNSPQTPLFDKGK 241 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY A + ++ + ++VEGY+DV+ Q G +NVV+ LGTALT Sbjct: 242 VLYGLDLARDAIR----------HADATVIVEGYIDVIIAHQHGFRNVVAPLGTALTADH 291 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------IPGNRV 348 + + KL+ + L D D G+RA K + + + Sbjct: 292 VAQVKKLARTVYLALDADAAGVRATLKGLQTLQSQPEGELIAITSPHGVIGLQRQQDVEI 351 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + L G+DPD I+ + + + P +D + T + ++ +AE + Sbjct: 352 RILTLPEGKDPDEVIQ-EDPDRWRAALAAARPAMDFYIEALTSDLDLSSGRGKAEAVERV 410 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 +N I + +Y Q + + + + G + R DQ ++ Q Sbjct: 411 APLLNQIASPVEQAHYVQVLARLIDVEERYILAALGGKAHPEDR-HRPADQPRATRTAEQ 469 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----------------DIRYD 511 S + S +E LL +I PA ++L D + Sbjct: 470 SPPDGARSSAPTPTQEEYLLGWVIRFPAARAAVEEKLHRDLSPYPALQSLLSGTIDELFA 529 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 +E + LW + PE Q L L + ++V + Sbjct: 530 RDECRALWRAWIAAP---GGSDPETWAQTLSAP-----LNDVAQRVLGLHAPQPQEYRIV 581 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 D + A + + R +I + A+ T + + E L+ L +V I+ Sbjct: 582 NDALEC-----ATILQRDVAKRWLAQIARMQAEATGETDQEM---LLEQLVQVKQFIN 631 >gi|260171923|ref|ZP_05758335.1| DNA primase [Bacteroides sp. D2] Length = 693 Score = 322 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 158/695 (22%), Positives = 290/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 2 IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY ++ + + QKG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLF---------------QKYITEHSGYGRYWKKNARHRDQK 460 + +R Y + L +K + R ++ A Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462 Query: 461 GPSQRLMQSS-----------------------------LVKGKLSKKPSLREAALLLTL 491 P + + + +GK ++ E +L + Sbjct: 463 TPPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L ++ + N +++ S + + + Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676 >gi|270295812|ref|ZP_06202012.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273216|gb|EFA19078.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 698 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 157/700 (22%), Positives = 283/700 (40%), Gaps = 96/700 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S +L + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 ++ +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G V LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E+ + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + R Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAEAG 462 Query: 458 --------------DQKGPSQRLMQS------------------SLVKGKLSKKPSLREA 485 PSQ L +GK ++ E Sbjct: 463 VNGSHTAATSPDAQQAGYPSQSLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKYER 522 Query: 486 ALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526 +L ++ + + + +L ++ + N +++ + Sbjct: 523 LILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEAAERI 582 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + +L +L + L + Sbjct: 583 HNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMINF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 ++ ++ + + + + + ++ +E++ Sbjct: 642 KYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 681 >gi|225009966|ref|ZP_03700438.1| DNA primase [Flavobacteria bacterium MS024-3C] gi|225005445|gb|EEG43395.1| DNA primase [Flavobacteria bacterium MS024-3C] Length = 662 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 144/676 (21%), Positives = 269/676 (39%), Gaps = 66/676 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + I +IG +V + N + PF +E++PSF + K + Sbjct: 2 ISKNTIDKVYETARIEEVIGDFVQLKKSGAN-----FKGLSPFTEERSPSFMVSPVKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G+ ++F+ ++ E+++ LA + + E+KE + + + Sbjct: 57 KDFSSGKGGNVVAFVMEHEHFTYPEAIRYLAKKYQIEIEETIQSDEQKEAANERESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L + + Y ERG I+ F+LGY D + + + Sbjct: 117 SEYAARYFSEVLLTSAAGQAIGLSYFRERGFTDETIKKFELGYCLDEWDGFTKSAIENKY 176 Query: 179 SEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 + + GL I + ++DRF+ R++FPI S G+V+ FGGR L++ + KY Sbjct: 177 DIKYLEATGLTIVKPTNEQATAKTFDRFKGRVMFPIHSMSGRVLGFGGRILTQDKKAAKY 236 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPE+ +++K K LY + A + K LVEGY DV+ + Q+G+ N Sbjct: 237 LNSPESDIYNKSKVLYGIYIAKQAIAKQ----------DNCYLVEGYTDVIQMHQSGIHN 286 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VVSS GTALT Q+RLL +L+ I + FDGD GLRA+ + IDL L G V Sbjct: 287 VVSSSGTALTSDQIRLLSRLTKNITVLFDGDAAGLRASIRGIDL---ILEQGMNVKICTF 343 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 GEDPDSF + + + + + + N P +RAE + I Sbjct: 344 PEGEDPDSFSKKHVLELLTEYLETNSQDFIQFKASILVKEAANDPVKRAETIRDIVGSIA 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA----RHRDQKGPSQRLMQS 469 I D R Y Q+ + Q + + + ++++ Sbjct: 404 KIPDAIQREVYLQSCAQIMDISEQVLYNTLAQVSKTAASAKGVLQKSGGVPEERFKVVKP 463 Query: 470 SLVKGKLSKKPSLREAALLLTLI---NHPAILQE---------------------QYQEL 505 + + + E ++ L+ NH A ++ ++++ Sbjct: 464 EAPEVEKLNVQWVLEKKIIEILLLYGNHKATFEDLILASNEAGELVLTPKKVEQKVFEKV 523 Query: 506 ------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 +I + + ++ L + F + + F + E + L + + Sbjct: 524 YLDLQEDEIELTQDHFKGIYFELIASFNQSENFDLPVFIRNQSEELSASISSILMEEEKY 583 Query: 560 AGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKT 614 + D G Q + L R L+ ++ +++ + + + E+ Sbjct: 584 VLGQWEKKDIFPKDKALGVSQLVTETILSLRCFLIKKRMGVMQETTRDQEKDHQEVKEEL 643 Query: 615 AILISILHEVHIQIHQ 630 + + ++ ++++ Sbjct: 644 VSYLQLYALLNKKLNR 659 >gi|307719957|ref|YP_003891097.1| DNA primase [Sulfurimonas autotrophica DSM 16294] gi|306978050|gb|ADN08085.1| DNA primase [Sulfurimonas autotrophica DSM 16294] Length = 556 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 145/594 (24%), Positives = 251/594 (42%), Gaps = 47/594 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L + I +++G Y++ + N + A CPFHDEK+PSF + K Y Sbjct: 2 ISQDSIEALKARLDIVDVVGNYIELKKAGGN-----FKAPCPFHDEKSPSFVVSPQKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ ++ E++++LA L D K K +++ Sbjct: 57 HCFGCGAGGDSVKFVMEYEKLNYPEALEKLADSYNFTLTYTDNKHNKPRSQ------VMD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +++ L ++++ Y+ ERGI +IE F +GYAP+S + ++R + FS ++ Sbjct: 111 KLNEWYQMLL--SKNQTALNYIKERGIYESSIEKFGIGYAPES-QATLNYIRSQQFSIKE 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I+ G++ +Y RF R+ FPI S+ G ++ FGGRT+ G KY+NSPET F Sbjct: 168 AIDMGVVGYNQERNQTYARFVERITFPIFSANGSIVGFGGRTI-TGHQAKYVNSPETAFF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A L K II+ EGY+DV+ L QAG N V++LGTAL Sbjct: 227 NKSRLLYAYHLAKQSLHKK----------QEIIITEGYLDVIMLHQAGFDNAVATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K SPR+V+ +DGD G AA KA L G V+ S G DP Sbjct: 277 THEHLPLLRKGSPRVVMAYDGDKAGRAAALKASKL---LSASGFNGGVVVFSGGLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + E+ P ++ + + P + + + L+ Sbjct: 334 VKEGRVEELSNMFREAKPFIEFVLDEILSLYNLKDPKAKESCMQEGIAYLKTL-SPILQE 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + RL L + + + ++ + + S + Sbjct: 393 EYKTYLASRLGGL----------------GVSPSLLKLNTQTNTNRQNIPQQRNSAHRDM 436 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E AL+ T++ P +++ + + + +S + + + + + Sbjct: 437 WELALIKTILEKPEYIEQVLDVIDPSLLQFHSYE--FSLVLQGKQDAPEVMAIMVDDTIT 494 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 E L + NI ++A + K +++ K Sbjct: 495 SLKDEEALNAELITFLTKYYERELKKVNIASNISFEEKAFYIRKFRGKIAKLKR 548 >gi|209559153|ref|YP_002285625.1| DNA primase [Streptococcus pyogenes NZ131] gi|209540354|gb|ACI60930.1| DNA primase [Streptococcus pyogenes NZ131] Length = 604 Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|228473053|ref|ZP_04057810.1| putative DNA primase [Capnocytophaga gingivalis ATCC 33624] gi|228275635|gb|EEK14412.1| putative DNA primase [Capnocytophaga gingivalis ATCC 33624] Length = 655 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 162/663 (24%), Positives = 283/663 (42%), Gaps = 68/663 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + I + +IG ++ R + Y PF +E+TPSF + +K + Sbjct: 2 ITKESIDKVYDAIRVEEVIGDFIQLKRSGSG-----YKGLSPFTNERTPSFSVSPAKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++FL S++E+++ LA + L E+K K + L + Sbjct: 57 KDFSSGKGGNAIAFLMEHEHFSYVEAIRYLAKKYNIELEETQQSEEEKSKANEKEGLYFV 116 Query: 121 IEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+FH +L + + + Y ERG IE+F+LGY+PDS + + +KG Sbjct: 117 SEYARDYFHKTLLESEEGKAIGGTYFKERGFTPEMIEVFQLGYSPDSWSAFTDEALKKGM 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 + + + GL I +++ DRFR R++FPI S G+V+ FGGR LSK + KYLNS Sbjct: 177 NLSHLEKTGLTIVKEDNRK-IDRFRGRVMFPILSMSGRVLGFGGRILSKEKQKEAKYLNS 235 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ ++HK + LY F A ++ K LVEGY DV+ L Q G++NVV+ Sbjct: 236 PESDIYHKSQILYGIFQAKPFIAK----------EDSCYLVEGYTDVIQLYQRGIKNVVA 285 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S GTALT+ Q+RL+ +L+ I + +DGD GLRAA + +D++L G V G Sbjct: 286 SSGTALTQEQIRLIRRLTQNITILYDGDSAGLRAAIRGVDMILAE---GMNVRICTFPEG 342 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF + ++ + + + + P RA+ + I+ I Sbjct: 343 EDPDSFAKSNSLEEIQEYFKTNTQDFIRFKASLLMSETKDDPLRRADTIRDMIESISKIT 402 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D Y + ++ S + A+ ++ K + + + + Sbjct: 403 DPIKSEIYVRECAQIMEISEDVLFASLSQINQRELIKAQ-QELKKAKKETALAPVQPVER 461 Query: 477 SKKPSLREAALLLTLINHP-----------------------------AILQEQYQEL-- 505 + E L+ L+ + + ++ + EL Sbjct: 462 VSPIMVLERELIKYLLLYGTKECVFYENFLYYDKETGEEKNQELSQRMKVYEKLFLELQA 521 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL--- 562 +I E ++ + F + E +I L + L+ + L Sbjct: 522 DEIELTTPEFKEFYDFFIRKYQEGLE-DFSKIVHELSPQ-IASLVATFQAEEEKIRLHNW 579 Query: 563 -WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +I + +L L R L++++ EE+ +++A + ++G + L Sbjct: 580 GRKDVVVKSIEEDLAVAINSLILNFRKMLINKKIEELREKVASIESQGGDP-----MEEL 634 Query: 622 HEV 624 EV Sbjct: 635 QEV 637 >gi|160883189|ref|ZP_02064192.1| hypothetical protein BACOVA_01158 [Bacteroides ovatus ATCC 8483] gi|156111414|gb|EDO13159.1| hypothetical protein BACOVA_01158 [Bacteroides ovatus ATCC 8483] Length = 693 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 2 IDQVTIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY ++ + + QKG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + + Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462 Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +GK ++ E +L + Sbjct: 463 TSPEDVPMPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L ++ + N +++ S + + + Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676 >gi|317479749|ref|ZP_07938871.1| DNA primase [Bacteroides sp. 4_1_36] gi|316904119|gb|EFV25951.1| DNA primase [Bacteroides sp. 4_1_36] Length = 700 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 155/702 (22%), Positives = 283/702 (40%), Gaps = 98/702 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D + Y RG IE F+LGY +S +L + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGQSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 ++ +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G V LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E+ + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + R Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAEAG 462 Query: 458 ----------------DQKGPSQRLMQS------------------SLVKGKLSKKPSLR 483 PS+ L +GK ++ Sbjct: 463 VNGSHTAATATSPDAQQAGYPSESLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKY 522 Query: 484 EAALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFS 524 E +L ++ + + + +L ++ + N +++ + Sbjct: 523 ERLILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEATE 582 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + +L +L + L + Sbjct: 583 RIHNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMI 641 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 ++ ++ + + + + + ++ +E++ Sbjct: 642 NFKYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 683 >gi|23465713|ref|NP_696316.1| DNA primase [Bifidobacterium longum NCC2705] gi|23326394|gb|AAN24952.1| DNA primase [Bifidobacterium longum NCC2705] Length = 702 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 142/713 (19%), Positives = 254/713 (35%), Gaps = 103/713 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKT SF+ S G + Sbjct: 5 IKKEDVEKVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTGSFNVRPSLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CF C + GD ++ F E+V+ LA + L + P E +T L+ Sbjct: 61 HCFGCGLGGDVFKYVEQSENIDFREAVELLADKYHIELHYENSGNGPAHENTGSKRTRLL 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + L R E F GYAP +L HL KGF Sbjct: 121 EACEEAQRFFVSQILTKEALPARKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 ++++I++AGL G YD FR R+ +PIR S G+ + FG R L + + + KY+N+ Sbjct: 181 TQKEILDAGLARQGQR--GIYDYFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T L+ K + LY A + + K +++VEGY DV+++ AG+ ++ Sbjct: 239 PDTQLYRKTQVLYGIDLAKSAIVKK----------RQVVIVEGYTDVMAMHLAGIDTAIA 288 Query: 297 SLGTALTEYQLRLLWKLS----------------------PRIVLCFDGDDPGLRAAYKA 334 + GTA +++ +L RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIVRRLIADDSLGAVQLVGPLKVKDQPLSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L ++ + DP G A LI + PL D + Sbjct: 349 FGLDSAFL---SQTFVAVADDNLDPCDLRIERGNEAVRSLIARAKPLYDFVIDAAISRFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR------ 448 + + + I+D+ L Y++ R+ + E R Sbjct: 406 LTYTPGQVGAMKAVAPLVAQIRDRSLWDAYARKSAGRIGVGLEVMRREVMNARRQMHVRD 465 Query: 449 -----YWKKNARHRDQKGPSQRLMQSSLVKG-------------KLSKKPSLREAALLLT 490 ++ R + P + + K+ + E + Sbjct: 466 EDAYAPKRRFERDEPRVEPGTNPYANPATRKALERRDAAEQAYFKIDDAVFIAEQQFMAV 525 Query: 491 LINHPAILQE-QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 LI P + + +L + + + L+ + + P+ + + G + Sbjct: 526 LIQVPRAIDRTMFGQLTIDHFMTSVFRTLFQAIAAAGGLPSDDTPQGLWMHNLTKAGGPM 585 Query: 550 LKQLDRQVRDAGLWSATTEA----------------------------NIVDVRQGYQQA 581 L Q+ ++ L ++ Q Y Sbjct: 586 LNQVINELAVMPLPLPGDDSGNGAQPVQANVSGGGVGVNGGAAAVQLRPATPEEQRYATE 645 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ ++++AQ+ + E+ L+ + + +++Q Sbjct: 646 LLTRLLDMGFMRQIGLAKRRMAQLP---DGEEKITLLGQIARMETARKDLQAQ 695 >gi|237714395|ref|ZP_04544876.1| DNA primase [Bacteroides sp. D1] gi|237719149|ref|ZP_04549630.1| DNA primase [Bacteroides sp. 2_2_4] gi|262408227|ref|ZP_06084774.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294806783|ref|ZP_06765610.1| DNA primase [Bacteroides xylanisolvens SD CC 1b] gi|229445559|gb|EEO51350.1| DNA primase [Bacteroides sp. D1] gi|229451528|gb|EEO57319.1| DNA primase [Bacteroides sp. 2_2_4] gi|262353779|gb|EEZ02872.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294446065|gb|EFG14705.1| DNA primase [Bacteroides xylanisolvens SD CC 1b] Length = 707 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 16 IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 70 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 71 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 130 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY ++ + + QKG+ Sbjct: 131 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 191 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 249 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 250 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 299 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 300 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 356 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 357 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 416 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + + Sbjct: 417 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 476 Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +GK ++ E +L + Sbjct: 477 TSPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 536 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L ++ + N +++ S + + + Sbjct: 537 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 596 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 597 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 655 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 656 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 690 >gi|332667620|ref|YP_004450408.1| DNA primase [Haliscomenobacter hydrossis DSM 1100] gi|332336434|gb|AEE53535.1| DNA primase [Haliscomenobacter hydrossis DSM 1100] Length = 649 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 161/664 (24%), Positives = 287/664 (43%), Gaps = 58/664 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I+++ I ++G +V+ RR N Y CPFH+EK+PSF+ N ++ Sbjct: 1 MILPKS-IQEVNDAAKIEEVVGDFVNLKRRGAN-----YSGLCPFHNEKSPSFNVNPARN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT--DLI 118 + CF C GD ++F+ S+ E+V+ LA + L + +++++ Q L Sbjct: 55 IFKCFGCGKAGDPITFVMEHEQLSYPEAVKYLARKYRIELEETESSDQQRQEQQAIDSLF 114 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + A +FF L + R Y +RG ++ F LG+A + +L + + Sbjct: 115 LVNQFAQEFFQTQLFDTDKGRSIGLSYFKQRGFREETLKKFGLGFAQNDMDALLRAGKLR 174 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 G++ E + + GL+ + D FR+R++F I + G+VIAF GR ++K + KY+N Sbjct: 175 GYNAELLKKLGLVTQYER-----DFFRDRVMFSIHNLTGKVIAFAGRIMAKDPKQPKYIN 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +++K K LY F A ++ +LVEGY DV+SL QAG++NVV Sbjct: 230 SPETEIYYKSKVLYGIFFAKKAIR----------QFDECLLVEGYTDVISLHQAGIENVV 279 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++AA + +DL L V VLL Sbjct: 280 ASSGTALTPDQIRLIKRFTNNIKIIYDGDAAGIKAALRGLDLALAE---DMNVRLVLLPD 336 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPDS+I+ G AF + E + + + P RA + + N I+ I Sbjct: 337 GEDPDSYIQKVGSEAFLLYLKEKGKDIVQFETELLLKEAGDDPTRRAGVLGQIANTISKI 396 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465 K+ R Y + R L + I E + R + + + P + Sbjct: 397 KNPLRRDEYVKVTRQVLGVDEGRMIFEINKLLRRDLEKHQALEGITPPEADGSFPTEEPR 456 Query: 466 -LMQSSLVKGKLSKKPSLREAALLLTLI----------NHPAILQEQYQELADI--RYDN 512 + + +LS +E + LI ++ + Q + + D+ +D+ Sbjct: 457 YQTNPVMPETELSVGDEFQEKDIARILISAGGQWFDQKHNTTVAQYVWINIEDVIDYFDS 516 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA--- 569 +K+ + + + + L + W E Sbjct: 517 ALYKKVVIEILQRINQGQDISVQYFINHADPEVRQLAATVLTSPYEFSENWEKKHEIFLN 576 Query: 570 --NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHI 626 D + +++ L R ++ +I ++ +A+ L L + Sbjct: 577 QRKPEDNYILDAELAVGQLKYKKLDRLIKQNSAKIKELNNDYDAQSPFIQLNRKLQIMRD 636 Query: 627 QIHQ 630 ++ + Sbjct: 637 ELAK 640 >gi|294646296|ref|ZP_06723948.1| DNA primase [Bacteroides ovatus SD CC 2a] gi|292638377|gb|EFF56743.1| DNA primase [Bacteroides ovatus SD CC 2a] Length = 693 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 155/695 (22%), Positives = 286/695 (41%), Gaps = 92/695 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 2 IDQITIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA + + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYNIEIKERELSDEEKFVQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY ++ + + QKG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTEAHDAFAKEAIQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQTFISEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + + Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRRETQAEKRAEQTERERRMAERTAMMSQGS 462 Query: 458 --------------------------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 +GK ++ E +L + Sbjct: 463 TSPEDVPIPNGDIPLPPEVDGGYTDVPPALQEDSYASFIPQEGKEGQEFYKFERLILQAV 522 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + +++ +L ++ + N +++ S + + + Sbjct: 523 VRYGEKIMCNLTDEEGNEIPVTVIEYVVNDLKEDELAFHNPLHRQMLSEAAAHMHDSNFI 582 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LALYKRFRL 590 + +L L + + ++ + D + Y+ L + ++ + Sbjct: 583 AERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYEMVPMLMINFKYAI 641 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + + + + + EK L+ +E+ Sbjct: 642 VTEELKHMLYALQDPALAHDNEKCDSLMQRYNELR 676 >gi|114567028|ref|YP_754182.1| DNA primase, DNAG [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337963|gb|ABI68811.1| DNA primase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 593 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 156/591 (26%), Positives = 262/591 (44%), Gaps = 33/591 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y ++++L + I ++ + V+ R+ YW CPFH EKT SF K + Sbjct: 4 YDDQVLEEILNRLDIVEIVSESVNLSRKGN-----RYWGLCPFHQEKTASFCVTPDKNMF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF CH GD SF+ G F E+++ LA AG+ L V + K+ + +I + + Sbjct: 59 YCFGCHAGGDIFSFVMKRDGLEFREAMEYLAGKAGIEL--VKSRSGKQTDHRKPVIEVNQ 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F+ L + YL RG+++ I+ ++LGYAPD L EHL +KG+S+E Sbjct: 117 AAVEFYQQVLAGKLGQEAREYLRRRGLEAATIKKYQLGYAPDGWTRLEEHLLKKGYSQEY 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + +GL+ +N YD R RL+FPI G ++ GGR L KYLN+PET LF Sbjct: 177 LKLSGLIKRSENRNNFYDLLRRRLVFPIMHYNGDIVGLGGRVL-DDSLPKYLNTPETELF 235 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K LY F A + ++ ++ I+VEGYMD + L Q G+ NVV+++GTAL Sbjct: 236 SKRKVLYGLFQARDSIR----------QANKAIIVEGYMDCIKLQQLGINNVVATMGTAL 285 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q RLL + +++L +DGD+ G R +A+++ G + + V L GEDPD + Sbjct: 286 TSEQARLLQRYCEKVLLLYDGDEAGQRETIRALEI---LGNEGLKASVVSLPMGEDPDDY 342 Query: 363 IRCYGKTAFEKLIVESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I YGK F + I + ++ R + + +L+ I + + + Sbjct: 343 IEKYGKEEFLRYIQNNKLSNIEFKINRYLSREKELNLESQIRTINYLRKDIGQLNSELEK 402 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 YY + + +L+ E R R++ S +++ + Sbjct: 403 DYYIKILARKLKIEENIVYRELKKRERDISGIKRNK-----------SKIIRDNIKYVNY 451 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 +L + P + + + + +L+ L E + Sbjct: 452 GINEKILAAMFKKPELFEYIKNRIGLEFLEERDLRALAGIYEKLKDNDSDDHLERLGLLA 511 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++GFG +L + + L + + ++ A +F L Sbjct: 512 NQQGFGSAFARLALLMEEESLPGEMEIKRFIRQVERKEEEQAWKNQFYRLK 562 >gi|187250728|ref|YP_001875210.1| DNA primase [Elusimicrobium minutum Pei191] gi|186970888|gb|ACC97873.1| DNA primase [Elusimicrobium minutum Pei191] Length = 578 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 154/629 (24%), Positives = 281/629 (44%), Gaps = 57/629 (9%) Query: 4 PRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+++ + I L+ +YV R Y CCPFH+EKTPSF + +G + Sbjct: 2 SDKIIEEIRDRVDIVELVREYVPSLKRAGK-----TYKGCCPFHNEKTPSFTVSQDRGLF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD +FL SF E+ ++LA AG+ + ++ EK + + +L++ Sbjct: 57 YCFGCQTGGDVFAFLMKTENLSFSEAAKKLAERAGLEWKKEEVLTQE-EKNRLEARKLLD 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F++ +L +++ YL +R + +E F++G+ P +L + G++ Sbjct: 116 FAKVFYNKTLLSSQGNEARGYLKKRSLTKETVEKFEIGFTPQGVDALSKAALANGYNANL 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + AGL G Y FR+R++FPI + RG+ + FGGR +GE KYLNSPETILF Sbjct: 176 LRSAGLAAQGQYGVRDY--FRSRIMFPIINHRGETVGFGGRIFGEGEP-KYLNSPETILF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY A ++K +++ IL+EGYMDV+ + Q+G+ N V+ LGT+ Sbjct: 233 SKSRVLYGLNFAGPEIRK----------ANYSILLEGYMDVIGVMQSGIGNCVAPLGTSF 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDS 361 E +LL + S V+ FD D G++A+ + + + G V G DPD Sbjct: 283 NEEHAKLLKRYSENAVILFDPDAAGIKASLRTALI---LIQQGLFVKVATLGEEGLDPDE 339 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCINHIKDQKL 420 FI YGK FE ++ +++ ++D + N TP + ++ L ++ D + Sbjct: 340 FINKYGKEKFENILADAVDIIDFQADVLIKQHGGNLTPQNKTQIAAQLMEIVSVQPDPIV 399 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + + ++L K R P+ ++ ++++ Sbjct: 400 KSEWIKIVSEKLSV--------EEHLLTPKKTAVNTRRNTPPAPQVKKTNIP-------- 443 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + E L+ L+ PA + + + L + ++ + ++ S + + Sbjct: 444 -VEEEDLVAWLLKSPAHITQAQE-LDESKFTSRACYEIISTMDEILKQTPS--------- 492 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E L+K+L + S + + + A +R LS++ ++ Sbjct: 493 -TENIAPMLIKKLPQHENFILKISMAATPKDFNPARDIRDCAAKIERNY-LSKKLAALKA 550 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 +I ++ E L+ +E+ QI Sbjct: 551 EIKKMGVGSVPE---ALLRAQNELQKQIK 576 >gi|50913962|ref|YP_059934.1| DNA primase [Streptococcus pyogenes MGAS10394] gi|50903036|gb|AAT86751.1| DNA primase [Streptococcus pyogenes MGAS10394] Length = 604 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISNVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|139474033|ref|YP_001128749.1| DNA primase [Streptococcus pyogenes str. Manfredo] gi|134272280|emb|CAM30533.1| DNA primase [Streptococcus pyogenes str. Manfredo] Length = 604 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 274/637 (43%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|256425403|ref|YP_003126056.1| DNA primase [Chitinophaga pinensis DSM 2588] gi|256040311|gb|ACU63855.1| DNA primase [Chitinophaga pinensis DSM 2588] Length = 662 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 154/677 (22%), Positives = 296/677 (43%), Gaps = 65/677 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ +L I I ++G +V +R N Y CPFH+EK+PSF SK + Sbjct: 2 ISQNTIQQILSRIDIVEIVGNFVKLKKRGAN-----YLGLCPFHNEKSPSFTVTPSKEIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ + F+ S++E+++ LA VP+ P++ +++ + L + Sbjct: 57 KCFGCGQSGNAIKFIMEHEKYSYVEALRWLAQKYDVPIEETEVSPEVRQQQLMADSLYII 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A ++F ++L N + + Y +ERG I F+LGY+ ++ + + KG+ Sbjct: 117 NNFAREYFSNTLFNTEEGQNVGLSYFEERGFTQETIRKFQLGYSLNTWDAFTKTALAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + + GL+ + D +R R+IFPI + G+V+ FG R L K + KY+NSP Sbjct: 177 NLDYLQKTGLVTVRNEQPG--DNYRGRVIFPIHNQSGKVLGFGARILVKNDRAPKYVNSP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E ++ K + LY + A + + K + +LVEGY DV+SL QAG++NVV+S Sbjct: 235 ENEIYVKNRVLYGTYFARHAIDKL----------NECLLVEGYTDVVSLHQAGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT++QLRL+ K + + + FDGD+ G++AA + +D+ + G V VL+ E Sbjct: 285 SGTSLTQHQLRLIKKYTNNLTILFDGDNAGVKAALRGLDMA---IEEGLNVKLVLIPDKE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-- 415 DPDS+++ G AF + I + + + + + N +++L + I+ I Sbjct: 342 DPDSYVQKIGADAFREFIANNKQDFVLFKLQISMQEAGNDSSRKSQLVNEIAETISKIDK 401 Query: 416 -KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +D + Y + L+ Q I + + R + + + + + + Sbjct: 402 TEDFTRQQDYIRQCSQLLKIDEQGLINLVNKFIRERFQKKEQQFNRENNNNNNAAPAMDD 461 Query: 475 KLSK---------------------KPSLREAALLLTLINHPA--ILQEQYQELADIRYD 511 LS +E L+ L+ +E +AD + Sbjct: 462 DLSPEAIAAMEAMENGGEPAVNFFNPDEKQERELVKILLRFGDKPFSEEDQSTVADYIFH 521 Query: 512 NN-ELQKLWS-----FLFSDFV---EQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDA 560 + + L + ++ +Q ++ ++ L+ + D++ + Sbjct: 522 LPYDFESLADNEMVKRILREYKVMYDQDSLPDKKWFLYHNDQEVATLVVAIMEDKEAELS 581 Query: 561 GLWSATTEANIVDVRQGYQQALAL---YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 W E + V Y + Y R + + E ++++ + T + K + Sbjct: 582 TAWKDKFEIDTVYGDNAYLKDTISTTNYLILRKIRKMIMENQQEMERSTVFEDQIKCIEM 641 Query: 618 ISILHEVHIQIHQIESQ 634 L + ++ Q Sbjct: 642 HKHLKVLENELTQGLGT 658 >gi|282857455|ref|ZP_06266688.1| DNA primase [Pyramidobacter piscolens W5455] gi|282584740|gb|EFB90075.1| DNA primase [Pyramidobacter piscolens W5455] Length = 580 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 158/621 (25%), Positives = 264/621 (42%), Gaps = 46/621 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + + I L+G V ++ N Y CPFHDEKTPSF + +G ++C Sbjct: 3 DEIVAKIKDAVDIVELVGDSVRLVKKGRN-----YSGLCPFHDEKTPSFIVSPDRGTWHC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD SF+ G SF E+++ L AG+ +P + + TDL ++E+A Sbjct: 58 FGCGKGGDVFSFVMEKEGLSFPEALEYLGRRAGIEIPRRKNRGQT-----TDLYSVMEMA 112 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 DF+ LK A YL R + + F+LG++P + +L + LR++G ++E+++ Sbjct: 113 VDFYRAELKGAAGAVGKGYLSRRSMSVQDADAFELGWSPSAWRALNDALRREGVTQEQLL 172 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + GL+I G+ YDRFR R+IFPIR+ G+ IA GGR + GE KYLNSPE L++K Sbjct: 173 KCGLVIQGEKGC--YDRFRGRVIFPIRNVSGRAIALGGR-IVDGEGAKYLNSPEGPLYNK 229 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 +NLY A N +++ R ILVEGYMD + L G + V+SLGT+LTE Sbjct: 230 KENLYLLDKAKNAIREKGRS----------ILVEGYMDAIRLHMHGHRETVASLGTSLTE 279 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 Q LL + S + +C+D D G A + + + G +V VL G+DPD ++ Sbjct: 280 EQALLLKRFSDKCYICYDSDTAGQNATLRGMYI---LQRAGLQVFVVLFPGGKDPDEMLQ 336 Query: 365 CYGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G F + + + PLV D +A+ L + + Sbjct: 337 SEGGEQLFNEAVENARPLVLHHIGLFKAA---AEKDGQAKAAEELLEGMAQLT-AVELAP 392 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y Q I + + +E + R + + R + + ++ + Sbjct: 393 YMQEIAHAVGLPDYQLASELNRLRRGRRLSPRAEESLAGDVQPLELETADSETPPNCDPA 452 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E LL L + + + L+ + L + EQ L + Sbjct: 453 ETGLLYLLWISRELRMSASVAEVVRMFQDPRLKDIAGALLT--GEQPESLEHRWLEMGDH 510 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L A + ++ ++ K+ R + ++ + Sbjct: 511 FPMSAL-------SGGASFCDTLSGTDMEKWQKLSADQGRRVKQARYIQ-----LKAMMF 558 Query: 604 QVTAK-GEAEKTAILISILHE 623 + A + + + L + L Sbjct: 559 RGEASPEDLTEYSALAAELKR 579 >gi|312622968|ref|YP_004024581.1| DNA primase [Caldicellulosiruptor kronotskyensis 2002] gi|312203435|gb|ADQ46762.1| DNA primase [Caldicellulosiruptor kronotskyensis 2002] Length = 617 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 136/629 (21%), Positives = 257/629 (40%), Gaps = 50/629 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L + I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 33 ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK---EKIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 88 FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKINVDFSQTQSSKDKVLAKQKEELISLH 147 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L + Y+ +RGI + F LG+ P+ R+ Sbjct: 148 NDCLEYFQRQLYLRENMDAARYVLKRGIRKETAKQFGLGFCPEDNNLYEMLSRKYSKEII 207 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + ++ KY+NSP+T++ Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 264 FSKSKVLYGLNIAKSS------------KEKDFVIVEGYMDVISLHQEGIDNVVGVLGTA 311 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGRNATFRSADI---LYQNGLIVKVMELENAKDPDE 368 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + I ++ Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKVKQLSSNYDLSKSDQKFRFVREYFEKILMPITNEVE 428 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + + E + K Q+ + + Sbjct: 429 RQEYIRKLSQLTQIDEEAILKEFTKNENIKLKRLESIQHFKQVQQKSNLTEEERIKKNDI 488 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + +A+ + +++ L+S + + E + Sbjct: 489 D-----LLSIYVEWANKSESIRNAVAEDDFCTEDIKMLFSSIKNLINEGMELTYSMLLTF 543 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + +L +L + I +++ + + +++ Sbjct: 544 VDDE---RVLSELTSFSSKGFETEEAAKKAIDELKTN--------------NSRMLWLKR 586 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ + +G+ EK L ++ ++ + Sbjct: 587 EMLEAQKRGDNEKVLKLQMLIRKIKDRKE 615 >gi|160890816|ref|ZP_02071819.1| hypothetical protein BACUNI_03261 [Bacteroides uniformis ATCC 8492] gi|156859815|gb|EDO53246.1| hypothetical protein BACUNI_03261 [Bacteroides uniformis ATCC 8492] Length = 698 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 157/700 (22%), Positives = 284/700 (40%), Gaps = 96/700 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIYDVVSDFVTLRKRGVN-----YVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ S+ E+++ LA G+ + + E+K + + L + Sbjct: 57 KCFACGKGGNAVHFIMEHEQMSYPEALKYLAKKYGIEIKERELSSEEKIAQGERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S +L + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRSRGFRDDIIEKFQLGYCTESHDALAQEALKKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 ++ +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKDYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLAGATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G V LL Sbjct: 286 ASSGTALTSGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNVKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E+ + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNATEFQAFIQENETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISII 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----------------------- 452 + +R Y + L + ++E + + Sbjct: 403 PEAIVRDVYIKECAQLLHVEDKLLVSEVAKRREKQAEQQAERAERERRSANAARANAETG 462 Query: 453 ---------NARHRDQKGPSQRLMQS------------------SLVKGKLSKKPSLREA 485 N + PSQ L +GK ++ E Sbjct: 463 VNGSHTAATNPDAQQAGYPSQSLPAGLPSETPPPFPPEEEYVSFIPQEGKEGQEFYKYER 522 Query: 486 ALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDF 526 +L ++ + + + +L ++ + N +++ + Sbjct: 523 LILKMVVLYGERVMCNVTNEEGQETPITVTEYIVNDLKEDELAFHNPLHRQILTEAAERI 582 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + +L +L + L + Sbjct: 583 HNEGFTAERYFVAH-PDPVISKLSVELISNRYQLRKSQIEQMVTDEERLYELIPRLMINF 641 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 ++ ++ + + + + + ++ +E++ Sbjct: 642 KYAIVCEELKHTLFALQNPAIANDETQCNSIMERYNELNK 681 >gi|254443947|ref|ZP_05057423.1| DNA primase catalytic core, N-terminal domain family [Verrucomicrobiae bacterium DG1235] gi|198258255|gb|EDY82563.1| DNA primase catalytic core, N-terminal domain family [Verrucomicrobiae bacterium DG1235] Length = 631 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 156/648 (24%), Positives = 269/648 (41%), Gaps = 55/648 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+DL I I +++ + V + + DY PF++EKTPSF+ + KGF Sbjct: 3 AIKPSSIRDLKDRINIYDVVSREVALKKAGS-----DYKGLSPFNNEKTPSFYVSPDKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 Y CFS GD +SF+ +F+E+V+ LA L +E+ + +L Sbjct: 58 YKCFSSGNAGDAISFVMETERLTFVEAVETLAKRFNFELEYEQGSSHAREERSLRQELFD 117 Query: 120 LIEVATDFFHHSLKNARDKRLH---YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L E+ATDF+H Y+L+ R FK+G+AP + +L E + ++ Sbjct: 118 LHEIATDFYHEQFLATNKAGDWIRNYWLEGRKFSLDIASEFKIGFAPINSVALGEIVVKR 177 Query: 177 GFSEEKIIEAGLLI--DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL------SKG 228 GFS+E I +GL G + RFR RL+ PIR +G+V AF R L Sbjct: 178 GFSKEAIEASGLFYAKRGIDPHRMGYRFRGRLMIPIRDHQGRVTAFTARQLEVTPKDDPS 237 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KY+NSPET +FHKG L+N A + ++VEG +D + Sbjct: 238 HEAKYINSPETPIFHKGNLLFNLDRARLEAK----------PDKPFVMVEGQLDAIRCWS 287 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G+ V+ GT +TE QLRLL + P++++ DGD G +AA + + L L G Sbjct: 288 VGLTTAVAPQGTGITEAQLRLLKRYEPQLIVLLDGDSAGQKAALRMLPLTLAQ---GVES 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F+ L+ EDPD R G A E+L+ L + + TP +A+ + Sbjct: 345 VFIPLTDKEDPDDIFREGGGEALEQLLERKLQPIPFACRSIAPKGERLTPQGKAKAAREV 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK----NARHRDQKGPSQ 464 I + + + + L+ Q +++ + + + Q+ P+ Sbjct: 405 FAIIQKSDSEAAKVEFVRQAAAALELDEQATLSDFRRFAGGQSNYSAGPSPSQSQQTPAP 464 Query: 465 RLMQSSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNEL--QKL 518 Q + P E LL + + + ++ D + + L +L Sbjct: 465 SPSQKTQNANSGEPSPRRAVYSVERDLLALCMLDGDLGNQVA-QIVDHEWIDTTLPEGEL 523 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 +F+ ++F+ + PE +++ L L + + + Sbjct: 524 LNFVLNEFLHDMWNGPESLNEHLESAELRTLASDIYFDA-----------KEPENPERLC 572 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +AL + + R+ +E++ +I + A +A+ L+ L + Sbjct: 573 NEALKRLL-AKFVERKTKELKLEIGRKQATNDADAL-SLLGELSALSQ 618 >gi|332884794|gb|EGK05050.1| hypothetical protein HMPREF9456_03203 [Dysgonomonas mossii DSM 22836] Length = 666 Score = 321 bits (821), Expect = 3e-85, Method: Composition-based stats. Identities = 168/680 (24%), Positives = 292/680 (42%), Gaps = 62/680 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ + +++ Q+V RR N Y CPFH+++TPSF+ + SK Sbjct: 2 IDQATIDRIIDAAQVVDVVSQFVTLKRRGIN-----YVGLCPFHEDRTPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + E+K+ + L L Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRYLAKKYNIEIQERELTDEQKQAYNERESLFIL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A + F +L + + Y ERG I+ F+LGY+ + R SL + + G+ Sbjct: 117 NDFARNHFVKTLHEHIEGKSVGLSYFKERGFREDIIQKFQLGYSLEQRDSLTQEAIKNGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 EE +++ GL I ++S DRFR R+IFP+ + G+V+AFGGR L K + KY+NSP Sbjct: 177 KEEYLVKTGLTIKSESSGALIDRFRGRVIFPVHTLSGKVVAFGGRILKKAENTGKYVNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HKG LY + A + K + LVEGY DV+S+ QAG++NVV+S Sbjct: 237 ESEIYHKGSELYGIYFAKQAITK----------ADCCYLVEGYTDVISMHQAGIENVVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ + + + + +DGD G++AA + IDL L G ++ VLL GE Sbjct: 287 SGTALTHGQIRLIHRFTEYVTILYDGDAAGIKAALRGIDL---LLEEGMKIKVVLLPDGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + K + E + + + N P +RA L + + I I D Sbjct: 344 DPDSFARKQNAESLTKYVQEHEVDFIRFKTQLLLDDAGNDPIKRANLISDIVSSIAVIPD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYG----RYWKKNARHRDQKGPSQRLMQSSLVK 473 +R Y + L + I E + + + + L Q + Sbjct: 404 NIIRSVYIKDCSILLNIDERILIQEVNKKRLAHLEKAPQPKIDPELSAINVDLSQPEAHR 463 Query: 474 GKL---SKKPSLREAALLLTLINHP-AILQEQYQ--------------------ELADIR 509 GK E A+L ++ + IL E + + Sbjct: 464 GKPIVKKTNIDKFELAILYFIVRYGMEILIEGGENNPATGDMPTTVIDWVKFDLQRDGFW 523 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + N + + + + + + + + + L Sbjct: 524 FTNPLYKTILEDAIEHSANEYFNPSRYFLAHTDAHISKIAAELVSDRYQLSKLHMKQFGE 583 Query: 570 NIVDVRQGYQQALALYK---------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 N+ + L+K + +S+Q +EI++ + + + + + IL+ Sbjct: 584 NLKKEDTPLAEEKHLWKNVPRAVTELKDAHISKQMKEIKEDLIKKQKEKDWDGAIILMQK 643 Query: 621 LHEVH--IQIHQIESQEAMI 638 L E+ +I E E +I Sbjct: 644 LKEMDEIKKILAKELGERII 663 >gi|291543226|emb|CBL16335.1| DNA primase, catalytic core [Ruminococcus sp. 18P13] Length = 581 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 155/586 (26%), Positives = 260/586 (44%), Gaps = 26/586 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P +FI L + PI +G+YV R +N Y CPFH EKTPS Sbjct: 1 MPLPDEFIYQLKLANPIDTTMGRYVHLIRSGSN-----YKCLCPFHSEKTPSCTVYTGTQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD ++F + E+++ LA G+ +P D + K++ ++ + Sbjct: 56 SFYCFGCGAGGDVITFTKQIENLDTYEAIKLLAERGGLEMPEND-LNKDGAKLKLRILEM 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +FF+ +L +DKR Y +RG+ AI+ + +GYAP + L +HL GF+ Sbjct: 115 NREAANFFYRNLLQGQDKRGLQYAVQRGLTPKAIKKYAIGYAPAAWDGLMKHLEGLGFTR 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E+++ AGL+ +D FR R++FPI RG VIAFGGR + +GE KYLNS +T Sbjct: 175 EEMLSAGLIRQNARGC--FDFFRERVMFPIIDLRGNVIAFGGRLI-EGEGPKYLNSGDTP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NL++ A N K +IL EGYMDV+++ QAG + VV++LGT Sbjct: 232 VFKKSRNLFSLNFAKNANVK------------QLILAEGYMDVIAINQAGFEQVVATLGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q R++ + + +VLC+D D G A ++AI+L G + + +DPD Sbjct: 280 ALTAEQARIMAQYATEVVLCYDSDSAGQNATHRAINL---LSEAGLHTRILKVQDAKDPD 336 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +IR +G T F+ L+ S ++ R E T + + + I+++ Sbjct: 337 EYIRKFGATRFKLLLDNSGGAINFELARCREGLDLATEQGKIDFLRRTVQVLAGIRNEME 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y I + ++ R + + + + + + Sbjct: 397 REVYLSRIAKEEEISLDILHSQVKAQLRKSYYTEKKQSWNAMMAKSSFRDELNPEAPQYQ 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E +L L HP +L E + L + + +K++ E F Sbjct: 457 REAKAEEQILAYLFLHPDLLPEVEKRLKPEHFFTSLHRKIYEVFCERMPETDTFSVSMFR 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + G + + A + + ++ + + Sbjct: 517 DACSDAEMGRITGIMAHNAEVALTADTLNDCIRLLLQAKEHEKINA 562 >gi|288924667|ref|ZP_06418604.1| DNA primase [Prevotella buccae D17] gi|288338454|gb|EFC76803.1| DNA primase [Prevotella buccae D17] Length = 580 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 144/589 (24%), Positives = 254/589 (43%), Gaps = 60/589 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R I ++ I +++ +YV +R N Y CPFH++ PSF + S+G Sbjct: 2 IDRATIDRIMDATNIVDVVSEYVSLRKRGVN-----YVGLCPFHNDSHPSFSVSPSRGIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120 +CF+C G+ ++FL L ++ ++++ LA + + + +K+E + + + Sbjct: 57 HCFTCGKGGNAVNFLMELEQMTYPDALRWLARKYNIEVRERELSDEEKKRENERESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L D Y RG I F+LG+AP+ R +L + + G+ Sbjct: 117 NEWAAKYFQQILHEDVDGMAIGMQYFRSRGFRDDIIRKFQLGFAPNQRNALSQAAVKHGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 E +I+ GL D DRF R IFP G+V+AFGGR L KG S KY+N Sbjct: 177 QAEFLIKTGLCYQRDGG-GLVDRFAGRAIFPWIGVSGKVVAFGGRVLDSRTKGVSQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SP++ ++HK + LY + A + K + +VEGY DV+S+ Q G++NVV Sbjct: 236 SPDSEVYHKERELYGIYQAKKAIAK----------EDCVYMVEGYTDVISMHQCGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+ YQ+R+L + + IVL +DGD G+ AA + D++L G + +LL Sbjct: 286 ANSGTALSNYQIRMLHRFTNNIVLLYDGDAAGIHAAMRGTDMLLSE---GMNIKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPDSF R + F+ I E + +K + P +R+E + I+ I Sbjct: 343 GNDPDSFARNHTAADFKSYIEEHQTDF-IQFKTNLLLKGVTDPIKRSEAINSIVESISLI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------- 468 DQ +R Y RL I++ + + R K + + + + Sbjct: 402 TDQIVRAAYIHDCAQRLGINEATLISQMNRFIRNGKDERQKAEMRSAGLQQAPGEPSVPG 461 Query: 469 ----SSLVKGKLSKKPSLREAALLLTLINHPA--------------------ILQEQYQE 504 ++ + + E ++ + H + Q Y + Sbjct: 462 AVESRPAIEAAKTTQEKEVERMIIQMVFRHGDELISVDANGGEGETETVTLPVAQYIYYD 521 Query: 505 LAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 L +++ N+ ++ + ++ + + ++ Sbjct: 522 LEADGLKFRNDTYNRVLTECVDHLDDETFKAENYFLRHHDPEISKLAVE 570 >gi|300173323|ref|YP_003772489.1| DNA primase [Leuconostoc gasicomitatum LMG 18811] gi|299887702|emb|CBL91670.1| DNA primase [Leuconostoc gasicomitatum LMG 18811] Length = 615 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 135/643 (20%), Positives = 254/643 (39%), Gaps = 44/643 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++IGQY D +R + CPFHD+ PS ++K Sbjct: 4 RIPESFITEVRQKVNIVDVIGQYTDLVKRGRQ-----WNGSCPFHDDHHPSLFVEENKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 + CFSC G SFL G S+ E++ LA A + + ++ + + + Sbjct: 59 FNCFSCGRSGSVFSFLMEKEGMSYPEAILSLAESADMQVDSSISAGVTQQVDSTTQVVYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + H L N Y D+R + I+ F +G+ P+ +L + ++ Sbjct: 119 LHTAAQRLYQHILLNTTSGEQALAYLHDKRQLTDDIIKHFGIGFVPED-NALLNYATEQN 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E + + L I D DRF R+++PI++ RGQV+ F GR L+ S+KY+NSP Sbjct: 178 ISREMMRTSELFISNDQG-ELRDRFSGRIVWPIKTERGQVVGFSGRALNANNSIKYMNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ F KGK LYNF + N ++ ++ +++ EG+MDV+S A V++ Sbjct: 237 ESPFFTKGKILYNFDLSKNQIR----------QTNTVMIFEGFMDVISASMAEKPVGVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT +R L ++ RI+L +DGD+ G AA ++IDL+ + V L Sbjct: 287 MGTALTRDHVRQLSHVAKRILLVYDGDEAGQNAARRSIDLI-REYAKNVDIGVVYLPDHL 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD G + ++ + +++ + + + Sbjct: 346 DPDEVRVQRGLSVLKQTLEQNIQTPVEFLVNAARVGKNLSNQVQYLAFLQEVMKTLKSAS 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--- 474 + I + T+ ++ L + G Sbjct: 406 PVEQDIQLTRIANEFGTSKHALQTQLQQSVTQKASKSQQTYSTMVEPPLYSNDYDGGLGQ 465 Query: 475 ----KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + + E AL++ +I ++ + + A + + + Q L L + + Q Sbjct: 466 KDINQSITQVEQAERALIMAMIKSSQVMVQVKET-AGFAFVHPDYQ-LLMMLTNIYQTQH 523 Query: 531 Y--FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 F + + + + + +DR D + + L + Sbjct: 524 PGDFDLAQYMDFIQKPELNQKIMAIDRSYGDIAIE-----------KAAINDYLRVIMHD 572 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + E+++ I + + K ++ L + + ++ Sbjct: 573 APIDARIRELQQAINTAKQQHDDAKLLQFMTELINIKKKQSEL 615 >gi|94988284|ref|YP_596385.1| DNA primase [Streptococcus pyogenes MGAS9429] gi|94541792|gb|ABF31841.1| DNA primase [Streptococcus pyogenes MGAS9429] Length = 604 Score = 320 bits (820), Expect = 4e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------YITSYDLSEMSEEINRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|254456804|ref|ZP_05070232.1| DNA primase [Campylobacterales bacterium GD 1] gi|207085596|gb|EDZ62880.1| DNA primase [Campylobacterales bacterium GD 1] Length = 552 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 150/594 (25%), Positives = 250/594 (42%), Gaps = 51/594 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L + I +++G YV+ + N Y A CPFHDEK+PSF + SKG Y Sbjct: 2 ITQDSIEALKARLDIVDVVGSYVELKKAGAN-----YKAPCPFHDEKSPSFVVSPSKGIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F ++ E++++LA L D K K +++ Sbjct: 57 HCFGCGAGGDSIKFTMEYEKLNYPEALEKLANNYNFTLSYTDNKHNKPRSQ------VMD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++++ + L + Y+ ERGI ++E F +GYAPDS + +++ + FS + Sbjct: 111 KLSEWYQNLLTSK--PEALSYIKERGIYESSVEKFGIGYAPDS-NATINYIKSQLFSVNE 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + + + G +S ++ RF R+ FPI S+ G ++ FGGRT+ G KY+NSPET F Sbjct: 168 AV--DMGVIGYDSGRNFARFIERITFPIHSANGSIVGFGGRTI-TGHQAKYVNSPETAFF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A L K + II+ EGY+DV+ L QAG N V++LGTAL Sbjct: 225 NKSRLLYAYHHAKQTLHK----------TKEIIITEGYLDVIMLHQAGFTNAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L LL K PRIV+ +DGD G AA KA L G V+ G DP Sbjct: 275 TQEHLPLLRKGEPRIVMAYDGDKAGRAAALKASRL---LSAGGFNGGVVIFGDGLDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + + + P ++ + + P + E + + L+ Sbjct: 332 VHKGAVEELATMFRSAKPFIEFVLEEILSLYDLRDPKAKEECMQDGIGYLKTL-SPILQE 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + RL L SQ + + + + Sbjct: 391 EYKTFLASRLGGL------------------GISPSLVRFSQAPTNKNTPLIQKNTHKDM 432 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L+ T++ HP ++ + L + ++ +++ + I +++ Sbjct: 433 WELSLIKTVLEHPELVDQMLDVLDPSLLQF--HSREFALSLQGRLDEPSLMAISIDEQIQ 490 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 E LK + N Q+A + K +S+ K Sbjct: 491 PLRDEEALKAELIAFLTKHYERELRKINTQASLSFEQKAFYIRKFRGKISKLKR 544 >gi|241765987|ref|ZP_04763910.1| DNA primase [Acidovorax delafieldii 2AN] gi|241364036|gb|EER59280.1| DNA primase [Acidovorax delafieldii 2AN] Length = 443 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 146/462 (31%), Positives = 230/462 (49%), Gaps = 26/462 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + +K Sbjct: 1 MSIPQSFIQELLSRVDVVDIVGRYVPLKKGGAN-----FMGLCPFHGEKSPSFSVSPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114 FY+CF C G+ +SFL G F+E+VQ LA G+ +P D ++KE + Q Sbjct: 56 FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPDDDISPQEKERAAAARQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + L+ + R Y RG+ + + LGYAP+ SL Sbjct: 116 ATLTDVLEKAAHAYRQHLRAS--TRAVAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVFA 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +++ ++ YDRFR+R++FPIR+ +G+ I FGGR L + KYL Sbjct: 174 HYD-DPLLEESGLVIVSEEDGGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 231 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY F A ++ + ++ EGYMDV++L Q G N Sbjct: 232 NSPETPVFHKGRELYGLFEARTAIR----------EQGYALVTEGYMDVVALAQLGFPNA 281 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T ++ L + + +V FDGD G RAA KA+D L H + F+ L Sbjct: 282 VATLGTACTPEHVQKLLRFTDAVVFSFDGDAAGRRAARKALDGALPHASDTRSIKFLFLP 341 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R G AF + I +++PL L + +E T + RA + + + + Sbjct: 342 PEHDPDSFVRAQGTDAFARCIGDAVPLSRFLVEAASEGCDLGTAEGRAHMASNARPLWSA 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 + + LR + L QL + + G + + Sbjct: 402 LPEGVLRRQVLSDLAQ-LAQLDAHDLADLWGKSAAQEAARQP 442 >gi|15674826|ref|NP_269000.1| DNA primase [Streptococcus pyogenes M1 GAS] gi|13621958|gb|AAK33721.1| putative DNA primase [Streptococcus pyogenes M1 GAS] Length = 604 Score = 320 bits (819), Expect = 5e-85, Method: Composition-based stats. Identities = 155/637 (24%), Positives = 272/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKHQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|332653407|ref|ZP_08419152.1| DNA primase [Ruminococcaceae bacterium D16] gi|332518553|gb|EGJ48156.1| DNA primase [Ruminococcaceae bacterium D16] Length = 586 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 149/614 (24%), Positives = 270/614 (43%), Gaps = 48/614 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ +L+ + +L+G+ V ++ YW CCPFH EKTPSFH + Sbjct: 1 MAWPPQFLDELIDRTDLVDLVGESVRLTKKGN-----SYWGCCPFHSEKTPSFHVVPDRK 55 Query: 61 FY----------YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110 Y ++F+ L SF E+V+ LA G+ +P Sbjct: 56 IYKCFGCGKGGG----------AINFVMELDNLSFREAVEVLAKRCGMQVP-DSGASPGA 104 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170 ++ + L+ + + A FH L + YL +RG+ + F LG+AP+ +L Sbjct: 105 KERREKLLTINKQAARAFHRWLYAPEGAQGLAYLQKRGLSKGTLTRFGLGFAPNRWDALI 164 Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + L ++G+ + +++AGL + + YDRFRNR++FPI + G VI FGGR + + Sbjct: 165 QELSKEGYDKRDLLDAGLAVSNKDG-RIYDRFRNRVMFPIIDTGGNVIGFGGRVM-DDST 222 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSP+T +++K +N++ A + +IL EGYMD +SL QAG Sbjct: 223 PKYLNSPDTPVYNKSRNVFALNIAKKS------------KAGQVILTEGYMDTISLHQAG 270 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 + V+SLGTALT +LL + P+ +L +DGD G+ AA +AI L G +V Sbjct: 271 FDSAVASLGTALTPDHAQLLSRYFPQAILAYDGDGAGVAAAQRAIPL---LEKAGLKVRV 327 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + +DPD FI+ YG+ AF++L+ +S VD + + + ++ Sbjct: 328 LRMRGAKDPDEFIKAYGRDAFQRLLDQSENQVDYRLDQIKKKYNLEDDTQKVAFLQEAAQ 387 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---GPSQRLM 467 ++ + R Y + E + + + + ++ P+ Sbjct: 388 MLSTLPSAVEREIYGGHAAQTAGVSPETMALEVKKAFQQRLRKEKKKQERRDLAPAVNQQ 447 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + +L E ++ L+ P + E L + + L +++ L Sbjct: 448 PQTRELRYENIRSALAEEGVIRLLLLDPGLAGEMGG-LTGKEFSSPLLGRVFDLLMDRAG 506 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L + + + A + ++ V +G +++ + Sbjct: 507 QHLNLSLPALAGDLTAPEMDHMARVAQKPESVANSRRSLSDYIAVIRGEGLKRSGQSEEA 566 Query: 588 FRLLSRQKEEIEKQ 601 LL+ QK+ +EK+ Sbjct: 567 L-LLAAQKKNLEKK 579 >gi|71903244|ref|YP_280047.1| DNA primase [Streptococcus pyogenes MGAS6180] gi|71802339|gb|AAX71692.1| DNA primase [Streptococcus pyogenes MGAS6180] Length = 604 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------YITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|94992160|ref|YP_600259.1| DNA primase [Streptococcus pyogenes MGAS2096] gi|94545668|gb|ABF35715.1| DNA primase [Streptococcus pyogenes MGAS2096] Length = 604 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPI 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLEILYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------YITSYDLSEMSEEINRAYYNVLEENFPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|302871328|ref|YP_003839964.1| DNA primase [Caldicellulosiruptor obsidiansis OB47] gi|302574187|gb|ADL41978.1| DNA primase [Caldicellulosiruptor obsidiansis OB47] Length = 587 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 140/625 (22%), Positives = 254/625 (40%), Gaps = 50/625 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L + I +++ YV + N + A CPFH E+TPSF+ + SK ++C Sbjct: 3 ERVVEQVLNKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPSKQIFHC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + P+ K K + +LI L Sbjct: 58 FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKIDVDFSQPQSAKDRALAKQKEELISLH 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L + Y+ +RGI + F LG+ P++ ++ Sbjct: 118 HDCFEYFQRQLYLRENIDAARYILKRGIRKETAKQFGLGFCPENNNLYELLAKKYSKEII 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + + KY+NSP+T++ Sbjct: 178 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSRAPKYMNSPDTLI 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 234 FSKSKVLYGLNIAKSS------------KEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 282 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 338 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + I ++ Sbjct: 339 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKIRFVREYFEKILMPISNEVE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + E + K Q+ + + Sbjct: 399 RQEYIKKLSQITQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + + + + +++ L+S + + E + Sbjct: 459 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMEVTYSMLLTF 513 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + ++L +L ++ ++ R L R+ E +K Sbjct: 514 VDDE---KVLSELTSFSSKGF-------ETEEAAKRAIEELKTNNNRMLWLRREMLEAQK 563 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 + G+ EK L ++ ++ Sbjct: 564 R-------GDNEKVLKLQMLIRKIK 581 >gi|332522341|ref|ZP_08398593.1| DNA primase [Streptococcus porcinus str. Jelinkova 176] gi|332313605|gb|EGJ26590.1| DNA primase [Streptococcus porcinus str. Jelinkova 176] Length = 608 Score = 320 bits (819), Expect = 6e-85, Method: Composition-based stats. Identities = 163/634 (25%), Positives = 271/634 (42%), Gaps = 48/634 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 17 AIDKEKISQIKNAVNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120 ++CF C GD F+ F+ESV LA +G+ L V P+ + K K +LI L Sbjct: 72 FHCFGCGRSGDVFKFIEEYRQVPFLESVSILAEKSGIVLDVPKPQSQSPKRKTHQELIDL 131 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ LK + YL +RG+D + IE F +G AP L + L +K +S Sbjct: 132 HHDAQKFYQAVLKTTKIGQEARNYLYQRGLDDNLIEHFNIGLAPAEPDYLYQALSKK-YS 190 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235 EE + +GL + S T YD FRNR++FP+ RGQ IAF GR +K + KY N Sbjct: 191 EETLTSSGLFNLSETSNTVYDAFRNRIMFPLADDRGQTIAFSGRIWTKEDQDKKLAKYKN 250 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T+LF+K LY+ A + K + L+EG+MDV++ +AG +N + Sbjct: 251 SRATLLFNKSYELYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYKAGCENAI 300 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT+ + L L+ +++L +DGDD G A K+IDL+ + VL+ Sbjct: 301 ASMGTALTQEHINHLKPLTKKVILTYDGDDAGQNAIAKSIDLLSDFQVE-----IVLIPN 355 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F++ Y L+ S + R + + + + + I Sbjct: 356 KMDPDEFVQKYSAEELANLLEHSRISDVEFFIRYLKPENTDNLQAQIAYVEEIARIIAQA 415 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R + + R + +L K Sbjct: 416 PSITAQNSYINKVADSLPDFDYLQVEQTVNTYRVQDR--QRRQVQIAPSEAPVMTLPVTK 473 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL LI+H +L E ++ D +D LQ+L+ + E Sbjct: 474 NITALVRTENQLLHRLIHHEYLLNE-FRLKDDFYFDTPALQELF-LVLKANGEVSPIDLA 531 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + + + L + L +V + + + + R R + +Q Sbjct: 532 NLSEDVNQAYYRVLEEHLPEEVTENEIIDILAKRDK-------------LLRERDIHKQ- 577 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KQ+ + + G+ + ++ L ++ Sbjct: 578 ---GKQVRESSNNGDHQLALEVLENLIAQKRKME 608 >gi|311105373|ref|YP_003978226.1| DNA primase 1 [Achromobacter xylosoxidans A8] gi|310760062|gb|ADP15511.1| DNA primase 1 [Achromobacter xylosoxidans A8] Length = 684 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 142/465 (30%), Positives = 232/465 (49%), Gaps = 27/465 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDIVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF ++V+ LAA AG+ +P P+ +++ + Sbjct: 57 HCFGCGAHGSAITFLMEHTGASFPDAVRTLAASAGMTVPEENRSPRQQQESARRKAEESR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + YL +RG+ F LG++ R+ L + Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++E+GL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPVLVESGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG LY + A ++ +I+VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTATTPDHVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + +++ L L + N + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRACLGDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 + LR + + +Q ++ + A G Sbjct: 401 ECALRVQIEREMAKLVQLTPEEMAQVLAQQPAKPFAPAPKSGTAG 445 >gi|312134620|ref|YP_004001958.1| DNA primase [Caldicellulosiruptor owensensis OL] gi|311774671|gb|ADQ04158.1| DNA primase [Caldicellulosiruptor owensensis OL] Length = 587 Score = 319 bits (818), Expect = 6e-85, Method: Composition-based stats. Identities = 135/625 (21%), Positives = 257/625 (41%), Gaps = 50/625 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L I I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 3 ERVVEQVLNKIDIVDVVSMYVPLKKVGAN-----FRALCPFHQERTPSFYVSPAKQIFHC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 58 FGCGVGGNVIHFIMRIENLTFTEALKVLAQRAKIDVDFSQSQSAKDRALAKQKEELISLH 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L + Y+ +RGI + F LG+ P++ ++ Sbjct: 118 HDCFEYFQRQLYLRENIDAARYILKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + ++ KY+NSP+T++ Sbjct: 178 DKSG----IFIERNGKNYCRFERRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 234 FSKSKVLYGLNIAKSS------------KENDFVVVEGYMDVISLHQEGIDNVVGVLGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 282 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 338 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + I ++ Sbjct: 339 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFRFVREYFEKVLMPISNEVE 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + E + K Q+ + + Sbjct: 399 RQEYIKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 458 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + + + + +++ L+S + + E + Sbjct: 459 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 513 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + ++L +L + I +++ + + +++ Sbjct: 514 VDDE---KVLSELTSFSSKGFETEEAAKRAIEELKTN--------------NSRMLWLKR 556 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 ++ + +G+ EK L ++ ++ Sbjct: 557 EMLEAQKRGDNEKVLKLQMLIRKIK 581 >gi|218441997|ref|YP_002380326.1| DNA primase [Cyanothece sp. PCC 7424] gi|218174725|gb|ACK73458.1| DNA primase [Cyanothece sp. PCC 7424] Length = 634 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 158/642 (24%), Positives = 281/642 (43%), Gaps = 38/642 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++++ + I ++I +YV +R CPFH+EK+PSF+ + K Y Sbjct: 6 LDPQTLEEIKQRVDIYDVISEYVVLHKRGK-----SLVGLCPFHNEKSPSFNVSADKQLY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLI 118 +CF C G+ ++FL L SF E LA +PL ++P+ +K + + L Sbjct: 61 HCFGCGAGGNAITFLMELRKQSFYEVALDLARRYQIPLKTLNPEEHQKLQRQLSLKEQLY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQK 176 ++ VA F+ H+L+ + YL +R ++ I F+LGYAP +L + + QK Sbjct: 121 EIVAVAVSFYQHALRQPEGEHALNYLKQKRHLNDEIITQFQLGYAPAGWETLYRYLVEQK 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + +AGL+ +++ YD FR+R++ PI S+G+ IAFG RTL E KYLNS Sbjct: 181 RYPVALVEQAGLIKPRKSASGHYDTFRDRIMIPIHDSQGRAIAFGSRTLGTDEP-KYLNS 239 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KGK L+ A + +I+VEGY D ++L G+ N V+ Sbjct: 240 PETPLFDKGKTLFALDKATKRI----------TEEDRVIVVEGYFDAIALHSVGITNGVA 289 Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLL 353 SLGTA + QL+ L + + +I+ FD D G++A +AI+ + + G ++ + L Sbjct: 290 SLGTAFSGVQLKQLLRYTDSKQIIFNFDSDPAGIKATERAINEISSLVYSGQIQLRILNL 349 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 G+D D F+ F LI + + ++ + D + + Sbjct: 350 PDGKDADEFLNSSAGAAEKFRHLIETAPLWFEWQIEQLLSKHNLKEADHFQIVVQTMVKL 409 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 ++ +++ R YY D L Q + I + K + R K S++ QS+ Sbjct: 410 LSQLENIPQRIYYIHYCADLLSQGDKGRIRIYEDSLSKQLKKSNFRIVK-DSKKTTQSND 468 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELA--DIRYDNNELQKLWSFLF---SDF 526 V + + EA LL ++ P E ++ +I + + + LW + DF Sbjct: 469 VISEEKNRLEYEEALLLKIYLHCPHHRAEIQAQIEEKEIVFSVSYHRFLWQQILTLEDDF 528 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + +VR E +I ++ + Sbjct: 529 LSNPEPDNLSNRLLSLLQDKLLSFPEQAEKVRYLFYLDEIGEKDIAFASTNLEKVFLSLE 588 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEA----EKTAILISILHEV 624 + + ++ IE Q+ + TA + ++ + + L E+ Sbjct: 589 FVKYTNYKRYCIE-QLDKATAFKDQLFWSQELSEVSQKLQEL 629 >gi|320095901|ref|ZP_08027525.1| DNA primase [Actinomyces sp. oral taxon 178 str. F0338] gi|319977167|gb|EFW08886.1| DNA primase [Actinomyces sp. oral taxon 178 str. F0338] Length = 480 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 124/495 (25%), Positives = 202/495 (40%), Gaps = 42/495 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ + I +++G +V G CPFHDE+TPSF+ + G + Sbjct: 5 IRKDDIEAVRNAARIEDVVGDHVTLKPAG----IGSLKGLCPFHDERTPSFNVRPAVGMF 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 +CF C GD +SF+ + F E+V+ LAA G+ L + + + + L+ Sbjct: 61 HCFGCGESGDVISFVQKIDHLPFAEAVEALAAKTGITLHYEEGGARVRTEEPGRRGRLVD 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A +F+ L + + +L RG F +GYAP S +L HLR +G++ Sbjct: 121 AHRIAEEFYQSQLTTPQAAKGREFLAGRGFTQAMCAHFGVGYAPRSWDALIRHLRSRGYT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238 +++I AGL + YDRFR RL++PIR G + FG R L +S KYLN+PE Sbjct: 181 DQEIQTAGLASQ--GARGIYDRFRGRLVWPIRDITGATVGFGARRLDDDEDSPKYLNTPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + +++VEGY DV++ AGV V++ Sbjct: 239 TPIYKKSQLLYGLDLAKKAI----------TQGHRVVIVEGYTDVMAAHVAGVDCAVATC 288 Query: 299 GTALTEYQLRLLWK-------------------LSPRIVLCFDGDDPGLRAAYKAIDLVL 339 GTA ++++ + +V FDGD G +AA +A Sbjct: 289 GTAFGPEHVKIIRRLLGDSADPAAGVVLASGRAHGSEVVFTFDGDSAGRKAALRAYGEDQ 348 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 + + G+DP G A L+ PL + + + + Sbjct: 349 NFAA---QTFVAVAPGGQDPCELRLSQGDQAVVDLVRSRTPLFEFAIRSVLSGVDLRSAE 405 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 R + HIKD+ LR Y++ + L + R A R Sbjct: 406 GRVAGLRSSARIVAHIKDRALRREYARQLAGWLGMDTRTVDQAVHAASRRGPDGAPARPG 465 Query: 460 KGPSQRLMQSSLVKG 474 + +G Sbjct: 466 APTMAGAGRPGPSQG 480 >gi|198284074|ref|YP_002220395.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218668044|ref|YP_002426729.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248595|gb|ACH84188.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520257|gb|ACK80843.1| DNA primase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 583 Score = 319 bits (818), Expect = 7e-85, Method: Composition-based stats. Identities = 175/631 (27%), Positives = 272/631 (43%), Gaps = 58/631 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N+ FI LL H + LI V ++ D+WACCPFH EK+PSF + K Sbjct: 3 NFSPAFIDALLEHCDLVRLIDSRVPLKKKGR-----DFWACCPFHQEKSPSFSVSADKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF CH G+ + FL A SF E+V+ LA GV LP P E++ L ++ Sbjct: 58 YYCFGCHAHGNAIGFLMAHDRLSFPEAVKTLADEVGVALPEDGPAGEQESLR--PLRAIL 115 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A + +L + YL RG+ I F+LGYAP + L + L ++ + Sbjct: 116 EKAIGVYRSALAEHPPAQE--YLRGRGLSEEIIGRFELGYAPSAAGFLSQKLGREPSLRQ 173 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++ AGL + G + YDRFR R+IFPIR RGQ + GGR+L G KYLNSPE+ L Sbjct: 174 QLLGAGL-VSGREDGSVYDRFRGRVIFPIRDGRGQAVGLGGRSL-DGHEPKYLNSPESAL 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HKG+ LY A ++++ R ++LVEGY+DV++L QAG+ V++ GTA Sbjct: 232 YHKGRVLYGLHQAREGMRRAGR----------VLLVEGYLDVITLHQAGIDYAVAASGTA 281 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L + Q+ +L++ + ++LCFDGD G AA++A+ HL G + + L G+DPDS Sbjct: 282 LGDSQMEMLFRAAHEVLLCFDGDTAGRNAAWRAVQTAPEHLRAGRLLRLLFLPDGQDPDS 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 +R G FE ++ + P +D + + DE+A ++ + + D LR Sbjct: 342 LVREQGGAVFESMLPTARPAIDFFLEELQRRHNLAAEDEKALFLHAARDFLKRVSDPVLR 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y Q R+Q L R +K + Sbjct: 402 EVYEQ----RVQTLCGLAPVARRATSRAPRKATFSAAGGRSLFKTA-------------- 443 Query: 482 LREAALLLTLINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L L+N P Q ++L +D + + ++ + + E+ Sbjct: 444 ------LRLLLNFPEDPAWQALDRDLLPFLFDRDPMAEILAEALDILANMTHLSSHELFA 497 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 +L E L I Q LA R +SR Sbjct: 498 KLSVLKHAEACYALVMSDSGDEEGQVLMRLEISGCVARVNQRLAA-ARSHFISR------ 550 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 G + + + + + + + Sbjct: 551 ----AADQGGLSALSEQERAEVVRLSRRDRR 577 >gi|294055047|ref|YP_003548705.1| DNA primase [Coraliomargarita akajimensis DSM 45221] gi|293614380|gb|ADE54535.1| DNA primase [Coraliomargarita akajimensis DSM 45221] Length = 609 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 140/641 (21%), Positives = 251/641 (39%), Gaps = 56/641 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + + + +++ YV R + PF EKTPSF+ + +GF Sbjct: 3 RISQRTIDTIKQQVNLVDVVSPYVQLKRAGR-----SFKGLSPFTQEKTPSFYVHPDRGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRL 120 Y CFS GD +F+ + F E+++ LA + L ++E ++ + L Sbjct: 58 YKCFSTGEGGDCFTFVMKVENLEFGEAIEFLAKKFNIALEYEAGGPSREEVSLRKQIFEL 117 Query: 121 IEVATDFFHHS-LKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E+A +FHH LK + Y E RG E K+GYAP + +L + +++ Sbjct: 118 HELAAAWFHHEFLKGNEAAPVRRYWTEQRGFSIETAEAVKIGYAPAASNALAQLCQKRSI 177 Query: 179 SEEKIIEAGLLIDG---DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG------E 229 S + ++GL + A RFR RL+ PIR +G+V+AF R L + Sbjct: 178 SIAAMHQSGLFFARENERDYARFRSRFRGRLMVPIRDVQGRVVAFTARQLEQTPDDDPAR 237 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KY+NSPET +FHKG+ L+ A +L+ +LVEG +D + Sbjct: 238 EAKYVNSPETSIFHKGRILFGMDHARTHLK----------EGDSFLLVEGQLDAIRCWSV 287 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G+ V+ GTALTE Q+ L+ + P V C DGD G +AA + I + G Sbjct: 288 GLHTAVAPQGTALTEDQVHLMRRYEPASVECLMDGDAAGRKAALRYIPIA---FKAGMEF 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 F++L DPD +R G + + ++ +++ + + + E+ ++ Sbjct: 345 KFLVLPEKADPDDLLRSEGAAGLDPIRAQAQSAIELAVRAGLPDGRAPSTQEKTAALRNI 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + H+ + R Y Q + L Q + + R + P Sbjct: 405 YELLQHVPSEVAREDYIQTVARILSVDSQAALKDFKQISRQRQGPQNTGPAPAP------ 458 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFV 527 + + LL L++ P Q L + + + +L + + +++ Sbjct: 459 ----ETSKDPLLTHATWELLWLLLHFPEYGLIISQALDYDWINTSSNEGQLLARIIAEYR 514 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E L +LL ++ + + + + QA Sbjct: 515 EGLIEDGTNFENLLETVEDRKLLAEIHTRNLEC------------EFPKVQIQACLNTLY 562 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 L+ +K+E+E I + L+ + + Q+ Sbjct: 563 KNYLTTRKKELEHLI--ANNDSSSPDQLRLMREVKSIRNQL 601 >gi|313890558|ref|ZP_07824186.1| DNA primase [Streptococcus pseudoporcinus SPIN 20026] gi|313121075|gb|EFR44186.1| DNA primase [Streptococcus pseudoporcinus SPIN 20026] Length = 602 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 162/635 (25%), Positives = 274/635 (43%), Gaps = 50/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEKISQIKNAVNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120 ++CF C GD F+ F+ESV LA +G+ L V P+ + K+K +LI L Sbjct: 66 FHCFGCGRSGDVFKFIEEYRQVPFLESVSILAEKSGIALDVPKPQNQSPKKKSHQELIDL 125 Query: 121 IEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F+ LK + YL +RG+D + IE F +G AP L + L +K + Sbjct: 126 HQDAQKFYQAVLKTTKIGQEARNYLYQRGLDDNLIEHFNIGLAPAEPNYLYQALSKK-YP 184 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLN 235 EE + +GL ++S T YD FRNR++FP+ RGQ IAF GR +K + KY N Sbjct: 185 EEILTTSGLFNLSESSNTLYDAFRNRIMFPLTDDRGQTIAFSGRIWTKEDQGNKLAKYKN 244 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S T+LF+K Y+ A + K + L+EG+MDV++ +AG +N + Sbjct: 245 SRATLLFNKSYEFYHLDKAKPVIAKK----------HEVFLMEGFMDVIAAYKAGCENAI 294 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GTALT+ + L L+ +++L +DGDD G A K+IDL+ + VL+ Sbjct: 295 ASMGTALTQEHINHLKPLTKKVILTYDGDDAGQNAIAKSIDLLSDFQVE-----IVLIPN 349 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD F++ + L+ S + R + + + + + I Sbjct: 350 KMDPDEFVQKHSAEELAHLLEHSRISDVEFFIRYLKPENTDNLQAQIAYVEEIARIIAKA 409 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + Y + D L + + R + + R + +L K Sbjct: 410 PSITAQNSYIHKVADSLPDFDYLQVEQTVNTYRVQDR--QRRQVQITPSEAPIMTLPVTK 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E LL LI+H +L E ++ + +D LQ+L+ + E Sbjct: 468 NITALVRTENQLLHRLIHHEYLLNE-FRLKDNFYFDTPALQELF-LVLKANGEISPLDLA 525 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQ 594 + + + + + L + L +V ++ + L KR +LL R Sbjct: 526 NLSEDVNQAYYRVLEEHLPEEVTESEISDI------------------LRKRDKLLRERD 567 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KQ+ + + G+ + ++ L ++ Sbjct: 568 IHKQGKQVRESSNNGDHQLALEVLENLIAQKRKME 602 >gi|71910412|ref|YP_281962.1| DNA primase [Streptococcus pyogenes MGAS5005] gi|71853194|gb|AAZ51217.1| DNA primase [Streptococcus pyogenes MGAS5005] Length = 604 Score = 319 bits (817), Expect = 9e-85, Method: Composition-based stats. Identities = 155/637 (24%), Positives = 272/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNIPPSQAVLASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFHLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + L+ +L Sbjct: 410 QSPSITAQHSYINKISDLLPNFDYFQVEQSVNALRIQDRQKHQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 604 >gi|58584454|ref|YP_198027.1| DNA primase, DnaG [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418770|gb|AAW70785.1| DNA primase, DnaG [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 586 Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats. Identities = 173/636 (27%), Positives = 287/636 (45%), Gaps = 66/636 (10%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D+I + + +S+++G+ V +R + CPFH EKTPSF +++KG Y+CF Sbjct: 2 DYIDIIKSRLLLSDIVGKKVRLTKRG-----DSFVGFCPFHSEKTPSFLVSNTKGSYHCF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD +F+S G SF E+++RLA++ GV LP K +L + +A Sbjct: 57 GCSAHGDVFNFISQTEGLSFKEALERLASVVGVELPKTLNLA----KENGELFSTLNLAA 112 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F ++ + YL +R I I+ FK+GYAP S L+E+L G ++ +I+ Sbjct: 113 SWFVQK-----NQGIIAYLKQRKISPKIIDKFKVGYAPSS--GLKEYLNSLGIEDKILID 165 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 GL+ S D F NRLIFPI + G+VI FGGR LS + KYLNSPE+ LF K Sbjct: 166 VGLINK-----NSRDYFCNRLIFPIYNIAGKVIGFGGRALSSKQQPKYLNSPESQLFKKR 220 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +NLY AL+ + K + +VEGYMDV++L Q G+ N+V+ LGTA++ Sbjct: 221 ENLYGLNFALSEIHKK----------QHVFVVEGYMDVIALHQTGISNIVAPLGTAISAE 270 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR- 364 Q++ LWK + I +C DGD G AA + +LVL L PG + FV L +DP Sbjct: 271 QIKSLWKFAKEISICMDGDSAGRNAAIRVAELVLPILEPGYTLKFVTLPTDKDPYDVCNE 330 Query: 365 -CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQ 418 + K + S L +N P++ + LE +N I + Sbjct: 331 LEHKKETVLSALDHSTKLHSEYLWHYIIGSNLQNYEKLAPEKYSILERKFMEYVNAIGNS 390 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 +R YY D+ +E + N + R K L++ + + Sbjct: 391 SIRRYYRDYFYDK--------ASELRNSFKKQVFNNKTRATKSEYLYNKSPELIEAEQN- 441 Query: 479 KPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 +A +L + P IL +++ + + N ++++L + + E Sbjct: 442 -----QAIILRITLEFPEILNHPIYFEQFSHFEFTNVKIKRLQQHIINVANNGSELNKEV 496 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q L + +K + + ++ N + + L +L R++ Sbjct: 497 LLQELEQFNVDGTIKLIFEKTSILN-----SQLNNGKSAKTVWNNIVLRGELNVLQRER- 550 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 IE ++ G+ LI + ++ I +++ Sbjct: 551 -IEARLG-----GDFGLEERLIEQIEQIESNIREMQ 580 >gi|255019636|ref|ZP_05291716.1| DNA primase [Acidithiobacillus caldus ATCC 51756] gi|254970939|gb|EET28421.1| DNA primase [Acidithiobacillus caldus ATCC 51756] Length = 586 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 178/643 (27%), Positives = 282/643 (43%), Gaps = 67/643 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + FI +L I LI V ++ DYW+CCPFH EK+PSF + K Sbjct: 3 RFSQAFIDTVLARSDILRLIDSRVSLKKKGK-----DYWSCCPFHQEKSPSFSVSPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRL 120 YYCF CH G+ + FL A SF+E+V LA AG+PLP P+ ++ + Sbjct: 58 YYCFGCHAHGNAIGFLMAYERLSFVEAVSLLAEEAGIPLPQEGRPEGPDPRPVRA----I 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A + +L + + Y +RG+ F LG+APD L L Q Sbjct: 114 LEAAEKLYREALHSHPPAQA--YWRQRGLSEATWNHFGLGFAPDQAQFLTSRLGQNSAQR 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E ++ AGL + + YDRFR R+IFP+R RGQ+ F GR+ + G KYLNSPETI Sbjct: 172 ELLVAAGL-VSRRDDGRYYDRFRARVIFPLRDGRGQLCGFAGRS-TDGREPKYLNSPETI 229 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+HKG+ LY A +++ R LVEGY+DV++L QAG+ V++ GT Sbjct: 230 LYHKGQMLYGLDLAREGIRRRRRVV----------LVEGYLDVITLHQAGLDFAVAASGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ QL +LW+ + IVLCFDGD G AA++A+ L L PG + + L GEDPD Sbjct: 280 ALTDKQLEILWRTAGEIVLCFDGDAAGRAAAWRALQLAPARLRPGRLLRVLFLPEGEDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S +R G AFE+++ ++ P +D E DE+A+ + + ++D L Sbjct: 340 SLVRKGGAAAFEEILAQARPALDHHLSVLRERYDLKKADEKAQFLGEARAFLAQVQDADL 399 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y Q + + T + K + ++ L Q++ Sbjct: 400 RAVYGQRLEEIAGVAVVLPKTSAQAFPESAPKPVPVKAKRPGRPSLCQAA---------- 449 Query: 481 SLREAALLLTLINHPAILQEQYQELAD---IRYDNNE-LQKLWSFLFSDFVEQKYFLPEE 536 L L+ P + +Q+L + + + ++ + E + + Sbjct: 450 -------LRLLLQRP--VDPHWQQLERRLLVYLRDEDTHAEVLADGLEILSESTHIGSQA 500 Query: 537 IHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + RL R L ++ A + + + + +A L+ Q Sbjct: 501 LFARLAARWDLDALFRE----------QFAPSVGSDEGSQSEVRDCVAR------LNLQL 544 Query: 596 EEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + + G A + L + + + +E+ Sbjct: 545 TQARIRFIGRTADRAGLAALSPEERQELLRITKG-RRSKGEES 586 >gi|298384873|ref|ZP_06994432.1| DNA primase [Bacteroides sp. 1_1_14] gi|298262017|gb|EFI04882.1| DNA primase [Bacteroides sp. 1_1_14] Length = 730 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH+EKTPSF + +KG Sbjct: 2 IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + + + Sbjct: 57 KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ G+ + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F+ I E + P +RAEL ++ I+ I Sbjct: 343 GDDPDSFARKHNSEEFQAFIHEHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + +R Y + L+ + + E + + A S +S Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462 Query: 476 LSKK 479 Sbjct: 463 SGTP 466 >gi|253570313|ref|ZP_04847722.1| DNA primase [Bacteroides sp. 1_1_6] gi|251840694|gb|EES68776.1| DNA primase [Bacteroides sp. 1_1_6] Length = 730 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH+EKTPSF + +KG Sbjct: 2 IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + + + Sbjct: 57 KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ G+ + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F+ I E + P +RAEL ++ I+ I Sbjct: 343 GDDPDSFARKHNSEEFQAFIHEHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + +R Y + L+ + + E + + A S +S Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462 Query: 476 LSKK 479 Sbjct: 463 SGTP 466 >gi|309807566|ref|ZP_07701518.1| DNA primase [Lactobacillus iners LactinV 01V1-a] gi|308169172|gb|EFO71238.1| DNA primase [Lactobacillus iners LactinV 01V1-a] Length = 501 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 233/497 (46%), Gaps = 26/497 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYS 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NVENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNINLGIVSLPEHLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + ++ + L +R ++ + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAAITSTEFLLQRMSKKYNLFNDRDKLDFINESIALIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPTDEVTPKQLDNVHDS 463 Query: 478 KKPSLREAALLLTLINH 494 + LL I++ Sbjct: 464 SVSFTEQKRLLFLFIHN 480 >gi|29349340|ref|NP_812843.1| DNA primase [Bacteroides thetaiotaomicron VPI-5482] gi|29341248|gb|AAO79037.1| DNA primase [Bacteroides thetaiotaomicron VPI-5482] Length = 730 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 141/484 (29%), Positives = 232/484 (47%), Gaps = 26/484 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH+EKTPSF + +KG Sbjct: 2 IDQVTIDRILDAAQIVDVVSEFVTLRKRGVN-----YVGLCPFHNEKTPSFSVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + + + Sbjct: 57 KCFSCGKGGNSVHFIMEHEQMSYYEALKYLAKKYNIEIKERELTNEEKQAQTTRESMFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y +RG IE F+LGY +S ++ + +KG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGLAYFRQRGFRDDIIEKFQLGYCTESHDAMSQEALRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ G+ + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEFLVKTGICYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLSTATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRLIHRFTNNITVLYDGDVAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + F+ I E + P +RAEL ++ I+ I Sbjct: 343 GDDPDSFARKHNSEEFQAFIREHEKDFIRFKTDLLMEDAGRDPIKRAELISNIVRSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + +R Y + L+ + + E + + A S +S Sbjct: 403 PEAIIRDVYIKECSQHLRIEEKLLVAEVAKLREAQAEKANRPSYNHSSSTTGDTSGTAAA 462 Query: 476 LSKK 479 Sbjct: 463 SGTP 466 >gi|28896248|ref|NP_802598.1| DNA primase [Streptococcus pyogenes SSI-1] gi|28811499|dbj|BAC64431.1| putative DNA primase [Streptococcus pyogenes SSI-1] Length = 604 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 273/637 (42%), Gaps = 52/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R L+ +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPM 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 468 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 520 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 567 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG + ++ ++ Sbjct: 568 RDLHKQGKKVRESSNKGYHQAALEVLEHFIAQKRKME 604 >gi|317153215|ref|YP_004121263.1| DNA primase [Desulfovibrio aespoeensis Aspo-2] gi|316943466|gb|ADU62517.1| DNA primase [Desulfovibrio aespoeensis Aspo-2] Length = 590 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 170/622 (27%), Positives = 264/622 (42%), Gaps = 44/622 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 R ++ + I I++++ +YVD V G + CPFH E PS ND +GF+Y Sbjct: 2 DRSAVEAVKARISIADIVRRYVDLK-----PVSGRWMGACPFHQETKPSMSVNDDEGFFY 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121 CF C GD F + + G F E+++ LAA AGV L V DP +++ L + Sbjct: 57 CFGCQASGDVFDFYARINGLEFREALEHLAAEAGVELGNVPHDPHAAERKARIAMLFDMH 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A +F +L YL +RG+ I F LGY+PD L HL+ KG + E Sbjct: 117 DEANAWFQRNLTMEAGAVAREYLTKRGMTPDVIRKFGLGYSPDDWRGLESHLKGKGRTPE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +EAGLL + YDRFR RLIFPI++ G+VIAFGGR + KYLNS +T + Sbjct: 177 LGVEAGLLSQNEKGNI-YDRFRGRLIFPIQNLSGRVIAFGGRII-TDGEPKYLNSSDTPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 + KG +LY A + + +S R +L EGYMDV+SL Q G + LGTA Sbjct: 235 YKKGDHLYGLNLARSTMTRSKRA----------LLTEGYMDVISLHQFGYTDACGVLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT Q++ L R+ L FDGD G +AA K+ ++L G VL+ +GED DS Sbjct: 285 LTPEQVKRLAGFCSRVDLVFDGDGAGRKAALKSSRMILLQ---GVACRVVLMPQGEDVDS 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ G FE + ++ +D + A+ + + D LR Sbjct: 342 LLQTKGAEGFEACMEQAPDGLDFCMTTLRNEFAPREIMAWAKG------FLTDLPDASLR 395 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +Y I L + + G R ++G Q K Sbjct: 396 AFYLPRIAGGLGLSEADFRRDTGVSGPPRNTPGRRPPERGSHQAQDGQGRQNLPAVGKED 455 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + L I +P +Q + LW L + +I +L Sbjct: 456 HDDKYFLRFAIQYPDYVQALAERGFAHVLATQWAGALWEKLVNAQH-------GQILSQL 508 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 ++ K + R +A T ++D + +A ++ + ++++ Sbjct: 509 NDQE-----KSFYFKCRAEVRQTALTGRELLDEWEHICNKIAFAQQ----KEDRRQLKEA 559 Query: 602 IAQVTAKGEAEKTAILISILHE 623 + Q G+ ++ L E Sbjct: 560 LNQAQLSGDRQRINECFRALEE 581 >gi|150003051|ref|YP_001297795.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|254882334|ref|ZP_05255044.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|294775922|ref|ZP_06741421.1| DNA primase [Bacteroides vulgatus PC510] gi|319640614|ref|ZP_07995333.1| DNA primase [Bacteroides sp. 3_1_40A] gi|149931475|gb|ABR38173.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|254835127|gb|EET15436.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|294450291|gb|EFG18792.1| DNA primase [Bacteroides vulgatus PC510] gi|317387784|gb|EFV68644.1| DNA primase [Bacteroides sp. 3_1_40A] Length = 691 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 162/708 (22%), Positives = 300/708 (42%), Gaps = 99/708 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N + CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIVDVVSEFVTLRKRGVN-----FVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G+ + F+ ++ E+++ LA + + + E+K+ I+ L + Sbjct: 57 KCFACGKGGNAVHFVMEHEQMTYPEALRWLAKKYNIEIKERELTDEEKQVQNIRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+F + L N D + Y +RGI ++ F+LGY+ + +L + +KG+ Sbjct: 117 NEFARDYFQNILYNHADGKAIAMSYFRQRGIRDDIVKKFQLGYSTTAPDALAQEAMRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ GL + ++ + DRF R+IFP + G+V+ FGGR L KG + KY+N Sbjct: 177 KKEFLLKTGLCYEKEDG-SLRDRFWGRVIFPWFNISGKVLGFGGRVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F K K LY + A + K + + +VEGY DV+++ Q G++NVV Sbjct: 236 SPESEIFSKRKELYGIYQAKAAIVK----------ADCVYMVEGYTDVIAMHQCGLENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+E Q+RLL + + I L +DGD+ G++A+ + ID+ L G + +LL Sbjct: 286 ANSGTALSEQQIRLLHRFTSNITLLYDGDEAGIKASIRGIDM---LLAEGMNIKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F K I + + P +RA L + I I Sbjct: 343 GDDPDSFSRKHNATEFRKYIDDHEENFIRFKTNLLLKDAQRDPIKRAGLISDMARSIGLI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--- 472 D+ +RY L Q + E + N + +K SL Sbjct: 403 PDKVIRYTCLTECATLLNVNEQIILDEIKKHLLQRDDNYLEQIKKEKDASATTGSLPPAD 462 Query: 473 -----------------------------------------KGKLSKKPSLREAALLLTL 491 +G+ ++E LL TL Sbjct: 463 TPFPAGSIPPADMPPLGVDDNVPPPFPPAEAEAGYQSYIPQEGREKYVFYVKEQLLLQTL 522 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 I H +++ +L ++++ N +K+ + E Sbjct: 523 IRHGEKVMCYVETEENTETPLTVIEYISMDLKQDELQFHNPLHRKILAE-----AEAHLH 577 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RF 588 P +R + +L + + + + + + + L ++ + Sbjct: 578 DPNFTAERYFLAHPDPTISKLAADMINDRYQLSKSNSQAMVKDEERLHELVPHQLIDFKL 637 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +L + + + + A+K +++ E+ ++ +I ++ A Sbjct: 638 AILEEDMKYTLQALNKPEVVANADKCLEVMAHFKEL-SELQKIMAKRA 684 >gi|254994013|ref|ZP_05276203.1| DNA primase [Listeria monocytogenes FSL J2-064] Length = 445 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 135/461 (29%), Positives = 222/461 (48%), Gaps = 26/461 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + ++ +H+ L YL ERG+ + F++G+AP+ ++ L Sbjct: 118 KMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTFQIGFAPNHHATITAFLE 177 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++G + AGLL + D+ DRFRNR++FPI + RGQ+IAF GR + + KYL Sbjct: 178 KRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYL 236 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +F+K + L++F A ++K I L+EG+MDV+S +AGVQN Sbjct: 237 NSPETPVFNKRRILFHFSEARQAIRKQ----------EEITLMEGFMDVISAEEAGVQNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GT+LTE L+ +L+ R ++C+DGD G+ AAYKA L++ + L Sbjct: 287 VASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLP 344 Query: 355 RGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DPD FIR G F++ + + R+ ++ I Sbjct: 345 AGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIA 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 + R Y + + D + + + + +K+ Sbjct: 405 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSR 445 >gi|15639483|ref|NP_218933.1| DNA primase (dnaG) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025723|ref|YP_001933495.1| DNA primase [Treponema pallidum subsp. pallidum SS14] gi|9910815|sp|O83505|PRIM_TREPA RecName: Full=DNA primase gi|3322781|gb|AAC65479.1| DNA primase (dnaG) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018298|gb|ACD70916.1| DNA primase [Treponema pallidum subsp. pallidum SS14] gi|291059870|gb|ADD72605.1| DNA primase [Treponema pallidum subsp. pallidum str. Chicago] Length = 605 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 156/638 (24%), Positives = 256/638 (40%), Gaps = 44/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + + + +L+G Y +RR D+W CPFH E+TPSFH K Sbjct: 3 RISAHVIDAIADRVDLVSLVGNYTHLERRG-----DDWWGRCPFHHERTPSFHVVPDKKM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 YYCF C V G + F + F E+ RLA AG+ + D L Sbjct: 58 YYCFGCGVGGSTIKFFMEIEKIDFHEAAVRLAKRAGIEMSFEDGVHAPSAHASFTMQLCE 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + + FHH L A+ R YL R + +I FKLGYAP L + LR KG+ Sbjct: 118 VYQRIAETFHHVLMHTAQGARARAYLASRKVTDDSIRTFKLGYAPPDPVWLFQFLRHKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S E + +GL F +R+++PI GQVIAFG R L KYLN+ + Sbjct: 178 SPEFLARSGLFAKKSER---IAVFSDRIMYPIADRYGQVIAFGARAL-GTAPAKYLNTAD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + KG++L+ F AL+ ++K+ I+ EGYMDV++ QA + V+ L Sbjct: 234 MPQYKKGEHLFAFHCALSQMRKTRAA----------IICEGYMDVIAFHQAQLTYAVAPL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 G LT+ Q RL+ RI +CFD D G A YKAI L G V V L+ G D Sbjct: 284 GALLTKSQARLMRSFVDRIYMCFDADGAGRAATYKAILLCRSL---GFEVRIVELNGGTD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P G+ A K + S L + S D+ + L ++ + Sbjct: 341 PAECACIEGEDALRKSVERSTTDAQYLIRCARHEHSHLGADDTSRAVSFLFPYLSVLDSA 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Q I Q + Y RY + + + +++ + + Sbjct: 401 IQREQVMQDIAMAFGIRIQAVHAD---YLRYVSRTTQKGTTGNCVLSVQGTAIQVKEPAT 457 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + L+L ++ +P + + + + +++ ++L+ L + P + Sbjct: 458 GVRTAQLRLVLAVVANPELFELLRESVCADDFEDPMAKELFIILEECYRADTRASPHVLS 517 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +L + V +A + + VR G R L +++E + Sbjct: 518 CCTTD--------ELRKLVSEAIVCGEFSCNAPQIVRDGV-----ALVRRNRLLKERESL 564 Query: 599 EKQIAQVTAKGEAEK---TAILISILHEVHIQIHQIES 633 ++ + E+ L+ V ++ +++ Sbjct: 565 VGRLRRFGDASSGEECGSMQELMMEKQRVDEELERLKG 602 >gi|153807324|ref|ZP_01959992.1| hypothetical protein BACCAC_01602 [Bacteroides caccae ATCC 43185] gi|149129686|gb|EDM20898.1| hypothetical protein BACCAC_01602 [Bacteroides caccae ATCC 43185] Length = 700 Score = 318 bits (814), Expect = 2e-84, Method: Composition-based stats. Identities = 158/702 (22%), Positives = 287/702 (40%), Gaps = 99/702 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ +V +R N Y CPFH +KTPSF+ + +KG Sbjct: 2 IDQATIDRILDAAQIMDVVSDFVTLRKRGVN-----YVGLCPFHSDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRL 120 CF+C G+ + F+ A S+ E+++ LA + + + E+K + + L + Sbjct: 57 KCFACGQGGNAVHFIMAHEQMSYPEALRYLAKKYNIEIKERELSDEEKLVQSERESLFIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A D+F + LKN D R Y RG IE F+LGY +S +L + QKG+ Sbjct: 117 NNFARDYFQNILKNHVDGRSIGMAYFRNRGFRDDIIEKFQLGYCTESHDALAKEALQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 +E +++ GL + + DRF R+IFP+ + G+V+AFGGR L +KG VKY+N Sbjct: 177 KKEYLVKTGLCYET-DDHRLRDRFWGRVIFPVHTLSGKVVAFGGRVLASATKGVKVKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK LY + A + K R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSNELYGIYFAKQAIVKQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + + + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTPGQIRMIHRFTNNMTVLYDGDAAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F+ I E + P +RAEL +L I+ I Sbjct: 343 GDDPDSFARKHNSTEFQAFIAEHETDFIRFKTNLLLEDAGKDPIKRAELIGNLVQSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------------ 457 + +R Y + L + ++E + + + Sbjct: 403 PEAIVRDVYIKECAQLLHIEDKLLVSEVAKRRETQAEKRAEQTERDRRIAERTANMTQGG 462 Query: 458 ---------------------------------DQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +GK ++ E Sbjct: 463 ATASPSSDNGIPMPPEDVMLAPEVDGDGNYLNVPPALQEDNYASFIPQEGKEGQEFYKFE 522 Query: 485 AALLLTLINHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSD 525 +L ++ + +++ +L D+ + N +++ S + Sbjct: 523 RLILQAVVRYGEKIMCNLTDEEGNEVPVTVIEYVINDLKEDDLAFHNPLHRQILSEAAAH 582 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA--LA 583 + + +L L + + ++ + D + Y+ L Sbjct: 583 IHNVGFVAERYFLAH-PDPVISKLSVDLINVRYQLSKYHSKSQKIVTDEERLYELVPMLM 641 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + ++ +++ + + + + + EK L+ +++ Sbjct: 642 INFKYAIVTEELKHMLYALQDPALAHDEEKCNALMIRYNDLR 683 >gi|320160281|ref|YP_004173505.1| DNA primase [Anaerolinea thermophila UNI-1] gi|319994134|dbj|BAJ62905.1| DNA primase [Anaerolinea thermophila UNI-1] Length = 632 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 165/654 (25%), Positives = 282/654 (43%), Gaps = 57/654 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFS 66 I ++ I I +L+ + V R N Y CPFH + +TPSF G + CF Sbjct: 4 IDEIKSRIDIVDLVSETVQLRRAGKN-----YTGFCPFHPNTRTPSFVVFPETGTWRCFG 58 Query: 67 -CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C+ GD F+ G F +++ LA AGV L V+ P+ E++ + L L+E A Sbjct: 59 ACNEGGDIFRFVMKKEGWDFSQALHFLAEKAGVKLEVMTPQKEEEREEFERLRALLEEAV 118 Query: 126 DFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ H L+ K YL RG+ IE F LGYAP+ + ++ K +S + + Sbjct: 119 TFYRFHLLETPAGKPALEYLYHRGLTRATIEAFGLGYAPEGWDNALKYFTGKKYSIDDLR 178 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +AGLL + +DRFR+R++FPIR G++ FG R L+ + K+LNSP+T LF K Sbjct: 179 QAGLLSES-EEGRVFDRFRHRIMFPIRDVNGKMAGFGARILNPQDMPKFLNSPQTPLFDK 237 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 GK LY A ++ ++VEGY+DV++L QAG +N VS +GTALTE Sbjct: 238 GKLLYGLDRARKAIR----------QMDQAVIVEGYLDVIALHQAGFENAVSPMGTALTE 287 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID------------------LVLCHLIPGN 346 QLRLL + + RIVL D D G +A + ++ L+ Sbjct: 288 DQLRLLKRFTRRIVLALDPDTAGQKATLRGLEVARQAMDQSTEVVFDARGLLRHEARLQA 347 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + V L G+DPD + A++ LI + P+V + + ++ + P ++E+ Sbjct: 348 DLRVVTLPEGKDPDDLVLS-DPEAWKTLIANARPVVIHVMETLAAGQNLDDPKVKSEIAA 406 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + I I + R Y Q + L+ + ++ + + R + Sbjct: 407 QVLPLIEDIGNPIEREDYRQRLARLLRVDERAFVGMSTPRAERTPRRRREPVPATAKPPV 466 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQKLWSFLFSD 525 + + L ++ L L + LQ+ L + ++ + Q+L + Sbjct: 467 LTTVRPTRALEEQTLRLLLHFLELLSDLDRFLQQNRLARLGVMDFEQADHQQLMRVILDA 526 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 Q + +E ++ E L + + + + ++ ++Q + Sbjct: 527 M-NQDEYDVDEYVRQFTPESLQEKLSDYLKPLGEKEISP----------QEAFEQLVRTI 575 Query: 586 KRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILISILH---EVHIQIHQIESQ 634 R R L E+ Q+ +G+++ L+ + E+ IH + Q Sbjct: 576 LRLRELH--IREVLDQLRFLSAEGQGDSDFQTGLLESMKQSAEILRYIHYAQKQ 627 >gi|306827614|ref|ZP_07460894.1| DNA primase [Streptococcus pyogenes ATCC 10782] gi|304430177|gb|EFM33206.1| DNA primase [Streptococcus pyogenes ATCC 10782] Length = 601 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 155/637 (24%), Positives = 271/637 (42%), Gaps = 55/637 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A G+ L P + + L+ Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D IE F +G APD L + L +K Sbjct: 126 TLHEDAAKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL----SKGESVKY 233 + E +++ +GL D S T YD FRNR++FP+ RG +IAF GR + KY Sbjct: 185 YEEGQLVASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K LY+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+S+GTALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + Sbjct: 295 AVASMGTALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRM 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ Y I D L + + R + R +L Sbjct: 410 QSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQAQAISNLV-----TLPM 464 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 465 PKSLTAIAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------- 516 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-S 592 + E+ ++++R + + E + ++ L KR +LL Sbjct: 517 ------HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAE 564 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R + K++ + + KG+ + ++ ++ Sbjct: 565 RDLHKQGKKVRESSNKGDHQAALEVLEHFIAQKRKME 601 >gi|189462951|ref|ZP_03011736.1| hypothetical protein BACCOP_03653 [Bacteroides coprocola DSM 17136] gi|189430233|gb|EDU99217.1| hypothetical protein BACCOP_03653 [Bacteroides coprocola DSM 17136] Length = 731 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 146/486 (30%), Positives = 241/486 (49%), Gaps = 27/486 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V RR N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + L + Sbjct: 57 KCFSCGKGGNVVHFIMEHEQLSYYEALKWLARKYNIEVKERELTNEEKQAQSLRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A+++F L N D + YL RG I+ F+LGY+ DS +L + QKG+ Sbjct: 117 NQFASEYFQDVLYNHIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDSPDALAKAAIQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 EE +++ GL DN + +DRF R+IFP+ + G+++AFGGR L +K +KY+N Sbjct: 177 KEEFLVKTGLCYRKDNG-SLHDRFWGRVIFPVHTLSGKIVAFGGRVLSSATKNVQMKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK + LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTSEQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ I + + P +RA L + I+ I Sbjct: 343 GDDPDSFARKHNATDYQAYINDHEVDFIRFKTNLLMEEAGKDPIKRASLISSIVKSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D +R Y + L Q+ +K + E + + + ++++ R Q + Sbjct: 403 PDAIVRSVYIRECSQLL-QMEEKILVEATAKLIEQARENKFKEEQRRQYRERQLAATTPN 461 Query: 476 LSKKPS 481 S Sbjct: 462 TGTPAS 467 Score = 40.3 bits (92), Expect = 0.99, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 20/144 (13%) Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L+E L + H +L+E + D + F+ ++ L Sbjct: 590 LKEDELQFHVALHRQMLKEAEMHIHDENFTAERY----------FIAHPVPEISKVAVDL 639 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 DR + + L L + ++ + + + Sbjct: 640 AS----------DRYQLSKYHSKGQKIISDEERLHELVPRLLLDFKLSIVDEEMKHTLQA 689 Query: 602 IAQVTAKGEAEKTAILISILHEVH 625 +A + ++ ++ E+H Sbjct: 690 LANPEIANDPQRYMEIMQRYKELH 713 >gi|312128162|ref|YP_003993036.1| DNA primase [Caldicellulosiruptor hydrothermalis 108] gi|311778181|gb|ADQ07667.1| DNA primase [Caldicellulosiruptor hydrothermalis 108] Length = 617 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 138/625 (22%), Positives = 253/625 (40%), Gaps = 50/625 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L + I +++ YV + N + A CPFH E+TPSF+ + +K ++C Sbjct: 33 ERVVEQVLSKVDIVDVVSMYVPLKKVGVN-----FRALCPFHQERTPSFYVSPAKQIFHC 87 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + K K + +LI L Sbjct: 88 FGCGVGGNAIHFVMRIENLTFTEALKVLAEKAKIDVDFSQSLSAKDRVLAKQKEELISLH 147 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++F L + Y+ +RGI + F LG+ P++ ++ Sbjct: 148 HDCFEYFQRQLYLRENIDAARYVLKRGIRKETAKQFGLGFCPENNNLYEMLSKKYSKEII 207 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I + + +Y RF RLIFPI + +VI FGGR + ++ KY+NSP+T++ Sbjct: 208 DKSG----IFIERNGKNYCRFEGRLIFPIFDTMNRVIGFGGRIIDDSQAPKYMNSPDTLI 263 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY A + ++VEGYMDV+SL Q G+ NVV LGTA Sbjct: 264 FSKSKVLYGLNIAK------------GSKEKDFVVVEGYMDVISLHQEGIDNVVGVLGTA 311 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ LL + +VLC D D G A +++ D+ G V + L +DPD Sbjct: 312 LTQDHSFLLRRYKNEVVLCLDSDQAGKNATFRSGDI---LYQNGLMVKVMELENAKDPDE 368 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKL 420 +I+ +GK AF ++ ++D K+ + N + D++ + I ++ Sbjct: 369 YIKKFGKDAFLLKKQNAMFVIDFKIKQISSNYDLSKSDQKFRFVREYFEKVLMPISNEVE 428 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + Q + E + K Q+ + + Sbjct: 429 RQEYIKKLSQLTQIDEDAILKEFTKNENIKLKRIESIQHFKQVQQKSNLTEEERIKKNDI 488 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL + + + + + +++ L+S + + E + Sbjct: 489 D-----LLSIYVEWANKSESIRNAVTEDDFCTEDIKILFSSIKNLINEGMELTYSMLLTF 543 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + ++L +L ++ ++ R L R+ E +K Sbjct: 544 VNDE---KVLSELTSFSSKGF-------ETEEAAKRAIEELKTNNNRMLWLRREMLEAQK 593 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 + G+ EK L ++ ++ Sbjct: 594 R-------GDYEKVLKLQMLIRKIK 611 >gi|119944096|ref|YP_941776.1| DNA primase [Psychromonas ingrahamii 37] gi|119862700|gb|ABM02177.1| DNA primase [Psychromonas ingrahamii 37] Length = 583 Score = 317 bits (813), Expect = 3e-84, Method: Composition-based stats. Identities = 173/638 (27%), Positives = 286/638 (44%), Gaps = 75/638 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD-----------EKT 50 PR+FI DL+ I + I V ++ DY ACCPFH+ +K Sbjct: 4 RIPRNFIDDLIARTDIVDFIDSRVKLKKQGK-----DYRACCPFHNGNNNSSFSVSSDK- 57 Query: 51 PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110 FY+CF+C V G+ LSF+ G F+++++ LA + +P + K Sbjct: 58 ---------QFYHCFNCGVSGNVLSFIMEYDGIEFVDAIETLAEQLSIEVPREESGFGKA 108 Query: 111 EK----IQTDLIRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + + DL +L+ F+ L+ ++ +++ YL RG+ ++ FK+GYAPD Sbjct: 109 HQSSYVDRKDLYQLMADIAVFYQQQLRTHKNSQQVINYLKGRGLSGQTVKHFKIGYAPDG 168 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 +R+ E+++IEAG+LI + S SYDRFR+RL+FPI RG+VI FGGR L Sbjct: 169 WNEVRKRFAVSADLEKQLIEAGMLISKEKS-GSYDRFRDRLMFPIHDRRGRVIGFGGRVL 227 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 KYLNSPET LFHKGK LY + ++ R +++VEGYMDV++ Sbjct: 228 -GDNEPKYLNSPETPLFHKGKELYGLYQVKQAYKEIKR----------VLVVEGYMDVVA 276 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L Q G+ V+SLGT+ T ++ L++ + ++ CFDGD G AA++A++ L ++ G Sbjct: 277 LGQFGIDYAVASLGTSTTPEHIQQLFRHTSEVICCFDGDKAGKAAAWRALENALPYIQDG 336 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L+ GEDPDS+++ GK AFEKLI ++LPL D L++ +T D +A+L Sbjct: 337 RTLRFMFLADGEDPDSYVQKEGKEAFEKLIEQALPLSDFLFQHLLNQVDMSTADSKAKLA 396 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 ++ + D R + L + + + R + Sbjct: 397 QLAIPLMSKLPDTVFRQMMEGRLIALLGIEKEGLNKLLPAAASNSRIDKRQKVTPM---- 452 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + L+ HP I + L L + L Sbjct: 453 -------------------RLAISVLLQHPNIAYGLPEFPEFKEMTLPGL-SLLNSLLEI 492 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 ++ + E+ L +L V + EA +D + + L Sbjct: 493 CRTTPTITTGQLLEHWREKPESSQLNKLA--VWQNDIKEDYYEAFFLDTLENFLN-FHLT 549 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + L + + ++ Q E ++ A+L++ + Sbjct: 550 SKIEFLKQ-----KSRLGQALTSAETQQLALLLAEQKQ 582 >gi|260655918|ref|ZP_05861387.1| DNA primase [Jonquetella anthropi E3_33 E1] gi|260629534|gb|EEX47728.1| DNA primase [Jonquetella anthropi E3_33 E1] Length = 578 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 169/624 (27%), Positives = 268/624 (42%), Gaps = 54/624 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P + + + + +IG+ V ++ N Y CPFHDEKTPSF + + Sbjct: 1 MSDP--IVDQIKAALDVVEVIGESVRLTKKGRN-----YTGLCPFHDEKTPSFMVSQERQ 53 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C GD SF+ G SF E+++ LAA AG+ LP + + ++ DL L Sbjct: 54 SWHCFGCGKGGDLFSFVMLKDGLSFPEALEYLAARAGIDLPR-----QGRRQVSKDLFAL 108 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A F+ L+ YL+ R + A F+LG+AP++ SL + L++ G SE Sbjct: 109 MEEAVSFYRQELRGPGGAAARAYLERRNVSPEAAAAFELGWAPNAWQSLSDQLKRGGASE 168 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++AGL+I G+ YDRFR R+IFPIR+ +V+A GGR + GE KYLNSPE Sbjct: 169 ASLLKAGLVIQGNRG-NCYDRFRGRVIFPIRNVPSRVVALGGRLI-DGEGAKYLNSPEGE 226 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ K NLY A +++ R ILVEGYMD L L G V+SLGT Sbjct: 227 LYSKKNNLYLLDRAKESIREKGRS----------ILVEGYMDALRLHLCGWAEGVASLGT 276 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q LL + + + +C+D D G A + + L G V V L G+DPD Sbjct: 277 ALTEEQAALLRRFADKCYICYDSDLAGQTATLRGMYL---LASEGLTVYVVTLPEGKDPD 333 Query: 361 SFI-RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + G +F K + +LPLV K + + + + + ++ + Sbjct: 334 ELLQMPGGPESFTKALDGALPLVSHHIKLFRAQAEQDGVTKASRDLLESLSALSSLDLSP 393 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + L + E + R + + + + P + Q + + Sbjct: 394 HRA----ELCQALGLTDYQLRQELERFRRPVRADVKRSETAAPQSKTSQRDKMFHES--- 446 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 EA + L + + + + LQ + + L S L Q Sbjct: 447 ----EACMTYLLWSQKGLRGGREALQVPRLLETPLLQDIAAALLS--GSDPGELESRWLQ 500 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L E E L + + + G + + L+ R R R+ ++ Sbjct: 501 -LGETAQKEALTEGEYSISRFG----------STAEEQWNVLLSALLR-RATERRYAALK 548 Query: 600 KQIAQVTAKGEA-EKTAILISILH 622 ++I + A E + L L Sbjct: 549 EKILRGEATEEEVAQWGSLSRELK 572 >gi|313884193|ref|ZP_07817959.1| DNA primase [Eremococcus coleocola ACS-139-V-Col8] gi|312620640|gb|EFR32063.1| DNA primase [Eremococcus coleocola ACS-139-V-Col8] Length = 617 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 166/646 (25%), Positives = 289/646 (44%), Gaps = 47/646 (7%) Query: 1 MNY-PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y P + I + + I +++ QYV ++ +N Y A CPFH+++ PSF ++SK Sbjct: 1 MAYLPEELITRVRQEVNIVDVVNQYVQLKKQGSN-----YTASCPFHEDRNPSFSVSESK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLI 118 Y CFSC G+ F+ + G F+ +VQ++A + GV L + K+ L Sbjct: 56 QIYKCFSCGRGGNVFGFIQEIEGLDFVAAVQKVADMGGVILDQSLFTHHQSKQSKYQSLY 115 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ E F+H+ L ++ + + YL ER + I+ F+LG APD L +L ++G Sbjct: 116 QIHEKTASFYHYYLTQSQKGQDAFNYLTERKVKQETIDYFQLGAAPDKSELLWAYLEKEG 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 FSE+ ++ +G+ D+ DRFR RLI P++ RGQV+AF GR G+ KYLN Sbjct: 176 FSEQDLLASGIFYQTDSGQIL-DRFRGRLIIPLKDMRGQVVAFSGRVYQSGDHSNAKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K K L+N GA +++ + +++ EGYMDV++L QAG VV Sbjct: 235 SPETAIFNKSKLLFNHDGARASIRQK----------NQVLVCEGYMDVIALHQAGFHEVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LT+ L L K++ I FDGD+ G +A +A DL +V ++L Sbjct: 285 ASMGTSLTQDHLTQLGKMTNHIYFIFDGDEAGQKATQRAFDLSQNL--SEIQVKALILPG 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD FI+ G+ AF+ L+ ++ D + + ++ + + + L I I Sbjct: 343 GQDPDEFIQARGQGAFQDLLNQAQTAYDFVKRYLAKSFDLSQQGDLSLYIQALLKEIQKI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ-------RLMQ 468 + + + + + KK +D K Q L Q Sbjct: 403 PMKIEQELRLRELAQEFDLSENLLKEQFERLDYQRKKETTKQDLKQIEQADAGNTGSLTQ 462 Query: 469 SSLVKGKLSKKPSLR----EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + K S E L + LI + + + ++ ++ L + Sbjct: 463 ELIFDASPLKIRSQAAFESEKILCMLLIYYEEAWPYIERLASPPMLFHDFARRALMALEA 522 Query: 525 DFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E F I ++ +R L QV + A + D + + Sbjct: 523 YYYEGGQSFPLTGIIDQIEDRD----LNHFFTQVLWDREIIPFSLALMDDCLKVIDREFK 578 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +E+++++ K + K L+ ++ + Q+ Sbjct: 579 YL--------EVKELQEKLLDAQKKMDKNKANQLMIQMNHLLRQLK 616 >gi|296112138|ref|YP_003622520.1| DNA primase DnaG [Leuconostoc kimchii IMSNU 11154] gi|295833670|gb|ADG41551.1| DNA primase DnaG [Leuconostoc kimchii IMSNU 11154] Length = 618 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 135/646 (20%), Positives = 260/646 (40%), Gaps = 48/646 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI ++ + I ++IGQY D +R + CPFHD++ PS ++K Sbjct: 4 RIPEAFIAEVRQKVNIVDVIGQYTDLVKRGRQ-----WTGSCPFHDDRHPSLFVEENKQV 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 + CFSC G SF+ G S+ E++ LA A + + + + + + Sbjct: 59 FNCFSCGRSGSVFSFVMEKEGLSYPEAILALAEQADMTVDSGISAGVNHQVDGTTQSIYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + H L N Y D+R + I+ F +G+ P+ +L + + + Sbjct: 119 LHTAAQRLYQHILLNTTSGEQALAYLHDKRQLTDDIIKQFGIGFVPED-NALLSYAKDQN 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E + + L I DRF R+++PI++ RGQV+ F GR L++ +KY+NSP Sbjct: 178 ISPEIMTASELFITNAQGD-LRDRFSGRIVWPIKTERGQVVGFSGRALNQDNKIKYMNSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ F KGK LYNF A N+++ ++ +++ EG+MDV+S AG V++ Sbjct: 237 ESPFFTKGKILYNFDLAKNHIR----------QTNTVMIFEGFMDVISADMAGKSVGVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT ++ L +++ RI+L +DGD+ G AA ++I+L+ H + V L Sbjct: 287 MGTALTREHVQQLARVAQRILLVYDGDEAGQNAARRSINLIREHAK-NMDIGVVHLPDNL 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD G ++++ +++ + + + + + Sbjct: 346 DPDEVRIQRGLKVLQQVLEQNIQTPVEFLVNAARSGKNLSNQVQYLSFLQEVMDTLKLAT 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + I + Q + + R R+ + + Sbjct: 406 PVEQDIQLTRIANEFGTEKQALQAQLKQSIKQKPHQNRDRNTQDEYVMEPPVYHDNFEAE 465 Query: 478 KKP-----------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 E ALL+ +I P ++ + + +++ Q L L + + Sbjct: 466 APINVTINQTITQVEQAERALLMAMIKSPQVMLRVKET-TGFAFLHSDYQ-LLMMLTNIY 523 Query: 527 VEQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 Q F + + + + + ++R D + ++ L + Sbjct: 524 QAQNPGPFNLAQYMDFVQKPELNQKIMAMERTYGDLAIE-----------KEAINDYLRI 572 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + Q ++++ I + + K L++ L + + Q Sbjct: 573 IMQDAPIETQIHKLQQLITIAKQQHDDTKLLQLMTELINIKKKQSQ 618 >gi|309805249|ref|ZP_07699301.1| DNA primase [Lactobacillus iners LactinV 09V1-c] gi|308165483|gb|EFO67714.1| DNA primase [Lactobacillus iners LactinV 09V1-c] Length = 495 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 144/497 (28%), Positives = 232/497 (46%), Gaps = 26/497 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ + I ++I QYV ++ DY CPFH EKTPSF ++SK F+ Sbjct: 5 IPSNLIDEVRSAVNIVDIISQYVSLTKKGK-----DYVGLCPFHQEKTPSFTVSESKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ FL SF ESV +A IA + +P + + ++ Sbjct: 60 KCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPGEYNNDAIY--KKNPIKQIYF 117 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT+F+ H L + + Y+ ER + S I FK+GYAP + L L+QK +S++ Sbjct: 118 DATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGYAPKADNILYIFLKQKNYSQD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL I DRFR+RL+FP+ G IAF GR +S + KY+NSPET Sbjct: 178 LLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFSGRRISNDSQIAKYVNSPETP 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K K LY+F A + + N+ + +IL EGYMDV++ + G++ V+S+GT Sbjct: 237 LFTKSKLLYHFSEAKHAV----------NAENHLILYEGYMDVIAAYKCGIKTGVASMGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT Q+ +L +++P I++ +DGDDPG A +AI L P + V L DPD Sbjct: 287 SLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL---FNYPNMNLGIVSLPENLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +++ YG + + + + L +R + + ++ + I D Sbjct: 344 EYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRDKLDFINESITLIAKNDDPIE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHRDQKGPSQRLMQSSLVKGKLS 477 Y Q + +LQ + R + + + P+ + L S Sbjct: 404 IDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQIQALYPADEVTPKQLDNVHDS 463 Query: 478 KKPSLREAALLLTLINH 494 + LL I++ Sbjct: 464 SASFTEQKRLLFLFIHN 480 >gi|212691812|ref|ZP_03299940.1| hypothetical protein BACDOR_01307 [Bacteroides dorei DSM 17855] gi|237708596|ref|ZP_04539077.1| DNA primase [Bacteroides sp. 9_1_42FAA] gi|237724136|ref|ZP_04554617.1| DNA primase [Bacteroides sp. D4] gi|265755194|ref|ZP_06089964.1| DNA primase [Bacteroides sp. 3_1_33FAA] gi|212665713|gb|EEB26285.1| hypothetical protein BACDOR_01307 [Bacteroides dorei DSM 17855] gi|229437596|gb|EEO47673.1| DNA primase [Bacteroides dorei 5_1_36/D4] gi|229457296|gb|EEO63017.1| DNA primase [Bacteroides sp. 9_1_42FAA] gi|263234336|gb|EEZ19926.1| DNA primase [Bacteroides sp. 3_1_33FAA] Length = 691 Score = 317 bits (811), Expect = 5e-84, Method: Composition-based stats. Identities = 159/708 (22%), Positives = 297/708 (41%), Gaps = 99/708 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N + CPFHD+KTPSF+ + +KG Sbjct: 2 IDQPTIDRILDAAQIVDVVSEFVTLRKRGVN-----FVGLCPFHDDKTPSFYVSPAKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G+ + F+ ++ E+++ LA + + + E+K+ I+ L + Sbjct: 57 KCFACGKGGNAVHFVMEHEQMTYPEALRWLAKKYNIEIKERELTDEEKQVQNIRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A D+F + L N D + Y +RGI ++ F+LGY+ + +L + +KG+ Sbjct: 117 NEFARDYFQNILYNHADGKAIAMSYFRQRGIRDDIVKKFQLGYSTTASDALAQEAMRKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 +E +++ GL + + DRF R+IFP + G+V+ FGGR L KG + KY+N Sbjct: 177 KKEFLLKTGLCYEK-EDGSLRDRFWGRVIFPWFNISGKVLGFGGRVLDSRTKGVNQKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F K K LY + A + K + + +VEGY DV+++ Q G++NVV Sbjct: 236 SPESEIFSKRKELYGIYQAKAAIVK----------ADCVYMVEGYTDVIAMHQCGLENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTAL+E Q+RLL + + I L +DGD+ G++A+ + ID+ L G + +LL Sbjct: 286 ANSGTALSEQQIRLLHRFTSNITLLYDGDEAGIKASIRGIDM---LLAEGMNIKVLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T F K I + + P +RA L + I I Sbjct: 343 GDDPDSFSRKHNATEFRKYIDDHEENFIRFKTNLLLKDAQRDPIKRAGLISDMARSIGLI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV--- 472 D+ +RY L Q + E + N + +K SL Sbjct: 403 PDKVIRYTCLTECATLLNVNEQIILDEIKKHLLQRDDNYLEQIKKEKDASATIGSLPSAD 462 Query: 473 -----------------------------------------KGKLSKKPSLREAALLLTL 491 +G+ ++E LL TL Sbjct: 463 APFPAGSIPPADMPPIEVDDDVPPPFPPAEAEAGYQSYIPQEGREKYVFYVKEQLLLQTL 522 Query: 492 INHPA-----------------ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYF 532 I H +++ +L ++++ N +K+ + + + + Sbjct: 523 IRHGEKVMCYVETEENTETPLTVIEYISMDLKQDELQFHNPLHRKILAEAEAHLHDSNFT 582 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RF 588 + +L + + + + + + + L ++ + Sbjct: 583 AERYFLAH-----PDPTISKLAADMINDRYQLSKSNSQAMVKDEERLHELVPHQLIDFKL 637 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +L + + + + A+K +++ E+ ++ +I ++ A Sbjct: 638 AILEEDMKYTLQALNKPEVAANADKCLEVMAHFKEL-SELQKIMAKRA 684 >gi|50365085|ref|YP_053510.1| DNA primase [Mesoplasma florum L1] gi|50363641|gb|AAT75626.1| DNA primase [Mesoplasma florum L1] Length = 626 Score = 316 bits (810), Expect = 6e-84, Method: Composition-based stats. Identities = 148/642 (23%), Positives = 282/642 (43%), Gaps = 34/642 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P++ I D++ I +++ + V ++ N +W CPFH ++ S + K Sbjct: 4 MLIPKEVIDDIIEKSDIVSIVSERVALSKKGRN-----FWGLCPFHQDQNASMSVSPEKK 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+ CFSC V G L F+ SF E++++LA I L + + K+ T + +L Sbjct: 59 FFKCFSCQVSGTVLDFVKDFDNISFQEAIKKLAVILNYDLSKFENENPVKQNKNTIIYKL 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E + FF +L++ K YL R I + I F++G+ P + SL EHL KG++ Sbjct: 119 NEESLAFFKLNLRSNEAKHAVKYLHSRDITNEDIAFFEIGFLPKN-NSLVEHLISKGYNI 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 I+EAGL + YD F +R++FPIR+ ++I F GR + E KYLN+ ET Sbjct: 178 SDIVEAGLGTYNEERQKMYDIFTDRIMFPIRNENKELIGFSGRIIETNSEKPKYLNTKET 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K K YNF A+ + +I++EGYMDV+SL + G+ N ++ +G Sbjct: 238 PVFSKRKIAYNFSEAIKSAR----------VKKELIVLEGYMDVISLHKNGIDNTIALMG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TAL++Y + + + I + DGD+PG++ I+ ++ +V V DP Sbjct: 288 TALSQYHVSIFKNIKGTIKMFLDGDEPGIKG---NIEASQTLILNNQKVLVVNNPTNNDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D I+ K EK+I E+L ++ + + + + E + + + + Sbjct: 345 DELIKQGKKAEIEKMISEALNPLEYIISKRWPKVNSKDFNSVEEFMKEICSFVLKCNNNI 404 Query: 420 LRYYYSQAI-------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 L + ++ + ++K + + K + + +S Sbjct: 405 LYETSIDELEKITGLSKEAIINFYKKILNKQINSISNNKVEEVKTSSEKQAVNNKNTSFN 464 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K L E +L LI L+ ++ ++++ + E +L + + + E + Sbjct: 465 ILSSLKAYELAEKTILFDLIKSNKNLELIKDKIREVKFPHKEFGRLILKIINSYEENMNY 524 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 EI + + + E L++++ D + EAN + + + L +Y Sbjct: 525 NETEIKEIINQNFSQETLEEINLYESDPLMVRIKPEANTAKLIENSFEKLKMYSN----E 580 Query: 593 RQKEEIEKQIAQVT-AKGEAEKTAILISILHEVHIQIHQIES 633 ++ EI + + +K + + ++S + + + + Sbjct: 581 KKIAEINEMLNSNNLSKNDRDNLMDILSE--RIKKREEWLGN 620 >gi|157413286|ref|YP_001484152.1| DNA primase [Prochlorococcus marinus str. MIT 9215] gi|157387861|gb|ABV50566.1| DNA primase [Prochlorococcus marinus str. MIT 9215] Length = 677 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 152/628 (24%), Positives = 273/628 (43%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + SK F Sbjct: 4 SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 YYCFSC G+ + FL +F + V LA + + + +K+ + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLQGSQVEAYKKQLSRKEEL 118 Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ + ++F L N+ + + Y + +R + I+ F+LGYAP+S L +L Sbjct: 119 YKILRITKNWFKSQLNNSMGVEAMKYLISKRNLSKKIIDDFELGYAPNSWNDLFNYLSNV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F I+ +GL I DNS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPSNLILASGLAISKDNSEKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++K I+VEGY DV++L G+ N V Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVIALHSKGISNSV 287 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I+L FD D+ G+ A + I V + + Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGVLATKRVIKEVESLSLHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L+ +DPD F+ + + LI S +D + +++ + + L + Sbjct: 348 LNDFKDPDEFLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSENFQSVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I R +Y Q + +RL + + + R K R + ++ Sbjct: 408 SKIPQSSTRTHYLQKVSERLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522 + E+ ++ ++ P + E ++ +Q LW + Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINVFNTKYIQNLWEAISTVEQNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572 + E K + + + LL +L ++ D + + Sbjct: 520 LGLNYLDELKQSNSQTLQKEFSAIDLISLLTDYLALYNPELSNKINDFFNPNELFLTLLS 579 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L+L +++ L R + IE Sbjct: 580 NPKVNLLGTLSLLEKYNSLKRCRHLIES 607 >gi|188581953|ref|YP_001925398.1| DNA primase [Methylobacterium populi BJ001] gi|179345451|gb|ACB80863.1| DNA primase [Methylobacterium populi BJ001] Length = 549 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 152/538 (28%), Positives = 259/538 (48%), Gaps = 46/538 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + +P+S ++G YV R ++ A PF E+TPSF ND KGF Sbjct: 3 RITHATIEAIKDRLPVSEVVGGYVQLKRAGR-----EWRALSPFARERTPSFFVNDQKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 ++CFS G+ + F+ + G +F E+V+ LA AG+ + + E + I Sbjct: 58 WHCFSTGKHGNAIDFVMEMSGLTFPEAVEELAGRAGIEVTRDGITRETEASRAARGSAIE 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ A DFF L+ + + YL +RG+ +G+AP++ +L EHL +G+S Sbjct: 118 LLACAQDFFVRQLQASEAAQA--YLRKRGLRRRIASQLGIGWAPEAGRALLEHLADRGWS 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFR-NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + IEAG+ D+ + F R++FPIR+ +VI+FGGR + G KYLN E Sbjct: 176 TQDAIEAGVATSPDDPSVPVRDFYRGRIMFPIRNRVKEVISFGGRAMDGG-MPKYLNGRE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF KG+ LY+ A + + + I++EGYMDV + QAG++NVV+ + Sbjct: 235 TALFDKGRVLYHMDRARQAISR----------NGCAIVLEGYMDVAQVAQAGIENVVAPM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L LW+++P +V DGD+ G RAA + +D L + R+ F +L G D Sbjct: 285 GTALTVEHLHALWRVAPVVVHIADGDEAGARAADRTLDTALPWVSGDRRIVFGILPTGVD 344 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R G A + +I ++ + + LW + + P++RA+LE ++ + + ++ Sbjct: 345 PDDLVRSAGPNALQAVIRQAQHMAERLWLKLRAETPGDGPEDRAKLETGIRATLAVVGEE 404 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 +R ++ + R ++L G ++ + + ++ +L Sbjct: 405 TMRRAFTDELLRRTRRL-------------------------GQARPQLGPTALERRLRP 439 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 REAAL++ +++HP L + +++ Q L L E Sbjct: 440 AIPAREAALVVAVLDHPEYLDASIERFCALKFAAPAAQTLQERLVRAAGTGTPPDLGE 497 >gi|308234833|ref|ZP_07665570.1| DNA primase [Gardnerella vaginalis ATCC 14018] gi|311114793|ref|YP_003986014.1| DNA primase [Gardnerella vaginalis ATCC 14019] gi|310946287|gb|ADP38991.1| DNA primase [Gardnerella vaginalis ATCC 14019] Length = 700 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 129/621 (20%), Positives = 231/621 (37%), Gaps = 74/621 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFHDEKTPSF G + Sbjct: 5 IVKEDVERVRAAADLYDIVSATVTLKPSG----TGTFVGLCPFHDEKTPSFSVRPGLGVW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118 +CF C GD ++ F E+V+ LA V + + K + LI Sbjct: 61 HCFGCGAGGDVFKYVEQKENIDFREAVELLADRYHVEVHYDQSQAGKDSAHAGSKRARLI 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF + + L R E F GYAP+S +L +L KGF Sbjct: 121 EANEEAQRFFVSQINSKEAAPARSLLAGRNFTQAQCERFGCGYAPNSWDTLVRYLSNKGF 180 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNS 236 + +++++AGL G YD FR RL +PIR S G+ + FG R L +S+ KY+N+ Sbjct: 181 TRQELLDAGLARQGQR--GIYDYFRGRLTWPIRDSTGRTLGFGARKLYDDDSISAKYINT 238 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+T+L+ K + LY A + + K +++VEGY DV++ AGV V+ Sbjct: 239 PDTVLYRKTQVLYGIDIAKSNIVKK----------RQVVIVEGYTDVMACHLAGVDTAVA 288 Query: 297 SLGTALTEYQLRLLWK----------------------LSPRIVLCFDGDDPGLRAAYKA 334 + GTA +++ + +S RIV FDGD G +AA A Sbjct: 289 TCGTAFGAEHAKIIRRLIADDSLGAIQLVGPVKVEGQKVSSRIVFTFDGDAAGQKAALHA 348 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L L + + DP G A LI + PL D + Sbjct: 349 FGLDSAFLT---QTFVAVADNNLDPCDLRIQRGDEAVRSLIARANPLYDFVIDTVIRKFD 405 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----- 449 + + + + I+D+ L Y++ + E R Sbjct: 406 TSFATGQMGAVKAVAPLVAQIRDRSLLDLYTRKAVRNIGVDLDVMRREVESNRRRLHVID 465 Query: 450 ------------------WKKNARHRDQKGPSQRLMQSSLVKG---KLSKKPSLREAALL 488 + + ++ ++ +++S+ K+ + E + Sbjct: 466 DDAYSKSYSSIVSADSRVFDQRSQSMNEAAIKTAMLRSAYKNQSYYKVDDSVFMCEQQFM 525 Query: 489 LTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L+ P + + +L + + L+ + + + + + + G Sbjct: 526 AVLMQSPLAFNSQLFAQLTLNNFITPVFRTLFQAFVAAGGLPTSNVSQGLWLHIITKAAG 585 Query: 548 ELLKQLDRQVRDAGLWSATTE 568 +L+ ++ L + ++ Sbjct: 586 PMLEGAINELSVMPLPLSLSK 606 >gi|198277659|ref|ZP_03210190.1| hypothetical protein BACPLE_03882 [Bacteroides plebeius DSM 17135] gi|198269356|gb|EDY93626.1| hypothetical protein BACPLE_03882 [Bacteroides plebeius DSM 17135] Length = 709 Score = 316 bits (809), Expect = 7e-84, Method: Composition-based stats. Identities = 147/492 (29%), Positives = 237/492 (48%), Gaps = 26/492 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V RR N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ S+ E+++ LA + + + E+K+ + L + Sbjct: 57 KCFSCGKGGNVVHFIMEHEQLSYYEALKWLANKYHIEVKERELTDEEKQAHSLRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A+++F L N D + YL RG I+ F+LGY+ DS +L +QKG+ Sbjct: 117 NQFASEYFQDILYNHIDGQRIGMTYLRSRGFRDDIIKKFQLGYSTDSHDALARTAKQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL---SKGESVKYLN 235 EE +++ GL D+ + DRF R+IFP+ + G+V+AFGGR L +K +KY+N Sbjct: 177 QEEFLVKTGLCYRKDDG-SLRDRFWGRVIFPVHTLSGKVVAFGGRVLSAATKNVQMKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK + LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+RL+ + + I + +DGD G++A+ + ID+ L G + LL Sbjct: 286 ASSGTALTSDQIRLIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNIKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ I E + P +RA L + I+ I Sbjct: 343 GDDPDSFARKHNATDYQAYINEHEVDFIRFKTNLLMEEAGKDPIKRASLISSIVKSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D +R Y++ LQ + I + ++N Q+ Q Sbjct: 403 PDSIVRSVYTRECSQLLQMEEKILIEAVNKLIEQAQENKYKEIQRKQRQATQDVQPAPPT 462 Query: 476 LSKKPSLREAAL 487 + E + Sbjct: 463 TYPETQPTEIPI 474 >gi|328948110|ref|YP_004365447.1| DNA primase [Treponema succinifaciens DSM 2489] gi|328448434|gb|AEB14150.1| DNA primase [Treponema succinifaciens DSM 2489] Length = 600 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 152/640 (23%), Positives = 276/640 (43%), Gaps = 55/640 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ I +L+ +YV ++R +N +W CCPFH+EKTPSF + K FY Sbjct: 5 IAKESIDEVAEKTDIVSLVSEYVPLEQRGSN-----WWGCCPFHNEKTPSFSVSQDKKFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE----KKEKIQTDLI 118 +CF C V G+ F+ + SF+ESV+ LA AGV L + + KI+ + Sbjct: 60 HCFGCGVSGNVFDFVREMEKLSFVESVEFLAKKAGVQLSYSNGSAKSVDSSASKIKDEYK 119 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L FH+ L K Y+ +RG+ +E FK+GY+P R L++ L +K Sbjct: 120 NLYTRVAGMFHYMLMETPAGKFALGYILKRGLSQEILEKFKIGYSPSDRKWLKQFLLKKN 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLN 235 +SE+ + +GL + +RL+FPI G V+A GGR L +S KYLN Sbjct: 180 YSEDFLNNSGLFSKNYPDCAFFS---DRLMFPIFDKDGDVVAMGGRFLRGDAQKSPKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S + I + KG LY F A + +++ + +I EGYMD ++ Q G+ V Sbjct: 237 SGDLIQYKKGSTLYAFNFAKSSIREKHK----------VIFCEGYMDCIAYHQCGITWAV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + LGT+LT+ Q+ L+ I L FD D G +A +AI + V + LS Sbjct: 287 APLGTSLTDEQISLVKHFVEEIYLSFDSDGAGQKATKRAILMCR---KQDVAVKVIRLSG 343 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DP + +G + ++ D L + E +TP +++ + I+ + Sbjct: 344 GKDPAEIMLNFGAEYLTNEVNNAIFDSDYLLSKLQELYPKDTPMGKSKASLDFFEYIDSL 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + + + + Y K + R R+ + S +K Sbjct: 404 QSDVQKDACLDQLCQTYGIEKEAARRD---YFNRDKVSYRFRNASTEQKNPADSEKIKVT 460 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + A++ + ++ Q+ + ++ ++ ++L+ + + + F Sbjct: 461 AELQ------AVMTAVTEDVSLFQKMCECVSVDDLSDSYSKQLF-AVMQECQKNGSFSVS 513 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 I R+ + F +L+ ++ ++ G + E+ I Y + R+K Sbjct: 514 NILNRIDQENFRKLI--IENVSKNTGRIQESAESCI------------SYLKRNAYKRKK 559 Query: 596 EEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIE 632 I ++I+ ++ + L E+ QI ++ Sbjct: 560 MSIMEKISSLSRSILPEDKALLVELTKQKMELDFQIENLK 599 >gi|224025790|ref|ZP_03644156.1| hypothetical protein BACCOPRO_02532 [Bacteroides coprophilus DSM 18228] gi|224019026|gb|EEF77024.1| hypothetical protein BACCOPRO_02532 [Bacteroides coprophilus DSM 18228] Length = 735 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 141/462 (30%), Positives = 230/462 (49%), Gaps = 27/462 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V RR N Y CPFH+EKTPSF + SKG Sbjct: 2 IDQATIDRILDAAQIVDVVSEFVTLRRRGVN-----YIGLCPFHNEKTPSFSVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 CFSC G+ + F+ ++ E+++ LA + + + E+K+ + L + Sbjct: 57 KCFSCGKGGNVVHFIMEHEQLTYYEALKWLARKYNIEIKERELTDEEKQAHSLRESLFVV 116 Query: 121 IEVATDFFHHSLKNARDKR--LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++F L N D + YL RG I+ F+LGY+ DS +L + QKG+ Sbjct: 117 NQYAAEYFQDILYNNIDGQRIGMTYLRGRGFRDDIIKKFQLGYSTDSHDALAKATIQKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 + +++ GL D+ + DRF R+IFP+ + G+V+AFGGR L+ K +KY+N Sbjct: 177 KADYLVKTGLCYRKDDG-SLRDRFWGRVIFPVHTLSGKVVAFGGRVLNAATKNVQMKYVN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++HK + LY + A + + R LVEGY DV+S+ Q+G++NVV Sbjct: 236 SPESEIYHKSRELYGIYFAKQAIVRQDR----------CFLVEGYTDVISMHQSGIENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q+R++ + + I + +DGD G++A+ + ID+ L G V LL Sbjct: 286 ASSGTALTAEQIRMIHRFTNNITVLYDGDGAGIKASIRGIDM---LLEEGMNVKVCLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ I + P +RA L + I+ I Sbjct: 343 GDDPDSFARKHNATDYQAYINGHEVDFIRFKTDLLMEEAGKDPIKRASLISSIVKSISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 D +R Y + L Q+ +K + E + + R + Sbjct: 403 PDAIVRSVYIRECSQML-QMEEKILVEATAKLIEQARETRFK 443 >gi|251782160|ref|YP_002996462.1| DNA primase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390789|dbj|BAH81248.1| DNA primase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 604 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 155/636 (24%), Positives = 266/636 (41%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQIKNSVNIVDVIGEVVKLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A AG+ L P L+ Sbjct: 66 FHCFGCGKSGDVFKFIEDYRQVPFLESVQIIAERAGIALKITPRQSGVSSPNANPHQVLM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL +RG+D + IE F +G APD L + L +K Sbjct: 126 SLHEDAAKFYHAVLMTTTIGQEARQYLYQRGLDDNLIEHFNIGLAPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E ++ +GL + S T YD FRNR++FP+ RG +IAF GR +K + KY Sbjct: 185 YDESQLAASGLFNLSEQSNTIYDAFRNRIMFPLSDDRGNIIAFSGRIWTKNDLEKKQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K Y+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYEFYHLDKAKPVIAK----------THEVFLMEGFMDVIAAYRSGHEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GTALT + L +++ ++VL +DGDD G A K++DL+ ++ V + Sbjct: 295 AIASMGTALTPEHVTHLKQITKKVVLTYDGDDAGQNAIAKSLDLLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPDNMDNLQSQIAYVERIAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + Y + D L + + R + R P RL+ +L Sbjct: 410 QSPSITAQNSYINKVADLLPDFDYFQVEQSVNALRVQDRRRRQEAPVQPVSRLV--TLPV 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E LL L++H +L E D +D Q L+ L Sbjct: 468 TKSLTAVAKAEGHLLHRLLHHDYLLTEFRHR-KDFYFDTPTFQVLYEQLKKQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ E+ +++++ + E ++ + L R Sbjct: 520 ------QITSYDLSEMPEEVNQAYYSILESNLPEEVAPGEIDDILAKRTRLLA-----ER 568 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KQ+ + + KG+ + ++ L ++ Sbjct: 569 DLHKQGKQVRESSNKGDHDLALEVLENLIAQKRKME 604 >gi|322411496|gb|EFY02404.1| DNA primase [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 604 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 154/636 (24%), Positives = 264/636 (41%), Gaps = 50/636 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQIKNSVNIVDVIGEVVKLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLI 118 ++CF C GD F+ F+ESVQ +A AG+ L P K L+ Sbjct: 66 FHCFGCGKSGDVFKFIEDYRQVPFLESVQIIAERAGIALEIPPRQSGSSSPKTNPHQVLM 125 Query: 119 RLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L E A F+H L + YL RG+D + IE F +G +PD L + L +K Sbjct: 126 SLHEDAAKFYHAVLMTTTIGQEARQYLYRRGLDDNLIEHFNIGLSPDESDYLYQALSKK- 184 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKY 233 + E ++ +GL + S T YD FRNR++FP+ RG +IAF GR +K + KY Sbjct: 185 YDESQLAASGLFNLSEQSNTIYDAFRNRIMFPLSDDRGNIIAFSGRIWTKSDLEKKQAKY 244 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NS T+LF+K Y+ A + K + + L+EG+MDV++ ++G +N Sbjct: 245 KNSRGTVLFNKSYEFYHLDKAKPVIAK----------THEVFLMEGFMDVIAAYRSGHEN 294 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++S+GTALT + L +++ ++VL +DGDD G A K++DL+ ++ V + Sbjct: 295 AIASMGTALTPEHVTHLKQVTKKVVLTYDGDDAGQNAIAKSLDLLKDFVVE-----IVRI 349 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPD F++ + AF L+ +S + + + + + + I Sbjct: 350 PNKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPDNMDNLQSQIAYVERIAPLIA 409 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + Y + D L + + R + P RL+ +L Sbjct: 410 QSPSITAQNSYINKVADLLPDFDYFQVEQSVNALRAQDRRRLQEAPVQPVSRLV--TLPV 467 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E LL L++H +L E D +D Q L+ L Sbjct: 468 TKSLTAVAKAEGHLLHRLLHHDYLLTEFRHR-KDFYFDTPTFQVLYEQLKKQG------- 519 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 ++ E+ + +++ + E ++ + L R Sbjct: 520 ------QITSYDLSEMPEDVNQAYYSILESNLPEEVAPGEIADILAKRTKLLA-----ER 568 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + K++ + + KG+ E ++ L ++ Sbjct: 569 DLHKQSKKVRESSNKGDHELALEVLENLIAQKRKME 604 >gi|227872668|ref|ZP_03990998.1| possible DNA primase [Oribacterium sinus F0268] gi|227841482|gb|EEJ51782.1| possible DNA primase [Oribacterium sinus F0268] Length = 581 Score = 316 bits (808), Expect = 1e-83, Method: Composition-based stats. Identities = 152/622 (24%), Positives = 259/622 (41%), Gaps = 55/622 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++++ I +LIGQYV ++ + Y+ CPFH EKTPSF + K Sbjct: 1 MYYGEEIVEEIRQRTDIVDLIGQYVHLKKKGS-----SYFGLCPFHGEKTPSFSVSPGKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIR 119 +YCF C GD + F+ SF+E++++LA A V LP + K +E ++ L+ Sbjct: 56 IFYCFGCGKAGDSIRFMMEYENLSFVEAIEQLAERANVTLPEKSSGVNKGEEDLRYKLLE 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + A FF L++ + K YL +R + +I F LGYA + +L +H + G+ Sbjct: 116 INKNAALFFVKQLRSPKGKLGLQYLAKRALSGESITHFGLGYAVQEKDALYQHCKALGYE 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + E+GL D+F NR+IFPI +VI FGGR + KYLNSPET Sbjct: 176 DAILQESGL--FTFKENGVRDKFFNRVIFPIMDLHHRVIGFGGRVM-GDGEPKYLNSPET 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF K +NL+ A S++IL EGYMDV+S+ QAG V++LG Sbjct: 233 KLFDKSRNLFALNFARRS------------RESYLILCEGYMDVISMHQAGCIEAVAALG 280 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA TE Q LL + + ++LCFD D+ G +A +AI + + + L +DP Sbjct: 281 TAFTEQQAALLKRFTSTVLLCFDSDNAGRKACKRAIPI---LREKEIQAKVISLKPYKDP 337 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKDQ 418 D F++ GK A + I + + + P E + + + D Sbjct: 338 DEFLKAEGKDALMERIHNAKNAFLWEVEELKSGFNLQDPGEMQGYMEAIASLLRDCFSDP 397 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Y +A+ + + + + Q + + +L Sbjct: 398 VELENYCKAVAREQLLSAENLLYLVQKGEEKSQLSFALSKQGRREENKREKAL------- 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L L+ + Q + ++++ L E K Sbjct: 451 -TDNLEEQFLSLLLQKEEWIAPVSQYIKAEDLREELCRQVFLSL----QEGKSV------ 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L + ++ + L+ ++ ++ + L ++ + I Sbjct: 500 ----QEIMDGFLGEEEKYQKCMALYHGDLYHLDLERQEEERMLLDFIRQM-----KLRGI 550 Query: 599 EKQIAQVTAKGEAEKTAILISI 620 EK I++ + E+ + L Sbjct: 551 EKAISEAM---DGEELSRLFRE 569 >gi|330836588|ref|YP_004411229.1| DNA primase [Spirochaeta coccoides DSM 17374] gi|329748491|gb|AEC01847.1| DNA primase [Spirochaeta coccoides DSM 17374] Length = 602 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 146/633 (23%), Positives = 253/633 (39%), Gaps = 42/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ + + IS ++ YV+ R G +W CPFH EKT SF + KG Sbjct: 3 KISESVIEQIKSRLTISEVVSAYVNLTYRG-----GRHWGLCPFHHEKTASFSVLNEKGL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++CF C G F+ + +F ESV LA AGV L P+ ++K L L Sbjct: 58 FHCFGCGKSGSMFDFVMEMDHLTFGESVSVLARKAGVELREETPEDKRKRTESEALQELY 117 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + T+ F + L+N+ R YL+ RGI E F LGYAP L + L K +S Sbjct: 118 DRLTNSFRYILQNSDRAAHARRYLENRGISLEIQEKFGLGYAPAPSQWLYDFLTDKHYSA 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +GL + + + +RL+FPIR+ +G+ + FGGR L+ + KY+N+PET Sbjct: 178 SLLEASGLFSKRNERVSIFR---DRLMFPIRTWQGKTVGFGGRDLTGESTAKYINTPETA 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K +Y + AL+ L+ S IL EGY DV+++ Q+G V+ LGT Sbjct: 235 IYSKRSVVYGLYEALSELK----------SRKHAILCEGYFDVMAMHQSGFTTAVAPLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T Q + L + I FD D G A KA+ + G N +LL +D Sbjct: 285 AFTTEQCKQLHRYCDSISTLFDSDAAGQNATGKALVICQDM---GIENNVMLLDHAKDAA 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G A K++ P + L TP ++ + H+++ + + Sbjct: 342 DVLEKNGSEALGKMLENKTPGFEYLVLSAINMYDVKTPKGKSAVFSHVRSYLEATDSEIE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + + L + + + +A+ +K P + + S Sbjct: 402 RQTYIHRLAEILHVDDASIVEDLH-----HRSSAQETRKKAPETSPVSIPNLARVSSDMF 456 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 L+L L + +++ L++ L E Q Sbjct: 457 ------LMLCLATKREEFPVIRNRINVADLEDSLAVDLFTLLEDATRNDLGKTDEVFLQM 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + +L+ + ++++ + ++F + E+I Sbjct: 511 IDDERLKQLVAISFQSGAFGHNLQKGIDSSLDRI---------TLRKFEKKKKAMEDILG 561 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 T + + L+ + EV+ +I ++ Sbjct: 562 FAENETPDENSSEIRRLVLDIQEVNQEIIRLRG 594 >gi|171464017|ref|YP_001798130.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193555|gb|ACB44516.1| DNA primase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 652 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 180/676 (26%), Positives = 291/676 (43%), Gaps = 85/676 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++GQ+V + N + CPFH EK+ SF + +K FY Sbjct: 4 IPQSFIADLLNRVDIVDVVGQHVKLKKAGAN-----FQGLCPFHSEKSSSFSVSPTKQFY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 +CF C G +SFL G ++++++ LA AG+ +P +++ L + Sbjct: 59 HCFGCGAHGSAISFLMEYSGLGYVDAIEDLARSAGLDVPREERTANDVARQQQAMALSEV 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A D++ LK R YL RG+ + + LGYAPD L E Sbjct: 119 MSSAADWYRQQLKGN--TRAVEYLKGRGLTGEIAKRYALGYAPDGWQGLETVFGAYSNDE 176 Query: 181 EKI--IEAGLLIDGD-----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 +E+GLLI + S YDRFR+R++FPIR+ +GQ I FGGR L +GE KY Sbjct: 177 VAKTLLESGLLIQSEQAEGSQSMKRYDRFRDRIMFPIRNPKGQTIGFGGRILDQGEP-KY 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET LF KG LY F A ++ ++++ EGYMDV++L Q G N Sbjct: 236 LNSPETPLFSKGNTLYGLFEARQAIRAQ----------EYVLVCEGYMDVVALAQLGFPN 285 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA T +R+L + + ++V FDGD G RAA +A++ L + ++F+ L Sbjct: 286 AVATLGTACTANHVRMLLRQTDKVVFSFDGDSAGQRAAQRALEACLPLMSDDKEIHFLFL 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDS++R YG AFEK+I E+ + +K +E TP+ RA K + Sbjct: 346 PTEHDPDSYVRAYGAPAFEKVIKEATSISSFFFKVVSEGHELTTPEGRAHTHHAAKPLLL 405 Query: 414 HIKDQKLRYYYSQAIRDR----------------------------LQQLFQKYITEHSG 445 + LR + + R +Q + + Sbjct: 406 SMPPIALRTQILRELAIRTNTTPAELEAFCGLTVAPAPVRQTTYQPMQARTPGGHNQSAF 465 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-----LQE 500 G ++ A + KG ++R+ ++ K L E +L +I P + + Sbjct: 466 SGIGNRQGAPWQASKGSAKRVATQNIEPPK--APTDLAE-QMLRVIIQFPHLGKALDANK 522 Query: 501 QYQELADIRYDNNELQKLWSFLFSDF-------VEQKYFLP------EEIHQRLCERGFG 547 + L + + L + E +L Sbjct: 523 RALALKAAEQRSEKAHALMKDFLAQCDLVELIPGEGNKPATVGAGAFAMFQDQLSRSELA 582 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L + L +V + L E D+ +++ ++ L ++ EI ++IA TA Sbjct: 583 PLYEVLRNRVMGSDLEI---EGAAADLDGAFKKLELIH-----LKQEMTEIAQKIAGGTA 634 Query: 608 -KGEAEKTAILISILH 622 + + + L L Sbjct: 635 TEQDKARYRELGEKLK 650 >gi|124007963|ref|ZP_01692663.1| DNA primase [Microscilla marina ATCC 23134] gi|123986547|gb|EAY26346.1| DNA primase [Microscilla marina ATCC 23134] Length = 696 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 166/709 (23%), Positives = 288/709 (40%), Gaps = 100/709 (14%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+ + + I +++G +V ++ N +WA PF +EKTPSF + +KG Sbjct: 1 MRISEETIEQIRDVVDIVDVVGDFVSLKKKGGN-----WWAHSPFTNEKTPSFSVSPAKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDL 117 + CFS GD ++F+ + S+ E+++ LA + L P+ ++ + L Sbjct: 56 IFKCFSSGKGGDAITFVMEVEKLSYPEALRYLAQKYNIELDEDEPPTPEEVARQNERESL 115 Query: 118 IRLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + +E A+ + +L + + Y ERG IE F+LGY+ DS + + + Sbjct: 116 LIALEYASKHYEKNLHQTPEGQAIGLAYFKERGFSVKTIETFELGYSLDSWEAFTKQAQA 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYL 234 +S +++AGL ID + +DRFR+R+IFPI + G+VIAFG R L + KYL Sbjct: 176 DQYSLPILVKAGLTIDKNG--RYFDRFRDRVIFPIHNLAGKVIAFGARILKNDKKQAKYL 233 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPE+ ++HK K LY + A L+ LVEGY DV+SL QAG++NV Sbjct: 234 NSPESPVYHKSKVLYGLYQAKKSLRD-----------DDCYLVEGYTDVISLHQAGIENV 282 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S GT+LT Q+RL+ + +P I + +DGD G++AA + IDLVL G V VL Sbjct: 283 VASSGTSLTSDQIRLIRRFTPNITVLYDGDAAGIKAAIRGIDLVLEE---GMNVKVVLFP 339 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLV-----DMLWKRETENRSFNTPDERAELEIHLK 409 G+DPDS+++ G TAF+ I ++ + + + S + P +RAE+ + Sbjct: 340 DGDDPDSYVKKVGGTAFKDFINQNSQDFITFKARLYMEETKQAASGDQPFKRAEMIREVV 399 Query: 410 NCINHIKDQKLRYYYSQAIRDRL------------QQLFQKYITEHSGYGRYWKKNARHR 457 I I D R + + L + L Q R KK AR + Sbjct: 400 ESITKIPDAIKRSVFYRECSALLEVDEAVLIDEGNKILKQDAKKRQDRQFREQKKQAREQ 459 Query: 458 DQKGPSQRL--------------------------------------------MQSSLVK 473 ++ + + Sbjct: 460 KRQQQLPPPADFPFDLPPPPDGEFYIQDEGLIQVDPEMTPPPLIGEGDDTDVATEPITPQ 519 Query: 474 GKLSKKPSLREAALLLTLINH--------PAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + +E + L+N+ + E+++++++ K+ Sbjct: 520 DPFKSPIAFQEKEHIRILLNYANHDLKEDGKLCAFLLDEISEVKFETPIYAKMLEIFREK 579 Query: 526 FVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 E + Q+ +L+ + + D+ Sbjct: 580 LKEDNIITADYFIQQHENEEMKKAAVDLISERFEISENWVERHGIFVPKDEDILDSMVVK 639 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L + R + + E ++ E +L L + +I + Sbjct: 640 AILRLKLRHVRKMLTENSLKMNDAQTIEAQEAVMMLHMELKSLEKEIAE 688 >gi|23013684|ref|ZP_00053552.1| COG0358: DNA primase (bacterial type) [Magnetospirillum magnetotacticum MS-1] Length = 339 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 134/331 (40%), Positives = 191/331 (57%), Gaps = 17/331 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +P F+ +L IP+++++G+ V R+ ++ CPFH+EKTPSF N+ KG Sbjct: 1 MAFPPQFLDELRARIPVTSVVGRRVKLVRKGR-----EHQGLCPFHNEKTPSFTVNEDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F++CF C GD + F SF E+V++LAA AG+ +P P+ +E+ + L Sbjct: 56 FFHCFGCGAHGDAIGFEMRAGHLSFTEAVEKLAAEAGIEVPKASPEERVREQRRASLHDA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF LK + YL RG+ I F+LG+APDSR +L+ L K E Sbjct: 116 LEAACGFFEKHLKGPAGREGFAYLKNRGLSDETIARFRLGFAPDSREALKSALMSKECPE 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +IEAGLL ++ A+ +D FR R++FPI RG+VI FG RTL KYLNSP+T Sbjct: 176 SLLIEAGLLKKPESGAS-FDYFRGRVMFPITDRRGRVIGFGARTL-GDGQPKYLNSPDTP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKG+ LY A ++ R +++VEGYMDV+++ QAG V+ LGT Sbjct: 234 LFHKGQTLYGLAHAREMARELNR----------VVVVEGYMDVIAMHQAGFAYAVAPLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 A+TE Q+ LW+L+P +LC DGD G RA Sbjct: 284 AVTEAQIEELWRLAPEPILCLDGDAAGQRAM 314 >gi|315640586|ref|ZP_07895692.1| DNA primase [Enterococcus italicus DSM 15952] gi|315483614|gb|EFU74104.1| DNA primase [Enterococcus italicus DSM 15952] Length = 611 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 147/638 (23%), Positives = 269/638 (42%), Gaps = 41/638 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + + I +IGQYV + N Y CPFH+EKTPSF + K Sbjct: 8 KIPSTVVDSIREQANIVEIIGQYVQLKKAGKN-----YLGLCPFHNEKTPSFSVAEDKQI 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++CF C G+ F+ + SF E+V ++A + +P+ + + L+ L Sbjct: 63 FHCFGCGKGGNVFRFIEEIDHLSFAEAVLKVADLEQIPIDHALRVSQPGTVESSPLLVLH 122 Query: 122 EVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A F+HH L ++ YL +RG+ I+ F++G+AP R L R + + Sbjct: 123 DKAMQFYHHILVNTEVGQQPLDYLHQRGLTDELIQEFQIGFAPPQRTFLERIFRNESLAP 182 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-----GESVKYLN 235 + +GL ++ + + DRF R++FPIR+ +G+ IAF GR + KYLN Sbjct: 183 DAFPNSGLFVEK-DDHSLIDRFYQRIMFPIRNPQGKTIAFSGRWFEFENEEISDQPKYLN 241 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F+K L+N A ++K + I+L EG+MDV++ QAGV N V Sbjct: 242 SPETSIFNKRDVLFNLDKAKATIRK----------ENTIVLFEGFMDVIAAWQAGVTNGV 291 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT+LTE Q+R + +L+ +++ C+DGD G A + + L+ H ++ +LL Sbjct: 292 ASMGTSLTEQQIRQMEQLAAQLIFCYDGDQAGQNATMRGVQLLREHSR--LKLTTLLLPE 349 Query: 356 GEDPDSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD +IR YG +F + + + L E+ L + + Sbjct: 350 KLDPDEYIRKYGGDSFVQAMKHQQLTPFLFTMDYLATQFHLENEQEKLSYLEQLLKELTY 409 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + Y I ++ + + R +K + G Q S+ + Sbjct: 410 VDSILEQDGYLTKIANQFDIQRATLVQQLQVVKRESRKKMAPQSHTGAQSVPSQRSIQQR 469 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E LL + N + Q+ D + + Q+L+ L + + F Sbjct: 470 K--TQLQKAEELLLFRMTNDSLYRTKFKQQ--DGVFPEDHYQELFVLLDTYLDVNETFDF 525 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L + L+ + + + L + +Q Sbjct: 526 AKFLDFLQKDSLKTLMIAIGSANLS------------EEGSEQEFHDLMRQLKMAAYQQQ 573 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + ++++ + +A+ L + ++ ++ ++ Sbjct: 574 INQKQQELRHASNVSDAQLQVTLAMEIIDLTRRLKNVD 611 >gi|322433934|ref|YP_004216146.1| DNA primase [Acidobacterium sp. MP5ACTX9] gi|321161661|gb|ADW67366.1| DNA primase [Acidobacterium sp. MP5ACTX9] Length = 593 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 169/640 (26%), Positives = 275/640 (42%), Gaps = 64/640 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +F + + + I +IG+YV + +Y CPFH EKT SF N + ++YC Sbjct: 3 DNFAQTVKTQVDIVKIIGEYVKLRKTGAQ----NYSGLCPFHKEKTGSFSVNAAHNYFYC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121 F CH KGD +F+ L G SF E+V+ +AA AG+PLP P+ ++ I+ L+ L Sbjct: 59 FGCHEKGDVFTFVMKLDGLSFPEAVRAVAAKAGIPLPKREFSSPEDAQEAGIRKKLVDLH 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E AT +F LK+ YL RG+ + I F++G+APD +RE ++ + Sbjct: 119 EGATQYFEAMLKSPGAAGAREYLSSRGVTAETIAKFRMGFAPDDFNDMREKMKPHFGDDV 178 Query: 182 -----KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV----- 231 + DG + Y RFR R++FPI + +G+ IAF R L + Sbjct: 179 LRASGLFNSSEKDDDGHPTGQLYARFRKRIMFPIANEQGKTIAFTARALEAVDDKGRPIA 238 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KY+NSPET L+ KG L+N A ++ + F +LVEG MD +S+ AG+ Sbjct: 239 KYMNSPETPLYTKGNVLFNLDKAKADMR----------AHDFALLVEGQMDCISVYMAGI 288 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 +NV+++ GTA TE Q+RLL + + R+V+ FD D G AA K+I L G V + Sbjct: 289 KNVIATSGTAFTEMQVRLLSRFTKRVVVNFDPDQAGATAAEKSIAL---LTEEGFEVKVI 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 L G DPD F+R G A+ + + + L R + T D + + L Sbjct: 346 SLEGGLDPDRFVRENGIQAYMGALRTAKRQSEYLIDRAMQQFPARTADAKVQAMNFLLPH 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I + + R ++ +L E + Sbjct: 406 IRRMPSRIHRDEFAADAAQKLGIDSALMRQELKQAAAQ------------------KLES 447 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQK 530 VK ++ + E LL L+ P + + + + + + LF Sbjct: 448 VKAHRAEPANETERVLLQALVR-PETDAARVRAANGLADHPEWYEGMGAAALFDTLAHG- 505 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 PE + +L ++ L S E ++V++ + LA FR Sbjct: 506 -VAPENPIDAAQDDASRSMLAEV--------LSSGPGERSLVELVEDAFHTLA----FRH 552 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 L R++ E+ +A+ +G+ L+ +V + + Sbjct: 553 LERRQRELRMSMAEAQRRGDEAMVETLMMEKVKVDRALRE 592 >gi|302338589|ref|YP_003803795.1| DNA primase [Spirochaeta smaragdinae DSM 11293] gi|301635774|gb|ADK81201.1| DNA primase [Spirochaeta smaragdinae DSM 11293] Length = 593 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 157/551 (28%), Positives = 255/551 (46%), Gaps = 34/551 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P ++++ ++ I ++ Y+ +++ + YW CPFH EKTPSF + + Sbjct: 1 MRIPETILQEINRNLSIVEVVSDYLTLEKKGS-----RYWGLCPFHGEKTPSFSVTEDEN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF CH G +F+ + G SF+E+V+RLA AGV LP D + +K L +L Sbjct: 56 LFYCFGCHKGGSIFTFVMEMEGISFVEAVRRLAEKAGVSLPDTD-QGFVPDKKSDALEQL 114 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 FH+ L + + + YL ERGI+ IE F+LGY P R L L K +S Sbjct: 115 YARLVKTFHYFLMESEKGRNAQTYLQERGIERQTIEAFELGYVPADRRWLYRFLSAKNYS 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ + E+GL + + +RL+FPI + RG+ +AFGGR L GE KY+NSPET Sbjct: 175 KDFLAESGLFSSKYPDVSLFS---DRLMFPIYNHRGKAVAFGGRKLGSGEP-KYINSPET 230 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + L+ L +++ R +VEGY DVL++ Q+G V+ LG Sbjct: 231 ALYKKREILFGLSKVLPVIRQKKRA----------YVVEGYFDVLAMYQSGAGGAVAPLG 280 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T Q RLL + +VL FDGD G+ AA K+I + G + V L G DP Sbjct: 281 TAFTAEQGRLLKRYVNEVVLLFDGDSAGIAAARKSIPV---IETAGLEGSVVELPGGLDP 337 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+ + K I S+ + L K + +S P E+ + I I Sbjct: 338 ADMLKKEGQDSLIKSIKYSINSFEYLVKSALKEKSARQPGGEREVVAAVAPYITTIDSTV 397 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + D L+ + + GR +K D K + S +++ Sbjct: 398 KREGCVRYLSDTLRIDASSILADLEKIGR--RKEMERGDDKREERVASDSGIIRIGS--- 452 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L+L ++ + A + +++ ++++ L + + E + Q Sbjct: 453 ----ELFLMLAVVVNRASFAYVRSTIGVDDLEDSFAREIYIALEEAYRNGEE-SLESLIQ 507 Query: 540 RLCERGFGELL 550 RL + L+ Sbjct: 508 RLDRQELKNLV 518 >gi|227431670|ref|ZP_03913703.1| DNA primase DnaG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352573|gb|EEJ42766.1| DNA primase DnaG [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 623 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 145/647 (22%), Positives = 258/647 (39%), Gaps = 49/647 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI ++ + I ++IGQY ++ + CPFHD++ PS ++K Sbjct: 7 RIPQAFIDNVRSKVNIVDVIGQYTQLVKKGRQ-----WTGSCPFHDDRHPSLFVEENKQV 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 + CFSC G SF+ G S+ E++ LA +P+ + + + + Sbjct: 62 FNCFSCGRSGSVFSFIMEKEGYSYPEAILSLAESVDIPIDSSISANNGNQIDGTTQAIYQ 121 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L A + H+L N Y D+R + I+ F +G+ PD L + ++K Sbjct: 122 LHTDAQRLYQHTLLNTISGEQALAYLHDKRQLSDEIIKEFGIGFVPDD-NLLLSYAKEKN 180 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 S E ++ + L I S DRF R+++PI++ RGQV+ F GR+L S+KY+NSP Sbjct: 181 LSHEILMASELFITNSVSGDMRDRFSGRIVWPIKTERGQVVGFSGRSLDAENSIKYMNSP 240 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ F KG+ LYN A N ++ + ++ EG+MDV+S A + V++ Sbjct: 241 ESPFFTKGRILYNLDRAKNVIR----------QTGTAMIFEGFMDVISAHMADEKVGVAT 290 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GTALT +R L +++ RI+L +D D+ G AA ++I+L + + V L Sbjct: 291 MGTALTPDHVRQLSRIAKRILLVYDSDEAGQNAARRSIELFKNNAK-DIEIGVVHLPDLL 349 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD G +K + +S+ N + + +H I + Sbjct: 350 DPDEVRIQRGLQVLKKSLNQSILTPIEFLVNAARNGKNLSNQAQYLTFLHEVMQILYTGT 409 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR------------DQKGPSQR 465 + I + Q + + K H+ K P Sbjct: 410 PVEQDIQLTRIANEFGTSKQALQAQLQQTKQSVKVQNSHQSVSQLSHVASDFSPKAPEYE 469 Query: 466 LM-QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + K L E AL++ +I P +L+ A + + E Q L L Sbjct: 470 FGFPVEPNRYQKISKVELAERALIMAMIKDPYMLERVKST-AGFAFVHPEYQ-LLMMLTE 527 Query: 525 DFVEQ--KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + F + + + + + +D D + Q L Sbjct: 528 IYQRDHLGTFDIAQFMDFIQKPNLNQKIMAIDHSFGDIKVE-----------NDAVQDYL 576 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +S + +E+++ I + + K L + L + + H Sbjct: 577 RIIMEEAPVSNRVQELKQLIEIAKQQHDDAKLVQLSTELINIKKRQH 623 >gi|227538928|ref|ZP_03968977.1| DNA primase [Sphingobacterium spiritivorum ATCC 33300] gi|227241131|gb|EEI91146.1| DNA primase [Sphingobacterium spiritivorum ATCC 33300] Length = 683 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 168/668 (25%), Positives = 283/668 (42%), Gaps = 64/668 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I +L I ++G +VD +R T CPFH+EKTPSFH + +KG Y Sbjct: 24 IKKETIDKVLDTARIEEVVGDFVDLKKRGT-----SLIGNCPFHNEKTPSFHVSVAKGIY 78 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 CF C GD L F+ L S+ E+++ LA + + P + + L L Sbjct: 79 KCFGCGAGGDALKFVMDLEKYSYPEAIRYLANKYHIDVEEQERSPAQMAAQDKRESLYVL 138 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FF ++ + Y ERG I+ F+LGY+PD +L E + GF Sbjct: 139 SQWAGKFFKDNMWQTDMGQSIGLAYFKERGYREDIIKKFELGYSPDQWTALVEAAKTAGF 198 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 EE + E GL I D+ + YDRFR R++FPI++ G+VI FGGRTL +S KY+NSP Sbjct: 199 QEEYLKEIGLTIQRDDG-SMYDRFRGRVMFPIQNLTGRVIGFGGRTLKTEKSVPKYVNSP 257 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY A + + LVEGY DVLS+ QAGV+NVVSS Sbjct: 258 ESEIYHKSDVLYGLNFAKKAI----------VDADNCYLVEGYADVLSVHQAGVENVVSS 307 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + + + +DGD G++A+ + D+ L G V +L G Sbjct: 308 SGTSLTSGQIRLISRFTKNVTILYDGDTAGIKASLRGTDM---LLEEGLNVKILLFPDGN 364 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+++ +G AF+K I + + N P +RA++ + I I D Sbjct: 365 DPDSYVQKFGSDAFKKYIADHQEDFIFFKTNILLKDAENDPIKRADVIRDVVESIALIPD 424 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---------------P 462 + + + + L + ++E + K+A ++Q+ P Sbjct: 425 EIKVAVFIRQCSNLLDIEERVLLSELNNIRVKKAKDADKKNQRNLSASSSPFSPSEGDGP 484 Query: 463 SQRLMQSSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQE----------- 504 + +G + +P L+E ++ L+N+ L + Sbjct: 485 PADFFMTDEERGGPAPEPEHKITPEILQEREIIRILLNYGDYLATWEGDGDIPIAPLLLG 544 Query: 505 -LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + D+ +++ + S + ++ + + + W Sbjct: 545 SIDDVEFEDKPSAYILSVYKEYAERFEIPQAKQFFSHEDRLVSDLAITCVASPYNLSPNW 604 Query: 564 SATTEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + ++ QA+ K+ ++ S I +++ + E Sbjct: 605 NDDKRKIYVTQEYELLKNLVIQAIYRIKKRKVESEMLR-IREELRTEQDQANLEILLSKY 663 Query: 619 SILHEVHI 626 L E Sbjct: 664 QKLKEAER 671 >gi|161870398|ref|YP_001599570.1| DNA primase [Neisseria meningitidis 053442] gi|161595951|gb|ABX73611.1| DNA primase [Neisseria meningitidis 053442] Length = 557 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 170/571 (29%), Positives = 275/571 (48%), Gaps = 37/571 (6%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH EKTPSF + +K FY+CFSC G + F+ G SF E+VQ LA G+ Sbjct: 1 MACCPFHKEKTPSFSVSPTKQFYHCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMI 60 Query: 100 LPVVDPKI------EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 +P V + +++K Q L A DF+ L+ + YLD+RG+ + Sbjct: 61 VPKVRGQNDNPEVRAERKKKQQTLEETTAAAADFYAQQLR--FNPTAKAYLDKRGLSAEV 118 Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213 I + LGYAPD L + + + +++ G++ID N YDRFR+R++FPIR+ Sbjct: 119 IAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVID--NEGRYYDRFRHRIMFPIRNP 174 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RGQVI FGGR L KYLNSP+T LF KGKNLY + +++ R Sbjct: 175 RGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEVGR---------- 223 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 I++VEGYMDV++L Q GV V++LGTA T +++L + + I CFDGD G +AA++ Sbjct: 224 ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDGDSAGRKAAWR 283 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETEN 392 A++ L L ++F+ L DPDS+IR YGK FE L+ +S PL + W+ T+ Sbjct: 284 ALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDALLNQSKPLSEYFWEHLTDG 343 Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 NT + +AEL + I L Y Q + + + K+ Sbjct: 344 IHLNTQEGKAELVKTSSPLLAQITAPALAYLLKQRLSELVGIDPDNLAQLLGQEA--PKR 401 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 + + ++ K P + Q + P+L + + LIN P +L D + Sbjct: 402 HVKQKNYKLPPISVKQPVM--------PTLVQRQIRSLLIN-PDWAAYI--DLPDYLALD 450 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + L + + ++ + + + E + ++ R + E + Sbjct: 451 GDFACLANLAETIKNHPSVPATAQVLEHMRGSPYEETINRIFRSALQSEEMEGGGEEDCE 510 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + + G ++ L K ++ + +++ ++ + Sbjct: 511 NFQIGIKKLLNELKYSQIETLKQKSLQSGLN 541 >gi|168335372|ref|ZP_02693466.1| DNA primase [Epulopiscium sp. 'N.t. morphotype B'] Length = 579 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 151/527 (28%), Positives = 248/527 (47%), Gaps = 40/527 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + DFI+ + +I I +LI +Y + ++ Y CPFH+EKTPSF ++ K Sbjct: 1 MYFAEDFIEKIRTYIDIVSLISEYTNLVKKGA----SSYIGKCPFHNEKTPSFVVSEDKQ 56 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDL 117 YYCF C V G+ ++F+ SF E+++ LA A +PL + +I + + + Sbjct: 57 MYYCFGCGVGGNVITFMMEKENLSFGEAIESLAIRANIPLEYDNSRINNNREAFFKKDVI 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 L + A F++++L + + YL +RGI+ +I++F LG++P+S +L ++LR +G Sbjct: 117 FDLYKKAARFYYYNLTRNTPEYVRQYLVDRGINKDSIKIFGLGFSPNSFNALYKYLRSEG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + E ++E+GL + NS YDRF NRL+FPI S +VIAFGGR E+ KYLNS Sbjct: 177 VTNELLVESGLCVLNHNSGLIYDRFVNRLMFPIFSPTKKVIAFGGRVF-GNENPKYLNSS 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E ++FHK NLY A + + ILVEGYMDV+++ + G N V+S Sbjct: 236 ENLIFHKSNNLYGLNLAK------------MKNHEYYILVEGYMDVIAMHREGFTNTVAS 283 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA TE Q +LL + + IV+ +D D+ G +A KA + G V + L+ + Sbjct: 284 LGTAFTESQAKLLKRYTDNIVIIYDSDNAGQKATLKASKI---LRDEGFSVKILELNGAK 340 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD F++ YG + I + + + N E+ + + + I ++++ Sbjct: 341 DPDEFLKKYGNEKLQNAITVANSDIWYKITKIQMLYDLNNLPEKIKFLEQISSIIANLQN 400 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y I R E K+N + + Sbjct: 401 SIEQQLYIDEISTRFNVNKSAIEIEIKKRIVNTKENKIVYENHSKKSDI----------- 449 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 E LL L + P I + + + + + L + Sbjct: 450 ------EVDLLSVLYHTPTIYDSISEYVFPELFTEGVKRNIAISLIN 490 >gi|329116379|ref|ZP_08245096.1| DNA primase [Streptococcus parauberis NCFD 2020] gi|326906784|gb|EGE53698.1| DNA primase [Streptococcus parauberis NCFD 2020] Length = 603 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 154/633 (24%), Positives = 262/633 (41%), Gaps = 49/633 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ I + + I ++IG+ V R Y CPFH EKTPSF+ + + F++ Sbjct: 13 DKEMISQIKNSLNIVDVIGEVVSLSRSGR-----HYLGLCPFHKEKTPSFNVIEDRQFFH 67 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRLI 121 CF C GD F+ F+ESV+ LA AG+ + + + + LI + Sbjct: 68 CFGCGKSGDVFKFVEEYRQVPFLESVEILAEKAGMAVNIASQRQDYSPRVSAHQQLIAIH 127 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A F+H L + YL RG+ +E F +G APD L + L +K +SE Sbjct: 128 EDALKFYHAVLMTTTVGQNARNYLYNRGMTDELLEHFNIGLAPDESNYLFQSLSKK-YSE 186 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLNS 236 E++ +GL + S T YD FRNR++FP+ RG IAF GR ++ + KY NS Sbjct: 187 EELAASGLFNLSEQSNTIYDAFRNRIMFPLTDERGSTIAFSGRIWTEKDQAAKIAKYKNS 246 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 T+LF+K Y+ A + K + + L+EG+MDV++ +AG +N ++ Sbjct: 247 RATVLFNKSFEFYHLDKAKPVISK----------THEVFLMEGFMDVIAAYRAGFENAIA 296 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 S+GTALT+ + L KL+ +IV+ +DGD G A K++DL+ + V + Sbjct: 297 SMGTALTQEHVNHLKKLTKKIVITYDGDSAGQNAIAKSLDLLKEFQVE-----IVRIPNQ 351 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD FI+ + L+ S + + + + + I Sbjct: 352 MDPDEFIQKNSEEELANLLSHSRISSTEFFIDYFLPENMDNLQSQIAYVEKIAKIIAADP 411 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + D L + + R + R L+ +L K Sbjct: 412 SITAQNSYINRVSDLLPDFDYLQVEQSVNSYRLQDRQERQGQIVKSESTLV--TLPISKS 469 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E LL +I++ +L E + + +D L++L+ L E + Sbjct: 470 ITALVRTENHLLHRIIHNDYLLNEFRTK-ENFYFDTPSLEELYQ-LLKTNGEISPLDLSQ 527 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + Q + + + L + L E ++ Q+ L K R Sbjct: 528 LSQEVTQAYYRVLEESL------------PVEVAPGEIDDLLQKRQRLLK-----ERDIH 570 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + KQ+ + + KG+ + ++ L + Sbjct: 571 KQGKQVRESSNKGDHQLALEVLENLIAQKRNME 603 >gi|300770452|ref|ZP_07080331.1| DNA primase [Sphingobacterium spiritivorum ATCC 33861] gi|300762928|gb|EFK59745.1| DNA primase [Sphingobacterium spiritivorum ATCC 33861] Length = 683 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 167/668 (25%), Positives = 282/668 (42%), Gaps = 64/668 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I +L I ++G +VD +R T CPFH+EKTPSFH + +KG Y Sbjct: 24 IKKETIDKVLDTARIEEVVGDFVDLKKRGT-----SLIGNCPFHNEKTPSFHVSVAKGIY 78 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 CF C GD L F+ L S+ E+++ LA + + P + + L L Sbjct: 79 KCFGCGAGGDALKFVMDLEKYSYPEAIRYLANKYHIDVEEQERSPAQMAAQDKRESLYVL 138 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FF ++ + Y ERG I+ F+LGY+PD +L E + GF Sbjct: 139 SQWAGKFFKDNMWQTDMGQSIGLAYFRERGYREDIIKKFELGYSPDQWTALVEAAKTAGF 198 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 EE + E GL I D+ + YDRFR R++FPI++ G+VI FGGRTL +S KY+NSP Sbjct: 199 QEEYLKEIGLTIQRDDG-SMYDRFRGRVMFPIQNLTGRVIGFGGRTLKTEKSVPKYVNSP 257 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY A + + LVEGY DVLS+ QAGV+NVVSS Sbjct: 258 ESEIYHKSDVLYGLNFAKKAI----------VDADNCYLVEGYADVLSVHQAGVENVVSS 307 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+LT Q+RL+ + + + + +DGD G++A+ + D+ L G V +L G Sbjct: 308 SGTSLTSGQIRLISRFTKNVTILYDGDTAGIKASLRGTDM---LLEEGLNVKILLFPDGN 364 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS+++ +G AF+K I + + N P +RA++ + I I D Sbjct: 365 DPDSYVQKFGSDAFKKYIADHQEDFIFFKTNILLKDAENDPIKRADVIRDVVESIALIPD 424 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG---------------P 462 + + + + L + ++E + K+A ++Q+ P Sbjct: 425 EIKVAVFIRQCSNLLDIEERVLLSELNNIRVKKAKDADKKNQRNPSVSSPPFSPSEGDGP 484 Query: 463 SQRLMQSSLVKGKLSKKPS-------LREAALLLTLINHPAILQEQYQE----------- 504 + +G + +P L+E ++ L+N+ L + Sbjct: 485 PADFFMTDEERGGPAPEPEHKITPEILQEREIIRILLNYGDYLATWEGDGDIPIAPLLLG 544 Query: 505 -LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + D+ +++ + + ++ + + + W Sbjct: 545 SIDDVEFEDKPSAYILGVYKEYAERFEIPQAKQFFSHEDRLVSDLAITCVASPYNLSPNW 604 Query: 564 SATTEA-----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + ++ QA+ K+ ++ S I +++ + E Sbjct: 605 NDDKRKIYVTQEYELLKNLVIQAIYRIKKRKVESEMLR-IREELRTEQDQANLEILLSKY 663 Query: 619 SILHEVHI 626 L E Sbjct: 664 QKLKEAER 671 >gi|217967698|ref|YP_002353204.1| DNA primase [Dictyoglomus turgidum DSM 6724] gi|217336797|gb|ACK42590.1| DNA primase [Dictyoglomus turgidum DSM 6724] Length = 577 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 168/617 (27%), Positives = 273/617 (44%), Gaps = 56/617 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 DF++++ + I ++I +YV+ + N Y CPFH EKTPSF+ + KG Y+C Sbjct: 6 EDFVEEVKQRVNIVDVISRYVNLKKTGKN-----YVGLCPFHQEKTPSFYVSPDKGLYHC 60 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD SFL +F E+++ LA G+ LP K E+ + + + Sbjct: 61 FGCGAAGDVFSFLINYRNLTFREALEELAREVGLELPK---KDERISAEANIFLEINKAV 117 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+H L + YL +RG+ S E F LGYAP + L ++L +KGFS++ I+ Sbjct: 118 ATFYHIYLNSKYGAEGRLYLKKRGVSSEIQEKFLLGYAPLNPTLLLKYLEKKGFSKDDIL 177 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +A +L + D F R++FPI + RG+VI FGGRTL GE KYLNSPE+ LF K Sbjct: 178 KAKVLYFIKDEWK--DPFAGRVVFPIMNPRGKVIGFGGRTL-TGEEPKYLNSPESDLFSK 234 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 GKNLY + A ++K ILVEGYMD +SL QAG+ N V+SLGTA T Sbjct: 235 GKNLYALYQAKESIKK----------EGEAILVEGYMDAISLHQAGITNAVASLGTAFTS 284 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 +Q +LL + +++L +D D G +A +A+ L+ + L +DPD F++ Sbjct: 285 HQAKLLKSYTNKVILGYDQDSAGYQAGKRALSLLELEGLE--VYWLSLPHDVKDPDEFVQ 342 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 Y K F + + ES +D L + + L+ I + LR Sbjct: 343 KYSKEEFLRFVKESKTSLDFLIENTLNLPM--------NFKEKLEEIIEILTSSILRSKN 394 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +++++Q + ++ + R S R + S E Sbjct: 395 ILVQQEKIKQYLPVISRKLGVPEEGLQREIQKRIFSDRSYRNDVKIEITRYFG--VSKTE 452 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 LL ++ Q + ++ + Q++ R+ E Sbjct: 453 EVLLGLILL--KTNNSQIRNMSPEDFSFPLYQEVLKKW-----------------RIWEG 493 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E L D R + ++ ++ + +++ R+ K+EI K I + Sbjct: 494 TLEEFLNLWDEDKRVLIDRAISSGEEFINQEEVIPFLWDHFQKLRI----KKEINKLIEE 549 Query: 605 VTAKGEAEKTAILISIL 621 ++ + K L+ + Sbjct: 550 LSKVEDPAKEKELMEEI 566 >gi|226227297|ref|YP_002761403.1| DNA primase [Gemmatimonas aurantiaca T-27] gi|226090488|dbj|BAH38933.1| DNA primase [Gemmatimonas aurantiaca T-27] Length = 657 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 151/685 (22%), Positives = 267/685 (38%), Gaps = 94/685 (13%) Query: 1 MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M + ++ + I ++ ++V R G + CPFH K P+F + Sbjct: 1 MRARMIADELVEQVRSAADIVEIVSEFVPLRRSG-----GTWRGPCPFHQGKNPNFSVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 S G Y+CF CH GD +F+ LG + +V+ + G+ + + P+ + + Sbjct: 56 SHGSYHCFVCHESGDVFTFVRKRLGLDWPAAVKYVGEKVGIEV-IDTPRRAQVQDPNAPN 114 Query: 118 IRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + A ++F L + + + YL +RG+DS A + F LG+AP +LR +L Sbjct: 115 HEALAAAAEWFQQQLSDEQIGRDARAYLTQRGLDSGAWQRFGLGFAPRDAQALRRYLHSL 174 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 G + +++EAGLL D RFR R++FPI G+ + FGGR + + KYLNS Sbjct: 175 GHDDARLLEAGLLGLRDGDTEPRVRFRGRVMFPIHDELGRPVGFGGRAM-GDDQPKYLNS 233 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE+ +F K + LY A ++++ R I+VEGY+D + L AG++ VV+ Sbjct: 234 PESPVFQKRRTLYGLHTAKQAMRRTERA----------IVVEGYLDAIRLALAGIEEVVA 283 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTALTE Q +LL + + I L +D D+ G +A +++ + L V V L G Sbjct: 284 PLGTALTEEQAKLLVRYASEIFLLYDSDEAGQKATFRSG---MELLREKAAVRVVTLPDG 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDS++R G++A E + +++ + D + F+ L I Sbjct: 341 EDPDSYVRVQGRSAMETQLAQAIDVFDRQVQLLERRGWFSDLRRSRRAVDKLLPTIRAAA 400 Query: 417 DQKLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 D R Y + D RL + E + A R + Sbjct: 401 DPLTRDLYVARLADVTRLDKAAIAAEAEAQAEAERRRSTALVRQSPQQAGPPTDFGAPPH 460 Query: 475 KLSKKP------------------------------------------------SLREAA 486 + P E A Sbjct: 461 EGQGPPFDVGEEQGGVALPEPASDKAARTPWKGRRGKQGPEWKVTAIPPRPRSDEPVERA 520 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L+ ++ + + + + ++ +L+ L + E+I L Sbjct: 521 LVRAMLFDRGVAERVAERHPPESFRSDACSELFGVLLDAPFD---CDIEQIASHLSPDAL 577 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 +L++L TE + D R+L + + I + + + Sbjct: 578 R-VLREL-------------TEGSPFDAEAADITLSLSRLDARILEDRVDAILEAMRRTD 623 Query: 607 AKGEAEKTAILISILHEVHIQIHQI 631 + E + L+ E+ ++ ++ Sbjct: 624 DRTEKDT---LMRERLELETELRRL 645 >gi|319779663|ref|YP_004130576.1| DNA primase [Taylorella equigenitalis MCE9] gi|317109687|gb|ADU92433.1| DNA primase [Taylorella equigenitalis MCE9] Length = 594 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 154/631 (24%), Positives = 270/631 (42%), Gaps = 45/631 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 F +LL I ++IG Y+ + Y CPFH+EK PSF N +K Y Sbjct: 2 SDSFTNELLSRTNIVDIIGGYLTLRKSGA-----SYIGLCPFHNEKRPSFSVNSAKQIYK 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK-------IQTD 116 CFSC G+ ++FL G +F E+ + LA G+ +P E++++ Q Sbjct: 57 CFSCGESGNVITFLMKYNGMTFPEACKYLADKLGLEMPKRHRLTEREQQELKNKKSRQEL 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + + A +++ +L+++ K Y+ +R ++ +I+ F LG++ +L Sbjct: 117 MCDCLLQAQEYYVFNLQDS--KEAKTYIAKRELNEDSIKKFSLGWSGSEYKNLAHKFPDY 174 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + L + DRFRNRL+FPI + G+ I FGGRTL+ + KYLNS Sbjct: 175 DDKLLMDVGLVL---QNEELRKRDRFRNRLMFPILNENGKTIGFGGRTLNNDQP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LY F + K + ++VEGYMDV++L Q G V+ Sbjct: 231 PETEVFHKGKELYGLFENKKGIIKEKKA----------LVVEGYMDVIALSQHGFDYAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA ++ ++ L++ + I+ CFDGD G AA+KA++ L L G+ + F+ L Sbjct: 281 TLGTATSQTHIQKLYRYTSTIIFCFDGDTAGREAAWKALNECLPILKEGHSIRFLFLPPE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R YG T F+ I S PL L + N + RA +K I I Sbjct: 341 HDPDSYVRAYGGTQFKNQIKSSKPLSIYLLDELKTRFNLNEAEGRAGCYSFVKPLIATIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 ++ + + L ++++ + +KK R + + S + Sbjct: 401 KSAIKTQMEKEVSKLLNLTHEEFLADLGLSDTDFKKADRPYKKTKIKKSTRTSKV----- 455 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E + L +P + Q+ +I + + + F+ + Q + Sbjct: 456 --SVEPLEYKFIKLLAMYPYLTQKLSARHIEILKKFPKYRLVHEFINLIYKHQISVYSQL 513 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 ++Q + ++L ++ + + +V + Q + L + + Sbjct: 514 LNQVDIDVDLLQILDSIESSPLNLD-----EVESPEEVLKDTLQRVEL----DSIQTEMS 564 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 EI ++ + + L + Sbjct: 565 EIAQR-EDLEHSQKESMLQRLNRRYIALRNH 594 >gi|300087893|ref|YP_003758415.1| DNA primase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527626|gb|ADJ26094.1| DNA primase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 585 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 158/621 (25%), Positives = 262/621 (42%), Gaps = 59/621 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D + ++ I IG+Y R CPFH EK SF + ++CF Sbjct: 2 DTVSEIKNRADIIEFIGRYTKLSRSGK-----ALKGLCPFHAEKHGSFFVYPDQQSWHCF 56 Query: 66 S-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 C V GD SF+ G +F ESV+RLA I GVP+ K ++ + L ++ A Sbjct: 57 GACGVGGDIFSFIMKKEGLTFPESVERLAEIYGVPM-NNIGASSKTQEQRDTLFQVNSAA 115 Query: 125 TDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FH L + + ++ YL RG+ S ++ F+LG+A L+EHL +G+ +E + Sbjct: 116 ARLFHDLLLNSPQAEKARQYLGNRGVSSTSVSDFQLGFALPDWQHLKEHLNSQGYQDEFV 175 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 +E GLL D+ YDRFR++L+ PI + +VI FG RT+ KY+NSP++ F Sbjct: 176 LETGLLAKSDSG-RIYDRFRDKLMIPIFDHKSRVIGFGARTM-DDTLPKYINSPDSPTFS 233 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K L+ A++ ++KS I+VEGY DV++ QAG +N V+S+GTA+T Sbjct: 234 KSAALFGINMAVSDIRKS----------DQAIIVEGYFDVIASHQAGFKNTVASMGTAIT 283 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 E Q+ L KL+ I+L D D+ G A + + GN + + G+DPD I Sbjct: 284 ESQVNTLRKLTKNIILALDADEAG---AEAMARSLPHEAVLGNELKVAVAPAGQDPDDII 340 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + LI E+ PL++ + +R + N T +++ + N I IKD + + Sbjct: 341 R-KNPEDWNSLIGEAKPLMEFIIERTSHNYDLKTAGGKSKFSDEILNYIAAIKDPVRKGH 399 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + ++ + + R K + R + Sbjct: 400 YLAELSRKVAIDTAELQYGLNRLKRTSSKASPERVGPAIAANSTS--------------I 445 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---------- 533 E LL I HP + A+ + E ++++ L L Sbjct: 446 EDYLLSIYIRHPELRATCQGMKAEF-FAGTENREIFKKLNDTSKNADSALVIEDVFRPHY 504 Query: 534 ---------PEEIHQRLCERGFGELLKQLDRQVRDAG-LWSATTEANIVDVRQGYQQALA 583 + +RL E K L + + I + + + + Sbjct: 505 DYLMSIQEPKALLQERLTECALRIEEKYLKSTASNIKTILENLEPDAIEESERCQHRLIL 564 Query: 584 LYKRFRLLSRQKEEIEKQIAQ 604 + +R + R K E+ ++ + Sbjct: 565 INQRLADIFRSKNELLRRSRR 585 >gi|126696257|ref|YP_001091143.1| DNA primase [Prochlorococcus marinus str. MIT 9301] gi|126543300|gb|ABO17542.1| CHC2 zinc finger:Toprim domain-containing protein [Prochlorococcus marinus str. MIT 9301] Length = 677 Score = 314 bits (804), Expect = 3e-83, Method: Composition-based stats. Identities = 151/628 (24%), Positives = 277/628 (44%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + SK F Sbjct: 4 SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 YYCFSC G+ + FL +F + V LA + + ++ +K+ + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEEL 118 Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ V ++F L N+ + L Y +R + + I+ F+LG+AP+S L +L + Sbjct: 119 YKILRVTKNWFKSQLNNSLGLEALKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F I+ +GL I DNS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++K I+VEGY DV+SL G+ N V Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVISLHSKGITNSV 287 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I+L FD D+ G+ A + I V I + Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 LS +DPD ++ + + LI S +D + +++ + + L + Sbjct: 348 LSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + R +Y Q + ++L + + + R K R + ++ Sbjct: 408 SKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFL------- 522 + E+ ++ ++ P + +++++Q+ ++ + +Q LW + Sbjct: 462 --NEISRREKNESEIIFYYLHCPELRLFIRDEFQKREINGFNTSYIQSLWEAISKIEQNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574 + + K + + + LL N ++ Sbjct: 520 LGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNPESSNKINILINPNELFLTLLS 579 Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600 + L+L +++ L R + IE Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607 >gi|260222949|emb|CBA33027.1| DNA primase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 669 Score = 314 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 152/493 (30%), Positives = 239/493 (48%), Gaps = 32/493 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P+ FI++LL + ++G+YV + N + CPFH EK+PSF + +K FY+ Sbjct: 2 PQSFIQELLARADVVEIVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFTVSPAKQFYH 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP------KIEKKEKIQTDL 117 CF C G+ + FL G +FIE+V+ LA G+ +P + + + + + Q L Sbjct: 57 CFGCGKNGNAIGFLMDHAGMTFIEAVKDLAGQFGMVVPEEEGSPQDRARAQAQREKQNTL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++E A D + LK + R Y RG+ + F LGYAP+ +L Sbjct: 117 TSVLEKACDAYKRGLKES--PRAIEYFKGRGLSGEVAKQFGLGYAPEGWRNLASIF--PE 172 Query: 178 FSEEKIIEAGLLIDGDNSA----TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 +++ ++E+GL+I + YDRFR+R++FPIR+ +G+ I FGGR L E KY Sbjct: 173 YTDPLLVESGLVILHEAENGADEKRYDRFRDRVMFPIRNIKGECIGFGGRVL-GDEKPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F KG+ LY F A + L+ ++++ EGYMDV++L Q G N Sbjct: 232 LNSPETPVFSKGRELYGLFEARSSLR----------EHGYVLVTEGYMDVVALAQLGFPN 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA T ++ L++ + +V FDGD G RAA KA+D L + F+ L Sbjct: 282 AVATLGTACTNDHVQKLFRFTDAVVFSFDGDAAGRRAARKALDGALPFASDVRSIKFLFL 341 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDSFIR YGK AF + ++ PL L + + +T + RA + + K N Sbjct: 342 PAEHDPDSFIRAYGKEAFADYVAKATPLSRFLVESAQDACDLSTAEGRARMASNAKPLWN 401 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + D L+ I +Q + T + R ++ + Sbjct: 402 QLPDGALKLQLLSEIAQLVQLGSTELGTLWAHGTAKPAPAEAPRRKREAAP--AAEFDPD 459 Query: 474 GKLSKKPSLREAA 486 G+ E + Sbjct: 460 GEHFAYEEPAEFS 472 >gi|57239059|ref|YP_180195.1| DNA primase [Ehrlichia ruminantium str. Welgevonden] gi|58579002|ref|YP_197214.1| DNA primase [Ehrlichia ruminantium str. Welgevonden] gi|57161138|emb|CAH58051.1| putative DNA primase [Ehrlichia ruminantium str. Welgevonden] gi|58417628|emb|CAI26832.1| DNA primase [Ehrlichia ruminantium str. Welgevonden] Length = 592 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 157/638 (24%), Positives = 272/638 (42%), Gaps = 56/638 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ I + + +S+++GQ V +R N CPFH+EKTPSF +D KG Sbjct: 1 MSI----IDLIKSKVKLSDVVGQRVKLTKRGNNI-----IGLCPFHNEKTPSFTVSDEKG 51 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C GD + F + F +V LA + G+ +P LIRL Sbjct: 52 LYYCFGCGASGDVIQFTCDINALDFKGAVSYLAEMYGIDVPQHTDNQI-------GLIRL 104 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + AT +F L + Y+ R I + I+ F+LGYAP + L ++L GF+ Sbjct: 105 LNEATIWFEKQLYSN--SFALEYVKNRRITDNTIKKFRLGYAPA--HGLVKYLLSCGFNI 160 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I + GL D D F NR++FPI +S G VI FGGR++ ++ KYLNS ++ Sbjct: 161 DDIRKTGLSNVNDQ-----DYFYNRIMFPICNSVGDVIGFGGRSIINTQNPKYLNSKASV 215 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F K ++LY A+ +K+ + II+VEGYMD L L Q G+ NVV+ LGT Sbjct: 216 FFQKRESLYAAHIAVREARKAGK----------IIVVEGYMDALILHQLGIGNVVALLGT 265 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++T L LW +S +++ DGD G A KA L L + G + FV L +DP Sbjct: 266 SMTSEHLTYLWDISTEVIVWMDGDVAGKMACVKAASLALSLIKSGCIIKFVNLDTCDDPY 325 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN---TPDERAELEIHLKNCINHIKD 417 G T ++ + L + +W E + P++ L+ +K I+ I D Sbjct: 326 DICINKGITDVMAILDSAKLLSEFIWDYELSKVTSGSAIMPEQCVMLDARMKYYISKIND 385 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + YY + ++++ L Q ++ + + Q + + Sbjct: 386 SNIAKYYKKYFYNQVRNLQQYSNSKSQIFDSNGL---------VKKLVVNQFDNMTTESF 436 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE--QKYFL 533 K + A+ ++ P +L + + +N L +L + + + Sbjct: 437 SKEYNQLRAI-NIIMEFPELLDNPIIFDQFTKFHISDNSLYELQQHILNIKIALCDSVMS 495 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + G L+ + +++ + + D ++ + +L Sbjct: 496 KNVLLLELQKAGLSHLIDYVFKKMVGFKYNTTLSHDKKNDHLAISKKEIEKI----MLVE 551 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 Q ++++I + G+ L + ++ ++ Sbjct: 552 QLRYLQEEILDLRLSGKDSLAEKLSHQAQAIDTRLREL 589 >gi|317050369|ref|YP_004111485.1| DNA primase [Desulfurispirillum indicum S5] gi|316945453|gb|ADU64929.1| DNA primase [Desulfurispirillum indicum S5] Length = 601 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 158/635 (24%), Positives = 258/635 (40%), Gaps = 43/635 (6%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M +D I+ +L + I ++G +V + G + CPFH EKTPSFH K Sbjct: 1 MRKIRQDSIERVLNAVDIVEIVGGHVHLRKAG-----GSHIGLCPFHSEKTPSFHVTPDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G YYCF C G+ FL LG +F+E+++ L+ GV L +++ + +L+ Sbjct: 56 GLYYCFGCGAGGNASKFLMEKLGMTFVEAMELLSQKTGVALEYESGTEPREDSRRENLLT 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L F + L ++ R YL+ R I I+ F LGYA L + Sbjct: 116 LNRRVLLSFRNQL--GKNARARQYLESRLIPGQLIDEFGLGYA----DGREYSLLELFEE 169 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + LI YDRFR R++FPI + G V+ F GR LS KY+NSPE+ Sbjct: 170 NHDDLLELGLIASGEDKRLYDRFRQRVMFPIWDAAGGVVGFAGRDLSGKSPAKYMNSPES 229 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF K K LY + A ++K R I+VEGY DV+ Q G+ V+ +G Sbjct: 230 GLFEKKKLLYAYHIAKASIRKKRRA----------IVVEGYFDVIRAHQQGLTETVAVMG 279 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+L+ Y R L + + FDGD+ GLRAA + +L + V L G DP Sbjct: 280 TSLSTYHAR-LLGQQTDVYVVFDGDEAGLRAALRTSEL---LTQSDLALRVVFLPDGHDP 335 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D++ + + FE+L+ ++ + + R E+ S + ++ L+ IN I D Sbjct: 336 DTYFQRHRVEQFEELLSQARDVGEFRIDRLLES-SSGDVTQLSQAVRELREFINRIPDSI 394 Query: 420 LRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y+ +R+R Q F + ++ + P S ++ L K Sbjct: 395 RRQAYANYLRERTQIDPFGSGQSPSGRSRMRPPRSGGNLSTGQPLGSEASGSFLRESLRK 454 Query: 479 KPSLREA-----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + LL + + + +E L + S +E Sbjct: 455 VKKPVDKNDAAPYLLKVMFSSEEMFEEISSALGSDILSAP-YSTIKDQATSWHLE--RLP 511 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E+I +RL + + + T I + Y ++ R L + Sbjct: 512 LEQIIERLMDSPLAAPMAHILSLDIGKEDILGMTPDIIEKIESLY-----MHHRHENLKQ 566 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 Q ++ A ++ ++ L E+ ++ Sbjct: 567 QL--FAPSPSESGAPLSEDERRRMLQELLEIQREL 599 >gi|325971190|ref|YP_004247381.1| DNA primase [Spirochaeta sp. Buddy] gi|324026428|gb|ADY13187.1| DNA primase [Spirochaeta sp. Buddy] Length = 598 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 147/633 (23%), Positives = 265/633 (41%), Gaps = 44/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ + IPIS ++ YV R G W CPFH EKT SF D +GF Sbjct: 3 KVSDSVLEQIKARIPISEVVSDYVTLSARG-----GRLWGLCPFHQEKTASFSVVDDQGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCFSC G F+ + FIESV+ LA AGV + P+ +K + L L Sbjct: 58 YYCFSCKKGGSMFDFVMEMEKVPFIESVKILAKKAGVEIAEESPEDKKSRDLNETLYDLY 117 Query: 122 EVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + FH L ++ + + YL +R + + E F LGYAP L L+++ +S+ Sbjct: 118 DKIAGSFHFLLTSSAQGEHAREYLRKRNVAQNMWETFNLGYAPQDSSWLYSFLKKRHYSD 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + ++GL + + Y FR+RL+FPIRS +G+ +AFGGR L+ KY+N+PET Sbjct: 178 DLLAQSGLFSQNNAA---YPLFRDRLMFPIRSWQGKTVAFGGRDLTFTSKAKYINTPETA 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K +L+ F +L ++K + IL EG DV++L Q+G N ++ LGT Sbjct: 235 IYSKKHHLFGLFESLETIKKGQKA----------ILCEGNFDVVALHQSGFTNAMAPLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 + TE Q +LL + + + FD D G A K++ + G + + L+ +D Sbjct: 285 SFTEEQAKLLRRYCTSVEILFDSDKAGQSATAKSLVIAQNL---GMENSVLTLANAKDAS 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G+ A ++ + + L TP ++ + ++ ++ Sbjct: 342 ELVQLEGEQALKRALQQPQQGFRYLVNNAVNQYDILTPKGKSAVFNAVRPYLDATASSIE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + L ++S + L+ Sbjct: 402 KQDLIKRLAAVLNVDESSIHDDYS-----------RNAPAEVKVVATVGEMRVKPLNPAI 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + +LTL+N+ + + ++A ++ E + L+ L E+ E I Q Sbjct: 451 ISVDLYAMLTLVNNRELYLQTRYKIAVEDLEDAEAEALYDVLEEAAREEVGKHDEYILQM 510 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + ++ L Y++ RL +++ + Sbjct: 511 IGDEQLRSDVASSFTMEEFKLAPQRVINEAVNRIQ------LRTYEKKRLSNKRLLD--- 561 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 I+ + G+ E L+ E+ +I Q+ Sbjct: 562 -ISLLDGTGD-EGIEELLREKTEIDAKIAQLRK 592 >gi|301064637|ref|ZP_07205031.1| DNA primase [delta proteobacterium NaphS2] gi|300441257|gb|EFK05628.1| DNA primase [delta proteobacterium NaphS2] Length = 599 Score = 314 bits (803), Expect = 4e-83, Method: Composition-based stats. Identities = 149/620 (24%), Positives = 264/620 (42%), Gaps = 55/620 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ I +++GQ+V + N + CPFH EK PSF N K ++CF C Sbjct: 25 EEIKQAADIVSVVGQFVQLKKAGKN-----FVGLCPFHGEKAPSFTVNQDKQMFHCFGCK 79 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIEVATD 126 GD +F A +F E+++ LA V LP + +KK ++ DL R E+A Sbjct: 80 KGGDVFAFWMAYHSLTFPEALKDLADRYNVRLPRKQFSAEEKKKADLREDLYRANELAAV 139 Query: 127 FFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F L + R K YL++R + IE F+LGYAP L++ L + S E Sbjct: 140 YFQRELAHPVRGKAGRDYLEKRFVPQDMIEAFRLGYAPKGWDGLKKFLLKNKISLETAFL 199 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRS--SRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 AG+L D YD FR R++FPI + +V+ FGGR L KY+N+PET LFH Sbjct: 200 AGVLKRSDKG-RYYDLFRERVMFPIMDLTPKKRVVGFGGRVL-DDTLPKYVNTPETPLFH 257 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG LY F + ++++ R ++VEGYMD L+L + G++ VV++LGTAL+ Sbjct: 258 KGACLYGFAASRKAIRETGRA----------VVVEGYMDCLALRKHGLEEVVATLGTALS 307 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 E +R L + ++ FD D+ G +AA + + + L V+L +G DPDSF+ Sbjct: 308 ETPVRKLKGIGREAIVVFDADEAGKKAALRTLPIFLNER---LPAKAVVLPKGHDPDSFV 364 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G AF KL+ + L D ++ + D + + + + ++++ R Sbjct: 365 NSRGLDAFSKLLDAAPSLFDFYIDQKL-GSRTDDIDHKVSVLEEILPILTKVRNETQRSL 423 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + + ++ + + + K + K L + V L Sbjct: 424 YMKRLSEKTEIAEPLLFSALKDANQSSVKENPGNEIKRQFASLNANRSVGELQLLNLLL- 482 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 ++P + + N ++++ ++ + + + I +RL Sbjct: 483 ---------HYPETVGQLRGRHCRALISNPTVRRIVDIIYDGYNHSQNLTFDVIQERLDH 533 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L++ + +E + + + + QK+ I Sbjct: 534 DEDRIWLREF------GFRPAFCSEREVEQAVREFIE-----------KAQKKRIANSFK 576 Query: 604 QVTAKGEAEKTAILISILHE 623 + G+ + ++ + Sbjct: 577 RAM--GDPQAINEILKRKVQ 594 >gi|123968454|ref|YP_001009312.1| DNA primase [Prochlorococcus marinus str. AS9601] gi|123198564|gb|ABM70205.1| CHC2 zinc finger:Toprim domain-containing protein [Prochlorococcus marinus str. AS9601] Length = 677 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 150/628 (23%), Positives = 270/628 (42%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + SK F Sbjct: 4 SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCFSC G+ + FL +F + V LA + + ++ + K + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLTRKEEL 118 Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ V ++F L N+ + + Y +R + + I+ F+LG+AP+S L +L + Sbjct: 119 YKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSNKIIDNFELGFAPNSWNDLFNYLSKA 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F I+ +GL I DNS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++K I+VEGY DV+SL G+ N V Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVISLHSKGITNSV 287 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I+L FD D+ G+ A + I V I + Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSIHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 LS +DPD ++ + + LI S +D + +++ + + L + Sbjct: 348 LSDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + R +Y Q + ++L + + + R K R + ++ Sbjct: 408 SKLPQSSTRTHYLQKVSEKLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522 + E+ ++ ++ P + E ++ + +Q LW + Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574 + + K + + + LL N ++ Sbjct: 520 LGLNYLNDLKQSNSQNLQKDFSSINLISLLPDYLALNNSESSNKINIFINPNELFLTLLS 579 Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600 + L+L +++ L R + IE Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607 >gi|219847264|ref|YP_002461697.1| DNA primase [Chloroflexus aggregans DSM 9485] gi|219541523|gb|ACL23261.1| DNA primase [Chloroflexus aggregans DSM 9485] Length = 655 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 156/667 (23%), Positives = 280/667 (41%), Gaps = 71/667 (10%) Query: 6 DFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYY 63 I D+ +I I +LI V R + CPFH + +TP+F+ +Y Sbjct: 2 SVIDDIKANIDIVDLINSMGVGLRRSGR-----SFVGFCPFHPNTRTPAFYVYPDTQSFY 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF CH G F+ G F E+++ LA AG+ L + +++ + L+ + + Sbjct: 57 CFGCHAAGTVFDFVMRKQGIDFKEALELLAERAGIRLEPKNDAQRQEDARRARLLEINGI 116 Query: 124 ATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181 A +F++ L N +R + Y+ RGI+ AI+ F++GY+ D L + +KG+S E Sbjct: 117 AARYFNYVLLNLSRGEPGRAYVARRGINQDAIDAFQIGYSLDEWGHLFSYLHDKKGYSVE 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 II AGL I YDRFRNR+IFPIR+ RG+VI FGGR L E KYLN+PET L Sbjct: 177 DIIAAGLAI--PGERGPYDRFRNRIIFPIRNVRGEVIGFGGRAL-GDEQPKYLNTPETPL 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K + LY A + ++ + R I+VEGY+DV++ Q G +NVV+ LGTA Sbjct: 234 FKKSEVLYGLDLARDAIRATNRA----------IVVEGYVDVITAHQYGFRNVVAPLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL------------------I 343 L++ + L +L+ + L D D G +A + ++ + Sbjct: 284 LSKAHINQLKRLTDNVYLALDADAAGQKATLRGLETIRTTGEEEGEGRMVTTAQGIVRLE 343 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + + L G DPD I +++L+ ++ P++D + T + P ++ + Sbjct: 344 NDVTIRVIRLPAGRDPDEVI-AADPNLWQQLVEQAAPVMDFYLEAYTAGLDMHDPIQQRQ 402 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + ++ + D + Y + + + + ++N R R+++ Sbjct: 403 AIERIIPLLSEL-DGAAQRVYVARVEQITGVRSELIVDLLRARVQPARRNDRSRNKRPLL 461 Query: 464 QRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIR------------ 509 + R EA LL + +P++ + L + Sbjct: 462 RPEEPPLPPTPSPPLDERRRKTEAYLLALALRYPSVNIAIEKLLEEYHARCREAGELFGA 521 Query: 510 -----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + Q +W + ++Q+ E + + E L + L Sbjct: 522 GVEDLLEEPLHQAIWQAYLATPLDQRPTDQESLQAWI------ETLGEPLTGGAKPLLEL 575 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + V R +Q + ++ +++ R +++ ++ E+ ++ L E+ Sbjct: 576 LERRPDDVRFRHEAEQCARILRKAQVMER-IRRYNERLRELD---NEEEMERILHHLREL 631 Query: 625 HIQIHQI 631 QI Sbjct: 632 STYAEQI 638 >gi|256396129|ref|YP_003117693.1| DNA primase [Catenulispora acidiphila DSM 44928] gi|256362355|gb|ACU75852.1| DNA primase [Catenulispora acidiphila DSM 44928] Length = 700 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 135/454 (29%), Positives = 206/454 (45%), Gaps = 30/454 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + I +++G V +KG CPFHDEK+PSF + +K FY Sbjct: 5 IKDEDIDRVRQAASIVDVVGAVVQLRNGGGGNLKGL----CPFHDEKSPSFQVSPAKNFY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRL 120 +CF C V GD L F+ SF E+V+RLA + L + + +T LI Sbjct: 61 HCFGCGVGGDVLKFVMEYDHLSFPEAVERLAGQYNIELRYTEGGYTNQGVRSERTRLIEA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++F L L RG D+ AIE F +G+AP+S SL HLR +GF++ Sbjct: 121 HKAAAEYFVDQLSTPAAAHARELLAARGFDAGAIEQFHVGFAPESWESLVRHLRGRGFTD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 ++I+ GL + + DRFRNRL++PI G VI FGGR L+ ++ KYLNSPET Sbjct: 181 KEILTGGLASE--GRRGAMDRFRNRLMWPIADLSGDVIGFGGRRLTDDPDTPKYLNSPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++ K LY A + K R ++VEGY DV++ AGV V++ G Sbjct: 239 PIYKKSSVLYGLEMARREIVKQERA----------VVVEGYTDVMACHLAGVPTAVATCG 288 Query: 300 TALTEYQLRLLWK--------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 TA E +++L + L +V FDGD G +AA +A L + Sbjct: 289 TAFGEEHIKILRRLLADRNQFLGVEVVFTFDGDSAGQKAAMRA---YLDEDKFVTQTFVA 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A +L+ L + + + E ++ + + R Sbjct: 346 VEPSGMDPCDLRLAKGDAAVRELVATRTRLFEFVIRAELAKQNLDESEGRVHALRTTAPI 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 + I+D LR Y++ + L + + Sbjct: 406 VAKIRDSALRNDYTRRLAGWLGLEERDVQSAVRR 439 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 12/165 (7%), Positives = 47/165 (28%), Gaps = 7/165 (4%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 +++ + E + + P + + LA + + + + + Sbjct: 539 EAATVPGRGQRDPVAGAEREAVKMALQFPQLAGATFDGLAPEEFTVPAYAAVCAAVRASG 598 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 R+ ++ + ++ L ++ + Y + Sbjct: 599 GCAAGND-NNWTGRVQDQAPDDAIRGLITELT------VEPVHFRGKADERYVAEVMTRV 651 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 R + R+ +++ ++ ++ E+ L L + + Sbjct: 652 RVHTVDRRIKDVRSKLQRLNPVTGQEEYNKLFGELVALEQYKRGL 696 >gi|162452722|ref|YP_001615089.1| DNA primase [Sorangium cellulosum 'So ce 56'] gi|161163304|emb|CAN94609.1| DNA primase [Sorangium cellulosum 'So ce 56'] Length = 649 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 151/669 (22%), Positives = 264/669 (39%), Gaps = 82/669 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + LIG+ V RR + CPFH EKTPSFH + ++GFY Sbjct: 2 ISPETIALVKERTDLVALIGESVRLARRG-----HSFTGLCPFHKEKTPSFHVSPNRGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-----QTDL 117 +CF C G + F+ L G +F E+V+ LA AG+ + + E++E + DL Sbjct: 57 HCFGCKETGSAIDFVMKLEGRTFAEAVRALAERAGIEVAESLTEAERREAQAARRSKDDL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERG------------------IDSHAIEMFKL 159 + +A FF HSL+ H + A++ F++ Sbjct: 117 YAVNHLAATFFEHSLRGGPGSAPHPLARHAHEELERRGLPLRDGDGAADPIADALQAFRI 176 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 GYAP L +LRQ+G S GLL+ + + YDRFR+RL+F + G+VIA Sbjct: 177 GYAPFGWDGLSTYLRQQGVSPVLAERVGLLVPRSSGSGHYDRFRHRLMFAVTDVMGRVIA 236 Query: 220 FGGRTLSKGESV-------------------KYLNSPETILFHKGKNLYNFFGALNYLQK 260 F GR L KY+NSPE+ ++ KG++L+ A ++ Sbjct: 237 FSGRALPDPSPSELSSLGLTGPAPQADGAPAKYINSPESPIYTKGEHLFGLHQARQAIR- 295 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 ILVEG DV++L G+ ++ LGTA T Q +L+ + +P ++L Sbjct: 296 ---------QRGEAILVEGNFDVVALHARGIGQAIAPLGTAFTPGQAKLIKRFAPAVILL 346 Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 FDGD G +A A G +L G DPD R +G A +++ + Sbjct: 347 FDGDAAGKKATRAA---RAPCREAGLSARVAVLPSGVDPDDLARKHGPEAIARIVKAARG 403 Query: 381 LVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR---YYYSQAIRDRL--- 432 L++ L + SF E+ + ++ D LR Y+ + +L Sbjct: 404 LLEHLIDEALDGDSFGGSSLPEQLARVRAVTALLSEEDDPNLRMMAKLYADRLSSKLVIG 463 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + + ++ + + + + +L ++ Sbjct: 464 GRSPDDLRQLERVVEESLSRPRSQPTREVIPSGQTTETWERARSRAQIQEVSLEILGAIL 523 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + P +L + + A + + + + + E E ++ + Sbjct: 524 DFPELLADDDLQTALECLEGDVALAIVAARQNFTFEMG-LAASEFLAQVPAPIHSFAAGR 582 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 L V +A +T +A +++ Q + + L+RQK + Q+ + + +A+ Sbjct: 583 LVSPVFEAA---STAKATLLENSQKLSR--------QALARQKAAVVSQLQK--SAVDAD 629 Query: 613 KTAILISIL 621 L+ L Sbjct: 630 AENALLREL 638 >gi|58617061|ref|YP_196260.1| DNA primase [Ehrlichia ruminantium str. Gardel] gi|58416673|emb|CAI27786.1| DNA primase [Ehrlichia ruminantium str. Gardel] Length = 592 Score = 313 bits (802), Expect = 5e-83, Method: Composition-based stats. Identities = 157/638 (24%), Positives = 270/638 (42%), Gaps = 56/638 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ I + + +S+++GQ V +R N CPFH+EKTPSF +D KG Sbjct: 1 MSI----IDLIKSKVKLSDVVGQRVKLTKRGNNI-----IGLCPFHNEKTPSFTVSDEKG 51 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C GD + F + F +V LA + G+ +P LIRL Sbjct: 52 LYYCFGCGASGDVIQFTCDINALDFKSAVSYLAEMYGIDIPQHTDNQI-------GLIRL 104 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + AT +F L + Y+ R I + I+ F+LGYAP + L ++L GF+ Sbjct: 105 LNEATIWFEKQLYSN--SFALEYVKNRRITDNTIKKFRLGYAPA--HGLVKYLLSCGFNI 160 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I + GL D D F NR++FPI +S G VI FGGR++ ++ KYLNS ++ Sbjct: 161 DDIRKTGLSNVNDQ-----DYFYNRIMFPICNSVGDVIGFGGRSIINTQNPKYLNSKASV 215 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F K ++LY A+ +K+ + II+VEGYMD L L Q G+ NVV+ LGT Sbjct: 216 FFQKRESLYAAHIAVREARKAGK----------IIVVEGYMDALILHQLGIGNVVALLGT 265 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++T L LW +S +++ DGD G A KA L L + G + FV L +DP Sbjct: 266 SMTSEHLTYLWDISTEVIVWMDGDTAGKMACVKAASLALSLIKSGCIIKFVNLDTCDDPY 325 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN---TPDERAELEIHLKNCINHIKD 417 G T ++ + L + +W E + P++ L+ +K I+ I D Sbjct: 326 DICINKGITDVMAILDSAKLLSEFIWDYELSKVTSGSAIMPEQCVMLDARMKYYISKIND 385 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + YY + ++++ L Q ++ + + + S KG Sbjct: 386 SNIAKYYKKYFYNQVRNLQQYSNSKSQIFDS---NGLVKKLVVNQFDNMTTESFSKGYNQ 442 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVE--QKYFL 533 + ++ P +L + + +N L +L + + + Sbjct: 443 LRAVN-------IIMEFPELLDNPIIFDQFTKFHISDNNLYELQQHILNIKIALCDSVMS 495 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + G L+ + +++ + + D ++ + +L Sbjct: 496 KNVLLLELQKAGLSHLIDYVFKKMVGFKYNTTLSHDKKNDHLAISKKEIEKI----MLVE 551 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 Q ++++I + G+ L + ++ ++ Sbjct: 552 QLRYLQEEILDLRLSGKDSLAEKLSHQAQAIDTRLREL 589 >gi|254527227|ref|ZP_05139279.1| DNA primase catalytic core, N-terminal domain family [Prochlorococcus marinus str. MIT 9202] gi|221538651|gb|EEE41104.1| DNA primase catalytic core, N-terminal domain family [Prochlorococcus marinus str. MIT 9202] Length = 677 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 151/628 (24%), Positives = 271/628 (43%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + K F Sbjct: 4 SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDTKPSMTVSPGKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 YYCFSC G+ + FL +F + V LA + + + +K+ + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLQGSQVEAYKKQLSRKDEL 118 Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ + ++F L N+ + + Y + +R + I+ F+LGYAP+S L +L Sbjct: 119 YKILRITKNWFKSQLNNSMGVEAMKYLISKRNLSKKIIDDFELGYAPNSWNDLFNYLSNV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F I+ +GL I DNS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPSNLILASGLAISKDNSEKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++K I+VEGY DV++L G+ N V Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAIIVEGYFDVIALHSKGISNSV 287 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I+L FD D+ G+ A + I V + + Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGVLATKRVIKEVESLSLHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L+ +DPD F+ + + LI S +D + +++ + + L + Sbjct: 348 LNDFKDPDEFLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSENFQSVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + I R +Y Q + +RL + + + R K R + ++ Sbjct: 408 SKIPHSSTRTHYLQKVSERLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522 + E+ ++ ++ P + E ++ ++Q LW + Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRNEFLKREINGFNTKDIQNLWEAISTVEQNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572 E K + + + LL L ++ D + + Sbjct: 520 LGLYYLDELKQSNSQTLQKEFSSIDLISLLTDYFALYNPDLSNKINDFFNPNELFLTLLS 579 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L+L +++ L R + IE Sbjct: 580 NPKVNLLGTLSLLEKYNSLKRCRHLIES 607 >gi|294101588|ref|YP_003553446.1| DNA primase [Aminobacterium colombiense DSM 12261] gi|293616568|gb|ADE56722.1| DNA primase [Aminobacterium colombiense DSM 12261] Length = 581 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 157/620 (25%), Positives = 267/620 (43%), Gaps = 46/620 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 D ++ + + I++++G YV + N CPFH EKTPSF + + ++C Sbjct: 3 DDVVRQIKDRLDIADVVGDYVRLHKTGKNL-----KGLCPFHQEKTPSFIVSPDRQTFHC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD SF+ + G +F E+++ LA AGV + K + L ++E + Sbjct: 58 FGCGEGGDVFSFIMKIEGLNFREALELLAQRAGVEVE--TSPSHFSTKGKRSLYDIMETS 115 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ SLKN + YL+ RG++ + +F++G+AP + SL L ++ S ++ + Sbjct: 116 LFFYRSSLKNQGGRLAQQYLNSRGMNIESASLFEIGWAPPTWDSLWRLLFKEKVSLKEAL 175 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + GL+I+G YDRFR R+IFPIR G+++AFGGR + KY+NSPE +L+ K Sbjct: 176 DCGLVIEGTK--GIYDRFRGRVIFPIRDVSGRLLAFGGRIIDGDS-AKYINSPEGVLYSK 232 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 KNLY A +++ R +ILVEGYMD + L G + V+SLGT+LTE Sbjct: 233 RKNLYLLHMAKQEIREKNR----------VILVEGYMDAIRLHMTGYKEAVASLGTSLTE 282 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI- 363 Q RLL + + +C+D D G AA + + G V V L G+DPD + Sbjct: 283 DQARLLKRFTNNCFICYDSDTAGQEAAVRG---MYVLQQCGLDVRVVELLSGKDPDDLLS 339 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G+ F K + +LPL +L+ R PD R L ++ + Sbjct: 340 NEEGRELFRKAMERALPL--VLFHLSLRQRQLENPDTRRAAAEDLLQGLSQL-SPIDIAP 396 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + ++ L L + + K + ++ + Sbjct: 397 FLSSVSAALGILPYELQEQLESIRSAKK---SQKTISSEQSYKTMNNNENSSRNSVVDPL 453 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 EAAL+ L N + + + + E + + + L + F PE + + Sbjct: 454 EAALVYCLWND---IARRRVARPEEVFCLVENEDVKNMLAAIFS---GHSPESLEEHWRT 507 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L +S + A++L R ++I +++ Sbjct: 508 LNETTPFAILAGGGAFCDSFSEDQDC---------WDAISLALERRREEEVFKKIHERML 558 Query: 604 QVT-AKGEAEKTAILISILH 622 + +K + E+ + + L Sbjct: 559 RGEASKEDLEEYSKIAKKLK 578 >gi|146299550|ref|YP_001194141.1| DNA primase [Flavobacterium johnsoniae UW101] gi|146153968|gb|ABQ04822.1| DNA primase [Flavobacterium johnsoniae UW101] Length = 704 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 156/682 (22%), Positives = 267/682 (39%), Gaps = 89/682 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V+ R +N Y PF DE++PSF + +KG + Sbjct: 17 ISQSTIDAVFETARVEEVIGDFVNLKRAGSN-----YKGLSPFSDERSPSFMVSPAKGIW 71 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 FS G+ ++FL ++ E+++ LA + + + +K ++ + + Sbjct: 72 KDFSSGKGGNSVAFLMEHSHFTYPEAIRYLAKKYNIEIEETEQTDAEKAMTDVRESMYLV 131 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A +F L N+ + + Y ERG + I+ F LGY+P++ +L + KG+ Sbjct: 132 SEFAAKYFQDVLVNSEEGKAIGLSYFKERGFTNETIKKFALGYSPETWDALTKEALGKGY 191 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 E + GL I +DRF+ R++FPI S G+V+ FGGR L+ + KYLNSP Sbjct: 192 KLEFLESTGLTI--AREDRPFDRFKGRVMFPIHSMSGRVLGFGGRILTNDKKAAKYLNSP 249 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY F A + K + LVEGY DV+ QAG++NVV+S Sbjct: 250 ESDIYHKSKVLYGIFQAKQSIAKL----------NNCYLVEGYTDVIQFNQAGIENVVAS 299 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V GE Sbjct: 300 SGTALTPDQIRLVNRLTKNITVLFDGDAAGLRASIRGIDL---ILEEGMNVRVCAFPDGE 356 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + + N P ++A+L + I+ I D Sbjct: 357 DPDSFARKNSHDDLVAYLESNSKDFIQFKASILMGEAKNDPIKKADLIRDMVTSISKIPD 416 Query: 418 QKLRYYYSQAIRDR-----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPS--- 463 + R Y Q L QL QK + E + + +K + P+ Sbjct: 417 RIQREVYIQECARIMEISEQVLVSTLAQLVQKDLAEANKKQKQEQKPFQVFRNPPPNTGF 476 Query: 464 -----------------QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL- 505 + E ++ L+ + ++ ++ Sbjct: 477 SGGDPEDPRTGPPDGYYPEEPGYPQETAEKVDILYGFERKVIEILLLYGSVEEDFEDVFL 536 Query: 506 -----------------------------ADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ N Q ++S L + + + F ++ Sbjct: 537 KADEEGNVKEVSEKRRYKVYEKIYLSLQEDEVELSNALFQNIFSGLIDYYNQNETFSLDK 596 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFRLLSR 593 L E+ L + +Q + R+ L+S+ Sbjct: 597 YLMHLNPDFAQEVTNILMEDEKVTIHNWEGQNIFPKHKNVTIEQNVSDTIFSMRWFLVSK 656 Query: 594 QKEEIEKQIAQVTAKGEAEKTA 615 +++ + + +E Sbjct: 657 IIHDLKHSLISDPQEDNSELLM 678 >gi|328676045|gb|AEB28720.1| DNA primase [Francisella cf. novicida 3523] Length = 605 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 162/596 (27%), Positives = 281/596 (47%), Gaps = 31/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNNFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF CH GD L+F+ ++ FIE+V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCHASGDALTFVKSINNLEFIEAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS+ F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSNLARFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SEE +++ GL I D + YDRFR R++FPIR+ +G VIA+GGR + + VKY+NSPE Sbjct: 179 SEEILVDTGLAIKNDKG-SLYDRFRGRIMFPIRNIQGNVIAYGGRVIDDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K + ++ +++VEGYMDV+ L Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE-----RKKQLPHLTNQSLVVVEGYMDVIGLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA ++ ++L++ + ++LCFDGD G +AA + I ++L L ++ + L +G+D Sbjct: 293 GTAFSQNHAKILFRETNSVILCFDGDKAGQKAALRTIKILLPILDGNKKLKILTLPKGDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + D + + R + +AE+ +LKN + + D Sbjct: 353 PDDYIKQYGLERFHAALDNSLAVADFVIDNLIQGRDLTKAESKAEVLENLKNFLLDVADN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ ++ + +K + + ++ K Sbjct: 413 IYSESITATIADKIGIKVEQLKNLL-------------KIRKQNLLNVTKQQNIQQKKLT 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L L + A + + ++ + + E E Sbjct: 460 KNLLLEEVILAELFVNLADFRLLQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L + + + ++ + RL Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGINNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575 >gi|150026110|ref|YP_001296936.1| DNA primase [Flavobacterium psychrophilum JIP02/86] gi|149772651|emb|CAL44134.1| DNA primase [Flavobacterium psychrophilum JIP02/86] Length = 661 Score = 313 bits (801), Expect = 6e-83, Method: Composition-based stats. Identities = 153/658 (23%), Positives = 274/658 (41%), Gaps = 61/658 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + +IG +V R +N Y PF +E++PSF + +KG + Sbjct: 2 ISKATIDTVYETARVEEVIGDFVQLKRAGSN-----YKGLSPFSEERSPSFMVSPAKGIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 FS G+ ++F+ S+ E+++ LA + + + E+KE+ + + + Sbjct: 57 KDFSSGKGGNAIAFIMEHEHFSYPEAIRYLAKKYNIEIEETEQSQEEKEQASEKESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF +++ N + + Y ERG + I+ F LGY+P++ + + +G+ Sbjct: 117 SEFAAKFFQNTMMNTDEGKSVGLSYFKERGFTNETIKKFGLGYSPEAWDAFTKEGLGQGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + + GL I +DRF+ R++FPI+S G+V+ FGGR L+ + KYLNSP Sbjct: 177 KLDYLDKVGLTILR-EDGKHFDRFKARVMFPIQSMSGRVLGFGGRILTNDKKAAKYLNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK K LY + A + K L EGY DV+ + QAG++NVVSS Sbjct: 236 ESEIYHKSKVLYGIYHAKQAIAKQ----------DNCFLCEGYTDVIQMQQAGIENVVSS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ +L+ I + FDGD GLRA+ + IDL L G V G+ Sbjct: 286 SGTALTPDQIRLINRLTKNITVLFDGDAAGLRASIRGIDL---ILEEGMNVKVCTFPEGD 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + + + + P ++AEL + N I+ I D Sbjct: 343 DPDSFAKKTPLNELLLYLENNAMDFIQFKASLLMKDAKHDPIKKAELIRDMVNSISKIPD 402 Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + R Y Q + LF K + + + + Sbjct: 403 RIKREIYIQECSRIMDISEEVLFNTLAQLVQKDISEVGKKQKQEQKNQVFEVYKNENTAV 462 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQEL---------------------------- 505 G E ++ L+ + I ++ + Sbjct: 463 GAKVDVLYELELKIIEILLLYGNIEEDFEDFVFKANEEGELLEIKEVNRYKVFQRIYLSL 522 Query: 506 --ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 ++ + +++ L + F E + F E+ RL E+ + + + Sbjct: 523 QEDEVELGTPIFKDIYNNLIAYFNENENFEIEQYLMRLSPELAQEVTTIIMDDEKTSLHN 582 Query: 564 SATTEANIVDVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + + Q + L R+ L+++ EEI+ ++ T E ++++ Sbjct: 583 WEAQQIYVKQKDKTISQYVSETILTLRWFLVNKIIEEIKSNLSNATDSDNYENLSMVM 640 >gi|306820485|ref|ZP_07454119.1| DNA primase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551471|gb|EFM39428.1| DNA primase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 585 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 149/612 (24%), Positives = 280/612 (45%), Gaps = 47/612 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 F++++ I ++I ++VD + N Y CPFH+EKTPSF N+SK + Sbjct: 7 LDERFVEEVKNANNIVDVISKFVDLKKNGDN-----YKGLCPFHNEKTPSFVVNESKQIF 61 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIR 119 CF C G+ +SFL SF E+V+ L A +P EK + + + + Sbjct: 62 KCFGCGEGGNIISFLMKKENMSFNETVKYLCENANIPYKQTHTFTEKDKMELDEKKKMYK 121 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L ++ +L+N D YL RGID ++ F LGY D S +L++ G++ Sbjct: 122 LHVDLAKYYFQNLQNNLD-NSKSYLLNRGIDERTMKKFGLGYE-DRVSSSINYLKELGYT 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +E +I + + + ++ Y F R+++PI R +VIAFGGRT++ GE+ KYLNSPE+ Sbjct: 180 KEDMIHSMVFREKNDRM--YSIFFGRIMYPIIDRRNRVIAFGGRTMNAGETPKYLNSPES 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F K LY A Y K +ILVEGYMDV+SL + G+ ++SLG Sbjct: 238 MIFKKKNELYGLNLANKYNSK------------RLILVEGYMDVISLIKNGIAGGIASLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+L + + ++ + + ++ +C+D D G +A +A+D+ G N + + +DP Sbjct: 286 TSLAKEHVEVIKRQNKKVFICYDSDTAGRKATLRALDM---FKEEGITANVIRIGDYKDP 342 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F + F +LI ++ + + N + +R E I KD+ Sbjct: 343 DEFFSSKKSSDFMRLIKNAVSPLTFIIDDMGLNYDLSVHSQRLEFINLACEKIVECKDEV 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEH-------SGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + Y + + + + + + R ++ + ++++ V Sbjct: 403 EKEYQIKRLSQMTDTSIKAIGVKVYGEFFSPKRFKEQGQNETRFFKRQDIPKNVVKAKDV 462 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 +K + E L + ++ +P+ ++ L + ++L++++ F E+ Sbjct: 463 VLVSNKISNPNEEKLKIMIMENPSFIKFVDDILELEDLNGDDLRQIYFQRFEY--EKMSI 520 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFRLL 591 E +LL++L + V+ + + S E +I + + ++ L K+ L Sbjct: 521 DGET----------EKLLRKLAKSVKFSSIQSQIEEIDILLKDERDIEKTLNNAKKRLEL 570 Query: 592 SRQKEEIEKQIA 603 ++ EI++ + Sbjct: 571 LKKMSEIKESLK 582 >gi|21910054|ref|NP_664322.1| DNA primase [Streptococcus pyogenes MGAS315] gi|21904245|gb|AAM79125.1| putative DNA primase [Streptococcus pyogenes MGAS315] Length = 589 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 156/631 (24%), Positives = 271/631 (42%), Gaps = 52/631 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + + I ++IG+ V R Y CPFH EKTPSF+ + + F++CF C Sbjct: 2 ISQVKNSVNIVDVIGEVVKLSRSGR-----HYLGLCPFHKEKTPSFNVVEDRQFFHCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQTDLIRLIEVA 124 GD F+ F+ESVQ +A G+ L P + + L+ L E A Sbjct: 57 GKSGDVFKFIEEYRQVPFLESVQIIADKTGMSLNISPSQAVIASQHKHPNHALMTLHEDA 116 Query: 125 TDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 F+H L + YL +RG+D IE F +G APD L + L +K + E ++ Sbjct: 117 AKFYHAVLMTTTIGQEARKYLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKK-YEEGQL 175 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYLNSPET 239 + +GL D S T YD FRNR++FP+ RG +IAF GR + + KY NS T Sbjct: 176 VASGLFNLSDQSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADTEKRQAKYKNSRGT 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +LF+K LY+ A + K + + L+EG+MDV++ ++G +N V+S+G Sbjct: 236 VLFNKSYELYHLDKARPVIAK----------THEVFLMEGFMDVIAAYRSGYENAVASMG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT+ + L +++ ++VL +DGDD G A K+++L+ ++ V + DP Sbjct: 286 TALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVE-----IVRIPNKMDP 340 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F++ + AF L+ +S + + + + + + I Sbjct: 341 DEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVYVEKMAPLIAQSPSIT 400 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ Y I D L + + R + R L+ +L K Sbjct: 401 AQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQKRQGQIAQAVSNLV--TLPMPKSLTA 458 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E+ L+ L++H +L E D +D + L+ L+ L Sbjct: 459 IAKTESHLMHRLLHHDYLLNEFRHR-DDFYFDTSTLELLYQRLKQQG------------- 504 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEI 598 + E+ ++++R + + E + ++ L KR +LL R + Sbjct: 505 HITSYDLSEMSEEVNRAYYNVLEENLPKEVALGEIDD------ILSKRAKLLAERDLHKQ 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 K++ + + KG + ++ ++ Sbjct: 559 GKKVRESSNKGYHQAALEVLEHFIAQKRKME 589 >gi|223985701|ref|ZP_03635748.1| hypothetical protein HOLDEFILI_03054 [Holdemania filiformis DSM 12042] gi|223962312|gb|EEF66777.1| hypothetical protein HOLDEFILI_03054 [Holdemania filiformis DSM 12042] Length = 589 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 144/637 (22%), Positives = 262/637 (41%), Gaps = 54/637 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I + I+ +IG YV ++ CPFHD+ PS + K Sbjct: 1 MRLSDEEITAVRNSADIAEVIGHYVPLVKKGR-----SMACVCPFHDDHDPSLSISQDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLI 118 Y CF C G+ +F+ SF E+V ++A I+G L DP K + + L Sbjct: 56 IYKCFVCGAGGNVFTFVQNYEKVSFPEAVAKVAEISGYKLS-FDPSAFKTPVDPRKDALY 114 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +++ + H+ L + YL RGID IE F++G+ L L+ KG+ Sbjct: 115 KVLAETIRYTHYQLGAQAGTPVREYLANRGIDEATIEKFEIGWNGPG-DELLRFLQAKGY 173 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 +E+ ++ A ++ ++ +D F +R+ FPI S G I F R++ KY+N+ E Sbjct: 174 NEQDMVAANVVRLNES--GLHDVFASRITFPIHDSLGNPIGFTARSMDPEAQSKYINTTE 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ KG ++N+ A ++ R ++L EG DVL+ +AG+ NVV++L Sbjct: 232 TDVYVKGHTVFNYHRAKQPSRQEGR----------VLLCEGVTDVLAFSRAGMDNVVATL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T+ QLRLL + S + C+DGD G A YKA L G V V G D Sbjct: 282 GTACTKEQLRLLRQCSLHLTFCYDGDKAGQNATYKAAKLAR---EAGFEVGIVSNPTGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +R +G ++ + L ++ +++ + E+ E + +++ I + D+ Sbjct: 339 PDEILRQHGAEELRAMVRKELTWMEFVFQYLSTRYDLENYSEKKEFTLKVEDEIKQLSDE 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R ++ + + + N+ K RL S K Sbjct: 399 FDRQNFAHQLEQLTG-----FHLDLGAAPAPKPDNSGAGRVKTVPIRLNPSRDGKTN--- 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E +L ++ ++ ++L + N E Q+L + + Sbjct: 451 ----AEHLILALMLTRREAVEMFKEKLGFLL--NEENQQLAMMILDYSRSHPQLQIADFI 504 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E + + L + T E +R + +L + ++ Sbjct: 505 STIDEETLRQKVLDL----SEWECPQFTPEVMDGAIR---------RLQRCMLEERINDL 551 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 ++QI +++ E A L++ ++ ++ +E Sbjct: 552 KQQILRIS---NPESQAALLNERMQLQRELRGYLDEE 585 >gi|224542126|ref|ZP_03682665.1| hypothetical protein CATMIT_01301 [Catenibacterium mitsuokai DSM 15897] gi|224524963|gb|EEF94068.1| hypothetical protein CATMIT_01301 [Catenibacterium mitsuokai DSM 15897] Length = 588 Score = 312 bits (800), Expect = 8e-83, Method: Composition-based stats. Identities = 147/629 (23%), Positives = 280/629 (44%), Gaps = 46/629 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I +++GQY++ ++ N Y A CPFHD+ PS + S+ Sbjct: 3 RLSQEKIDEIRQSVDIVDVMGQYLELHKKGKN-----YMAICPFHDDNHPSLSISQSRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 Y CF C G+ +F+ L F+E+V ++A V + ++ ++ K ++ L Sbjct: 58 YKCFVCGNGGNVFTFIQEYLKVPFVEAVMKVAEFGHVDMSGYSLEKRVVKVDEALAPLYD 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A + + L K+ YL RG D I+MF +GYAP+ L E +++G++ Sbjct: 118 MHAFALKLYMYYLYTQSGKQALDYLRHRGFDDDLIKMFGIGYAPEKS-ILHERFQKEGYT 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT-LSKGESVKYLNSPE 238 E +++GL+ + YDRF +R++FP+ G+V+ F GR + ++ KY+NSPE Sbjct: 177 EVAQVKSGLV---LENERHYDRFHDRVMFPLYDEFGKVVGFSGRVYKVQDKNSKYMNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F KGK LYN+ A ++ + F+ + EG+MDV+++ +A N ++ + Sbjct: 234 SDIFIKGKTLYNYHRAKEAVR----------QAGFVYINEGFMDVIAMHRAHHDNCIALM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ LR+L +++ I LC DGD G AA K+ DL G V VLL G D Sbjct: 284 GTALTKDHLRMLKRMTRTIHLCLDGDMAGQAAAMKSSDL---LTSQGFEVKIVLLPDGRD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + G + ++ ++L +D + E ++R L + I I+D+ Sbjct: 341 PDEILSTEGIEGLDAVLKDTLSPIDFMMAFECSRLDLRNYEDRKTLLVKACEKIAKIEDR 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R +Y + + + + + SQ +++ + + Sbjct: 401 IDRGHYIAKLSSLTDFPKEIIEEQLLNSSAILEHREQF------SQNRIETIQDQRPILD 454 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K +L E LL ++N + + + N+ + L +++ + K + Sbjct: 455 KYTLAEKNLLFYMLNDRQVSDIYEAKAGFMH--NDTYRALAAYIRDYYRTHKTMDVANLI 512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ L+ L + E V Y + + + +++E+ Sbjct: 513 DKIGSS-HSALVNALTDIAECSLPLPYQKE-----VIDDYIARITENTK----NIREQEL 562 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++Q V A A ++ L ++ + Sbjct: 563 QQQFKDVLA---PSAKAEILQKLIDLKKE 588 >gi|281491018|ref|YP_003352998.1| DNA primase [Lactococcus lactis subsp. lactis KF147] gi|281374776|gb|ADA64296.1| DNA primase [Lactococcus lactis subsp. lactis KF147] Length = 637 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 160/673 (23%), Positives = 269/673 (39%), Gaps = 84/673 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGF Sbjct: 3 SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD + FL F+++V+ LA AGV L + D + E+K L + Sbjct: 58 YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + +R YL+ERGI I+ F +G AP+ + ++L K Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 ++ I A + ++ +D F NR++FPI + GQ I F GR + + KY+N+ Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K L+N A + K + L+EG+MDV++ +AG+ NVV+S+ Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE +R L +++ + VL +DGD G A YKAIDL I + V V + G D Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + + YG L+ + + + + I + Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469 + Y + + + L + + R H + L +S Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLEASSLTESFTDENDYSS 458 Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495 V+ + E LL +I H Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSELARVIQPSVQVPKLSRSEKAEEMLLHRMIYHS 518 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++L++ Q+ + R+ + Q L+ + + + + + L + + L Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q+ L + I D+ + + + EE+ +Q+A G E+ Sbjct: 573 QIISLDLPDTASSQEINDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624 Query: 616 ILISILHEVHIQI 628 L + ++ Sbjct: 625 ELTLQIINQKKKL 637 >gi|283769574|ref|ZP_06342470.1| DNA primase [Bulleidia extructa W1219] gi|283103842|gb|EFC05228.1| DNA primase [Bulleidia extructa W1219] Length = 578 Score = 312 bits (800), Expect = 9e-83, Method: Composition-based stats. Identities = 151/634 (23%), Positives = 269/634 (42%), Gaps = 62/634 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P++ I D+ I ++I Y+ + Y A CPFH++ PS K Sbjct: 3 NIPKNIINDIRTKANIVDVIRHYIPVSEKGNG-----YVAVCPFHNDHDPSLKIAPDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G F+ SF E+V+++ + GV + V K ++ + ++ Sbjct: 58 YHCFVCQAGGSVFQFVQDFEKVSFPEAVEKVGELVGVHVQSVPKKEVVEDPQVKRIKEVL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 AT +F + LK + YLD RGID F +GY P L +L+ KG+ EE Sbjct: 118 SDATSYFSYILKTTDGAKAKEYLDSRGIDEETALKFGVGYNP--YQKLYPYLKAKGYQEE 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++ +A L+ D F+NR+ F I +GQ I + R++ KY+N+ T++ Sbjct: 176 EMSQANLIRYYHGHFE--DVFQNRITFAIHDRQGQSIGYTARSMDPKSESKYINTDNTLV 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKG +YN+ A +++ + + L EG MDV++L QAG++NVV +LGTA Sbjct: 234 FHKGNVIYNYHRAKTPARRAGK----------VYLCEGVMDVIALTQAGIENVVCTLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T+ Q+RLL ++P +V+ +DGD G A+YK L G V DPD Sbjct: 284 CTDDQIRLLATMAPVLVIAYDGDHAGQNASYKVAKLAQSI---GLECRIVKNIDHLDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R G+ A EK + + ++ + ++ + + ER ++ + I ++KD+ R Sbjct: 341 IYRQKGQEALEKFLKQEESFMEFFMDYQLKSANLSNYSERKKVGQEIAFEIQNLKDEVDR 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y+ + ++L F K + S Sbjct: 401 RYFQHLLEEKLGLNF-----------------------KVSVNKTRTKSTSIKTKVDGVE 437 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + E +L +I +P +Q +EL + + + L + ++ P E+ + Sbjct: 438 VAEYEILAIMIQYPKAIQIFDEELGFL--TDATRNNVALTLVNRLHRRQEIQPIELLESA 495 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + W+ E N+ D ++ +AL + + L Q +++ Sbjct: 496 QSDE-------------ERTCWTRLIEMNVKDYQEEELRALFDRIKMKQLDDQVKQLYDS 542 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + +L+ EV ++ +++S E Sbjct: 543 L--SNPSLDEATRKLLLQKYSEVKRELGRLKSSE 574 >gi|325955566|ref|YP_004239226.1| DNA primase [Weeksella virosa DSM 16922] gi|323438184|gb|ADX68648.1| DNA primase [Weeksella virosa DSM 16922] Length = 643 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 153/656 (23%), Positives = 280/656 (42%), Gaps = 50/656 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I ++ + +IG +V R N PF +EKTPSF + K + Sbjct: 2 ITQKTIDEIFDTARVEEVIGDFVQLKRAGANL-----KGLSPFANEKTPSFVVSPGKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV---VDPKIEKKEKIQTDLIR 119 FS G+ ++FL + S+ E+++ LA + + P+ + K + L Sbjct: 57 KDFSSGRGGNVVTFLMEIEQFSYPEALRWLAKKYNIEVEEDRSFAPENNEAIKNKESLFL 116 Query: 120 LIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E A FF L + Y ERG IE F+LGY+P + + +KG Sbjct: 117 ITEAANKFFQQQLHQTEEGISIGLSYFKERGFTKQIIEKFQLGYSPSAWDAFANFAEEKG 176 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 +++ I ++GL+I +DRFR R+IFPI S G+ + FGGR L KYLN Sbjct: 177 YAKNIIEQSGLVI--YKEDKKFDRFRERVIFPIFSYSGRTLGFGGRVLRNDRKNAAKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE ++HK K LY + + + + + +LVEGY DVL+L QAG++NVV Sbjct: 235 SPENEIYHKSKVLYGLYQSKQSIIRQ----------NQCLLVEGYTDVLALHQAGIENVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 SS GTALT+ Q+ L+ +L+P I + +DGD G++A+++ IDL L V +L Sbjct: 285 SSSGTALTKEQILLIKRLTPNITILYDGDAAGIKASFRGIDL---ILEQEMNVRVLLFPD 341 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF + + + + I E+ + + N P ++AEL ++ I I Sbjct: 342 GQDPDSFAKNHTEEEIKNFIDENATDFIQFKAKILMEDAENDPIKKAELTRNIVESIALI 401 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + + Y + +Q + E + Y + + +++K S L + Sbjct: 402 PNLIQQEIYIEETAKLMQVSNKVLFKELAQYTKKINQ-QPTKEEKKDSAELTIQKSNLNE 460 Query: 476 LSKKPSLREAALLLTLINHPA----------------ILQEQYQELA--DIRYDNNELQK 517 + + E ++ ++ +++E +L ++++ N QK Sbjct: 461 VVDPIVIVEEKIIQLILQFGDKVIQLHDENNEQYETTVIEEVLDQLEADNLQFQNPFYQK 520 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + + + + + + + E + L + W + I D+ Sbjct: 521 ILDDVIVGYEKDELRTSDFFIKIMDEEITNFTSQALISPYHVSKNWKEKQQIYIKDIEHN 580 Query: 578 YQQALA---LYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIH 629 + + L + + + +++ +GE + I L ++ ++ Sbjct: 581 IDKEVKDTLLNFKSLYVQNEIKKLLPLTQSSDFEGEVRIEILEKIMRLTKLKNYLN 636 >gi|298246438|ref|ZP_06970244.1| DNA primase [Ktedonobacter racemifer DSM 44963] gi|297553919|gb|EFH87784.1| DNA primase [Ktedonobacter racemifer DSM 44963] Length = 728 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 171/745 (22%), Positives = 278/745 (37%), Gaps = 142/745 (19%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+ + + ++ I V + CPFH+E+TPSF+ + CF Sbjct: 3 SIIETIKAKVDVAEEISLVVALHKSGK-----TLKGLCPFHNERTPSFYVFPETQTWRCF 57 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDLIRLI 121 C+ GD SF+ G F E+++ LA AGV L + + + + L +L Sbjct: 58 GCNEGGDVFSFVQKQQGLEFRETLEYLAQKAGVALEEQESHNAEASRETSAAKERLRQLN 117 Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E A +FHH L++ + Y+ RGI + + F LGY PD L +L +G+SE Sbjct: 118 EDALLWFHHMLLRSREAEEARAYIQSRGISADTVITFGLGYVPDQWDGLSRYLLSRGYSE 177 Query: 181 EKIIEAGLLIDGDN---------------SATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 +++ GL + + YD FRNR+IFPIR RG+VI FGGR L Sbjct: 178 RELVVGGLAREREMGSSDRSGRESGEGNTENGIYDYFRNRIIFPIRDIRGRVIGFGGRAL 237 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 KYLNSP+T+LF K LY A + ++ + +I+VEGY+D + Sbjct: 238 -GDGKPKYLNSPQTLLFEKNTVLYALDMARDAIK----------QARQVIIVEGYVDAII 286 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID--------- 336 Q G + V+ +G+A+TE ++ L K++ ++ L D D G A I Sbjct: 287 AHQYGTRQTVACIGSAITEKHIQQLKKMTKQVTLALDPDAAGSAATEHGIQEALKGFDRT 346 Query: 337 -----------------------------------------LVLCHLIPGNRVNFVLLSR 355 ++ +N + L Sbjct: 347 VVPVPLPAGAADRQWPREGRKGGNNVHEQKGSYAGKQQARGIIRLEEQVDAEINVLQLPL 406 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 GEDPD FIR A+ + LPLVD + +T + P + E L I I Sbjct: 407 GEDPDEFIRRDHT-AWLYAVGHPLPLVDYFFVVKTADLDIREPVGKTEAAKRLLPVIGMI 465 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465 D+ R Y + + + + E R + + P + Sbjct: 466 SDRIKRDAYIRKLARLIAIDERSLYAELQHTLREQRATSVTATFSAPLDKRNTDSGKGFG 525 Query: 466 -------LMQSSLVKGKLSKKPSLREAA-----------------------------LLL 489 L + + REA L+ Sbjct: 526 KEQAGSVLGAPPIGEQGHPGSGQKREARTNGLVGAQRHGTSGILDRGEANRLKWEDYLIG 585 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGE 548 L+ +P + Y + D + + ++L+ L+S + + + Q + Sbjct: 586 LLLQNPGLSPYVYGIIDDGDFAGTDTRELYHILYSVYQQRASSPSLQSFDQYVP----AS 641 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L L+R + + A + + Q KR R L + E++ I + TA Sbjct: 642 LWDALNRARECVDIETPRDGAG---LVKEAVQCATRLKRAR-LVQLNTELQFLIREATAA 697 Query: 609 GEAEKTAILISILHEVHIQIHQIES 633 G+A+ L L E+H Q+H I+S Sbjct: 698 GDAQTRRQLQQRLLEIHRQLHTIDS 722 >gi|320108952|ref|YP_004184542.1| DNA primase [Terriglobus saanensis SP1PR4] gi|319927473|gb|ADV84548.1| DNA primase [Terriglobus saanensis SP1PR4] Length = 592 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 157/641 (24%), Positives = 256/641 (39%), Gaps = 65/641 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +F + + I +IG+YV + +Y CPFH EK+PSF N + ++YC Sbjct: 3 DNFAQTVKAQADIVKIIGEYVKLRKSGAQ----NYSGLCPFHKEKSPSFSVNATHSYFYC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLI 121 F CH KGD SF+ L F E+V+ +A G+PLP P+ + I+ L+ + Sbjct: 59 FGCHEKGDVFSFVQKLENIPFPEAVRVVAQKCGIPLPKREFNSPEEARDAGIRRQLLDIH 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E AT +F LK+ R YL RG+ I F++GYAPD ++R+ + + E Sbjct: 119 EAATQWFEGHLKSPEAARAREYLTSRGVPPETIAKFRIGYAPDDFNTMRDAMAKLFNDEA 178 Query: 182 KIIEAGLLIDGDNSAT-----SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYL 234 + Y RFR R+ FPI + +G+VIAF R L E KY+ Sbjct: 179 MRASGLFSSKEQDDNGRPRGSLYARFRKRITFPIANEQGRVIAFTARALDSDEKSGAKYM 238 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET L+ KG L+N A ++ F +LVEG MD +S+ AGVQ V Sbjct: 239 NSPETPLYTKGNVLFNLDKAKAAIRAQ----------DFALLVEGQMDCISVFMAGVQPV 288 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 +++ GTA TE Q+RLL + + R+V+ FD D G AA K++ L V V L Sbjct: 289 IATSGTAFTEAQVRLLSRFTKRVVVNFDPDTAGANAAEKSLSL---LTEEDFEVKVVTLE 345 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD ++R +G A+ + + P + L +R T + + + +L I Sbjct: 346 GGLDPDRYVREHGIKAYADALRTAKPHAEYLIERARVLYPQKTAEAKVKAANYLLPHIRR 405 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + R + +L E + V+ Sbjct: 406 LPSAIQRQDFVTNAAQKLGIDDALLREELRQAAA------------------ARVESVRS 447 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 E LL L+ P + + + + Sbjct: 448 SGRDALHETERILLRALVR-PE--------------TDPARIHAATEISMHPEWVEGLTS 492 Query: 535 EEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + +RL + + + A + E + + + AL +R R+ Sbjct: 493 GTLLERLANSPVTDNPLDAASGAEEHLILARVLENEAETDSNALVLDVRNALNTLERGRM 552 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 R++ E+ +A + ++E + ++ + + Sbjct: 553 -ERRQRELRALMADAERRNDSEAGKQFAAEAAQIARSLRLL 592 >gi|229496583|ref|ZP_04390297.1| putative DNA primase [Porphyromonas endodontalis ATCC 35406] gi|229316480|gb|EEN82399.1| putative DNA primase [Porphyromonas endodontalis ATCC 35406] Length = 679 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 166/684 (24%), Positives = 284/684 (41%), Gaps = 73/684 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I +++ +V R DY CPFH ++ PSFH + SK Sbjct: 2 IDEVTKQKIIDTAHIVDVVSDFVSLRRAG-----VDYIGLCPFHADRRPSFHVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 CFSC G +SFL L +F E+++ LA G+PL P+ ++ Q + + Sbjct: 57 KCFSCGEGGTPVSFLMKLEKMTFPEALRYLARKYGIPLEEREESPEERERRNQQESMYLV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++F L + R Y RG+ IE F+LGYAP S +L Q G+ Sbjct: 117 QKFAAEYFGKQLLEGDEGRSIALSYFHSRGVTEEVIEKFQLGYAPSSHNALLTAATQAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSP 237 + + + GL + + DRFR R++FP+ S G+++AFGGR + + KY+NSP Sbjct: 177 NAKYLYATGLCFEPSEGRSGGDRFRERIMFPVHSVSGRIVAFGGRIMGKSDKMAKYINSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E I++ K + LY + A + + + LVEGYMDV+++ QAG++NVV+S Sbjct: 237 ENIIYSKSRELYGLYFAKKAIAQK----------DKVYLVEGYMDVIAMHQAGIENVVAS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q+RL+ + S I + +DGD G++AA + IDL L G + ++L GE Sbjct: 287 SGTALTREQIRLIRRFSKNITVLYDGDAAGIKAAIRGIDL---LLEAGMHIRVLVLPAGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R F I E ++ ++P RA + L + I I D Sbjct: 344 DPDSFSRSRTIDEFNDYISEHEVDFITFKTGLFQDDMASSPGRRAAVINDLVHSIGLIPD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGY------GRYWKKNARHRDQKGPSQRLMQSSL 471 R Y+Q++ L + + + GR ++ AR R +R Sbjct: 404 TIERSVYAQSVAQTLHIDEELLLRQVKIARSNHLMGRATEEQARSRQAALQEERRRNEEK 463 Query: 472 VKGKLSK-------------------KPSLREAALLLTLINHPA---------------- 496 + + P+ +E LL +I + Sbjct: 464 EHEEDTPLSETEDEDLPSDTHTLPDIPPTRQEIELLRLIIRYGERLIPIDNDDGTQSDMP 523 Query: 497 ILQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGEL 549 + Y+ +I QK+ + + F P R+ + L Sbjct: 524 LALYIYEWFGAEEIEKSTPLFQKIVNESIEQLSTSESFRPAHYFANHPEPRIADLTLDLL 583 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY--KRFRLLSRQKEEIEKQIAQVTA 607 + E N ++ ++L R + ++ E+ + ++ Sbjct: 584 SDRYQLSRAQRQALGIYNEDNSPELDTIINESLHAIDALRVECILQEIEQCRQSLSDAQQ 643 Query: 608 KGEAEKTAILISILHEVHIQIHQI 631 G+ + L+ ++E++++ +I Sbjct: 644 HGDGSQIMTLLQRINELNLKKKEI 667 >gi|67459750|ref|YP_247374.1| DNA primase [Rickettsia felis URRWXCal2] gi|75535860|sp|Q4UJT0|PRIM_RICFE RecName: Full=DNA primase gi|67005283|gb|AAY62209.1| DNA primase [Rickettsia felis URRWXCal2] Length = 595 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 171/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF +DSK Sbjct: 1 MRVAPEFYELLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL ERGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILNYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPNGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LK+ + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKDYCSKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + ++++ Q N + +K ++ + ++ + Sbjct: 399 KASYYRFFKEQIWQ------------------NLVTKQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EMLEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q +E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQ-QEY 553 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I + EK + + ++ ++ + Sbjct: 554 SITINSTDN-HDFEKVLLYKKEILKIANELQVL 585 >gi|302335782|ref|YP_003800989.1| DNA primase [Olsenella uli DSM 7084] gi|301319622|gb|ADK68109.1| DNA primase [Olsenella uli DSM 7084] Length = 646 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 147/671 (21%), Positives = 260/671 (38%), Gaps = 78/671 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + I L+G+ V+ R +GD+W CCPFH EK+PSFH N + G + Sbjct: 2 ITDEDRERVRQATDIVRLVGETVELRER-----RGDFWGCCPFHHEKSPSFHVNPATGLW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C GD +++ G F ++++ LA AG+ L + + L+ + Sbjct: 57 KCFGCGEGGDLFAYVMKREGLDFPDAIRYLADRAGIEL-QEERGAAGHGPKRNRLVECLA 115 Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F+ L ++ YL RG S + LG+AP +L HL +GF+ Sbjct: 116 EAEAFYTTQLLRGRSEGAGVARGYLAGRGFGSAVCRRWGLGFAP-GHGALAAHLLGRGFT 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++++ A L ++G + DRF +R++FPI G+ I FGGR L KYLN+ ET Sbjct: 175 RQEMVAADLALEGRSGVR--DRFFDRVMFPIHDELGRSIGFGGRVL-ADAKPKYLNTKET 231 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKGK+L+ F A + + ++ I+ EGY DV+S+ +AG NVV++LG Sbjct: 232 AVFHKGKHLFAFDRAKDSM----------VATGEAIVCEGYTDVISMHEAGFTNVVAALG 281 Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 TALT ++++ RIV FDGD G +AA +A+ V G + V L +D Sbjct: 282 TALTLDHVKMIERFAKSRIVCMFDGDAAGQKAAERAVQFVD---KTGADLLCVTLPDNQD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P F+ G A +I + PL++ ++ + + P R + + + +K Sbjct: 339 PAEFLADKGAGALRPIIDAARPLMEFVFDKRMATYDLSVPGRRVQAMDDMAALLAPLKGS 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L Y+ + D L + + + L Sbjct: 399 ILLDGYATQLADMLGADLGEVKRLVREKPVASPRAGGRSQGMRRADALAVPPPPPSSEHV 458 Query: 479 KPS--------------------------------------LREAALLLTLINHPAILQE 500 + E LL L +HP ++ Sbjct: 459 AIHASGGEQPYDHQPFDDGGEATGAPVPSLAMLSSDERMRVVAERELLSMLASHPDAIRP 518 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + +A + + + + + + + ++ + Sbjct: 519 HAERIAGFTWTDARYESMAWAMLATPEGTPPADVVAAASGVVAD---------APRILAS 569 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 G T+ + D + L+ + R+ EI+ ++ + L Sbjct: 570 GSLEVTSRLSNADKVSFLLDTVELWSK----RREVREIKARLRSASTSTPDAAAIGLFQR 625 Query: 621 LHEVHIQIHQI 631 + +I ++ Sbjct: 626 ATGLQRRIGEL 636 >gi|327398657|ref|YP_004339526.1| DNA primase [Hippea maritima DSM 10411] gi|327181286|gb|AEA33467.1| DNA primase [Hippea maritima DSM 10411] Length = 562 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 158/622 (25%), Positives = 273/622 (43%), Gaps = 70/622 (11%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D ++++ + I + I YV +R +N Y+ CPFH EKTPSF N GFY+C Sbjct: 2 KDIVEEIKKRVDIVDFISGYVSLKKRGSN-----YFGLCPFHHEKTPSFSVNPKGGFYHC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD ++FL + F E+++ LA +P+ + K+ L + +A Sbjct: 57 FGCGESGDVITFLMKIENLDFKEAIRELAKRYNIPIHI------KERSKNDALFEIHSIA 110 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 +F LK +K YL R I+ AIE+FK+G+AP+S + K ++ Sbjct: 111 EKYFFEKLK--LNKTALDYLKNRQINDDAIELFKIGFAPESSELEKIL---KKEGFKEKE 165 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFH 243 I S ++RF NR+IFPI++ GQ IAFGGR L+ ++ KYLNSPET +F Sbjct: 166 LINSGIFIQGSRGVFNRFSNRIIFPIKNEHGQTIAFGGRILNDDKTKAKYLNSPETPIFS 225 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K K L+ A + ++K + +I+ EGYMD L L +G++N ++LGTAL+ Sbjct: 226 KQKVLFGLNLAKDEIRK----------TKEVIVTEGYMDCLRLQISGIKNSTATLGTALS 275 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + + +L +++ +I + +D DD G RA ++ L + V+L +GEDPDSFI Sbjct: 276 RFHINILKRMADKIYMNYDADDAGFRAILRSA---PTILSSEMKPFVVILDKGEDPDSFI 332 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R K A+ K + + + P E+ LK I +++ L+ Sbjct: 333 RNNSKEAYIKKLSSAKDYFSYIIDFIKNKYDIEHPSEKMRAIEELKPIILSVQEPILKAA 392 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y+ ++ + + + + + + Sbjct: 393 YTSKASRVFNVSEDAFLAKTASF----------------------------EFLSSITKQ 424 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQK-LWSFLFSDFVEQKYFLPEEIHQRLC 542 EA LL ++ ++ ++L D + + LQK L+ ++ + F E + L Sbjct: 425 EA-LLSIILRDIELMA-WIEDLDDFKDEFEGLQKELYLNAVRFYLSGEEFSIEAFEKNLS 482 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + +++ + T+ N R+ L + L +Q I+++I Sbjct: 483 DS---------QKKLFYKLISLPQTDINERYQRRKVLLYLLAQFKLDKLKKQLRIIQQKI 533 Query: 603 AQVTAKGEAEKTAILISILHEV 624 + E+ S + EV Sbjct: 534 QENPKSEFFEEYNKTFSEIKEV 555 >gi|298492187|ref|YP_003722364.1| DNA primase ['Nostoc azollae' 0708] gi|298234105|gb|ADI65241.1| DNA primase ['Nostoc azollae' 0708] Length = 636 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 152/652 (23%), Positives = 273/652 (41%), Gaps = 43/652 (6%) Query: 1 MNYP---RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M P D I+++ I +L+ +YV +R + CPFHDEK+PSF + Sbjct: 1 MQIPRLHPDTIEEVKHRADIVDLVSEYVVLRKRGKV-----FVGLCPFHDEKSPSFTVSP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---- 113 SK YYCF C G+ + FL L F E V LA VP+ ++P+ ++ + Sbjct: 56 SKQMYYCFGCQAAGNAIKFLMDLGKYQFTEVVLDLARRYQVPVKTLEPEQRQELQHQLSL 115 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER-GIDSHAIEMFKLGYAPDSRYSLREH 172 + L ++ F+ H+L+ + ++ YL E + I+ F LGYAP +L + Sbjct: 116 REQLYEVLASTAQFYQHALRQSLGQKGMQYLQEHRQFKTETIQQFGLGYAPAGWETLHRY 175 Query: 173 -LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + K + + + +AGL+ + YD FR+RL+ PIR +G+VIAFGGRTL E Sbjct: 176 LVEDKHYPVQLVEKAGLIKPRKDGGGYYDVFRDRLMIPIRDIQGRVIAFGGRTL-TEEQP 234 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KYLNSPET LF KGK L+ A + + K ++VEGY D ++L AG+ Sbjct: 235 KYLNSPETELFSKGKTLFALDHAKDGISKL----------DQGVVVEGYFDAIALHAAGI 284 Query: 292 QNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRV 348 N V+SLGTAL+ Q+RLL + + ++VL FD D G+ AA +AI ++ ++ Sbjct: 285 NNAVASLGTALSMEQVRLLLRYTDSKQLVLNFDADKAGINAAERAIGEIATLAYKGEVQL 344 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + + +D D ++ + +++L+ + ++ +++ ++ + Sbjct: 345 KILNIPHAKDADEYLHSHTAEEYQQLLANAPLWLNWQIAEIIKHKDLRQATAFQKVTKEI 404 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD---QKGPSQR 465 + +I + YY + L + I + + + Sbjct: 405 VKLLQNIVNSDTLNYYISYCAEILSLGDARLIPLRVENLLTQIAPTSVQSLPLRSRKQKL 464 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLF 523 + EA LL ++ P Q EL + + + + + W Sbjct: 465 KTPKLSLVTTERSLLEQAEALLLQIYLHCPEQRQVIIDELEERNLEFSLSHHRFFWQQSL 524 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQQAL 582 ++ L + L+ + + + L+ + N +R QA Sbjct: 525 EF-----PVEEVDLIFSLENK----YLELSEDLILISHLFHLNEKTNKEILRTPQVLQAT 575 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L ++ + + E EK ++ +++ +++ Q Sbjct: 576 FACMEIVLREKRYRYFMELWEKTDPLTEPEKDKFYADAMYAEKMRLQELDKQ 627 >gi|326316263|ref|YP_004233935.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373099|gb|ADX45368.1| DNA primase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 679 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 234/470 (49%), Gaps = 27/470 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114 FY+CF C G+ +SFL G F+E+VQ LA G+ +P D +++E + Q Sbjct: 56 FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + + L+ + +R Y RG+ + + LGYAP+ +L Sbjct: 116 ATLTDVLEKAGEAYRRHLRES--QRAIAYFKGRGVSGAVAKRYGLGYAPEGWRTLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + E+GL+I + YDRFR+R++FPIR+ +G+ I FGGR L + KYL Sbjct: 173 -PEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 230 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY F A ++ + ++ EGYMDV++L Q G N Sbjct: 231 NSPETPVFHKGRELYGLFEARTAIR----------EHGYALVTEGYMDVVALAQLGFPNA 280 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T + L++ + +V FDGD G RAA KA+D L + V F+ L Sbjct: 281 VATLGTACTPEHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLP 340 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R +G AF + + ++PL L + +E + RA + + + Sbjct: 341 AEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEAASEGCDLGLAEGRARMAANARPLWTA 400 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + D L+ + + L QL +++ P Sbjct: 401 LPDGALKRQLLGELAE-LAQLTSADLSDLWNQAAAQDAGRHGGGGARPQS 449 >gi|34581079|ref|ZP_00142559.1| DNA primase [Rickettsia sibirica 246] gi|28262464|gb|EAA25968.1| DNA primase [Rickettsia sibirica 246] Length = 595 Score = 312 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 173/633 (27%), Positives = 301/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF ++SK Sbjct: 1 MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL ERGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE LKN + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKILKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N +K ++ + ++ + Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E ++++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFISNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I T + EK + + ++ ++ + Sbjct: 555 I--IINSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|220904358|ref|YP_002479670.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868657|gb|ACL48992.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 580 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 169/626 (26%), Positives = 268/626 (42%), Gaps = 63/626 (10%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 RD I+ + + I +++ +YV+ R + A CPFH E PSF N+ +G +Y Sbjct: 3 SRDAIRAIKERMNIVDVVRRYVELKRNG-----PRWVAPCPFHQETKPSFSVNEDQGLFY 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------EKKEKIQTDL 117 CF CH GD F S + G F E++++LAA AG+ + ++ + + Sbjct: 58 CFGCHASGDIFDFYSRINGLDFKETLEQLAAEAGITIERGPGGARRQGEERERRSSRQQM 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +R+ E+A F +L Y+++RG+ ++ F LG+A SL + LR+ G Sbjct: 118 LRMYELAAGHFAATLNGPDGAECRTYMEKRGLSQEIVQHFGLGWAKREWQSLADSLRRAG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F IEAGLL DN +YDRFR RLIFPI+S Q+IAFGGR ++ + KY+NS Sbjct: 178 FDARMAIEAGLLGQSDNG-RAYDRFRGRLIFPIKSLSNQIIAFGGRIIADEDEAKYINSA 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ KG++LY A + R +L EGYMDVL+L Q G N V Sbjct: 237 DTPIYKKGEHLYGLAQARKGMVTKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTALT Q++ L ++ L FDGD G +AA ++ ++ L G + VL+ GE Sbjct: 287 LGTALTPEQIKRLSGFVSQLTLLFDGDRAGRKAALRSCEM---LLTRGLACSVVLMPEGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 D DS +R G AFE+L ++ + T + ++ Sbjct: 344 DIDSLLRGSGPEAFEELQAQAPDGLRFCVDVLKALAPRETVEWARNFLR-------QVEI 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +L Y + LQ R PS R++Q+ Sbjct: 397 PELVSPYVSRLAGHLQLSEADLREGLMQSRGVKNDKTRPGSNSLPSGRVLQN-------- 448 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +R+ +++ + +P L + AD+ + ++LW + Sbjct: 449 ----IRDREIMMFAVRYPHRLTNMLELGADLALQSAVARQLWDKI--------------- 489 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 G E+ LD++ ++ EA D ++L Y S QK Sbjct: 490 ----ETHGADEVFHHLDQREKNFWCKCCGPEAAPRDNGDRELESLRHYLNNYYASAQKSS 545 Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623 + + T G+ E + L E Sbjct: 546 LSAALRANTGTGDFEADMDYLRALKE 571 >gi|240142584|ref|YP_002967097.1| DNA primase [Methylobacterium extorquens AM1] gi|240012531|gb|ACS43756.1| DNA primase [Methylobacterium extorquens AM1] Length = 515 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 153/445 (34%), Positives = 228/445 (51%), Gaps = 16/445 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + ++ +P+S + G+ V R ++ PF E+TPSF ND K Sbjct: 1 MRFSPEILDEIRSRVPVSQIAGRRVALRRSGR-----EWKGLSPFQQERTPSFFVNDHKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CFS GD FL G +F E+V+ LA+ AG+ LP + + ++ Sbjct: 56 FYHCFSSGRHGDVFRFLMETEGMTFPEAVEALASEAGIDLPAGPIEGFAGRSRRHGILEA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A FF +L+ + LD R + + A + F +GYAP LR HL+ GF + Sbjct: 116 LLAAAAFFREALEGEVGEDARGLLDRRAVGTSARDRFGMGYAPLGWDRLRTHLKDLGFDD 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + EAGL+ G ++DRFR+R++ PI + G+++ FG R L + S KYLNSPET Sbjct: 176 EILAEAGLVGTGARGLAAFDRFRDRIMLPIHDASGRLVGFGARALVEDGSPKYLNSPETR 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG+ L+NF A + + +++VEGY+DV++L + Q VS +GT Sbjct: 236 VFRKGELLFNFHRARTA-----------DPAQPLVVVEGYLDVVALESSQWQRTVSPMGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QL L W+LS VL DGD G RA +AID L L+PG + L G+DPD Sbjct: 285 ALTGEQLHLAWRLSDEPVLLLDGDGAGRRATDRAIDAALPELLPGRSLRIGRLPDGQDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R + + +LPLVD LW RET +TP+ RA +E L ++ I+D + Sbjct: 345 GMVRAGRLDEIAEAVEGALPLVDALWLRETGGADASTPERRAAIESRLVAAVDRIRDPLV 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSG 445 R +Y+ I RL Sbjct: 405 RRHYADEIARRLGAPPPDRGQPQRP 429 >gi|289449853|ref|YP_003475182.1| DNA primase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184400|gb|ADC90825.1| DNA primase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 621 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 148/621 (23%), Positives = 258/621 (41%), Gaps = 40/621 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P I D+ I ++ +YV + N ++ CPFH+E TPSF K Sbjct: 6 RIPETIIADVKRSNDIVAVVEEYVTLSKKTGAN-----FFGLCPFHNEVTPSFSVAPDKQ 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLI 118 +YCF CH GD + F+S + ++ E+++ LA + +P D P K+ +Q + Sbjct: 61 IFYCFGCHRGGDVIKFISEIEKLNYPEAIRFLAKRVNITIPETDVSPYDAKRRSLQKQIE 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG- 177 + A F++ +L+ + Y RGI + F +G+AP++ +L +H K Sbjct: 121 SMYLEAAKFYYRALERDPEHTALKYCVARGITPISRRSFGIGFAPNTWDALYKHFELKHL 180 Query: 178 -FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLN 235 +E + ++GL DR RNRLIFP + G++IAFGGR ++ + KYLN Sbjct: 181 TRDKEALEKSGLFTKNKYG-GYCDRMRNRLIFPFFDTTGKIIAFGGRIMNADKAQAKYLN 239 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET ++ KG +LY A S+ I+LVEGYMDV+S AG V Sbjct: 240 SPETPIYTKGDHLYGLHLARK------------TKSNHILLVEGYMDVISAHAAGADFTV 287 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +SLGTALT+ Q R+L L I L FD D G A ++ID+ + +LL Sbjct: 288 ASLGTALTKRQARILGNLHKTITLAFDSDAAGQSAIMRSIDI---LAEEDIPTDILLLPD 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPD +IR G AF L +++ ++D EN + ++ + ++ + Sbjct: 345 GKDPDEYIRKNGAAAFLGLTQKTVSVLDFKLHLAKENAIVSGQLDKRRYQENVFAILRQE 404 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K+ L + L Q I ++ R + K V Sbjct: 405 KNSLLVDSVLNNLSIELGCRLQLLINDYQAKNRDPAFIRQLTSNKDNFPERKSGEGVAST 464 Query: 476 LSKKPSLREAA--------LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S+ E ++ ++ P ++ + + + L L+ + + Sbjct: 465 SDISNSVPETLGDIELQLNIISIILCVPDLITKAKFLPQADDFSDRSLGLLFMAIKTLAP 524 Query: 528 EQKYFLP----EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + F + + E + +++ A + +++ +R L Sbjct: 525 GKPDFTTLIGLTQAVRDFPESYYKRIMEICVNFEISADTVKKLEKNSLILMRDSAADKLN 584 Query: 584 LYKRFRLLSRQKEE-IEKQIA 603 + + + ++++I Sbjct: 585 RLAQRLHPDNKIDAGLKQEIQ 605 >gi|257066627|ref|YP_003152883.1| DNA primase [Anaerococcus prevotii DSM 20548] gi|256798507|gb|ACV29162.1| DNA primase [Anaerococcus prevotii DSM 20548] Length = 544 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 152/563 (26%), Positives = 255/563 (45%), Gaps = 56/563 (9%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ I +L I ++IG+YVD R + + CPFH+EKTPSF ++ K Sbjct: 1 MSLISDSKINQILESSNIVDIIGEYVDLKRAGS-----SFKGLCPFHNEKTPSFTVDEKK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 ++CF C GD +SF+ G S+ ES++ LA AG+ + + K +L Sbjct: 56 QLFHCFGCGAGGDVVSFIMQKEGLSYPESLKYLADKAGISIDYT--ENPGVNKKNKELYD 113 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + FF+ +L R + YL RG+ S + F LGYA DS L ++R+K +S Sbjct: 114 INKDIMMFFYKNLLTDRKAQA--YLKSRGLSSKIVNTFMLGYARDSWDDLYSYIRKKNYS 171 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+ + + GL I + YD++R+R+IFPI + G+VI FGGR G+ KYLNSPE+ Sbjct: 172 EKDLDDLGL-IKKSSKGNYYDKYRDRIIFPIINHFGKVIGFGGRA-VSGQMPKYLNSPES 229 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K NLY +K +ILVEGYMDV++L G+ V+SLG Sbjct: 230 SIFKKRYNLYGLNIYKRQKRK------------ELILVEGYMDVIALNNHGLDIAVASLG 277 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L+ + S I +C+D D+ G++A KAI++ G + ++L G DP Sbjct: 278 TALTIDQAKLMKRYSDDIYICYDQDNAGVKATEKAIEI---FHEIGINPSVIVLDDGNDP 334 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D FI+ GK AFE+ I ++ + + + + S P ER + + + IK + Sbjct: 335 DDFIKAKGKDAFEEKIADAQDSYNYKYNKILDEYSSAKPAERFDKLNLFVDFLASIKQEL 394 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + S Y + ++ + ++++ S K Sbjct: 395 TQEIFINNVSKLFDIDKTTLKQAVSRYNKDTDLKYSNKSKFNKKEKIIVESTNK-----D 449 Query: 480 PSLREAALLLTLIN-------HPAILQEQYQ--------------ELADIRYDNNELQKL 518 + E +L N + +++ + + + + Sbjct: 450 FRINELEVLRLFFNQRSDYEKDRDFFDRAIENEKINNVKTFLKEKDVSKFDLSDEDYKYI 509 Query: 519 WSFLFSDFVEQKYFLPEEIHQRL 541 ++ L EE+ +++ Sbjct: 510 LDYIRD---NTNPILAEELKRKI 529 >gi|227486749|ref|ZP_03917065.1| DNA primase [Anaerococcus lactolyticus ATCC 51172] gi|227235219|gb|EEI85234.1| DNA primase [Anaerococcus lactolyticus ATCC 51172] Length = 555 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 148/580 (25%), Positives = 256/580 (44%), Gaps = 37/580 (6%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ D I + + I ++IG+YVD + + Y CPFH+EKTPSF + K Sbjct: 1 MSLISDDMINQIKENSDIVDIIGEYVDLKKAGS-----SYKGLCPFHNEKTPSFTVDKKK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 ++CF C GD +SF+ G S+ ES++ LA AG+ + V + + + + L Sbjct: 56 QLFHCFGCGAGGDVVSFIMQKEGLSYPESLKYLAHKAGINI--VFTENPEVNQKKVRLYE 113 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + +F+ +L + + YL +RG+ S+ + F LGYA DS L + K + Sbjct: 114 INKEIMMYFYKNLLTTKAPQD--YLLKRGLRSNIVNTFMLGYAKDSWDDLLSFAKSKNIN 171 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+ + E GL I + YD++RNR+IFPI + G++I FGGR++ KYLNSPE+ Sbjct: 172 EDDLFELGL-IAKSKNGKFYDKYRNRIIFPIIDTYGRIIGFGGRSI-DNTMPKYLNSPES 229 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K NLY ++ +ILVEGYMDV++L G+ V+SLG Sbjct: 230 DVFKKRFNLYGLNIFKKQSKR------------DLILVEGYMDVIALNNNGIDLAVASLG 277 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L + + I +C+D D G++A +AI++ V+ + L G DP Sbjct: 278 TALTVEQAKLAKRYADNIYICYDSDSAGIKATKRAIEI---FKEAEIGVSIIQLGEGLDP 334 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YGK AFE I E++ + +++ + S + +E+ E + I Sbjct: 335 DEYVKKYGKEAFENKINEAVDEYNYTYEQILDGYSQASENEKLEKLNQFIGFLASINQDL 394 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + + Q S Y K ++D + ++V + Sbjct: 395 TREIFINKVSNLFDIDKQTLKGAISKYNNKHHKEKIYKD------NFPEPNIVVEEKKTD 448 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD---FVEQKYFLPEE 536 + E +L + N +E + + + FL + + Sbjct: 449 INAHELEILRLIFNQQEDYKENSDYFDKY-LTSPKAKNFRDFLINKEVDKFNKADSDYRY 507 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + L+ +L ++ + Sbjct: 508 MLDYVMDDNNPILVSELKDKINLYERIQKRNNLRRSPINS 547 >gi|225163702|ref|ZP_03726005.1| DNA primase [Opitutaceae bacterium TAV2] gi|224801693|gb|EEG19986.1| DNA primase [Opitutaceae bacterium TAV2] Length = 621 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 129/649 (19%), Positives = 238/649 (36%), Gaps = 60/649 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+DL + + I +++ + R G + CPFH EKTPSFH N +GF+ Sbjct: 4 IKPACIRDLKVRVNIVDVVSRVATLRRAG-----GRFKGLCPFHSEKTPSFHVNPDRGFF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 CF C GD ++F+ +F E+V+ L GVP+ + ++ ++ +L Sbjct: 59 KCFGCGKAGDIITFVQETEQLTFGEAVETLGKRFGVPIEYEEGSGGPSREERSLRQELFD 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERG-----IDSHAIEMFKLGYAPDSRYSLREHLR 174 L + A + FH + Y+ + + F++G L Sbjct: 119 LHDFAAEHFHQVFRTKGGGWAGDYMRDYWTTKRRFSMELADEFRIGATDAQGSGLVAAAL 178 Query: 175 QKGFSEEKIIEAGLLIDG----DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---- 226 +K FSEE + ++ L T RF+ RL+ PIR +G+V+AF R Sbjct: 179 KKKFSEEALRQSSLFYIRDGALPTLGTVRPRFKGRLMIPIRDHQGRVVAFTARQTDLTPK 238 Query: 227 --KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 KY+NS ET +F KG L+N A + + ++VEG +D L Sbjct: 239 DEPSYEAKYVNSTETPIFTKGHLLFNLDRARQHAK----------DGQPFVMVEGQLDAL 288 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 G++ ++ GTA+TE QL LL + ++ FDGD+ G AA + + + L Sbjct: 289 RSWSVGIKTAIAPQGTAITEQQLHLLRRYHTQVECFFDGDNAGRAAALRFLPMAL---KA 345 Query: 345 GNRVNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 G V F+ DPD G A+E+L + ++ + + +++A Sbjct: 346 GLEVRFLAAPGEAKIDPDVLFLERGLAAYEELRSGARGPMEFACAALLPDPGRASAEQKA 405 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 ++ +N + +R + + L+ + + R + Sbjct: 406 RAAQGVREIVNAAESHVVRAAFLKEAAALLRVDETALLHD----ARTNIGGRPPPPSRQA 461 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSF 521 G + E LL ++H + + L + Sbjct: 462 EADADAGRNTFGAVQAFEHTAEQHLLWLCLHHEQLGPSIARSFPRNWINTTRTAGALLNR 521 Query: 522 LFSDFVEQKYFL-PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 ++F + + + + L ++ L S + + + +Q Sbjct: 522 FLNEFEHGEDWPGLDHLDPLLETDEERNMIASL-------SFESLQVDEPLKVAIEAIRQ 574 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R L + +++ IA G ++ + E+ Q+ Sbjct: 575 -----LRAHALEPRLRQLDLAIA----SGGSDDPIAMFKERTELQRQLR 614 >gi|319935433|ref|ZP_08009870.1| DNA primase [Coprobacillus sp. 29_1] gi|319809649|gb|EFW06062.1| DNA primase [Coprobacillus sp. 29_1] Length = 585 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 143/633 (22%), Positives = 285/633 (45%), Gaps = 53/633 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IGQY+ +++ N Y A CPFHD+ PS + K Sbjct: 3 RLSQEKINEIRQSVDIVDVIGQYLALEKKGRN-----YMAVCPFHDDTHPSMSVSPDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 + CF CH G+ +FL L S+IE+V+++A I + L +EK+ + L + Sbjct: 58 FMCFVCHTGGNVFTFLQEYLKISYIEAVKKVAEIGRIDLSDYQLDVEKRPINQEHVALYQ 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + A + + L YL R I+ F++GYAP L + + GF Sbjct: 118 MHQEAQKIYSYYLNTKLGLEAKTYLLNRQFTDELIKEFQIGYAPLEP-VLHQSFEKLGFQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPE 238 E ++++GL+I+ S ++DRF +R++FP+ + +GQVI F GR + KY+NSPE Sbjct: 177 EIDMVKSGLVIE---SQKNFDRFNDRIMFPLFNQQGQVIGFSGRIYKPTQTDAKYMNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F KG+ LY++ ++ + F+ L+EG+MDV+++ +AG+ N ++ + Sbjct: 234 SDIFIKGQTLYHYHQCREAVK----------QAGFVYLLEGFMDVIAMYKAGIGNTLAIM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ ++ L +L+ + LC DGD G A KA G +V ++L G+D Sbjct: 284 GTALTKGHIQALRRLTNTVHLCLDGDQAGQAAMSKAAR---ELEEAGFKVQIIILPDGKD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + +G+ E+++ +++ ++ E + D+R + + I I D Sbjct: 341 PDEIYQMHGQEGLEEVLRKTVKPIEFQMDFEYQLVDPLNYDDRKQYLEKMCYEITQITDD 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R YY + + ++ G ++ HR+ K ++ Sbjct: 401 IDRDYYIHVLSKKSGFSYEIIQQRVVGMKPQRIEDTVHREIKK-----------TIQIID 449 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E LL ++N + + + + N+ + + S++ + + ++ Sbjct: 450 KYRKAEHDLLFYMLNSKDVALKYEAKAGFM--YNDAYRVIASYIVDYYRNHSHLEVADLI 507 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + + ++ + + L E I D Y + + +K + Sbjct: 508 NSIQKEQLIQTVIEISQ----SALPLNYEEKAIDD-----------YIKTIAANARKMKK 552 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E+ + Q + + A +++ + ++ + I Sbjct: 553 EQLLEQFNYSLDPSQKAQILNEIVKLENEKESI 585 >gi|73666940|ref|YP_302956.1| DNA primase [Ehrlichia canis str. Jake] gi|72394081|gb|AAZ68358.1| DNA primase [Ehrlichia canis str. Jake] Length = 604 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 161/638 (25%), Positives = 275/638 (43%), Gaps = 59/638 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y + + + + +S+++GQ V +R + CPFH EKTPSF +D KG Sbjct: 15 AYDMNVVDIIKSKVKLSDVVGQRVKLTKRGNSV-----IGLCPFHGEKTPSFTVSDEKGL 69 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C GD + F S + F +V LA + + LP ++ LI L+ Sbjct: 70 YYCFGCGANGDVIQFTSDINALDFKGAVDYLAEMYSIDLPKST-------SKKSSLIPLL 122 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + AT +F L + Y+ R I S ++ F+LGYAP L ++L +GF+ Sbjct: 123 DAATLWFEKQLFAN--RVAIEYIKSRKIFSDTVKKFRLGYAPAY--GLSKYLLSQGFNIN 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I GLL D D F NR+IFPI +S G I FGGR++ +S KYLNS + Sbjct: 179 DIRSVGLLNSQDQ-----DYFYNRIIFPICNSSGDTIGFGGRSIVDAQSPKYLNSRGNVF 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K +NLY A+ ++K + II+VEGYMDVL L Q GV NVV LGT+ Sbjct: 234 FQKRENLYASHFAVREVKKQGK----------IIVVEGYMDVLMLHQIGVCNVVGLLGTS 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 +T L LW+++ I++ DGD G ++ K+ L L + PG V FV + G DP Sbjct: 284 MTSEHLMYLWEITSEIIIWMDGDVAGKMSSIKSALLALSLIKPGCVVKFVDVFTGMDPYD 343 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN----TPDERAELEIHLKNCINHIKD 417 G + L+ + L + +W E S + P++ LE +K+ ++ I D Sbjct: 344 VCINGGVDSVNSLLDSAKLLSEFIWDYELAKISTDKSSVMPEQCVVLEARIKHYLDQIGD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + YY + +++ L +++N R Sbjct: 404 GNIAKYYKKYFYSQIRDL-------------QYRRNESKPLANHSINRASNKLKYVNDEF 450 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSD--FVEQKYFL 533 + ++ ++ P +L + + + + N + KL + + + Sbjct: 451 LLEEYNQLRVMYVIMEFPELLDDPIIFDQFSKFNIKNKNVYKLQQNIINIKVTLCDHVMS 510 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E + L + ++ + ++ + S A+ +D+ + + + L Sbjct: 511 KEMLLLELKKSNLEGVIDFISSKISASSFMSIQNRAHNIDIAKKEIEKIMLLDN------ 564 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + I+ +I + G+ + L + E+ ++ ++ Sbjct: 565 -LQCIQAEILDLRLHGKRDLAEKLSNQAQEIDSRLREL 601 >gi|225630229|ref|YP_002727020.1| DNA primase, DnaG [Wolbachia sp. wRi] gi|225592210|gb|ACN95229.1| DNA primase, DnaG [Wolbachia sp. wRi] Length = 582 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 167/634 (26%), Positives = 289/634 (45%), Gaps = 70/634 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + + +S+++G+ V +R + CPFH+EKTPSF +++KG YYCF C Sbjct: 4 IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD F+S G SF E++++LA++ GV LP ++ K L +++A ++ Sbjct: 59 LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F ++ + YL +R I I+ FK+GYAP S L+E+L G + +I+ G Sbjct: 115 FAQK-----NQGVVDYLKQRKISPKIIDQFKIGYAPSS--GLKEYLNSSGIEDRILIDIG 167 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 L+ D F +RLIFPI+S G+VI FGGR LS + KYLNSPE+ LF K +N Sbjct: 168 LVNK-----NFRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKREN 222 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY AL+ ++K I++VEGYMD ++L QAG+ N V+ LGTA++ Q+ Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISAEQI 272 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365 + LW+ + I +C DGD G AA + +L L L PG + FV L +DP Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELE 332 Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Y K + S L +N P++ + LE +N I + + Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY ++ +E + N++ R KG L++ + + Sbjct: 393 RRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN--- 441 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +A +L + P IL +++ + + N E+++L + + E + Sbjct: 442 ---QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKNKLDKEALL 497 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q L + + + ++++ + +++ + +L ++ + Sbjct: 498 QELKQFNV---------------IKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNAL 542 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 K+ + G + LI + ++ I +++ Sbjct: 543 RKERTEARLSGNLDLEERLIEQIEQIESSIQEMQ 576 >gi|323697927|ref|ZP_08109839.1| DNA primase [Desulfovibrio sp. ND132] gi|323457859|gb|EGB13724.1| DNA primase [Desulfovibrio desulfuricans ND132] Length = 583 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 178/614 (28%), Positives = 273/614 (44%), Gaps = 50/614 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ + I IS+++ +YVD V G + CPFH E PS ND +GF+YCF C Sbjct: 6 IEAVKARINISDVVRRYVDLK-----PVSGRWMGACPFHQETKPSMSVNDEEGFFYCFGC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIRLIEVAT 125 GD + F + G F ES+++LAA GV L DP +++ + L+ + + A Sbjct: 61 QASGDVIDFYGRINGLEFKESLEQLAAECGVELSHVPSDPHAAERKARKQLLMDMHDEAN 120 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 FF +L A + YL RG+ I F LGY+P+ + L LR KG S E +E Sbjct: 121 QFFQRNLSLASGDQCRRYLANRGMTPEMIAKFGLGYSPEDWHGLDNFLRTKGRSPEDGVE 180 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AGLL YDRFR RLIFPI++ G+VIAFGGR +++GE KYLNS +T ++ KG Sbjct: 181 AGLLSKN-EKNNIYDRFRGRLIFPIQNLSGRVIAFGGRIITEGEP-KYLNSSDTPIYKKG 238 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +LY A + + ++ R IL EGYMDV+SL Q G + LGTALT Sbjct: 239 DHLYGLNLARSTMTRTKRA----------ILTEGYMDVISLHQFGYTDSCGVLGTALTAD 288 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q++ L R+ L FDGD G +AA K+ ++L G VLL GED DS ++ Sbjct: 289 QVKRLAGFCSRVDLVFDGDGAGHKAAMKSSRMILLQ---GVACRAVLLPDGEDVDSLLQT 345 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G FE + E+ + E + A+ ++ + D LR YY Sbjct: 346 RGAEGFEVCLNEAPDGLTFCMNTLREEYAPRDIMAWAKS------FLSELSDASLRAYYL 399 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + L L + +G ++N RH+ ++ + V + Sbjct: 400 PRLVTGLG-LSEADFRRDAGAAAPQQRNPRHQPRQTMRAEPQPAMGVGKDFADD-----R 453 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L I +P + E + + LW L + I L E+ Sbjct: 454 YFLRFSIQYPDYVTELAKRGMTQVLRTEWARALWEKL-------ETTQQGHIASLLNEQE 506 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 G + R+ + + ++++ +AL ++ K ++ + I Q Sbjct: 507 KGFYFR-----CREELHENVLSGRDLLEEWNHICHTIALEQQKL----DKRQLTEAIRQA 557 Query: 606 TAKGEAEKTAILIS 619 G+ E+ L++ Sbjct: 558 QQSGDTERAMQLLA 571 >gi|2494142|sp|P71481|PRIM_LEGPN RecName: Full=DNA primase gi|1575484|gb|AAB09542.1| LpdnaG [Legionella pneumophila] Length = 576 Score = 311 bits (797), Expect = 2e-82, Method: Composition-based stats. Identities = 163/618 (26%), Positives = 275/618 (44%), Gaps = 53/618 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + LI YV +R + ACCPFH+EKTPSF+ K FY Sbjct: 5 IPQPFIDDLLNRTDLVELIDGYVPLKKRGN-----SHIACCPFHNEKTPSFNVVAKKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G+ +SF+ L F ++V+ L A V P + K + L L+ Sbjct: 60 HCFGCGASGNAISFVMNYLNQGFTDAVETL-RRAWVKCPRDGTGEKHKSSLN--LYNLMS 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ LK + YL RG+ + + LGYAP+ ++L + ++ + Sbjct: 117 EVSQYYQKKLKYN-GQVAIDYLRNRGLSGEIAKRYHLGYAPEGWHNL---EKAFPNNQRE 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G+LI D YDR+RNR++FPI G+VI FGGR L K + KYLNSPET+LF Sbjct: 173 LLSTGMLIKSDEG-KIYDRYRNRIMFPIHDRNGRVIGFGGRVLDKDQKPKYLNSPETVLF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY ++ + II+VEGYMDV++L Q G+ NVV++LGTA Sbjct: 232 QKSRELYGLHQ----------VLSQQKNPDSIIVVEGYMDVIALAQHGIFNVVATLGTAT 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + ++LL K + ++ CFDGD G +AA++A++ L HL G F+ L DPDS Sbjct: 282 STFHIQLLAKHTKHLIFCFDGDAAGKQAAWRALESSLPHLNAGLDAGFIFLPNEHDPDSL 341 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R GK F +L+ ++ PL + +++ + + P + +L +K + + + + Sbjct: 342 VRNEGKNGFLELLQQATPLHRFFFDTLSKDINLSNPAGKTQLINAVKPYLQKMVEGSYKQ 401 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL + +T K + + P Sbjct: 402 LLIDDLS-RLTHIESHRLTNLITDKSESKPEVQAAISRSPL------------------- 441 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L+ +P I Q++ E + L ++ + + Sbjct: 442 --RIAIALLLQNPEIYSIAIQQINPALLHEQEHH-ILLKLLQQLKDKPNANTATLIEFWR 498 Query: 543 ERGFGELLKQL---DRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL+ +L D QV + L + + +Q + ++ L ++ Sbjct: 499 NSSYFELIVKLAAWDHQVPEQELTKEFIDVLLFLQKQNREILIRQYIEKSRKTGLTEAER 558 Query: 596 EEIEKQIAQVTAKGEAEK 613 ++ + + + E EK Sbjct: 559 LSLQNLLKERHGQAEIEK 576 >gi|239948366|ref|ZP_04700119.1| DNA primase catalytic core domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922642|gb|EER22666.1| DNA primase catalytic core domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 595 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 173/633 (27%), Positives = 295/633 (46%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF +DSK Sbjct: 1 MRVTPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL R I I+ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILNYLHRRNITETTIKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVL-GDGLPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLLSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LK+ N I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKDYCNKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + +D++ Q N + +K ++ + +V + Sbjct: 399 RASYYRFFKDQIWQ------------------NLVSKQKKVITKSSNLAPIVSSHSYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EMLEHAFCALLVKFPIILEEKDIKDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q +E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQ-QEY 553 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I + EK + + + ++ + Sbjct: 554 TITINSTDN-HDFEKVLLYKKEILRIANELQVL 585 >gi|315185630|gb|EFU19398.1| DNA primase [Spirochaeta thermophila DSM 6578] Length = 598 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 168/638 (26%), Positives = 276/638 (43%), Gaps = 53/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ + + +L+G+Y R Y CPFH + PSF + KG Sbjct: 3 RIPQEIIEEIQRRVDVLSLVGEYTSLRRAGN-----SYMGLCPFHADSDPSFSVDPEKGL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 +YCF CH G+ F+ + C+F E+V+RLA AGV + V P+ E K + L L Sbjct: 58 FYCFGCHKGGNIFQFVMEVEHCTFYEAVERLAERAGVSITAKVTPEEEASFKKERALQDL 117 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHA-IEMFKLGYAPDSRYSLREHLRQKGF 178 F H L + + Y RGID + F LGYAP Y L LR+KG+ Sbjct: 118 NLRLVGLFEHFLHSREEGRAAREYCVSRGIDLSWARDTFHLGYAPHDPYWLYRFLRRKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SEE + +GL Y F +RLIFPI G+V+ FGGR L + + KYLNSPE Sbjct: 178 SEELLHVSGLFSAKREG---YAIFSHRLIFPIYDVSGKVVGFGGRALREDQQPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K + LY AL L+K+ + +ILVEGY+DVL L Q G+ NVV+ L Sbjct: 235 TSLFKKKRLLYGLHRALPELKKTKK----------VILVEGYIDVLLLHQHGIMNVVAPL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + Q L + + I+ FDGD G RAA +A + V+ +GED Sbjct: 285 GTAFSREQAIQLKRYADSIIFFFDGDAAGERAAQRAGMICE---AVDFPCRMVVPPQGED 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKD 417 P SF++ G ++++E + L +R + + + + E + + I ++ Sbjct: 342 PASFLQKKGAEEVRQILMEEKDVFQCLLERRVKEGILTSSETDMREFVTSMFSYIRSVQS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + + + + + + + +A G + +++ Sbjct: 402 TMRRERLLEEMAESMGVSLGAIKEDFDRFQSSERNSAPLSTTMGMGRDRRRTT------- 454 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L L HP + + ++ ++L+ L P+ + Sbjct: 455 ------EVFLFQALCAHPEYYTVVRPLIQEDALEDASAKELFFALEECLRAGTMDRPDAV 508 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + EL + ++S E + VR+ + R + L R++ E Sbjct: 509 LEHVTDEKARELALE--------AVFSGEFEVPLEAVREAVFRW-----REQWLHRRRRE 555 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 IE++IA +G L+ + ++ ++ E Sbjct: 556 IERKIALYEREGGD--IQELLLEKMYLDKELEKLRGYE 591 >gi|15672534|ref|NP_266708.1| DNA primase [Lactococcus lactis subsp. lactis Il1403] gi|19862493|sp|Q04505|PRIM_LACLA RecName: Full=DNA primase gi|12723438|gb|AAK04650.1|AE006289_1 DNA primase [Lactococcus lactis subsp. lactis Il1403] Length = 637 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 159/673 (23%), Positives = 268/673 (39%), Gaps = 84/673 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGF Sbjct: 3 SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD + FL F+++V+ LA AGV L + D + E+K L + Sbjct: 58 YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + +R YL+ERGI I+ F +G AP+ + ++L K Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 ++ I A + ++ +D F NR++FPI + G I F GR + + KY+N+ Sbjct: 174 DEEIMAKSGLFHFSNNNVFDAFTNRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSA 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K L+N A + K + L+EG+MDV++ +AG+ NVV+S+ Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE +R L +++ + VL +DGD G A YKAIDL I + V V + G D Sbjct: 284 GTALTEKHIRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + + YG L+ + + + + I + Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469 + Y + + + L + + R H + L +S Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLDASSLTESFTDENDYSS 458 Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495 V+ + E LL +I H Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++L++ Q+ + R+ + Q L+ + + + + + L + + L Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q+ L + I D+ + + + EE+ +Q+A G E+ Sbjct: 573 QIISLDLPDTASSQEIKDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624 Query: 616 ILISILHEVHIQI 628 L + ++ Sbjct: 625 ELTLQIINQKKKL 637 >gi|258645216|ref|ZP_05732685.1| DNA primase [Dialister invisus DSM 15470] gi|260402566|gb|EEW96113.1| DNA primase [Dialister invisus DSM 15470] Length = 597 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 161/635 (25%), Positives = 287/635 (45%), Gaps = 48/635 (7%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M + +F++ + + ++I Y +D ++ + YWACCPFH EKTPSF + Sbjct: 1 MRKFNNEFLQRVKDSTNLIDVIRAYGIDVKKKGS-----RYWACCPFHHEKTPSFSISPE 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTD 116 GFYYCF CH GD + F+ + +F ++V+RLA + V LP + + +++ + Sbjct: 56 DGFYYCFGCHESGDSIKFIEKMDQITFPDAVERLAEMGHVELPPDEISEEDKREAALVHK 115 Query: 117 LIRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L + E+A ++FH+ L+ K Y +R +D IE FKLG+AP L + Sbjct: 116 LYEVTELAGNYFHNCLLRTNIGKDGLAYFKKRHLDDKTIETFKLGFAPPEWERLYCDFTK 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 + I + G + YD FRNR +FPI +G+++AFGGR + ES KYL Sbjct: 176 RKHISPD-ILLQAGLVGHKNGKYYDTFRNRCMFPIMDLKGRIVAFGGRIMHSEESAAKYL 234 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET++F+K + L+ + AL +++ I+VEGYMD +SL G++NV Sbjct: 235 NSPETVIFNKRRLLFPIYQALPEIRRK----------RQAIMVEGYMDAISLHAHGIKNV 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGTA T Q RLL K + ++ +D D G A +A+++ G ++ LL Sbjct: 285 VASLGTAFTVEQARLLKKYADEVIFSYDMDAAGQNATRRALEIAGS---VGLKLRVALLG 341 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+DPD F+ +G + ++I +++P +D L++ T + + ++ + + Sbjct: 342 EGKDPDEFVNLHGGDEYLEVIDQAVPALDYLFQALRTQYDGATLEGQQKILNEMFAVLTV 401 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + + + L +E RY KKN H ++ V Sbjct: 402 QDNTYQFNSFIRKMARTLHMDEGLIRSE---AIRYTKKNNSHVYISPNVYGEERTGTVSS 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ L + L L++H IL E + L + + + +L+ L Sbjct: 459 NDGRQRRLEQELLKYCLVSH--ILPEGFDSLEKYSFADEFIGRLYDVLKQAGK--GNITV 514 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E RL +L + + V + Y++ + ++ L + Sbjct: 515 EYAEARLERSDLEQLAQLMMTDYHG--------------VAEPYEEYIRPMRKIY-LQNE 559 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++ A++ + + +K + +I Sbjct: 560 YKFHTQRAAELM-ESDPQKAKEEQLTCIRLSEEIR 593 >gi|183220953|ref|YP_001838949.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911048|ref|YP_001962603.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775724|gb|ABZ94025.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779375|gb|ABZ97673.1| DNA primase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 603 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 137/607 (22%), Positives = 264/607 (43%), Gaps = 44/607 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN + F + + + I + I ++V R N CPFH+EKTPSF+ N G Sbjct: 1 MNPYQSFKERVRREVSIDSYINRFVPLRRMGRNL-----VGICPFHNEKTPSFNVNPEGG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD F+ F++S++ L+ +G+PL + E+ E+ + L ++ Sbjct: 56 FYHCFGCKASGDLFRFVMDYQKVDFLKSLEVLSEYSGIPLVERTKEEEESERKKEALYQI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++F +L + YL+ RG+ + +++FK+G+ +LR L + Sbjct: 116 SQKALEYFQKNLNTTAGELALKYLESRGMYAEDLKVFKIGFGLPGFGNLRSELFKTDAEV 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + GLL D + YD FRNR++FP+ RG+V+AF GR L + E KY+NSP ++ Sbjct: 176 KLGEQLGLLKRQDQNKDPYDFFRNRIMFPVIDPRGRVVAFSGRILGESEEAKYINSPNSL 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K + YN A + ++K + ++VEG D + L + G++ VV+ LGT Sbjct: 236 IYDKSRTFYNLNLAQDSIRK----------TREAVIVEGVFDAIGLFRKGIEFVVAPLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 TE +R+L ++ ++ L D D G + A++A++L G V + G+DP Sbjct: 286 GFTEGHVRILKNMADKVYLMMDSDKAGTKGAFRAVNL---LSKEGVVVKVCHIPEGKDPF 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIKDQK 419 + + K +L+ + P + + + +E+ L + ++ + Sbjct: 343 DYSLHHNKQEIRELLEGASPASQFMIREILAGAGPTSLAEEKQAGVKKLFEFLKPMEKET 402 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + +L F + G + +K + + K Sbjct: 403 DKQVYLEEGARQLGLSFSSLFQDFRGKPGVTSTPSVVDTKKDRTPQ-------KPGKPSP 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH- 538 + E ++ LI + + +L + + + W +L++ +++ + EI Sbjct: 456 VLVCERKMIAMLIQNLELFS-FADDLLSLEFRDEVSAFFWDYLYTKYLQNENLTAAEILS 514 Query: 539 -QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + G + + V +A+ LY L + EE Sbjct: 515 REEIPSEYLGMIAEHFSADVSVTPATF---------------RAMFLYHADLLDDARMEE 559 Query: 598 IEKQIAQ 604 + K++A+ Sbjct: 560 LVKEMAK 566 >gi|146295918|ref|YP_001179689.1| DNA primase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409494|gb|ABP66498.1| DNA primase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 616 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 137/627 (21%), Positives = 253/627 (40%), Gaps = 52/627 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +L + I +++ Y+ R N + A CPFH EKTPSF+ + +K ++C Sbjct: 30 ERIVEQVLNKVDIVDIVSSYIPLKRVGVN-----FRALCPFHSEKTPSFYVSPAKQIFHC 84 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRLI 121 F C V G+ + F+ + +F E+++ LA A + + + K K + +LI L Sbjct: 85 FGCGVGGNVIHFVMRMENLTFTEALKVLAEKAKIDIDFSQSQSAKDRALAKQKEELINLH 144 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + ++F L ++ Y+ +R I + F LG+ P+ ++ Sbjct: 145 KDCFEYFREQLYLRKNIEAVKYIIKRRIAKDTAKRFGLGFCPEKNDLYDRLSQKYSKEII 204 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240 + I + + +Y RF RLIFPI + +VIAFGGR +S + KY+NSP+T+ Sbjct: 205 DLSG----IFLERNGKNYCRFEGRLIFPIFDTMNRVIAFGGRIISDASAAPKYMNSPDTL 260 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A + ++VEGYMDV++L Q G+ N V LGT Sbjct: 261 IFSKSRILYGLNIAKQS------------KENEFVVVEGYMDVIALHQEGIDNAVGVLGT 308 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ LL + +VLC D D+ G +AA ++ D+ G V + L +DPD Sbjct: 309 ALTQDHSFLLRRYKNEVVLCLDSDEAGKKAAIRSADI---LYQNGLMVRVMELEGAKDPD 365 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQK 419 +I+ +GK AF S+ ++D K D++ + I ++ Sbjct: 366 EYIKRFGKDAFLLKKQNSMFVIDYKVKELKNQYDLTKSDQKFRFVREYFEKILIPISNEV 425 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + + D E S + K + + Q+ + Sbjct: 426 ERQEYIKKLSDLTGVNENVISKEFSKTTQKELKRIENINYFKQIQQ-----KPVLSDFEM 480 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E LL +E L + + +++ +++ + + E + Sbjct: 481 LKKNENYLLSLYTEWAPKSEEIKNLLTEEDFYTEDVKNIFTAVKNLINEGMELSYSMLLS 540 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + +L L + T + I + L + + L ++ Sbjct: 541 FVTDE---SILFDLTSFSSKGFENADTAKKAIEE----------LKVKIKTLG-----LK 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 ++ + + K ++ L ++ Sbjct: 583 LELKAAQQQNDNLKITQILDELKKLKA 609 >gi|254389039|ref|ZP_05004269.1| truncated DNA primase [Streptomyces clavuligerus ATCC 27064] gi|197702756|gb|EDY48568.1| truncated DNA primase [Streptomyces clavuligerus ATCC 27064] Length = 492 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 122/462 (26%), Positives = 210/462 (45%), Gaps = 28/462 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D IK + +PI ++ +Y+ NA G+ CPFHDEK+PSF + KG Sbjct: 4 RINDDDIKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPGKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIR 119 ++CF C GD ++F+ + +F E+V+RLA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLTFSEAVERLAGTAGITLRYEEGGYNPSHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +VA ++ L + +L ERG D A F +GY+P L LR KGF Sbjct: 120 AHKVAAQYYAEQLENSPEAAAGRTFLAERGFDQAAALHFGVGYSPQGWDHLTRFLRGKGF 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 S++++ +GL + DRFR RL++PIR G V+ FG R L + ++ KYLN+P Sbjct: 180 SDKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDISGDVVGFGARKLHESDNGPKYLNTP 237 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET ++ K + LY A + + +S ++VEGY DV++ AGV +++ Sbjct: 238 ETAIYKKSQVLYGIDLAKKEIVR----------TSTAVVVEGYTDVMACHLAGVTTAIAT 287 Query: 298 LGTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 GTA +++L + ++ FDGD G +AA +A + + + Sbjct: 288 CGTAFGGDHIKILRRLLMDHATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAI 344 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 G DP G A E L+ PL + ++ + + P +A + Sbjct: 345 TPGGMDPCDLRLAEGDAAVEALVGSRTPLFEFAMRQIVQRHNLENPAGQAGALDEAAPVV 404 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 IK+ +++ + + + L +++ + W ++ Sbjct: 405 AKIKNPAIQHGSAVQLAGMIGILDTQFVVKRVAQLARWARDR 446 >gi|157965029|ref|YP_001499853.1| DNA primase [Rickettsia massiliae MTU5] gi|157844805|gb|ABV85306.1| DNA primase [Rickettsia massiliae MTU5] Length = 617 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 170/633 (26%), Positives = 299/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF +DSK Sbjct: 23 MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 77 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 78 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTAKQKEFYEESDEILNI 137 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL ER I ++ F +G+AP + + + Sbjct: 138 LELANKFFRTQLT----PEILHYLHERSITEETVKEFSIGFAPKNNKIEKFFHDKNIDII 193 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 194 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 250 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 251 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 300 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 301 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 360 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +++A LE +LKN + I D L Sbjct: 361 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEKKANLEKNLKNYCSKISDSDL 420 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + ++++ Q N +K ++ + ++ + Sbjct: 421 KASYYRFFKNQIWQ------------------NLVTTQKKATTKNSKLAPIISSHGYSEL 462 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 463 EMLEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 521 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 522 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 576 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 577 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 607 >gi|1094407|prf||2106154A DNA primase Length = 642 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 162/673 (24%), Positives = 271/673 (40%), Gaps = 84/673 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGF Sbjct: 3 SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD + FL F+++V+ LA AGV L + D + E+K L + Sbjct: 58 YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + +R YL+ERGI I+ F +G AP+ + ++L K Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 ++ I A + ++ +D F NR++FPI + GQ I F GR + + KY+N+ Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K L+N A + K + L+EG+MDV++ +AG+ NVV+S+ Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIASYKAGINNVVASM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE +R L +++ + VL +DGD G A YKAIDL I + V V + G D Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + + YG L+ + + + + I + Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469 + Y + + + L + + R K H + L +S Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMKITDHPVSNLDASSLTESFTDENDYSS 458 Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495 V+ + E LL +I H Sbjct: 459 LESVMPVDFEETYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++L++ Q+ + R+ + Q L+ + + + + + L + + L Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEE-----RSLFY 572 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q+ L + I D+ + + + EE+ +Q+A G E+ Sbjct: 573 QIISLDLPDTASSQEINDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624 Query: 616 ILISILHEVHIQI 628 L + + +I Sbjct: 625 ELTLQIINQNEKI 637 >gi|169351084|ref|ZP_02868022.1| hypothetical protein CLOSPI_01863 [Clostridium spiroforme DSM 1552] gi|169292146|gb|EDS74279.1| hypothetical protein CLOSPI_01863 [Clostridium spiroforme DSM 1552] Length = 583 Score = 311 bits (795), Expect = 3e-82, Method: Composition-based stats. Identities = 144/627 (22%), Positives = 282/627 (44%), Gaps = 52/627 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I ++ + I +++G Y+ ++ N Y CPFHD+ PS + K Sbjct: 3 RLSEKKIDEIRQSVDIVDVVGNYLSLKKKGRN-----YVTLCPFHDDSNPSLTISPEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 Y CF C G+ +FL L +IE+V+ +A++ V + + + + ++ L + Sbjct: 58 YMCFVCGNGGNVFNFLKNYLKIPYIEAVKMVASMGNVDISEYNLERRVQLVDQKLEPLYK 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + A +HH L YL+ R ++ IE F++GYAP++ L + + GF Sbjct: 118 MHDEANKIYHHYLNTKLALPAKEYLNARSMNDEIIETFEIGYAPNN-NILLKAFEKMGFD 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 + + E+GL+I+ + YDRF +R++FP+ + G+V+ F GR + ++ KY+NSPE Sbjct: 177 KIAMYESGLIIENNQG---YDRFSDRIMFPLHDTSGRVVGFSGRIYQQSQNESKYMNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F KG+ LYN+ A+ ++ + F+I+ EG+MDV++L +AG++N V+ + Sbjct: 234 SKIFIKGELLYNYHRAIEEVR----------QAGFVIVNEGFMDVIALYKAGIKNAVAIM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ +RLL +LS + LC DGD G +A KA D+ + G V + LS D Sbjct: 284 GTALTKGHIRLLKRLSKVVYLCLDGDQAGKKAMIKASDI---LINEGFSVKIIDLSDDLD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F+ G LI L +D E + + +ER + + + I+++ D Sbjct: 341 PDEFLEKKGVDELNALIKRPLSSLDFKMNYYYELTNMDNYEERKKYLEMITSEISNLDDM 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + YY Q + + + + + + S RL+ Sbjct: 401 IDQDYYIQQLEKKSGFSKEIISSLVNKQSVTKINQPTKQVFYQQSVRLI----------D 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K S E LL ++N + Y+ A + N+ + + S++ + + ++ Sbjct: 451 KYSKAERDLLYYMMNDKNVAM-MYEAKAGFMF-NDNYRIIASYIVDYYRHEVVLEIADLI 508 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + + ++ + + Y + + + + + + +E+ Sbjct: 509 SSIEDENLVKNIVEISQL--------NLPKLKDTKAINDYIETI----KEKTVKIKIDEL 556 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVH 625 K + + ++ A ++ + + Sbjct: 557 TKALKD---TFDPKQKAQILKEIIALK 580 >gi|326406053|gb|ADZ63124.1| DNA primase [Lactococcus lactis subsp. lactis CV56] Length = 637 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 159/673 (23%), Positives = 267/673 (39%), Gaps = 84/673 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGF Sbjct: 3 SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD + FL F+++V+ LA AGV L + D + E+K L + Sbjct: 58 YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + +R YL+ERGI I+ F +G AP+ + ++L K Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 ++ I A + ++ +D F NR++FPI + G I F GR + + KY+N+ Sbjct: 174 DEEIMAKSGLFHFSNNNVFDAFTNRIMFPITNEYGHTIGFSGRKWQENDDSKAKYINTSA 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K L+N A + K + L+EG+MDV++ +AG+ NVV+S+ Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIAAYKAGINNVVASM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE +R L +++ + VL +DGD G A YKAIDL I + V V + G D Sbjct: 284 GTALTEKHIRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + + YG L+ + + + + I + Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIAKLPSI 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--------- 469 + Y + + + L + + R H + L +S Sbjct: 399 TAQDAYIRKLVEILPDFEYNQVEQAVNLRRENMTITDHPVSNLDASSLTESFTDENDYSS 458 Query: 470 ----------------------------------SLVKGKLSKKPSLREAALLLTLINHP 495 V+ + E LL +I H Sbjct: 459 LESVMPVDFEEAYYENNVKTQQTYRRSESAQVVQPSVQVPKLSRSEKAEEMLLHRMIYHS 518 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++L++ Q+ + R+ + Q L+ + + + + + L + L Sbjct: 519 SVLKKFSQD-ENFRFVHKRYQDLFDKILLEAMVYEQIDESHLASELSDEEC-----SLFY 572 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q+ L + I D+ + + + EE+ +Q+A G E+ Sbjct: 573 QIISLDLPDTASSQEIKDLVSIFSNEME--------QIKFEELIQQLATAEKAGNKERVL 624 Query: 616 ILISILHEVHIQI 628 L + ++ Sbjct: 625 ELTLQIINQKKKL 637 >gi|289523411|ref|ZP_06440265.1| DNA primase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503103|gb|EFD24267.1| DNA primase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 584 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 166/616 (26%), Positives = 272/616 (44%), Gaps = 43/616 (6%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+++ + I +++G YV + Y A CPFH EKTPSF+ + F++CF C Sbjct: 6 IEEIKKRLDILDIVGDYVQLKKVGKG-----YRALCPFHSEKTPSFYVMPDRQFFHCFGC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD +SF+ + G SF ++++ LA G+ + E + +L ++E A Sbjct: 61 GKGGDVISFVMEIEGLSFPDAIELLANRVGIKID----SNETRRNEW-NLSEVMEKALKI 115 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 + SL++A + YL +R + F++G+AP S L L + G + IE G Sbjct: 116 YRDSLESAGGEVARKYLIQRRLLEKWWSRFEIGWAPPSWDYLWRLLNKAGIPSKAAIECG 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 L+I+G YDRFR R+IFPIR G++I FGGR++ GE KY+N+PE+ LFHKG+ Sbjct: 176 LVIEGQR--GLYDRFRGRIIFPIRDVIGRLIGFGGRSI-AGEGAKYINTPESPLFHKGRC 232 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY A + +++ R ILVEGYMD + L +G V+SLGTALTE Q Sbjct: 233 LYLLNVAKDAMREKGRA----------ILVEGYMDAIRLHISGFGESVASLGTALTEEQA 282 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 L+ + + +C+D D G AA + + L G +V V+L G DPD F+ G Sbjct: 283 NLISRFADVCYVCYDADTAGQEAAIRGMYL---LQASGLQVKVVVLPHGVDPDEFLSKEG 339 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 + AF++L+ +SL L K ++ R + L + I L + SQ Sbjct: 340 ERAFKELLSQSLHLPLYHLK--IREKALKDLSLRKKAVEELLESFSGISLPDLAPFMSQI 397 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + + + + + S + S + + S +EAAL Sbjct: 398 ASALEVPRYALENMLLNFGANKTRAEDEKKGKSAKSSVYINESKKQDEKSLAVDAKEAAL 457 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L N P +E + ++ L + L + EE+ +R G Sbjct: 458 FALLWNDPEKRHHFREEEIYPLISDERIKTLVAALIN------GESTEELEKRWLNSGDL 511 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L+ L + +A + + R R + + +E+ ++ + A Sbjct: 512 FPLQTLA--LGNAFCEQFEEGISP-------WDVIVGELRLRSIKFRYDELYSKMLKGEA 562 Query: 608 KGEAEKTAILISILHE 623 + K I+ L + Sbjct: 563 NYDEIKEMRKIASLLK 578 >gi|283851054|ref|ZP_06368338.1| DNA primase [Desulfovibrio sp. FW1012B] gi|283573450|gb|EFC21426.1| DNA primase [Desulfovibrio sp. FW1012B] Length = 573 Score = 310 bits (794), Expect = 4e-82, Method: Composition-based stats. Identities = 162/626 (25%), Positives = 259/626 (41%), Gaps = 61/626 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + I+ ++G+YV G CPFH E SF+ + KG Sbjct: 1 MKHDAGAVAAVKARANIAEIVGRYVALRPVG-----GRLVGPCPFHQETKGSFNVHPDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118 F++CF C GD + F + G F E ++RLAA GV L DP+ ++++++ D + Sbjct: 56 FFHCFGCQASGDVIDFYCRINGLEFREGLERLAAEVGVDLGQARRDPRQAERKRVRDDCL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A ++ H L A YL R + + IE F LG +P L+ LR +GF Sbjct: 116 AMHELAERYYRHVLGTAEGTAAREYLTRRRVSAEMIERFALGVSPAGWQGLQGVLRSRGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ + AGLL G N +DRFR+RL+FPIR G+V+AFGGRT+ G+ KYLNS E Sbjct: 176 SDDGGVLAGLLSLGKNG-RVWDRFRDRLMFPIRDGGGRVVAFGGRTMGDGDP-KYLNSAE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ KG++LY + A ++ K+ R L EGY+DV++L Q G L Sbjct: 234 TPIYTKGQHLYGLYEARPHIAKTRRA----------FLTEGYLDVITLHQFGYGEACGVL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA+T Q + L SPR+ L FDGD PG +AA +A ++L G V L GED Sbjct: 284 GTAMTLEQAKRLAGFSPRVDLVFDGDAPGRKAALRAAQMLLTL---GGGCRVVPLPDGED 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS + G+ FE + + E S E+ + + D+ Sbjct: 341 VDSLLHAKGRDGFEACQARAEDGLTFCLHTVRETYSPK------EMAAWAVEFLAGLGDE 394 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR + + L + + ++ A+ + L Sbjct: 395 SLRAVFIPRVASGLGLAEIELRGFLASGQGRPRQPAKPASPRSGVLELSS---------- 444 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 R+A LL + P + + Sbjct: 445 ----RDAQLLAFAVRCPQYVAALA----------------REGVADILSTGGARD---FF 481 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +L G EL +LD + + D + + + ++ + ++ I Sbjct: 482 AKLAGGGPDELATRLDEAQTAFWVRTQLEPVLSEDEASAFFEEICVFLHEARENDRRRAI 541 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + I + +G E L+ L + Sbjct: 542 MEAIRRAQEQGAHEDALRLLGELQAL 567 >gi|254467852|ref|ZP_05081258.1| DNA primase [beta proteobacterium KB13] gi|207086662|gb|EDZ63945.1| DNA primase [beta proteobacterium KB13] Length = 578 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 162/612 (26%), Positives = 281/612 (45%), Gaps = 45/612 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+++L I + +++ Q V + N Y ACCPFH EK+PSF + SK FY Sbjct: 2 IPESFIQEILNRIDVVDVVDQRVKLKKAGAN-----YVACCPFHQEKSPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G +SFL G +FIESVQ +A G+ +P ++K + + L +++ Sbjct: 57 HCFGCGAHGSAISFLMEYDGLTFIESVQSIANQLGLAVPNDQSNVKKDKADEFKLEEILK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F +L+++ + YL +RG+ F++GYA D L++ + + Sbjct: 117 RANQHFKKNLRSS--ELAINYLKKRGLTGTVAREFQIGYASDDWQGLKKEFENYEEPKLQ 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + ++S YDRFRNR+IFPI +++ +I FGGR ++K + KY NSPET LF Sbjct: 175 TAGL---VQKNDSGKIYDRFRNRIIFPIINAKDNIIGFGGRVINKEDQPKYYNSPETPLF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K +Y A ++ + I++VEGYMDV+SL Q G++N V++LGTA Sbjct: 232 KKSYEVYGLPQAKKGIR----------EDNNILIVEGYMDVISLYQHGIENAVATLGTAT 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Y L+ L + S +I CFDGD G AA+KA++ + L F+ L GEDPD+F Sbjct: 282 TIYHLKKLIRYSKKITFCFDGDHAGKEAAWKALNTAVEILEDDYEFYFLFLPEGEDPDTF 341 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I F+K I + PL + + KR TE + + + + + + I K + Sbjct: 342 ITKNSIQDFKKYIDHATPLTEFIVKRLTEKNDLTSQENKIKFINNFEPIYKKINSNKYKI 401 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + I D + ++ +++ S S K K Sbjct: 402 FLIKRIADLIHFSQREIEKMMRIESAENYSSSQQIKY---SPSTRNSLTAKRKY------ 452 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQR 540 +L L+ P + + +E L++ + E + Sbjct: 453 -----ILILVMKPELFNSDDEVFFQSNLIEDE---LFNKIKKLLEENDSNIKNTASLLHS 504 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE- 599 L + +L +L +Q + + ++++ +G Q + + S+Q ++ Sbjct: 505 LVNKVDENILNELQKQ-----MMDYSENIDLLEEFKGIQNSFSHQLNKTQQSQQFAALKN 559 Query: 600 KQIAQVTAKGEA 611 K++++++ + + Sbjct: 560 KKLSELSDEEKE 571 >gi|94269977|ref|ZP_01291621.1| DNA primase [delta proteobacterium MLMS-1] gi|93450989|gb|EAT01966.1| DNA primase [delta proteobacterium MLMS-1] Length = 523 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 152/541 (28%), Positives = 240/541 (44%), Gaps = 41/541 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R+ ++ + I+ +IG++V R N CPFH EKTPSF N +G ++C Sbjct: 18 RETVRLVKETADIAEVIGEHVTLQRAGANL-----KGLCPFHAEKTPSFMVNPGRGSFHC 72 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIE 122 F C GD SFL F E++++LAA +PL P+ ++ + + L + Sbjct: 73 FGCGEGGDVFSFLMLYHRVGFPEALKQLAARYHIPLAETSLSPQQREEARQREALYAINA 132 Query: 123 VATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSE 180 A +H L + + YL +RG+ + IE F+LGYAP LR+ R+K Sbjct: 133 RAAALYHRFLLHDPAADQARQYLAQRGMTAAIIERFQLGYAPPRWDFLRKTLEREKFTPA 192 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L YDRFR R+IFPI G+V FGGR L +GE KYLN+ ET Sbjct: 193 TAAQAGLLASKESGGGHYYDRFRQRIIFPIIDQTGRVAGFGGRILGEGEP-KYLNTAETP 251 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY + L+K + +LVEG D+L+L GV+ VV+ LGT Sbjct: 252 IFDKSRILYGLHQHRDALRK----------ARSCLLVEGNFDLLALAAGGVEEVVAPLGT 301 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT QLR+L +VL FDGD GL+AA +A+ L L + G +L +G+DPD Sbjct: 302 ALTAGQLRILRGYVEEVVLLFDGDSAGLKAAMRAVPLFLAEKLSG---RVAVLPQGQDPD 358 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-K 419 S+IR +G+ ++L+ E L + ++ R + + + L ++ + DQ Sbjct: 359 SYIRAHGRQGLQELLAEGQSLAEFVFSRLAA-EHGLGVEGKNRIIAELAPMVHELNDQHL 417 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR + +RL Q++ + ++R + + + + Sbjct: 418 LRTRFIAHFSERLGISSQQFGQSIG---------------RPAARRPVATPPAEAGEEWQ 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E + L H L + + L + S + PE + + Sbjct: 463 LTANERRIFAFLFLHGQYLPDFLAAGLQEYVSGRAARALLELMISQ-QQDFINAPEVLLE 521 Query: 540 R 540 Sbjct: 522 H 522 >gi|256841519|ref|ZP_05547026.1| DNA primase [Parabacteroides sp. D13] gi|256737362|gb|EEU50689.1| DNA primase [Parabacteroides sp. D13] Length = 705 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 153/710 (21%), Positives = 272/710 (38%), Gaps = 106/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465 R Y + ++ Q + E + +N + Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSARNTPPVQPPANTIPEYPD 462 Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481 ++ Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521 E ALL ++ + + +E D+ + +++ Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L L D+ D Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 + + + ++I+ +I + KG+ E L+ + L+E+ Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691 >gi|149198746|ref|ZP_01875789.1| DNA primase [Lentisphaera araneosa HTCC2155] gi|149138182|gb|EDM26592.1| DNA primase [Lentisphaera araneosa HTCC2155] Length = 611 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 284/632 (44%), Gaps = 39/632 (6%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + I ++IG +V + + CPFH+EKTPSF+ N + FY+CF C Sbjct: 10 QQVKDRNDIVDIIGAHVKLKKNG-----PTFLGLCPFHNEKTPSFNVNQNDQFYHCFGCG 64 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV----VDPKIE-KKEKIQTDLIRLIEV 123 GD L F+ F +++++LA+ A V LP P+ K++ + L +++ Sbjct: 65 ASGDVLKFVQEYESLDFRDALEKLASRANVILPEWGKGQSPEERLKQKNEKEALFDVLDK 124 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 AT+FF L + Y RG++ I ++LGYAP+S ++ + +Q S+E + Sbjct: 125 ATNFFKQQLLLPQGAEALKYAQNRGLNQEVINNYRLGYAPNSWDAVMKWAKQHSISDELL 184 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242 AGL + +YDRFRNRL+FPI+ G+VIAF R L K ++ KY+NSPET +F Sbjct: 185 ATAGLT-KQNEQGKTYDRFRNRLMFPIQDISGRVIAFSARVLEKDSKAAKYINSPETPVF 243 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG LY A +L+ S ++ EG +DV++ +AGV+N +++ GTA Sbjct: 244 HKGNVLYGLHIAHKHLK----------ESEHFVICEGQLDVIACHRAGVKNAIAAQGTAF 293 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ ++ + + + LCFD D+ G +AA K +++ L G + L GEDPD+ Sbjct: 294 TDQHASMIARYAKHVKLCFDADNAGKKAAVKCLNI---LLPKGVIPEIISLEEGEDPDTV 350 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G ++ + + VD + ++ + E+ ++ L + + + + L Sbjct: 351 LSEQGAEVLKEKLSGGMNFVDFIL---SDYGPSSPSQEKVKISEFLLDILAKMPN-VLMG 406 Query: 423 YYSQAIRDRLQQLFQKYITEHS---GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + +LQ Q + R K+ + + + + + + ++ K Sbjct: 407 DWHLRLASKLQLDAQAISEQLRYLVYNKRDHKQYMKPQAEFQQAPQNVAPPPLRLNKISK 466 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 S+ E L+ ++ ++ D+ + +E F+ S + + Sbjct: 467 RSVAEIELIALALSQEVFANLVFENTMDLEPETSESSLALHFINSHIEMGNWKDCSQDLA 526 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + ++KQ + +T + ++ Q L + + ++ E I+ Sbjct: 527 NSYPNVYELVIKQNKISSYHSR---STEGDDFDELMQLINDCLNQISKA-SIEQKYEVIK 582 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +++ ++ + + L+ ++ + + Sbjct: 583 EKLL---SEQDPQIKQDLLKEYMALNQDLKSL 611 >gi|325849222|ref|ZP_08170673.1| DNA primase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480222|gb|EGC83289.1| DNA primase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 553 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 153/577 (26%), Positives = 262/577 (45%), Gaps = 33/577 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++L + I +IG YVD + Y CPFH+EKTPSF +D K + Sbjct: 4 ISDDKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDKKQLF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G S+I+S++ LA+ AG+ + D K ++ K L + + Sbjct: 59 HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLASKAGIKID--DSKSSRENKRLNRLYDINK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F+ +L + ++ YL RG S+ + F LG+A +S L ++++K + + Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLSYVKEKDYLLDD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I GL I + YD++RNRLIFPI + G+VI FGGR++ KYLNSPE+ +F Sbjct: 175 IENLGL-IKKSQNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESEVF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K NLY K IILVEGYMDV+ L G+ V+SLGT+L Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + + +C+D D+ G++A +AI++ L G + N + L +G DPD F Sbjct: 281 TNDQAKLLKRYAKNVFICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ YG+ AF K + E+ + + + + + + + +E+ E + IK R Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDIYASSKENEKFEKLNLFIEFLASIKSDLTRE 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKK--NARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + Y +KK N + D+ + S++ + Sbjct: 398 IFVNNVSKLFDIDKSTLKESVLKYNDNYKKTFNKKFSDESSFKKNNKNQSVLVERKKYSV 457 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEE 536 S+ E L +N +E + + + K+ +++ E + Sbjct: 458 SINELETLRLYLNQRDDYKEFEDFFDQV-LVDENILKIKAYIEKNGMEKISENFTNEDQF 516 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 I + ++ + +L ++ + D Sbjct: 517 IIDYIKDKSNKIVANELKDKINLENRRKLLKKLRNRD 553 >gi|294791094|ref|ZP_06756252.1| DNA primase [Scardovia inopinata F0304] gi|294458991|gb|EFG27344.1| DNA primase [Scardovia inopinata F0304] Length = 696 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 132/691 (19%), Positives = 258/691 (37%), Gaps = 81/691 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + + +++ V G + CPFH+EKT SF+ S G + Sbjct: 5 ITKESVEAVRSAADLYDIVSADVTLKPSGA----GSFVGLCPFHEEKTGSFNIRPSLGSW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIR 119 +CF C + GD +++ F ++V+ LA + L D K++ ++ L+ Sbjct: 61 HCFGCGLGGDVFAYVEQKENVDFAQAVELLADKYHIELKYEDSGSSSKKRQGSTRSRLLE 120 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + E FF L L R E F GYAP +L HL G++ Sbjct: 121 VCEQTQKFFASQLSADEALPARKLLAGRNFTQADCERFGCGYAPQGWDTLVRHLASLGYT 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 ++++I+AG+ G + + YD FR R +PIR S G+ + FG R L + + KY+N+P Sbjct: 181 QQEMIDAGVARQG-QNQSVYDYFRGRATWPIRDSTGRTLGFGARRLYDDDRIAAKYINTP 239 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T+L+HK + LY A ++ +++VEGY DV++ AGV V++ Sbjct: 240 DTVLYHKNQVLYGIDIAKPHI----------VDKRQVVIVEGYTDVMACHLAGVDVAVAT 289 Query: 298 LGTALTEYQLRLLWKLS----------------PRIVLCFDGDDPGLRAAYKAIDLVLCH 341 GTA + +++ + +++ FDGD G +AA A L Sbjct: 290 CGTAFGQEHAKIIRRFISDDSLGAVQLVGPTRGSKVIFTFDGDAAGQKAAIHAFGLDGAF 349 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401 L + + DP YG A LI + PL D + + + + Sbjct: 350 LT---QTFVAVARENLDPCDLRIQYGDAAVRSLIADCKPLYDFVIQAAIRSFDAQYTTGQ 406 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA------R 455 + I I+D L Y++ ++ + E R + R Sbjct: 407 VGAMKAVAPIIARIRDASLVNAYTRKYAGQIGVDIKTLHQEVQTARRRMRIPTIDAYAPR 466 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSL-------------------REAALLLTLINHPA 496 R ++ P L + S + L E LI P Sbjct: 467 RRAEEDPRYSSQNQDLDYSRPSNRRQLDHNNAVNQDYYRIDDTVFITEQQFFGILIQSPL 526 Query: 497 IL-----QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFG 547 + + +Q L++ + + L++ L + P+ + Sbjct: 527 AVSSAGNADLFQRLSERCFMTPVFKSLFAGLQAAGGLPDEQTPQGLWIHNLTKASGPILE 586 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ +L + +++ + QA + + + + ++ + ++ Sbjct: 587 PVINELAVLPLPLSAKNRSSDRHNSGADAAGNQATGGVQTRQPTEAEIKFAQQLLTRL-- 644 Query: 608 KGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +A+ + + ++ ++ E +E + Sbjct: 645 -LDADAMRAVGR----LKHRMARLPEGEEKI 670 >gi|221195862|ref|ZP_03568915.1| DNA primase [Atopobium rimae ATCC 49626] gi|221184336|gb|EEE16730.1| DNA primase [Atopobium rimae ATCC 49626] Length = 628 Score = 310 bits (793), Expect = 5e-82, Method: Composition-based stats. Identities = 149/663 (22%), Positives = 267/663 (40%), Gaps = 69/663 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + L+G+ VD +R ++W CCPFH EK+PSF N G + Sbjct: 2 ITDEDKERVRQATDFVQLVGETVDLRQRGN-----EFWGCCPFHGEKSPSFKVNPQTGLW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD S++ F ++++ LA AG+ L + K + L + Sbjct: 57 HCFGCSDGGDVFSYVQKRENLEFPDAIRYLADRAGITLSEEKQYTKGPRKKR--LFDCLA 114 Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A DFFH L + + YL RG + + LGYAP R +L HLR+ GF+ Sbjct: 115 AADDFFHLMLMRGKGEDFAAARSYLAGRGFGGDVCKRWNLGYAP-GRGTLVAHLRELGFT 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++I A L +D + D F R++FPI RG+ IAFGGR L+K + KYLN+ + Sbjct: 174 NKEMIAANLAVDRGGRTS--DWFYGRVMFPIHDERGRTIAFGGRILTKAENAPKYLNTRD 231 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F+KGK+L+ + A + ++ I+ EGY DV+++ +AG N V++L Sbjct: 232 TVVFNKGKHLFAYDRAKETIA----------ATGVAIVCEGYTDVIAMHEAGFTNTVAAL 281 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA ++LL + +I+ FDGD G RAA +++ V+L + Sbjct: 282 GTAFRLDHVKLLERQRVKKIICMFDGDAAGQRAAARSVQ---FIDKTAAAFLCVVLPDNQ 338 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DP F+ +G A + + + PL+D +++ + + P R L + +K+ Sbjct: 339 DPMEFLAAHGADALKPYLARARPLMDFVFESKLGEFDLSIPGNRVAALHALAEILAPLKN 398 Query: 418 QKLRYYYSQAIRDRLQ-----------------------QLFQKYITEHSGYGRYWKKNA 454 L Y+ + D L Q Q E R + Sbjct: 399 SVLLDEYALRLADTLGVNVAEAKRTITATPIKEISEPRYQNTQPIPPEERTNTRGTSRVD 458 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLR--EAALLLTLINHPAILQEQYQELADIRYDN 512 S+ + + ++ + E LL + + ++ Q +A + + + Sbjct: 459 IASHADNTSRSMASTYDLRALSHDDRTQLQSERELLSAMASRIDAVRAYGQRIAALSWVD 518 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + + + + + + + QV AG + N Sbjct: 519 SRHESMAWAMLATPQGTSSHDVIAAAEVVEPHAL---------QVLSAGKVFSAEGMNEQ 569 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---ILHEVHIQIH 629 + L + L RQ + ++ + E + ++E+ ++ Sbjct: 570 EKLNLIVDTLEFF----SLKRQIRALRLKMRESPTNKSQEFLEEISRMQVRMNEIGSRLS 625 Query: 630 QIE 632 + Sbjct: 626 TSQ 628 >gi|164688098|ref|ZP_02212126.1| hypothetical protein CLOBAR_01743 [Clostridium bartlettii DSM 16795] gi|164602511|gb|EDQ95976.1| hypothetical protein CLOBAR_01743 [Clostridium bartlettii DSM 16795] Length = 581 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 140/602 (23%), Positives = 259/602 (43%), Gaps = 31/602 (5%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86 ++ +N Y CPFH EKT SF + SK Y CF C+ GD +SF+ F+ Sbjct: 3 LEKSGSN-----YTGLCPFHSEKTGSFMVSKSKQIYKCFGCNAGGDVISFVMRWENVDFM 57 Query: 87 ESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 E+V+ LA G+ L + +KK + + A F+ +L ++ + YL Sbjct: 58 EAVKILARKCGITLDRNISEEEKKKIQEINKFREIHTEAARFYFANLLRTKNP-GYEYLR 116 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 +RG+ I+ F LGY+P+S SL +L KG+ + +++ GL+ S +DRFRNR Sbjct: 117 KRGLSDKIIKKFGLGYSPNSWNSLMNYLLSKGYDKTDLVKCGLITHKTESNKYFDRFRNR 176 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265 ++FPI + G+VI FGGR L KYLNSPET++F+K NLY + ++ Sbjct: 177 VMFPIFNYNGKVIGFGGRVL-DDSLPKYLNSPETLVFNKRMNLYGLNISKKGIKD----- 230 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 +ILVEGYMD++SL Q ++NVV++LGTALT Q +L+ + + +++ +D D Sbjct: 231 ------DTLILVEGYMDLISLYQNNIENVVATLGTALTIEQAKLIRRFAKNVIISYDSDQ 284 Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385 G A +AID+ L +V + L +DPD FI+ YG ++K I ES + Sbjct: 285 AGQNATLRAIDI---LLKADIKVKILNLKDCKDPDDFIKKYGFDGYKKAIEESDYYIKFK 341 Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 + ++ + +K + Y++ + D Sbjct: 342 IDLLKNKYNLKNDTQKMNFVEESTLMLKKLKSPIEKDLYAKYLSDLTNISVDSIRASIGI 401 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 N + + K+ E + L+ + + ++ Sbjct: 402 KVSRNYNNK----NNAKHTNVHRKIEQMSKIQDGYLKVETNFIKLLMENKELRNSVISDI 457 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + +E +++++++ K I ++ E + + + + Sbjct: 458 KSDEFSIDETKEIFNYIIK----NKELDKITI-DKIKSLNISEEYIKNINNIEIEEINTY 512 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 T ++ +++ + + + + ++ E + + + E ++ + E+ Sbjct: 513 TIDSTKEIIKKIRKNTIENEIKSMSIQIERLSKELDLLKKSNSNTKEVDDKIMKLSLEIL 572 Query: 626 IQ 627 + Sbjct: 573 KR 574 >gi|15893253|ref|NP_360967.1| DNA primase [Rickettsia conorii str. Malish 7] gi|81527800|sp|Q92FZ7|PRIM_RICCN RecName: Full=DNA primase gi|15620472|gb|AAL03868.1| DNA primase [Rickettsia conorii str. Malish 7] Length = 595 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF ++SK Sbjct: 1 MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL ERGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LKN + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N +K ++ + ++ + Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|42520228|ref|NP_966143.1| DNA primase [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034844|ref|ZP_01314757.1| hypothetical protein Wendoof_01000422 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|42409966|gb|AAS14077.1| DNA primase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 582 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 168/634 (26%), Positives = 291/634 (45%), Gaps = 70/634 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + + +S+L+G+ V +R + CPFH+EKTPSF +++KG YYCF C Sbjct: 4 IDIIKSKLLLSDLVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD F+S G SF E++++LA++ GV LP ++ K L +++A ++ Sbjct: 59 LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F ++ + YL +R I I+ FK+GYAP S L+E+L G ++ +I+ G Sbjct: 115 FAQK-----NQGVVDYLKQRKILPKIIDKFKIGYAPSS--GLKEYLNSSGIEDKILIDIG 167 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 L+ +D F +RLIFPI+S G+VI FGGR LS + KYLNSPE+ LF K +N Sbjct: 168 LVNK-----NFHDYFYDRLIFPIQSIAGRVIGFGGRALSSEQQPKYLNSPESQLFKKREN 222 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY AL+ ++K I++VEGYMD ++L QAG+ N V+ LGTA++ Q+ Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDAIALHQAGISNAVAPLGTAISAEQI 272 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365 + LW+ + I +C DGD G AA + +L L L PG + FV L +DP Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALLILEPGYTLKFVTLPSNKDPYDICNELE 332 Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Y K + S L +N P++ + LE +N I + + Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY ++ +E + N++ R KG L++ + + Sbjct: 393 RRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN--- 441 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +A +L + P IL +++ + + N E+++L + + E + Sbjct: 442 ---QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKSNLDKEALL 497 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q L + + + ++++ + +++ + +L ++ + Sbjct: 498 QELKQFNV---------------IKYVFEKTSVLNSQLNERKSAEIVWNNIVLLKELNAL 542 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 K+ + G + LI + ++ I +++ Sbjct: 543 RKERTEARLSGNLDLEERLIEQIKQIESSIQEMQ 576 >gi|78779244|ref|YP_397356.1| DNA primase [Prochlorococcus marinus str. MIT 9312] gi|78712743|gb|ABB49920.1| DNA primase [Prochlorococcus marinus str. MIT 9312] Length = 677 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 150/628 (23%), Positives = 271/628 (43%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + SK F Sbjct: 4 SIHPRTIQEVKEKADIVDVISEHIVLKKKGK-----EFVGICPFHDDNKPSMTVSPSKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 YYCFSC G+ + FL +F + V LA + + ++ +K+ + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRANFSDVVLSLAKKNNINVENLEGPQVEAYKKQLSRKEEL 118 Query: 118 IRLIEVATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ V ++F L N+ + + Y +R + I+ F+LG+AP+S L +L + Sbjct: 119 YKILRVTKNWFKSQLNNSLGVEAMKYLTSKRNLSKKIIDNFELGFAPNSWNDLFNYLSKV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F I+ +GL I DNS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPINLILASGLAISKDNSDKIYDRFRNRLIVPIHDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++K ILVEGY DV+SL G+ N V Sbjct: 238 SPESEIFEKGKMLFAFEKASSNIRK----------RDKAILVEGYFDVISLHSKGITNSV 287 Query: 296 SSLGTALTEYQLRLLWKL--SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I+L FD D+ G+ A + I V + + Sbjct: 288 ASLGTALNKYQISQLCRCTDNKNIILNFDSDNAGILATKRVIKEVESLSLHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L +DPD ++ + + LI S +D + +++ + + L + Sbjct: 348 LKDFKDPDEYLNSHTPEDYFNLIDNSSFWIDWEIDQIFKDKDLTKSEIFQSVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + R +Y Q + ++L + + + R K R + ++ Sbjct: 408 SKLPHSSTRTHYLQKVSEQLSKGQARLAIQFEQDLRNQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522 + E+ ++ ++ P + E ++ + +Q LW + Sbjct: 462 --NEISRREKNESEIIFYYLHCPDLRLFIRDEFLKREINGFNTSYIQSLWEAISKIEQNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQ---LDRQVRDAGLWSATTEAN-----IV 572 + + K + + + LL LD + + Sbjct: 520 LGLNYLNDLKQSNSQILQKEFSAINLISLLPDYLALDNLESSNKINIFVNPNELFLTLLS 579 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L+L +++ L R + IE Sbjct: 580 NPKDNLLGTLSLLEKYNSLKRCRHLIES 607 >gi|330996614|ref|ZP_08320492.1| DNA primase [Paraprevotella xylaniphila YIT 11841] gi|329572686|gb|EGG54319.1| DNA primase [Paraprevotella xylaniphila YIT 11841] Length = 710 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 160/723 (22%), Positives = 279/723 (38%), Gaps = 111/723 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +++ +V + N Y CPFHD++TPSF + SKG Sbjct: 2 IDRATVDRIMDAAQIVDVVSDFVTLRKAGVN-----YKGLCPFHDDRTPSFVVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G+ + F+ S+ ++++ LA + + + ++ + + + + Sbjct: 57 KCFACGKGGNAVHFIMEHEQLSYPDALRYLARKYNIEIKERELTEEEKQAQDERESMFVV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF L N D R Y RG I+ F+LGY+P R + + KG+ Sbjct: 117 NEWACQFFQDQLYNTVDGRAIGMAYFRSRGFRDDIIKKFQLGYSPSQRDACAREAKAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 EE ++ GL DN DRF R+IFP+ + G+V+AFGGR L KG +VKY N Sbjct: 177 KEEFLLSTGLCYKRDNG-QLQDRFFGRVIFPVHTLSGKVVAFGGRVLDAATKGVNVKYQN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++ K K LY F A + K LVEGY DV+S+ Q GV+NVV Sbjct: 236 SPESAIYSKKKELYGLFLAKQSIVKQ----------DLCFLVEGYTDVISMHQMGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 SS GTALT Q+R++ + + I + +DGD G++A+ + ID+ L G V +LL Sbjct: 286 SSSGTALTTEQIRMIHRFTENITVLYDGDAAGIKASERGIDM---LLAEGMNVKLLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ + E + + P + + L + + I+ I Sbjct: 343 GDDPDSFARKHNATEYQAYLNEHQVDFIKYKTDLLLHEAQGDPIKLSRLISSIVHTISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---------- 465 D+ R Y++ L + + S K+ + + + +++ Sbjct: 403 PDEITRSVYTRETATMLNMEERMLVAAISKEMAKAKEEKQKQRENERNRKHTQLPSSGQT 462 Query: 466 ------------------------------LMQSSLVKGKLSKKPSLREAA--------- 486 + S P++ E A Sbjct: 463 LSSLDQDSLPPPSPFPPSEEGIPPIPDDGTPAAPPVPNTPPSNNPAITENASTLSYIPGK 522 Query: 487 -------------LLLTLINHPAILQEQYQE-------LADIRYDNNELQK--------- 517 L+ LI + + + ++ + N LQ+ Sbjct: 523 GAEAMLFYRKELLLIQVLIRYGEKIICYAENEQGEEVPVSVAEFINYALQEDGLLFHNAL 582 Query: 518 ---LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIV 572 + E + + L +L D+ AN Sbjct: 583 HKHILQEAIDHIHEDGFSSERYFLNH-PDNHISMLAFELSGDKYQLSKYHSKHQKIANDE 641 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + L + ++ + ++I ++ Q E+ ++ E+ I + Sbjct: 642 ERLTELVPHLISDFKLAIVDEELKQILLKLRQPDILSRKEEYMEIMKHYKEMK-DIERTL 700 Query: 633 SQE 635 ++E Sbjct: 701 ARE 703 >gi|157829160|ref|YP_001495402.1| DNA primase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933889|ref|YP_001650678.1| DNA primase [Rickettsia rickettsii str. Iowa] gi|157801641|gb|ABV76894.1| DNA primase [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908976|gb|ABY73272.1| DNA primase [Rickettsia rickettsii str. Iowa] Length = 595 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF ++SK Sbjct: 1 MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL ERGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LKN + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N +K ++ + ++ + Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISCNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|120610094|ref|YP_969772.1| DNA primase [Acidovorax citrulli AAC00-1] gi|120588558|gb|ABM31998.1| DNA primase [Acidovorax citrulli AAC00-1] Length = 674 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 231/479 (48%), Gaps = 26/479 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P+ FI++LL + + +++G+YV + N + CPFH EK+PSF + SK Sbjct: 1 MSIPQSFIQELLSRVDVVDVVGRYVQLKKGGAN-----FMGLCPFHGEKSPSFSVSPSKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE------KIQ 114 FY+CF C G+ +SFL G F+E+VQ LA G+ +P D +++E + Q Sbjct: 56 FYHCFGCGKNGNAISFLMEHAGMGFVEAVQDLAQQVGLQVPQDDVSPQERERAAAQRQKQ 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L ++E A + + L+ + +R Y RG+ + + LGYAP+ SL Sbjct: 116 ATLTDVLEKAGEAYRRHLRES--QRAIAYFKGRGVSGAVAKRYGLGYAPEGWRSLASVF- 172 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + E+GL+I + YDRFR+R++FPIR+ +G+ I FGGR L + KYL Sbjct: 173 -PEYDNPLLHESGLVIVNEEDGKRYDRFRDRVMFPIRNVKGECIGFGGRVL-GDDKPKYL 230 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET +FHKG+ LY F A ++ + ++ EGYMDV++L Q G N Sbjct: 231 NSPETPVFHKGRELYGLFEARAAIR----------EHGYALVTEGYMDVVALAQLGFPNA 280 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA T + L++ + +V FDGD G RAA KA+D L + V F+ L Sbjct: 281 VATLGTACTPDHVHKLFRFTDTVVFSFDGDAAGRRAARKALDGALPYATDTRSVKFLFLP 340 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPDSF+R +G AF + + ++PL L + E + RA + + + Sbjct: 341 AEHDPDSFVRAHGTDAFARHVQGAMPLSRFLVEVVGEGCDLGLAEGRARMAANARPLWTA 400 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + D L+ + + Q + + P+ Sbjct: 401 LPDGALKRQLLGELAELAQLAASDLSELWAAPAHPAGGGRQAAGGSAPTGAPAYDEAPP 459 >gi|256830225|ref|YP_003158953.1| DNA primase [Desulfomicrobium baculatum DSM 4028] gi|256579401|gb|ACU90537.1| DNA primase [Desulfomicrobium baculatum DSM 4028] Length = 567 Score = 309 bits (792), Expect = 7e-82, Method: Composition-based stats. Identities = 160/624 (25%), Positives = 273/624 (43%), Gaps = 62/624 (9%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ + + I + + I ++IG++V+ A CPFH E PSF N Sbjct: 1 MSTFDQGLIAQIKARLRIEDVIGRHVELRPAGN-----RLVAPCPFHQETKPSFSVNPEG 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 GFYYCF C GD + F A+ G F+E+V+ LA AG+ + + E ++ + Sbjct: 56 GFYYCFGCQASGDIIEFYRAINGLEFVEAVEALAREAGLEVRRRPEYMAPGEISRSQCLD 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + +A F+ L A + Y+ RG+ S +E F LG+AP LR+HLR +GF Sbjct: 116 MHALAAVFYREVLGRAPGQAARDYIARRGLASEIVERFCLGWAPAGWNELRDHLRGRGFP 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E +AGL+ + YDRFR RLIFPI + Q +AFGGR+L G+ KYLNS ET Sbjct: 176 EAVAEKAGLVSKS-AKGSYYDRFRERLIFPIMNLSAQTVAFGGRSLVDGDGPKYLNSSET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++ KG++LY + A + + S ++L EGY+DVLSL Q G +N LG Sbjct: 235 PIYTKGEHLYGLYQARRAM----------SHSKSVLLTEGYVDVLSLHQFGFENSCGVLG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q+ L L ++ L FDGD+ G +AA ++ ++ L G + +L+ GED Sbjct: 285 TALTPEQVHRLSGLVGQVDLVFDGDNAGRKAALRSAEM---ILTQGLKCRVLLMPEGEDV 341 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS ++ G+ + +L +++ +D ++ + N+S + ++ +K Sbjct: 342 DSVLQKNGRESLLELSAQAVDGLDYCLRQLSANQSPKD------VLNWATGFMSRLKKLD 395 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + YY + L + G +A R ++ +L ++ Sbjct: 396 WKSYYLPKLAAGLGLSETELRRTLGEKGADATASAPARLEQCKPSQLDKN---------- 445 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 LL + P + ++ + WS +F P E+ Sbjct: 446 -------LLAFAVRFPEYHGQLHELGLGEALATERGRIFWSKIF-------GVSPHEVLS 491 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R+ + ++ T+ + D R + + + R R E + Sbjct: 492 RMDQGEKQFYVQ-----------CQMRTDVTVDDGRSEW-DEVQDFLRQTGQRRDLESLN 539 Query: 600 KQIAQVTAKGEAEKTAILISILHE 623 + + G+ ++ L++++ Sbjct: 540 SGLRKARQSGDFQEELRLLALIQA 563 >gi|238651105|ref|YP_002916963.1| DNA primase [Rickettsia peacockii str. Rustic] gi|238625203|gb|ACR47909.1| DNA primase [Rickettsia peacockii str. Rustic] Length = 595 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 172/633 (27%), Positives = 300/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF ++SK Sbjct: 1 MRVAPEFYEFLRNRINISDVVRQKVALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL ERGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILHYLHERGITEETLKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LKN + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N +K ++ + ++ + Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIILEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 555 IT--INSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|150008464|ref|YP_001303207.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|149936888|gb|ABR43585.1| DNA primase [Parabacteroides distasonis ATCC 8503] Length = 705 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 153/710 (21%), Positives = 272/710 (38%), Gaps = 106/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465 R Y + ++ Q + E + +N + Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462 Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481 ++ Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521 E ALL ++ + + +E D+ + +++ Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPTFKQMLDE 582 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L L D+ D Sbjct: 583 AAEHCQNEGFMATRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 + + + ++I+ +I + KG+ E L+ + L+E+ Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691 >gi|210633988|ref|ZP_03297937.1| hypothetical protein COLSTE_01855 [Collinsella stercoris DSM 13279] gi|210158986|gb|EEA89957.1| hypothetical protein COLSTE_01855 [Collinsella stercoris DSM 13279] Length = 465 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 144/450 (32%), Positives = 227/450 (50%), Gaps = 21/450 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + L+ + V+ R D W CCPFH EKTPSFH + + Sbjct: 2 ISDEDKNKVRDATDLVALVQETVELKPRGN----TDLWGCCPFHGEKTPSFHVIPATQVW 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +++ G SF ES++ LA AG+ L D ++ + LI + E Sbjct: 58 HCFGCGEGGDAFTYVMKREGLSFPESIRYLADRAGIELEE-DRSFKRSGTKRNRLIEVCE 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++F+H L +D R Y R +D+ ++LG+AP L HL KGF+ ++ Sbjct: 117 ETSEFYHTLLMRGKDARGREYCKGRELDADTCRKYRLGFAP-GHGMLVRHLGSKGFTPQE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241 +I+A + N DRF +R++FPI +G+ IAFGGR L K ++ KYLNS ET + Sbjct: 176 MIDANVAFRSRNG-GLVDRFFDRVMFPIMDEQGRCIAFGGRALDKEKTNAKYLNSSETPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 FHKGKNLY F A +++ + + +I+VEGY+ +S +AG++N+V+ LGTA Sbjct: 235 FHKGKNLYGFNWAKDHI----------VARNEVIVVEGYISAMSCWKAGIENIVAVLGTA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE ++ L + + +I+ FDGD G +AA +AI + V+L G+DPD Sbjct: 285 LTEAHVKTLTRFTKKIIYMFDGDAAGQKAARRAIQ---FIEKDDIDLRCVILPDGQDPDD 341 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+R G +L+ S+PL+D ++ + E +TP RA+ I ++ + Sbjct: 342 FVRANGGDKLRELLDNSIPLMDFVFGKLEEESDISTPGGRAKAMKSALELIYPLRASYMI 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 Y I DRL + + R + Sbjct: 402 DGYYMQIADRLGLDVEMIRSNAGKVFREVQ 431 >gi|225868706|ref|YP_002744654.1| DNA primase [Streptococcus equi subsp. zooepidemicus] gi|225701982|emb|CAW99543.1| DNA primase [Streptococcus equi subsp. zooepidemicus] Length = 609 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 159/635 (25%), Positives = 276/635 (43%), Gaps = 49/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + ++ I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 17 AIDKEMISQIKHNVNIVDVIGEVVHLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119 ++CF C GD F+ F+ESVQ +A AG+ + V + +K+ LI Sbjct: 72 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTVAPSQTSLSQKQHPHQALID 131 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L +R YL +RG+D IE F++G AP+ L + L +K + Sbjct: 132 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEHFRIGLAPNEMDYLYQALSKK-Y 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 +E ++ +GL + S YD FR+R++FP+ +G +IAF GR ++ + KY Sbjct: 191 TEAQLTASGLFHVSEQSNAIYDAFRHRIMFPLCDDKGNIIAFSGRIWAREDIEKQQAKYK 250 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T+LF+K LY+ A + K + + L+EG+MDV++ +AG N Sbjct: 251 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNT 300 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT +R L +L+ ++VL +DGDD G A K+++L+ + V + Sbjct: 301 VASMGTALTPEHVRHLKQLTQKVVLTYDGDDAGQNAIAKSLELLADFQVE-----IVKIP 355 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A KL+ S + + + + H+ I Sbjct: 356 NRMDPDEFVQQHSPEALAKLLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 415 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + D L + + R + + L+ +L Sbjct: 416 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQSLQGQTSQSKASLV--TLPIN 473 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E+ LL L++H +L E D +D LQ L+ L + Sbjct: 474 KSITALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 522 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ +L +++++ + E ++ + + L K+ R L RQ Sbjct: 523 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 578 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KQI + ++KG+ + + ++ Sbjct: 579 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 609 >gi|323142715|ref|ZP_08077432.1| DNA primase [Succinatimonas hippei YIT 12066] gi|322417510|gb|EFY08127.1| DNA primase [Succinatimonas hippei YIT 12066] Length = 607 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 149/630 (23%), Positives = 269/630 (42%), Gaps = 40/630 (6%) Query: 2 NYPRDFI-KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 +FI L+ + I IGQYV R+ +N +Y CCPFH EKTPSF SK Sbjct: 3 RIAVNFIRDRLIPAVNIEAFIGQYVTLKRQSSN----NYTCCCPFHHEKTPSFVVTPSKQ 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIR 119 +YCF C G+ + F+ SF+E+V+ +A AG+ + +K Sbjct: 59 MFYCFGCKEHGNAIDFVMKFKNLSFVEAVEEVAQFAGLNVEYEQGSGGFEKADTYKLYYE 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ +F L ++ + + Y++ +R + I +LGYAPDS + + Sbjct: 119 LMDRCASYFVKCLSSSPEGKD-YFIKKRELSEDTIIKARLGYAPDSWDYIHNIAKNTDEY 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ I L + D SY FR R++ PI RG+VI+FGGRTL KYLN+ E+ Sbjct: 178 KKLIE---LGMVVDKGDRSYAMFRGRVMIPIIDGRGRVISFGGRTL-GDAKPKYLNTAES 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K L+ + L + N + I++VEGYMDV++L Q G V+SLG Sbjct: 234 PIFRKRHELFGLYETLQANR---------NRPARIVIVEGYMDVIALRQFGCSFAVASLG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q+ L+++ + ++V C+DGD G AA+ A++ L + F L DP Sbjct: 285 TATTKEQMELMFRYTKQVVCCYDGDFAGRNAAWHALETATAVLKADREIRFAFLPPEHDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS +R G +AF + + S+ + L K ++ + P +++ + I I + Sbjct: 345 DSLVRAEGLSAFTRTLDASVSYPEFLIKHISDKYDLSDPGQKSPFLNEVLYFIRRIPEMT 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ + + L + + E + ++ + +++ S+ K Sbjct: 405 LQAVCVSELARK-AGLEEDLLYEMLKSVKLNSRDEKEWEKEA-------GSMKKEGTVNL 456 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN-------NELQKLWSFLFSDFVEQKYF 532 + L+ ++ P ++ Y+ + + L S + E+ Sbjct: 457 LTTPMRRLIAFILQQPTLVSTVYERFNLDKLQHLCKDAAIKGNVDL-SLFLNLIKEKPDI 515 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 P + + + ++ L + + +E + VR L L Sbjct: 516 TPAGFIETVRGSVREKYVRNLI-EAEFIPKKADGSEFSPE-VRADLFSKLIKETLGMPLK 573 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILH 622 ++ E + ++ + E + L++ + Sbjct: 574 QEIERL--RLRGDSITKEEMEAMSLLNRML 601 >gi|86148898|ref|ZP_01067144.1| DNA primase [Vibrio sp. MED222] gi|85833316|gb|EAQ51528.1| DNA primase [Vibrio sp. MED222] Length = 339 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 125/349 (35%), Positives = 195/349 (55%), Gaps = 23/349 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I +++ V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDIVDARVKLKKKGKN-----YGACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116 +CF C V G+ + F+ F+E+++ LA+ G+ +P E + + + Sbjct: 60 HCFGCGVHGNAIDFIMEFERLDFVEAIEELASFLGLDVPREQRSGEISTAPRANSEQKRN 119 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L L+ ++F+ LK + +K YL RG+ ++ F +GY D +R++ Q+ Sbjct: 120 LYDLMGGISNFYRSQLKISANKPAIDYLKNRGLSGEIVQKFGIGYVADEWDLVRKNFGQQ 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++ ++ G+LI+ D YDRFR R++FPIR RG+VI FGGR L + + KYLNS Sbjct: 180 KEAQDMLVTGGMLIENDKGNR-YDRFRGRVMFPIRDRRGRVIGFGGRVL-EDGTPKYLNS 237 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKGK LY + L + I++VEGYMDV++L Q GV V+ Sbjct: 238 PETPIFHKGKELYGLYEVLQAYR----------EPPQILVVEGYMDVVALAQYGVDYSVA 287 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 SLGT+ T +++L++ + +V C+DGD G AA++A++ L +L G Sbjct: 288 SLGTSTTGDHVQMLFRQTSTVVCCYDGDRAGKEAAWRALENALEYLKTG 336 >gi|149175262|ref|ZP_01853884.1| DNA primase [Planctomyces maris DSM 8797] gi|148845871|gb|EDL60212.1| DNA primase [Planctomyces maris DSM 8797] Length = 636 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 131/646 (20%), Positives = 257/646 (39%), Gaps = 38/646 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++F + + + L+ + V D+ CPFH++ PS + + Sbjct: 5 FDQNFKELVRQRTSLVELVSESVQLIPNGR-----DFKCLCPFHNDHNPSLVVYPDRETW 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEK--IQTDLI 118 C+ C+ GD ++ F E+++ LA A + +P + +T L Sbjct: 60 RCWVCNTGGDCFEWVQKYDDVEFFEALKILAERAHLEMPQLARQSNGAPRSNIVEKTSLF 119 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +++ A FH L N R+ + Y +++RG I+ F+LG+ P+ L R Sbjct: 120 DVMKWAEQQFHDCLMNTREGEMARRYLMEDRGYTEETIQQFRLGFHPNDWQWLVNRSRGH 179 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---KY 233 + E + EA L+ + + D F NR++FP+R R +V+AFGGR L + KY Sbjct: 180 -YPESLLSEARLIFKKEGHSRYSDYFVNRVMFPVRDERKRVVAFGGRILPGSAAEGIAKY 238 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 NSPE+I+F K K L+ + ++ + +++VEGY D ++ Q GV N Sbjct: 239 FNSPESIIFTKSKLLFGLDESRQTIR----------ETETVVVVEGYTDCITAHQFGVTN 288 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTALTE + L +L+ ++VL FDGD G +AA +++ + + + L Sbjct: 289 AVATLGTALTETHVSYLKRLARKVVLVFDGDTAGQQAAERSL---TKFIAQEVDLRILTL 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G+DP F+ G ++LI ++ + + + D + + + + Sbjct: 346 PAGKDPAEFLEEQGAEQLKQLIADAPEAWNFKLNVCVQKFGLESIDGQHRILEEMLELLA 405 Query: 414 HIKD---QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-----ARHRDQKGPSQR 465 + + + + DRL S + + + P Sbjct: 406 SSPNLTGKIREDIILRKLADRLGLNESVVRKRLSEVKQKKSPSLNTNLSSSESYSTPRPT 465 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + S K + E+ LL + +P + Q ++ N +L+ L+ Sbjct: 466 DTSGNFQEADNSTKDNQLESELLEIIFVYPECVTRIQQLISPENLKNPQLRFLYQLCVDL 525 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALA 583 E I R+ + +L+ ++D R+ + + + A + + + ++ Sbjct: 526 TEEGLVLDINRILDRIADPDLKQLVVKIDAHAREKAVHAKLLDDPAPLEGIPHFLKHSIK 585 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 K ++ + L+ E H + + Sbjct: 586 NLKWREEREHHEKTKGLLFQNAQNQSLNSDAKELLRKASEFHQKRN 631 >gi|261855082|ref|YP_003262365.1| DNA primase [Halothiobacillus neapolitanus c2] gi|261835551|gb|ACX95318.1| DNA primase [Halothiobacillus neapolitanus c2] Length = 559 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 178/596 (29%), Positives = 269/596 (45%), Gaps = 53/596 (8%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ P FI D+L + LI V ++ +Y ACCPFH EKTPSF+ N K Sbjct: 4 MSFIPESFIDDVLARTDLVELIHAQVPLKKKGK-----EYAACCPFHQEKTPSFYVNPDK 58 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 FY+CF C G+ +SFL F +++ LA AG+ LP V K + Q ++ Sbjct: 59 QFYHCFGCGAHGNAVSFLMDYEHRDFRGAIEELATRAGMTLP-VSEVDHKALEEQAAMLD 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A F L+ + YL +RG++ +F LG+AP+ L H Sbjct: 118 SMSFANAHFKRQLRAH--QEAIDYLKQRGVNGTTAALFDLGFAPNG-NLLLGHCESPPKM 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++++E GL I + YDRFR R++FPIR RGQ+I FGGR L GE KYLNSPE+ Sbjct: 175 RDELLELGL-IVQKDDGEQYDRFRRRIMFPIRDKRGQIIGFGGRILGPGEP-KYLNSPES 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHKG+NLY + A + R +I+VEGYMDV+ L Q GV+NVV+++G Sbjct: 233 RLFHKGQNLYGLYEARLDDARPAR----------VIIVEGYMDVVMLAQHGVRNVVATMG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q + L++ SP +V CFDGD G RAA KA+ L HL G + F+ L GEDP Sbjct: 283 TATTDEQTQSLYRFSPSLVFCFDGDAAGRRAATKALHAALPHLTDGRDLRFLFLPDGEDP 342 Query: 360 DSFIRCYGKTAF-EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DSFI+ GK+AF E++ SL + + + + A+ + I + D Sbjct: 343 DSFIQAKGKSAFIEQIEHHSLSFDNFILQLLDQMEPGQDTAAMAKKSKLGNDWIRTLPDG 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ + I + R + + +L + K Sbjct: 403 ALKRITQRRINEHTGV---------------------WRAAYKKNTGPTEPTLPRNKPQS 441 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVE------QKY 531 ++ +L ++ HP +LQ + A E Q L + + + + Sbjct: 442 --YAKQTLILSIVLKHPDLLQRVLEPQAWFNSRVPEGFQLLATQPRARWAQSASELWGAE 499 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + E + + S + A+ RQ + +A ++ Sbjct: 500 ETKTALAIEFQGIERAETAQNILEDTLIQLHRSESDSASKQASRQALARFMAEQEK 555 >gi|123966255|ref|YP_001011336.1| DNA primase [Prochlorococcus marinus str. MIT 9515] gi|123200621|gb|ABM72229.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. MIT 9515] Length = 678 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 153/628 (24%), Positives = 278/628 (44%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + +K F Sbjct: 4 SIHPRTIQEVKDKADIVDVISEHIVLKKKGK-----EFVGICPFHDDNKPSMTVSPAKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCFSC G+ + FL +F + V LA + + VD ++ K + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRNNFTDVVLSLAKKNDINVINVDGPQQEVYKKQLSRREEL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ V D+F L N+ K Y +R ++ I F+LG+AP+S L +L + Sbjct: 119 YKILRVTKDWFVSQLNNSLGKEALNYLTSQRNLNIKNINDFQLGFAPNSWNDLFNYLSKV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F + I+ AGL++ +NS YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPLKLILSAGLVVSKENSDKVYDRFRNRLIVPIFDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ +F KGK L+ F A + ++KS + ++VEGY DV+SL G+ N V Sbjct: 238 SPESEVFEKGKMLFAFDKASSNIRKSDKA----------VVVEGYFDVISLHAKGITNSV 287 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I++ FD D+ G+ A + I+ V + + Sbjct: 288 ASLGTALNKYQISQLCRCTDSKNIIINFDSDNAGILATKRVINEVEILSLHDQINLKILQ 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + +DPD +++ + LI + +D + EN+ + D + L + Sbjct: 348 IKSFKDPDEYLKRNTPEDYINLIDNASFWIDWEIDQIFENKDLSKSDIFQNVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + R +Y Q + +RL + + R K R + ++ Sbjct: 408 SKLPQSATRTHYLQKVSERLSMGQARLAIKFEEDLRKQVKGFRWHGRSKKFEQP------ 461 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFL------- 522 + E+ ++ I+ P +EL +++ ++ +W + Sbjct: 462 --NEISQREKNESEIIYYYIHCPEYRLFIREELLKREIEKFNTEYIRLIWDSISTIEGNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV------ 574 + + + ++++ LL L T N ++ Sbjct: 520 FGSNYLDDLRNSNNQKLNNDFISLNLISLLPDHLALNNLEVLNKINTFINPDELFLTTLK 579 Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEK 600 + L+L +R++ L R + IE Sbjct: 580 NPKHNLLGTLSLLERYKSLKRCRHLIES 607 >gi|116328272|ref|YP_797992.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330996|ref|YP_800714.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116121016|gb|ABJ79059.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124685|gb|ABJ75956.1| DNA primase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 598 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 160/643 (24%), Positives = 282/643 (43%), Gaps = 54/643 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ +DFI + +PI + I ++V +R N + CPFH EK+PSF+ + K Sbjct: 1 MSNKKDFIDRIHREVPIESYISRFVPLKKRGKN-----FLGLCPFHQEKSPSFNVSAEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C GD + F+ F S++ L+ +G+PL + K + L ++ Sbjct: 56 FYYCFGCKASGDLIRFVMDYERVDFSRSLEILSEYSGIPLQEKNSKNAEISDF---LYKI 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179 + ++++ H L K YL R I+ I +F LGYAP+ + ++E L+ K Sbjct: 113 NQKVSEYYQHLLHTPIGKNAFDYLKSREIEDSEIRIFGLGYAPEGFETLMKEVLKTKDEI 172 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 I L + YD FR+R++FP+ G+ IAF GR L G+ KY+NSP + Sbjct: 173 AGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTIAFSGRILGPGKEAKYINSPAS 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 I+F K + YNFF A ++K + ILVEGY+DV+ L + +NV++S+G Sbjct: 233 IIFDKSRTFYNFFRAREGVRK----------TGEAILVEGYLDVIGLVRRDYENVIASMG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+TE +R L K + RI DGD G + A +A ++ L G + VLL G+DP Sbjct: 283 TAITENHIRTLKKFAERITFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418 + + KL+ E + + + E+ P+ + + +L + + + Sbjct: 340 FDLAKSLSRPQLNKLLSEQIQGSEFVIGELLESADSRALPERKRKALQNLYSFTQTLNRE 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + ++ ++L + + G + GP + S L + + Sbjct: 400 TDKQFFLGLGANKLGISMDAVLRDFKGG---------TSAKNGPVNADISSKLKEVQEIS 450 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 P+L E ++ L+ H + +E++ + + + LW +L++ + + P +I Sbjct: 451 APALDCERKIISMLVKHTGLFS-YAEEISSMEFMDVTSSYLWDYLYTVYTGEGEISPVQI 509 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++L + + + R LL ++K Sbjct: 510 LASELPEDLKQILAPYLLEEYEKEEPEELHKV----------------FRLLLLQQKKFR 553 Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQEA 636 IE++I ++ K E T + + L E + I +Q A Sbjct: 554 IEERIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRNQSA 596 >gi|296120486|ref|YP_003628264.1| DNA primase [Planctomyces limnophilus DSM 3776] gi|296012826|gb|ADG66065.1| DNA primase [Planctomyces limnophilus DSM 3776] Length = 677 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 139/589 (23%), Positives = 230/589 (39%), Gaps = 41/589 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I LIG+ V + CPFHD+ PS N + Y C Sbjct: 12 DEIKEQVRARTDIVQLIGETVSLQPA---RGGRTFQCLCPFHDDHNPSMQVNPERQTYRC 68 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDLIRL 120 + C+ GD S++ SF E++ LA AG+ LP E ++DL + Sbjct: 69 WVCNEGGDCFSYVMKHDNLSFPEALTLLAEKAGIELPRRSRNEAGFGESSGPKKSDLFDV 128 Query: 121 IEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A+ F LK++ YL R + +E F LGY PD + L+E R + Sbjct: 129 LVWASREFQQCLKSSALGAPAREYLASRQLKPEIVEQFALGYHPDDWHWLQERARGRFSV 188 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLN 235 + + L+ DN YD F +RL+FPI R + +AFGGR + K ++ KY N Sbjct: 189 DSLAVV-RLVGARDNGPGHYDFFVDRLLFPICDERSRPVAFGGRIIPGRPAKEDAPKYWN 247 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ LF K + Y A +++ + +++ EGYMD + Q G++N V Sbjct: 248 SPESPLFSKSRLCYGLDQAREAIRR----------TETVVVTEGYMDCIKAHQHGLKNAV 297 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++LGTALTE +++L +L+ + VL +DGD GL AA +++ L + + L Sbjct: 298 ATLGTALTENHVQVLKRLARKFVLIYDGDTAGLNAAERSL---PRFLAQDVDLRILTLPE 354 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN---CI 412 G DPD F+ G A E+ I E+ ++ +R E + D R + L Sbjct: 355 GLDPDEFLEAKGLAALEQAIQEAPEALEFKLRRSIERFGTGSVDARQRVTDELLETMALS 414 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + + RL L + + + R ++ S + Sbjct: 415 PGLAGSVRERNLLSRLTSRLG-LSESLLQKRLRDLRVEQRFKNVSQPPRKVDPAESSIID 473 Query: 473 KGKLSKKP-----------SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + ++ L E+ L+ P Q + + + + LW Sbjct: 474 DERPLQEQVNSLQRSTAGDDLLESEFFRLLLQSPDDFLWVSQRVGSDDFHHPAFRHLWCV 533 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 E + + LL L A + E+ Sbjct: 534 CLDVVEHGLLPSFELLLAQTESPALKGLLAWLGESHLSAAELLSLQESA 582 >gi|262383311|ref|ZP_06076447.1| DNA primase [Bacteroides sp. 2_1_33B] gi|262294209|gb|EEY82141.1| DNA primase [Bacteroides sp. 2_1_33B] Length = 705 Score = 309 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 153/710 (21%), Positives = 273/710 (38%), Gaps = 106/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-TYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465 R Y + ++ Q + E + +N + Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPSVQSPVNTIPEYPD 462 Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481 ++ Sbjct: 463 FPGYQPYTQEEANTLPPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521 E ALL ++ + + +E D+ + +++ Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L L D+ D Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 + + + ++I+ +I + KG+ E+ L+ + L+E+ Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691 >gi|325473906|gb|EGC77094.1| DNA primase [Treponema denticola F0402] Length = 595 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 158/638 (24%), Positives = 273/638 (42%), Gaps = 55/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + I +L+ Y ++R N +W CCPFH+EKTPSF+ K Sbjct: 3 KISSKTVDAVTEMTDIVSLVENYTRLEKRGAN-----WWGCCPFHNEKTPSFNVVPDKKM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 YYCF CH G ++FL + SF+E+V+RLA AG+ + E KI+ ++ Sbjct: 58 YYCFGCHKGGGTINFLMEMEKLSFMEAVERLAKNAGIEVIYEGGSYVPDEGAKIKDQILD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + FH L +N K+ YL R + IE F LGY+P R L L K + Sbjct: 118 LYDKVAGSFHFLLTQNPTGKKALDYLLSRNVSPEIIEKFNLGYSPKDRKWLHSFLLSKNY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ + + GL + + +RL+FPI G+ IAFGGR L KYLNS + Sbjct: 178 SQDFLEKTGLFSKNYKNIAFFS---DRLMFPICDRHGKTIAFGGRILEGD-GAKYLNSSD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + KG+ ++ F AL ++KS +IL EGYMDVL+ QAG++N V+ L Sbjct: 234 MPQYKKGETVFAFHHALAEIRKS----------KSVILCEGYMDVLAFFQAGIENAVAPL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q++LL + L FD D G A+YKAI + G V + + G+D Sbjct: 284 GTALTEDQVKLLKSFAETFYLAFDSDKAGQEASYKAIKICRSM---GVNVRVLYMKDGKD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P ++ GK + L+ ++ D L + + ++P+ +A L I ++ Sbjct: 341 PSEILQKKGKEGLKFLLECAIVDDDYLIQIASMRFDISSPEGKASAIAFLFPYIEVLESD 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + Q +++ + ++ VK K Sbjct: 401 IQRESAISKLSSAFGVSQQAIFSDYVNREKKALRHIVD--------------EVKQKPVD 446 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+L + + + +L+ +++ + L+ L + + + + Sbjct: 447 IRMNAELRLVLAVTANTDLFSRLRSQLSPDDFEDFYARHLFIVLEECYRDG-AYTYANLM 505 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E++ Q ++ + + + + +L +QK++I Sbjct: 506 HRCGEEKLKEIVSQ------------TISKGEFAENSEKIVDDGINFIKQNVLQKQKDKI 553 Query: 599 EKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633 ++ + + + T L+ + IQ+++++ Sbjct: 554 IGRLRLLHGEKNIDTVNLTKELMEEKKSIDIQLNKLKG 591 >gi|42526853|ref|NP_971951.1| DNA primase [Treponema denticola ATCC 35405] gi|41817168|gb|AAS11862.1| DNA primase [Treponema denticola ATCC 35405] Length = 595 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 158/638 (24%), Positives = 272/638 (42%), Gaps = 55/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + I +L+ Y ++R N +W CCPFH+EKTPSF+ K Sbjct: 3 KISSKTVDAVTEMTDIVSLVENYTRLEKRGAN-----WWGCCPFHNEKTPSFNVVPDKKM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 YYCF CH G ++FL + SF+E+V+RLA AG+ + E KI+ ++ Sbjct: 58 YYCFGCHKGGGTINFLMEMEKLSFMEAVERLAKNAGIEVIYEGGSYVPDEGAKIKDQILD 117 Query: 120 LIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + FH L +N K+ YL R + IE F LGY+P R L L K + Sbjct: 118 LYDKVAGSFHFLLTQNPTGKKALDYLLSRNVSPEIIEKFNLGYSPKDRKWLHSFLLSKNY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S++ + + GL + +RL+FPI G+ IAFGGR L KYLNS + Sbjct: 178 SQDFLEKTGLFSKNYKKMAFFS---DRLMFPICDRHGKTIAFGGRILEGD-GAKYLNSSD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + KG+ ++ F AL ++KS +IL EGYMDVL+ QAG++N V+ L Sbjct: 234 MPQYKKGETVFAFHHALAEIRKS----------KSVILCEGYMDVLAFFQAGIENAVAPL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q++LL + L FD D G A+YKAI + G V + + G+D Sbjct: 284 GTALTEDQVKLLKSFAETFYLAFDSDKAGQEASYKAIKICRSM---GVNVRVLYIKDGKD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P ++ GK + L+ ++ D L + + ++P+ +A L I ++ Sbjct: 341 PSEILQKKGKEGLKFLLECAIVDDDYLIQIASMRFDISSPEGKASAIAFLFPYIEVLESD 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + Q +++ + ++ VK K Sbjct: 401 IQRESAISKLSSAFGVSQQAIFSDYVNREKKALRHIVD--------------EVKQKPVD 446 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E L+L + + + +L+ +++ + L+ L + + + + Sbjct: 447 IRMNAELRLVLAVTANTDLFSRLRSQLSPDDFEDFYARHLFIVLEECYRDG-AYTYANLM 505 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E++ Q ++ + + + + +L +QK++I Sbjct: 506 HRCGEEKLKEIVSQ------------TISKGEFAENSEKIVDDGINFIKQNVLQKQKDKI 553 Query: 599 EKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633 ++ + + + T L+ + IQ+++++ Sbjct: 554 IGRLRLLHGEKNIDTVNLTKELMEEKKSIDIQLNKLKG 591 >gi|15604689|ref|NP_221207.1| DNA primase [Rickettsia prowazekii str. Madrid E] gi|3861384|emb|CAA15283.1| DNA PRIMASE (dnaG) [Rickettsia prowazekii] Length = 616 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 298/633 (47%), Gaps = 52/633 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++F + L I IS+++ Q + R+ +N Y CPFH EKTPSF +DSK Sbjct: 24 MRVTQEFYEFLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 78 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 79 FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 138 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL +R I I+ F +G+AP + + L +K Sbjct: 139 LELANKFFRTQLT----PEILNYLYKRNITETTIKEFSIGFAPRNNKFEKFFLDKKIDIT 194 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I + Y+ F NR+ PIR+ +++ FGGR L E KYLNS ETI Sbjct: 195 KLGQAGL--IGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVL-GNELPKYLNSFETI 251 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K LY A++ K R ILVEGY DV++L QAG VV+SLGT Sbjct: 252 VFQKSDILYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFNEVVASLGT 301 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 302 SVTESHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 361 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E ++F T +E+A LE +LK+ N I D L Sbjct: 362 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKNFRTAEEKANLEKNLKDYCNKISDSNL 421 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N + +K + + + Sbjct: 422 KASYYRFFKDQIWQ------------------NLVTKQKKIITPSSNSVLIASSHCYSEL 463 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A LI P + E + ++ ++N L++ ++ ++ ++ K EI Sbjct: 464 EMLEHAFCALLIKFPIMFAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VKENEIT 522 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + LYK++ L++ Q+E Sbjct: 523 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 577 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + EK + + ++ ++ + Sbjct: 578 IS----INSNHDFEKVLLYKKEIIKIVNELQVL 606 >gi|91204870|ref|YP_537225.1| DNA primase [Rickettsia bellii RML369-C] gi|157826500|ref|YP_001495564.1| DNA primase [Rickettsia bellii OSU 85-389] gi|123388158|sp|Q1RKH8|PRIM_RICBR RecName: Full=DNA primase gi|91068414|gb|ABE04136.1| DNA primase [Rickettsia bellii RML369-C] gi|157801804|gb|ABV78527.1| DNA primase [Rickettsia bellii OSU 85-389] Length = 599 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 177/633 (27%), Positives = 298/633 (47%), Gaps = 49/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q V R+ G+Y CPFH EKTPSF +DSK Sbjct: 1 MKLAPEFYEVLRNRINISDVVRQKVVLTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ +S +LA GV +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNDSAIKLATDYGVEIPKLTQKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL+ER I + I+ F +G+AP + + + Sbjct: 116 LELANKFFKSQLT----PEILNYLNERNITNETIKEFSIGFAPRGNKFEKFFHDKNITNV 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + D Y F NR+ PIR+ +++ FGGR + +G KYLNSPET+ Sbjct: 172 QLGKAGLIGKREDG--EIYSLFSNRITIPIRNIYNKIVGFGGRVIGQG-LPKYLNSPETV 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K ++ ILVEGY DV+SL QAG VV+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NYSILVEGYFDVISLHQAGFSEVVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDSAGIKASVRTINLALPLINSEKKISFIRLPTGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + L +M+W+ E ++F T +++A LE +LK+ + I D L Sbjct: 339 DAVNKNGVDFFTKLIDTRISLSEMIWQIEYAGKNFKTAEDKANLEKNLKDYCSKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + +D++ Q N + QK ++ + + L + Sbjct: 399 RASYYRFFKDQIWQ------------------NLVTKQQKTVAKNV--NLLPLSSGYSEL 438 Query: 481 SLREAALLLTLINHPAILQEQY--QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A LI P ILQE + + ++ + N L++ ++ S+ ++ EI Sbjct: 439 EILEHAFCALLIKFPQILQEFEIKEFILNLNFSNKLLEEFRNWYLSEVIDN-AVEAGEIA 497 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + + +D+ Q L L ++ I Sbjct: 498 AIVEKTSFFDIFLLLSEADNLFLDIAFNKDNVRLDL---LWQWLYKRYYLLNLQQEYAHI 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 K+ +T + EK + ++ ++ + Sbjct: 555 TKEYV-ITNIDDYEKVLFYKKEILKIASELQDL 586 >gi|325478782|gb|EGC81893.1| DNA primase [Anaerococcus prevotii ACS-065-V-Col13] Length = 543 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 157/575 (27%), Positives = 262/575 (45%), Gaps = 56/575 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I ++ I ++IG+YVD R + + CPFH+EKTPSF +D K + Sbjct: 4 ISDDKINQIVQSSNIVDIIGEYVDLKRSGS-----SFKGLCPFHNEKTPSFTVDDKKQLF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G ++ +S++ LA AG+ + + K K L + + Sbjct: 59 HCFGCGAGGDVVSFIMQKEGLNYPQSLEFLANKAGISIDYT--ENPKVNKRNNQLYEINK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F++ +L D++ YL +RG+ S + F LGYA DS L +++R K + EE Sbjct: 117 DIMMFYYKNLLT--DRKAQMYLKQRGLSSKIVNTFMLGYAKDSWNDLYDYIRSKNYKEED 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I + GL I + YD++R+R+IFPI + G+VI FGGR G+ KYLNSPE+ +F Sbjct: 175 IEQLGL-IKKSSKGNYYDKYRDRIIFPIINHYGKVIGFGGRA-VSGQMPKYLNSPESSVF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K NLY +K IILVEGYMDV++L G+ V+SLGTAL Sbjct: 233 KKRYNLYGLNVYKRQKRK------------EIILVEGYMDVIALNNHGLDIAVASLGTAL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ Q L+ + S I +C+D D G++A KAI + G + + LS G+DPD F Sbjct: 281 TKDQANLIKRYSDNIYICYDQDGAGIKATEKAIAI---FHDIGVNPSIISLSEGKDPDDF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR GK AFE+ I + + +++ + + TP ER + + ++ IK + R Sbjct: 338 IRENGKDAFEEKIKNANDSYNYQYEKILDEYTKATPAERFDKLNLFVDFLSSIKQELTRE 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + Y + ++ + ++ + ++ Sbjct: 398 IFINNVSKLFEIDKSTLKQAIDRYNKDTDLKIKNNGKSYN------KPIIVENKTNNFNI 451 Query: 483 REAALLLTLIN-------HPAILQEQYQ--------------ELADIRYDNNELQKLWSF 521 E +L N H + + +++ D+ + + + + Sbjct: 452 NELEVLRLFFNQRSDYEKHRDFFDKAIEDEKINNVKTFLKEKDVSKFDLDDKDYKYILDY 511 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + L EE+ +++ LK+L + Sbjct: 512 IRD---NTNPILAEELKRKIILFSRKRELKRLKNR 543 >gi|301309361|ref|ZP_07215303.1| DNA primase [Bacteroides sp. 20_3] gi|300832450|gb|EFK63078.1| DNA primase [Bacteroides sp. 20_3] Length = 705 Score = 308 bits (789), Expect = 2e-81, Method: Composition-based stats. Identities = 154/710 (21%), Positives = 273/710 (38%), Gaps = 106/710 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + Q G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKAATQAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGGDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS--------GYGRYWKKNARHRDQKGPSQR---- 465 R Y + ++ Q + E + +N + Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQPPANTIPEYPD 462 Query: 466 --------------------------------------------LMQSSLVKGKLSKKPS 481 ++ Sbjct: 463 FPGYQPYTPEEANTLPPENIPPPLPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 482 LREAALLLTLINHPA--ILQEQYQE------------------LADIRYDNNELQKLWSF 521 E ALL ++ + + +E D+ + +++ Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L L D+ D Sbjct: 583 AAEHCQNEGFMASRYFLAH-PDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLV 641 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 + + + ++I+ +I + KG+ E+ L+ + L+E+ Sbjct: 642 PREIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691 >gi|239616749|ref|YP_002940071.1| DNA primase [Kosmotoga olearia TBF 19.5.1] gi|239505580|gb|ACR79067.1| DNA primase [Kosmotoga olearia TBF 19.5.1] Length = 577 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 144/635 (22%), Positives = 269/635 (42%), Gaps = 63/635 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I + I I L+G+YV+ + + Y CPFH + PSF+ + K F+ Sbjct: 2 FDKEIIDRIKSSIDIVELVGRYVNLQKSGS-----YYRGLCPFHSDSDPSFYVSPGKQFF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD ++F + F E+V++LA IAG+ LP + +K L Sbjct: 57 HCFGCGVSGDVITFYEKIENLPFSEAVEKLAEIAGIELPKKYSVRTEYDKYTQSL---NI 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A + L L Y L ERG + F++G++P +R L++ + G E+ Sbjct: 114 LAEAYHKELLSGKHPDVLEYLLKERGFSEETLREFRIGFSPGNRTFLKKLVSNFGVKLEE 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +++AG+L+ ++ +DRF R+I PI + G+VI FGGR + KY+NSPET F Sbjct: 174 LLKAGVLVKKNSD--YFDRFSKRIIIPIHNENGKVIGFGGRIIPGETGSKYINSPETRYF 231 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG+ L+N A ++ ++++ EGY D ++L +AG++N V LGT L Sbjct: 232 VKGRVLFNLHRAKKSVK----------ELDYVVITEGYFDSMALYEAGIENNVGVLGTNL 281 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L+LL + ++ D D G A +++DL G ++ +D Sbjct: 282 TRQHLKLLKTYTNNLLFLMDSDSAGKNATLRSLDLAESE---GFSTAVAKITGTKDAGEL 338 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G A + ++P TP + +L L ++ Sbjct: 339 FKNEGPKALVDTLKNAIPGAVFRVDYLALKVDITTPQGKQKLLEFLIPTLSR-------- 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y Q + QL K I+E + R +++ + + K Sbjct: 391 -YLQRADNAGFQLTVKAISEKTNLLIKE-------IIAVAKGREKPQKILRERSTFKLKQ 442 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E LL HP + E + + + + + L F+ Sbjct: 443 IEKDLLSIYFGHPELRSEVARVVDFLE-TSEAFRYLVKFIK------------------K 483 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ F E++ ++D ++ + + + +I R+ + + + +++ Q EEI++++ Sbjct: 484 KQDFNEIIDEIDEKIGPSLMEAVEYSTDISMARKMLKD-IETHVDKKIIREQIEEIDRKL 542 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ-IESQEA 636 +V + L+ E+ + + ++ EA Sbjct: 543 RKVI---DPAMKESLMIRRMELTRLLKRTLKGGEA 574 >gi|225870338|ref|YP_002746285.1| DNA primase [Streptococcus equi subsp. equi 4047] gi|225699742|emb|CAW93504.1| DNA primase [Streptococcus equi subsp. equi 4047] Length = 610 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 277/635 (43%), Gaps = 48/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + ++ I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 17 AIDKEMISQIKHNVNIVDVIGEVVHLSRAGR-----HYLGLCPFHKEKTPSFNVIEDRQF 71 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIR 119 ++CF C GD F+ F+ESVQ +A AG+ + V + +K+ LI Sbjct: 72 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTVAPSQTSLSQKQHPHQALID 131 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L +R YL +RG+D IE F++G AP+ L + L +K + Sbjct: 132 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEYFRIGLAPNEMDYLYQALSKK-Y 190 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 +E ++ +GL + S YD FR+R++FP+ +G +IAF GR ++ + KY Sbjct: 191 TEAQLTASGLFHVSEQSNAIYDAFRHRIMFPLCDDKGNMIAFSGRIWAREDIEKQQAKYK 250 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T+LF+K LY+ A + K + + L+EG+MDV++ +AG N Sbjct: 251 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNT 300 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+S+GTALT +R L +L+ ++VL +DGDD G A K+++L+ + V + Sbjct: 301 VASMGTALTPEHVRHLKQLTQKVVLTYDGDDAGQNAIAKSLELLADFQVE-----IVKIP 355 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A +L+ S + + + + H+ I Sbjct: 356 NRMDPDEFVQQHSPEALAELLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 415 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + D L + + R + + + + + +L Sbjct: 416 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQS-LQQGQASQPKASLVTLPIN 474 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E+ LL L++H +L E D +D LQ L+ L + Sbjct: 475 KSMTALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 523 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ +L +++++ + E ++ + + L K+ R L RQ Sbjct: 524 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 579 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KQI + ++KG+ + + ++ Sbjct: 580 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 610 >gi|1943994|dbj|BAA19493.1| dnaG [Staphylococcus aureus] Length = 572 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 141/598 (23%), Positives = 245/598 (40%), Gaps = 35/598 (5%) Query: 39 YWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CPFHDEKTPSF ++ K +CF C G+ F + SF+E+V+ L V Sbjct: 1 MIGLCPFHDEKTPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNV 60 Query: 99 PLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAI 154 + + + +I + E+ +F++++L K ++ YL ERG I Sbjct: 61 AVDIEATQSNSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALI 120 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 + +G+APDS + + L++KG+ E EAGLL + + + YDRFRNR++FP+++++ Sbjct: 121 KERGIGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQ 180 Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274 G+++ + GRT G+ KYLNSPET +F K K LYN A ++K I Sbjct: 181 GRIVGYSGRT-YTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKL----------DEI 229 Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 +L+EG+MDV+ AG++NVV+++GT L++ + + KL+ I L FDGD G A K Sbjct: 230 VLLEGFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKT 289 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 L G V + L G DPD +I YG AF + ++ Sbjct: 290 GQ---HLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEI 346 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY----W 450 + L + I+ +K L+ + ++ E Sbjct: 347 AHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQLANEIQFNQAPANYYP 406 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 + D+ G + + + E A L L+ Y+ + + Sbjct: 407 EDEYGGYDEYGGYIEPEPIGMAQFDNLSRREKAERAFLKHLMRDKDTFLNYYESVDKDNF 466 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 N + ++ L + E + + Q + E L L++ Sbjct: 467 TNQHFKYVFEVLHDFYAENDQYNISDAVQYVNSNELRETLISLEQY--------NLNGEP 518 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + Y + + E + ++ + T G+ E + + + + Sbjct: 519 YENEIDDYVNVINEKGQET-----IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 571 >gi|189219556|ref|YP_001940197.1| DNA primase [Methylacidiphilum infernorum V4] gi|189186414|gb|ACD83599.1| DNA primase [Methylacidiphilum infernorum V4] Length = 595 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 151/627 (24%), Positives = 254/627 (40%), Gaps = 42/627 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++FI+ + I ++ +YV R + + + PF EKTPSF + K + C Sbjct: 7 KEFIEKVRQANDIVEVVSEYVVLKRAGSK-----FKSLSPFKKEKTPSFFVDPQKQLFKC 61 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRLIE 122 FS G F+ FI +++ LA AG+ P E+ E + + L L E Sbjct: 62 FSSGYGGTVFDFIMYYEKLDFIGALKHLARRAGLSFPSSFRYEEQNESLRQKQKLWELHE 121 Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +++ L + YL ER ID + F LGYA +S L K E Sbjct: 122 AVAEYWTKILVDEPSGEPARAYLKERNIDLCIAKEFGLGYALNSWDGLLRWASTKKGLLE 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + AGL+I ++S YDRFR RL+F I G+V+ F GR + + KYLNSPE+ + Sbjct: 182 MLEPAGLVIRTEHS-KIYDRFRGRLMFRITDEAGKVVGFSGRLIEGEQGPKYLNSPESPI 240 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KGK LY F A + + IL EG++D++ L AG V++ GTA Sbjct: 241 FTKGKILYGFHKAKRAIA----------ETGKAILCEGHIDLIRLHAAGFSTAVATQGTA 290 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE+Q LL + + + +DGD G AA +A ++ L G + L GEDPDS Sbjct: 291 LTEHQAGLLKRFCSEVFVAYDGDRAGEEAALRASEI---LLAEGLEIKIAQLPPGEDPDS 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I G+ AFEK++ E+LP + + S ++++ + + I D R Sbjct: 348 LISKKGREAFEKVLEEALPYPSFVLNKACLEYSPQQAFGKSKIAEKMAGLLIKISDPVRR 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + S + RL + + + + K+ ++ ++ + L Sbjct: 408 HTASLEVAARLGISLEIFEQKMAQLDTANKRPEELNRKEDQEKQSWGEKIPPVILES--- 464 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L+ +P + + +L L+ QK + L Sbjct: 465 ------LWFLMEYPQFIAHFKETFPAGVLSAMPAAELLIRLYDFEEAQKTVSISSFLETL 518 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + G ++ L + + Q+ L L R + L R K Sbjct: 519 SQEQKGIVVS-----FMFHPLQEKPEGYTPEEHCRILQEGLFLLWRQKCLERIK------ 567 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQI 628 + + ++ + + + ++ ++ Sbjct: 568 LQSQSGILSGQEISAKLKEIVDLARKL 594 >gi|266843|sp|P30103|PRIM_RICPR RecName: Full=DNA primase gi|434680|gb|AAB81403.1| DNA primase [Rickettsia prowazekii] gi|292572522|gb|ADE30437.1| DNA primase [Rickettsia prowazekii Rp22] Length = 593 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 298/633 (47%), Gaps = 52/633 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++F + L I IS+++ Q + R+ +N Y CPFH EKTPSF +DSK Sbjct: 1 MRVTQEFYEFLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL +R I I+ F +G+AP + + L +K Sbjct: 116 LELANKFFRTQLT----PEILNYLYKRNITETTIKEFSIGFAPRNNKFEKFFLDKKIDIT 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + I + Y+ F NR+ PIR+ +++ FGGR L E KYLNS ETI Sbjct: 172 KLGQAGL--IGKCKNGKIYNLFSNRITIPIRNIYNKIVGFGGRVL-GNELPKYLNSFETI 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K LY A++ K R ILVEGY DV++L QAG VV+SLGT Sbjct: 229 VFQKSDILYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFNEVVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTESHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E ++F T +E+A LE +LK+ N I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKNFRTAEEKANLEKNLKDYCNKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N + +K + + + Sbjct: 399 KASYYRFFKDQIWQ------------------NLVTKQKKIITPSSNSVLIASSHCYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A LI P + E + ++ ++N L++ ++ ++ ++ K EI Sbjct: 441 EMLEHAFCALLIKFPIMFAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VKENEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + LYK++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + + EK + + ++ ++ + Sbjct: 555 IS----INSNHDFEKVLLYKKEIIKIVNELQVL 583 >gi|206900923|ref|YP_002251029.1| DNA primase [Dictyoglomus thermophilum H-6-12] gi|206740026|gb|ACI19084.1| DNA primase [Dictyoglomus thermophilum H-6-12] Length = 577 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 176/627 (28%), Positives = 270/627 (43%), Gaps = 62/627 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 DF+ ++ + I ++I +YV+ + N Y CPFH EKTPSF+ + KG Y+C Sbjct: 6 EDFVDEVKQRVNIVDVISRYVNLKKTGKN-----YVGLCPFHQEKTPSFYVSPDKGLYHC 60 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD +FL +F E+++ LA AG+ +P K E+ ++ + + Sbjct: 61 FGCGAAGDVFTFLINYRNLTFREALEELAREAGLEIPK---KEEQISTEANIVLEINKAV 117 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+H L + YL +RGI S E F LGYAP + L +L +KGFS++ II Sbjct: 118 ATFYHIYLNSKYGAEGKLYLKKRGISSEIQEKFLLGYAPLNPTLLLRYLEKKGFSKDDII 177 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +A +L + D F R+IFPI + RG+VI FGGR+L GE KYLNSPE+ F K Sbjct: 178 KAKVLYFVRDEWK--DPFAGRVIFPIVNPRGKVIGFGGRSL-TGEEPKYLNSPESEFFSK 234 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 GKNLY + A ++K ILVEGYMD +SL QAG+ NVV+SLGTA T Sbjct: 235 GKNLYALYQAKESIKK----------EGEAILVEGYMDAISLHQAGITNVVASLGTAFTS 284 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 +Q +LL + +++L +D D G +A +A+ L+ I L +DPD FI Sbjct: 285 HQAKLLKSYTNKVILSYDQDSAGYQAGKRALSLLEVEGIE--VYWLSLPKDVKDPDEFIH 342 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--- 421 Y K F K + ES P +D L + N + E+ L + I K+ ++ Sbjct: 343 KYSKEEFLKFVKESKPSLDFLIENTLSL-PMNFKERLEEIIEILTSSILRSKNILVQQEK 401 Query: 422 -YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y I RL + E + ++ + + ++ S + L Sbjct: 402 IKQYLPLISKRLGVPEEGIQKEIQK-RIFSDRSYKSNVKIEITRYFGVSKTEEVLLGLIL 460 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + + + + + Q++ Sbjct: 461 LGINNSQIKNM--------------SPEDFSFPLYQEVLKK------------WRVWEGS 494 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E F L + R + D + S N D+ + + ++R EE+ K Sbjct: 495 LEE--FLNLWDEDKRVLIDRAISSGEEFINQEDIIPFLWDHFQKLRIKKEINRLIEELSK 552 Query: 601 QIAQVTAKGEAEKTAIL--ISILHEVH 625 E E + + L EV Sbjct: 553 L---DDPIKEKELMEEIYFLRSLLEVK 576 >gi|33861496|ref|NP_893057.1| DNA primase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634073|emb|CAE19398.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 678 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 151/628 (24%), Positives = 278/628 (44%), Gaps = 53/628 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I ++I +++ ++ ++ CPFHD+ PS + +K F Sbjct: 4 SIHPRTIQEVKDKADIVDVISEHIVLKKKGK-----EFVGICPFHDDSKPSMTVSPAKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI----QTDL 117 YYCFSC G+ + FL +F + V LA + + VD ++ K + +L Sbjct: 59 YYCFSCGAGGNSIKFLMEFTRNNFTDVVLSLAKKNDINVINVDGPQQEIYKKQLSRREEL 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ- 175 +++ V ++F L N+ K H+Y +R ++ I F+LGYAP+S L +L + Sbjct: 119 YKILRVTKEWFKSQLNNSLGKEAHHYLTSQRNLNIKNINDFELGYAPNSWNDLFNYLSKV 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + F + I+ AGL++ DN+ YDRFRNRLI PI +G+V+AFGGR+L G+ KYLN Sbjct: 179 EKFPLKLILSAGLVVSKDNTDKVYDRFRNRLIVPIFDMQGRVVAFGGRSL-DGQEPKYLN 237 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET +F KGK L+ F A + ++K ++VEGY DV+SL G+ N V Sbjct: 238 SPETEVFEKGKMLFAFDKASSNIRK----------RDKAVVVEGYFDVISLHSKGITNSV 287 Query: 296 SSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVL 352 +SLGTAL +YQ+ L + + I++ FD D+ G A + I+ V + + Sbjct: 288 ASLGTALNKYQISQLCRCTDSKNIIINFDSDNAGRLATKRVINEVESLSLHDQINLKILE 347 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + +DPD +++ + LI + +D + +N+ + D + L + Sbjct: 348 IKSSKDPDEYLKENTPEDYFNLIDNASFWIDWEIDQIFDNKDLSKSDIFQNVISSLVKLL 407 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + R +Y Q + +RL + + R K R + ++ + S Sbjct: 408 SKFPQSATRTHYLQKVSERLSMGQARLAIKFEEDLRKQVKGFRWHGRSKKFEQPSEVSQR 467 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR---YDNNELQKLWSFL------- 522 + E+ ++ ++ P +EL ++ ++ +W + Sbjct: 468 EKN--------ESEIIYYYLHCPEHRLFIREELLKREINIFNTEYIRLVWESISTIEVNN 519 Query: 523 --FSDFVEQKYFLPEEIHQRLCERGFGELLK--------QLDRQVRDAGLWSATTEANIV 572 + + K ++++ LL ++ ++ + Sbjct: 520 LSANYLDDLKDPNNKQLNNEFTSINLISLLPDHLALNDLEVSNKINTFINPDELFLTTLK 579 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + L+L +R++ L R + IE Sbjct: 580 NSKHNLLGTLSLLERYKSLKRCRHLIES 607 >gi|307718767|ref|YP_003874299.1| DNA primase [Spirochaeta thermophila DSM 6192] gi|306532492|gb|ADN02026.1| DNA primase [Spirochaeta thermophila DSM 6192] Length = 596 Score = 308 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 169/638 (26%), Positives = 273/638 (42%), Gaps = 55/638 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ + + +L+G+Y R Y CPFH + PSF + KG Sbjct: 3 RIPQEIIEEIQRRVDVLSLVGEYTSLRRTGN-----SYMGLCPFHADSDPSFSVDPEKGL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL 120 +YCF CH G+ F+ + C+F E+V+RLA AGV + V P+ E K + L L Sbjct: 58 FYCFGCHKGGNIFQFVMEVEHCTFYEAVERLAERAGVSITAKVTPEEEASFKKERALQDL 117 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHA-IEMFKLGYAPDSRYSLREHLRQKGF 178 F H L + + Y RGID + F LGYAP L LR+KG+ Sbjct: 118 NLRLVGLFEHFLHSREEGRAAREYCVSRGIDLSWARDTFHLGYAPHDPCWLYRFLRRKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SEE + +GL Y F +RLIFPI G+V+ FGGR L + + KYLNSPE Sbjct: 178 SEELLHVSGLFSAKREG---YAIFSHRLIFPIYDVSGKVVGFGGRALREDQQPKYLNSPE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K + LY AL L+K+ + +ILVEGY+DVL L Q G+ NVV+ L Sbjct: 235 TSLFKKKRLLYGLHRALPELKKTKK----------VILVEGYIDVLLLHQHGIMNVVAPL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + Q L + + I+ FDGD G RAA +A + V+ RGED Sbjct: 285 GTAFSREQAIQLKRYADSIIFFFDGDTAGERAAQRAGMICE---AVDFSCRMVVPPRGED 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD-ERAELEIHLKNCINHIKD 417 P SF++ G ++++E + L +R + + + + E + + I ++ Sbjct: 342 PASFLQKKGVEEVRQILMEEKDVFQCLLERRVKEGILTSSETDMREFVTSMFSYIRSVQS 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + + + + + + +A G ++R Sbjct: 402 TMRRERLLEEMAESMGVSLGAIKEDFDRFQSSEGNSAPLSTTMGRNRRRTT--------- 452 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L L HP + + ++ ++L+ L P+ + Sbjct: 453 ------EVFLFQALCAHPEYYTVVRPLIQEDALEDASAKELFFALEECLRAGTMDRPDAV 506 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + EL + ++S E + VR+ + R + L R++ E Sbjct: 507 LEHVTDEKARELALE--------AVFSGEFEVPLEAVREAVFRW-----REQWLHRRRRE 553 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 IE++IA +G L+ + ++ ++ E Sbjct: 554 IERKIALYEREGGD--IQELLLEKMYLDKELEKLRGYE 589 >gi|51474027|ref|YP_067784.1| DNA primase [Rickettsia typhi str. Wilmington] gi|81389910|sp|Q68VQ4|PRIM_RICTY RecName: Full=DNA primase gi|51460339|gb|AAU04302.1| DNA primase [Rickettsia typhi str. Wilmington] Length = 593 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 175/633 (27%), Positives = 299/633 (47%), Gaps = 52/633 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++F + L I IS+++ Q + R+ +N Y CPFH EKTPSF +DSK Sbjct: 1 MRVTQEFYELLRNRINISDVVRQKLALTRKSSN-----YVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKASGDVIKFTSNISGLSYNESAIKLANDYGIEIPKLTVKQKEFYEESDNILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL++R I I+ F +G++P + + L +K Sbjct: 116 LELANKFFRTQLT----PEILNYLNQRNITETTIKEFSIGFSPRNNKFAKFFLDKKIDIT 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + Y+ F NR+ PIR+ +++ FG R L G KYLNS ETI Sbjct: 172 TLGQAGLIGKRKNG--EIYNLFSNRITIPIRNIYNKIVGFGARVLGNG-LPKYLNSYETI 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K LY A++ K R ILVEGY DV++L QAG VV+SLGT Sbjct: 229 VFQKNDTLYGEHKAISSSYKKNRS----------ILVEGYFDVIALHQAGFSEVVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRACDEIILCLDGDNAGIKASIRTINLALPLVNSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E ++F T +E+A LE +LK+ N I D L Sbjct: 339 DVVNKNGADFFAKLIDKRISLSEMIWYIEYSGKNFKTAEEKANLEKNLKDYCNKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N + +K +Q S + + Sbjct: 399 KASYYRFFKDQIWQ------------------NLVIKQKKIITQNFNSSLIASSHCYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A LI P +L E + ++ ++N L++ ++ ++ ++ K EI Sbjct: 441 EMLEHAFCALLIKFPIMLAEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNK-VEESEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + LYK++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKADNLFLDISFNKNNIRLDLLWQW-----LYKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + EK + + ++ ++ + Sbjct: 555 IS----INGNHDFEKVLLYKKEILKIVNELQVL 583 >gi|78776224|ref|YP_392539.1| DNA primase [Sulfurimonas denitrificans DSM 1251] gi|78496764|gb|ABB43304.1| DNA primase [Sulfurimonas denitrificans DSM 1251] Length = 550 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 141/600 (23%), Positives = 255/600 (42%), Gaps = 66/600 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L + I +++G +V+ + N Y A CPFHDEK+ SF + SK Y Sbjct: 2 ITQDSIEALKARLDIVDVVGSHVELKKTGAN-----YKAPCPFHDEKSASFVVSPSKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ ++ E++++LA+ L D K K +++ Sbjct: 57 HCFGCGAGGDSIKFVMEFEKLNYPEALEKLASTYNFSLSYSDNKSTKSSSG------IMQ 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++H+ ++ + Y+ ERGI +IE F +GYAPDS + ++ + S + Sbjct: 111 KIDSWYHYLF--TKNPQAISYIKERGIYESSIEKFGIGYAPDS-NATISFIKSQLLSMNE 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I + I G++ + +Y RF R+ FPI S+ G ++ FGGRT+ G KY+NSPET F Sbjct: 168 AI--EMGIVGNDGSRAYARFIERITFPIHSANGTIVGFGGRTI-TGHQAKYVNSPETPYF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A + K + I++ EGY+DV+ L QAG N V++LGTAL Sbjct: 225 NKSRLLYAYHHAKQTIHK----------TKEIVITEGYLDVIMLHQAGFTNAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L +L K P++++ +DGD G AA KA + G V+ S G DP Sbjct: 275 TSEHLPILRKGEPKVIMAYDGDKAGRAAALKASKI---LSAGGFNGGVVIFSDGLDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + P ++ + + P R + + L+ Sbjct: 332 VKNGAVEELSNMFRAPQPFIEFVLDEILSLYNLRDPKARELCMQDAIGYLKTL-SAMLQE 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + RL K ++ + +L ++ + Sbjct: 391 EYKSYLASRLGLSPSYI--------------------KITNKSNINQNLPFIDKNRHRDM 430 Query: 483 REAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E L+ T++ HP + + L +++ ++EL S + + ++ Sbjct: 431 WELTLIKTVLEHPEFIDQILDVLDPSLLKFHSSEL----SLALRGEFSHPQLMAIAVDEQ 486 Query: 541 LCERGFGELLKQ------LDRQVRDAGLWSATTEANIVDV---RQGYQQALALYKRFRLL 591 + + L+ + R+ + ++ + + ++ + L KR L+ Sbjct: 487 IKALNSEDALRAELVSFLMKHYEREYKKVNVLSDITFEEKAFYIRKFKGKIELLKRGELV 546 >gi|195977962|ref|YP_002123206.1| DNA primase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974667|gb|ACG62193.1| DNA primase DnaG [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 603 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 276/635 (43%), Gaps = 49/635 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + ++ I ++IG+ V R Y CPFH EKTPSF+ + + F Sbjct: 11 AIDKEMISQIKHNVNIVDVIGEVVHLSRTGR-----HYLGLCPFHKEKTPSFNVIEDRQF 65 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIR 119 ++CF C GD F+ F+ESVQ +A AG+ + + + +K+ LI Sbjct: 66 FHCFGCGKSGDVFKFIEEYRQVPFLESVQIVADKAGMAVTIAPSQASLGQKQHPHQALID 125 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L E A F+H L +R YL +RG+D IE F++G AP+ L + L +K + Sbjct: 126 LHEDAAKFYHAVLMTTKIGQRAKEYLYQRGLDDQLIEHFRIGLAPNEMDYLYQALSKK-Y 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE----SVKYL 234 +E ++ +GL + S YD FR+R++FP+ +G +IAF GR ++ + KY Sbjct: 185 TEAQLTASGLFHVSEQSNAVYDAFRHRIMFPLCDDKGNMIAFSGRIWAREDIEKQQAKYK 244 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS T+LF+K LY+ A + K + + L+EG+MDV++ +AG N Sbjct: 245 NSRATVLFNKSYELYHLDKAKPIIAK----------THEVFLMEGFMDVIAAYRAGYGNA 294 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++S+GTALT +R L +L+ R++L +DGDD G A K+++L+ + V + Sbjct: 295 IASMGTALTPEHVRHLKQLTQRVILTYDGDDAGQNAIAKSLELLTDFQVE-----IVKIP 349 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 DPD F++ + A KL+ S + + + + H+ I Sbjct: 350 NRMDPDEFVQQHSPEALAKLLQHSRISSVEFLIDHLKPENMDNLQSQIAYVEHISQIIAQ 409 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + D L + + R + + L+ +L Sbjct: 410 APSITAQNSYINKVADLLPDFDYFQVEQSVNALRLQDRQSLQGQTSQSKASLV--TLPIN 467 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E+ LL L++H +L E D +D LQ L+ L + Sbjct: 468 KSMTALAKTESHLLHRLLHHDYLLNEFRHR-PDFYFDTPALQTLYEQLKA---------- 516 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ +L +++++ + E ++ + + L K+ R L RQ Sbjct: 517 ---TGQITSYDLSQLSEEVNQAYYRVLEENLPDEIASGEIEDILSRQMTLLKQ-RELHRQ 572 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KQI + ++KG+ + + ++ Sbjct: 573 ----GKQIRESSSKGDHQMALEALERFIAEKRKME 603 >gi|255327240|ref|ZP_05368314.1| DNA primase [Rothia mucilaginosa ATCC 25296] gi|255295520|gb|EET74863.1| DNA primase [Rothia mucilaginosa ATCC 25296] Length = 708 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 132/458 (28%), Positives = 206/458 (44%), Gaps = 28/458 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I ++ I +I YV G + CPFHDE+TPSF+ G Y Sbjct: 5 IRKEDIDEVRARTDIREIIEGYVSLKSAG----IGTFKGLCPFHDERTPSFNVRPQVGSY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD SF+ A+ SF+E+V+RLAA G L P + ++ L+ Sbjct: 61 HCFGCGESGDVYSFVMAMEHTSFVETVERLAARIGYTLHYEGGKPGDRYEAGMRRRLLDA 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A +FF +L +A + +L RG D A F +GYAP L +HLR +GF++ Sbjct: 121 HKMAAEFFERNLYSADAQEAQRFLGARGFDPAATRKFGVGYAPRGWDHLLKHLRSQGFTD 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E++ G+ +G+ YDRFR R+I+PIR+ G+ I FG R L + KYLN+PET Sbjct: 181 EELKATGMFSEGNR--GLYDRFRGRIIWPIRTIAGETIGFGARRLFDDDQGPKYLNTPET 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 L+ K + LY A + K + +++VEGY DV++ AG+ V++ G Sbjct: 239 QLYKKSQVLYGIDLAKRDMTK----------TKQVVIVEGYTDVMAAHLAGITTAVATCG 288 Query: 300 TALTEYQLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 TA ++++ ++ I+ FDGD G +AA A + + + Sbjct: 289 TAFGPGHIKMVRRMITDDGSGGEIIFTFDGDAAGQKAAMAAFQEDQRFVA---QTFVAVA 345 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G A LI PL + T + R + I Sbjct: 346 ENGMDPCDLRLHKGDAAVRSLIASRRPLFEFAIDSTLAKYDLATLEGRVLAMRAIAPIIA 405 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 IKD+ LR Y + + +L + + + K Sbjct: 406 GIKDRDLRPAYMRKVSGQLGLELDEIQRAVAYAQNHPK 443 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 7/192 (3%) Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ-EQY 502 + +N + + + + + E A L + HP ++ EQ+ Sbjct: 521 QNAAAHPPRNIQPASPQPEATAPAVEEFLTPDPRDPIARLEKAALEIALQHPELISVEQW 580 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 + LA +++ +++ + + E + + + Sbjct: 581 RNLATVQFRYRTHREVAAGIIHAATVMAPTPGIEWINCVRSGAVEGVHPAIAELAV---- 636 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 S ++ + AL + ++RQK ++ ++ Q++A + E+ + L Sbjct: 637 -SPLPVSSAERLPGFVTGALNALF-EQQIARQKSDLMMRLEQLSANPDDEEFEAVQRQLL 694 Query: 623 EVHIQIHQIESQ 634 E+ ++ Q+ +Q Sbjct: 695 ELEMRRRQLSAQ 706 >gi|320527309|ref|ZP_08028494.1| DNA primase [Solobacterium moorei F0204] gi|320132333|gb|EFW24878.1| DNA primase [Solobacterium moorei F0204] Length = 587 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 134/637 (21%), Positives = 262/637 (41%), Gaps = 58/637 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I ++IG Y+ R+ Y A CPFHD+ PS + K Sbjct: 3 KISDHDINAIREKADIVDVIGHYIQVHRKGN-----SYVAICPFHDDHDPSMSISPEKKI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--VPLPVVDPKIEKKEKIQTDLIR 119 Y CF C G+ +F+ +F E+V R+A++ + + V + K+ + L Sbjct: 58 YKCFVCGSGGNVYTFVQNYENITFPEAVGRVASLINYPLQVDVDIRQRSSKDPHKEALYN 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++ A + + L YL++RG+ + I+ F++GY P+ +L L KGFS Sbjct: 118 VMNAAIQYMMYQLDTVEALNEKKYLEKRGLTADLIQEFQIGYNPNQ-TALYHFLHAKGFS 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + A L+ ++ +D F R+ FPI G I F R L KY+N+ ET Sbjct: 177 DADMNGANLIRINES--GIHDTFAGRITFPIHDQYGNPIGFSARILDPNNPSKYINTNET 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KG +YN+ A +K I + EG DV++ +AG+ N V +LG Sbjct: 235 DIFTKGDIVYNYHRAKAVARK----------EGKIYVCEGVTDVIAFAKAGIFNAVCTLG 284 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ TE Q+ LL ++ +IV C+DGD G A +A+ + G V+ + G+DP Sbjct: 285 TSCTERQIHLLKNIAAKIVFCYDGDRAGQAATLRAVHMAR---KAGCDVSVIRNLTGKDP 341 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +R G + ++ + + ++ + + + + N ++ EL ++ I + D+ Sbjct: 342 DELVREQGTEGLQSVLKDEVTWMEFVIEYQVAQTNLNNYSDKKELVRKVQADIATLADEV 401 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y++Q + + + ++ + Q+ K + Sbjct: 402 DRRYFTQQLAEM-------------------THMPVDYIPQTSNRSINQTIQKKLTIPDG 442 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E +L+ ++ EL ++ + L + + P + Sbjct: 443 SLDAEDLILMMMLKSSTHAHTFEVELG--YLNDKTHKLLAMLIIDSLHTFQDADPSHLID 500 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R ++ +LL +L + A +D + + + L ++++ Sbjct: 501 RTDKQEVKDLLTRL-----------VSMPAYDIDYDEAVLKGAIRKVKITTLQKERDAYY 549 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635 +Q++Q ++K L+ + ++ + ++ +E Sbjct: 550 EQLSQAGLNDMSQKV--LMEKYQKCIQELRRYLDEEE 584 >gi|239906705|ref|YP_002953446.1| DNA primase [Desulfovibrio magneticus RS-1] gi|239796571|dbj|BAH75560.1| DNA primase [Desulfovibrio magneticus RS-1] Length = 576 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 163/614 (26%), Positives = 264/614 (42%), Gaps = 41/614 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + I+ ++G+YV + CPFH E SF+ + KG Sbjct: 1 MKNDSGAVAAVKARANIAEIVGRYVTLRPVGS-----RLVGPCPFHQETKGSFNVHPDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118 F++CF C GD + F + G F E ++RLAA GV L DP+ K++ + + Sbjct: 56 FFHCFGCQASGDVIDFFCRINGLEFREGLERLAAEVGVDLGRARSDPRAAAKKRERDACL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A +F H L + YL+ RG+ + IE F LG +P+ L+ LR +GF Sbjct: 116 AMHELADRYFRHLLGRDEGRVAREYLERRGVSAEMIERFSLGVSPEGWQGLQTVLRGRGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ I AGLL G N ++DRFR RL+FPIR G+VIAFGGR + +G+ KYLNS E Sbjct: 176 DDDSAIIAGLLTQGKNG-RTWDRFRGRLMFPIRDGGGRVIAFGGRVMGEGDP-KYLNSAE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ KG++LY + A + K+ R +L EGY+DV++L Q G L Sbjct: 234 TPIYTKGQHLYGLYEARPVMAKTRRA----------LLSEGYLDVITLHQFGYGEACGVL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA+T Q + L +PR+ L FDGD PG +AA +A ++L G V L GED Sbjct: 284 GTAMTHEQAKRLSGFAPRVDLVFDGDAPGRKAALRAAQMLLTL---GGACRVVPLPDGED 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS + G+ FE + + ++ + E+ + E+ + + D+ Sbjct: 341 VDSLLHAQGRDGFEACLERAEDGLNFCLRMVRESYAPR------EIVAWAGEFLGGLADE 394 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR + + L + S + R + P Q + Sbjct: 395 GLRALFIPRVASGLGLAEAELRRLLSRPAKRPAPGPRPGETAAPRQPAWE---------- 444 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV-EQKYFLPEEI 537 + R+A +L ++ P A N + + ++ L E + L E Sbjct: 445 -LAPRDAQILSFVVRRPDYAAHLAGAGAGELLGNADARLFFARLAGLVSDEAEARLTEPE 503 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + D L EA D R+ A+ L ++ Sbjct: 504 TAFWAKAQMEPPVSDEDAAAFFEELCVFLHEARESDRRRSVMDAIRLAQQRGDSEEALR- 562 Query: 598 IEKQIAQVTAKGEA 611 + ++ ++ +G+ Sbjct: 563 LLGELQALSGRGDE 576 >gi|125623387|ref|YP_001031870.1| DNA primase [Lactococcus lactis subsp. cremoris MG1363] gi|124492195|emb|CAL97124.1| DNA primase [Lactococcus lactis subsp. cremoris MG1363] gi|300070135|gb|ADJ59535.1| DNA primase [Lactococcus lactis subsp. cremoris NZ9000] Length = 637 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 155/669 (23%), Positives = 265/669 (39%), Gaps = 84/669 (12%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGFY+CF Sbjct: 7 EVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGFYHCF 61 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD + FL FI++V+ LA AGV L + E+K L + A Sbjct: 62 GCGRSGDAIEFLKEYNQVGFIDAVKELANFAGVTLDI-SNDREEKNNPNAPLYEINNQAA 120 Query: 126 DFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 ++ L + +R YL ERGI I+ F +G AP+ + ++L K ++ + Sbjct: 121 RLYNILLMSTELGERARDYLAERGITDDVIKRFNIGLAPEENDFIFKNLSNK---FDEEV 177 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILF 242 A + ++ +D F NR++FPI + GQ I F GR + + KY+N+ T +F Sbjct: 178 MANSGLFHFSNNRVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSATTIF 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K L+N A + K + L+EG+MDV++ +AG+ NVV+S+GTAL Sbjct: 238 DKSYELWNLDKAKPTISK----------RREVYLMEGFMDVIAAHKAGINNVVASMGTAL 287 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE +R L +++ + VL +DGD G A YKA++LV + V V + G DPD + Sbjct: 288 TEKHVRRLKQIAKKFVLVYDGDSAGQNAIYKALNLV-----GESDVQIVKVPEGLDPDEY 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + YG T L+ + + + + I ++ + Sbjct: 343 SKTYGLTGLSALMETGRIQPIEFLIDFLRPENLANLQVQLDFIEQIAPMIAKLQSITAQD 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYW-------------------------------- 450 Y + + + L + + R Sbjct: 403 AYIRKLVEILPDFEYNQVEQAVNLRRENMNITDHSVSDYGASNLVENFADERDYSNLDSA 462 Query: 451 -----------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + + ++ + E LL +I H ++L+ Sbjct: 463 IPIDFEEIFYENNIQPQVADRRNEPAQVFQPTIQVPKLSRSERAEEMLLHRMIYHSSVLK 522 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + Q+ + R+ + Q ++ L + + + + L E + L Q+ Sbjct: 523 KFSQD-ENFRFVHKRYQDIFEKLLLEAMVYEQIDESHLASELSEDQ-----RSLFYQIIS 576 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 L + I D+ + + + EE+++Q+A G E+ L Sbjct: 577 LDLPETASSQEINDLVSIFSNEME--------QIKFEELQQQLATAEKAGNKERMLELTL 628 Query: 620 ILHEVHIQI 628 + ++ Sbjct: 629 QIINQKKKL 637 >gi|94986961|ref|YP_594894.1| DNA primase [Lawsonia intracellularis PHE/MN1-00] gi|94731210|emb|CAJ54572.1| DNA primase (bacterial type) [Lawsonia intracellularis PHE/MN1-00] Length = 576 Score = 307 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 161/630 (25%), Positives = 273/630 (43%), Gaps = 65/630 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+++ + I +++ QYV R + + A CPFH E PSF ++ GF+YCF C Sbjct: 9 IQEIKSRLNIVDIVRQYVKLHRNGS-----RWVAPCPFHQETKPSFSVSEEDGFFYCFGC 63 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIRLIEVA 124 GD +F S + G SF E++++LA AGV L + +K + L+++ E Sbjct: 64 QASGDIFTFYSQINGLSFRETLEQLAEEAGVILTRFSTFGNESQKVHTNRRQLLKIYEFT 123 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 T F ++L + K Y+ +RGI + F+LG++ +L L++ GF E+ + Sbjct: 124 TTHFVNNLHSEIGKECREYMKKRGISDEISQYFRLGWSSSDWDTLVRALKRAGFHEQFGV 183 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 EA L + ++ YDRFR RL+FPI S G +IAFGGR + ++ KY+NS +++L+ K Sbjct: 184 EAAL-VGIASNGKFYDRFRGRLMFPISSLSGNIIAFGGRIIGDEDTAKYINSSDSLLYKK 242 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 G LY A + +S I++ EGYMDV++L Q G N V LGTALT Sbjct: 243 GDQLYGLQQARQSI----------SSGKSILITEGYMDVITLHQYGYTNAVGVLGTALTS 292 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 Q++ + + I + FDGD PG +AA +A ++ L G VL GED DS I+ Sbjct: 293 EQVKRISGFTSNIEILFDGDAPGRKAALRACEM---FLTKGLNCKVVLFPEGEDIDSVIK 349 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 YGK FEKL ++ + + + D ++ Sbjct: 350 NYGKEFFEKLKNDASEGLQFCIQSLKTRAPRDVIDWVKNFLKQVE--------------- 394 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 I R + + R + + +H +K +Q S + + R+ Sbjct: 395 LPEIVSRFTSILSTGLGLAESELREYVADIKHSIKKKVTQSAAIS-----HSLVQTTPRD 449 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 +L+ L+ +P +L + ++ A + + ++LW + + I Q L + Sbjct: 450 KQILMFLVRYPHMLDKLKEQGAHLVLNTTWAKELWGKVEEYSEDN-------IMQYLNSQ 502 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 K Q R + E + Q +AL + + +S + Sbjct: 503 E-----KTFWVQCRTGDVPPLDNEEGEFEAIQTMLEALHMTVQSASVSAALK-------- 549 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634 G+ + L + + + + Sbjct: 550 ---LGKTSSFEADLKYLRALQETLERTHGE 576 >gi|256545302|ref|ZP_05472666.1| DNA primase [Anaerococcus vaginalis ATCC 51170] gi|256398983|gb|EEU12596.1| DNA primase [Anaerococcus vaginalis ATCC 51170] Length = 557 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 152/581 (26%), Positives = 262/581 (45%), Gaps = 37/581 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++L + I +IG YVD + Y CPFH+EKTPSF +D K + Sbjct: 4 ISDEKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDRKQLF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G S+I+S++ LA AG+ L D K K+ KI + + Sbjct: 59 HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLAKKAGIKLD--DTKSSKENKILNRYYDINK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F+ +L + ++ YL RG S+ + F LG+A +S L +++ K + + Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLNYVKNKDYLLDD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I GL I + YD++RNRLIFPI + G+VI FGGR++ KYLNSPE+ +F Sbjct: 175 IENLGL-IKKSQNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESQVF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K NLY K IILVEGYMDV+ L G+ V+SLGT+L Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + + +C+D D+ G++A +AI++ L G + N + L +G DPD F Sbjct: 281 TNDQAKLLKRYAKNVYICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ YG+ AF K + E+ + + + + + + + +E+ E ++ IK R Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDLYADSKDNEKFEKLNLFIEFLSSIKSDLTRE 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + Y +KK +++++ + + + + Sbjct: 398 IFINNVSKLFDIDKSTLKESVLKYNDNYKKTYKNQNKDSFYNKNDFKNFNANQNTIIERK 457 Query: 483 R------EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYF 532 + E L +N E + + + +L ++ ++ F E Sbjct: 458 KYSVSTNELEALRLYLNQKDEYDENKEFFDQV-IVDEKLLEIKEYIDKNGFDKISENFSN 516 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 + I + ++ + K+L ++ + D Sbjct: 517 DYQFIIDYIKDKSNKIVGKELIEKINLENRKKLLKKLRNRD 557 >gi|115375596|ref|ZP_01462853.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1] gi|310823183|ref|YP_003955541.1| DNA primase domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115367372|gb|EAU66350.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1] gi|309396255|gb|ADO73714.1| DNA primase domain protein [Stigmatella aurantiaca DW4/3-1] Length = 605 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 161/627 (25%), Positives = 255/627 (40%), Gaps = 50/627 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I++++ + + LI +YV+ + +Y CPFH EKTPSF+ K Sbjct: 1 MNIPEHKIEEIIDRVDLVGLISRYVELKKSGR-----EYKGRCPFHQEKTPSFYVIPEKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+C C GD +SF+ LG FIE+V+ LA GV + + + L + Sbjct: 56 FYFCHGCRASGDAVSFVQRYLGKPFIEAVKDLAREVGVDIEAAQDPTAR---ERQQLKEV 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++A + F L + YL RG+ + F LG+A S L + L + G E Sbjct: 113 TDLAAEHFRALLWQDEGRAARAYLATRGVSEETAQAFGLGWAAQSWSLLADKLTRAGMVE 172 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++AGL N+ YD FR+RL+ PIR+ G+ IAFGGR + E KYLNS E+ Sbjct: 173 W-GVKAGLAQRRQNADGYYDFFRSRLMVPIRAPEGRPIAFGGRLVGAEEGPKYLNSKESR 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L++K + LY A + +++ ILVEGY D + L Q GV++ V+ T Sbjct: 232 LYNKSETLYGMDQARDEIRR----------RKSAILVEGYFDCIGLHQVGVRHAVALCST 281 Query: 301 ALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 ALT L+LL + +VL DGD GL A + L L G LL +G+DP Sbjct: 282 ALTPGHLQLLHRGEARELVLLLDGDQAGLNAVER---LAGPLLAAGASTRVALLPQGDDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+F R G E+L+ + PL L+ + +E+ L+ I Sbjct: 339 DTFARREGMEGVERLLQGAQPLTAHLFSSVLPEGGRASFEEKMAAIERLRPMAAQIPMGL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R + A+ F + + G R P ++ + Sbjct: 399 VRSAFLNAV----GAHFSLPVGDLEGALRPKAPPKPAPSSAQPPSPSAPAAPRPPPVRPP 454 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +L E + + P ++ A + L+ + + + Sbjct: 455 DAL-ETFYVAATLREPRLVARDTFR-ACDELSHTGLR----MVLAHATSGQGAEDALFEA 508 Query: 540 -RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +R L+QL A + + L L + + Q I Sbjct: 509 PEVVKRALEGALRQL-----------PEAGAPLEQAFLAVCRKLMLRR----IDEQLGYI 553 Query: 599 EKQIAQVTAKGE-AEKTAILISILHEV 624 EK Q + E+T L++ E+ Sbjct: 554 EKATKQAPGAYDLTEETRRLLAERIEL 580 >gi|218962086|ref|YP_001741861.1| DNA primase [Candidatus Cloacamonas acidaminovorans] gi|167730743|emb|CAO81655.1| DNA primase [Candidatus Cloacamonas acidaminovorans] Length = 580 Score = 306 bits (783), Expect = 8e-81, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 280/631 (44%), Gaps = 68/631 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I + I ++I Y+ R +N + CPFH++ PS + + SK Sbjct: 7 KMDQNLIDQIRRANDIVDVIQGYLPLKRVGSN-----FRGLCPFHNDSRPSLYVSQSKQI 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF+C G+ + F++ +FIE+V++LA AG+ +P + K + + L+ + Sbjct: 62 FKCFACGKAGNVIGFVADFEKLTFIEAVKKLAQRAGIQVPEYE-KTKVVNTKREQLLSVY 120 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A +FF SL A + + YL +R + +LGYA +S +L HL ++G+S Sbjct: 121 KSAAEFFTSSLF-AFGQNVLDYLKKRSFSPETAKELQLGYALNSEKALLNHLLKEGYSVS 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + ++GL G+ D F++RL+FPI +S G+VIAFGGR L E V KY+NSP T Sbjct: 180 LLKDSGL--FGNYGGGLTDLFKDRLMFPIHNSLGEVIAFGGRILEPKEGVGKYINSPGTE 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ KGK LY + + K + I+ EGY D L L + G N V+SLGT Sbjct: 238 LYTKGKELYGLYKTKYNISK----------AGTAIICEGYFDFLRLYENGFTNSVASLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+ LL + RI++ +DGD G++AA +A L L G V L EDPD Sbjct: 288 ALTEDQINLLARFCNRIIILYDGDSAGIKAAVRAGLLCLS---RGMEVLIANLPAEEDPD 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S I GK A ++++ +S+PL++ L AE + + + +KD+ Sbjct: 345 SLILKQGKIAMQEVVDKSIPLINFL------ATDPRPEQPTAERIELILDALRILKDRIK 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Q + D ++ + + + Sbjct: 399 QELLLQEVSDAFGVTVGALNSKLRRSSASVSAESSEQIVP-----------------QYE 441 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S E +L + + +L ++N +++++FL + ++ + + P + Sbjct: 442 SFEERNVLALALKDYESYKLLANDLDSSYFNNKRYRQVYNFLITQNLKSEPWEPAALLDN 501 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E L +L D++Q + R R + R EE+++ Sbjct: 502 IENNEIKESLAELL----------------FEDLQQMCFEDCLSGLRIRKVQRDLEEMDR 545 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I++ K L+ ++ ++ Q+ Sbjct: 546 AISKDP------KNMELLKEKEKLALKYRQM 570 >gi|167755651|ref|ZP_02427778.1| hypothetical protein CLORAM_01166 [Clostridium ramosum DSM 1402] gi|237734399|ref|ZP_04564880.1| DNA primase [Mollicutes bacterium D7] gi|167704590|gb|EDS19169.1| hypothetical protein CLORAM_01166 [Clostridium ramosum DSM 1402] gi|229382629|gb|EEO32720.1| DNA primase [Coprobacillus sp. D7] Length = 584 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 146/629 (23%), Positives = 280/629 (44%), Gaps = 51/629 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I ++ + I ++IG Y+ +++ N Y A CPFHD+ PS + + Sbjct: 3 RLSSEKINEIRQSVDIVDVIGTYLPLEKKGRN-----YVAICPFHDDSHPSMSISPERQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIR 119 + CF CH G+ +FL L +IE+V+ +A I V + + + K ++ L R Sbjct: 58 FMCFVCHHGGNVFTFLKDYLKIPYIEAVKMVANIGNVDISKYNLESRVKPVDQKLEPLYR 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + A ++H L + YL+ R I IE F++GYAP++ + L + + F+ Sbjct: 118 MHDEANKIYNHYLNTKLAIQAKEYLNNRKITDEIIETFEIGYAPNN-HVLLKAFEKMNFN 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 + + E+GL+I+ N YDRF +R++FP+ + G+V+ F GR + ++ KY+NSPE Sbjct: 177 KVSMFESGLIIEASNG---YDRFTDRIMFPLHDASGRVVGFSGRIYKQSQNESKYMNSPE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F KG LYN+ + + +II+ EG+MDV++L +AG++N V+ + Sbjct: 234 SSIFIKGDTLYNYHRVGEEAR----------QAGYIIITEGFMDVIALYKAGIKNAVAIM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT L LL +LS + LC DGD G A K+ID+ L G V V L D Sbjct: 284 GTALTHGHLNLLKRLSKTVYLCLDGDQAGRNATIKSIDI---LLSAGFIVKVVDLPDNLD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + G +I L +D E + + ++R + I+ + D Sbjct: 341 PDEILDKRGIEELNAVIKRPLSSLDFKMNYYYEMTNMDNYEDRKSYLETIAREISRLDDI 400 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +Y Q + ++ + I + N + ++ +L Sbjct: 401 IDQDHYIQQL-EKKSGFSRNIIDQLI--------NQNTAVRIETAEPPKIPKFQNQRLLD 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 K E LL ++N + Y+ A + N+ + + S++ + ++ ++ Sbjct: 452 KYIRAERDLLYYMMNDKNVAM-MYEAKAGFMF-NDIYRIIASYIIDYYRQEVVLEVADLI 509 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + + + ++ + + Y + + + + + +KEE+ Sbjct: 510 SSIEDENLVQNIIEISQL--------GLPKLKDTKAIDDYIETI----KEKTVMVKKEEL 557 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 K +A + ++ A ++ + + + Sbjct: 558 TKALAD---TFDPKQKAQILKEIIALKDK 583 >gi|332704205|ref|ZP_08424293.1| DNA primase [Desulfovibrio africanus str. Walvis Bay] gi|332554354|gb|EGJ51398.1| DNA primase [Desulfovibrio africanus str. Walvis Bay] Length = 595 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 162/628 (25%), Positives = 270/628 (42%), Gaps = 46/628 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+++ + + ++ +YVD + G + A CPFH E PSF N G Sbjct: 1 MGIDQGIIQNIKSRLDMVEIVRRYVDLK-----PMSGRFVAPCPFHQETKPSFSVNPELG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLI 118 FYYCF C GD F + + G F E+++ LA AGV L DP +K++++ + Sbjct: 56 FYYCFGCQASGDVFDFYARMNGLEFREALEALAEEAGVSLRDEKPDPLAGRKKQLKKTCL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A D+F L + K YL R + + ++ F LG + + L+ L++KGF Sbjct: 116 DMHALACDYFRGMLGSPAGKDAREYLARRTLAAEMVDGFSLGCSDEDWQGLQNFLQKKGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S + +EAGLL D +YDRFR RLIFPI G++IAFGGR + K KYLNS + Sbjct: 176 SPAQAVEAGLLSRNDAG-RTYDRFRGRLIFPIHDLAGRIIAFGGRII-KDGEPKYLNSSD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + ++ KG++LY + A + KS R ++L EGY+DVLSL Q G + V L Sbjct: 234 SPIYTKGEHLYGLYQARPAISKSRR----------VLLTEGYVDVLSLHQYGFREAVGVL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q++ L L +VL FDGD+ G +AA ++ ++ L G VLL G+D Sbjct: 284 GTALTADQVKRLGSLCREVVLVFDGDNAGRKAALRSAEM---ILAQGLTCRVVLLPEGQD 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D +R G AF KL+ ++ E+ + + ++D Sbjct: 341 ADDLLRQSGAEAFAKLLGQAGDGFTYC------AECVRATGSAREVMDFARRFLRGLRDP 394 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKL 476 + +Y + + L + + K + L + + G+ Sbjct: 395 AWKAFYLPKLAENLALAESELRQAIASEREERPSGNNPVGVKTQVKNLPGLPIKRPVGQA 454 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 R+ +L I P Q ++ + N ++LW + Sbjct: 455 RSVEEQRDEQILQFAICFPRYRQLLIEKEMHLGLTNEWSRRLWGTI----ASHSDHDDAY 510 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 ++ L E ++ +L AT++ + +++ R+ Sbjct: 511 LYSVLDENE-RQIWARLA----------ATSKIKPEEAEGEFKEVCRFLDGANWNERR-A 558 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624 + + +G+ + L I E+ Sbjct: 559 SMVAAMNDARKRGDTAEADRLFHIFREL 586 >gi|157826345|ref|YP_001494065.1| DNA primase [Rickettsia akari str. Hartford] gi|157800303|gb|ABV75557.1| DNA primase [Rickettsia akari str. Hartford] Length = 595 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 177/633 (27%), Positives = 305/633 (48%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I I +++ Q V R+ G+Y CPFH EKTPSF +DSK Sbjct: 1 MRVAPEFYEFLRNRINIFDVVRQKVVLTRK-----SGNYVGLCPFHQEKTPSFTVSDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYGIEIPKLTTKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL +R I I+ F +G+AP + + R K Sbjct: 116 LELANKFFIKQLT----PEILNYLHQRNITETTIKEFSIGFAPRN-NKFEKFFRDKNIDI 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 K+ +AGL I + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 171 IKLGKAGL-IGKRENGEIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSEAVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L RG DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPRGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + +G KLI + + L +M+W E ++F T +E+A LE +LK+ N I D L Sbjct: 339 DAVNKHGADFVAKLIDQRISLSEMIWHIEYSGKNFKTAEEKANLEKNLKDYCNKISDSNL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N + +K ++ + +V + Sbjct: 399 KASYYRFFKDQIWQ------------------NLVTKQKKIITKSSNLAPIVSSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P +L+E + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIMLEEKDIRDFILNLNFNNKSLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 555 IT--INSTDNHDFEKVLVYKKEILKIANELQVL 585 >gi|152993832|ref|YP_001359553.1| DNA primase DnaG [Sulfurovum sp. NBC37-1] gi|151425693|dbj|BAF73196.1| DNA primase DnaG [Sulfurovum sp. NBC37-1] Length = 550 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 148/594 (24%), Positives = 247/594 (41%), Gaps = 54/594 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I I ++IG +++ + N Y A CPFH EKTPSF + SK Y Sbjct: 2 IDNASIESLKNSIDIVDVIGNFIELKKAGAN-----YKANCPFHGEKTPSFVVSPSKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ L S+ E++++LA++ L + + + ++E Sbjct: 57 HCFGCGVGGDSIKFVMELEKLSYPEAIEKLASMYNFSLNYTKGSSDYSDAKR-----VLE 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++ +L+N YL +RGI +I+ F +GY PD S+ L + Sbjct: 112 TIQTWYVKNLENN--PTAKQYLLDRGIAQSSIQRFGIGYVPDG-NSVINFLNSALLPLPQ 168 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +EAG+L G Y R R+ FPI S+ G + FGGRT+ KY+NSP+T LF Sbjct: 169 AVEAGILAQG-EGGRYYARLVERITFPIYSTSGGAVGFGGRTI-TNHPAKYINSPQTKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A + K+ + +I+ EGY+DV+ QAG V++LGTAL Sbjct: 227 NKSRLLYGYDLAKESIYKNKK----------LIVCEGYLDVVMFHQAGFTEAVATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P+++L +DGD G+ AA KA + + G VL G+DP Sbjct: 277 TAEHLPLLRKGDPKVILAYDGDKAGVAAALKAAQM---LSVSGFDGGVVLFPDGQDPADL 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I A KL+ E+ PL+ + ++ + P + K ++ + Q ++ Sbjct: 334 IAKGQSEAVAKLLREAKPLIPFVLEKTIYAYDLHDPRAKEAAFGAAKQFLDGL-SQIIKD 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y L + + GR + ++ RD + Sbjct: 393 AYIPMAATLLGVS-PALFGKQTQPGRAKESFSQKRD----------------------DV 429 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + ++L TL+ P ++ + + ++S L S E + + + Sbjct: 430 AQLSILKTLLEKPELIDSVLDVIDVNMFGG--YAAMFSALISGEKEYPHLMGLAVDDTFQ 487 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 EL L + + + L + ++ R K Sbjct: 488 VMDEAELQGVLRNFLIKHYDMKLKHIVADQTIPFEKKSFLIRKIKTDIIPRLKR 541 >gi|83648910|ref|YP_437345.1| DNA primase [Hahella chejuensis KCTC 2396] gi|83636953|gb|ABC32920.1| DNA primase (bacterial type) [Hahella chejuensis KCTC 2396] Length = 600 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 162/614 (26%), Positives = 275/614 (44%), Gaps = 36/614 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-- 60 P+ F+ DLL + +++LI + V+ + Y CPFHDEK+PSFH + Sbjct: 5 IPQAFVDDLLSRVDLASLIAERVNLKKSGA-----TYQGRCPFHDEKSPSFHVYNENHPA 59 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++F+ SF E+V++LA GV +P D E+K L Sbjct: 60 HYHCYGCGAHGDAINFIKETEHLSFNEAVEQLAKRCGVEVPR-DKVAEQKVSQNKSLYDA 118 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F +L + + YL RGI +++ +G+AP R L + Sbjct: 119 SSHADSAFRQALGNHPQRGVAQEYLKRRGISPEMADLYGIGFAPAQRQFLSGTSDRSLVK 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + L + + +D F+NRL+FPIR +RG+ IAFGGRTL + KY+NSPE+ Sbjct: 179 A----LSTLRLVIEKEQDRFDMFQNRLMFPIRDTRGRTIAFGGRTL-GNDRSKYINSPES 233 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHK LY + A +K +I+VEGY+DV+SL Q GV N V+++G Sbjct: 234 PIFHKSNVLYGLWEARKQSRKL----------EQLIVVEGYLDVISLAQFGVVNAVAAMG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA E L L S IV CFDGD GL AA KA++ +L G +V+F++L GEDP Sbjct: 284 TATNEDNLSHLLNTSQDIVFCFDGDKAGLAAADKALNNLLPMFQDGYKVSFLILPEGEDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+F+R G AF + I + PL + ++ + + + + L + + I Sbjct: 344 DTFVRNEGADAFRERIANATPLSEYFFQAMSRGLDLSIAENKGILSTQARAALKVINAPV 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ + RL +L + K + + + Sbjct: 404 LKDA----LYQRLNELTRSSRWGDRQGKHGGDWKKGDWKGKKGFSFQNRDEPREEPIPVP 459 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + A L + P+ +E L + ++ + L ++ +++K E++ Sbjct: 460 NRIAARACLGLYVK-PSWAKEISNTL-NYEITQDDERAL-TYFLEWLLKEKIESAEDLLY 516 Query: 540 RL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 RL +R F L L+ + + E+ +V R+ + ++ + + Sbjct: 517 RLTVDPHQQRRFKNLFNSLEHIFGTEEIEAGAQESLLVLKRKYFDRSFDKIHQDLSRDPK 576 Query: 595 KEEIEKQIAQVTAK 608 +E+ ++ ++++ Sbjct: 577 NKELHEKFRTMSSE 590 >gi|323440460|gb|EGA98172.1| DNA primase [Staphylococcus aureus O11] gi|323443234|gb|EGB00852.1| DNA primase [Staphylococcus aureus O46] Length = 563 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 142/590 (24%), Positives = 247/590 (41%), Gaps = 33/590 (5%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPFHDEKTPSF ++ K +CF C G+ F + SF+E+V+ L V + + Sbjct: 2 CPFHDEKTPSFTVSEDKQICHCFGCKKGGNVFQFTQEIKDISFVEAVKELGDRVNVAVDI 61 Query: 103 V---DPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFK 158 + +I + E+ +F++++L K ++ YL ERG I+ Sbjct: 62 EATQSNSNVQIASDDLQMIEMHELIQEFYYYALTKTVEGEQALTYLQERGFTDALIKERG 121 Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 +G+APDS + + L++KG+ E EAGLL + + + YDRFRNR++FP+++++G+++ Sbjct: 122 IGFAPDSSHFCHDFLQKKGYDIELAYEAGLLSRNEENFSYYDRFRNRIMFPLKNAQGRIV 181 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 + GRT G+ KYLNSPET +F K K LYN A ++K I+L+E Sbjct: 182 GYSGRT-YTGQEPKYLNSPETPIFQKRKLLYNLDKARKSIRKL----------DEIVLLE 230 Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338 G+MDV+ AG++NVV+++GT L++ + + KL+ I L FDGD G A K Sbjct: 231 GFMDVIKSDTAGLKNVVATMGTQLSDEHITFIRKLTSNITLMFDGDFAGSEATLKTGQ-- 288 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 L G V + L G DPD +I YG AF + ++ + Sbjct: 289 -HLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTAFVKNDKKSFAHYKVSILKDEIAHND 347 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 L + I+ +K L+ + ++ E N D Sbjct: 348 LSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQLANEIQ--FNQAPANYYPED 405 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + G + + + E A L L+ Y+ + + N + + Sbjct: 406 EYGGYIEPEPIGMAQFDNLSRQEKAERAFLKHLMRDKDTFLNYYESVDKYNFTNQHFKYV 465 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + L + E + + Q + E L L++ + + + Y Sbjct: 466 FEVLHDFYAENDQYNISDAVQYVNSNELRETLISLEQYSLN--------DEPYENEIDDY 517 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + E + ++ + T G+ E + + + + Sbjct: 518 VNVINENGQET-----IESLNHKLREATRIGDVELQKYYLQQIVAKNKER 562 >gi|317403352|gb|EFV83865.1| DNA primase [Achromobacter xylosoxidans C54] Length = 687 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 239/483 (49%), Gaps = 28/483 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI++LL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQELLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF E+V+ LAA AG+ +P P+ +++ + Sbjct: 57 HCFGCGAHGSAITFLMEHTGASFPEAVRTLAASAGMTVPEENRSPRQQQETARRKAEESR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + YL +RG+ F LG++ R+ L + Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++E+GL+I+ + YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPTLVESGLVIESEEGRR-YDRFRERIMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG+ LY + A ++ +I+VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGQELYGLWEARQAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTATTPDHVKKLLRTSDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPSE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + E++ L L + + + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRACLGEAVALSRFLLDELASRHNMDEAEGRASCLHEAKPLLASIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + + +L QL + + + A + ++L G Sbjct: 401 ECALRVQIEREMA-KLVQLTPEEMAQVLAQQPAKPFGAPAKPAPVEGGGGAAAALHDGAP 459 Query: 477 SKK 479 + Sbjct: 460 ADA 462 >gi|167627929|ref|YP_001678429.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597930|gb|ABZ87928.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 606 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 161/596 (27%), Positives = 281/596 (47%), Gaps = 28/596 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +FIK+L+ + I++++ +YV+ + N Y ACCPFH+EKTPSF N K F Sbjct: 4 KISNNFIKELVANADIADVVSRYVNLTKSGKN-----YKACCPFHNEKTPSFFVNSQKRF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF CH GD L+F+ + F+E+V+ LA I G P+ + E KE++ I Sbjct: 59 FHCFGCHESGDALTFVKKINNLDFVEAVKTLAEIVGKPVEYENYSQEDLHKEQLFNKCIG 118 Query: 120 LIEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A ++ +L N+ K YL +RGIDS ++F +GY+ + ++ + + Sbjct: 119 FLAIAQKYYRWNLGNSASKEKAVGYLKKRGIDSDLAKVFGIGYSSEGWNNVTQLAKSVNV 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ +I+ GL I D YDRFRNR++FPIR+ +G VI +GGR + + VKY+NSPE Sbjct: 179 SEDILIDTGLAIKNDKG-NVYDRFRNRIMFPIRNIQGNVIGYGGRVIDDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K LY + +K ++ +I+VEGYMDV+ L + G + V++L Sbjct: 238 TIVFQKNNILYGLYEYRE-----KKKQYPDLANQSLIVVEGYMDVIGLAKYGFYSAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA ++ ++L++ S IVLCFDGD G +A + I ++L L ++ + L G+D Sbjct: 293 GTAFSQNHAKILFRESNSIVLCFDGDSAGQKAVVRTIKIILPILDGNKKLRILTLEHGKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + +S ++D + N+ + + ++E+ +LK + I + Sbjct: 353 PDDYIKEYGLDNFNNSLKKSQSVLDFIINYIINNKDVSKAECKSEIVENLKEFLIDIDEN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +++ + + D + K Sbjct: 413 IYTESLISTVAEKININANQIKKLLKLGKQRSNIVNLDIDNYK----------YRQKRLS 462 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L + + A + +E + ++ + E E Sbjct: 463 KSMLLEEVILAEIFVNIADFRMLLKENDFEIFATSKNLDILVKSLKILKEDSSNEIEAVI 522 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L Q + + E + + ++ A + +L Sbjct: 523 LIQLLAEDYPDYREYFFELLSQGINKARKKSDGEQYCDQILKDLKRIEANSVKEQL 578 >gi|332524403|ref|ZP_08400617.1| DNA primase [Rubrivivax benzoatilyticus JA2] gi|332107726|gb|EGJ08950.1| DNA primase [Rubrivivax benzoatilyticus JA2] Length = 451 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 154/468 (32%), Positives = 224/468 (47%), Gaps = 30/468 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++GQ+V+ R N CPFH EK+PSF + SK FY Sbjct: 2 IPAGFLQDLLSRVDIVDVVGQHVELKRGGANL-----MGLCPFHAEKSPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE------KKEKIQTD 116 YCF C GD + FL+ LG SF+E+V+ LA G+ +P E K + + Sbjct: 57 YCFGCGASGDAIRFLTEHLGLSFVEAVRDLAQRVGMQVPEEQLSAEELVRRDKLRERRLS 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L ++ A DF+ LK + R YL RG+ F LGYAP +L + Sbjct: 117 LGEVLVRANDFYRGQLKTS--PRAVGYLKARGLTGVVAARFGLGYAPPGWRTLAGVFPRY 174 Query: 177 GFSEEKI------IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + EA D+ YD FR+R++FPIR+ G+VI FGGR L Sbjct: 175 DDPLLEEAGLVRHREAADGESEDSERGRYDWFRDRVMFPIRNVAGEVIGFGGRVL-DDSK 233 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KY+NSPET LF KG+ LY F A L+ I+VEGYMDV++L Q G Sbjct: 234 PKYINSPETPLFSKGRELYGLFEARQALR----------ERGCAIVVEGYMDVVALAQHG 283 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V N V++LGTA T ++ L++ + IV FDGD G RAA +A++ L H V F Sbjct: 284 VNNAVATLGTACTAEHVQKLFRFTDAIVFSFDGDAAGRRAAARALEAALPHATDLRSVKF 343 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPDS++R G AFE+ + ++PL L + E+ ++ + RA L + Sbjct: 344 LFLPPEHDPDSYVRELGVEAFEQALAAAVPLSRQLVELAAEDADLSSAEGRARLAAQARP 403 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 + + + L+ I +R + + + A Sbjct: 404 LWSALPEGSLKDQLLGEIAERARLPREDLARRWGLRAGEATRPAPEAP 451 >gi|89256387|ref|YP_513749.1| DNA primase [Francisella tularensis subsp. holarctica LVS] gi|115314833|ref|YP_763556.1| DNA primase [Francisella tularensis subsp. holarctica OSU18] gi|156502476|ref|YP_001428541.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367724|ref|ZP_04983745.1| DNA primase [Francisella tularensis subsp. holarctica 257] gi|254369359|ref|ZP_04985371.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp. holarctica FSC022] gi|290953810|ref|ZP_06558431.1| DNA primase [Francisella tularensis subsp. holarctica URFT1] gi|295312821|ref|ZP_06803553.1| DNA primase [Francisella tularensis subsp. holarctica URFT1] gi|89144218|emb|CAJ79488.1| DNA primase [Francisella tularensis subsp. holarctica LVS] gi|115129732|gb|ABI82919.1| DNA primase [Francisella tularensis subsp. holarctica OSU18] gi|134253535|gb|EBA52629.1| DNA primase [Francisella tularensis subsp. holarctica 257] gi|156253079|gb|ABU61585.1| DNA primase [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122309|gb|EDO66449.1| hypothetical protein FTAG_00330 [Francisella tularensis subsp. holarctica FSC022] Length = 605 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 160/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+ L Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + D + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + +K + + + ++ K Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L L + A + + ++ + + E E Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E L +L + + ++ + RL Sbjct: 520 LIQLLAEDYPDYREYLFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575 >gi|157804250|ref|YP_001492799.1| DNA primase [Rickettsia canadensis str. McKiel] gi|157785513|gb|ABV74014.1| DNA primase [Rickettsia canadensis str. McKiel] Length = 594 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 176/633 (27%), Positives = 297/633 (46%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS++I Q V ++ N Y CPFH EKTPSF NDSK Sbjct: 1 MRVASEFYEFLRNRINISDVIRQKVVLTKKSAN-----YVGLCPFHQEKTPSFTVNDSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA + +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLATDYSIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + YL R I ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILNYLHGRNITEKTVKEFSIGFAPKNNKFEKFFHDKNIDIV 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPETI Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETI 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV+ L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NQSILVEGYFDVIVLHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SITENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE LKN + I D L Sbjct: 339 DAVNKNGADFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKATLEKILKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y + +D++ Q N + +K ++ L + ++ + Sbjct: 399 RSSYYRFFKDQIWQ------------------NLVIKQKKVKTKSLNLTPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ PAIL+E + ++ ++N L++ ++ ++ + EI Sbjct: 441 EMLEHAFCALLVRFPAILEEKDIKDFILNLNFNNKSLEEFRNWYLNEIIANN-VAASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNVRIDLLWQW-----LHKKYYLINLQQEY- 553 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I T + EK + + ++ ++ + Sbjct: 554 -MYIINSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|309806595|ref|ZP_07700592.1| putative DNA primase [Lactobacillus iners LactinV 03V1-b] gi|308167015|gb|EFO69197.1| putative DNA primase [Lactobacillus iners LactinV 03V1-b] Length = 562 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 153/591 (25%), Positives = 256/591 (43%), Gaps = 36/591 (6%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPFH EKTPSF ++SK F+ CF C G+ FL SF ESV +A IA + +P Sbjct: 2 CPFHQEKTPSFTVSESKQFFKCFGCGKGGNVFKFLMDKENISFPESVISVAKIAHITIPG 61 Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGY 161 + + ++ AT+F+ H L + + Y+ ER + S I FK+GY Sbjct: 62 EYNNDAIY--KKNPIKQIYSDATEFYQHILLTTKLGEVALKYVQERELTSEIISHFKIGY 119 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 AP + L L+QK +S++ + ++GL I DRFR+RL+FP+ G IAF Sbjct: 120 APKADNILYIFLKQKNYSQDLLEQSGLFIKN-EKGKLLDRFRDRLMFPLCDELGDPIAFS 178 Query: 222 GRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR +S + KY+NSPET LF K K LY+F A + + N+ + +IL EGY Sbjct: 179 GRRISNDSQIAKYVNSPETPLFTKSKLLYHFSEAKHAV----------NAENHLILYEGY 228 Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MDV++ + G++ V+S+GT+LT Q+ +L +++P I++ +DGDDPG A +AI L Sbjct: 229 MDVIAAYKCGIKTGVASMGTSLTSQQVYMLRRVTPNIIINYDGDDPGQHAMERAIKL--- 285 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 P + V L DPD +++ YG + + + + L +R + + + Sbjct: 286 FNYPNMNLGIVSLPENLDPDEYVKKYGPEKYVNEVKAATTSTEFLLQRMAKKYNLFNDRD 345 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK---KNARHR 457 + + I D Y Q + +LQ + R + + + Sbjct: 346 KLDFINESIALIAKNDDPIEIDIYIQKLAQKLQVSVESLKARLLREQRKIRTAINHQKQI 405 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 P+ + L S + LL I++ + + N Q+ Sbjct: 406 QALYPADEVTPKQLDNVHDSSASFTEQKRLLFLFIHNDNARLYLLTK--KFIFPNESYQQ 463 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 L S + + + L+ + + + +E I D Sbjct: 464 LADLWLSYLEKNPNPNISGFADFIPKD-----LQSIIVNMELTDMPYTFSEGEIDD---- 514 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 Q +L K+ +L + + + QI K +++ L + E+ +I Sbjct: 515 --QIASLIKQKTIL--EIQRLYDQIKVAQQKNDSQLIIQLTQKIIELKRKI 561 >gi|313207345|ref|YP_004046522.1| DNA primase [Riemerella anatipestifer DSM 15868] gi|312446661|gb|ADQ83016.1| DNA primase [Riemerella anatipestifer DSM 15868] gi|325335196|gb|ADZ11470.1| DNA primase (bacterial type) [Riemerella anatipestifer RA-GD] Length = 640 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 145/659 (22%), Positives = 274/659 (41%), Gaps = 54/659 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I + I + ++G+YV R +N Y PF DEKTPSF + SK + Sbjct: 2 ITKETIDKIFSAIRVEEIVGEYVQLKRAGSN-----YKGLSPFVDEKTPSFIVSPSKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLI 118 FS G +SFL + S+ E+++ A G+ + ++ ++EK + L Sbjct: 57 KDFSSGKGGTAISFLMEIENFSYPEALRFAAKKYGIEIEEHQRELTEEEKTAQTEKDLLY 116 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ EVA ++ + + + Y ER + I+ F+LGY+P + + E+ K Sbjct: 117 KIHEVANHYYQKQIWETEEGKSIGLSYFKERELREDIIKKFQLGYSPIQKNAFTEYAISK 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 G+++E + ++GL I D + DRFR R+IFPI S G+V+ FG R L ++ KYLN Sbjct: 177 GYTKEILEKSGLSIFTDYAPDGLDRFRERVIFPIHSFSGRVLGFGARILKSNVKTAKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET ++HK LY + + K + +LVEGYMDV++L QAG+++VV Sbjct: 237 SPETEIYHKSNVLYGLNQSKQAISKQ----------NLCLLVEGYMDVVALHQAGIEHVV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GTALT Q++L+ +L+ + + FDGD G++A++++ID++L G + +L Sbjct: 287 ASSGTALTTEQIKLIKRLTENVTILFDGDAAGIKASFRSIDMLLSE---GMNIRILLFPD 343 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + K E I + + P +++E + + + Sbjct: 344 GDDPDSFSRKHPKEFVEDFIQNNAQDFINFKAEILLKDVEHDPIKKSEAIRDIVKSVAFV 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + + Y + I ++ Q E + + + P +L + Sbjct: 404 GNVLKQEIYLKEISNKFGLSEQSLFNELGIQQQVKEQQHLTPKKATPQPQPKLEVITSDF 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQ------------------ELADIRYDNNEL 515 K + E ++ ++ + + E E + + Sbjct: 464 TKANTALLYLEEQMVELMLKYGDYIIEMKDAEDKVYQTTVIEEVICRMEEDNCEIQSETN 523 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDV 574 +K+ + + + + E ++ L + Sbjct: 524 KKIINEIKQGIQTNELRSERFFITLMNEEITNKVANALVEPYQLSDWKKHNIYLLPKEKS 583 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + + E+++ EAE + + ++ + + I+ Sbjct: 584 INKLVADTIYRYKREYIMKMIEDLKN--------TEAEDKTEIYQKIIKLTMLKNTIDQ 634 >gi|241668481|ref|ZP_04756059.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877015|ref|ZP_05249725.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843036|gb|EET21450.1| DNA primase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 606 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 161/596 (27%), Positives = 280/596 (46%), Gaps = 28/596 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +FIK+L+ + I++++ +YV+ + N Y ACCPFH+EKTPSF N K F Sbjct: 4 KISNNFIKELVANADIADVVSRYVNLTKSGKN-----YKACCPFHNEKTPSFFVNSQKRF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF CH GD L+F+ + F+E+V+ LA I G P+ + E KE++ I Sbjct: 59 FHCFGCHESGDALTFVKKINNLDFVEAVKTLAEIVGKPVEYENYSQEDLHKEQLFNKCIG 118 Query: 120 LIEVATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + +A ++ +L N+ K YL +RGIDS ++F +GY+ + ++ + + Sbjct: 119 FLAIAQKYYRWNLGNSDSKEKAVSYLKKRGIDSDLAKVFGIGYSSEGWNNVTQLAKSVNV 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ +I+ GL I D YDRFRNR++FPIR+ +G VI +GGR + + VKY+NSPE Sbjct: 179 SEDILIDTGLAIKNDKG-NVYDRFRNRIMFPIRNIQGNVIGYGGRVIDDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K LY + +K ++ +I+VEGYMDV+ L + G + V++L Sbjct: 238 TIVFQKNNILYGLYEYRE-----KKKQYPDLANQSLIVVEGYMDVIGLAKYGFYSAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA ++ ++L++ S IVLCFDGD G +A + I ++L L ++ + L G+D Sbjct: 293 GTAFSQNHAKILFRESNSIVLCFDGDSAGQKAVVRTIKIILPILDGNKKLRILTLEHGKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + +S ++D + N+ + + ++E+ +LK + I + Sbjct: 353 PDDYIKEYGLDNFNNSLKKSQSVLDFIINYIINNKDVSKAECKSEIVENLKEFLIDIDEN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + +++ + + D + K Sbjct: 413 IYTESLISTVAEKININTNQIKKLLKLGKQKSNIVNLDIDNYK----------YRQKRLS 462 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L + + A + +E + ++ + E E Sbjct: 463 KSMLLEEVILAEIFVNIADFRMLLKENDFEIFATSKNLDILVKSLKILKEDSSNEIEAVI 522 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L Q + E + + ++ A + +L Sbjct: 523 LIQLLAEDYPDYREYFFELLSQGISKARKKSDGEQYCEQILKDLKRIEANSVKEQL 578 >gi|190570640|ref|YP_001974998.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019109|ref|ZP_03334916.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356912|emb|CAQ54290.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995218|gb|EEB55859.1| DNA primase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 577 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 166/634 (26%), Positives = 280/634 (44%), Gaps = 75/634 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + + +S+++G+ V +R + CPFH+EKTPSF ++ KG YYCF C Sbjct: 4 IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNVKGLYYCFGC 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD F+S G SF E+++ LA++AGV LP K L + +A + Sbjct: 59 SAHGDAFEFISQTEGLSFKEALENLASVAGVELPKNLSFA----KENDKLFSALNLAASW 114 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F ++ + YL +R I I+ F++GYAP S L+E+L G +E +I+ G Sbjct: 115 FAQK-----NRGVMAYLRQRKISLKIIDKFRIGYAPSS--GLKEYLNSSGIKDEILIDVG 167 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 L+ S D F +RLIFPI + G+VI FGGR L+ + KYLNSPE+ LF K +N Sbjct: 168 LINK-----NSRDYFYDRLIFPIHNITGKVIGFGGRALNSEQQPKYLNSPESQLFKKREN 222 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY AL+ ++K + +VEGYMDV++L QAG+ N V+ LGTA++ Q+ Sbjct: 223 LYGLNFALSEIRKK----------QHLFVVEGYMDVIALHQAGISNTVAPLGTAISAEQI 272 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365 + LWK + I +C DGD G AA + +LVL L PG + FV L +DP Sbjct: 273 KNLWKFAKEISICMDGDSAGRHAAIRIAELVLPILEPGYTLKFVTLPNNKDPYDICNELE 332 Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Y S L +N P++ + LE +N I + + Sbjct: 333 YKTEDVLSAFNHSTELHSEYLWHHIIGRNLQNYEKFAPEKYSILEHKFMKYVNAIGNSSI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R YY +++ +L + + + K + S L+++ Sbjct: 393 RRYYRDYFYNKVSELRRNFKKLI-----FNSKATKGEYLYNKSPELIEA----------- 436 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +A +L + P IL +++ + + N E++KL + + + F E + Sbjct: 437 EQNQAIILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKKLQQCVINMVTNESNFNKEILL 495 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q + + + + + + + + L ++ + Sbjct: 496 QE----------SSVIKFIFEKTSVLNSQLSEKRSAETVWNNIV--------LRKELNVL 537 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +++ + G + LI + ++ I +++ Sbjct: 538 QEEKIKARLGGNFDLEERLIEQIKQIEDSIQEMQ 571 >gi|258406015|ref|YP_003198757.1| DNA primase [Desulfohalobium retbaense DSM 5692] gi|257798242|gb|ACV69179.1| DNA primase [Desulfohalobium retbaense DSM 5692] Length = 573 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 160/624 (25%), Positives = 264/624 (42%), Gaps = 60/624 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D I+ + + I +++ +YVD + + CPFH E PS + KGF Sbjct: 3 RRSGDTIEAIKARLNIVDIVRRYVDLRQVG-----DRWAGVCPFHQETKPSLSVHPEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRL 120 +YCF C GD F + G F ++++ LA AGV L DP+ ++++ + + + Sbjct: 58 FYCFGCQASGDLFDFYCMINGLEFRQALEELAREAGVTLNDRPDPQAAQRQQERRACLEM 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A FF L++A ++ YL+ RG+D + F LGYAP+ +L HL+Q G+S Sbjct: 118 HSLAQSFFQRQLESAEARQAREYLEARGVDETMQDYFGLGYAPEQWQALCGHLQQSGYSP 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +K + AGLL YDRFR R+ FPI G+VIAFGGR + +GE KYLNS ++ Sbjct: 178 QKGVTAGLLSQNKKG-RIYDRFRGRVTFPIHDLGGKVIAFGGRVIGEGEP-KYLNSSDSP 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG +LY + A + S ++L EGY DV++L + G N LGT Sbjct: 236 IYKKGAHLYGLYQARQAV----------TQSKEVLLTEGYADVIALVRYGFTNACGVLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE Q+R L L+ R+ L +DGD G +AA ++ ++ L G + V L GED D Sbjct: 286 ALTEEQVRRLAGLARRVTLVYDGDRAGRQAASRSAEM---LLRQGVQCRVVSLPDGEDVD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S ++ G F++ + E+ + + E+ E+ +N + D Sbjct: 343 SLLQGQGAAGFQRYVREAEEGLSFCLRVLRESG------VAREILRWATEFLNGLHDSTW 396 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y+ + L+ + G + + P Sbjct: 397 QAYFLPRVAAGLELSETELRRAVDGNREAKTSGGAQQRGQR-------------LERTSP 443 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 R+ LL I+ PA + D ++LW + + F EE+ Sbjct: 444 GQRDRELLHFAISFPAYTKRLDVLGLDHALATERGRQLWRKI-------QAFSREELLLH 496 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E ++ R ++ R R + E+ Sbjct: 497 LDEGEKRFYIQS------------ELDPIPAERERLVWEGIEQFLHRTRQ-DEKLHEMRT 543 Query: 601 QIAQVTAKGEAEKTAILISILHEV 624 + + G+AE+ L+ ++ Sbjct: 544 ALKKAQEAGDAEEMDRLLQAYTDM 567 >gi|118602331|ref|YP_903546.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567270|gb|ABL02075.1| DNA primase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 593 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 156/642 (24%), Positives = 272/642 (42%), Gaps = 69/642 (10%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 DF DL + I ++I + V + DY ACCPFH EKTPSF + K Y CF Sbjct: 7 DFKDDLPNCVDIVDIINRRVPLKKVGK-----DYKACCPFHHEKTPSFSVSVEKQMYKCF 61 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C G ++F+ +E+++ ++ G+ + V D ++ + L++ Sbjct: 62 GCDEGGGVINFVMKFDNLGLVEAIETISGELGISV-VYDENVKSVDSRLARYRNLMQRVR 120 Query: 126 DFFHHSLKNARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ LK + K + RGI + F+LG+AP S L E + + Sbjct: 121 QFYIQQLKQSPAKDKAVNYAKNRGISGKIAKYFELGFAPPSSNLLSEFEQNDQNIADLKT 180 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 L D S YD F++RL+FPI +++G +IAFGGRT VKYLNSPET +F K Sbjct: 181 MGLLCDDQYRSGQYYDFFKDRLMFPIHNAKGNIIAFGGRTFDNNTKVKYLNSPETPIFSK 240 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 K LY + A Y + S +I++VEGYMDV++L Q G+ VV++LGTA T Sbjct: 241 SKELYGLYHARKYSR----------SIDYILVVEGYMDVIALHQVGISQVVATLGTATTI 290 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L +++ I+ CFDGD+ G +AA++A+++ L + G V F+ L GEDPDS ++ Sbjct: 291 EHLNILSRVTNTIIFCFDGDNAGKKAAWRALNVTLPVIKTGITVKFLFLPDGEDPDSLVK 350 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 F I + PL L+ F+T + + + + I + + Sbjct: 351 KESSKVFVTRIENAQPLSQFLFSHIKAELDFSTIEGKTLFLEKVSTLLRKINYKIYQQQL 410 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--------SSLVKGKL 476 + + + Q ++ + N + + +L+ + Sbjct: 411 LEGLAGEVNQSIEQIKYILERQDTPVQINTFDIPKNYEEPPISDFYDSDDNYKALISAPI 470 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 SL ++ L+N+P+++ E + ++ + Sbjct: 471 KSSNSLI-DQMIGLLLNYPSMIDETVEL------------RVRK-----------INDAD 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--Q 594 + Q L L + + + QQ L LY + ++L Sbjct: 507 VLQNLANSAL------LQEDITLEDIIKPFPQK---------QQLLDLYNKKKVLKNYDY 551 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISIL---HEVHIQIHQIES 633 K+E + ++ K + E ++ + + + + +++S Sbjct: 552 KDEFLDALLKIEKKQKNENALLITNEIEYTKSLQARKGKLKS 593 >gi|116511351|ref|YP_808567.1| DNA primase [Lactococcus lactis subsp. cremoris SK11] gi|116107005|gb|ABJ72145.1| DNA primase [Lactococcus lactis subsp. cremoris SK11] Length = 637 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 154/669 (23%), Positives = 265/669 (39%), Gaps = 84/669 (12%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGFY+CF Sbjct: 7 EVVNDLKSKVNIADLILQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGFYHCF 61 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD + FL FI++V+ LA AGV L + E+K L + A Sbjct: 62 GCGRSGDAIEFLKEYNQVGFIDAVKELANFAGVTLDI-SNDREEKNNPNAPLYEINNQAA 120 Query: 126 DFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 ++ L + +R YL ERGI I+ F +G AP+ + ++L K ++ + Sbjct: 121 RLYNILLMSTELGERARDYLAERGITDDVIKRFNIGLAPEENDFIFKNLSNK---FDEEV 177 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILF 242 A + ++ +D F NR++FPI + GQ I F GR + + KY+N+ T +F Sbjct: 178 MANSGLFHFSNNRVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSATTIF 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K L+N A + K + L+EG+MDV++ +AG+ NVV+S+GTAL Sbjct: 238 DKSYELWNLDKAKPTISK----------RREVYLMEGFMDVIAAHKAGINNVVASMGTAL 287 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE +R L +++ + VL +DGD G A YKA++LV + V V + G DPD + Sbjct: 288 TEKHVRRLKQIAKKFVLVYDGDSAGQNAIYKALNLV-----GESDVQIVKVPEGLDPDEY 342 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + YG T L+ + + + + I ++ + Sbjct: 343 SKTYGLTGLSALMETGRIQPIEFLIDFLRPENLANLQVQLDFIEQIAPMIAKLQSITAQD 402 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYW-------------------------------- 450 Y + + + L + + R Sbjct: 403 AYIRKLVEILPDFEYNQVEQAVNLRRENMNITDHSVSDYGASNLVENFADKRDYSNLDSA 462 Query: 451 -----------KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + + ++ + E LL +I H ++L+ Sbjct: 463 IPIDFEEIFYENNIQPQVADRRNEPAQVFQPTIQVPKLSRSERAEEMLLHRMIYHSSVLK 522 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + Q+ + R+ + Q ++ + + + + + L E + L Q+ Sbjct: 523 KFSQD-DNFRFVHKRYQDIFEKILLEAMVYEQIDESHLASELSEDQ-----RSLFYQIIS 576 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 L + I D+ + + + EE+++Q+A G E+ L Sbjct: 577 LDLPETASSQEINDLVSIFSNEME--------QIKFEELQQQLATAEKAGNKERMLELTL 628 Query: 620 ILHEVHIQI 628 + ++ Sbjct: 629 QIINQKKKL 637 >gi|56708123|ref|YP_170019.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670594|ref|YP_667151.1| DNA primase [Francisella tularensis subsp. tularensis FSC198] gi|224457214|ref|ZP_03665687.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987] gi|254370609|ref|ZP_04986614.1| DNA primase [Francisella tularensis subsp. tularensis FSC033] gi|254874923|ref|ZP_05247633.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604615|emb|CAG45669.1| DNA primase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320927|emb|CAL09052.1| DNA primase [Francisella tularensis subsp. tularensis FSC198] gi|151568852|gb|EDN34506.1| DNA primase [Francisella tularensis subsp. tularensis FSC033] gi|254840922|gb|EET19358.1| DNA primase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159324|gb|ADA78715.1| DNA primase [Francisella tularensis subsp. tularensis NE061598] Length = 605 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 159/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E ++ Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELVKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+ L Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + D + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + +K + + + ++ K Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L L + A + + ++ + + E E Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L + + ++ + RL Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575 >gi|317484460|ref|ZP_07943372.1| DNA primase [Bilophila wadsworthia 3_1_6] gi|316924284|gb|EFV45458.1| DNA primase [Bilophila wadsworthia 3_1_6] Length = 580 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 160/623 (25%), Positives = 258/623 (41%), Gaps = 67/623 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+++ + + ++ +YVD R + A CPFH E PSF N+ +GF+YCF C Sbjct: 8 IQEIKARLNLVDIARRYVDLKRNG-----PRWVAPCPFHQETKPSFSINEEEGFFYCFGC 62 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDLIRLIE 122 GD F + G F E++++LA AGV L K + + L+++ E Sbjct: 63 QASGDLFDFYGQINGLDFKETLEQLAEEAGVTLERGPQKHDGQPAGQTMSKRRQLLKIHE 122 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A F +L Y+ RGI ++F LG++ SL E LR+ GFSE Sbjct: 123 IAAAHFTENLSGRDGAECRDYMARRGISEEVAKLFGLGWSRRDWQSLAEVLRRAGFSESM 182 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +EA LL +YDRFR RL+FPIRS G VIAFGGR ++ + KY+NS ++ L+ Sbjct: 183 GVEAALLGKS-ERGRAYDRFRGRLMFPIRSLSGNVIAFGGRIIANEDEAKYINSSDSQLY 241 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG++LY A + + +L EGYMDV++L Q G + V LGTA Sbjct: 242 KKGEHLYGLQQARRAIA----------TGKPAMLTEGYMDVVTLHQFGYSSAVGVLGTAF 291 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q++ + + + L FDGD PG +AA +A ++ L G VL GED DS Sbjct: 292 TPEQVKRISGFTSHVELLFDGDGPGRKAALRACEM---LLTRGLSCKVVLFPEGEDIDSL 348 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R G FE L + + + + D E ++ +L Sbjct: 349 LRTQGTDIFEDLRRNAPEGMAFCVRCLRDMAPREAVDWAREFLR-------QVELPELVS 401 Query: 423 YYSQAIRDRLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 ++ + L + S R +NA ++ + P + Sbjct: 402 RFASTLSTGLGLAESELRERIIESRGARALPRNAGGQETQPPV---------------RT 446 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + R+ ++ + +P+ L + A + + LW L Sbjct: 447 NPRDREIMTFAVRYPSSLPRLRELGAHLVLSAAWARDLWQKLEEY--------------- 491 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E+++ LD + + + T + +D +G A+ L+ Q + Sbjct: 492 ----PVDEVVQHLDPREKRFWIRCRTGDVPPLDNEEGEFGAIRTMLDTLHLTAQSASVSA 547 Query: 601 QIAQVTAKGEAEKTAILISILHE 623 + Q G E + L E Sbjct: 548 ALRQGAGAGNFEADLEYLRALQE 570 >gi|169334165|ref|ZP_02861358.1| hypothetical protein ANASTE_00559 [Anaerofustis stercorihominis DSM 17244] gi|169258882|gb|EDS72848.1| hypothetical protein ANASTE_00559 [Anaerofustis stercorihominis DSM 17244] Length = 607 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 149/645 (23%), Positives = 280/645 (43%), Gaps = 51/645 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + +DFI+ L+ I +I QYV R T Y A CPFH EKTPSF G Y Sbjct: 5 FKKDFIRRLVDDADIVGIINQYVPLQRSGT-----RYKARCPFHTEKTPSFVVTPEMGRY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-------KIEKKEKIQT 115 +CF C+ GD L FL + F +V+ LA + GV + + + + Sbjct: 60 HCFGCNANGDVLDFLMEMNKLDFSGAVELLADMEGVNVQYEENGNYTRRSENAISYNEKQ 119 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L I+ + ++++ +L + YL +RG+ I+ F LGY+ + +L +L + Sbjct: 120 ELYNCIKDSANYYYKNLMKS--GVPLKYLLDRGLKKETIKKFGLGYSINEFDNLYNYLVK 177 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYL 234 + + L+ ++ YD FR+R++FPI+ G++IAFGGR + KYL Sbjct: 178 EKKYSVNTLIKAGLVRTNDKRGVYDYFRDRIMFPIQDVNGKLIAFGGRIFKNVKNAPKYL 237 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NSPET++F K LYN A L S +ILVEGYMDV+SL G+ N Sbjct: 238 NSPETLVFKKNSTLYNLNNARKEL-----------SEKPLILVEGYMDVISLVNNGINNA 286 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V++LGTA +L+ + + +V+ +D D+ GL A KA ++ V L Sbjct: 287 VATLGTAFNINHAKLINRYTKNVVIMYDSDNAGLNATIKAGEI---LESANIYPKVVRLP 343 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +G+DPDS+I F L+ + ++ K +N + E+ + I Sbjct: 344 KGDDPDSYILNNSIEKFNNLVENGVDSIEFRIKLLEDNHNLLDNWEKVDFIKKACVIIGK 403 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + D + +Y + + +R + E + + + Q + K Sbjct: 404 VDDDVRKEFYIKYLHERTKAEISTIEKEVNTNSFITPNHLEEGKKDDKEQNIR-----KH 458 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ +K + +L +I++ + + + L + ++ +K++ + S K Sbjct: 459 QIKQKIISAQEMILKYMIDNALDIDKIKEVNLDEDILVGDDYKKIYEKIVSCINLGKKVD 518 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E+ + ++L + + S + D+ Q + + +++ Sbjct: 519 FIELFD------YNDILA-----TTMSRIVSLDQNIDSDDLNQAKKTLMVNN-----INK 562 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + +++ I + + E +LI+ +++ ++ + ++ +I Sbjct: 563 KITKVKLAIRDIQESEDKEMLDVLIAEFYKLKSELLKAKNGGTLI 607 >gi|94986010|ref|YP_605374.1| DNA primase [Deinococcus geothermalis DSM 11300] gi|94556291|gb|ABF46205.1| DNA primase [Deinococcus geothermalis DSM 11300] Length = 587 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 268/631 (42%), Gaps = 54/631 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +D+ + I+++IG++V G CPFH EK+PSF + +G++YCF C Sbjct: 5 EDVRARLNIADVIGEHVRLTPAGK----GRLKGLCPFHQEKSPSFQVDTEQGYFYCFGCK 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD SF+ + SF +++++LA GV + + ++ L + A +F Sbjct: 61 AGGDVFSFVQRIENLSFGDALRKLAERVGVQVEARYGERSSRD-----LYDVNAFALAYF 115 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L YL +RG+ IE F+LGYAP+ L R + SE +++EAGL Sbjct: 116 REHLPGP----ALDYLRQRGLTDQTIEAFELGYAPEGWDGLLRRARARNLSERQLLEAGL 171 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI+ S YDRFR R++FPIR G+++ FGGR L KYLN+PET F KG+ L Sbjct: 172 LIENPESGRVYDRFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETDAFKKGELL 230 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y A ++ + +I+VEGYMDV++L Q G V+SLGTALT Sbjct: 231 YGLDKAR----------AGLSNGAELIVVEGYMDVIALHQHGFTGAVASLGTALTAEHAA 280 Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 LL + R+VL FD D+ GL+A +D VL V + G+DP + Sbjct: 281 LLERLGAQRLVLMFDRDEAGLKATLAGLDQVLGAK---FHVRATSVPSGKDPADALLAGD 337 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 + L + E +T + + + + L + ++ D Sbjct: 338 LQGIRNALAGGLDEARYRVQAAVEAHGIDTSEGKRRVLLALLPRMQNL-DP------LDE 390 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 +R++ L + + W + R L + L ++ RE AL Sbjct: 391 GAERIRALTCELLGIQPQALLDWISSKARRRT------LTDTHLAGMRMHPAEEDRELAL 444 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L L+ P +L + + + N ++K+ Q P++I + + Sbjct: 445 LRQLLVDPTLLAKLD---GSMPWRNEAVRKV------MLAAQGAQSPDDILEVFRGQPEE 495 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIA 603 +LL +L + R+ G S T A Y + + + + + +++Q+A Sbjct: 496 QLLIRLLFEGRNTGALSRDTNALYEQKVTAYAAAAVDDIQVGLSIDSMRAEVDLLKRQVA 555 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q + + + + + + S Sbjct: 556 QASPPEQLALLKQIQELQRAIEAEKRARRSS 586 >gi|134301934|ref|YP_001121903.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418] gi|187931643|ref|YP_001891627.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147] gi|134049711|gb|ABO46782.1| DNA primase [Francisella tularensis subsp. tularensis WY96-3418] gi|187712552|gb|ACD30849.1| DNA primase [Francisella tularensis subsp. mediasiatica FSC147] Length = 605 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 159/596 (26%), Positives = 275/596 (46%), Gaps = 31/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+ L Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + D + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + +K + + + ++ K Sbjct: 413 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 459 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L L + A + + ++ + + E E Sbjct: 460 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 519 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L + + ++ + RL Sbjct: 520 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 575 >gi|24214931|ref|NP_712412.1| DNA primase [Leptospira interrogans serovar Lai str. 56601] gi|24195964|gb|AAN49430.1|AE011394_4 DNA primase [Leptospira interrogans serovar Lai str. 56601] Length = 598 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 158/641 (24%), Positives = 282/641 (43%), Gaps = 53/641 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ +DFI + +PI + I +++ +R N + CPFH EK+PSF+ + K Sbjct: 1 MSNKKDFIDRIHREVPIESYISRFIPLKKRGKN-----FIGLCPFHQEKSPSFNVSAEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C GD + F+ + F S++ L+ +G+PL K + L ++ Sbjct: 56 FYYCFGCKASGDLIRFVMSYERVDFSRSLEILSEYSGIPLEEKSSKNSEFSDF---LYKI 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179 ++++ H L K YL R I+ I +F LGYAP+ + +E L+ K Sbjct: 113 NLKVSEYYQHLLHTPTGKNALDYLKSREIEDSEIRLFGLGYAPEGFDTLAKEVLKTKEEI 172 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 I L + YD FR+R++FP+ G+ +AF GR L G+ KY+NS + Sbjct: 173 SGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTVAFSGRILGPGKEAKYINSQAS 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F K + YNFF A ++K S +LVEGY+DV+ L + G +NV++S+G Sbjct: 233 LIFDKSRTFYNFFKAREGVRK----------SGEAMLVEGYLDVIGLVRRGYENVIASMG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+TE +R L K + R+ DGD G + A +A ++ L G + VLL G+DP Sbjct: 283 TAITENHIRTLKKFAERVTFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418 + + +++ + + + + + EN P+++ + +L + I + + Sbjct: 340 FDLSKSLSRPELHEILSDRIQGSEFVVEELLENADSRALPEKKRKSLQNLYSFIQTLGRE 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + ++L + + G + GPS S+L + + Sbjct: 400 TDKQFLLGLGANKLGISMDAVLRDFKGG---------TGAKNGPSNADTSSNLKEVQGIS 450 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 P+L E ++ L+ H + +E++ + + + LW +L++ + ++ P I Sbjct: 451 GPALDCERKIVSMLVKHTGLFS-YSEEISSMEFMDIASSYLWDYLYTIYTGEEEISPVGI 509 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++L D + L R LL ++K Sbjct: 510 LTSELPEDLKQILA---------------PYLLEEDSEKTEPGELHKVFRILLLQQKKFR 554 Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQ 634 IE++I ++ K E T + + L E + I SQ Sbjct: 555 IEEKIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRSQ 595 >gi|332297996|ref|YP_004439918.1| DNA primase [Treponema brennaborense DSM 12168] gi|332181099|gb|AEE16787.1| DNA primase [Treponema brennaborense DSM 12168] Length = 594 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 162/633 (25%), Positives = 270/633 (42%), Gaps = 51/633 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+D++ + +L+G+Y + R T D+W CCPFH EKTPSFH + Y Sbjct: 5 ISQDTIRDVVDRTDLVSLVGEYTRLENRGT-----DWWGCCPFHSEKTPSFHVVPDRKMY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP---KIEKKEKIQTDLIR 119 YCF CH G+ + F ++ SF E+V LA AGV + ++ + + + I Sbjct: 60 YCFGCHEGGNAIDFCMSMEKLSFTEAVVSLAKRAGVEVVYSGGGKMQVPEYDTTKDQYID 119 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L +H+ L K Y+ ERG+ + I FKLGY+P R+ L + LR K + Sbjct: 120 LYTRVAGSYHYFLTATEAGKFALDYVTERGLTAETIAKFKLGYSPADRHWLGQFLRGKNY 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S E + ++GL + + +RL+FPI +GQV+AFGGR L KY+NS + Sbjct: 180 SAEFLEKSGLFSKKYQGVSFFS---DRLMFPIFDRKGQVVAFGGRLLHGD-GPKYINSGD 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 I + KG+ LY F A ++ S +I EGYMDV++ Q G+ N V+ L Sbjct: 236 LIQYKKGETLYAFNFARQAIR----------ESKSVIFCEGYMDVIAYHQCGITNAVAPL 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q++L+ + + L FD D G A +KAI L V + L +D Sbjct: 286 GTALTGEQVKLVRSFADTVYLSFDSDGAGKAATWKAILLCR---EADLTVKIIQLQGAKD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + YG+ + ++ D L + +TP+ + + + I+ +K Sbjct: 343 PAEIMIKYGRDTLTNYVKNAIIDSDYLLSILAKEHQIDTPEGKTKAALAFFPYIDALKSD 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + L Q F E + +AR R S S V KL+ Sbjct: 403 MQKES----CLALLWQTF-NLNPEAVKRDFTNRADARKRISAHESDTGEHSGNVSIKLN- 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E +L +I++ L +++ + L+ L + E I Sbjct: 457 ----AELRAVLVVISNFDSFALMRTTLTADDFEDPLARSLFITLEECYRED-SVSYSSIL 511 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + ++ ++ T+ + Q + ++ L KR L R++ + Sbjct: 512 AKCGGEQVKNMVAKV-----------VTSGEYAENPHQLIEDSIKLIKR-NSLERKRTRL 559 Query: 599 EKQIAQVT--AKGEAEKTAILISILHEVHIQIH 629 +I Q + ++ L+S + +++ Sbjct: 560 MNRIRQFKVATLEDQKELDALLSEKMTLDYELN 592 >gi|94676560|ref|YP_589042.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219710|gb|ABF13869.1| DNA primase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 595 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 162/631 (25%), Positives = 287/631 (45%), Gaps = 54/631 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI LL H I LI ++ + ACCPFH++K PSFH + F Sbjct: 4 RIPRTFISSLLAHTDIVELIDARFKLKKQGK-----HFIACCPFHNDKIPSFHVSSKMQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIR 119 Y+CFSC G+ + FL F+ES++ LA G +P + + + L Sbjct: 59 YHCFSCGSHGNAIDFLMNYDRLGFLESLEELAIRCGWNIPYENNDILNAPQLYSRQRLYD 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+E + F+ SL + ++ YL +RG+++ I F +G+AP ++ ++ + Sbjct: 119 LMEKISIFYQQSLHE-QALVVNSYLQQRGLNATVINDFAIGFAPPGWDNVIKYFGHSAEA 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + G+++ +++ +YD FRNR++FPIR RG +IAFGGR L +G+ KY+NSP + Sbjct: 178 IALLKATGMVV-YNDNGNTYDLFRNRIMFPIRDKRGHIIAFGGRLLGEGQP-KYINSPAS 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHK LY + A + +++VEGYMDV++L Q G+ VV+SLG Sbjct: 236 DLFHKSNQLYGLYEAQQKNANLSK----------LLVVEGYMDVVTLAQFGINYVVASLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T Q++LL++ + +++ C+DGD G AA+K ++ L +LI ++ F+ LS +DP Sbjct: 286 TATTTEQIQLLYRTTDQLICCYDGDRAGREAAWKTLENALPYLIDKRQLRFMFLSNSQDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR GK AFEK I ++ PL + L+ + + + D+R +L IN I + Sbjct: 346 DTIIRKIGKEAFEKYIEQAQPLSEFLFDTLMQQVNLSNLDDRVKLIALALPLINKIPNGI 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + Q + +R+ L + + + K+ ++ K + Sbjct: 406 WRLFLRQLLANRVGILDDNKLEKLLQLNKKRVKSQQNLRIKCTPIHI------------- 452 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P + + + K++ L ++ ++ + Sbjct: 453 -------LIGLLVQNPWLSTLAKRISNKLEQARQPGVKIFIQLVKTCQKEPSLTTGQLLE 505 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQQALALYKRFRLLSRQKEEI 598 F L+ I D+ + + AL + + Q+++I Sbjct: 506 LYRHNKFYAQLETFATW----------NHMIIEDLIERTFIDALTKL--YNSILEQRQDI 553 Query: 599 EKQIAQVTAKGEAEKTAI-LISILHEVHIQI 628 + + E+ + ++ Q+ Sbjct: 554 LIALDRKHGLTTEERKELWYLNQALAKKDQL 584 >gi|297194516|ref|ZP_06911914.1| DNA primase [Streptomyces pristinaespiralis ATCC 25486] gi|297152291|gb|EFH31640.1| DNA primase [Streptomyces pristinaespiralis ATCC 25486] Length = 416 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 122/430 (28%), Positives = 204/430 (47%), Gaps = 27/430 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 D +K + +PI ++ +Y+ NA G+ CPFHDEK+PSF + SKG Sbjct: 4 RINDDDVKAVRDAVPIDAVVSEYLQL----RNAGGGNLKGLCPFHDEKSPSFQVSPSKGL 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIR 119 ++CF C GD ++F+ + SF E+V+RLAA AG+ L + + + L+ Sbjct: 60 FHCFGCQEGGDTIAFVMKIDHLSFSETVERLAAQAGITLRYEEGGYNPTHQRGERIRLVE 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++A F+ L + +L ERG D A + F +GY+P L +LR KGFS Sbjct: 120 AHKIAAQFYVEQLDGPEAEIGRKFLAERGFDQAAAQHFGVGYSPAGWDHLTRYLRGKGFS 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++++ +GL + DRFR RL++PIR G+V+ FG R L ++ KYLN+PE Sbjct: 180 DKELTLSGL--SQEGRRGPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + + +S ++VEGY DV++ AGV +++ Sbjct: 238 TAIYKKSQVLYGIDLAKKEIAR----------TSTAVVVEGYTDVMACHLAGVTTAIATC 287 Query: 299 GTALTEYQLRLLW-----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 GT+ +++L + ++ FDGD G +AA +A + + + Sbjct: 288 GTSFGGDHIKILRRLLMDNATAEVIFTFDGDAAGQKAALRAFEDDQKFAA---ETSIAIT 344 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP G + +KL+ PL + ++ + TP RA + Sbjct: 345 PGGMDPCELRLAEGDESVQKLVETRTPLFEFAIRQMVRRHNLETPAGRAAALDEAAPIVA 404 Query: 414 HIKDQKLRYY 423 IK+ +++ Sbjct: 405 GIKNVAIQHE 414 >gi|213579982|ref|ZP_03361808.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 321 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 121/334 (36%), Positives = 187/334 (55%), Gaps = 19/334 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDN 178 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + +++AG+L+ + ++YDRFRNR++FPIR RG+VI FGGR L ++ KYLNSPET Sbjct: 179 KALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+ LY + A Y + R +++VEGYMDV++L Q + V+SLG Sbjct: 237 DIFHKGRQLYGLYEAQQYSAEPQR----------LLVVEGYMDVVALAQYDINYAVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 T+ T + +L++ + ++ C+DGD G AA++ Sbjct: 287 TSTTADHMHMLFRATNNVICCYDGDRAGRDAAWR 320 >gi|45657568|ref|YP_001654.1| DNA primase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45600807|gb|AAS70291.1| DNA primase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 598 Score = 304 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 158/641 (24%), Positives = 282/641 (43%), Gaps = 53/641 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ +DFI + +PI + I +++ +R N + CPFH EK+PSF+ + K Sbjct: 1 MSNKKDFIDRIHREVPIESYISRFIPLKKRGKN-----FIGLCPFHQEKSPSFNVSAEKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF C GD + F+ + F S++ L+ +G+PL K + L ++ Sbjct: 56 FYYCFGCKASGDLIRFVMSYERVDFSRSLEILSEYSGIPLEEKSSKNSEFSDF---LYKI 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFS 179 ++++ H L K YL R I+ I +F LGYAP+ + +E L+ K Sbjct: 113 NLKVSEYYQHLLHTPTGKNALDYLKSREIEDSEIRLFGLGYAPEGFDTLAKEVLKTKEEI 172 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 I L + YD FR+R++FP+ G+ +AF GR L G+ KY+NS + Sbjct: 173 SGAIQLGLLREKEAGNGRPYDFFRDRIMFPVLDLSGRTVAFSGRILGPGKEAKYINSQAS 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F K + YNFF A ++K S +LVEGY+DV+ L + G +NV++S+G Sbjct: 233 LIFDKSRTFYNFFKAREGVRK----------SGEAMLVEGYLDVIGLVRRGYENVIASMG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA+TE +R L K + R+ DGD G + A +A ++ L G + VLL G+DP Sbjct: 283 TAITENHIRTLKKFAERVTFVLDGDIAGKKGALRAAEICL---KEGMECSIVLLPEGKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT-PDERAELEIHLKNCINHIKDQ 418 + + +++ + + + + + EN P+++ + +L + I + + Sbjct: 340 FDLSKSLSRPELHEILSDRIQGSEFVVEELLENADSRALPEKKRKSLQNLYSFIQTLGRE 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + ++L + + G + GPS S+L + + Sbjct: 400 TDKQFLLGLGANKLGISMDAVLRDFKGG---------TGAKNGPSNADTNSNLKEVQGIS 450 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 P+L E ++ L+ H + +E++ + + + LW +L++ + ++ P I Sbjct: 451 GPALDCERKIVSMLVKHTGLFS-YSEEISSMEFMDIASSYLWDYLYTIYTGEEEISPVGI 509 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++L D + L R LL ++K Sbjct: 510 LTSELPEDLKQILA---------------PYLLEEDSEKTEPGELHKVFRILLLQQKKFR 554 Query: 598 IEKQIAQVTAKGEAEKTAILISIL----HEVHIQIHQIESQ 634 IE++I ++ K E T + + L E + I SQ Sbjct: 555 IEEKIRELDQKRERFFTPEIFTELSFYRKEKEKILEHIRSQ 595 >gi|297566670|ref|YP_003685642.1| DNA primase [Meiothermus silvanus DSM 9946] gi|296851119|gb|ADH64134.1| DNA primase [Meiothermus silvanus DSM 9946] Length = 587 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 158/627 (25%), Positives = 270/627 (43%), Gaps = 59/627 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + +PI L+G+YV G + CPFH EKTPSFH ++SKG YCF C Sbjct: 9 VELIRSRMPIRELVGRYVALKPAGK----GRWKGLCPFHQEKTPSFHVDESKGLCYCFGC 64 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD FL + G F E+++RLA GV LP + +K+E L ++ +A ++ Sbjct: 65 KAGGDIFGFLQKIEGIDFREALERLAQETGVELPESRSQGKKRE-----LYEVLNLAQEY 119 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F L+ YL RG+ +++ F LGYAP S L + L KG + E+ + AG Sbjct: 120 FSTHLQ----AEALAYLKGRGLSDASVQKFGLGYAPQSWDGLIKFLSSKGVTPEEGLAAG 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +L + D +DRFR+R+ FPI+ + G+ +AF R LSK + KYLNSPET +F K Sbjct: 176 VLAERDG--RYFDRFRHRITFPIQDALGRTVAFTARALSKDDQPKYLNSPETPIFKKTLL 233 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY F A L++ R I+VEG DV++L Q G V+ LG+ L Q Sbjct: 234 LYGFPQARQSLRERGRA----------IVVEGLFDVIALHQMGFTEAVAVLGSGLAADQG 283 Query: 308 RLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365 LL + R I L FD D+ G +A ++++L + V V L G+DP + Sbjct: 284 MLLKRYDVREIYLSFDADEAGRKATLQSLEL---EIARSFLVYAVALEGGKDPGDLLLLP 340 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYY 424 G +++ + +LP V+ ++ + + + + + + L +++ + Sbjct: 341 DGPERYQRALEAALPEVEFRFQAAAQGINLESVEGKRRVLEALLPRLLSNDPLDGVAEAL 400 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++DRL + + + A ++ P L + L++K LRE Sbjct: 401 KRVVQDRLG------LERRALEDYLRSRKALPSRRELPPNPGTAFGLARPDLTEKRLLRE 454 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543 ++ L + P + E + ++ + L E Q Sbjct: 455 LDVIALLYSAP----------------DEEFAQWAQYVEDHTWPPEGSLLAEFMQVAKSG 498 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 G +++ + L+ A + Q R R + + ++ Sbjct: 499 VGKARVIRHFQERGEGDRLFDALMKRPDEIPSDLENQLNLSMARLREVYYEI-----RLD 553 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ +A + + + E+ I Sbjct: 554 RLKQDLKAGPSVETLREIQEIQRAIEA 580 >gi|62261434|gb|AAX77989.1| unknown protein [synthetic construct] Length = 640 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 159/596 (26%), Positives = 276/596 (46%), Gaps = 31/596 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 30 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 84 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 85 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 144 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E ++ Sbjct: 145 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELVKSINI 204 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 205 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 263 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+ L Q G V++L Sbjct: 264 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATL 318 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 319 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 378 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + D + + + + +AE+ +LKN + ++D Sbjct: 379 PDDYIKKYGLERFLTALDNSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 438 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + +K + + + ++ K Sbjct: 439 IYSESITATIADKIGIKVEQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLA 485 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE-- 536 K L E +L L + A + + ++ + + E E Sbjct: 486 KNLLLEEFVLAELFVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVI 545 Query: 537 IHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L E + E +L + + ++ + RL Sbjct: 546 LIQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 601 >gi|228471179|ref|ZP_04055992.1| putative DNA primase [Porphyromonas uenonis 60-3] gi|228306994|gb|EEK16076.1| putative DNA primase [Porphyromonas uenonis 60-3] Length = 674 Score = 304 bits (777), Expect = 4e-80, Method: Composition-based stats. Identities = 151/690 (21%), Positives = 287/690 (41%), Gaps = 73/690 (10%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + ++ I +++ +V R+ + + CPFH ++ PSF SK Sbjct: 2 DEQTKQLIIDTARIEDVVSDFVQLRRKGSG-----FVGLCPFHKDRHPSFIVTPSKNICK 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121 CF+C G +SF+ + CSF+++++ LA +P+P + ++++ + L Sbjct: 57 CFACGAGGTPVSFIMKIQNCSFVDALRYLAQKYNIPVPEREMTEEEQQRQNEREALYLAN 116 Query: 122 EVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 EVA FF L + + Y +RG+ S AI+ F LGY+P R +L +++ + G+ Sbjct: 117 EVAAKFFTEQLLSQEEGLDVALPYFTQRGVRSEAIQTFGLGYSPSDRRALAKYVEEHGYD 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 E + GLL S DR+ R+IFPI + G+V+ FGGRT+ K + KY+NSPE Sbjct: 177 MESFVATGLLYAPSEGRPSADRYHERVIFPIYNVGGRVVGFGGRTMRKADKIAKYINSPE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + ++ K + LY + A + I+VEGY+DV+++ Q G++NVV++ Sbjct: 237 SFIYDKSRELYGLYQAKRAIA----------QRDQGIIVEGYLDVIAMHQVGIENVVATS 286 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE Q++LL + S +++ FDGD+ G++AA +++D+ L G ++ ++L GED Sbjct: 287 GTALTESQIQLLRRFSRNVLVLFDGDEAGVKAALRSVDM---LLAEGMQIKLLVLPDGED 343 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F+ + E+ + + P + +L + I I D Sbjct: 344 PDEFVSKRSRAEVEEYFAAHQQDFLTFKSQLYAPQMAQDPQLKTQLMRDILQSIATIPDS 403 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKGKL 476 R Y Q + + + + ++ + P + + + + Sbjct: 404 LERIVYIQQMSQMYGVAEDLLLQQIKQERFSRGRVYQYAPPEAATPEESAPEETPQEVSP 463 Query: 477 SKKPSLREAA-LLLTLINHPAILQEQ---YQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 P EA L+ ++ + + + +E + + +F++ + + Sbjct: 464 LDAPMSNEALDLIRLVVRYGERMLKISVQDEEADESAEPTVIRVSVANFVYQELKQDDIV 523 Query: 533 LPEEIHQRLCERGFGELLKQLD----------------------------------RQVR 558 + + +R+ +L++LD R R Sbjct: 524 IEHPLVKRILNDSNKMMLEELDVSGGESERTCGSFLCNSEIPQVSALAVDLYATPYRLSR 583 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQKEEIEKQI---AQVTAKGEA 611 A + V + Q + + + ++I +QI Q + + Sbjct: 584 KAREELQMPDDENEKVPDEWVQEMTFKVLYTYKLAYAEERCQQISQQIQTLQQEHPEADY 643 Query: 612 EKTAILISIL---HEVHIQIHQIESQEAMI 638 E L+ L E+ + Q Q +I Sbjct: 644 ESYQPLLQELSTWQEIRKMLGQFSGQRVVI 673 >gi|329571350|gb|EGG53037.1| DNA primase [Enterococcus faecalis TX1467] Length = 472 Score = 303 bits (776), Expect = 5e-80, Method: Composition-based stats. Identities = 138/471 (29%), Positives = 228/471 (48%), Gaps = 30/471 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ I ++IGQYV + N Y CPFH+E++PSF + K Sbjct: 4 RIPQEVIEEVRHRTNIVDIIGQYVQLKKSGKN-----YMGLCPFHEERSPSFSVAEDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTD 116 ++CF C G +FL + G SF ESV+R+A + + + + + + + Sbjct: 59 FHCFGCGKGGTVFNFLQEIEGISFPESVKRVADLEHLSVDFDWSEPREVADTPENQQRRS 118 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L++L A + +HH L + YL ERG+ IE F++G+AP R L + + Sbjct: 119 LLQLHSKAAELYHHILVNTKIGEPALNYLLERGLTQELIETFQIGFAPQKRDFLSQVFKN 178 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGES 230 + E +GL + DN T DRF R++FPI +G VIAF GR L E Sbjct: 179 EQLDETLFEPSGLFVQRDNG-TFLDRFYQRIMFPINDPQGNVIAFSGRLLKTADFPGDEM 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF+K + L+NF A ++K + ++L EG+MDV++ Q+G Sbjct: 238 PKYLNSPETTLFNKRETLFNFDRARKEIRK----------ENTVLLFEGFMDVIAAWQSG 287 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V++ V+S+GT+LT Q+R L +++ +V+C+DGD+ G++A +AI L+ + + Sbjct: 288 VKSGVASMGTSLTNEQIRRLERVAKEVVICYDGDNAGVQATNRAIQLLQENSHFDLSI-- 345 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVE-SLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 V + DPD ++R YG AF+ L + R+ N E+ + L Sbjct: 346 VSIPEKLDPDEYVRKYGAEAFQNLANHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELL 405 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + +++ R Y I Q + + + + R Q+ Sbjct: 406 RELTNVQSPLERDRYLNQIAQEFQLSVHSLEEQFNQLKQEQRSVQRQERQQ 456 >gi|227499775|ref|ZP_03929875.1| DNA primase [Anaerococcus tetradius ATCC 35098] gi|227218161|gb|EEI83427.1| DNA primase [Anaerococcus tetradius ATCC 35098] Length = 544 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 161/598 (26%), Positives = 266/598 (44%), Gaps = 57/598 (9%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ D I +L I ++IG+YVD R + + CPFH+EKTPSF +D K Sbjct: 1 MSLISDDKINQILQSSNIVDVIGEYVDLKRSGS-----SFKGLCPFHNEKTPSFTVDDKK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 ++CF C GD +SF+ G S+ ES++ LA AG+ + + + +L Sbjct: 56 QLFHCFGCGAGGDVVSFIMQKEGLSYPESLEFLAHKAGISIDYT--EDPQVNNKNKELYD 113 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + FF+ +L D++ YL +RG+ S + F LGYA DS L +++ K ++ Sbjct: 114 INKDIMMFFYKNLL--VDRKAQQYLKQRGLSSKVVNTFMLGYAKDSWDDLYAYIKTKNYN 171 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 EE I GL I + YD++R+R+IFPI + G+VI FGGR G+ KYLNSPE+ Sbjct: 172 EEDIESLGL-IKKSSKGNYYDKYRDRIIFPIINHFGKVIGFGGRA-VSGQMPKYLNSPES 229 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K NLY +K +ILVEGYMDV++L G+ V+SLG Sbjct: 230 SVFKKRYNLYALNVYKRQKRK------------ELILVEGYMDVIALNNHGLDIAVASLG 277 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L+ + S I +C+D D G++A KAI++ + + L G DP Sbjct: 278 TALTLDQAKLMKRYSDDIYICYDQDAAGIKATEKAIEI---FHQIDVNPSIIDLDPGNDP 334 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D FIR GK AFE I + + + + + S P ER + + IK + Sbjct: 335 DDFIRANGKDAFEDKIKNASDSYNYKYNKILDEYSKANPSERLDKLNLFVEFLASIKQEL 394 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + S Y + + + + ++ ++ + G Sbjct: 395 TQEIFINNVSKLFDIDKITLKQAISRYNKNTDQKMEDKAKFYKNKPIIVEKVDTGFR--- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 IN +L+ + + +D + ++ + + Sbjct: 452 ------------INDLEVLRLFFNQRSDYE----KYREFFDKSIE------NEKINNVKT 489 Query: 540 RLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L E+ + L+ +D + + T + + ++ + LY R + L R K+ Sbjct: 490 FLKEKDVSKFDLEDMDYRYILDYIRDNTNPI----LAEELKRKIILYNRKKELERLKK 543 >gi|303327389|ref|ZP_07357830.1| DNA primase [Desulfovibrio sp. 3_1_syn3] gi|302862329|gb|EFL85262.1| DNA primase [Desulfovibrio sp. 3_1_syn3] Length = 578 Score = 303 bits (775), Expect = 6e-80, Method: Composition-based stats. Identities = 158/626 (25%), Positives = 267/626 (42%), Gaps = 63/626 (10%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 +D I+ + + I +++ ++V+ R + A CPFH E PSF N+ +G +Y Sbjct: 3 SKDAIRAIKERLNIVDIVRRFVELKRNG-----PRWVAPCPFHQETKPSFSVNEEQGMFY 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP------VVDPKIEKKEKIQTDL 117 CF CH GD F + G F E +++LAA AG+ + + ++ + + Sbjct: 58 CFGCHASGDIFDFYGRINGLDFKECLEQLAAEAGITIERGRSNARSQGEERERRSGRQQM 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +R+ E+A F +L++ Y+++RG+ ++ F LG+A SL + LR+ G Sbjct: 118 LRMYELAAGHFSAALQSPEAAECREYIEKRGLSEDIVQRFGLGWARREWQSLADALRRAG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 F +EAGLL + +YDRFR RL+FPI+S Q+IAFGGR ++ + KY+NS Sbjct: 178 FDARLAVEAGLLGQS-GNGRAYDRFRGRLVFPIKSLSNQIIAFGGRIIAGEDEAKYINSS 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ KG++LY A + R +L EGYMDVL+L Q G N V Sbjct: 237 DTPIYKKGEHLYGLAQARRGITTKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTALT Q++ L + ++VL FDGD G +AA ++ ++ L G N VL+ GE Sbjct: 287 LGTALTPEQIKRLSGFASQMVLLFDGDRAGRKAALRSCEM---LLTRGLACNVVLMPEGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 D DS +R G AFE+L ++ + T + ++ Sbjct: 344 DIDSLLRTAGPEAFEELQAKAPDGLRFCVDVLKALAPRETVEWARNFLR-------QVEL 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +L Y + LQ + + + + + L + + Sbjct: 397 PELVSPYVSRLAGHLQLSENELRQGLAAWHSQKQDGRGRAPAQTAKPSLARQN------- 449 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +R+ +++ + +P L + AD+ + ++LW + E Y Sbjct: 450 ----MRDRQIMMYAVRYPERLDDLRALGADLTLQSAVARRLWDKIEELGEESPYH----- 500 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 LD++ ++ EA D + L S QK Sbjct: 501 ---------------LDQREKNFWTLCRGAEAAPRDNGDKELEFLRRDLDAYYASAQKSS 545 Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623 + + + T G+ + L E Sbjct: 546 VSAALRENTGTGDFAADLDYLRALQE 571 >gi|294787102|ref|ZP_06752356.1| DNA primase [Parascardovia denticolens F0305] gi|315226754|ref|ZP_07868542.1| DNA primase [Parascardovia denticolens DSM 10105] gi|294485935|gb|EFG33569.1| DNA primase [Parascardovia denticolens F0305] gi|315120886|gb|EFT84018.1| DNA primase [Parascardovia denticolens DSM 10105] Length = 723 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 140/729 (19%), Positives = 249/729 (34%), Gaps = 119/729 (16%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ + + +++ V G + CPFHDEKT SFH S G + Sbjct: 5 ISKKSVEQVRAAADLYDIVSADVTLKNSGA----GSFVGLCPFHDEKTGSFHVRPSLGTW 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP-----KIEKKEKIQTDL 117 +CF C + GD ++ F ++V+ LA + L D ++K + L Sbjct: 61 HCFGCGLGGDVFGYVEQKENVDFAQAVELLADRYHIELEYEDQGRGKTDRQRKGATRARL 120 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + E FF L L R E F GYAP +L HL G Sbjct: 121 LEVCEQTQKFFASQLPTDDALPARKLLGGRNFTQSDCERFGCGYAPQGWDTLVRHLSSLG 180 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLN 235 +++E+++EAG+ G + ++YD FR R +PIR S G+ + FG R L + + KY+N Sbjct: 181 YTQEEMVEAGVARRG-QNNSAYDYFRGRATWPIRDSTGRTVGFGARRLYDDDKIEAKYIN 239 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +P+T L+HK + LY A + K I++VEGY DV++ AGV V Sbjct: 240 TPDTALYHKNQVLYGIDIAKPNIVKK----------RQIVIVEGYTDVMACHLAGVDVAV 289 Query: 296 SSLGTALTEYQLRLLWKLSPR----------------IVLCFDGDDPGLRAAYKAIDLVL 339 ++ GTA + +++ + ++ FDGD G +AA A L Sbjct: 290 ATCGTAFGQEHAKIVRRFIRDDSLGAVQLVGPTHGSGVIFTFDGDAAGQKAALHAFGLDD 349 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 L + + DP YG A LI + +PL D + + + Sbjct: 350 AFLT---QTFVAVARENLDPCDLRIKYGDEAVRNLIHDRVPLYDFVIQAAIRSFDTQFTT 406 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK-------- 451 + I I+D L Y++ ++ E R + Sbjct: 407 GLVGAMKAVAPVIAKIRDDSLLDSYTRKYAGQIGVSVGDLRREVLAERRRQRIASADAYV 466 Query: 452 ----------------------------KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 ++ R D + +RL Q + K K R Sbjct: 467 PRRSAYGTGSYENSFGYGGGAGSGPGGFESDRSSDSQPLDRRLFQEWANRKKAIDKGYYR 526 Query: 484 --------EAALLLTLINHPAIL-----QEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 E LI P L E + L + + ++ L + Sbjct: 527 VDDTVFSTEQQFFGILIQSPLALTGPMNAELFSRLTRRCFTTPVFRSMFDALEVAGGLPQ 586 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---------------------- 568 P+ + + G +L ++ ++ L + Sbjct: 587 SDTPQGLWIHELTKAAGPVLTRVINELAVLPLPLSAKNRTSAGSDQTASSTGPGPSGRPQ 646 Query: 569 -------ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 A + + L + R ++++++ ++ E + ++ + Sbjct: 647 GPAPVQLAPATEAEVKFAHQLLVGILDADAMRAIAQLKRKMNRLPEGEEKIRLLGTMNTI 706 Query: 622 HEVHIQIHQ 630 + Sbjct: 707 ETWRKDLTA 715 >gi|300778995|ref|ZP_07088853.1| DNA primase [Chryseobacterium gleum ATCC 35910] gi|300504505|gb|EFK35645.1| DNA primase [Chryseobacterium gleum ATCC 35910] Length = 662 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 150/658 (22%), Positives = 286/658 (43%), Gaps = 54/658 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + I + ++G+YV R +N Y PFHDEKTPSF + SK + Sbjct: 2 ISKQTIDKIFSTIRVEEIVGEYVQLKRAGSN-----YKGLSPFHDEKTPSFVVSASKQIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----DPKIEKKEKIQTDLI 118 FS G +SFL + ++ E+++ A G+ + + + + + L Sbjct: 57 KDFSTGKGGTAISFLMEIENFTYPEALRHAAKKYGIEIEEDQRDISEEAKNAQTEKDLLY 116 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ EVA +F L + ++ R Y ER + I+ F+LGY+P+ + + + +K Sbjct: 117 KIHEVANTYFQEILWDDQEGRSIGLSYFKERELRDDIIKKFQLGYSPEKKNAFTAYALEK 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 G+++E + ++GL I +N+ DRFR R+IFPI S G+V+ FG R L ++ KYLN Sbjct: 177 GYTKEILEKSGLSIFPENTPAGVDRFRERVIFPIHSFSGRVLGFGARILKNNVKTAKYLN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET ++HK LY + + + + +LVEGYMDV+SL +G++NVV Sbjct: 237 SPETEIYHKSNVLYGLNQSKQAISRK----------NACLLVEGYMDVISLHMSGIENVV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S GT+LT Q++L+ +L+ + + FDGD+ G++A++++ID+ L G + +L Sbjct: 287 ASSGTSLTTEQIKLIKRLTENVTILFDGDNAGIKASFRSIDM---LLTEGMNIRVLLFPD 343 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + + EK I N P ++AE + ++ + Sbjct: 344 GDDPDSFARKHPQEYVEKYIENEAMDFIDFKAEILLKDIGNDPIKKAEAIRDIVKSVSFV 403 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 ++ R Y + + ++ Q E + + H Q+ + + Sbjct: 404 QNALKREVYLKEVSNKFGLSEQSLFNELDVQKQITQNQTHHVQQQQKEKAAAPKMEIVPL 463 Query: 476 LSKKPSL-------REAALLLTLINHPAILQE------------QYQEL------ADIRY 510 +K E L+ ++ I+ + +E+ + Sbjct: 464 DQEKEDPFLYDVLFMENKLVDHMLMFGDIILKRRNEQNEEYQITVIEEILHHFEEEQYTF 523 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTE 568 E + + + + + + + E +++ L ++ + + Sbjct: 524 LVKENEIIINQVREGIQKDELRSGNFFVSFMDEEITTKVVDALIPLDELENWASRNIYPP 583 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 V + + L+ ++R + +E K++ Q + + K LI + + Sbjct: 584 NYGDKVADQIKGDILLH-KYRYIDYLIKETAKELDQYSNT-DEIKYYELIKKITLLKQ 639 >gi|325677669|ref|ZP_08157321.1| DNA primase [Ruminococcus albus 8] gi|324110637|gb|EGC04801.1| DNA primase [Ruminococcus albus 8] Length = 599 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 127/615 (20%), Positives = 258/615 (41%), Gaps = 29/615 (4%) Query: 4 PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +DF++ L PI+ ++ + V+ G + CPFH + +PS KGF+ Sbjct: 2 DQDFLEKLKFENPINEVMRENGVELKTTGR----GAFMCNCPFHADSSPSCSVVPDKGFF 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD ++F+ F++++ LA AG+ +P + +K K + + + + Sbjct: 58 HCFGCGVSGDVIAFVRKYKNLGFMDAINYLAQRAGMTVPSFSTESDKSYKRRMRIYEMNK 117 Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF LK R Y + +R +D+ I + +G AP+S +L+ H+ G+ E+ Sbjct: 118 AAAKFFRAQLKTPDGVRCLNYLMKQRKLDAATINKYGMGCAPNSFTALKSHMMNLGYGED 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL-NSPETI 240 +++ A LL + +YD F +R +FP G ++ FGGRTL + + Sbjct: 178 ELVSASLLGRSYKTGRTYDFFMDRAMFPFIDVAGNIVGFGGRTLGDDKRKYLNTGDTTSE 237 Query: 241 LF---HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 F + + L + + S ++L EG +DV+SL Q G N V+S Sbjct: 238 AFRSTNDERLLDGYSKSRFVFS-LNYAKDDAVKSKKLLLCEGNLDVISLYQHGFHNAVAS 296 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+R + + +V+C+D D PG +AA +A+ + G + + + + Sbjct: 297 CGTALTKEQVRAMKTYADEVVICYDADAPGQKAALRAVSM---LREGGMGSSVIHMEGAK 353 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I +G+ F LI + D + + +R + + D Sbjct: 354 DPDEYINKFGEEHFRYLINNAADGFDFELGIFAQGLDLSKRVDRNNFLKKAYHAMALEPD 413 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + +R + D+ F + K+ + +++ ++++ + + Sbjct: 414 ETVRDMMEHEVADKYDVTFDVVRASVNEVRMKLKEYEANTERREEYRQMV--LAEENVPN 471 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K E L+ + + E + ++ + ++ ++++ + + PE Sbjct: 472 NKAFKAERGLIYYIYYNGDNAAEMCKGISPDEFTDDFNRRVFVSIMGKLTVGEIITPESF 531 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--- 594 + + L + +V + Y Q++ Y + + + Sbjct: 532 LDEFSHEEVERIRQFLSKYAEYNV---------NGEVARQYIQSIKDYNKKKEVKNAEPT 582 Query: 595 -KEEIEKQIAQVTAK 608 +EE +++A++ K Sbjct: 583 SREEFMQKVAELQRK 597 >gi|118497506|ref|YP_898556.1| DNA primase [Francisella tularensis subsp. novicida U112] gi|195536200|ref|ZP_03079207.1| anticodon nuclease activator family protein [Francisella tularensis subsp. novicida FTE] gi|118423412|gb|ABK89802.1| DNA primase [Francisella novicida U112] gi|194372677|gb|EDX27388.1| anticodon nuclease activator family protein [Francisella tularensis subsp. novicida FTE] Length = 605 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 155/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+SL Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + + + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + R ++ + Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 ++ + +L N I + L L L + + I Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520 Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L + E +L + + ++ + RL Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575 >gi|303245331|ref|ZP_07331615.1| DNA primase [Desulfovibrio fructosovorans JJ] gi|302493180|gb|EFL53042.1| DNA primase [Desulfovibrio fructosovorans JJ] Length = 574 Score = 302 bits (774), Expect = 8e-80, Method: Composition-based stats. Identities = 158/626 (25%), Positives = 251/626 (40%), Gaps = 60/626 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + I+ ++G+YV CPFH E SF+ + KG Sbjct: 1 MKHDASVVTAVKARANIAEVVGRYVTLRPVGN-----RLVGACPFHQETKGSFNVHPDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLI 118 F++CF C GD + F + G F E ++RLAA GV + DP+ K+++ + + Sbjct: 56 FFHCFGCQASGDVIDFYCRINGLEFREGLERLAAEVGVDIGRVKSDPRAAKRKQERDACL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + E+A +F H L+ YL R + IE F LG +P L + LR++GF Sbjct: 116 AMHELADRYFRHVLERPEGATAREYLARRQVSPEMIERFALGVSPAGWQGLCDVLRRRGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 SE+ + AGLL + +DRFR+RL+FPIR G+VIAFGGR + KYLNS E Sbjct: 176 SEDAGVLAGLL-STGKNGRVWDRFRDRLMFPIRDGGGRVIAFGGR-IMGDGEPKYLNSAE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ KG++LY F A ++ KS R +L EGY+DV++L Q G L Sbjct: 234 TPIYTKGQHLYGLFEARPHMTKSRRA----------LLTEGYLDVITLHQFGYGEACGVL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT Q + L + ++ L FDGD PG +AA +A + L G V L GED Sbjct: 284 GTALTTEQTKRLSGFAKQVDLVFDGDPPGRKAALRAAQMFLTL---GGACRVVPLPDGED 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 DS + G+ FE+ + + + + E S + + D+ Sbjct: 341 VDSLLHARGRDGFEECLARAEDGLTFCLRVVRETYSPKDMAAW------AVEFLASLGDE 394 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 LR + + L + + VK + + Sbjct: 395 ALRAVFIPRVSAGLGLAEIELRRFLGEAVSRPGRQ-------------PALVAVKRRRAL 441 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + S R+A LL + P L+ + + Sbjct: 442 EMSPRDAQLLSFAVRRPDYLETLSGAGMAEGLSTEAAR-------------------DFF 482 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 RL G EL +LD + A + + + ++ Q+ + Sbjct: 483 ARLLGGGSDELATRLDAAQTAFWTKAQLEPAVGDEEAAAIYEDICVFLHKCSERDQRRVL 542 Query: 599 EKQIAQVTAKGEAEKTAILISILHEV 624 + + +G + L+ L + Sbjct: 543 MDALRRAQEQGAHAEALRLLGELQAL 568 >gi|291287658|ref|YP_003504474.1| DNA primase [Denitrovibrio acetiphilus DSM 12809] gi|290884818|gb|ADD68518.1| DNA primase [Denitrovibrio acetiphilus DSM 12809] Length = 569 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 132/631 (20%), Positives = 248/631 (39%), Gaps = 64/631 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P I ++L + L+ + V + + CPFH EKTPSF+ + KG Sbjct: 1 MKIPDSKIDEILEQTDLYQLVDEVVPLKKAG----GSSFKGLCPFHTEKTPSFNVHPDKG 56 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +++CF C G+ +SF G SF ++V+ L GV + + K D++ L Sbjct: 57 YFHCFGCGEGGNAISFAMKYHGLSFPDAVRMLGERCGVEIEY----DQTASKDAKDIVAL 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E L + K+ YL ER +E +++GY P + + + + + Sbjct: 113 HEELIIDSRKYLYSIEGKKALAYLTERKFSDRLLEEYQVGYFPPNVDPAKYIRK---YDK 169 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +I +GL +G F +R++ P++ G+ IAF GRT+ + KY+NSPET Sbjct: 170 SVLINSGLFKEG--KYGLRLMFYDRVMIPVKGVTGKTIAFSGRTI-SDQQPKYINSPETE 226 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + L+N A L+KS F ++VEGY DV+ L + G N V+S+GT Sbjct: 227 VFKKRRVLFNMDKAKQSLRKS----------EFAMVVEGYFDVMRLHEYGYGNCVASMGT 276 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LT + LL + + I + FDGD G ++A K+++ + V L GEDPD Sbjct: 277 SLTSDHIGLLRRYTGDIYMLFDGDQAGYKSALKSLE---TFVQADTFPYVVFLPEGEDPD 333 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SFI +GK +F++LI L L+ E + + + +K+ + +K Sbjct: 334 SFIDKHGKDSFDQLIGAKKDL--FLFAAEVLLKKSKDFNAKLRSLDKIKSMLISVKSPYR 391 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + YY+Q + Q + + +R + Sbjct: 392 KDYYAQKLAVMFQVDENTLRKDIDISAAKTTLKRTSGTVEKQQERGRGVTYF-------- 443 Query: 481 SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E + L+ P + + + + + +++ + Sbjct: 444 --CERDFIAALVQLPEDVALNYTDNILPEYFHDRRMSEIYKKVLDVLENGDNINVLLSTP 501 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + + L+ L+ + + ++ + ++R+ ++ Sbjct: 502 DIAKELSPVLVSDLNSDLYRSA--------------AASREKILANSVKDSMNRKIKDA- 546 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + ++ L+ ++ + Sbjct: 547 ---------SDMDEKRRLVIEKFNTKKKLQE 568 >gi|319957801|ref|YP_004169064.1| DNA primase [Nitratifractor salsuginis DSM 16511] gi|319420205|gb|ADV47315.1| DNA primase [Nitratifractor salsuginis DSM 16511] Length = 556 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 145/595 (24%), Positives = 235/595 (39%), Gaps = 53/595 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I I ++IG Y++ + N Y CPFH EKTPSF+ N + Y Sbjct: 2 IDPSSIEALKQSIDIVDVIGNYLELKKAGAN-----YKCNCPFHGEKTPSFNVNPQRQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ S+ E+++++AA+ L K + E + ++E Sbjct: 57 HCFGCGVGGDAIKFVMEYEKLSYPEAIEKIAAMYNFSLRYTQGKGQYGEAKR-----VLE 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + F+ L + YL RG+ +IE F +GY P + + S Sbjct: 112 LMQQFYTSQL--DHQPQALEYLRSRGVTQSSIEDFGIGYVPGGEEVMAFL---RSRSIPL 166 Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + A I Y R R+ FPI S G ++ FGGRTL KY+NSP+T L Sbjct: 167 PLAAEAGIVAQGERGEFYARLNRRVTFPIYSPAGALVGFGGRTL-GDHPAKYINSPQTRL 225 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY + A ++ +I+ EGY+DV+ L QAG + V++LGTA Sbjct: 226 FNKSRLLYGYHRAKEHIY----------HQKELIVCEGYLDVIMLHQAGFRTAVATLGTA 275 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT L LL K P I L +DGD G+ AA KA L+ H G + VL G+DP Sbjct: 276 LTAEHLPLLRKGEPAITLAYDGDSAGVAAALKAARLLAPH---GFEGSVVLFPGGQDPAD 332 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + +KL+ PL+ + ++ N P E+ ++ + + +R Sbjct: 333 MVHQGDLQGLKKLLGSGTPLIPFVLEKIAAAHDLNNPREKERAFGEARSFLETL-SPIIR 391 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y L + + R + R ++ P+ + Sbjct: 392 ESYIPQAATLLGVHAALFTPGRNRNRRQEEFGTSTRSKEDPAWQ---------------- 435 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 A+L TL+ + ++ E + E Q+ + L E I + + Sbjct: 436 ----AILRTLLENERLIDEVLDLIDPRM--AGEYQEAFQALIQGEREHPRLRGIAIAEEV 489 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L Q+ + + + +L R K+ Sbjct: 490 HPLDEEAFWRTLRAQMERFYRLKLQEITRNPRLPYQEKSYWIRKIKTDILPRLKK 544 >gi|297622869|ref|YP_003704303.1| DNA primase [Truepera radiovictrix DSM 17093] gi|297164049|gb|ADI13760.1| DNA primase [Truepera radiovictrix DSM 17093] Length = 609 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 152/638 (23%), Positives = 260/638 (40%), Gaps = 46/638 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P D + + + ++ ++G+ V G CPFH EKTPSFH +GFYY Sbjct: 2 PDDAKERIRERLDLAEVVGEVVALQSAGR----GRLKGLCPFHSEKTPSFHVLQDRGFYY 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C KGD F+ F E++Q L G+ + P+ KK L + ++ Sbjct: 58 CFGCQAKGDVFDFVMRTQNVDFYEALQLLGRRVGIEVTPSTPQGTKKRD----LYEINKL 113 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 A FF L YL R + ++E F LGYAPDS +L +H KGFS++ + Sbjct: 114 ALAFFKAHLPGP----ARDYLLGRKLTPESLEAFDLGYAPDSWDALLKHALNKGFSDDDL 169 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + AGL I +S YDRFR+R++FPI+ + G+V+ F GR L KYLN+PET +F Sbjct: 170 LRAGL-IAESDSGRRYDRFRHRVMFPIKDALGRVVGFSGRVL-DDALPKYLNTPETEVFK 227 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY A ++ + I+VEGYMDV++L Q G +N V++LG LT Sbjct: 228 KAELLYGLDVAKGAIR----------EAGECIVVEGYMDVIALHQCGFKNAVAALGATLT 277 Query: 304 EYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 Q L + R++L FD D+ G RA ++ + V V + G+DP Sbjct: 278 AEQAAQLARQGVERLLLAFDADEAGQRAVLSGLEQSVG---RNFLVRAVRVPFGKDPADA 334 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + AF + + L V ++R +T + + L + Sbjct: 335 VLAGHVGAFREALRGGLSEVAFRFERVLARFDVSTLEGKKGALQELLPALTP-------- 386 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + D + ++ + +H G + + +G+ + + ++ Sbjct: 387 ---RDVFDPVASEMRRLVIDHLGIDGARLDEWVRARTRRKLDTTQLKGMQRGEGASQRAI 443 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ P L E+ + L L + + + Sbjct: 444 IELEVIALLLLEPHRLAERLEVLEA-ALPEAGEDALLREFCAVCRACAFDDRAILRHYQA 502 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + ++L Q ++ +R+ Y +R RLL R +E+ Sbjct: 503 REEGRIVFERLLTQEAQQERRIDVDGHLHKSLSRLRELYLSDEKEAQRKRLLER-MQEVS 561 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + + + L E++ + +++ + Sbjct: 562 GYLTDPNLPTDQ--LQHYYAELREINAMLAARDAERRL 597 >gi|224437045|ref|ZP_03658026.1| DNA primase [Helicobacter cinaedi CCUG 18818] gi|313143517|ref|ZP_07805710.1| DNA primase [Helicobacter cinaedi CCUG 18818] gi|313128548|gb|EFR46165.1| DNA primase [Helicobacter cinaedi CCUG 18818] Length = 551 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 152/597 (25%), Positives = 255/597 (42%), Gaps = 57/597 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ L I I ++IG V+ + +N Y ACCPFHDEKTPSF + +KGFY Sbjct: 2 ISKHSIETLKQTIDILDVIGSVVELKKVGSN-----YVACCPFHDEKTPSFVVSPAKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +C+ C V GD + FL SF+ESV+++AAI L +K + L++ Sbjct: 57 HCYGCGVGGDSIKFLMEYEKLSFVESVEKIAAIMNFTLEYEKSYEKKPD------FTLLD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ +L N K YL R + + +IE F LGY S +L+ + E Sbjct: 111 EIARFYQKNLLNH--KPSLEYLSSRCVANSSIEKFALGYCGASFETLKFLNAKMLNKAEA 168 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + + D Y RF +R+IFPI S G+V+ FGGRT+ G + KY+NSP++ +F Sbjct: 169 LEYGVIGKDSTRE---YARFSDRIIFPIHSPSGKVVGFGGRTM-SGANAKYINSPQSKIF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY ++ A + + K + II+ EGY+DV+ L Q G V++LGTAL Sbjct: 225 NKSKLLYGYYIAKDKIYKQKK----------IIVCEGYLDVIMLHQVGFDYAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L LL K P+++L +DGD G+ AA+KA + G V+ + G DP Sbjct: 275 TKDHLPLLSKGEPKVILSYDGDKAGINAAFKAAKI---LAASGKDGGVVIFANGADPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + + + VD + ++ N P E+ + I+ + L+ Sbjct: 332 VANKQVNELSDMFANPMRFVDFILSHIAKSYDLNNPLEKEKALTESTQFIHTL-SPVLQE 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L ++ A + + Sbjct: 391 EYKPTLAHLLSLPTHLIGSKRPVLHTPPAFTAPTQ-----------------------EI 427 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E+ L+ TL+ P + + + + ++ ++ L VE + I++++ Sbjct: 428 AESVLVKTLLEKPRWIDFTLEYIDISLFAYK--REEFAKLLQQEVEHPLLIAIAINEKIK 485 Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + L + A + + + L + ++L +K E+ Sbjct: 486 PLNDLPSLKEHLRLFIIQAYTQFLSQIPRFEAMSLQEKGTLIKEVKTKILQLKKGEL 542 >gi|268680597|ref|YP_003305028.1| DNA primase [Sulfurospirillum deleyianum DSM 6946] gi|268618628|gb|ACZ12993.1| DNA primase [Sulfurospirillum deleyianum DSM 6946] Length = 552 Score = 302 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 139/596 (23%), Positives = 247/596 (41%), Gaps = 54/596 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I++L + I +IG Y++ + N Y CPFH++ +PS + SK Y Sbjct: 2 IDKTSIENLKQRLDIVEVIGSYLELKKNGAN-----YKCVCPFHNDTSPSLVVSPSKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD + F+ S+ ES+++LA + L +KE + L+E Sbjct: 57 HCFACGAGGDSIKFVMEYEKLSYPESIEKLANMVNFSLTYTTQNGAQKENRK-----LME 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ L + YL +RGI IE F++GYAP S +L + E Sbjct: 112 NLNAFYVKELDKHLSAKN--YLSQRGISEAMIEKFEIGYAPSSFSTLDFLSKHAYTMSEA 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I I + Y RF R+ FPI + +++ FGGRTL KY+NSP+T F Sbjct: 170 IEYGVAGI--GENNQPYARFIERVTFPIYAPSNKLVGFGGRTL-SNHPAKYVNSPQTKHF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A + K +I+ EGY+DV+ L QAG + V++LGTAL Sbjct: 227 NKSQLLYGYPLAKETIFK----------RKALIITEGYLDVIMLHQAGFTHAVATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L L+ + P +++ +DGD+ G+ AA KA L+ H + G VL S+G DP Sbjct: 277 THEHLPLISRGDPEVIVAYDGDEAGINAALKASMLLSQHALRG---GVVLFSQGMDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ A L + P V+ +R + + P + + + Q ++ Sbjct: 334 VQKGLLDALNHLFRKPQPFVEFALERMVKKHNLKDPLSKQNALEEAMAYLKTLP-QAVQE 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + +RL + R KK + Sbjct: 393 SYTGLLSERLGLHHNLVKIQTHKPKRLEKKERVF-----------------------EDM 429 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ T+++ P+++ + + Q+ + L + E E+ + + Sbjct: 430 LELTIIKTILSEPSLIDTVLDTIDSSMFKT--HQEEFMLLLENQREHPKLRRIELWEDIK 487 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 EL+ + + + ++ +Q L + +++ ++ E+ Sbjct: 488 IYDEKELIASMISFLYHYYSEKFQEIRSARELSYEKKQFLIRKIQEKMMKLKQGEL 543 >gi|152989961|ref|YP_001355683.1| DNA primase DnaG [Nitratiruptor sp. SB155-2] gi|151421822|dbj|BAF69326.1| DNA primase DnaG [Nitratiruptor sp. SB155-2] Length = 552 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 141/598 (23%), Positives = 251/598 (41%), Gaps = 65/598 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ L + I ++IG Y++ + +N Y A CPFH E TPSF + SK + Sbjct: 11 IDQNSIEQLKNIVDIVDVIGNYIELKKAGSN-----YKALCPFHQEDTPSFVVSPSKQIF 65 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL S+ E++++LA + L + K ++L + +E Sbjct: 66 HCFGCGAGGDAIKFLMEYEKLSYPEAIEKLAGMYNFSLQRIGSKESS-----SNLFKALE 120 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + K+ YL +RG+ +++IE F+LGYAP+ ++ K Sbjct: 121 SINRLYKKELFSK--KKALDYLKQRGVANNSIEKFELGYAPEGNTQIQYL---KKEFIPL 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I +S Y R R+ FPI S G ++ FGGRT+ KYLNSPET LF Sbjct: 176 QDAIQTGILSQDSGRVYARLVERITFPIYSPNGALVGFGGRTI-TNHPAKYLNSPETKLF 234 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK K LY + A + K +I+ EGY+DV+ L QAG QN V++LGTAL Sbjct: 235 HKSKILYGYHLAKQEIYKK----------KELIVCEGYLDVVMLHQAGFQNAVATLGTAL 284 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K PR++L +DGD G+ AA KA + V+ ++ +DP Sbjct: 285 TPSHLPLLRKGEPRVILAYDGDRAGIEAALKASKM---LTKADIEGGVVIFTQDQDPADM 341 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ ++L + +P V+ + ++ + P E+ + + + + L+ Sbjct: 342 VKKAQLQELQRLFAKPIPFVEFVLEKTVQKYDIKNPREKEKALFEGIDFLKTL-SPLLQE 400 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + L L K + Q + Sbjct: 401 EYKEYLAALLNILPSKIVL------------------------HPQQKKDVNYTMEVHDP 436 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 +E +++ T++ P + + + Q+ + + V+ ++ Sbjct: 437 KELSIIKTMLTKPHTVDIILDIIDASHFT--YHQEEFELTLQNRVDHP---------KIR 485 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E + + + + L + +++ + ++ L+ + KE I++ Sbjct: 486 SILLNEDILVFEEEHIRSELLVFLIKYYEQKIQEVVKGDFPFNQKSFLIRKYKENIKR 543 >gi|237736223|ref|ZP_04566704.1| DNA primase [Fusobacterium mortiferum ATCC 9817] gi|229421776|gb|EEO36823.1| DNA primase [Fusobacterium mortiferum ATCC 9817] Length = 601 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 151/635 (23%), Positives = 275/635 (43%), Gaps = 46/635 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I L+ + I ++G++V+ + N Y CPFH + TPSF + SK Sbjct: 1 MKYKSEDIDLLIDSLKIEEVVGEFVELKKSGAN-----YKGLCPFHPDTTPSFMVSPSKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ +SF S SFIE+V+ L+ +P+ ++ K+++ + Sbjct: 56 ICKCFVCGAGGNPISFYSQYKKISFIEAVEELSQKYAIPIKSLENNNLKQQESYEKYYEI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ A F+ +S+ + + + YL R ++ I+ LG+AP+ L ++L KG+ Sbjct: 116 MKEAHLFYKNSIFSNQGREALEYLSNRKLNPKVIKENGLGFAPNKWSELNDYLVSKGYES 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + +++ GL I ++ +YD FRNR+IFPI S +G VIAFGGRTL K + KY+NSP+T Sbjct: 176 KDLLKLGL-IKEGDNGNNYDTFRNRIIFPIFSIKGDVIAFGGRTLEKDKETPKYINSPDT 234 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKNLY + ++K ++ +L+EGYMDVLS G ++ LG Sbjct: 235 PIFKKGKNLYGLERS-GVIRKK----------NYAMLMEGYMDVLSAYLYGFDVALAPLG 283 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q LL K + I+L FD D PG A +A ++ G + + L +DP Sbjct: 284 TALTEEQGVLLKKYTSNIILSFDSDGPGQSATERAGLILKSL---GFNIRILQLEGAKDP 340 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ +GK +F K + S+ + D L+K ++ N + K ++ + Sbjct: 341 DEYLKQFGKESFLKCVKNSVEIFDFLFKYYLKDYDLNNMMSKQNFINRFKEFFQCVETEL 400 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + R + ++ G+ S+ Sbjct: 401 EKTLYLDRLSKEIDVDKNILKEILIDKNRKKSRKF----------EEDLVNINIGEKSEI 450 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E L ++ + + +K++ +L + + Q Sbjct: 451 INRVEKDTLFLILAKREYFKYFSDKNIKGSLT----KKVFQYLIQHKEIDREDSTLNLSQ 506 Query: 540 --RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-------- 589 L + + + + E ++Q + R Sbjct: 507 NLELTSEELEQWQLLICTLIENISNDKKIEELLTETFLSWFKQEIDSSYRKVKGMDLIEG 566 Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 LL+ + +++E ++++V + E ++ + Sbjct: 567 LLLTNKIKQLEIKLSRVNSFDEIKEIYDNFKEIIN 601 >gi|218885599|ref|YP_002434920.1| DNA primase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756553|gb|ACL07452.1| DNA primase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 599 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 159/622 (25%), Positives = 265/622 (42%), Gaps = 40/622 (6%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + + + + +YV+ + A CPFH E PSF N+ +GF+YCF Sbjct: 7 SVVQAIKARLNLVEVARRYVELRHTG----GPRWMAPCPFHQETKPSFSINEEEGFFYCF 62 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRLIE 122 C GD F + G F E+++ LA AGV L DPK+++++ + +R+ + Sbjct: 63 GCQASGDIFDFYGRIHGLEFRETLEALAEEAGVSLEDDWKPDPKVQREQSFKRQCLRMYD 122 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 VA + F +L + Y+ R + + F+LG++ +L + LR+ GF + Sbjct: 123 VAREHFRRNLTIPAGQECRDYIARRQLSPEIVNGFELGWSLREWSALADALRRGGFQQAD 182 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +AGLL D +DRFR R+IFPI++ GQVIAFGGR ++ + KY+NS ++ ++ Sbjct: 183 AAQAGLLSRNDAG-RMFDRFRGRMIFPIKNLAGQVIAFGGRIIADEDQAKYINSSDSAIY 241 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG++LY F A + +L EGYMDVL+L Q G LGTAL Sbjct: 242 KKGEHLYGLFQARRAM----------TQHKTAMLTEGYMDVLTLHQYGYNMACGVLGTAL 291 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q++ L + L FDGD+PG +AA +A ++ L G R VLL GED DS Sbjct: 292 TPEQVKRLGGFCSTVELLFDGDNPGRKAAMRACEM---LLTRGMRCKVVLLPDGEDIDSL 348 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLR 421 + G+ AFE L + +D + D L+ D Q L Sbjct: 349 LHDQGRDAFEALRKSAPDGLDFCIDTLRTLY--SPGDALEWSRNLLRQAGAGHADGQLLA 406 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + I L + SG A ++ + + P+ Sbjct: 407 SRFLSRIASGLGIREEAIREGLSGDFYKGAAAAAPGAREARNPAPQRQVDAVHTSGDAPA 466 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 R+ A++ L+ +P ++ A++ + ++LW+ + E PE++ L Sbjct: 467 KRDRAVMFFLVRYPHHFARLHEAGAELVLASPWARELWAKMARHGAE-----PEQLLPNL 521 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 ER K+ + R + + + +++ ++ R S Sbjct: 522 SERE-----KEFWIRCRTGDVPP--RDKELEELQDLLSGIESVTTRELGTSSMMA----A 570 Query: 602 IAQVTAKGEAEKTAILISILHE 623 + Q + L+ L E Sbjct: 571 LRQTATSTDPAAGIELLRALQE 592 >gi|254372871|ref|ZP_04988360.1| DNA primase [Francisella tularensis subsp. novicida GA99-3549] gi|151570598|gb|EDN36252.1| DNA primase [Francisella novicida GA99-3549] Length = 605 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 158/607 (26%), Positives = 278/607 (45%), Gaps = 33/607 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR RL+FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+SL Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + + + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + R ++ + Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472 Query: 479 KPSLREAALLL---------------TLINHPAILQE----QYQELADIRYDNNELQKLW 519 ++ + +L L IL+E Q + + I+ + Sbjct: 473 FVNIADFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVILIQLLTEDYPDYR 532 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + F ++ + + +LK+++ L + DV++ + Sbjct: 533 EYFFELLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRLKYLGSLPFRSDVQEMER 592 Query: 580 QALALYK 586 + L Sbjct: 593 KYLVAKL 599 >gi|182416399|ref|YP_001821465.1| DNA primase [Opitutus terrae PB90-1] gi|177843613|gb|ACB77865.1| DNA primase [Opitutus terrae PB90-1] Length = 632 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 147/648 (22%), Positives = 261/648 (40%), Gaps = 47/648 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++DL + I +++++ + V + CPFH+EKTPSFH + KGFY Sbjct: 4 IKPSCVRDLKLRINLADVVSRVVALRKAG----GTRLKGLCPFHNEKTPSFHVDPEKGFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 CF C GD ++F+ +F E+V+ L + + + ++ ++ +L Sbjct: 60 KCFGCGKAGDVITFVRETEQLNFTEAVEALGKRFSIVIEYEEGSGGPTREERSLRQELFD 119 Query: 120 LIEVATDFFHHSLK--NARDKRLHYYLDE-RGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L +VA + FH + K N + Y E R + + FK+G A S L L ++ Sbjct: 120 LHDVAAEHFHQAFKAANPAGEFFRTYWTEQRRFPAELADEFKIGGADASGSGLAAVLLKR 179 Query: 177 GFSEEKIIEAGLLIDGDNS----ATSYDRFRNRLIFPIRSSRGQVIAFGGRTL------S 226 +SEE + GL +++ RFR RL+ PIR +G+V+AF R Sbjct: 180 RYSEEALRRCGLFFIYEDAALTLGALRPRFRGRLMIPIRDHQGRVVAFTARQTKLTPEDD 239 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 KY+NSPET +F KG L+N A +LVEG +D L Sbjct: 240 PAREAKYVNSPETPIFTKGNLLFNLDRAR----------TNVGEGRPFVLVEGQLDALRC 289 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 G++ ++ GT++TE QL LL + P++ FD D G +AA + + + L G Sbjct: 290 WSVGLKTAIAPQGTSITESQLVLLRRYHPQVECFFDSDSAGQKAALRFLPMAL---KAGL 346 Query: 347 RVNFVLLSRGE--DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 V F+ L E DPD G A+E++ +L + N + ++++ Sbjct: 347 EVRFLTLVGAEKLDPDVLFLERGLPAYEEVRRSALSAMAFACHAVLPNPGAVSAEQKSRA 406 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + I + + R + L+ ++ + + A R S+ Sbjct: 407 AQSVFELIAAAESEVARSEFLAEASAHLRLSPAAMQKDYQTFAARQSRQAAARPANAESE 466 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL--QKLWSFL 522 + G + E LLL +++ + + +L + + +L + Sbjct: 467 AAAARPVEAGAAAP---TCERDLLLLCLHYEQLGKPLCGQLPH-DWIDPNHLPGRLLNRF 522 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 ++F + + + L L+ L + ++ D + +QAL Sbjct: 523 LAEFENDTWPGRDHLDVLLETDEERALVAGLIFDTPTSDGTY----KDLGDPLRKAEQAL 578 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +R R L Q EIE +A A ++ L+ ++ Q+ Q Sbjct: 579 TELRR-RALEPQLREIELALATGRADSNSDPI-SLLKTRSDIQRQLRQ 624 >gi|309791530|ref|ZP_07686032.1| DNA primase [Oscillochloris trichoides DG6] gi|308226455|gb|EFO80181.1| DNA primase [Oscillochloris trichoides DG6] Length = 658 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 147/659 (22%), Positives = 266/659 (40%), Gaps = 67/659 (10%) Query: 8 IKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCF 65 I ++ I +I V+ + + CPFH + +TP+F +YCF Sbjct: 4 IDEVRAKTDIVEVISASGVNLRKTGR-----SFMGFCPFHPNTRTPAFAVYPDSQSFYCF 58 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 CH G ++ G F +++++LAA AGV L + +++ +T L+ + A Sbjct: 59 GCHASGSVFDYVMRKQGLDFKDALEQLAARAGVRLEPKSDQERQEDTQRTRLLEINAAAA 118 Query: 126 DFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEEKI 183 +F++ L ++R Y+++RGI +E F+LGY+ D L + ++KGF + Sbjct: 119 KYFNYVLLSHSRGAPGRAYIEKRGISPEMVEAFQLGYSLDDWTHLFNYLTQKKGFDPADV 178 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 I AGL ID + YDRFR R++FPIR ++GQ++ FGGR L KYLNSPET LFH Sbjct: 179 ITAGLAID-HATYGPYDRFRARVVFPIRDAKGQIVGFGGRALENEVQPKYLNSPETPLFH 237 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K LY A ++ S +LVEGY+DV++ Q G +NVV+ LGTA+T Sbjct: 238 KSDLLYGLDLAREAIR----------SEDRAVLVEGYVDVITAHQHGFRNVVAPLGTAIT 287 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG------------------ 345 + Q+ LL +LS + + D D G +A K + ++ G Sbjct: 288 KNQVGLLKRLSHNVYMALDADSAGQKATVKGLSVLRESAEEGEGGRVVVTAQGAVRLESD 347 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + + + G DPD I+ + L+ ++P+++ + T + P + Sbjct: 348 VSLRIIRMPAGRDPDEVIKS-DPELWRHLLDSAVPVMEFYIEVFTAGLEMSEPQNQRLAL 406 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY-GRYWKKNARHRDQKGPSQ 464 L + D + Y + + G GR + R + S+ Sbjct: 407 EKLLPLLAE-LDGVQQRIYISRLEQVVGIRADLIADMLRGGIGRIEPERRRPGVPRSESR 465 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD---IRYDN--------- 512 + + + + E L++ + + ++ + L + R+ + Sbjct: 466 PPVPAPVAPSMPANTARNMEQHLIVLALRYSTVVPAAIEALLEQGLERFPHLRGLLGGGL 525 Query: 513 ------NELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWS 564 Q++W+ + + Q+ E+ + E + L +Q + Sbjct: 526 EDLLEDPANQQIWATFSTLPITQRPANEAELLIWAEHLAQPLREHITSLLKQAQRKPQDF 585 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 R + ++ R L R + + + AE+ ++ Sbjct: 586 RYRREAEDCAR------IIRQEQARRLHRMMLQRIASMNAEEVEYSAERQLTALAQFIA 638 >gi|134287909|ref|YP_001110073.1| DNA primase [Burkholderia vietnamiensis G4] gi|134132559|gb|ABO60185.1| DNA primase [Burkholderia vietnamiensis G4] Length = 569 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 140/494 (28%), Positives = 217/494 (43%), Gaps = 33/494 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + F+ ++ + ++GQ+V + D+ CPFH EK+PSF + K F Sbjct: 6 RFADAFLDEVRERTDLVEVVGQHVKLKKGGK-----DFVGLCPFHTEKSPSFTVSPVKQF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTDLI 118 Y+CF C G+ SFL+ G F+ +VQ LA AG+ +P E + Sbjct: 61 YHCFGCGAHGNVFSFLTEYSGYDFVSAVQELALRAGLSMPERSAPTAHALAAEARTARIG 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ A + +L+N Y+ RG+ + F LGYA D + G Sbjct: 121 DALQRAQRTYFRNLRNCPGA--IGYMKGRGLTKATVVQFGLGYADDGHIHDWD-----GV 173 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + + AGL+ D + ++RFR RL+FPI + R ++I FGGR L KYLNSPE Sbjct: 174 AIDVLECAGLVAVDDETGVYHERFRRRLMFPIWNERSELIGFGGRVL-DDRQPKYLNSPE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KG+ LY A ++ ++VEGYMDV+ L Q G V+SL Sbjct: 233 TEVFRKGEELYGLNFAKQSIR----------QGRLAVVVEGYMDVVMLHQHGDARAVASL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LTE QLR L++++ +V CFDGD G AA +A + + G +F+ L D Sbjct: 283 GTSLTEEQLRRLYRMADHVVFCFDGDKAGRAAADRAARVAIGITPDGKTASFLTLPGDHD 342 Query: 359 PDSFIRCYGKTAFEKLIV-ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PDSF+R +G ++ + E+ PL L + R + RA + I Sbjct: 343 PDSFVREHGIDSWRAFVECEATPLSRKLIEMLLRGRDLEIAEHRAAFARDGIETLAVIGH 402 Query: 418 -QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R + +R+ Q+ R ++ + +Q L+ Sbjct: 403 APIFRAALQSEL-ERIAQM--ALSVPEVADARPNRRADAATHIRVQTQS--DVGLLPASN 457 Query: 477 SKKPSLREAALLLT 490 R A LL Sbjct: 458 RVAFYRRYALLLAL 471 >gi|256841931|ref|ZP_05547436.1| predicted protein [Parabacteroides sp. D13] gi|256736247|gb|EEU49576.1| predicted protein [Parabacteroides sp. D13] Length = 1322 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 138/482 (28%), Positives = 217/482 (45%), Gaps = 25/482 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I +++ I ++IG YV + N Y CPFH +K S + +K + Sbjct: 2 IPQDVIDNIINTANIVDVIGDYVKLKKAGVN-----YKGVCPFHGDKDASLVVSPAKNIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF C G+ ++F+ G SF E+V+ +A+ + +P KK K + L Sbjct: 57 KCFGCGKGGNVITFVKEHEGISFFEAVKLVASKYNITVPERELTDDERKKTKEREALQIC 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A + F LK RGI + + + GY+ +L E QKG+ Sbjct: 117 LTFAQETFTAFLKKKEAAEYLET---RGITPNILSKYGAGYSSSMFTALTELGSQKGYDM 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +AGL I + +DRF NR+ FP S G VI F GR+L K KYLNSPET Sbjct: 174 AAMEKAGL-ITRKENGKIFDRFVNRITFPFYSLSGLVIGFTGRSLEKDTQCKYLNSPETP 232 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKGK L+ + A + KS LVEG DVLS Q+G N V GT Sbjct: 233 LFHKGKTLFGIYQARQEISKS----------DKCYLVEGQFDVLSFVQSGYPNTVCGSGT 282 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT Q+R++ K + + +DGD G++A+ + +D++L G V VLL GEDPD Sbjct: 283 ALTLDQVRIIKKFTRNVTAVYDGDAAGMKASVRNMDIMLAE---GMNVRAVLLPEGEDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SF R G K + + + E+ + + E+ + I+ + D+ Sbjct: 340 SFARKMGTEKLAKFLKKQETDFISFIYKAFESEMDDPI-RKTEVLRIIAQSISVVPDKLQ 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y ++ +R + + KK+ + + + ++ + +K+ Sbjct: 399 RQAYIVSLAERFNADGELITNLVAELQAVGKKSVPAQPTQPGLTGVEEAEELVKTGNKQV 458 Query: 481 SL 482 +L Sbjct: 459 TL 460 >gi|218262659|ref|ZP_03477026.1| hypothetical protein PRABACTJOHN_02705 [Parabacteroides johnsonii DSM 18315] gi|218223256|gb|EEC95906.1| hypothetical protein PRABACTJOHN_02705 [Parabacteroides johnsonii DSM 18315] Length = 708 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 139/492 (28%), Positives = 230/492 (46%), Gaps = 28/492 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + +K Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPAKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + +K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYYDALRYLAKKYNIEIQERELSEREKQVRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L ++ + Y ERG I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAQKYFTTQLYEHQEGKAAGLRYFAERGFREDTIRKFQLGYSLDQRDALYKAATKSGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 + + + GL+I ++ DRFR R+IFP+ S G+V+AFGGR L K E KY+NSP Sbjct: 177 KKVFLEKTGLVI-TYDNGGVNDRFRGRVIFPVHSLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K+ R LVEGY DV+S+ QAGV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIVKADR----------CFLVEGYTDVISMHQAGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + IDL L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTSNITVLYDGDAAGIKAALRGIDL---LLEDGMNVKVVLLPDGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ R + + P +R+ L + + I D Sbjct: 343 DPDSFARKHNASQFAEFIRQNETDFIRFKTRLLLDDAGTDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R Y + ++ L + G + P + Sbjct: 403 NIARSLYIRECSAMMEIDEMLLLNEVNKIRLNKGERQTNTSPSSIPATPVNLPEYPDIPG 462 Query: 474 GKLSKKPSLREA 485 + + +L E Sbjct: 463 YQPYPEEALTEQ 474 >gi|206890478|ref|YP_002248857.1| DNA primase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742416|gb|ACI21473.1| DNA primase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 566 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 165/628 (26%), Positives = 281/628 (44%), Gaps = 79/628 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + ++++ + I LI +Y+D + N Y + CPFH EKTPSF N SK ++C Sbjct: 4 QKVLEEIKHRLDIVELISEYIDLKKTGQN-----YKSLCPFHSEKTPSFFVNPSKQIFHC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD ++F+ SF+E++ LA G+ V I K + L + E A Sbjct: 59 FGCGKGGDIVTFVMEYEKVSFLEAISILAQKTGLEFESVKKSISHISKER--LYAIYESA 116 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 T ++ L N+ + + YL +RGI+ IE+F++GYAP + SL L++K F + I Sbjct: 117 TRYYMEQLNNSENAKQ--YLIKRGINQKTIEIFQIGYAPAEKNSLYNFLKEKNFDDILIN 174 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPETILFH 243 + L+ SYD FRNR+I PI G+VI FGGR + E KY+NSP+T +F Sbjct: 175 SSRLVS------NSYDFFRNRIIIPIHDLTGRVIGFGGRLIDSSSELPKYINSPDTPIFK 228 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG+NL+ + + +++ ++I+VEGYMDV+ Q G +NVV+ LGTALT Sbjct: 229 KGENLFGLWHSKQHIR----------EKGYVIVVEGYMDVILCHQYGFKNVVAPLGTALT 278 Query: 304 EYQLR-------LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + QL L K + +I+L FDGD+ G+ AA +++ L G VLL Sbjct: 279 QEQLEKTKRILNNLKKFTNKILLIFDGDEAGIHAAQRSL---LPLFYGGFIAKIVLLPEK 335 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDP SF++ YG AF+ I ++L +D++ K +N + E N ++++K Sbjct: 336 EDPASFLQKYGDKAFKNYISKALSPIDLIIKTYPKN-------KLNEGIHSFLNSLSYLK 388 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D R + + ++ + E + K Sbjct: 389 DLIYRDELLKELSEKTGINEKTLRDELKQIVHNKNFKKEKINIKN--------------- 433 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 S E LL +++P + Q++ ++ ++ ++S + + + F + Sbjct: 434 -YLVSKEEEILLRIALSYPEKINYILQKINIEDFEVTIIRNIFSKI-EELQKHGQFSLNK 491 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + E + +L T+E + + Q L + + K+ Sbjct: 492 LLNIIDEEE-KTFISKL----------IMTSEIDEELIMQNMNDCLKSLAIKSIDKKIKK 540 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEV 624 + G+ + LI + + Sbjct: 541 --------IAKSGDEKTLQELIRMKKNI 560 >gi|254374326|ref|ZP_04989808.1| DNA primase [Francisella novicida GA99-3548] gi|151572046|gb|EDN37700.1| DNA primase [Francisella novicida GA99-3548] Length = 605 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 155/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGSVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+SL Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + + + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + R ++ + Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 ++ + +L N I + L L L + + I Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520 Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L + E +L + + ++ + RL Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575 >gi|208779305|ref|ZP_03246651.1| anticodon nuclease activator family protein [Francisella novicida FTG] gi|208745105|gb|EDZ91403.1| anticodon nuclease activator family protein [Francisella novicida FTG] Length = 605 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 156/595 (26%), Positives = 268/595 (45%), Gaps = 29/595 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNSFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKLEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR RL+FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+SL Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPNKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + + + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFHTALGNSLAVAEFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + R ++ + Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRKQTTVNVNRQQNIQQKKLAKNLLLEELVLAEL 472 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 ++ + +L N I + L L L + + I Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520 Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L + E +L + + ++ + RL Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575 >gi|332881873|ref|ZP_08449516.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680217|gb|EGJ53171.1| DNA primase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 710 Score = 301 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 156/691 (22%), Positives = 278/691 (40%), Gaps = 82/691 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 R + ++ I +++ +V + N Y CPFHD++TPSF + SKG Sbjct: 2 IDRATVDRIMDAAQIVDVVSDFVTLRKAGVN-----YKGLCPFHDDRTPSFVVSPSKGLC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G+ + F+ S+ ++++ LA + + + ++ + + + + Sbjct: 57 KCFACGKGGNAVHFIMEHEQLSYPDALRYLARKYNIEIKERELTEEEKQAQDERESMFVV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A FF L N D R Y R I+ F+LGY+P R + + KG+ Sbjct: 117 NEWACQFFQDQLYNTVDGRAIGMTYFRSRSFRDDIIKKFQLGYSPSQRDACAREAKAKGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLN 235 EE ++ GL DN DRF R+IFP+ + G+V+AFGGR L KG +VKY N Sbjct: 177 KEEFLLSTGLCYKRDNG-QLQDRFFGRVIFPVHTLSGKVVAFGGRVLDAATKGVNVKYQN 235 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ ++ K K LY F A + K LVEGY DV+S+ Q GV+NVV Sbjct: 236 SPESAIYSKKKELYGLFLAKQAIVK----------HDLCFLVEGYTDVISMHQMGVENVV 285 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 SS GTALT Q+R++ + + I + +DGD G++A+ + ID+ L G V +LL Sbjct: 286 SSSGTALTTEQIRMIHRFTENITVLYDGDAAGIKASERGIDM---LLAEGMNVKLLLLPD 342 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G+DPDSF R + T ++ + E + + P + + L + + I+ I Sbjct: 343 GDDPDSFARKHNATEYQAYLNEHQVDFIKYKTDLLLHEAQGDPIKLSRLISSIVHTISVI 402 Query: 416 KDQKLRYYYSQAIRDRLQQLFQ----------KYITEHSGYGRYWKKNARHRDQKGPSQR 465 D+ R Y++ L + E R ++N ++ Q Sbjct: 403 PDEITRSVYTRETATMLNMEERMLVAAISKEMAQAKEEKQKQRENERNRKNAQLPSSGQA 462 Query: 466 LMQSSLVKGKLSKKPSLREAALLLT---------------LINHPAILQEQYQE------ 504 L + E + N+PAI + Sbjct: 463 LSSLNQDSLPPPAPFPPSEEGIPPIPDDGTPTDTPVPNTSSGNNPAITENVSTLSYIPGK 522 Query: 505 -LADIRYDNNEL----------QKLWSFLFSDFVEQKYFLPEEIHQR------------L 541 + + EL +K+ + ++ E+ E L Sbjct: 523 GAEAMLFYRKELLLVQVLIRYGEKIICYAENEQGEEVPVSVAEFIDYALQEDGLLFHNAL 582 Query: 542 CERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 +R E + + ++ + + +I + ++ ++ E+ Sbjct: 583 HKRILQEAIDHIHEKDFSSERYFLNHPDNHISMLAFELSGDKYQLSKYHSKHQKIASDEE 642 Query: 601 QIAQVTAKGEAEKTAILI-SILHEVHIQIHQ 630 ++ ++ ++ ++ L ++ +++ Q Sbjct: 643 RLTELVPHLISDFKLAIVDEELKQILLKLRQ 673 >gi|313886698|ref|ZP_07820408.1| DNA primase [Porphyromonas asaccharolytica PR426713P-I] gi|332300029|ref|YP_004441950.1| DNA primase [Porphyromonas asaccharolytica DSM 20707] gi|312923860|gb|EFR34659.1| DNA primase [Porphyromonas asaccharolytica PR426713P-I] gi|332177092|gb|AEE12782.1| DNA primase [Porphyromonas asaccharolytica DSM 20707] Length = 676 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 153/696 (21%), Positives = 285/696 (40%), Gaps = 82/696 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I +++ +V R+ + + CPFH ++ PSF SK Sbjct: 2 IDEQTKQLIIDTARIEDVVSDFVQLRRKGSG-----FVGLCPFHKDRHPSFIVTPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G +SF+ + CSF+E+++ LA +P+P + ++++ + L Sbjct: 57 KCFACGAGGTPISFIMKIQNCSFVEALRYLAQKYNIPMPEREMTEEEQQRKNEREALYLA 116 Query: 121 IEVATDFFHHSLKNARDK--RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 EVA FF L ++ + Y +RG+ S AI+ F LGY+P R +L +++ + G+ Sbjct: 117 NEVAAKFFTEQLLSSEEGLDIALPYFTQRGVRSEAIQAFGLGYSPSDRRALAKYVEEHGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 E + GLL S DR+ R+IFPI + G+V+ FGGRT+ K + KY+NSP Sbjct: 177 DMESFVATGLLYAPSEGRPSGDRYHERVIFPIYNVGGRVVGFGGRTMRKADKIAKYINSP 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+I++ K + LY + A + + R I+VEGY+DV+++ Q G++NVV++ Sbjct: 237 ESIIYDKSRELYGLYQAKQAIGRLDRS----------IIVEGYLDVIAMHQVGIENVVAT 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALTE Q++LL + S +++ FDGD+ G++AA ++ID+ L G ++ ++L GE Sbjct: 287 SGTALTESQIQLLRRFSRNVLVLFDGDEAGVKAALRSIDM---LLAEGMQIKLLVLPDGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD F+ +T E+ + + + P + +L + I I D Sbjct: 344 DPDEFVAKRSRTEVEEYFAAHEQDFLTFKSQLYAPQMASDPQLKTQLMRDILQSIATIPD 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R Y Q + + + + ++ + ++S Sbjct: 404 SLERIVYIQQMSQMYGVAEDLLLQQIKQERFSRGRVYQYAPPAAATPEERAPEETPQEVS 463 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ----------KLWSFLFSDFV 527 + L + ++ + I + E + +F++ + Sbjct: 464 PLDAPMSNEALDLV----RLVVRYGERKLKISVQDEEAGEGAEPMVIQVAVANFVYQELK 519 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLD--------------------------------- 554 + + + +R+ +L++L Sbjct: 520 QDDIVIEHPLVKRILNDSNKMMLEELSDSEDGESKHRCGSFLCNSEVPQVAALAVDLYAT 579 Query: 555 --RQVRDAGLWSATTEANIVDVRQGYQQA-----LALYKRFRLLS--RQKEEIEKQIAQV 605 R R A + + V + + L YK +Q + + + Q Sbjct: 580 PYRLSRKAREELQMPDDDDEKVPDEWVRDMTFKVLYTYKLAYAEEHCQQISQQIQALQQE 639 Query: 606 TAKGEAEKTAILISIL---HEVHIQIHQIESQEAMI 638 + + E L+ L E+ Q Q +I Sbjct: 640 HPEADYESYQPLLQELSTWQEIRKAFAQFSGQRVVI 675 >gi|225848842|ref|YP_002729006.1| DNA primase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644203|gb|ACN99253.1| DNA primase [Sulfurihydrogenibium azorense Az-Fu1] Length = 559 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 148/598 (24%), Positives = 278/598 (46%), Gaps = 42/598 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M D ++++ + ++I Y++ R+ + Y A CPFH+EKTPSF + +K Sbjct: 1 MAISPDTVEEVNRVANVYDVISDYLNLKRQGSV-----YVALCPFHNEKTPSFVVSPTKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C + G+ + F+ S+ ++V +LA +P+ +D +KEK+ L Sbjct: 56 IFKCFGCGISGNAIKFVMEYEKISYFDAVVKLAQKYNIPIKYLDS---EKEKLNKGLYLT 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + T+F+ +LK + + YL RGI S IE F+LGY+P+ L++++++K Sbjct: 113 TRIITEFYKENLKKS--QVCKDYLKNRGILSRTIEEFELGYSPEDNSILQKYIQEKNVPL 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + + GL+ D+ D+F RLIFPI+ +G ++AFGGR+L KYLNSPET+ Sbjct: 171 EDLEKIGLITKTDSLFK--DKFSGRLIFPIKDVKGNIVAFGGRSLDNTRQPKYLNSPETV 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG LY + +L +L+ +++VEGYMD++SL Q G++NVV++LGT Sbjct: 229 IYKKGNTLYGIYQSLEHLK----------EKQSVVIVEGYMDLISLYQIGIKNVVATLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T+ Q +LL K V+ FD D+ G +AA I+ L G V + +DPD Sbjct: 279 AFTKNQAKLLKKYVKEAVVMFDSDEAGKKAA---IEAAKILLSEGITVRYAYYKEAKDPD 335 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE---RAELEIHLKNCINHIKD 417 + G + +++I S ++ L +R + + + + ++ + +I+D Sbjct: 336 ELSK-QGLSKVKQVIENSKDIIIFLLERLKSIQDSDIKTQLKSYQTIYDYITKILAYIED 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + + + F + K+ + + Sbjct: 395 PSLRNSYIEIVAKYTGRSFANVELDIEKVRILTKRERGSFNYNYTDDEST-------SIK 447 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K +++E +L ++ +P LQ+ + DI + L + + +E+ Sbjct: 448 PKLNMKEEIVLKYILENPDFLQKY--DFYDIISVSENLG----YYVQLINSGNTQVIQEL 501 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 Q L + + + + + D + ++ + + ++ + L R++ Sbjct: 502 SQILNQHNISATEETVLKILEDFRQEWIKKQKSLAISNLSERDFIDIFNEIKTLKRRR 559 >gi|317056181|ref|YP_004104648.1| DNA primase [Ruminococcus albus 7] gi|315448450|gb|ADU22014.1| DNA primase [Ruminococcus albus 7] Length = 598 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 131/629 (20%), Positives = 244/629 (38%), Gaps = 38/629 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++F++ L PI+ ++ + V+ Y CPFHD+ T S S+GF+ Sbjct: 2 DQEFLEKLKYENPINEVMRENGVELKTSGRG-----YMCKCPFHDDSTASCSVVPSQGFF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD ++F+ F+++V LA AG+ +P +K K + + + + Sbjct: 57 HCFGCGVSGDVVTFIRKYRNLGFMDAVNFLAQRAGMTVPTWQGADDKSYKRRMRIYEMNK 116 Query: 123 VATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A FF LK R Y + R + + I+ + +G+AP S +L+ ++ G+SE+ Sbjct: 117 CAARFFRDQLKTQDGLRCLNYLVHTRKLSADVIKKYGMGFAPKSFTALKSYMLSCGYSED 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL----NSP 237 +++ A LL S +YD F +R +FP G ++ FGGRTL + S Sbjct: 177 ELVSASLLGRSQTSGRTYDFFMDRAMFPFIDVTGNIVGFGGRTLGDDKRKYLNTGDTTSE 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E + K L + A S ++L EG +DV+SL Q G N V+S Sbjct: 237 EFRRTNDEKKLDGYSKARFVFS-LNYAKDVSVKSRELLLCEGNLDVISLYQHGFTNAVAS 295 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT Q++++ + ++V+C+D DDPG +AA +A+ + G + + + + Sbjct: 296 CGTALTPEQVKVMKNYADKVVICYDADDPGQKAALRAVGM---LRSGGLGSSVIHMEGAK 352 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I +G+ F L+ + D + D++ I D Sbjct: 353 DPDEYINKFGEDHFRYLLNNAADGFDFELGYYSRGLDLEKRDDKIRFLKMAYTSIAGEPD 412 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 R + + ++ F R Q+ ++ + + Sbjct: 413 STARDTMERQLSEQYNVSFDVVRASVDDIMMREMDTQRRAKQREEVRKTIATEEESAANK 472 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ + + QE Q ++ + + +K+ + + I Sbjct: 473 AVYC--ERGLIYYICTNADSAQEIGQRISPEEFTDELNRKILLEISGRIALGDIVSLDVI 530 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L E L + + +V Q Y ++ Y + ++ Sbjct: 531 CETLTEEEADRLKRSFTKYAGLNVTR---------EVAQQYIDSIKEYNKKNAPQQE--- 578 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626 + + ++ L Sbjct: 579 --------DGLTDKD-YLRMMEELRRKKR 598 >gi|293604555|ref|ZP_06686960.1| DNA primase [Achromobacter piechaudii ATCC 43553] gi|292817136|gb|EFF76212.1| DNA primase [Achromobacter piechaudii ATCC 43553] Length = 688 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 140/454 (30%), Positives = 230/454 (50%), Gaps = 27/454 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD------PKIEKKEKIQTD 116 +CF C G ++FL G SF E+V+ LAA AG+ +P + + ++ ++ Sbjct: 57 HCFGCGAHGSAITFLMEHTGTSFPEAVRTLAASAGMTVPEENRSPRQQQESARRRAEESR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + YL +RG+ F LG++ R+ L + Sbjct: 117 HTQVLDAAQAHYLKQLRASPAA--IRYLKQRGLTGEIAAHFGLGWSGTDRHGLSQVF--P 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++E+GL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPTLVESGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG LY + A ++ +I+VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTATTPDHVKKLLRASDKVIFSFDGDGAGRRAAWRALQACLPVLRDDIAIRFLFLPTE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + +++ L L + N + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRACLSDAVALSRFLLDELASRHNMNEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 + LR + + +Q ++ + Sbjct: 401 ECALRVQIEREMAKLVQLTPEEMSQILAQQPAKP 434 >gi|169796976|ref|YP_001714769.1| DNA primase [Acinetobacter baumannii AYE] gi|213156618|ref|YP_002318280.1| DNA primase [Acinetobacter baumannii AB0057] gi|215484437|ref|YP_002326670.1| DNA primase [Acinetobacter baumannii AB307-0294] gi|301346837|ref|ZP_07227578.1| DNA primase [Acinetobacter baumannii AB056] gi|301511993|ref|ZP_07237230.1| DNA primase [Acinetobacter baumannii AB058] gi|301594461|ref|ZP_07239469.1| DNA primase [Acinetobacter baumannii AB059] gi|332855564|ref|ZP_08435938.1| DNA primase [Acinetobacter baumannii 6013150] gi|332868377|ref|ZP_08438123.1| DNA primase [Acinetobacter baumannii 6013113] gi|169149903|emb|CAM87796.1| DNA primase [Acinetobacter baumannii AYE] gi|213055778|gb|ACJ40680.1| DNA primase [Acinetobacter baumannii AB0057] gi|213986966|gb|ACJ57265.1| DNA primase [Acinetobacter baumannii AB307-0294] gi|332727388|gb|EGJ58821.1| DNA primase [Acinetobacter baumannii 6013150] gi|332733436|gb|EGJ64617.1| DNA primase [Acinetobacter baumannii 6013113] Length = 621 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 163/681 (23%), Positives = 276/681 (40%), Gaps = 119/681 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L+ GV LP + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSGNTGVELPKDNTDNKKLSYTRQVTKPS 115 Query: 116 -----------------------------------------------DLIRLIEVATDFF 128 +L L+E F+ Sbjct: 116 TPPKTVAEPTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDGPVQEGNLYDLLENVAQFY 175 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L ++ Y +RG+ I+ ++LGYAP+ HL + + + ++ Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + ++ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L++HP L ++ L + L K+ + L F E +E+ Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ ++ + + +V + AL + R L ++ + + Sbjct: 548 TYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 600 -----ESRNLRQQLNELTKQI 615 >gi|154494837|ref|ZP_02033842.1| hypothetical protein PARMER_03879 [Parabacteroides merdae ATCC 43184] gi|154085387|gb|EDN84432.1| hypothetical protein PARMER_03879 [Parabacteroides merdae ATCC 43184] Length = 708 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 138/492 (28%), Positives = 229/492 (46%), Gaps = 28/492 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + +K Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPAKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + +K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYYDALRFLAKKYNIEIQERELSEREKQVRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L ++ + Y ERG I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAQKYFTTQLYEHQEGKAAGLRYFAERGFREDTIRKFQLGYSLDQRDALYKAATKSGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGGVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K+ R LVEGY DV+S+ QAGV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIVKADR----------CFLVEGYTDVISMHQAGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + IDL L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTSNITVLYDGDAAGIKAALRGIDL---LLEDGMNVKVVLLPDGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ R + + P +R+ L + + I D Sbjct: 343 DPDSFARKHNASQFAEFIRQNETDFIRFKTRLLLDDAGTDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQ----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R Y + ++ L + P + Sbjct: 403 NIARSLYIRECSTMMEIDEMLLLNEVNKIRLNKEERQANTPSSPIPATPINIPEYPDIPG 462 Query: 474 GKLSKKPSLREA 485 + + +L E Sbjct: 463 YQPYPEETLAEQ 474 >gi|291277102|ref|YP_003516874.1| DNA primase [Helicobacter mustelae 12198] gi|290964296|emb|CBG40146.1| DNA primase [Helicobacter mustelae 12198] Length = 572 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 148/598 (24%), Positives = 267/598 (44%), Gaps = 38/598 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I +++G Y++ R +N + ACCPFH EKTPSF + SK Y Sbjct: 2 IKASSIEALKQQADIIDILGNYIELKRAGSN-----FSACCPFHQEKTPSFIISPSKNLY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +C+ C V GD + F+ FIE+V+++A ++ L + K+ + + E Sbjct: 57 HCYGCGVGGDVIKFVMEYEKIPFIEAVEKIAELSHFTLEYETSHQKPKQHTEE--YEIFE 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 FF +L + YL RGI + ++ F LGY +S ++ + + + Sbjct: 115 RFIHFFGDTLAKEPG--ILAYLQRRGISAQSMRDFSLGYCGNSFEVVKFCDQLRLEKKNL 172 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + GL I G + Y RF R+IFPI S G + FGGRTL + + KY+NSP++ LF Sbjct: 173 V---GLGILGQSDGRYYARFAERIIFPIHSPAGNPVGFGGRTL-RDHAAKYINSPQSQLF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY + A ++ + II+ EGY+DV+ L QAG + V++LGTAL Sbjct: 229 NKSKLLYGYHIAKEFIYR----------ERTIIITEGYLDVIMLHQAGFRTAVATLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L LL K P+I+L +DGD G+RAAY+A ++ G V+ G DP Sbjct: 279 TQEHLPLLNKGEPKILLGYDGDSAGIRAAYRASFMLANLKKEG---GVVIFQNGMDPADM 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + ++L +P ++ + ++ P ++ + + ++ + L+ Sbjct: 336 VQKNQISDLKELFSHPMPFIEFVLRQIPLQFDLTNPLQKEQALKQQLDFLHTL-SPLLQE 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I + LQ T+ + ++N P + S Sbjct: 395 EYKALISNLLQISPSLIPTKPT----KHQENFPSSRSSKPGYSPTLYGNGGLGFLHQESQ 450 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL- 541 E ++ ++ P++L Q + + + ++ + L + ++ + I+ +L Sbjct: 451 LEELIIRYILETPSLLDLALQYIDAEIFQHQ--KQAFCALLAKNLDHPSLIGIRINPKLI 508 Query: 542 -CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 GF L+ L + + L S E + ++ ++ + +L ++ E+ Sbjct: 509 TTPHGFRNELRLLILRYNTSLLNSIQKERALSFEQKSFR---IRKIKNHILKLKQGEL 563 >gi|293609058|ref|ZP_06691361.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829631|gb|EFF87993.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 622 Score = 299 bits (766), Expect = 7e-79, Method: Composition-based stats. Identities = 163/684 (23%), Positives = 275/684 (40%), Gaps = 124/684 (18%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FIE ++ L++ G+ LP + + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIEVMKELSSSTGIELPKDNTENKKLSYTRQVTKPP 115 Query: 116 ------------------------------------------------DLIRLIEVATDF 127 +L L+E F Sbjct: 116 VTKTNTAEPVTSQQPSDESYNTLEPVFFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQF 175 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 + L ++ Y +RG+ + I+ ++LGYAP+ HL + + ++ Sbjct: 176 YEQQL--PHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 LI ++ +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY + SS ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q Sbjct: 398 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQ 457 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + R++L R S S + K E Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + L++HP + LA I+ + L K+ + + + E + Sbjct: 491 AIAILMHHPFLYIHFEGLLAYIQ-QDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548 Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 + + ++ L A +V + +L + R L ++ + I Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAKEYSLSLQERYLRQKLKSPISLI-- 600 Query: 605 VTAKGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 601 --------ESRNLRQQLNELTKQI 616 >gi|21672346|ref|NP_660413.1| DNA primase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|22654277|sp|P32000|PRIM_BUCAP RecName: Full=DNA primase gi|21622949|gb|AAM67624.1| DNA primase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 579 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 139/599 (23%), Positives = 268/599 (44%), Gaps = 47/599 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI +LL I LI + + N Y CPFH++KTPSF + K F Sbjct: 4 KIPKYFINELLFRTNIVELIETRIKLKKNGKN-----YQTHCPFHNDKTPSFTVSYEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIR 119 YYCF C G+ + FL +F+ES++ LA I + +P +K+ + L Sbjct: 59 YYCFGCSAHGNAIDFLINYDNLNFVESIEELATIHSIEIPFDKKGTIEKKIYLKKQKLYF 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L++ + + ++ YL ERGI+ + I+ F +G++ + + K Sbjct: 119 LMDKMSKLYQKNIIFTNSANK--YLTERGINKNMIDFFCIGFSSNKWDLFSKQFNIKKDF 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+ ++ + I + + YD F+ R++FPI G++I+FGGR+++ KYLNS E Sbjct: 177 EKDLLHYKI-ISTNKNGYIYDTFQGRIVFPIHDQHGRIISFGGRSITNNILPKYLNSHEN 235 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKGK +Y + K ++++VEGY+DV+ L Q ++ VVSSLG Sbjct: 236 DIFHKGKQIYGLYQVKKKHSKP----------KYLLVVEGYIDVIMLTQYNIEYVVSSLG 285 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T++T+ +++L++ + ++ C+DGDD G A+++ + + L ++ + F++L EDP Sbjct: 286 TSITKEHIQILFRHTNTVIYCYDGDDAGRNASWRTLKIALPYISDKKNIKFIILPNNEDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ I+ G+ F+ I +L + +K +N ++ D++ L + IN I Sbjct: 346 DTIIKKEGQKKFQLRIDNALTMSKFFFKNILKNVDLSSDDDKFHLSVRALPLINCISSDT 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R Y Q + + + + KK+ + + + P Sbjct: 406 IRIYLRQILARTIGIVDDYQFEKFLYEKERKKKSLQFQIKHTPM---------------- 449 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537 L+ LI +P + + + +++N ++Q L + + + F ++ Sbjct: 450 -----RTLIGLLIQNPNLARLVP---STKKFENEKIQGLPIFLEILKTCSDNPNFNTGQL 501 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +LK L + + + ++ Y + L + + + + Sbjct: 502 LEFYRYSKIINILKILSKWDHMI-IKEKIQNMFLDLLKNTYSKILEKRQEKLIAKERIQ 559 >gi|332678202|gb|AEE87331.1| DNA primase [Francisella cf. novicida Fx1] Length = 605 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 156/595 (26%), Positives = 270/595 (45%), Gaps = 29/595 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +FIK+L+ I +++ +YV+ + N Y CCPFH+EKTPSF N K F Sbjct: 4 KVSNNFIKELVATADIVDVVSRYVNLKKTGKN-----YKGCCPFHNEKTPSFFVNPEKNF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C GD L+F+ + FI++V+ LA I G P+ + +KE++ I Sbjct: 59 YHCFGCQASGDALTFVKNINKFEFIDAVKNLAEIVGKPVEYENYSQEDIQKEQLYNKCIS 118 Query: 120 LIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ +L N+ K + YL +RGIDS + F +GY+ + ++ E + Sbjct: 119 FLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYSSEGWNNITELAKSINI 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 EE +++ GL I D YDRFR RL+FPIR+ +G VIA+GGR + VKY+NSPE Sbjct: 179 PEEILVDTGLAIKNDKG-NLYDRFRGRLMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K LY + +K D+ S +++VEGYMDV+SL Q G V++L Sbjct: 238 TLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMDVVSLAQHGFYAAVATL 292 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + ++L++ + ++LCFDGD+ G +AA + I ++L L ++ + L +D Sbjct: 293 GTAFSPNHAKILFRETSSVILCFDGDEAGKKAALRTIKILLPMLDGNKKLKILTLPDKDD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD +I+ YG F + SL + + + + + + + +AE+ +LKN + ++D Sbjct: 353 PDDYIKKYGLERFHTALDNSLAVAEFVIDNLIQGKDLSKAEAKAEVLENLKNFLADVEDN 412 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I D++ +++ + R ++ + Sbjct: 413 IYSESITATIADKIGIKVEQFKNLLKIRRQTTVNINRQQNIQQKKLAKNLLLEELVLAEL 472 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 ++ + +L N I + L L L + + I Sbjct: 473 FVNIADFRILQH-TNDFEIFA-----------TSKNLDILAKSLKILKEDSSNQIEAVIL 520 Query: 539 QRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L + E +L + + ++ + RL Sbjct: 521 IQLLAEDYPDYREYFFELLSYGIRNTQKKYAEDKYQEQMLVMLKRVENSSVKKRL 575 >gi|34558196|ref|NP_908011.1| DNA primase [Wolinella succinogenes DSM 1740] gi|34483915|emb|CAE10911.1| DNA PRIMASE PROTEIN [Wolinella succinogenes] Length = 554 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 150/590 (25%), Positives = 248/590 (42%), Gaps = 56/590 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ L I I++++G Y++ + + A CPFH EKTPS + KGFY Sbjct: 2 ITEESIERLKQMIDIADVVGSYLELTKSGA-----SFKALCPFHGEKTPSLIIHPQKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ ++ E+++++A + V L D + L+E Sbjct: 57 HCFGCGASGDAIKFVMEYEKLTYPEAIEKIAGLYNVSLSYTDVASNAPKS------SLLE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + F+ L++ + YL R + ++ IE F++GYAP S +LR G + Sbjct: 111 KLSSFYQKRLESEPNA--LEYLKSRSVHTNMIERFEIGYAPASSETLRFLE---GGFFSQ 165 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L + + Y RF +RL FPI + +++ FGGRT+ KY+NSP+T LF Sbjct: 166 NEALELGALAEENGRLYARFIDRLTFPIYAPNRKLVGFGGRTM-GNHPAKYINSPQTKLF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY + A + K II+ EGY+DV+ L QAG V++LGTAL Sbjct: 225 NKSKLLYGYPLAKEAILK----------EGKIIVTEGYLDVILLHQAGFSYAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P+I+L +DGD G+ AA KA L G VL S G DP Sbjct: 275 TLDHLPLLSKGEPKILLSYDGDKAGIAAALKASRL---LANHGKEGGVVLFSGGLDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + +L + P V+ + ++ E+ ++P ++ + + L+ Sbjct: 332 VAQKRIEELNRLFLRPTPFVEFVLQKSVESYDLSSPLQKEAALKECGGFLRTL-SPLLQE 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L+ T S R + +G + L Sbjct: 391 EYKPLLASLLKIPASLIRT-------------------VKSPRHPLAPPKEGIGAGGSEL 431 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540 EA+L+ T++ P +L+ + L + Q + L E L + +R Sbjct: 432 AEASLIKTILEQPRLLEFVLEYLDSEVFG--VHQAEFELLKLGEFEHPKLLRILLQERIH 489 Query: 541 -LCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRF 588 L E E L+ + R L ++ +R + + ++ Sbjct: 490 PLEESVLKEQLRLMLRHFYSKKLKEIAANKSLDFKIRAFWLGKIRVHLEK 539 >gi|223041181|ref|ZP_03611433.1| DNA primase [Campylobacter rectus RM3267] gi|222877540|gb|EEF12669.1| DNA primase [Campylobacter rectus RM3267] Length = 552 Score = 299 bits (765), Expect = 9e-79, Method: Composition-based stats. Identities = 130/602 (21%), Positives = 243/602 (40%), Gaps = 51/602 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I +++G Y+ + N + CPFHD+K PS + S+G + Sbjct: 2 IDPKSIERLKAQTDIVDVVGHYLPLKKSGAN-----FVCVCPFHDDKNPSMSVSPSRGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC GD + F+ S+ E+V+++A + L V KE ++E Sbjct: 57 HCFSCKAGGDAIKFVMDYEKLSYPEAVEKIAGLQNFTLNYVRGGEPAKENKH-----ILE 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+ L YL RGI I+ F+LG+AP+S ++R ++ Sbjct: 112 NANAFYRSLLYKTPAAVE--YLYSRGITDELIDKFELGFAPESAQTIRLLQNEQIEP--- 166 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + I N Y F NR+ FPI + G+++ FGGRT+S KY+NSP++ +F Sbjct: 167 KEALEVGIVKQNENGIYASFINRITFPIYTHAGRLVGFGGRTISGN-PAKYVNSPQSAVF 225 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K Y + A + + + II+ EGYMDV+ L +AG NVV+ LGTAL Sbjct: 226 DKSTLFYGYHLAKREI----------FTKNQIIITEGYMDVIMLHKAGFNNVVAVLGTAL 275 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL + ++LCFDGDD G+ AA K+ L+ + I G + V++ G DP Sbjct: 276 TTKHLPLLKRGEISVILCFDGDDAGINAATKSALLLAQNEIDG---SVVIIEGGADPADM 332 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ + + + + P ++ + ++ +K + Sbjct: 333 VVAGKIEYLRQIFESGTEIGEFYIRHLASGFDLSRPVQKQKALEAIQAFTASLK-PIVAN 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + L+ + + ++ + + + + + Sbjct: 392 SYAPLVAKILKIAEGSFWLTRGANTQAAQERMQAYEMQN----------FGKNQRGRKDI 441 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L T++ +P + + + L + + ++ + + E + + Sbjct: 442 LEIRFLKTMLENPNLKKIVLENLKTEYFV--RHRDIFEAVARGVGTDDPAVRELMFENYD 499 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 F E + L V ++ + Y + + + + ++I + + Sbjct: 500 --AFKEEDEILKNIV-------ILKVGFYENLHKEYSMKQIPLEEKKQILTKIKKIIEAL 550 Query: 603 AQ 604 + Sbjct: 551 KK 552 >gi|148244440|ref|YP_001219134.1| DNA primase [Candidatus Vesicomyosocius okutanii HA] gi|146326267|dbj|BAF61410.1| DNA primase [Candidatus Vesicomyosocius okutanii HA] Length = 594 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 153/626 (24%), Positives = 269/626 (42%), Gaps = 49/626 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 DF DL + I ++I Q V + DY ACCPFH EKTPSF + K Y Sbjct: 4 INADFKDDLPNRVNIVDIINQRVPLKKAGK-----DYKACCPFHHEKTPSFIVSAEKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C + F+ +E+V+ +A+ +G+ + V D I+ + T + L++ Sbjct: 59 KCFGCGDGNGVIKFVMKFDNLGLVEAVETIASESGISV-VYDKNIKPIDTRLTRYLDLMQ 117 Query: 123 VATDFFHHSLKNARDKRLHY-YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 F+ LK + K Y+ RGI S + F+LG+AP + L + + Sbjct: 118 RVGQFYIQQLKQSLAKNKAVGYVKYRGISSQIAKRFELGFAPPNSNLLFGFKQDSQDIAD 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L D S YD F++R++FPI +++G +IAFGGR+ + KY NSPET + Sbjct: 178 LKVMGLLCDDQYRSGKYYDLFKDRIMFPIHNNKGNIIAFGGRSCNNNFKAKYFNSPETPI 237 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY + Y + S +I++VEGYMDV+SL QAG+ VV++LGT Sbjct: 238 FSKSKELYGLYHMRKYSR----------SIDYILVVEGYMDVVSLHQAGISQVVATLGTV 287 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T L +L++ + I+ CFDGD G +AA++A+++ L + G + F+ L EDPD+ Sbjct: 288 TTVEHLNILFRTTNTIIFCFDGDKAGEKAAWRALNITLPVIKAGITIKFLFLPDKEDPDT 347 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ AF K I + L L+ FNT + + + + I + + Sbjct: 348 LVKKESSQAFVKRIENAQFLSKFLFSHIKTEVDFNTIEGKTLFLERVSMLLRKINYKTYQ 407 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL-------MQSSLVKG 474 + + + + Q ++ + + N + + + + Sbjct: 408 HQLLEGLAGEVNQSIEQIESILERQDISTQSNTFSISKNYEEPPMFNFYDSDEKYQVPMS 467 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + ++ L+N+P+++ + +R + L + + Q+ Sbjct: 468 VPLISNNSLIDQMIGLLLNYPSMVDKTV----MLRVRKINNADILQKLANLVLLQEDITL 523 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E + ++ ++ +QL + D + + AL + Sbjct: 524 ETMVEQFPQKK-----QQLLNLYNKKRVLKNY------DYKDEFLDALL----------K 562 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620 EE +K+ + + E E T L + Sbjct: 563 IEERQKEKSALLITNEIEYTKNLQAR 588 >gi|328950410|ref|YP_004367745.1| DNA primase [Marinithermus hydrothermalis DSM 14884] gi|328450734|gb|AEB11635.1| DNA primase [Marinithermus hydrothermalis DSM 14884] Length = 586 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 164/627 (26%), Positives = 279/627 (44%), Gaps = 58/627 (9%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + + L+ +YV G + CPFH EKTPSFH ++ KG +YCF C Sbjct: 5 EAIRARLDFKGLVERYVALRPAGK----GRWKGLCPFHKEKTPSFHVDEEKGLFYCFGCK 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD SFL + G +F E++++LA GV LP E+ K + +L+ + E+A +F Sbjct: 61 AGGDAFSFLERIEGITFQEALEKLAQETGVELPR----AERNAKPRRELLEINELALAYF 116 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + + YL RG+ ++E F LGYAP L +L++ G + +EAGL Sbjct: 117 RSHL----EGKAWAYLQRRGLTEASVERFALGYAPPGWDGLLRYLQKHGVDPRQGVEAGL 172 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI+ + +DRFR+R+IFPI G+V+AF GR L+ ++ KYLN+PET +F K + L Sbjct: 173 LIERNG--RVFDRFRDRVIFPIHDPLGRVVAFTGRVLNPEDTPKYLNTPETPIFKKSELL 230 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + A L+ ++VEG DV++L Q G V+ LG+AL+ Q Sbjct: 231 YGYAQARAALR----------ERRQAVVVEGLFDVIALHQMGWPEAVAVLGSALSPDQAL 280 Query: 309 LLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRCY 366 LL + R+ L FD D+ G +A +DL + V L G+DP + Sbjct: 281 LLKRAGVERVYLAFDADEAGRKATLAGLDL---EIARSFLVYAARLPEGQDPGDLLVLPN 337 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYS 425 G F++ + +L V+ ++ + P+ + + L + + Sbjct: 338 GAQVFQEALERALSEVEFRFEAASAGLDLTRPEAKRRVLQALLPRLVQAEPFDPVAEALK 397 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 I DRL + + R R + ++++ + + K L E Sbjct: 398 ALIIDRLAIDPRALEDVILTQKK------RRRTETLTTEQVRGMTPTTREPRDKTLLLEL 451 Query: 486 ALLLTLINHP-AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 ++ L++ P L+ Q + D + + L F+ + ++YF PE I +R Sbjct: 452 DIIALLLSAPQEELRTWVQYVEDHTWPPPD-SFLAEFI--EVARKEYFSPERILHHFEKR 508 Query: 545 GFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 G G L ++L +A+ + ++ +R+ Y L+ + E ++ ++ Sbjct: 509 GEGARLFERLMLAGGTIPDLAASLDKSMARLREAY------------LTARLERLKAELK 556 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630 Q E +L+ + EV I Sbjct: 557 Q-----NPEDPIVLLKEIQEVQKAIEA 578 >gi|184157112|ref|YP_001845451.1| DNA primase [Acinetobacter baumannii ACICU] gi|260555733|ref|ZP_05827953.1| DNA primase [Acinetobacter baumannii ATCC 19606] gi|332876321|ref|ZP_08444094.1| DNA primase [Acinetobacter baumannii 6014059] gi|183208706|gb|ACC56104.1| DNA primase (bacterial type) [Acinetobacter baumannii ACICU] gi|260410644|gb|EEX03942.1| DNA primase [Acinetobacter baumannii ATCC 19606] gi|322507010|gb|ADX02464.1| DNA primase [Acinetobacter baumannii 1656-2] gi|323516878|gb|ADX91259.1| DNA primase [Acinetobacter baumannii TCDC-AB0715] gi|332735472|gb|EGJ66526.1| DNA primase [Acinetobacter baumannii 6014059] Length = 621 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L++ GV LP + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115 Query: 116 -----------------------------------------------DLIRLIEVATDFF 128 +L L+E F+ Sbjct: 116 TPPKTVAEPTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L ++ Y +RG+ I+ ++LGYAP+ HL + + + ++ Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + ++ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L++HP L ++ L + L K+ + L F E +E+ Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ ++ + + +V + AL + R L ++ + + Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 600 -----ESRNLRQQLNELTKQI 615 >gi|153820574|ref|ZP_01973241.1| DNA primase [Vibrio cholerae NCTC 8457] gi|126508882|gb|EAZ71476.1| DNA primase [Vibrio cholerae NCTC 8457] Length = 337 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 192/352 (54%), Gaps = 26/352 (7%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY+CF C Sbjct: 1 DLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFYHCFGCGA 55 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKIQTDLIRL 120 G+ + F+ F E+++ LA+ G+ + P K + + L L Sbjct: 56 HGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSEDKRSLYDL 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + F+ LK +K YL RG+ ++ F +GY D +R + Q+ SE Sbjct: 116 MGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYIADEWDLVRRNFGQQRSSE 175 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KYLNSPET Sbjct: 176 DMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKYLNSPETP 233 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKGK LY + L ++ I++VEGYMDV++L Q GV V+SLGT Sbjct: 234 IFHKGKELYGLYEVLQAYREPP----------QILVVEGYMDVVALAQYGVDYSVASLGT 283 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 + T L+LL++ + ++ C+DGD G AA++A++ L +L GN + F+ Sbjct: 284 STTGDHLQLLFRQTNHVICCYDGDRAGRDAAWRALENALSYLKSGNILKFLF 335 >gi|260553981|ref|ZP_05826246.1| DNA primase [Acinetobacter sp. RUH2624] gi|260404867|gb|EEW98372.1| DNA primase [Acinetobacter sp. RUH2624] Length = 621 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 164/681 (24%), Positives = 278/681 (40%), Gaps = 119/681 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L++ AGV LP + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNAGVELPKDNTDNKKLSYTRQVTKPP 115 Query: 116 -----------------------------------------------DLIRLIEVATDFF 128 +L L+E F+ Sbjct: 116 VPAKTVVEPSTQAPIDDQYNTLEPVYFDDPFAQFEQPFNFEEPVQEGNLYDLLENVAQFY 175 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L ++ Y +RG+ I+ ++LGYAP+ HL + + + ++ Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + S+ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 YGLYEGKKL------------KSNDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 ILFKQNNRITIAFDGDIAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGL 397 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F++L+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 398 ENFQRLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L++HP L ++ L + L K+ + L F E +E+ Sbjct: 491 VAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ ++ + + +V + AL + R L ++ + + Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 600 -----ESRNLRQQLNELTKQI 615 >gi|261414936|ref|YP_003248619.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371392|gb|ACX74137.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326528|gb|ADL25729.1| DNA primase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 722 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 155/657 (23%), Positives = 283/657 (43%), Gaps = 60/657 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + I++L I+ +I Q++ + N Y CPFHD+ +PS N + G Y Sbjct: 4 YSDEIIQELKNQADIALVIQQFLPLKKSGVNK----YVGVCPFHDDHSPSMSVNSTLGIY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 CF+C GD F+ F +V+ +A G LP + + + +T + +L Sbjct: 60 KCFACGAGGDVFKFIQEHEKLDFKGAVEWVANFVGFALPNLGNNVNTEVLEERTMVRKLN 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E+A ++F L + YL++R + + F +GYAP R L + + GFS Sbjct: 120 ELACEWFEQQL--TLSPKALEYLNKRHVSPETRKQFHIGYAPTGREGLIGYAARNGFSPR 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV------KYLN 235 ++AGL ++ + D+FR+RL+ I++ G V+AFGGR LS S KY+N Sbjct: 178 DCVKAGLAVEK-ENGGIADKFRDRLMIAIQNLSGVVVAFGGRDLSDPASHNGIKLAKYMN 236 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET L+ K L+ + N + K + +I+VEGY D++SL Q+GVQNVV Sbjct: 237 SPETALYSKRDILFGLNHSRNAIMK----------ENAVIIVEGYFDLISLYQSGVQNVV 286 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ GTALTE +L + + L FDGD G A +++++VL + Sbjct: 287 AASGTALTENHASILARYAKTAYLVFDGDAAGQNATRRSLEIVLPKGLSPKVFALSRPDG 346 Query: 356 GE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 + DPD+F+ G AF + + + + N+P++RA K I Sbjct: 347 TKIDPDNFVNEQGPDAFRRALRTA----EDWLSYLGRTMPNNSPEDRAAFITQAKTLIKS 402 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I++ +LR Y + + +R + + Q V Sbjct: 403 IENPELRNQYLKLVSERYSTT--------RSLAGIKVAHPKREKAPTAEQPAAPQVSVPW 454 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADI-------RYDNNELQKLWSFLFSDFV 527 +L +R A LL +P +L + +D+ + + + + + Sbjct: 455 ELLSPIEVRFANLLF---RNPTLLDRAAEYFDMDFAASGIQIFDSPLIDEFIQSILAQYA 511 Query: 528 EQKYFLPEEIHQRLCER---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-- 582 E F P +++ L + +L + + + + T +++ Y++ + Sbjct: 512 ETGAFSPRVLYESLSPQLQLFLEQLPDETWKTPNEILEFYDTLAVLTLNLCDRYKKLIPL 571 Query: 583 ------ALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 L + ++ + I +++I+ +T AE+ + L E++ +I+++ Sbjct: 572 DSEAGMRLRMQLNKFTQGIQTISRKRKISAITPDVFAEQIIQSKTPLIELYTEINEL 628 >gi|169634099|ref|YP_001707835.1| DNA primase [Acinetobacter baumannii SDF] gi|169152891|emb|CAP01929.1| DNA primase [Acinetobacter baumannii] Length = 621 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L++ GV LP + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115 Query: 116 -----------------------------------------------DLIRLIEVATDFF 128 +L L+E F+ Sbjct: 116 TPPKMVAEPTTQAPIEDQYNTFDPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L ++ Y +RG+ I+ ++LGYAP+ HL + + + ++ Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + ++ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L++HP L ++ L + L K+ + L F E +E+ Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ ++ + + +V + AL + R L ++ + + Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 600 -----ESRNLRQQLNELTKQI 615 >gi|325121169|gb|ADY80692.1| DNA primase [Acinetobacter calcoaceticus PHEA-2] Length = 622 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 162/684 (23%), Positives = 275/684 (40%), Gaps = 124/684 (18%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FIE ++ L++ G+ LP + + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIEVMKELSSSTGIELPKDNTENKKLSYTRQVTKPP 115 Query: 116 ------------------------------------------------DLIRLIEVATDF 127 +L L+E F Sbjct: 116 VTKTNAAEPVIPQQPSDESYNTLEPVFFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQF 175 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 + L ++ Y +RG+ + I+ ++LGYAP+ HL + + ++ Sbjct: 176 YEQQL--PHSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 LI ++ +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY + SS ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q Sbjct: 398 LENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQ 457 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + R++L R S S + K E Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + L++HP L ++ L + + L K+ + + + E + Sbjct: 491 AIAILMHHP-FLYIHFEGLQAYIHQDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548 Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 + + ++ L A +V + +L + R L ++ + I Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAKEYSLSLQERYLRQKLKSPISLI-- 600 Query: 605 VTAKGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 601 --------ESRNLRQQLNELTKQI 616 >gi|239501207|ref|ZP_04660517.1| DNA primase [Acinetobacter baumannii AB900] Length = 621 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 163/681 (23%), Positives = 277/681 (40%), Gaps = 119/681 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L++ GV LP + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSNTGVELPKDNTDNKKLSYTRQVTKPS 115 Query: 116 -----------------------------------------------DLIRLIEVATDFF 128 +L L+E F+ Sbjct: 116 TPPKTVAELTTQAPIEDQYNTFEPVYFDDPFAQFEQPFSFDEPVQEGNLYDLLENVAQFY 175 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H L ++ Y +RG+ I+ ++LGYAP+ HL + + + ++ Sbjct: 176 EHQL--PTSQKAKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLG 229 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 230 LIRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 289 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + ++ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLN 337 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 ILFKQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGV 397 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 398 ENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQS 457 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 458 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 490 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L++HP L ++ L + L K+ + L F E +E+ Sbjct: 491 IAILMHHP-FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACS 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ ++ + + +V + AL + R L ++ + + Sbjct: 548 SYCHEIADIMQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----- 599 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 600 -----ESRNLRQQLNELTKQI 615 >gi|171914126|ref|ZP_02929596.1| DNA primase [Verrucomicrobium spinosum DSM 4136] Length = 613 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 160/642 (24%), Positives = 274/642 (42%), Gaps = 56/642 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 L I +L+G+YV R TN + CPFH EKTPSF+ N ++G Y+CF C V G Sbjct: 2 LAATDIVDLVGRYVKLRRVGTN-----WRGLCPFHGEKTPSFYVNPARGSYHCFGCGVGG 56 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFH 129 + F+ G F+++V+RLA AG+ + D E+ KI+ L++L + +FH Sbjct: 57 TAIRFVMEHDGLQFMDAVKRLADSAGIRIQEEVWDANAERTAKIRNGLVKLHRDISAWFH 116 Query: 130 HSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L K + YL RGI++ + +++GYAP S L + + ++E ++ G+ Sbjct: 117 LLLMKGQVAEEARAYLKSRGINAATAKSWEMGYAPASTPMLMKWAEEHKYTENLLVAGGI 176 Query: 189 LIDGDNSAT----SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFH 243 L GD + Y RFR+RL+FPIR+ G+VIAF GR L ++ KYLNSPET+LF+ Sbjct: 177 LARGDEDSGRGGQIYARFRHRLMFPIRNDYGEVIAFSGRLLDSNAKAAKYLNSPETMLFN 236 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K K L+ + + K+ R ++ EG +D++ ++G +NVV+ LGTA T Sbjct: 237 KSKVLFGLDKSKRAIIKANRA----------VVCEGQIDMIMAFESGFENVVAPLGTAFT 286 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 E+ R+L + + +VLCFD D+ G +AA +A + G V L +GEDPDS I Sbjct: 287 EFHARMLKRHAEEVVLCFDSDNAGYKAAERAFHI---LAPTGLVVKVAPLPQGEDPDSLI 343 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G AF+ + ++ D + + R+ E+ + I + + R Sbjct: 344 RKEGPQAFQAKLDDARDFFDHMIDYASSTRNMAETREKTRFAGDMATMIQLLDNNIARDA 403 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL-------VKGKL 476 Q + RL L + + + + + S + Sbjct: 404 AIQKVCVRLNILESDFRKQVARLAKSIANQQQKAAAGKNGGNGASGSGASGATDRPEEAE 463 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS----FLFSDFVEQKYF 532 P ++ + +L + +L L + L + + Sbjct: 464 LPPPHPHARQMIRLAVTSAEVLALIR--------THAQLDALAAVPGCELLELVFKSQ-- 513 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 ++ F L + + + +I Q Q + F+ L Sbjct: 514 --SDLSTSGGLSAFLTTLTPAEERAFSRVVAEPPQRVSIETALQTLQ-----HIEFQGLE 566 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + ++ Q ++ +L + + +I +Q Sbjct: 567 NLYQNVTTRLRQPGLA--KDEVILLQQEVIRLKGEIGVRRAQ 606 >gi|212697196|ref|ZP_03305324.1| hypothetical protein ANHYDRO_01763 [Anaerococcus hydrogenalis DSM 7454] gi|212675971|gb|EEB35578.1| hypothetical protein ANHYDRO_01763 [Anaerococcus hydrogenalis DSM 7454] Length = 449 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 139/455 (30%), Positives = 225/455 (49%), Gaps = 26/455 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++L + I +IG YVD + Y CPFH+EKTPSF +D K + Sbjct: 4 ISDDKKNEILENSDIVAIIGDYVDLKKSGN-----SYKGLCPFHNEKTPSFTVDDKKQLF 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD +SF+ G S+I+S++ LA+ AG+ + D K ++ K L + + Sbjct: 59 HCFGCGEGGDVVSFIMHKEGLSYIDSMKYLASKAGIKID--DSKSSRENKRLNRLYDINK 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F+ +L + ++ YL RG S+ + F LG+A +S L ++++K + + Sbjct: 117 DIMMYFYKNLLTDKAGQI--YLKNRGFRSNIVNTFMLGFAKNSWDDLLSYVKEKDYLLDD 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I GL I + YD++RNRLIFPI + G+VI FGGR++ KYLNSPE+ +F Sbjct: 175 IENLGL-IKKSKNGKYYDKYRNRLIFPIINHYGKVIGFGGRSI-DSTMPKYLNSPESEVF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K NLY K IILVEGYMDV+ L G+ V+SLGT+L Sbjct: 233 KKRYNLYGLNIFKKQSNK------------DIILVEGYMDVIGLNNQGIDQAVASLGTSL 280 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q +LL + + + +C+D D+ G++A +AI++ L G + N + L +G DPD F Sbjct: 281 TNDQAKLLKRYAKNVFICYDEDNAGIKATDRAIEI---LLDEGIKPNIISLEKGLDPDDF 337 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ YG+ AF K + E+ + + + + + + + +E+ E + I+ R Sbjct: 338 VKKYGRDAFIKKMDEASDVYNYKYNKILDIYASSKENEKFEKLNLFIEFLTSIESDLTRE 397 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + + Y +KK + Sbjct: 398 IFVNNVSKLFDIDKSTLKESVLKYNDNYKKTFNKK 432 >gi|317490614|ref|ZP_07949085.1| DNA primase [Eggerthella sp. 1_3_56FAA] gi|316910270|gb|EFV31908.1| DNA primase [Eggerthella sp. 1_3_56FAA] Length = 513 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 137/457 (29%), Positives = 208/457 (45%), Gaps = 27/457 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +IG+ +R D+W CCP H+EKTPSF + + + Sbjct: 73 ISEEDIQKVREANDLVEVIGERTPVKQRGR-----DFWCCCPLHNEKTPSFKIDPALQLW 127 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD F+ SF E+V+RLA A + + + + L + + Sbjct: 128 HCFGCGEGGDVFGFIMKTEDLSFPEAVRRLAERAHIDIAESGGRKSIGSSRKARLKAVCD 187 Query: 123 VATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F+H L YL RG+ + ++LG+AP L HL KGF Sbjct: 188 ETSQFYHCQLMRNPGSDASAARSYLGARGLGGEVPKTWQLGFAP-GHGQLVRHLSAKGFK 246 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 +++++A + ++ DRF NR++FPI +G+ IAFGGR + KGE KYLNS ET Sbjct: 247 PDEMVQANVA-LSNDGGKLRDRFYNRIMFPINDPQGECIAFGGRVVGKGEP-KYLNSQET 304 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LFHK + LY A + S+ ++VEGY DV++L +AGV+N V++LG Sbjct: 305 PLFHKSQVLYGMDKAKAAMA----------STGIAVVVEGYTDVIALHEAGVRNAVATLG 354 Query: 300 TALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLL 353 TALT +RLL RIV FDGD+ G RAA +A+ + + V L Sbjct: 355 TALTMRHIRLLSRHAQHRIVYLFDGDEAGQRAADRALAFIDDSMTPEAGKSRIELAAVTL 414 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DP F+ G +KLI + PL+ +R + + RA + Sbjct: 415 PDNLDPADFVAQRGAEELQKLIANAQPLLKYGIERRLARHDLSRAEGRAAALADALQVLA 474 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 IKD L Y+ I ++ Q I + Sbjct: 475 PIKDSMLARDYAVQIATSVRAREQDVIDQLEHLKAPK 511 >gi|312880429|ref|ZP_07740229.1| DNA primase [Aminomonas paucivorans DSM 12260] gi|310783720|gb|EFQ24118.1| DNA primase [Aminomonas paucivorans DSM 12260] Length = 595 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 164/616 (26%), Positives = 257/616 (41%), Gaps = 52/616 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 D ++ + + + ++G YV + + CPFH EKTPSF + + Y+C Sbjct: 2 NDEVRRIKERLDLVEVVGDYVKLRKAGK-----SFVGLCPFHQEKTPSFSVSRERQTYHC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD FL + G +F ++++ L+A GV L + + + + ++E A Sbjct: 57 FGCGAGGDVFRFLMEMEGWTFPQALEVLSARTGVVLEH-------RGRRREEGGDVLEEA 109 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ SL + + YL R + A E F+LG++ + SL +HLR++G + + Sbjct: 110 LAFYRASLGASEGEAARAYLRRRELPQEAWERFELGWSLPAWRSLEDHLRRQGLNLRDAV 169 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 E GLL++G +YDRFR R++FPIRS G+++ FGGR L GE KY+NSPE+ LF K Sbjct: 170 ERGLLVEG--PKGTYDRFRGRVMFPIRSETGRLLGFGGR-LVDGEGAKYVNSPESPLFEK 226 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 K LY A ++ ++VEGY+D + G V+SLGTA TE Sbjct: 227 RKVLYLLPQAKRAIR----------EKGSALVVEGYLDAIRCHLNGHPEAVASLGTAFTE 276 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 Q LL + + R ++CFD D G AA K + G V V L +G+DPD +R Sbjct: 277 EQADLLARQADRCLICFDTDAAGQEAALKG---MYVLRRKGLDVRVVRLPKGKDPDELLR 333 Query: 365 -CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G AFE + E+LPL + + P ER + I + +R Sbjct: 334 DPQGAEAFEGALTEALPLP--RFHVAARRKWLEDPQERKRGLEEVLGGIASLSVLDVRPS 391 Query: 424 YSQAIRDR------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 D L+ L ++ R +G S G+ Sbjct: 392 LPDVAADLGLLPHELEALLRQRGWGGVSEKRPPFPPRSGERGEGIFPPPGVSIHESGEEE 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 P EAAL L + E + + + S L PEE+ Sbjct: 452 PAPDPWEAALCHLLWSREGSRSSSAPEGVLPLLRSECARAVASALL------CGESPEEL 505 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 R + G + L E+ +V + R R R+ EE Sbjct: 506 EARWLQTG-DQRSAALLALGGAFLEELYLEESPEEEVLRQL--------RLREWRRRYEE 556 Query: 598 IEKQIAQVTAKGEAEK 613 + +++ + + E E+ Sbjct: 557 LHRRVVRKESLSEEER 572 >gi|153003632|ref|YP_001377957.1| DNA primase [Anaeromyxobacter sp. Fw109-5] gi|152027205|gb|ABS24973.1| DNA primase [Anaeromyxobacter sp. Fw109-5] Length = 607 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 255/636 (40%), Gaps = 50/636 (7%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 + +IG++V+ R + CC FH E+TPSFH + C+ C GD + Sbjct: 2 DVVAVIGRHVELKRSGR-----TWKGCCVFHGERTPSFHVYPEDKHFKCYGCGAYGDVFT 56 Query: 76 FLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 FL L G F E V+ LA G+ +P + ++ K + +++ E A ++ Sbjct: 57 FLQRLEGKEFPEVVKALAQEVGIEIPDAAEEDGAEARQRRKERNEVLAACEAAARYWAAR 116 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 L++ + YL+ERG+ + F++G + D L + +KG + ++ AGLL++ Sbjct: 117 LQSRFGEAARRYLEERGVGEESTRRFRIGISADGWSDLASRVAEKGVAAPALMRAGLLVE 176 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES----VKYLNSPETILFHKGKN 247 +YDRFRNRL+FPI GQVI FGGR++ S KY+N+PET L+ K K Sbjct: 177 K-EQGGAYDRFRNRLMFPIAGMDGQVIGFGGRSMPGEASAKAGAKYINTPETPLYKKSKV 235 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY A ++K + +LVEGY DV+ L QAG+ N V+ GTALT + Sbjct: 236 LYGLDLARETIRK----------ARAALLVEGYFDVIGLHQAGITNAVAVCGTALTAEHV 285 Query: 308 RLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 LL + + + FDGD GL A KA + + G DPD + R + Sbjct: 286 ELLQRCDCREVTVLFDGDVAGLAAPAKAAAALFPAGVAGKVAVLPSEGGKTDPDEYARAH 345 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRS-----FNTPDERAELEIHLKNCINHIKDQKLR 421 G+ E L+ + PL + L R E +E+ L + + + R Sbjct: 346 GRAGVEALLERASPLSEHLIDRAVERTCGGPARQAALEEKLAAVRELTPFVRMMPEGLAR 405 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + AI RL E G AR P L P+ Sbjct: 406 SVFEDAIAKRLDLDSGALRAELEGERPRRPALARPEAAPAPRPPRTAPGSRVKVLLPGPA 465 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL P L +E L L L + R Sbjct: 466 ADALGLLAA---FPEALAGIAEEENLPGLMPPGPLADLARDLIR-----GPLPLDAALAR 517 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E G + L+++ A + + AL + L+ + E E+ Sbjct: 518 VQEAGDDDALRRVREIAGPARPPAERAGVELRKA--------ALKSKLERLALEMGEAER 569 Query: 601 QIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633 ++ + + + + L++ ++ ++H +E Sbjct: 570 RVVKAGSAAVDDLSIQYQRLVNQKRDLQRRLHSLER 605 >gi|229587227|ref|YP_002845728.1| DNA primase [Rickettsia africae ESF-5] gi|228022277|gb|ACP53985.1| DNA primase [Rickettsia africae ESF-5] Length = 595 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 169/633 (26%), Positives = 299/633 (47%), Gaps = 50/633 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M +F + L I IS+++ Q + R+ G+Y CPFH EKTPSF ++SK Sbjct: 1 MRVAPEFYEFLRNRINISDVVRQKIALTRK-----SGNYVGLCPFHQEKTPSFTVSNSKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+YCF C GD + F S + G S+ ES +LA G+ +P + K ++ + +++ + Sbjct: 56 FFYCFGCKAAGDVIKFTSNISGLSYNESAIKLAIDYGIEIPKLTAKQKEFYEESDEILNI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A FF L + +YL RGI ++ F +G+AP + + + Sbjct: 116 LELANKFFRTQLT----PEILHYLHARGITEETVKEFSIGFAPKNNKFEKFFHDKNIDII 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + Y+ F NR+ PIR+ +++ FGGR L +G KYLNSPET Sbjct: 172 KLGKAGLIGKRENG--EIYNLFSNRITIPIRNIYNKIVGFGGRVLGEG-LPKYLNSPETT 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A++ K + ILVEGY DV++L QAG V+SLGT Sbjct: 229 VFQKSETLYGEHKAISSSYKK----------NHSILVEGYFDVIALHQAGFSETVASLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++TE L LW+ I+LC DGD+ G++A+ + I+L L + +++F+ L G DPD Sbjct: 279 SVTENHLHKLWRAGDEIILCLDGDNAGIKASIRTINLALPLINSEKKISFIRLPSGLDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G F KLI + + L +M+W E +SF T +E+A LE +LKN + I D L Sbjct: 339 DAVNKNGVDFFAKLIDKRISLSEMIWHIEYSGKSFKTAEEKANLEKNLKNYCSKISDSDL 398 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + +D++ Q N +K ++ + ++ + Sbjct: 399 KVSYYRFFKDQIWQ------------------NLVTTQKKATTKNSNLAPIISSHGYSEL 440 Query: 481 SLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E A L+ P IL+ + + ++ ++N L++ ++ ++ ++ EI Sbjct: 441 EILEHAFCALLVKFPIILEDKDIRDFILNLNFNNKLLEEFRNWYLNEIIDNN-VEASEIT 499 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + F ++ L + S +D+ + L+K++ L++ Q+E Sbjct: 500 AIVEKTSFFDIFLLLSKTDNLFLDISFNKNNIRLDLLWQW-----LHKKYYLINLQQEYA 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 T + EK + + ++ ++ + Sbjct: 555 VT--INSTDNHDFEKVLLYKKEILKIANELQVL 585 >gi|255321784|ref|ZP_05362939.1| DNA primase [Campylobacter showae RM3277] gi|255301264|gb|EET80526.1| DNA primase [Campylobacter showae RM3277] Length = 551 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 131/603 (21%), Positives = 250/603 (41%), Gaps = 54/603 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I++++G Y+ + N + CPFHD+K PS + S+G + Sbjct: 2 IDPKSIERLKAQTDIADIVGHYLPLKKSGAN-----FVCVCPFHDDKNPSMSVSPSRGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC GD + F+ S+ E+V+++A + L V KE ++E Sbjct: 57 HCFSCKAGGDAIKFVMDYEKLSYPEAVEKIAGLQNFTLNYVRGGEPAKENKH-----ILE 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+ L YL RGI I+ F+LG+AP+S ++R ++ Sbjct: 112 NANAFYRSLLYKTPAAVE--YLYSRGITDELIDKFELGFAPESAQTIRLLQNEQIEP--- 166 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + I N Y F NR+ FPI + G+++ FGGRT+S KY+NSP++ +F Sbjct: 167 KEALEVGIVKQNENGIYASFINRITFPIYTHAGRLVGFGGRTISGN-PAKYVNSPQSAVF 225 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K Y + A + + + II+ EGY+DV+ L +AG NVV+ LGTAL Sbjct: 226 DKSTLFYGYHLAKREI----------FTKNQIIITEGYLDVIMLHKAGFNNVVAVLGTAL 275 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL + ++LCFDGDD G+ AA K+ L+ + I G + V++ G DP Sbjct: 276 TTKHLPLLKRGEISVILCFDGDDAGINAATKSALLLAQNEIDG---SVVIIEGGADPADM 332 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ + + + + P ++ + ++ + +K + Sbjct: 333 VVAGKIEYLRQIFESGTEIGEFYIRHLASGFDLSRPVQKQKALEAIQAFTSSLK-PVVAN 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + L+ + + ++ + + + + Sbjct: 392 SYAPLVAKILKIAEGSFWLTRGTNTQAAQERMQAYEMQNLRANSGRK-----------DP 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L T+I + ++ + + L + + ++ + + + E I ++ Sbjct: 441 LEIQILKTMIENESLKKFILENLKPDYFA--RHRAVYEAITAGADANDPSVREIIFEKYE 498 Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + E+L+ L ++ + Y + + + + ++ EI K+ Sbjct: 499 AFKNEEEILQNLKFFKTRF----------YKNLYKKYSASQISLEEKQPILKKINEILKE 548 Query: 602 IAQ 604 + + Sbjct: 549 LKK 551 >gi|168704759|ref|ZP_02737036.1| DNA primase [Gemmata obscuriglobus UQM 2246] Length = 636 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 139/652 (21%), Positives = 257/652 (39%), Gaps = 66/652 (10%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 P + K + I ++G Y++ + A CPFH++ PS + + Y Sbjct: 5 PVELTKQIKAASDIVAVVGSYINIVPAGKI-----FKAVCPFHNDTRPSLDIDPHRQRYK 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 C+SC +GD +F+ F E+ LAA AG+ L + ++ +T L+ ++ Sbjct: 60 CWSCGAQGDVFAFVQNHEKVGFREARAILAAKAGIKLDE---QQSPQDHHRTRLLEVMRW 116 Query: 124 ATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A + + L+ + Y+ R + F +G+AP + L + +G + Sbjct: 117 AQAKYAYQYLEGDLGEEARKYMGARKLSGKTTRDFGIGFAPINGDWLVKLALAEGVPTDT 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYLNSPE 238 ++E GLL D YDRFR+R++FPI+ RGQV+ FGGR + KY NS E Sbjct: 177 LVEVGLLAARDGQRGYYDRFRDRVMFPIKDVRGQVVGFGGRIMPNNPLAARGPKYYNSAE 236 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LFHK + LY A + ++ ++ +VEGY DV+ Q GV VV+++ Sbjct: 237 TPLFHKKELLYGLDLARHA------------NAGYLAVVEGYTDVMMAHQCGVPQVVATM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTAL + L + +P++VL +D D G +A+++ + + L G D Sbjct: 285 GTALNPQHVAQLSRYAPKVVLLYDADAGGFAGVDRALEM---FVSQDVELAVATLPDGLD 341 Query: 359 PDS-FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK- 416 P ++ G F++++ + +D + E + + + + + + Sbjct: 342 PCDLLVKPGGTETFKEVLTSAADALDFKLNKLLERDPNPSVETKRRIADDILGVMASAPP 401 Query: 417 -----DQKLRYYYSQAIRDRLQ---------------QLFQKYITEHSGYGRYWKKNARH 456 Q R I RL QK + R Sbjct: 402 MPGAAAQMKRELIVTRIAHRLGFKQETMWVRFGELRKDHEQKQREAQQKEQEGHRDGGRP 461 Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNEL 515 P L + +G P++ E L+ L++ P ++ LA + L Sbjct: 462 TVTVRPDAVLPTTERPRGASKAGPAVAAERQLVELLLSDPLLVPVAAARLAPDEITHTGL 521 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++ S L+ E + +RL + E L ++ ++++ G E Sbjct: 522 RRILSELYGVHAAGGVPDLESLRERLAD---REDLFEVSQKLQFVGQQMQDRE------- 571 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q LA + + + E + Q+ + ++ L+ + + + Sbjct: 572 ----QWLARLLKRFAEMKAEAEARRAKEQLAGASD-DEAIELLRRIQQTQQR 618 >gi|212702264|ref|ZP_03310392.1| hypothetical protein DESPIG_00275 [Desulfovibrio piger ATCC 29098] gi|212674327|gb|EEB34810.1| hypothetical protein DESPIG_00275 [Desulfovibrio piger ATCC 29098] Length = 575 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 159/626 (25%), Positives = 265/626 (42%), Gaps = 68/626 (10%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 RD I+ + + I++++ +YVD R + A CPFH E PSF N+ +G +Y Sbjct: 3 SRDAIRAIKERLNITDIVRRYVDLKRNG-----PRWVAPCPFHQETKPSFSVNEEQGLFY 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTDL 117 CF C GD F + G F E++++LAA AG+ L + ++ + + Sbjct: 58 CFGCQASGDIFDFYGRINGLDFRETLEQLAAEAGITLERGPVDKKRQEEDRQRRSSRQTM 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +R+ E+A F +LK+ + Y+ RG+ +E F LG+A +SL L++ G Sbjct: 118 LRMYELAAAHFAAALKSPEAEECRAYIQRRGLSPEIVERFGLGWARRDWHSLDLALQRAG 177 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + EAGL + + + YDRFR RLIFPI++ QVIAFGGR ++ + KY+NS Sbjct: 178 YDMRLAAEAGL-VGRSDRGSVYDRFRGRLIFPIKNLSNQVIAFGGRIIADEDEAKYINSS 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T ++ KG++LY A + R +L EGYMDVL+L Q G N V Sbjct: 237 DTPIYKKGEHLYGLAQARKGITVKGRA----------LLTEGYMDVLTLHQFGYDNAVGV 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTALT Q++ L + ++ L FDGD G +AA ++ ++ L G VL+ GE Sbjct: 287 LGTALTPDQIKRLSGFTSQLTLLFDGDRAGRKAALRSCEM---LLTRGLACTVVLMPEGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 D DS +R G AFE L ++ + T + H++ Sbjct: 344 DIDSLLRTQGVEAFEALQAQAPDGLRFCLDVLRALAPRETVEWAKNFLRHVEV------- 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +L Y + LQ + + R R + Sbjct: 397 PELVSPYVSRLATHLQLSEAELRQGLADSRRPGPDGQTTRPSRARQN------------- 443 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +R+ +++ + +P L + AD+ ++ ++LW + ++ + Sbjct: 444 ----MRDRQIMMYAVRYPDRLDDLRDLGADLALQSDIARQLWDKIEEWGSDEAPY----- 494 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 LD++ ++ + EA D AL + Q++ Sbjct: 495 --------------HLDQREKNFWSFCRGAEAAPRDDGDRELAALRHDLDAYYAATQRQS 540 Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623 + + Q T G+ + L E Sbjct: 541 VTAALRQNTGTGDFAADLEYLRALQE 566 >gi|313897468|ref|ZP_07831011.1| DNA primase [Clostridium sp. HGF2] gi|312957838|gb|EFR39463.1| DNA primase [Clostridium sp. HGF2] Length = 588 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 151/627 (24%), Positives = 253/627 (40%), Gaps = 49/627 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I ++IG+YV R+ Y CPFHD+ PS K Sbjct: 3 RLSEQEISQIRAKADIVDVIGRYVPLTRKGK-----SYKCVCPFHDDHDPSMSIAADKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRL 120 Y CF C G+ F+ SFIE+V ++A AGV L D K+ L + Sbjct: 58 YKCFVCGAGGNVFMFVQNYEKISFIEAVYKVAEYAGVTLEHTLDVTPRIKDPHLQALHKA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F H+ L K + YL R I I+ F++GY P +L L K ++ Sbjct: 118 CREAIEFTHYQLDTLDAKNVKEYLMRRNITEEIIKRFEIGYNPMD-DALYRFLHAKKHAD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + ++ AGL+ D F +R++ PI G+ + F R +++ E KY+N+ ET Sbjct: 177 DDLVSAGLVRVTSLGMK--DVFSHRIMIPIHDEFGEPVGFTARRVAENEEAKYINTTETD 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG ++N+ A +K+ + LVEG MDVL+L + + N V++LGT Sbjct: 235 IYKKGNLIFNYHRAKQEARKAKKA----------YLVEGAMDVLALEKVELHNAVATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QLRLL L IV+C+DGD G A YK + V G DPD Sbjct: 285 AMTKEQLRLLQLLHVPIVVCYDGDKAGRNATYKFGKMAREAQ---LPFEIVDNKYGLDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I YGK L+ +++ +D L++ + + ++ E + I ++D Sbjct: 342 EVIDVYGKDELRALLDKTISWIDFLFEYLLGRYNLDNYSQKKEFAQEMALEIQALQDDFE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y +R+ + F + + R + R + +S Sbjct: 402 KQSYFIRLRELTE--FDMQVEQPKEERRAIHQPQPPRQSFLTFPKSGRSH---------- 449 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L ++N A +EL ++ ++ KL ++ + E+ Sbjct: 450 --AEHEILSQMLNGIAASNLFKEELGFLK--DDTGNKLAMYIIDYYRTHTTLAVAELLDV 505 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E LL ++ E DV Q ++ L + + + K Sbjct: 506 IREEDVKALLLEITNW-----------ELAREDVDMAVLQEAIAKEKSCFLDDKIQLLNK 554 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQ 627 +I V E K A+ + L + + Sbjct: 555 KIRSVNDPMEKAKLAVEKNQLIKEREE 581 >gi|309775525|ref|ZP_07670525.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53] gi|308916619|gb|EFP62359.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53] Length = 590 Score = 297 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 148/630 (23%), Positives = 254/630 (40%), Gaps = 52/630 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I ++IG+YV R+ Y CPFHD+ PS K Sbjct: 5 RLSEQEISQIRAKADIVDVIGRYVPLTRKGK-----SYKCVCPFHDDHDPSMSIAADKQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRL 120 Y CF C G+ +F+ SFIE+V ++A AGV L + K+ L + Sbjct: 60 YKCFVCGAGGNVFTFVQNYEKISFIEAVYKVAEYAGVTLEHTLDIAPRIKDPHLLALHKA 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F H+ L K + YL +R I I F++GY P +L L K ++ Sbjct: 120 CREAIEFTHYQLDTLDAKNVKEYLLKRNITEEIIRRFEIGYNPMD-DALYRFLHAKKHTD 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E I+ AGL D F +R++ PI + G+ + F R +++ E KY+N+ ET Sbjct: 179 EDIVAAGLARVTSIGMK--DVFAHRIMIPIHDAYGEPVGFTARRVAENEEAKYINTTETD 236 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG ++N+ A +K+ + LVEG MDVL+L + + N V++LGT Sbjct: 237 IYKKGDLIFNYHRAKPEARKAKKA----------YLVEGAMDVLALEKVELHNAVATLGT 286 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QLRLL L IV+C+DGD G A YK + V G DPD Sbjct: 287 AMTKEQLRLLQLLHVPIVVCYDGDKAGRNATYKFGKMAREAQ---LPFEIVDNKYGLDPD 343 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I YGK + L+ +++ +D L+ + ++ E + I ++D Sbjct: 344 EVIDVYGKDELKALVEKTISWIDFLFVYLLGRYNLENYSQKKEFAQEMAQEIQALQDDYE 403 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y +R+ + F + + R ++ R + +S Sbjct: 404 KQSYFIRLRELTE--FDMQVEQPKEERRTVQQQQPLRQSFLTFPKSGRSH---------- 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L ++ A +EL ++ ++ KL ++ + E+ Sbjct: 452 --AEHEILSQMLCGIAASNLFKEELGFLK--DDISNKLAMYIIDYYRTHTTLAVAELLDV 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E LL ++ E DV Q ++ L + + + K Sbjct: 508 IREEDVKSLLLEIANW-----------ELAREDVDMAVLQEAIAKEKSCFLDDKIQLLNK 556 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +I + + + A L +++ + + Sbjct: 557 KIR---SVNDPMEKARLAMEKNQLIKEREE 583 >gi|323342094|ref|ZP_08082327.1| DNA primase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464519|gb|EFY09712.1| DNA primase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 587 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 139/617 (22%), Positives = 249/617 (40%), Gaps = 41/617 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I D+ I + I +Y+ ++ N YW CPFHD+ PS + + Sbjct: 3 RMPEELINDIRSKTDIVDTISRYMTLSKKGKN-----YWGVCPFHDDNNPSMSVSPDRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE-KKEKIQTDLIRL 120 Y CF C G+ SF+ FI++V + A+ + + +P+ ++ + L + Sbjct: 58 YKCFVCGAGGNVFSFVKDFEKIGFIDAVVKTASFIDIDVTEYEPQNTVPVDEEKLKLFQA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ F L K L+ RG I+ F +G A + +L KGF+E Sbjct: 118 LDETQKFTEFQLYTKTGKDALSKLEARGYSMELIKKFGIGVAFGDNQLSK-YLIAKGFNE 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++++A L+ D D F R++FPI G+VIAF R LS VKY+N+ ET Sbjct: 177 KELVDADLVRVTDRGIE--DVFYQRIMFPIYDRHGRVIAFSARALSDENKVKYINTSETR 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ KG +YN A +K FI++ EG D ++ ++G N VS LG Sbjct: 235 LYTKGLTIYNLHNAKEAARK----------HDFILVAEGVTDTIAFTKSGYDNTVSLLGV 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T Q+++L + S +VL FDGD GL A Y + + V G DPD Sbjct: 285 ACTNEQIQMLKQCSSNVVLAFDGDRAGLEATY---QVGMKLRKAHCSVTVWYNDTGLDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 IR YG +K + + + +D L N ++ D R + + + + + +D+ Sbjct: 342 ECIREYGIERVQKGVDDRINWLDFLMSYGIGNYGLDSFDNRKRVVQFMIDHLKN-EDELE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + YY + + D+ + + + +++ + ++ Sbjct: 401 QSYYLKKLSDKTNFEYSVLSQQLNARSVMIERDTPLISNNVSNTMEFNVNIP-------- 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E A+L ++ +L + ++ + + Q+ +I Sbjct: 453 ---ERAILRQMLISKEAAYLYRDQLGFL--VSDLATDFALIILDCYRNQEVIEIADILSL 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE--- 597 + ++ G A+ E NI +R + R+L + K + Sbjct: 508 NISEKMKKFAIDIESSDLLDGYNRASMEQNINLIRNHLVVMGIHDMKGRVLQQDKIDDQA 567 Query: 598 --IEKQIAQVTAKGEAE 612 +E+ I Q+ K + E Sbjct: 568 ALLEEAIKQLRNKNKRE 584 >gi|257464030|ref|ZP_05628415.1| DNA primase [Fusobacterium sp. D12] gi|317061551|ref|ZP_07926036.1| DNA primase [Fusobacterium sp. D12] gi|313687227|gb|EFS24062.1| DNA primase [Fusobacterium sp. D12] Length = 608 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 152/637 (23%), Positives = 271/637 (42%), Gaps = 43/637 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I LL + I +++G++V+ + N Y CPFH + PSF N K Sbjct: 2 FRQEDIDRLLEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ +SF S SF +SV+ LA +PL + + +++ + ++E Sbjct: 57 KCFVCGAGGNPISFYSKYKKISFQDSVRELAKKYHIPLQEI-KQNKEENEKFERYYSIME 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F + + + YL +R + I LGYA S L HL ++G E+ Sbjct: 116 EAHQYFTNLIFENVGREALEYLAKRKVGPKLIRENNLGYASSSWDQLFNHLIERGCKAEE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + GL+ + YD FRNR+IFPI S +G+VIAFGGRTL + + KY+NSP+T + Sbjct: 176 LELLGLVKKR-ENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQSKEIPKYINSPDTPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KGK LY + + +++EGYMDVLS G ++ LGTA Sbjct: 235 FKKGKGLYGL-----------ERVSSIKQKDYAMMMEGYMDVLSTVSYGFDTSIAPLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT Q+RLL + + ++L FD D+ G AA +AI L + + L +DPD Sbjct: 284 LTREQVRLLKRYTDNVILSFDSDNAGQMAAERAIFL---LKEESFNIRVLQLHGAKDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ +G+ AF K + E L D L+ + S + + + + + + + + Sbjct: 341 FLKKFGREAFLKEVQECLEAFDFLYAYYKKEYSLDDIMSKQKFIERFQEFFHSLSKELEQ 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y Q D L Q GR ++ Q + + + S Sbjct: 401 ELYLQKFSDLLGMDIQVLRPLLFPKGRKISFHS--------GQETVAEEINSQHEQEVYS 452 Query: 482 LREAALLLTLI----NHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E + I H + Y L ++ + + +K++ L +++ Sbjct: 453 VLEKLSIQISILDLQQHKEATDAKYYHFLKEMPFQSEFTRKIFQDLSQYEKDKEEQSRNT 512 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLL 591 + + + E E +++ A L + I + R ++ Sbjct: 513 MIENIREMFQKENYNTEEKEYLFALLSECLEQEKIEEQKIIVCRDWARETFKNTMTTNPF 572 Query: 592 SR-QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + Q +++E+++ + K + + + ++ + Sbjct: 573 KQLQLKQLEQKM--LKNKKDMGQFLEMYQQYLKLREE 607 >gi|262280061|ref|ZP_06057846.1| DNA primase [Acinetobacter calcoaceticus RUH2202] gi|262260412|gb|EEY79145.1| DNA primase [Acinetobacter calcoaceticus RUH2202] Length = 622 Score = 296 bits (757), Expect = 7e-78, Method: Composition-based stats. Identities = 166/684 (24%), Positives = 277/684 (40%), Gaps = 124/684 (18%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EK+PSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L++ AGV LP + + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSSAGVELPKDNTENKKLSYTRQVTKPP 115 Query: 116 ------------------------------------------------DLIRLIEVATDF 127 +L L+E F Sbjct: 116 VAKANTAEPVVPQQPIDESYNTLEPVFFDDPFAQFEQPFNFEEPVQEGNLYDLLENIAQF 175 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 + H L ++ Y +RG+ + I+ ++LGYAP+ HL + + ++ Sbjct: 176 YEHQL--PNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQ----HLEKAFPYDIDGLKQL 229 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 LI ++ +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + Sbjct: 230 GLIRSSDNGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQL 289 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY + SS ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 290 LYGLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHL 337 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 338 NILFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREG 397 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQ 426 F+KL+ +S L D ++ T +TP+ ++ + L+ + RY +Q Sbjct: 398 LENFQKLLQQSPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLNQ 457 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + R++L R S S + K E Sbjct: 458 SFREKLGL--------------------GKRFTPQISHDASLSFNIHTKD-------EDF 490 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + L++HP L ++ L + + L K+ + + + E + Sbjct: 491 AIAILMHHP-FLYIHFEGLRAYIHQDELLAKVL-AILNRIFDDLPDDQELATYYVLGACS 548 Query: 547 G--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 + + ++ L A +V Q AL + R L ++ + I Sbjct: 549 SYCHEIADIMQRTNIQALTQAP------EVADKLAQEYALGLKERYLRQKLKSPISLI-- 600 Query: 605 VTAKGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 601 --------ESRNLRQQLNELTKQI 616 >gi|308233951|ref|ZP_07664688.1| DNA primase [Atopobium vaginae DSM 15829] gi|328943963|ref|ZP_08241428.1| DNA primase [Atopobium vaginae DSM 15829] gi|327491932|gb|EGF23706.1| DNA primase [Atopobium vaginae DSM 15829] Length = 620 Score = 296 bits (757), Expect = 8e-78, Method: Composition-based stats. Identities = 142/648 (21%), Positives = 264/648 (40%), Gaps = 57/648 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D + + + L+ + V R D W CCPFH EK+PSFH N S G + CF Sbjct: 4 DDKERVRAAVNFEQLVAETVPLRPRGA-----DLWGCCPFHHEKSPSFHINPSTGLWKCF 58 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C + GD +++ F ++++ LA GV L + + L ++ A Sbjct: 59 GCGLGGDVFAYIMQREHLEFPDALKFLADKYGVELTQTSHRSS-HTPKRVRLYACMQAAQ 117 Query: 126 DFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F+ +L ++ + + YL R S + + LG+A L L ++GF+ ++ Sbjct: 118 EFYERTLLCSRSTKAQEARMYLQGRSFGSAVSKRWHLGFAL-GSNELLAELTKQGFTRQE 176 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ L +RF +R++FPI +G+ IAFGGR + KYLN+ +T+LF Sbjct: 177 LLACDLARL--TPQGLRERFFDRVMFPIHDEQGKCIAFGGRVI-GDGKPKYLNTKDTVLF 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KGK+L+ F A N L S I+ EGY DV+S+ +AG N V++LGTAL Sbjct: 234 SKGKHLFAFDEAKNSL----------VVSGTAIVCEGYTDVISMHRAGFTNCVAALGTAL 283 Query: 303 TEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T ++L+ + +I+ FDGD G +AA +A+ + V+L + DP Sbjct: 284 TLDHIKLIERFATRKIICMFDGDAAGQKAAERAVQ---FLDQTRLEMLCVVLPQNLDPAE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F+ + K +++ + PL+D + + E+ +R + + +K Sbjct: 341 FLSAHSKEELAEILSHARPLLDFVLAKRLEHFDTRIEGQRVQALQSTSQLLAPLKHSLFL 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK------NARHRDQKGPSQRLMQSSLVKGK 475 Y+ + D L + + NA Q + S+ + Sbjct: 401 DDYASQVADLLDMDVNHVKASIKAAHKEATRAYTLTNNAPVGLQTSIQNNTLSSNSSRHA 460 Query: 476 LSKKPSL---------REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD- 525 L+ + L E LL + P ++ + +A + + ++L + + Sbjct: 461 LTPQHLLSADARMQKSSELELLSLMAAKPQLMHQYQDRIAHFNWLDASHEQLAWAMLATP 520 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + LL G + + Q ++ L+ Sbjct: 521 VGATPAQVVGAATRAVPSAP--NLLAS--------GRVVSFSNLAPEMQFQFLVASVDLW 570 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R+ ++I+ Q+ + E++ L+ ++ I +++S Sbjct: 571 SSI----REVKKIKTQLKLARSSLTFEESQKLLEKATQLQKHISELKS 614 >gi|293400670|ref|ZP_06644815.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305696|gb|EFE46940.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 589 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 144/631 (22%), Positives = 255/631 (40%), Gaps = 50/631 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I + I +++G+YV R+ N Y A CPFHD+ PS N K Sbjct: 3 RLSEQEINQIRAKADIVDVVGRYVPLTRKGRN-----YVAQCPFHDDHDPSMSVNADKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120 + CF C G+ F+ SFIE+V ++A AGVP+ KK L + Sbjct: 58 FKCFVCGTGGNVFGFVQKYEKISFIEAVYKVAEYAGVPIEHSLALPVKKIDPHLAALYKA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + ++ H+ L + + YL +R + I+ F +GY P+ +L L K + Sbjct: 118 NQETIEYTHYQLDTLDARHVKEYLYKRNLTDAIIKTFAIGYNPEE-DALYRFLHAKKIPD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I+ AGL D F NR++ PI + G + F R + + + KY+N+ ET Sbjct: 177 SDILAAGLARMSSMGMK--DVFANRIMIPIHDADGHPVGFTARRIKESDEAKYINTTETD 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG ++N+ A +K+ + + LVEG MDVL+ + G+ N +++LGT Sbjct: 235 VYKKGDLIFNYHRAKPEARKAKK----------VFLVEGAMDVLAFEKVGLHNALATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A+T+ QL+LL L IV+C+DGD G A YK + + V G DPD Sbjct: 285 AITKTQLQLLKMLHVPIVVCYDGDMAGKNATYKFGKMAVQEQ---IAFEIVDNRYGLDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I YGK L +L +D L++ + + ++ E + + + I H++D Sbjct: 342 EIIDAYGKDELIALSSRTLSWIDFLFEYLLTRYNLDNYSQKKEFAMEMADAIKHLQDDFE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y +R+ Q+ T + R + +S L K + Sbjct: 402 KESYYIRLRELTDFDMQEKNTAIN-----------ERQIQKKETFGKRSFLTFPKSGRSH 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L +++ + +EL ++ ++ KL ++ + ++ Sbjct: 451 --AEYEILSQMLSGISASNYYKEELGFLK--DDTCNKLAIYIIDYYRTHTLMEIADLLDT 506 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E L + E +V + + L + + + + Sbjct: 507 IKEETVKTLALDIADW-----------ELAREEVDMEVLKEAVEKVKDCFLDDKIQMLNE 555 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +I V E K A + L + + ++ Sbjct: 556 KIKTVNDPMEKAKLAGEKNQL--IKERGERL 584 >gi|78044503|ref|YP_359315.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901] gi|77996618|gb|ABB15517.1| DNA primase [Carboxydothermus hydrogenoformans Z-2901] Length = 575 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 154/612 (25%), Positives = 262/612 (42%), Gaps = 57/612 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M++ ++ ++ + + + +L+ +Y + N Y CPFH+EKTPSF + K Sbjct: 1 MSF-QEVVEKIRNRVDLVDLVSEYTRLKKSGRN-----YVGLCPFHNEKTPSFSVSPEKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF C GD SF+ +F E+V LA + LP K L R+ Sbjct: 55 LYYCFGCQKGGDIFSFIMEKERLNFKEAVFYLAKKYNIELPETG----KAYNKNEHLYRM 110 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + +A F+H LK + YL RGI ++ F LG+AP S +L L KG++ Sbjct: 111 LLLAAKFYHEILKTEAAGKARDYLQSRGITEETVKDFMLGFAP-SAKALPAFLSSKGYNP 169 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 ++++ G++ + +DRF RLIFPI G+V+ FGGR L E KY NSP+++ Sbjct: 170 GELVKIGIVTKSYSG-NLHDRFAGRLIFPIFDREGRVVGFGGRAL-GEEKPKYFNSPQSV 227 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KGK Y F A ++ ILVEGY DV+SL QAGV+N ++ LGT Sbjct: 228 IFDKGKLFYGFKQARTTIR----------EKRQAILVEGYFDVISLHQAGVKNAIACLGT 277 Query: 301 ALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 A TE L L I+L +D D G +AAY+A+++++ + + L +D Sbjct: 278 AFTEEHLNFLKNYGYIEEIILAYDSDQAGEKAAYRALEMLVRASA-DLSIKIIRLGEFKD 336 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD I+ G TAF + I ++ + L + E + +S +E+ L L + ++ Sbjct: 337 PDELIKNRGATAFLEEIEKAKTPAEFLLELELKEKSSLNLNEQRALLKKLIPYLVLEYEK 396 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 +R+ + K ++ ++K + ++ + Sbjct: 397 TPA-----LFAERIGGIASKLKMSEGALVDEIRREIYKNEEKSLNNSSFGENITNEHKNY 451 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E+ LL L+ +P +E + + +F+ E K+ E+ Sbjct: 452 GLLKVESELLGLLLEYPEYQKEFLNDFFFYEFQGKN-----QEVFNYLKENKFPDRED-- 504 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L E + + +GY + L + + +Q + + Sbjct: 505 ---------------PLYSYMTYLRINCPEGDPKTLYEGYVRYLEEHYK----KQQVQRL 545 Query: 599 EKQIAQVTAKGE 610 +I+ +G Sbjct: 546 TLEISLAEKEGN 557 >gi|257453205|ref|ZP_05618504.1| DNA primase [Fusobacterium sp. 3_1_5R] gi|317059739|ref|ZP_07924224.1| DNA primase [Fusobacterium sp. 3_1_5R] gi|313685415|gb|EFS22250.1| DNA primase [Fusobacterium sp. 3_1_5R] Length = 608 Score = 296 bits (757), Expect = 9e-78, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 273/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I L+ + I +++G++V+ + N Y CPFH + PSF N K Sbjct: 2 FRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F S SF E+V+ LA +PL + + +++ + +++E Sbjct: 57 KCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYKIME 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F H + + YL +R + I+ LGYA S SL HL + G+ E+ Sbjct: 116 EAHQYFSHLIFENIGREALEYLVKRKVGPKLIQENNLGYASPSWDSLFNHLIELGYQSEE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + GL + + YD FRNR+IFPI S +G+VIAFGGRTL + + KY+NSP+T + Sbjct: 176 LELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSPDTPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KGK LY + ++ +++EGYMDVLS G ++ LGTA Sbjct: 235 FKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ Q++LL + + ++LCFD D+ G AA +AI L G + + L +DPD Sbjct: 284 LTKEQVKLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ +GK AF + + L D L+ + + + + + + + + + + Sbjct: 341 FLKKFGKEAFLQEVQACLEAFDFLYSYYKKEYALDDIMSKQKFVERFQEFFHSLSKELEQ 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y D L Q +N H ++ + + + + Sbjct: 401 ELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHLRERKQEEEIFVQDFQELYSVLEKL 457 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + ++L + + + Y L D+ + + +K++ L + I + + Sbjct: 458 SVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGRDTQSRNTILESI 517 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------SRQK 595 E + +++ L I + + + A + + Sbjct: 518 REIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQLRL 577 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 +++E++I + K + + + ++ + Sbjct: 578 KQLEQKI--LKNKKDMGQFLEMYQQYLKLREE 607 >gi|78357096|ref|YP_388545.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219501|gb|ABB38850.1| DNA primase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 576 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 156/629 (24%), Positives = 268/629 (42%), Gaps = 64/629 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + + ++ L +YV+ R + A CPFH E PSF N+ +GF+YCF C Sbjct: 9 VQAIKSRLNLAELARRYVELRRIGN-----RWMAPCPFHQETKPSFSINEEEGFFYCFGC 63 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125 GD + F S + G F E++++LA AGV L DP+ E++ K ++ + E+AT Sbjct: 64 QASGDIIDFYSRINGLEFREALEQLAEEAGVTLGQRQADPREEQERKFRSRCYEMYELAT 123 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 F +L++A Y+ +RGI + F+LG++ +L + L++ G++ Sbjct: 124 KHFRRNLQSAAGAECRSYIADRGIPDEIVSSFELGWSKREWAALSDELQRAGYAPRDATR 183 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AGLL D+ YDRFR RLIFPI++ G+VIAFGGR +S + KY+NS ++ ++ KG Sbjct: 184 AGLLSSNDSG-RMYDRFRGRLIFPIKNLSGKVIAFGGRIISSEDQAKYINSSDSTIYKKG 242 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +LY + A + + R +L EGYMDVL+L Q G N LGTALTE Sbjct: 243 DHLYGLYQARRSISQHKRA----------LLTEGYMDVLALHQFGHTNACGVLGTALTEA 292 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q++ L + L FDGD PG +AA ++ +++L G VL+ GED DS + Sbjct: 293 QVKRLGGFCSHVDLLFDGDGPGRKAALRSCEMMLV---KGMDCRVVLMPEGEDIDSLLHQ 349 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G AF +L + ++ + ++ S E+ + + L +Y Sbjct: 350 QGAQAFRELTESAPDGLEYCIRTLRDSYSPR------EILDWTAAFLRQLDRPDLASFYV 403 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + L S ++ ++ + K E Sbjct: 404 TRLAGGLGLQEADLRASLSSPAGRNRQQRAAGNRV---------------QTGKEKKLEM 448 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L+ L+ P + A+ + + +W L + ++ E Sbjct: 449 HLMEFLVRFPHHISNLQARGAEEVLVSRWARDMWDKLLAFGADEAP-------NHFSEE- 500 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 LW A+ + Q+ LY + L+++++ +A + Sbjct: 501 -------------QKALWIRCRVASPIPAENERQELEDLYSKLAELNQKEQS-RMMLAAL 546 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634 + +L + + + + Q Sbjct: 547 RQLSSDANSEAGFELLRAMKDNLGRSDGQ 575 >gi|33519537|ref|NP_878369.1| DNA primase [Candidatus Blochmannia floridanus] gi|33517200|emb|CAD83582.1| DNA primase [Candidatus Blochmannia floridanus] Length = 588 Score = 296 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 148/596 (24%), Positives = 276/596 (46%), Gaps = 38/596 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I +L+ I ++I Q + ++ +N + ACCPFH EKTPSF N K F Sbjct: 4 RIPQALIDELISRTNIVHIINQRIPLKKQGSN-----FIACCPFHVEKTPSFTVNLKKKF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCFSC G+ ++FL +FIES+Q+L+ + G+ + K + + + Sbjct: 59 YYCFSCGSHGNIINFLMHHDQLTFIESIQQLSILHGISIKHFLYKTKNNNYHGDIIYTFM 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +++ ++LK+ + + YL RG+ +I FK+G+AP ++ ++ ++ + Sbjct: 119 RDICNYYQNNLKHKKYSYAYKYLKNRGLTDSSIIDFKIGFAPMGWNNILTNINLSSYNHK 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240 I ++G+ I + YDRFRNR++FP+ + G++IAFGGR + KYLNSP+T Sbjct: 179 LIHQSGMWIKYHQNKK-YDRFRNRIMFPMHNKLGKIIAFGGRLIQNNNTEPKYLNSPDTY 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY F+ + + +I+LVEGY+DV+ L Q GV V+SLGT Sbjct: 238 IFKKNQYLYGFYE----------ICTKYKNIPYILLVEGYIDVIILTQFGVNYAVASLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++T ++L++ ++ +++ C+DGD G +AA++ ++++L +L + F+ L EDPD Sbjct: 288 SITINHIQLIYSVTNQMICCYDGDSAGKKAAWRTLNIILPYLHDHREICFMFLPVKEDPD 347 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + IR GK F K I ++ L + ++ T + R +L + IN I Q L Sbjct: 348 TLIRKIGKDNFLKQISKAQSLSNFIFDTLLHKVKIQTLEGRVKLSHLILPMINKIPGQIL 407 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Q + +++ L + + + + S++ ++ Sbjct: 408 KLCLLQQLSNKIGILDENKLNQLLIQ----------------HSPTLTSNVQNNDITYNI 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 L+ LI +P + + +N + + L Y E++ Sbjct: 452 KH---ILIGLLIQNPKLAKLVPTIKGLKECKDNIIIEFVK-LVKLCKSYPYLTTEQLIHY 507 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEA-NIVDVRQGYQQALALYKRFRLLSRQK 595 + + R + + +D + +++ L+SR + Sbjct: 508 YHQHDENNCFTNIIRLAHWNHMITDDMITVTFIDTLTKLYDLILEHRQNILISRDR 563 >gi|257467205|ref|ZP_05631516.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563] Length = 608 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 145/632 (22%), Positives = 270/632 (42%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ I L+ + I +++G++V+ + N Y CPFH + PSF N K Sbjct: 2 FRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F S SF E+V+ LA +PL + + +++ + +++E Sbjct: 57 KCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYKIME 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A +F H + + YL +R + I LGYA S SL HL + G+ E+ Sbjct: 116 EAHQYFSHLIFENIGREALEYLVKRKVGPKLIRENNLGYASPSWDSLFNHLIELGYQSEE 175 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + GL + + YD FRNR+IFPI S +G+VIAFGGRTL + + KY+NS +T + Sbjct: 176 LELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSSDTPI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KGK LY + ++ +++EGYMDVLS G ++ LGTA Sbjct: 235 FKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ Q++LL + + ++LCFD D+ G AA +AI L G + + L +DPD Sbjct: 284 LTKEQVQLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ +GK AF + + L D L+ + + + + + + + + + + Sbjct: 341 FLKKFGKEAFLQEVQACLEAFDFLYTYYKKEYALDDIMSKQKFVERFQEFFHSLSKELEQ 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y D L Q +N H + + + + + Sbjct: 401 ELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHVRARKQEEEIFVQDFQELYSVLEKL 457 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + ++L + + + Y L D+ + + +K++ L + I + + Sbjct: 458 SVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGKDTQSRNTILESI 517 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------SRQK 595 E + +++ L I + + + A + + Sbjct: 518 REIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQLRL 577 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 +++E++I + K + + + ++ + Sbjct: 578 KQLEQKI--LKNKKDMGQFLEMYQRYLKLREE 607 >gi|298372238|ref|ZP_06982228.1| DNA primase [Bacteroidetes oral taxon 274 str. F0058] gi|298275142|gb|EFI16693.1| DNA primase [Bacteroidetes oral taxon 274 str. F0058] Length = 690 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 157/689 (22%), Positives = 280/689 (40%), Gaps = 74/689 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + I ++G +V +R N CPFH+EKT SF+ + ++G + Sbjct: 2 IDPQTVAKIHDAAKIEEVVGDFVSLRKRGANL-----VGLCPFHNEKTGSFNVSPARGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 CF C G+ + FL S+ ++++ LA + + + E+K + + +++ + Sbjct: 57 KCFGCGEGGNAVRFLMLHEHLSYPDALRYLAKKYHIEIVEKELTDEEKSQLSDRDNMLNV 116 Query: 121 IEVATDFFHHSLKNARDKRL-HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A ++F +L+ + + YL ERG I F LGY+ +S ++GF+ Sbjct: 117 NEFAVNYFVKNLEKDEGRAVGRAYLHERGFSDDIIAKFALGYSVNSYDDFYNEAHRRGFA 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 ++ ++ GL+ D T DRFR R++FPI S G+VI FGGR L K + KY+NSPE Sbjct: 177 DKYLVATGLVFKNDKG-TFTDRFRGRVMFPIHSLAGKVIGFGGRILEKNDKLAKYVNSPE 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +++K LY F A N + K R LVEGY DV+S+ QAGV+NVV+S Sbjct: 236 SEIYNKSNELYGIFFAKNQIVKQDR----------CFLVEGYTDVISMHQAGVENVVASS 285 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ Q++L+ + + I + +DGD G++A+ + ID+ L G + VLL G+D Sbjct: 286 GTSLTDGQIKLIHRFTQNITVIYDGDAAGIKASIRGIDM---LLEYGMNIKAVLLPDGDD 342 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDSF R + F + I + + N P ++A + + I I +Q Sbjct: 343 PDSFARKNNASDFIEYIERHQVDFIEFKINMMSDEAKNDPVKKAAMIGDVIKSIAIIPNQ 402 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---------------RHRDQKGPS 463 +R Y + RL+ E + R ++ ++ + P Sbjct: 403 IIRATYVKECASRLEIDEVVIYNEINKILRKRHEDEFKRRESQTNRAANALQNTATQAPD 462 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTL-----------------INHPAILQEQYQELA 506 K E L+ + +N + + Sbjct: 463 NESATLQQATRKDRNALYKHEKELIRFVVREGQKRLVEADNGQGYLNVGEYIYNVL-NIN 521 Query: 507 DIRYDNNELQKLWSFLF-----------SDFVEQKYFLPEEI-HQRLCERGFGELLKQLD 554 +R ++ + F + + L ++ ++ + Sbjct: 522 GLRIQTPVFARILEEFHCNADNAEFDCENYFKNHADLDINALAIEFLTDKY---IVGKRF 578 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + L ++ EE E + Q+ + + Sbjct: 579 ASRPPKEEIDVPDIVDDDPRSEVLHSFAKLRLEKEKDKQRLEETE-ALRQLKSSLDKIIL 637 Query: 615 AILISIL-HEVHIQIHQIESQ-EAMIEGF 641 + L +E+ + QIES + I+GF Sbjct: 638 EYANATLNNELAAYLKQIESSPDTQIDGF 666 >gi|315918335|ref|ZP_07914575.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563] gi|313692210|gb|EFS29045.1| DNA primase [Fusobacterium gonidiaformans ATCC 25563] Length = 610 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 146/635 (22%), Positives = 271/635 (42%), Gaps = 34/635 (5%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + ++ I L+ + I +++G++V+ + N Y CPFH + PSF N K Sbjct: 1 MKMFRQEDIDRLMEQLNIVDVVGEFVELKKSGAN-----YKGLCPFHADNNPSFSVNPQK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 CF C G+ ++F S SF E+V+ LA +PL + + +++ + + Sbjct: 56 NICKCFVCGAGGNPITFYSKYKKISFQEAVRELAKKYHIPLQEI-KQNKEENEKFERYYK 114 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 ++E A +F H + + YL +R + I LGYA S SL HL + G+ Sbjct: 115 IMEEAHQYFSHLIFENIGREALEYLVKRKVGPKLIRENNLGYASPSWDSLFNHLIELGYQ 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPE 238 E++ GL + + YD FRNR+IFPI S +G+VIAFGGRTL + + KY+NS + Sbjct: 175 SEELELLGL-VKRRENGQYYDVFRNRVIFPIYSIQGRVIAFGGRTLEQDKEIPKYINSSD 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F KGK LY + ++ +++EGYMDVLS G ++ L Sbjct: 234 TPIFKKGKGLYGL-----------ERVSGIKQKNYAMIMEGYMDVLSTVSYGFDTSIAPL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ Q++LL + + ++LCFD D+ G AA +AI L G + + L +D Sbjct: 283 GTALTKEQVQLLKRYTENVILCFDSDNAGQMAAERAIFL---LKEEGFNIRVLQLKGAKD 339 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD F++ +GK AF + + L D L+ + + + + + + + + + Sbjct: 340 PDEFLKKFGKEAFLQEVQACLEAFDFLYTYYKKEYALDDIMSKQKFVERFQEFFHSLSKE 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y D L Q +N H + + + + Sbjct: 400 LEQELYLHKFSDLLGMDVQVLRPLL---FPKGTRNFSHVRARKQEEEIFVQDFQELYSVL 456 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + ++L + + + Y L D+ + + +K++ L + I Sbjct: 457 EKLSVQISILDLQQHKESEEAKYYHFLKDMPFQFDFTRKIFQDLEKYEQGKDTQSRNTIL 516 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------S 592 + + E + +++ L I + + + A + Sbjct: 517 ESIREIFTKDNYTIEEKEHLFELLSECLERDKIEEQKHIVCRDWAREMFKNTVVTDPFKQ 576 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++E++I + K + + + ++ + Sbjct: 577 LRLKQLEQKI--LKNKKDMGQFLEMYQRYLKLREE 609 >gi|15805628|ref|NP_294324.1| DNA primase [Deinococcus radiodurans R1] gi|9910834|sp|Q9RWR5|PRIM_DEIRA RecName: Full=DNA primase gi|6458299|gb|AAF10180.1|AE001918_5 DNA primase [Deinococcus radiodurans R1] Length = 571 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 164/619 (26%), Positives = 261/619 (42%), Gaps = 54/619 (8%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 +G+YV G CPFH EKTPSF + KG+Y+CF C GD F+ + Sbjct: 2 VGEYVRLTPAGK----GRLKGLCPFHKEKTPSFQVDTEKGYYHCFGCKASGDVFGFVQQM 57 Query: 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140 SF +++++LA AG+ + + EK+ DL + A D+F L Sbjct: 58 EHLSFGDALRKLADRAGIQI-----DAKYGEKVSRDLYEVNAFALDYFRSHLPGP----A 108 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL RG+ I F+LGYAPD L + R KG SE++++EAGLL + + YD Sbjct: 109 LDYLRGRGLSDETIAAFELGYAPDGWDGLLKLARTKGVSEKQLLEAGLLTENPENGRVYD 168 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 RFR R++FPIR G+++ FGGR L KYLN+PET F KG+ LY A + L Sbjct: 169 RFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETAAFKKGELLYGLDKARSGL-- 225 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVL 319 + +++VEGYMDV+S+ Q G V+SLGTALT +LL + IVL Sbjct: 226 --------GGGAELVVVEGYMDVISMHQHGFTGAVASLGTALTAEHAQLLERLGAQSIVL 277 Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 FD D GL+A +D V+ RV + G+DP + + + L Sbjct: 278 MFDQDGAGLKATLAGLDQVIGAK---FRVRATSVPSGKDPADALLAGDDAGIREALAGGL 334 Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 V + TE +T + + + + L + ++ D AI ++ + Sbjct: 335 DEVKYRVQAATEKYGVDTNEGKRRVLMELLPRMQNL-DP------LDAIAQDMRGAACEL 387 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + G + K + L + L S E ALL L+ P++L Sbjct: 388 L------GIRPEALLDWITSKAKRRTLTDTHLAGMSQSSGEEEHELALLRQLLVDPSLLA 441 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + L + N ++K+ Q P++I + +LL +L + RD Sbjct: 442 KLDGSLP---WRNEAVRKV------MLAAQGARSPDDILDIFRGQPEEQLLIRLMFEGRD 492 Query: 560 AGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 +G S + Y + + L + + ++KQ+ + + Sbjct: 493 SGSLSRASSQEYEQKVTTYAAHAVDDIQVTLNIDALKTEVDLLKKQLLSTPPAEQLALLS 552 Query: 616 ILISILHEVHIQIHQIESQ 634 + + + + Sbjct: 553 QIQELQRAIEAEKRARRGS 571 >gi|161546626|ref|NP_860730.2| DNA primase [Helicobacter hepaticus ATCC 51449] Length = 552 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 142/598 (23%), Positives = 262/598 (43%), Gaps = 58/598 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ L +I I ++IG Y++ + +N Y ACCPFH+EKTPSF + +KGFY Sbjct: 2 ISKHSLETLKQNIDIVDVIGSYIELRKSGSN-----YMACCPFHNEKTPSFIISPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +C+ C V GD + FL SF+ESV+++AA+ L + +K + I +++ Sbjct: 57 HCYGCGVGGDAIKFLMEYEKLSFVESVEKIAAMTNFALEYENTYEKKPDSI------VLD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ L + K YL R + + +IE F+LGY S ++ + +E Sbjct: 111 EIMRFYQKQLLSH--KPSLEYLASRQVANASIEKFRLGYCGASFETINFLNAKILNKQEA 168 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + I G ++ Y RF +R+IFPI S G+V+ FGGRT+ + KY+NSP++ +F Sbjct: 169 LEF---GIIGKDNGREYARFNDRIIFPIHSPNGKVVGFGGRTM-SNANAKYINSPQSKIF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY ++ A + + K + II+ EGY+DV+ L QAG V++LGTAL Sbjct: 225 NKSKLLYGYYLAKDRIYKQKK----------IIVCEGYLDVIMLHQAGFDYAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L LL K P+++L +DGD G+ AA+KA ++ I G V+ G DP Sbjct: 275 TKEHLPLLRKGEPKVILSYDGDKAGINAAFKAAKILSEASIEG---GVVIFENGADPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + +L + ++ + + P ++ + ++ + L+ Sbjct: 332 VAHKQINELSELFSHPISFIEFVLTHIARSYELENPLQKEKALAESTQFLHTL-SPLLQE 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L + T+H+ Sbjct: 391 EYKPLLARLLSLPTRLIHTQHNKAHSTQTIFNASMQ----------------------DF 428 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRL 541 E+ L+ + + P ++ + + + + +K+ + + + + L ++ + Sbjct: 429 AESVLIKSFLEKPNLIDFAIEYIDISLF---KYKKIEFGLVTNQCYDDPRLLAISLNDNI 485 Query: 542 CE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + L V A + ++ + + + ++L+ +K E+ Sbjct: 486 KPLPDLPSLKEHLRLFVTQAYSQLLGQIPHSNEMSLRRKSEIIKELKTKILTLKKGEL 543 >gi|310659060|ref|YP_003936781.1| DNA primase [Clostridium sticklandii DSM 519] gi|308825838|emb|CBH21876.1| DNA primase [Clostridium sticklandii] Length = 580 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 144/525 (27%), Positives = 241/525 (45%), Gaps = 29/525 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +FI+D+ I I ++I YV+ Y CPFH+EK+PSF N+ K + Sbjct: 2 IDDNFIEDVKARINILDIISSYVELK-----GNAESYKGLCPFHNEKSPSFMVNEKKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIR 119 CF C GD ++F+ F+++++ LA A +P P + + +++ L++ Sbjct: 57 KCFGCGEGGDAIAFIMKKENLDFMDALKVLAEKANIPWPEDKTITLQQRQTAELREKLLQ 116 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + +A ++ L N DK Y+ R + I+ F LGYAP S +LREHL KG+ Sbjct: 117 IHLIAARYYFQMLWNNVDKS-LDYIKRRNLSDKTIKKFGLGYAPRS-TALREHLLSKGYI 174 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E+++IE+GL + DRF R++FPI RG+VIAFGGR + KYLNS +T Sbjct: 175 EKELIESGLFVSRGTQIK--DRFFGRIMFPIFDIRGRVIAFGGRVI-DSSLPKYLNSSDT 231 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++FHK +LY A N N + I LVEGYMDV+++ Q G + V+SLG Sbjct: 232 LIFHKKNHLYGLNIAKN------------NLTRDIFLVEGYMDVIAMHQYGFSSAVASLG 279 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE Q + + K + L +D D+ G++A + ID+ I + S DP Sbjct: 280 TSLTEQQAQSIKKYCNNVYLAYDNDEAGIKATLRGIDI---LKINELSAFVLDFSPWNDP 336 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++ FEK+I S + ++ + S + ++ + Sbjct: 337 DEYLSNNSTEEFEKIISNSKSSLQFQIEQIQKKYSLDMEKDKITFIKEASFVLKKHSSPV 396 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + D + +E G + K + K ++ ++ + K + Sbjct: 397 EIETEIIRLSDITGLSIKSIGSEVYGKY-FSPKQFEVQGMKKSNKVTEKNDIKIHKDEEA 455 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + E + L L+NH + L+ + N E ++++ L Sbjct: 456 WLITEFSFLNYLVNHISEYDVIKNMLSKEDFSNEESREIFDMLSD 500 >gi|317065079|ref|ZP_07929564.1| DNA primase [Fusobacterium ulcerans ATCC 49185] gi|313690755|gb|EFS27590.1| DNA primase [Fusobacterium ulcerans ATCC 49185] Length = 591 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 146/632 (23%), Positives = 262/632 (41%), Gaps = 52/632 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I L+ + I ++G++V+ + + Y CPFH + +PSF + SK Sbjct: 1 MRYKSEDIDMLIESLRIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ + F S SFIE+V+ L+ G+P+ +K + ++ Sbjct: 56 ICKCFVCGAGGNPIKFYSEYKKISFIEAVEELSKKYGIPI-KGTRNSKKNNENYDKYYKI 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A +FF + + + YL R ++ I+ +LG+AP+ L +HL KG+ Sbjct: 115 MEDAHNFFKEYIFSNGGREAMEYLAARKLNPKIIKDNELGFAPNKWNELNDHLISKGYEL 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + +I GL+ + + YD FRNR+IFPI S G++IAFGGRTL + KY+NSP+T Sbjct: 175 KDLIALGLVKE--SENGQYDVFRNRIIFPIYSPTGKIIAFGGRTLENNKEVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKNLY + ++ +L+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNLYGL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +LL + + I+L FD D G A ++ ++ G + ++L +DP Sbjct: 282 TALTEEQGKLLKRYTSNIILSFDSDAAGQSATERSGMILKTL---GFNIRVLVLEGAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YGK +F K + S+ + D L+K ++ + + K + Sbjct: 339 DEYLKLYGKESFLKCVKNSVEIFDFLFKYYSKEYDLSNMMSKQNFINRFKEFFQSVDTDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + +L R + + S + + Sbjct: 399 EKSLYLDKLSKQLNIEKDILKETLIDKNRKKSR-----------KIEEVSENISISREEA 447 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 S E L ++ + + +K++ +L E + + Sbjct: 448 ASKLEELTLGLILAKNEYFEYFKNKNIKGSLT----RKVFQYLKERDEESNIVRELKDNV 503 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----- 594 L + E + + A ++ E + + + + + + +R+ Sbjct: 504 ELTKAETDE----WEIVICMAINDFSSEERTNKLLEEIFISWFRIELKEKQRNRENISKT 559 Query: 595 --KEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + IE ++ K + E+ Sbjct: 560 IGLKSIELKLNAADG---FSKILDIYKEYEEI 588 >gi|237751997|ref|ZP_04582477.1| DNA primase [Helicobacter winghamensis ATCC BAA-430] gi|229376564|gb|EEO26655.1| DNA primase [Helicobacter winghamensis ATCC BAA-430] Length = 559 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 140/597 (23%), Positives = 264/597 (44%), Gaps = 57/597 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I L + I +I Y++ + + Y ACCPFH EKTPSF N +KGFY Sbjct: 2 IQQQSIDALKNQLDILEVISHYIEVKKMGS-----SYKACCPFHQEKTPSFVVNANKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ ++ E++++LA + V L + ++++ Sbjct: 57 HCFGCGASGDSIKFVMEYEKLNYAEAIEKLAQLYNVRLEYSQKSQNNEN------YKIMD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++ L + + Y+ +RGI + F+LG+AP + + R ++ Sbjct: 111 FMNGYYQTML----NAEVESYIKQRGITTEIKARFELGFAPQNHEIMAHLQRNMVNLQDA 166 Query: 183 IIEAGLLID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L +D + Y R RLIFPIRS++ ++I FGGRTL KY+NSP+T L Sbjct: 167 LNFGILGVDLENGVKRYYARLTQRLIFPIRSAQNKIIGFGGRTL-VNHPAKYINSPQTKL 225 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY + A + + +I+ EGY+DV+ L QAG N V++LGTA Sbjct: 226 FNKSQVLYGYPQAKESIYRL----------ESVIITEGYLDVIMLHQAGFTNAVATLGTA 275 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ L LL K +P+++L FDGD+ G++AA+KA L+ G VL G DP Sbjct: 276 LTKEHLPLLAKGNPKVILAFDGDNAGMQAAFKAASLLSIAKKQG---GVVLFEGGLDPAD 332 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ + L +PL+D + + + ++ + + ++ + ++ Sbjct: 333 MVKNSEIEELKSLFDSPIPLIDYVLESIIKRYDLQNAAQKDDCLKEILEYLHQL-SPVIQ 391 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + RL + + K +Q + + SL + + Sbjct: 392 EEYKLWLSQRLAL---------------PAHLIQTKKPKAQNQSITKESL-RFSEASFYD 435 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L E ++ +++ + +L L + ++ ++ L + +E + + +++ Sbjct: 436 LPEKIIIKSVLENMELLGFVLDYLDPKMFRTQ--KEAYNKLLKNELEDPLLIGILLDEKI 493 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L +Q+ + + Y++ L+L ++ LL + ++ + Sbjct: 494 KPQDKEHLREQI--------IMVLYQHYDQERKALSYKKGLSLREKAFLLRKYQKYL 542 >gi|57234645|ref|YP_181296.1| DNA primase [Dehalococcoides ethenogenes 195] gi|57225093|gb|AAW40150.1| DNA primase [Dehalococcoides ethenogenes 195] Length = 590 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 137/624 (21%), Positives = 266/624 (42%), Gaps = 56/624 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 ++++ + I + IGQY + CPFH EK SF ++CF Sbjct: 5 VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C+ GD +F+ G F +++ LA AGV LP + + L + A Sbjct: 60 CNTGGDIFAFVMKKEGLDFKGALELLAEKAGVSLP--SQINPQIRDQRERLYEINLAAAQ 117 Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++H+ L + + + YL RG++ ++ F+LGYA L ++L+++ +++E +++ Sbjct: 118 YYHNLLLNSPQAESARSYLKSRGLNEQSLADFQLGYALPEWQGLYDYLKERSYTDEDLLK 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+ I + +DRFRN +I+PI + +GQ+ FG R + KY NSP+T LF+K Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFNKS 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LY A ++ + I+VEGYMD + Q G N V+ +GTALT+ Sbjct: 236 SLLYGLHLASASIR----------EKNQAIIVEGYMDAIMSHQGGFTNTVACMGTALTDR 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+ L+ + + ++L D D G A +AID + + + G+DPD IR Sbjct: 286 QIALVKRQTKHLILGLDADSAGEEATLRAID---YENQIESEIRVAVPEGGKDPDEIIR- 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + +++++ + PL+D +++ + ++ +A L L I+ ++D + +Y Sbjct: 342 HAPQTWQEILDNARPLLDYIFEHSQKGLDLSSAAGKAGLTDRLLPIISKMEDGVRQSHYL 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + + R ++ + +++ ++ L + + K + K E Sbjct: 402 GKLAEMVS----------TSQNRILERMKKLKNETRITKVLEKEAPSKTVSAAKNPALEE 451 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L P + +L + + ++L + Q + Sbjct: 452 YALSLLFKSPEL-SRFAGKLHPEYLEIPQYRELLAVY---------------SQSAEKDN 495 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 L + R+ D + NI D L R R L ++ + + ++ Sbjct: 496 LRAALDENLREYYDNLMNKNPANDNIEDKFYDLC----LRLRERYLRNLAVKLNQALNEI 551 Query: 606 TAKGEAEKTAILISILHEVHIQIH 629 ++ E + L +V+ ++ Sbjct: 552 -SQPETAEYQTLNDQCVKVNEELR 574 >gi|283780467|ref|YP_003371222.1| DNA primase [Pirellula staleyi DSM 6068] gi|283438920|gb|ADB17362.1| DNA primase [Pirellula staleyi DSM 6068] Length = 613 Score = 294 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 143/628 (22%), Positives = 241/628 (38%), Gaps = 37/628 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + + I +++G Y++ R + CP+H++ PS N + + C+ C Sbjct: 8 EQVRQAVSIVDVVGSYMELRRSGR-----LFVGLCPWHNDSKPSLQVNPDRQTWKCWVCD 62 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIEVAT 125 + GD SF+ GC F E++ LA AGV L P + L+ E A Sbjct: 63 IGGDIFSFIMQKEGCDFREALTMLADRAGVKLVEQQHSKPVEPGSPNDKNTLLACTEWAR 122 Query: 126 DFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 +H L++ Y+ ERGI +I F +GYAPD L + R FS + Sbjct: 123 QQYHECFLRSEIAAAARDYVRERGITDESIRKFSIGYAPDQWSWLIDRARTARFSPAVLE 182 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS---KGESVKYLNSPETIL 241 GL T YDRF+ RLIFPIR G+ IAFGGR L + ++ KY+NSPET L Sbjct: 183 ATGLAGKS-ERGTHYDRFKGRLIFPIRDPLGRPIAFGGRILPGASQADAAKYINSPETRL 241 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K +NLY A + KS + +VEGY DV+ Q G++NVV+ LGTA Sbjct: 242 FSKSENLYALDIAKEVVSKS----------RSLTVVEGYTDVIMCHQYGLKNVVAVLGTA 291 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L ++L+ + + + L DGD+ G R + ++L + + + L DP Sbjct: 292 LNSRHIQLIRRFADSVTLLLDGDEAGQRRTNEILEL---FVSSQLDLRILTLPDEYDPAE 348 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ G +L+ ++ ++ + + A L+ + + Sbjct: 349 ILQEKGGDEVRRLLATAVDALEHKIRLAIQGIDPVRDTHLAN--KALEGILTLLAKGVDP 406 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + RL+Q+ + + K + Sbjct: 407 ANAADTTALRLKQILARLARVFRLDDLDIATRFKQLQPKTAKLETTKPITAAEYQLASIP 466 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 RE+ LL + H ++ EL+D+ + ++++ I + Sbjct: 467 PRESELLEIMALHEELVPIALGELSDVDITSQAAREVFVAYREMEESGGSLEFGAILASI 526 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 LL L + S + D + L + R R+ E+ Sbjct: 527 ENPALKSLLAGL------VEVASQKEPKALHDAPTRMRAVLNSF-RHHQKQRELLATEEA 579 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIH 629 +A + E ++ L + Q Sbjct: 580 LASKQMSEDEEV--DVLKQLIDAKRQQQ 605 >gi|325068973|ref|ZP_08127646.1| DNA primase [Actinomyces oris K20] Length = 432 Score = 293 bits (750), Expect = 5e-77, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 198/447 (44%), Gaps = 42/447 (9%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + +++G++V G CPFHDE+TPSFH G+++CF C G Sbjct: 2 RERARLEDVVGEHVTLKSAG----VGSLKGLCPFHDERTPSFHVRPQLGYWHCFGCGEGG 57 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIRLIEVATDFF 128 D ++F+ + F E+V+ LA GV L + ++ + L+ +A +F Sbjct: 58 DVITFIEKIHHLGFAEAVEYLADRTGVQLRYEEGGAVRRGVEPGTRQRLMDANRLAEAWF 117 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + +L RG D HA F +GYAP +L +LR G++E +++++GL Sbjct: 118 REQLATPEAQPGRDFLTARGFDRHAAAHFGVGYAPAGWDNLARYLRSSGYTEAELVDSGL 177 Query: 189 LID-GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPETILFHKGK 246 G + YDRFR RLI+PIR G + FG R L + + KYLN+PET +FHK + Sbjct: 178 CSRGGQDGRRVYDRFRGRLIWPIRDVTGATVGFGARKLSEEDQGPKYLNTPETPVFHKSQ 237 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY A + +S R I++VEGY DV++ +GV V++ GTA Sbjct: 238 VLYGLDLAKREVARSHR----------IVVVEGYTDVMAAHLSGVTTAVATCGTAFGADH 287 Query: 307 LRLLWK--------------------LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 +R++ + ++ FDGD G +AA +A Sbjct: 288 VRVVRRLLGDVDDPAAGVVTGQGREARGGEVIFTFDGDAAGQKAALRAYAEDQRFAT--- 344 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + G DP G + +L+ +PL + + + + +T + R Sbjct: 345 QTFVAVDPGGLDPCDLRMKEGDSGIPRLLSRRVPLFEFVIRTSLSHLDLDTSEGRVRGLR 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + I+D+ L+ Y++ + L Sbjct: 405 SAAPVVAGIRDRALKREYTRRLAGWLG 431 >gi|320333568|ref|YP_004170279.1| DNA primase [Deinococcus maricopensis DSM 21211] gi|319754857|gb|ADV66614.1| DNA primase [Deinococcus maricopensis DSM 21211] Length = 586 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 162/630 (25%), Positives = 267/630 (42%), Gaps = 57/630 (9%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +D+ + I+ LIG+YV G CPFH EK+PSF + +G++YCF C Sbjct: 5 EDVRARLNIAELIGEYVQLTPAGR----GRLKGLCPFHKEKSPSFQVDVEQGYFYCFGCK 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD SF+ SF +++++LA GV + EK DL + A ++F Sbjct: 61 AGGDAFSFVQRAENLSFGDALRKLAERVGVAVETRYG-----EKQSRDLYDVNAFALEYF 115 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L YL RG+ IE F+LG+AP+ L + R +G E +++EAGL Sbjct: 116 REHL----GGEGLAYLRRRGLTDETIERFELGFAPEGWDGLLKRARTRGVPERQLLEAGL 171 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 LI+ + YDRFRNR++FPIR G+++ FGGR L E KYLN+PET +F KG+ L Sbjct: 172 LIEN-ETGRVYDRFRNRVMFPIRDHLGRLVGFGGRVL-GDEKPKYLNTPETDVFKKGELL 229 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y A ++ +++VEGYMDV+++ QAG V++LGTALT Sbjct: 230 YGLDKARGQVR----------DGGELVVVEGYMDVIAMQQAGFTTAVATLGTALTAEHAT 279 Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 LL + R+ L FD D+ G +A +D V+ V + + G+DP I Sbjct: 280 LLERQGVRRLALLFDRDEAGQKATLAGLDQVVGAR---LNVRALSVPNGKDPADAILAGE 336 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 A + L V + E T D + ++ + L + ++ + Sbjct: 337 MDALRAALAGGLDEVAYRVQSAVEAYGVATSDGKRKVLMSLLPRMQNLDPLDEGASRMRD 396 Query: 428 IR-DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 I +RL + + K + L ++ L + RE A Sbjct: 397 IACERLGIKPEALLD--------------WISSKAKRKTLSKTQLAGMSTQRHDEDRELA 442 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 LL L+ P +L + + + N ++K+ + EE+ + + Sbjct: 443 LLKQLLIDPTLLAKLDGHVP---FHNETVRKV------VLAARGTRRSEEVLEVFRGQPE 493 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLLSRQKEEIEKQI 602 +LL +L + RDAG S + + R Y + + L + + ++KQ+ Sbjct: 494 EQLLIRLMFEARDAGAHSRSAAEQYEEKRTAYAAQATDEIQIALSIDQLRAEVDALKKQV 553 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + + + + + Sbjct: 554 LGAPPAEQLGLLRQISELQRAIEAEKRARK 583 >gi|160915038|ref|ZP_02077251.1| hypothetical protein EUBDOL_01046 [Eubacterium dolichum DSM 3991] gi|158432837|gb|EDP11126.1| hypothetical protein EUBDOL_01046 [Eubacterium dolichum DSM 3991] Length = 586 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 143/620 (23%), Positives = 254/620 (40%), Gaps = 44/620 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I ++ I ++IG+Y+ R+ N Y CPFHD+ PS + K Sbjct: 3 RLREEEINEIRAKADIVDVIGRYLPLTRKGKN-----YVCTCPFHDDHNPSMSVSSDKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRL 120 Y CF C+ G+ +F+S SFIE+V ++A G+ + ++ Q L R Sbjct: 58 YKCFVCNAGGNVFTFVSNYEKISFIEAVYKVADYTGISIEQPLQLPQRNVDPQLAPLHRA 117 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +F H+ L + + YL R ID I+ F LGY P + SL + L K S+ Sbjct: 118 CGEAIEFTHYQLDTPQASDVKKYLTSRLIDDSIIKKFSLGYNPPN-DSLYKFLHAKKHSD 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + +I+AGL D F R++ PI + G+ + F R + KY+N+ ET Sbjct: 177 DTLIKAGLCRLTAVGMK--DVFAGRIMIPIHNEFGEPVGFSARRFVENSDAKYINTSETD 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KG ++N+ A + +K+ + ILVEG MDVL+ + G+ N +++LGT Sbjct: 235 IYVKGNLIFNYHRAKSEARKAKKA----------ILVEGAMDVLAFEKVGMSNALATLGT 284 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T+ QLRLL +L I++ +DGD G A Y L V G DPD Sbjct: 285 ACTKEQLRLLKQLHVPIIVGYDGDRAGQSATYAFGKLAREAQ---IPFEIVDNKYGLDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I +GK ++ +++ +D L+ + ++ E + + I +KD Sbjct: 342 EIIEEFGKEELRQISEKTISWIDFLFTFLMTKYNLENYTQKKEFAMEMAEEIYLLKDDFE 401 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y +R+ + K ++ + +S L K + Sbjct: 402 KESYYIRLRELTDFDM--------------HGEEAKKQPKAKTEYVKRSYLAFPKSGRNH 447 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E +L ++N A +EL + ++ +L ++ + + ++ + Sbjct: 448 --AEFEILSQMLNGVAASNHYKEELGFL--QDDTCNRLALYIIDYYRTHRKLEVADLFDK 503 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + E +LL + + + + ++ L L R R+L+ Q +I Sbjct: 504 IKEEAVKQLLLDVSSWELGKAEVNLKV---LNEAIHKVKECL-LDDRIRILNEQIAKIHD 559 Query: 601 QIAQVTAKGEAEKTAILISI 620 + + E Sbjct: 560 PMEKARLAVEKNGLIKEKEE 579 >gi|297180572|gb|ADI16784.1| DNA primase (bacterial type) [uncultured gamma proteobacterium HF0010_11B23] Length = 581 Score = 293 bits (749), Expect = 6e-77, Method: Composition-based stats. Identities = 143/619 (23%), Positives = 273/619 (44%), Gaps = 47/619 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + P+DFI L+ I ++I YV ++ N Y CCPFH+EKTPSF + K Sbjct: 4 SIPKDFIDRLVEDSDIVSVINHYVSLSKKGNN-----YTCCCPFHEEKTPSFVVSPQKAI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 ++CF C G+ L+F+ G SF+E+V++LA + V +P + + + + Sbjct: 59 FHCFGCGAGGNVLTFIKDHEGLSFVEAVEKLAELNNVTVPRENTFG---NNDFSKIHEIN 115 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E +++ +LK+ ++K + YL ERGI + FK+G+A ++ L + L+ K +E Sbjct: 116 EFVANYYFEALKDQKNKSIVEYLKERGISGQTAKNFKIGFADFNQNELLKILQSKFSEKE 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L N Y RNR+ FPI +S G+ I FGGR + KYLNS ++ Sbjct: 176 ILESGNFLK---NDKGFYPFLRNRVTFPIFNSSGKTIGFGGRV-TDDSLPKYLNSKDSKF 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY F A + + I+ EGYMDV+ L + G+ N V+SLGTA Sbjct: 232 FNKTRELYGFNNAKKDHK-----------TDDFIVTEGYMDVVMLSEYGINNAVASLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 ++ + ++KL +I CFD D+ GL+AA++A + L ++I V F+ L G DPDS Sbjct: 281 FSQNHMSSMFKLRRKITFCFDSDEAGLKAAWRAFQISLKNVIDDKTVRFLFLPEGYDPDS 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ G+ F K + ++ L ++ + ++P++ ++ K + + + L+ Sbjct: 341 FVKEKGEQEFYKKLDRAMVLESFAFQYLKRGKKLDSPEDIRQIIFEFKKLLPLVTSEMLK 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 L + + E + + K + + + Sbjct: 401 ETLMTKFSSELNINKEILMKEDRPKKKTYVKKVLKSKKAAFENEFLLLIFLLENHKNSI- 459 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + QE ++ + + + S E ++ Sbjct: 460 -------------NDLSQEFFKFIETTK---------RDEITSFQEVINQIKTENSTRKE 497 Query: 542 CERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ++ L+ Q + ++A ++ + + + L + + LS++++E + Sbjct: 498 SPLFAKAMMIDLNLSQDEVISEFIRASDAIRLEFDELFAEYLIILANKKELSQERKENLQ 557 Query: 601 QIAQVTAKGEAEKTAILIS 619 ++ + ++ ++ + Sbjct: 558 KLLNLRDNNSIQEEELIQN 576 >gi|255014263|ref|ZP_05286389.1| DNA primase [Bacteroides sp. 2_1_7] Length = 705 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 160/709 (22%), Positives = 283/709 (39%), Gaps = 104/709 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGSDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS----GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R Y + ++ Q + E + + S Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ----------------- 516 + + EA L P ++ E + Sbjct: 463 FPGYQPYTQEEANTLPPENIPPPPPEDYIPEKEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 517 ----KLWSFLFSDF---------VEQKYFLPEEIHQRLC-----------ERGFGELLKQ 552 L ++ E + + + F ++L + Sbjct: 523 AYELALLRYIVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQMLDE 582 Query: 553 LDRQVRDAGLWS-----ATTEANIVDVRQGYQ----QALALYKRFRLLSRQ--------- 594 ++ G + A + NI + Q + +FR L ++ Sbjct: 583 AAEHCQNEGFMASRYFLAHPDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDYLVP 642 Query: 595 --------------KEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 ++I+ +I + KG+ E+ L+ + L+E+ Sbjct: 643 REIYSMKDAYILYKIKDIQAKIKEAQNKGDMEQIFDLMKQNAHLNEIKN 691 >gi|206896076|ref|YP_002247041.1| DNA primase (bacterial type) [Coprothermobacter proteolyticus DSM 5265] gi|206738693|gb|ACI17771.1| DNA primase (bacterial type) [Coprothermobacter proteolyticus DSM 5265] Length = 569 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 146/622 (23%), Positives = 237/622 (38%), Gaps = 62/622 (9%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + ++ I ++ +YV + N Y+ CPFH EKTPSF N KG + CF C Sbjct: 10 IRNNVDIVEVVSRYVSLKKVGRN-----YFGLCPFHSEKTPSFSVNPGKGIFKCFGCGEG 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + FLS + S+ E+V+ LA G+ + +++++E A + Sbjct: 65 GDVIKFLSKIENVSYREAVKMLATEVGISVDENS--------ETEKILQVLEEARRLMNG 116 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L YL RG+ + I +F LGY P +R L++ L +KGF+ + + +AGL Sbjct: 117 VLLTRSGALALSYLSNRGVKAETIGIFGLGYDP-TRDFLQKALIRKGFTADLVRKAGLTN 175 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 N D F R++FPI + + I FG R+L + VKYLN+ ET F K + LY Sbjct: 176 SIGN-----DFFGRRVVFPIENLSRRTIGFGARSLDETNPVKYLNTGETATFKKSRVLYG 230 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 AL + K + +ILVEGY D + L Q G NVV+ LGT +T Q RLL Sbjct: 231 ISQALPSIDK----------TKSVILVEGYFDAVVLSQEGFSNVVAILGTTVTPEQSRLL 280 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + R D DD G+ AA K L + LL G DPD Sbjct: 281 SRKVRRATFLLDSDDAGIMAALKG---CFVLLSQNIEPSVALLPEGVDPDEMALRSRNKL 337 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 E L + +P+ L +L+ Sbjct: 338 SEILSAPINLFKFLELCAARYFGGMRSPEFLEALSQNLRGLTT---------------SP 382 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L+ + + + + R K + V K E + Sbjct: 383 LLEMALNELGEKMGLETKTLQSFLSSRGAKLERSEEDIYNAVSKKKPVDVESIEEQMAKL 442 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 LIN P + ++ L+++ + E + L +L+ Sbjct: 443 LINTPELSTILVED-EYFYPYTPGLREVLDAIKDW---DPERDTAEKYVELFPPYLRDLV 498 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++ + + ++ L + R + L ++ Q+A+ +G Sbjct: 499 EESMSENF----------GTYQQKEKMLKELLGRW-RVKDLDNYINKLSSQLAESHDEGL 547 Query: 611 AEKTAILISILHEVHIQIHQIE 632 E+ ++S E+ Q+ +E Sbjct: 548 LEQLQEVLSERDEISRQLQGLE 569 >gi|298376268|ref|ZP_06986224.1| DNA primase [Bacteroides sp. 3_1_19] gi|298267305|gb|EFI08962.1| DNA primase [Bacteroides sp. 3_1_19] Length = 705 Score = 292 bits (748), Expect = 9e-77, Method: Composition-based stats. Identities = 157/712 (22%), Positives = 280/712 (39%), Gaps = 110/712 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +L I +++ ++V +R N Y CPFH +K+PSF+ + SK Sbjct: 2 IDQPTIDRILDAANIVDVVSEFVTLRKRGIN-----YVGLCPFHSDKSPSFYVSPSKNIC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIRL 120 CF+C G + F+ S+ ++++ LA + + + ++K+ + ++ + Sbjct: 57 KCFACGEGGTAVHFIMKHEQLSYFDALRFLAKKYNIEIQERELTEKEKQIRSDRESMLIV 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A +F L + + Y ERG+ I F+LGY+ D R +L + + G+ Sbjct: 117 NSWAGQYFSTLLHEHVEGKSVGMRYFAERGLREDIIRKFQLGYSLDQRDALYKTAIKAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL+I ++ DRFR R+IFP+ + G+V+AFGGR L K E KY+NSP Sbjct: 177 KKEFLEKTGLVI-AYDNGNVNDRFRGRVIFPVHTLSGKVVAFGGRVLKKDEKTAKYVNSP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K R LVEGYMDV+ + Q GV+NVV+S Sbjct: 236 ESEIYHKSNELYGIYFAKQAIMKQDR----------CFLVEGYMDVIGMHQVGVENVVAS 285 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +DGD G++AA + ID+ L G V VLL GE Sbjct: 286 SGTALTQGQIRLIHRFTNNITVLYDGDAAGIKAALRGIDM---LLEEGMNVKVVLLPAGE 342 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF R + + F + I ++ + + + P +R+ L + + I D Sbjct: 343 DPDSFARSHSASEFAEFISQNETDFIRFKTKLLLAEAGSDPIKRSALISDIIRTVAIIPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHS----GYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R Y + ++ Q + E + + S Sbjct: 403 NIARSVYIRECSTTMEIDEQVLLNEVNKIRLNKEENQAAKSVRNTPPVQSPVNTIPEYPD 462 Query: 474 GKLSKKPSLREAALL--------------------------------------------- 488 + + EA L Sbjct: 463 FPGYQPYTQEEANTLLPENIPPPPPEDYIPEEEAGPPPTPPYEVPTAPNIQVQPKRSPFE 522 Query: 489 ---LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L+ + + + + D + + + + ++ Sbjct: 523 AYELALLRY---IVRYGERVLYDYVDEETNEHVIMRVADYIRFDLERDDLTFYTPAFKQM 579 Query: 546 FGELLKQLDRQ-VRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLLSRQ------ 594 E + + + + A + NI + Q + +FR L ++ Sbjct: 580 LDEAAEHCQNEGFMASRYFLAHPDPNISRLAANLISDKYQLSKYHTKFRELEQEEDKLDY 639 Query: 595 -----------------KEEIEKQIAQVTAKGEAEKTAILI---SILHEVHI 626 ++I+ +I + KG+ E L+ + L+E+ Sbjct: 640 LVPREIYSMKDAYILYKIKDIQAKIKEAQNKGDMELIFDLMKQNAHLNEIKN 691 >gi|219681438|ref|YP_002467823.1| DNA primase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471113|ref|ZP_05635112.1| DNA primase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624281|gb|ACL30436.1| DNA primase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 577 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 154/600 (25%), Positives = 269/600 (44%), Gaps = 50/600 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI +LL I LI ++ + N Y CPFH +KTPSF ++ K F Sbjct: 4 KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C+ G+ + FL SFIES++ LA I GV +P + + L L+ Sbjct: 59 YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E + ++ YL RGI+ + I+ F +G++ + + E+ Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++ + I D + YDRF+ R+IFPI+ + G++I FGGR+L S KYLNSPET + Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K +Y + + K + ++++VEGY+DV++L Q + VS LGT+ Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T ++LL+K + I+ C+DGDD G AA+K + L ++ + F+LL EDPD+ Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNKEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR G+ F+K I ++ + +K +N + ++ D++ L +H IN I +R Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y Q + + L + + K Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P++ + LA + LQ ++ + + ++ Sbjct: 448 ---RTLIGLLVQNPSLAK-----LAPVTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQL 499 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + +LK L R D + T+ +D+ + +R L+++++++ Sbjct: 500 LELYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557 >gi|15616681|ref|NP_239893.1| DNA primase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133953|sp|P57164|PRIM_BUCAI RecName: Full=DNA primase gi|25298046|pir||C84936 DNA primase [imported] - Buchnera sp. (strain APS) gi|10038744|dbj|BAB12779.1| DNA primase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 577 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 151/598 (25%), Positives = 271/598 (45%), Gaps = 46/598 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI +LL I LI ++ + N Y CPFH +KTPSF ++ K F Sbjct: 4 KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C+ G+ + FL SFIES++ LA I GV +P + + L L+ Sbjct: 59 YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E + ++ YL RGI+ + I+ F +G++ + + E+ Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++ + I D + YDRF+ R+IFPI+ + G++I FGGR+L S KYLNSPET + Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K +Y + + K + ++++VEGY+DV++L Q + VS LGT+ Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T ++LL+K + I+ C+DGDD G AA+K + L ++ + F+LL EDPD+ Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR G+ F+K I ++ + +K +N + ++ D++ L +H IN I +R Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y Q + + L + + K Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQ 539 L+ L+ +P++ + +++ N +++ ++ + + ++ + Sbjct: 448 ---RTLIGLLVQNPSLAKLVP---VTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQLLE 501 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +LK L R D + T+ +D+ + +R L+++++++ Sbjct: 502 LYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557 >gi|219681994|ref|YP_002468378.1| DNA primase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621727|gb|ACL29883.1| DNA primase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085800|gb|ADP65882.1| DNA primase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086375|gb|ADP66456.1| DNA primase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086953|gb|ADP67033.1| DNA primase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 577 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 154/600 (25%), Positives = 269/600 (44%), Gaps = 50/600 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ FI +LL I LI ++ + N Y CPFH +KTPSF ++ K F Sbjct: 4 KIPKYFITELLSRTNIIELINTRLELKKYGKN-----YQTNCPFHHDKTPSFTVSNEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 YYCF C+ G+ + FL SFIES++ LA I GV +P + + L L+ Sbjct: 59 YYCFGCNAHGNAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLM 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E + ++ YL RGI+ + I+ F +G++ + + E+ Sbjct: 119 EKICKLYKKNINVTHLANK--YLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQ 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +++ + I D + YDRF+ R+IFPI+ + G++I FGGR+L S KYLNSPET + Sbjct: 177 ELLINNI-IATDKNGYIYDRFQGRIIFPIQDNHGRIIGFGGRSL-NDMSPKYLNSPETDI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K +Y + + K + ++++VEGY+DV++L Q + VS LGT+ Sbjct: 235 FYKRKQIYGLYQVIKKCSKPV----------YLLVVEGYIDVITLTQYNIDYAVSILGTS 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 T ++LL+K + I+ C+DGDD G AA+K + L ++ + F+LL EDPD+ Sbjct: 285 TTTEHIQLLFKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILLPNQEDPDT 344 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 IR G+ F+K I ++ + +K +N + ++ D++ L +H IN I +R Sbjct: 345 IIRKEGREKFQKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINTISSDTIR 404 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y Q + + L + + K Sbjct: 405 IYLRQILARMIGILDDNQFEKFLYEKETKNTQKTYFQIKRTPM----------------- 447 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQ----KLWSFLFSDFVEQKYFLPEEI 537 L+ L+ +P++ + LA + LQ ++ + + ++ Sbjct: 448 ---RTLIGLLVQNPSLAK-----LAPVTMKFKNLQIKGLSIFLEILQTCRDNPNIHTGQL 499 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + +LK L R D + T+ +D+ + +R L+++++++ Sbjct: 500 LELYRNTTIINVLKILARW--DHMIIQKETQNMFLDLLMNIHDKILEKRREYLIAKERKK 557 >gi|46580199|ref|YP_011007.1| DNA primase [Desulfovibrio vulgaris str. Hildenborough] gi|120602414|ref|YP_966814.1| DNA primase [Desulfovibrio vulgaris DP4] gi|46449616|gb|AAS96266.1| DNA primase [Desulfovibrio vulgaris str. Hildenborough] gi|120562643|gb|ABM28387.1| DNA primase [Desulfovibrio vulgaris DP4] gi|311233813|gb|ADP86667.1| DNA primase [Desulfovibrio vulgaris RCH1] Length = 572 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 163/621 (26%), Positives = 273/621 (43%), Gaps = 65/621 (10%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + + + ++ +YV+ R G + A CPFH E PSF N+ +GF+YCF Sbjct: 7 SVVQAIKSRLNLVDIARRYVELRRAG-----GRWMAPCPFHQETKPSFSINEEEGFFYCF 61 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEV 123 C GD F + G F E++++LA AGV L DP+ ++++ ++ +R+ +V Sbjct: 62 GCQASGDLFDFYGRINGLDFRETLEQLAEEAGVALDDWKPDPRAQQEQSLRRQCLRMYDV 121 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 A F +L + Y+ R I IE F+LG++ SL + LR+ GF++ Sbjct: 122 ARAHFVGNLAKREGQECRDYMQRRAIAPEIIESFELGWSLREWQSLADTLRRAGFAQGLA 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 ++AGLL +S +YDRFR RLIFPI+S GQVIAFGGR +++ + KY+NS ++ ++ Sbjct: 182 VKAGLL-ATSDSGRAYDRFRGRLIFPIKSLAGQVIAFGGRIIAEDDQAKYINSSDSPIYK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG +LY + A + + +L EGYMDVL+L Q G N V LGTALT Sbjct: 241 KGDHLYGLYQARRAI----------SQHKVAMLTEGYMDVLTLHQFGYNNAVGVLGTALT 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 Q++ L + L FDGD+ G +AA ++ ++ L+ G R VLL +GED DS + Sbjct: 291 PEQVKRLSGFCSTVELLFDGDNAGRKAALRSCEM---LLVRGMRCKVVLLPQGEDIDSLL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G+ AFE + E+ +D + + D ++ +L Y Sbjct: 348 HGAGRDAFESIRNEAPDGLDFCMRSLAAQAPRDMLDWTKGFL-------AQVEQPELLSY 400 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + L + RD + ++ K +++ + R Sbjct: 401 YITRLAGGLGLNEAEL-----------------RDSLAERVKAHAAAPAKKPVARGHASR 443 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 + ++ + +P L + + AD+ + LW + E Sbjct: 444 DREIMTFAVRYPHCLPQLQEAGADLVLGTEWARTLWDKIERHGAE--------------- 488 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602 E++ L + + + T E +D +G A+ L Q + Sbjct: 489 ----EVVDHLSEREKTFWIRCRTGEVPPLDNEEGELAAVRHMLADMQLKVQSASCMAALR 544 Query: 603 AQVTAKGEAEKTAILISILHE 623 Q+ + L+ L E Sbjct: 545 QQMGGVSDPAADIELLRALQE 565 >gi|108757060|ref|YP_633356.1| DNA primase [Myxococcus xanthus DK 1622] gi|1709770|sp|P50070|PRIM_MYXXA RecName: Full=DNA primase gi|710342|gb|AAB60207.1| primase [Myxococcus xanthus] gi|108460940|gb|ABF86125.1| DNA primase [Myxococcus xanthus DK 1622] gi|1586811|prf||2204381C dnaG gene Length = 606 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 145/641 (22%), Positives = 255/641 (39%), Gaps = 63/641 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I+++L + + LI ++VD + ++ ACCPFH EKTPSF+ K FY Sbjct: 5 IPEHKIQEVLERVDLVGLISRHVDLKKAGR-----EWKACCPFHQEKTPSFYVVPEKRFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +C C GD +SF+ LG +F+++V+ LA GV L + + + + Sbjct: 60 FCHGCRASGDAVSFVQRYLGKTFLDAVRDLARELGVDLEAEQDPSMR---ERQQIKEATD 116 Query: 123 VATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A + F L + Y+ RG+ F LG+AP SL E ++ G E Sbjct: 117 QAAEHFRAMLWQQDEGRSARAYIASRGVSDETAMAFGLGWAPLEWASLTERFQKLGMLEW 176 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 AGL++ ++ YD FR+R++ PIR+ G+ IAFGGR + E KYLNS E+ L Sbjct: 177 AAK-AGLVLKRNSGDGYYDFFRSRVMVPIRAPEGRPIAFGGRLIGADEGPKYLNSRESRL 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 ++K + L+ + + ++K +LVEGY D L L Q GV++ V+ T Sbjct: 236 YNKSETLFGMDQSRDEIRK----------RKAAVLVEGYFDALGLHQVGVRHAVALCSTN 285 Query: 302 LTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 LT +++L + R ++L DGD GL A + L L G LL +G+DPD Sbjct: 286 LTAGHMQVLKRAEARELILLLDGDSAGLAAVER---LSGPLLAAGATARVALLPQGDDPD 342 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +F R G+ E+L+ + PL L+ + +E+ LK + + + Sbjct: 343 TFARREGQEGVERLLEGAHPLTSHLFASLLPEGKAASFEEKMAALERLKPVVGQVPVGLV 402 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R A+ + + R + P + + L K P Sbjct: 403 RATLFSAVAEHFGW----RPADVEAALRSKVPLPKPAGGDAPPSSPNRPAPP---LEKPP 455 Query: 481 SLREAALLLTLINHPAILQ----EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E + ++ P ++ EL+ + + Sbjct: 456 PALECFYVGAVLKEPRLMARDTFRVCDELSHMGL---------RMALAHATSGHGANDAL 506 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + R + A + + + + + + + + Sbjct: 507 FESS----------EAVKRGIESALRQLPSEPVPLEAAFLSICREIMVRR----IDERLV 552 Query: 597 EIEKQIAQVTAKGE-AEKTAILI---SILHEVHIQ-IHQIE 632 I++ Q + E+T L+ L + + + +++ Sbjct: 553 YIKRATEQTPGAFDLTEETRQLLVERVELLALKKRVLEELK 593 >gi|257414235|ref|ZP_05591949.1| DNA primase [Roseburia intestinalis L1-82] gi|257200739|gb|EEU99023.1| DNA primase [Roseburia intestinalis L1-82] Length = 354 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 115/344 (33%), Positives = 176/344 (51%), Gaps = 21/344 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y D I+++ I ++I QYV ++ + Y+ CPFH+EKT SF + +K Y Sbjct: 21 YSDDIIEEVRSRNDIVDVISQYVRLSKKGS-----TYFGLCPFHNEKTGSFSVSPNKQMY 75 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF C G+ +FL +F E+++ LA AGV LP + ++++ + L+ + Sbjct: 76 YCFGCGAGGNVFTFLMEYENFTFGEAMEALADRAGVELPKQEYTSAQRQEADKRARLLEI 135 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +F+ L+ R R Y +R + ++ F LGY+ L +LR+KG+ + Sbjct: 136 NKEAAKYFYMLLRGERGARALSYFRKRELSDETMQKFGLGYSDQYSDDLYRYLRKKGYED 195 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + E+GL + D YD+F NR +FPI +VI FGGR + KYLNSPET Sbjct: 196 DILKESGL-VSIDERRGGYDKFWNRAMFPIMDVHNKVIGFGGRVM-GDGEPKYLNSPETK 253 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K +NLY A ++L EGYMDV++L QAG N V+SLGT Sbjct: 254 IFDKSRNLYGLNFAR------------STKKPQLLLCEGYMDVIALHQAGFDNAVASLGT 301 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 ALT LL + + + L +D D G++AA +AI Sbjct: 302 ALTSGHANLLKRYTKNVYLTYDSDGAGVKAALRAIPYFKRSRNH 345 >gi|197121173|ref|YP_002133124.1| DNA primase [Anaeromyxobacter sp. K] gi|196171022|gb|ACG71995.1| DNA primase [Anaeromyxobacter sp. K] Length = 647 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 155/642 (24%), Positives = 249/642 (38%), Gaps = 48/642 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + + +IG++++ R + C FH E+TPSFH + Sbjct: 17 IPDAVIDQIRERVDVVAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHF 71 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLI 118 C+ C GD +FL L G F E V+ LA GV +P + K K + +++ Sbjct: 72 KCYGCGAYGDVFTFLQRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVL 131 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ L + YL+ RG+ ++ F+LG A D+ L L++KG Sbjct: 132 AASDAAARYWAARLASRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGI 191 Query: 179 SEEKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + AGL+I+ + +YDRFRNRL+FPI GQVI FGGR L + KY+N+P Sbjct: 192 GVAALQRAGLVIERERDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGDEQGAKYINTP 251 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ K K LY A ++K + +LVEGY DV+ L Q GV V+ Sbjct: 252 ETPLYKKSKVLYGLDLARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAV 301 Query: 298 LGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 GTALT + LL + + + FDGD GL A KA + + G + Sbjct: 302 CGTALTPEHVELLSRCDCREVTVLFDGDVAGLAAPAKAAQALFPAGMAGKVAVLPSAAGK 361 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNC 411 DPD + R G+ + L+ ++PL + L R E + P + + L+ Sbjct: 362 SDPDEYARANGRAGVDALLTAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEPF 421 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + + + R + I RL TE S R A S Sbjct: 422 VRMMPEGLARSVFEDMIARRLDLDPGALRTELSAERRRPGVPAPAPTGHPERPSGAPSRP 481 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW----------SF 521 + A + L+ P + LA ++ + Sbjct: 482 TPSAGPARGGPPAHARVRVLL--PGPAADALALLAAFPDLGPVAEEERLPQLLPPGPLAD 539 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L D V L + + RL ++ V E ++R+ +A Sbjct: 540 LARDLVRGPVALDDAL-ARLSSGADEATARRFRTLVGPGR---PRPEEAERELRKAAVKA 595 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 L ++ E +++ + + A+ + L Sbjct: 596 T-----LERLDQEYGEALRRVTKAGSAA-ADGLDVTAQRLIN 631 >gi|269792834|ref|YP_003317738.1| DNA primase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100469|gb|ACZ19456.1| DNA primase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 564 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 157/605 (25%), Positives = 246/605 (40%), Gaps = 60/605 (9%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I I +L+ Y+ +R Y A CPFH E+TPSF + + Y+CF C Sbjct: 8 IKERIDIVDLVSSYIPLRKRGR-----SYVALCPFHSERTPSFTVSRERQTYHCFGCGKG 62 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD SF+ + F E++++LA +AGV L + ++E A FF Sbjct: 63 GDIFSFVMEMENLPFREALEKLAPMAGVQLDSGPG--------RRRSRDVLEEALRFFRD 114 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 +L + YL+ R +D A+E+F++G+AP S +LR+HL GFS E+++E GLL+ Sbjct: 115 ALASREGAYAAAYLERRRLDRRALELFEIGWAPASWGALRDHLSSLGFSREEMLEVGLLV 174 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 + S YDRFR R+IFP+R+ G+++ FGGR L GE KY+NSPE LF K K LY Sbjct: 175 E--GSKGPYDRFRGRVIFPLRNETGRLVGFGGR-LVDGEGAKYVNSPEGPLFEKRKFLYL 231 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 A + +++ R +ILVEGYMD + G V+ LGT+LTE Q ++ Sbjct: 232 LNMAKHAIRERGR----------VILVEGYMDAIRCHLTGFSEAVACLGTSLTEEQCGVI 281 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + + R ++CFD D G A + + ++ G V V L RG+DP Sbjct: 282 ARHADRCLICFDSDLAGQEATIRGMYMLNRL---GVDVEVVRLPRGKDP---------DE 329 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 + L + ++ + L Y + Sbjct: 330 LLSQPDGASDFRRALESTLPLPVFHAEVKGGGGSLKETGDLLDQL--ATLSPAYLKRHMP 387 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 R+ + E R + ++S+ + + L E L Sbjct: 388 RVAEALSLLPHEVE----REVAGRRSSKPRVAEPARREASVPPSRGDSREDLWEWGLCSL 443 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 L +P + Q E E + L L PEE+ R G L Sbjct: 444 LWTNPDLRSRQSPEALLPLLMREEARVLVLALL------CGERPEELESRWHRTGETVFL 497 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 L + + L +R R L R+ E ++ +IA+ + Sbjct: 498 SVLAKGGAFIDGLG---------LDDPLGAVLLNLERNRDL-RRYEALKVKIARGDQVTQ 547 Query: 611 AEKTA 615 + Sbjct: 548 EDLRE 552 >gi|295397566|ref|ZP_06807645.1| DNA primase [Aerococcus viridans ATCC 11563] gi|294974190|gb|EFG49938.1| DNA primase [Aerococcus viridans ATCC 11563] Length = 639 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 148/654 (22%), Positives = 274/654 (41%), Gaps = 58/654 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P + I ++ ++ I ++ Q+VD +R N Y+ CPFH+E+TPSF N+ K + Sbjct: 13 IPEEIINEVKNNVNILDVTSQFVDLQKRGRN-----YFGYCPFHEERTPSFTVNEEKQIF 67 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTD 116 +CFSC G+ F+ + G SF ++VQ++A V + + +Q Sbjct: 68 HCFSCGRGGNVFRFMEEIEGYSFPQAVQKVAEAGNVSISFDWSALDDGQQTTNYSSVQNR 127 Query: 117 LIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 LI + E F+H+ L N + YL +RG+ ++ +++G AP+ +HL Sbjct: 128 LIHIHEELRKFYHYLLMNTGNGHQGLIYLYDRGLSKETLDAYQIGIAPEDGRLAAQHLLN 187 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---- 231 K F+ E++ +G I + DRF R++FP+R+ +G+ + F GR L Sbjct: 188 KEFTTEELQNSG--IFVGDQDRLKDRFAGRVMFPLRNPQGKTVGFSGRILPGSNHYENHP 245 Query: 232 ---KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNSPET +F K L+N A N ++ + ++L EG+MDV++ Sbjct: 246 DAAKYLNSPETEIFEKNTFLFNLDLAQNEARR----------AKELVLFEGFMDVIASHN 295 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 GV N V+S+GT+LT Q++ + + S ++++ +DGD PG +A +AI+L+ ++ Sbjct: 296 EGVGNGVASMGTSLTSNQIKAIERTSKQVLIAYDGDKPGQKATLRAINLIQDQSSR-LKL 354 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRSFNTPDERAELEIH 407 N + + DPD FI+ YG + + + L + + + S T + + + Sbjct: 355 NVLAFEQNLDPDEFIQKYGGERYVNFVLNKRLSPIHFMRNYYRQEFSLETDNGKIQFINV 414 Query: 408 LKNCINHIKDQKLRYYYSQAIRD--------RLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 + I I+ R Y I + LQQL S + + Sbjct: 415 MLEAIAKIQRAIDRDIYVGEIAEDTGVSKDTLLQQLESYSPKNQSHQSYQADDHGNQQSF 474 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + + K + E LL L+ + D + ++E++ ++ Sbjct: 475 PANNTLQLGIPAATSKKKSQLEKSELLLLYRLLYNSETWLLIANR--DFHFQSSEVETVF 532 Query: 520 SFLFSDFVEQ----KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 L P + Q L L+ ++ E Sbjct: 533 MLLSDYRENNQNMDGELDPGDFLQALSGAEEQRLVAEVMNM-----------EVAPDIGE 581 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + + ++ + ++ +IA + + + ILI ++ QI Sbjct: 582 GEVEDLIYNIQIKGNIEQKMQSLDDEIAYAKSVDDFAQIGILIKQKIDLLKQIK 635 >gi|86157147|ref|YP_463932.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773658|gb|ABC80495.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C] Length = 647 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 151/639 (23%), Positives = 245/639 (38%), Gaps = 42/639 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I + + + +IG++++ R + C FH E+TPSFH + Sbjct: 17 IPDAVIDQIRERVDVVAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHF 71 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLI 118 C+ C GD +FL L G F E V+ LA GV +P + K K + +++ Sbjct: 72 KCYGCGAYGDVFTFLQRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVL 131 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A ++ L + YL+ RG+ ++ F+LG A D+ L L++KG Sbjct: 132 AASDAAARYWAARLASRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGI 191 Query: 179 SEEKIIEAGLLIDGDNS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + AGL+I+ + +YDRFRNRL+FPI GQVI FGGR L + KY+N+P Sbjct: 192 GVAALQRAGLVIEREKDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGDEQGAKYINTP 251 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET L+ K K LY A ++K + +LVEGY DV+ L Q GV V+ Sbjct: 252 ETPLYKKSKVLYGLDLARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAV 301 Query: 298 LGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 GTALT + LL + + + FDGD GL A KA + + G + Sbjct: 302 CGTALTPEHVELLSRCDCREVTVLFDGDVAGLAAPGKAAQALFPAGMAGKVAVLPSAAGK 361 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNC 411 DPD + R G+ + L+ ++PL + L R E + P + + L+ Sbjct: 362 SDPDEYARANGRAGVDALLAAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEAF 421 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + + + R + I RL TE S R A S Sbjct: 422 VRMMPEGLARSVFEDMIARRLDLDPGALRTELSAERRRPGVPAPAPAGHPERPAGAPSRP 481 Query: 472 VKGKLSKKPSLREAALLLTLI-------NHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + L+ +AD L + Sbjct: 482 TPPAGPARGGPAGHGRVRVLLPGPAADALALLAAFPDLGAVADEERLPQLLPPGPLADLA 541 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + E+ R+ L++ V E ++R+ +A Sbjct: 542 RDLVRGPVALEDALARMSAGADEATLRRFRTLVGPGR---PRPEEAERELRKAAVKAT-- 596 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 L ++ E +++ + + A+ + L Sbjct: 597 ---LERLDQEYGEALRRVTKAGSAA-ADGLDVTAQRLIN 631 >gi|33602138|ref|NP_889698.1| DNA primase [Bordetella bronchiseptica RB50] gi|33576576|emb|CAE33654.1| DNA primase [Bordetella bronchiseptica RB50] Length = 676 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 139/454 (30%), Positives = 227/454 (50%), Gaps = 27/454 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF E+V+ LAA G+ +P P+ + + + Sbjct: 57 HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + + YL +RG+ F LG++ R+ L Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++EAGL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG LY + A ++ +++VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGT+ T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + E++ L L + + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 + LR + + +Q ++ + Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARP 434 >gi|291296064|ref|YP_003507462.1| DNA primase [Meiothermus ruber DSM 1279] gi|290471023|gb|ADD28442.1| DNA primase [Meiothermus ruber DSM 1279] Length = 592 Score = 291 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 163/629 (25%), Positives = 281/629 (44%), Gaps = 53/629 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ + +PI L+G+YV G + CPFH EKTPSF ++ KG YCF C Sbjct: 9 IELIRSRMPIRELVGRYVALKPSGK----GVWKGLCPFHQEKTPSFQVSEDKGLCYCFGC 64 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD +FL + G F E+++RLA GV LP + + + ++++E+ + Sbjct: 65 KNGGDIFAFLQKIEGIGFREALERLAQETGVELPQFKG----RSSGRKEALQILELTQAY 120 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F +L YL ERG++ +IE F LGYAP S L HL+ G ++ +EAG Sbjct: 121 FRANL----SGSAERYLQERGLNPASIERFGLGYAPKSWDGLIRHLQGHGVDPQEAVEAG 176 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +L++ +DRFR+R+ FP+ G+++AF R L K ++ KYLNSPET LF K + Sbjct: 177 VLVE--REGRYFDRFRHRVTFPVLDPMGRIVAFTARALEKDDNPKYLNSPETALFKKSQL 234 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY + A + +++ R ++VEG DV++L Q G V+ LG++L+ Q Sbjct: 235 LYGYPQARSTIRERGRA----------VVVEGLFDVIALHQMGFTEAVAVLGSSLSGEQA 284 Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365 LL + + + L FD D+ G +A ++++L + V VLL G+DP + Sbjct: 285 HLLRRADAAELYLAFDADEAGRKATLQSLNL---EIARSFVVYAVLLEDGKDPGDLLLLP 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 GK FE + +LP V+ ++ P+ + ++ LK I + Sbjct: 342 DGKERFEVALEAALPEVEYRFEAAAAGLDLKRPEHKQKVLEALKP--RLISSEPF-DPVV 398 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + ++ ++ + Y + R R + L + L++K LRE Sbjct: 399 EKLKAKVISALELSPRALEDYLARAR--TPKRAASAAPDRTLGIGLARPDLTEKRLLREL 456 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 ++ L + P +E + + + L E + E+G Sbjct: 457 DVIALLYSVPE------EEFLQWALYVEDH---------TWPPEGSLLAEFMQAARSEQG 501 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 +L+ +++ A L ++ D + R R + + ++K AQ+ Sbjct: 502 KSRILRYFEQRGEGARLMDVLMKSPSFDQQNLEAHLNVALARVREVYYELR-LDKLKAQL 560 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +KT L + EV + IE++ Sbjct: 561 NSTADLDKTRTLTKEIQEV---LQAIEAE 586 >gi|33597398|ref|NP_885041.1| DNA primase [Bordetella parapertussis 12822] gi|33573825|emb|CAE38133.1| DNA primase [Bordetella parapertussis] Length = 683 Score = 291 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 142/488 (29%), Positives = 233/488 (47%), Gaps = 27/488 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF E+V+ LAA G+ +P P+ + + + Sbjct: 57 HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENRSPRQQAESARRKAEVSR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + + YL +RG+ F LG++ R+ L Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++EAGL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG LY + A ++ +++VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGT+ T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + E++ L L + + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + + +Q ++ + +A Q + Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADE 460 Query: 477 SKKPSLRE 484 + E Sbjct: 461 APPDWAFE 468 >gi|315023240|gb|EFT36250.1| DNA primase [Riemerella anatipestifer RA-YM] Length = 625 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 143/644 (22%), Positives = 268/644 (41%), Gaps = 54/644 (8%) Query: 18 SNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77 ++G+YV R +N Y PF DEKTPSF + SK + FS G +SFL Sbjct: 2 EEIVGEYVQLKRAGSN-----YKGLSPFVDEKTPSFIVSPSKQIWKDFSSGKGGTAISFL 56 Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK----IQTDLIRLIEVATDFFHHSLK 133 + S+ E+++ A G+ + ++ ++EK + L ++ EVA ++ + Sbjct: 57 MEIENFSYPEALRFAAKKYGIEIEEHQRELTEEEKTAQTEKDLLYKIHEVANHYYQKQIW 116 Query: 134 NARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 + + Y ER + I+ F+LGY+P + + E+ KG+++E + ++GL I Sbjct: 117 ETEEGKSIGLSYFKERELREDIIKKFQLGYSPIQKNAFTEYAISKGYTKEILEKSGLSIF 176 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNLYN 250 D + DRFR R+IFPI S G+V+ FG R L ++ KYLNSPET ++HK LY Sbjct: 177 TDYAPDGLDRFRERVIFPIHSFSGRVLGFGARILKSNVKTAKYLNSPETEIYHKSNVLYG 236 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 + + K + +LVEGYMDV++L QAG+++VV+S GTALT Q++L+ Sbjct: 237 LNQSKQAISKQ----------NLCLLVEGYMDVVALHQAGIEHVVASSGTALTTEQIKLI 286 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 +L+ + + FDGD G++A++++ID++L G + +L G+DPDSF R + K Sbjct: 287 KRLTENVTILFDGDAAGIKASFRSIDMLLSE---GMNIRILLFPDGDDPDSFSRKHPKEF 343 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 E I + + P +++E + + + + + Y + I + Sbjct: 344 VEDFIQNNAQDFINFKAEILLKDVEHDPIKKSEAIRDIVKSVAFVGNVLKQEIYLKEISN 403 Query: 431 RLQQLFQKYITEH--SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + Q E + + + P +L + K + E ++ Sbjct: 404 KFGLSEQSLFNELGIQQQVKEQQHLTPKKATPQPQPKLEVITSDFTKANTALLYLEEQMV 463 Query: 489 LTLINHPAILQEQYQ------------------ELADIRYDNNELQKLWSFLFSDFVEQK 530 ++ + + E E + + +K+ + + + Sbjct: 464 ELMLKYGDYIIEMKDAEDKVYQTTVIEEVICRMEEDNCEIQSETNKKIINEIKQGIQTNE 523 Query: 531 YFLPEEIHQRLCERGFGELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + E ++ L + + Sbjct: 524 LRSERFFITLMNEEITNKVANALVEPYQLSDWKKHNIYLLPKEKSINKLVADTIYRYKRE 583 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + E+++ EAE + + ++ + + I+ Sbjct: 584 YIMKMIEDLKN--------TEAEDKTEIYQKIIKLTMLKNTIDQ 619 >gi|297181478|gb|ADI17665.1| DNA primase (bacterial type) [uncultured gamma proteobacterium HF0130_23I23] Length = 581 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 161/630 (25%), Positives = 283/630 (44%), Gaps = 60/630 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PRDFI L+ I +++ Y+D ++ N Y CPFH+EKT SF + K Sbjct: 4 SIPRDFIDRLVSDSDIVSVLSAYLDLQKKGNN-----YVCRCPFHEEKTGSFTVSPQKSI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C G+ L+F+ G +F+E+V++LA I V +P + +++ +L Sbjct: 59 YHCFGCGKGGNVLTFIQEYEGLNFVEAVEKLAEINNVTVPRESRSNAE---DYSNIYQLN 115 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +V D + +LK+ ++K + YL ERG+ + F +GYA + L++ L + Sbjct: 116 QVLADSYLSALKDKKNKPVVDYLKERGVTGETAKKFLIGYADFDQKELKKKLIDQFSEAT 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L N Y FRNRL+FPI++S G++I FGGRT+ KYLNS ++ Sbjct: 176 LLKSGNFLK---NEKGMYPFFRNRLMFPIKNSTGKIIGFGGRTI-DDSMPKYLNSKDSKF 231 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY F A + F I+ EGYMDV+ L Q G++N V+SLGTA Sbjct: 232 FNKSRELYGFNSAKQDHK-----------LDFFIVTEGYMDVVMLSQHGIENSVASLGTA 280 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + L+ L+KL +IV CFD D+ GL+AA++++ + L + V F+ L GEDPDS Sbjct: 281 FSISHLQKLFKLKRKIVFCFDSDEAGLKAAWRSLQISLSQVFDDKTVRFLFLPEGEDPDS 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 F++ G+ AF + I S+ + +++ R+ ++P++ + K I K + L+ Sbjct: 341 FVKENGQEAFLEKIERSMVIETFVFQFLKRGRNIDSPEDIRLIIFDFKKIIEATKSETLK 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q L +T+ Q+ + L K K Sbjct: 401 ETLLQKFAKELNMNKDLLLTQ------------------DAPQKKISKPLSKKKEKLDFD 442 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 ++ N+ I++ + D + + +E + + Sbjct: 443 NESCLIIYLYENYSQIIKNSTESFEDFLLN--------------AENDRLSDLKETIKSI 488 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + + K+L + + ++ ++ L L L K+ EK+ Sbjct: 489 SKA--SQAHKELSIYAKSMMIDMNLSDEEALNEFNRVTDNLRLEFDKSFLEYLKKLAEKR 546 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++T + E L+++ + +Q ++ Sbjct: 547 --ELTPER-KENLQKLLNLSDNISVQEEEL 573 >gi|33593189|ref|NP_880833.1| DNA primase [Bordetella pertussis Tohama I] gi|33563564|emb|CAE42463.1| DNA primase [Bordetella pertussis Tohama I] gi|332382600|gb|AEE67447.1| DNA primase [Bordetella pertussis CS] Length = 676 Score = 290 bits (742), Expect = 4e-76, Method: Composition-based stats. Identities = 141/488 (28%), Positives = 232/488 (47%), Gaps = 27/488 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF E+V+ LAA G+ +P P+ + + + Sbjct: 57 HCFGCGAHGSAITFLMEHTGASFPEAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + + YL +RG+ F LG++ R+ L Sbjct: 117 HTQVLDAAQAHYLRQLRGS--PQAIAYLKQRGLTGEIAAHFGLGWSGTDRHGLSHVF--D 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++EAGL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYEDPVLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG LY + A ++ +++VEGYMDV+ L G+ N V+ Sbjct: 231 PETPLFSKGHELYGLWEARLAIR----------QEGQVVVVEGYMDVVGLALQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGT+ T ++ L + S +++ FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + E++ L L + + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + LR + + +Q ++ + +A Q + Sbjct: 401 ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADE 460 Query: 477 SKKPSLRE 484 + E Sbjct: 461 APPDWAFE 468 >gi|224373209|ref|YP_002607581.1| DNA primase [Nautilia profundicola AmH] gi|223588382|gb|ACM92118.1| DNA primase [Nautilia profundicola AmH] Length = 540 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 142/611 (23%), Positives = 252/611 (41%), Gaps = 78/611 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I++L I I ++IG YV ++ +N Y A CPFH EKTPSF + +K Y Sbjct: 2 IKPESIENLKSIIDIVDVIGNYVQLKKQGSN-----YTALCPFHSEKTPSFVVSPAKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ + S+ E++++LA + L + ++E Sbjct: 57 HCFGCGASGDAIKFVMDVEKLSYPEAIEKLANLYNFKLEYTKSGSNIRA-------DILE 109 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ L K + YL +RGI+ IE F LGYAPDS + E Sbjct: 110 KVNAFYIQELYKN--KFAYDYLKQRGINDSTIEKFALGYAPDSMKQFQFFKNANLNINEL 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L + Y R R+ FPI S+ G++IA GGRT+ KY+N T +F Sbjct: 168 KALGVL-----SENGEYPRLIERITFPIFSASGKIIAMGGRTI-TNHPAKYINFTNTKIF 221 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K Y A ++ + I+VEGYMDV+ L QAG +++LGTAL Sbjct: 222 NKSKTFYGLNFAREHILRK----------KEAIIVEGYMDVIMLHQAGYNTAIATLGTAL 271 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L L KL +I+L +D D G+ AA KA L+ G +L G DP Sbjct: 272 TPDHLPQLQKLGAKILLSYDSDSAGINAALKASKLLFRSFFEG---GVILFPEGLDPADV 328 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + +P ++ + + + P ++ + LK I + + L+ Sbjct: 329 VKSGN--DLNEYFKNQIPFLEFIIEYTIKKYDIKNPLQKKQALDELKEYIFTLP-EILQE 385 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + LQ + + +S+ + +KK + Sbjct: 386 SFVNKAAQYLQISPKLLLIR-------------------------RSNQPQATGNKKIEI 420 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL- 541 EA+++ TL +P ++ E + L+ + + + S ++ + + L + + + Sbjct: 421 AEASIIKTLYENPHLMDEIVEYLSPDMFKTHRHE--LSLVYQEKFDDPALLDIVLREDVL 478 Query: 542 ---CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E +++K L + L T+ + + ++L+ + ++ Sbjct: 479 CLNMEALKKQIIKLLIPYYQQKVLELKTSNLPTDE----------KMHKLKILNYKILQL 528 Query: 599 EK-QIAQVTAK 608 +K ++ + + Sbjct: 529 KKGELVESDST 539 >gi|242309257|ref|ZP_04808412.1| DNA primase protein [Helicobacter pullorum MIT 98-5489] gi|239524298|gb|EEQ64164.1| DNA primase protein [Helicobacter pullorum MIT 98-5489] Length = 552 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 142/595 (23%), Positives = 256/595 (43%), Gaps = 57/595 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I L + + ++ Y++ + + + ACCPFH E TPSF N SKGFY Sbjct: 2 ITQESIDALKNQLDVVEVVSHYIELKKMGS-----TFKACCPFHQENTPSFVVNSSKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD ++F+ ++ E++++LA V L + K + + +++ Sbjct: 57 HCFGCGASGDSITFVMEYEKINYKEALEKLAQFYNVTLVYDNQKQQNIDSK------IMD 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 D++ N K + Y+ RGI + E F+LGYA + + + +E Sbjct: 111 FMNDYYQ----NGITKEVESYIHSRGISNAMKEKFELGYAGHNYEIMAYLQKNSVDMQEA 166 Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L +D +N Y R RLIFPIRS + ++I FGGRTL KY+NSP+T L Sbjct: 167 LNLGILGVDNENGVKRYYARLTQRLIFPIRSPQNKIIGFGGRTL-GNHPAKYINSPQTKL 225 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY + A + K II+ EGY+DV+ L QAG N V++LGTA Sbjct: 226 FNKSQILYGYPQAKESIYKK----------EEIIITEGYLDVIMLHQAGFTNAVATLGTA 275 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ L LL K +P+I++ +DGD+ G+ AA+KA L+ G VL G DP Sbjct: 276 LTKEHLPLLSKGNPKIIVAYDGDNAGMNAAFKAASLLSLAKKEG---GVVLFDGGLDPAD 332 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ ++L V +PL+D + + + P ++ + + ++ ++ Sbjct: 333 MVKNGEIERLKELFVSPIPLIDFVLEEMIKKYDITNPVQKDKCLQEVLEYLHQF-SAVIQ 391 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + +L+ T+ + + Sbjct: 392 EEYKGFLAQKLKLPSHLIKTQKYNEAK-----------------------IVKNQGDIYD 428 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L E ++ +++ ++L+ L + Q+ + L ++ K + + ++ Sbjct: 429 LAEKIIIKSVLEDSSLLEYVMDFLEPSMFFTQ--QESFLKLIKGDLQDKSLIGILLDSKI 486 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +L +Q+ + + ++A L K + L K+ Sbjct: 487 KPQNKEKLKQQMIM-ILHKFYEEQKNKIIQDKNLSLREKAFLLRKYQKYLENLKK 540 >gi|163856345|ref|YP_001630643.1| DNA primase [Bordetella petrii DSM 12804] gi|163260073|emb|CAP42374.1| DNA primase [Bordetella petrii] Length = 682 Score = 290 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 142/445 (31%), Positives = 228/445 (51%), Gaps = 27/445 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++FL G SF E+V+ LA G+ +P P+ + + + Sbjct: 57 HCFGCGAHGTAITFLMEHTGASFPEAVRTLAGSVGMTVPEENRSPRQQAESARRKAEESR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+ + YL +RG+ F LG++ R+ L + Sbjct: 117 HTQVLDAAQAHYLRQLRASPAA--IQYLKQRGLTGEIAAHFGLGWSGTDRHGLAKVF--D 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++EAGL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYDDPTLVEAGLVIESEDGRR-YDRFRERVMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF KG+ LY + A ++ +I+VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPLFSKGQELYGLWEARQAIR----------QEGQVIVVEGYMDVVGLAQQGIANAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T ++ L + S R+V FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTATTPDHVKKLLRSSDRVVFSFDGDAAGRRAAWRALQACLPVLRDDIAIRFLFLPAE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF + E++ L L + + + RA K + I Sbjct: 341 HDPDSYVRELGAEAFRACLGEAMALSRFLLEELASRHNLAEAEGRASCLHEAKPLLAAIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYIT 441 + LR + + ++Q ++ Sbjct: 401 ECALRLQIEREMARQVQLTPEEMAQ 425 >gi|270307916|ref|YP_003329974.1| DNA primase [Dehalococcoides sp. VS] gi|270153808|gb|ACZ61646.1| DNA primase [Dehalococcoides sp. VS] Length = 590 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 134/624 (21%), Positives = 263/624 (42%), Gaps = 56/624 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 ++++ + I + IGQY + CPFH EK SF ++CF Sbjct: 5 VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C+ GD +F+ G F +++ LA AGV LP + + L + A Sbjct: 60 CNTGGDIFAFVMKKEGLDFKGALELLAEKAGVSLP--SQINPQIRDQRERLYEINLAAAQ 117 Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++H+ L + + + YL RG++ ++ F+LGYA L ++L+++ +++E++++ Sbjct: 118 YYHNLLLNSPQAESARSYLKSRGLNGQSLADFQLGYALPEWQKLYDYLKERSYTDEELLK 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+ I + +DRFRN +I+PI + +GQ+ FG R + KY NSP+T LF K Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LY A ++ + I+VEGYMD + Q G N V+ +GTALT+ Sbjct: 236 SLLYGLHLASASIR----------EKNQAIIVEGYMDAIMSHQGGFTNTVACMGTALTDR 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+ L+ + + +VL D D G A +AID + + + G+DPD IR Sbjct: 286 QIALIKRQTKNLVLGLDADSAGEEATLRAID---YENQIESEIRVAVPEGGKDPDEIIR- 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + +++++ + PL+D ++K + ++ +A L L I+ ++D + +Y Sbjct: 342 HAPQTWQEILDNARPLLDYIFKHSQKGLDLSSAAGKAGLTDRLLPIISKMEDGVRQSHYL 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + + R ++ + +++ ++ + + + + K E Sbjct: 402 GKLAEIVS----------TSQNRILERMKKLKNETRITKAIEKETTSTAVSAAKNPALEE 451 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L + +L + + ++L + + + + L + Sbjct: 452 YALSLLFTSAEL-TRFAGKLHPEYLEIPQYRELLTVY------NQSAEKDTLRAGL-DEN 503 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 E L + D + L L R R L ++ + ++++ Sbjct: 504 LREYYDNLMNKN------------AANDNIEDKFCDLCLRLRERYLRNLAVKLNQALSEI 551 Query: 606 TAKGEAEKTAILISILHEVHIQIH 629 E + L +V+ ++ Sbjct: 552 NQ-PETAEYQALNDQCVKVNEELR 574 >gi|237803224|ref|YP_002888418.1| DNA primase [Chlamydia trachomatis B/Jali20/OT] gi|231274458|emb|CAX11253.1| DNA primase [Chlamydia trachomatis B/Jali20/OT] Length = 595 Score = 289 bits (740), Expect = 7e-76, Method: Composition-based stats. Identities = 142/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA + L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHIDLVVRTKETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|27904561|ref|NP_777687.1| DNA primase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340263|sp|Q89B09|PRIM_BUCBP RecName: Full=DNA primase gi|27903958|gb|AAO26792.1| DNA primase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 578 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 284/636 (44%), Gaps = 71/636 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P++FI +L+ I ++I + + N CPFH EKTPSF N K FY Sbjct: 5 IPKEFINELIFKTNIIDIINTRLPLKKVGKNYNTH-----CPFHQEKTPSFTVNFEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120 +CF C+ G+ + FL +F+ES++ LA I G+ +P + EK + T+L L Sbjct: 60 FCFGCNTHGNIIDFLMNYEQLTFVESIKELAKIHGLTIPCKNINKEKLFNYEKITNLYLL 119 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + D +H ++ + + Y+ RGID I+ F LG++P + Y L + +++ +++ Sbjct: 120 TKNIADLYHRNIFKT--EYAYQYILNRGIDKSMIKYFNLGFSPKNWYDLEKKNKKQCYNQ 177 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 +++ E G+L T YDRF+NR+IFPIR+ G ++ FGGRTL KY+NSPET Sbjct: 178 KELQEIGILKTTILGYT-YDRFKNRIIFPIRNKNGNIVGFGGRTL-NNHIPKYINSPETQ 235 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +FHKG LY + L K I++VEGY+DV++L Q + +S+LGT Sbjct: 236 IFHKGFQLYGLYEMLKTNPKP----------KQILIVEGYVDVIALVQFKINYTISTLGT 285 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ++ Q++LL++ S I+ C+DGD G +AA++ +++ L H+ G V F+ L EDPD Sbjct: 286 IISNEQIKLLFRTSNTIIFCYDGDVSGQKAAWRTLNISLSHIHDGKNVKFIFLPNNEDPD 345 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S IR G F+ I +S+ L + + N+ E++ + I I + Sbjct: 346 SIIRKEGHDNFKIRIKKSIDFSKFLLQTLFKKTDLNSISEKSHTSTIAISLIRKIPGKIT 405 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y Q + ++ L + ++ K + +K Sbjct: 406 QTYLFQTLSKKIGILDYHVLINNNINNINTKIYTKKPIKKTTI----------------- 448 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-----WSFLFSDFVEQKYFLPE 535 ++ LI +P + L + + K+ + L + Sbjct: 449 ----RIVIALLIQNPWLA------LTLPSLKHLQNYKIIGLSCFLDLVEKCISMPNSNTG 498 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRLLSRQ 594 +I ++ + K L + + + +D + ++ +L+S++ Sbjct: 499 QILEKYRN---KNIFKHLANLAKWDHMIHNEKIKDFFLDSLTKICDIILEDRQNKLISQE 555 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ + EK L ++ ++ + Sbjct: 556 ---------RLNGLNKQEKY-----ELWSINKELAK 577 >gi|188996274|ref|YP_001930525.1| DNA primase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931341|gb|ACD65971.1| DNA primase [Sulfurihydrogenibium sp. YO3AOP1] Length = 539 Score = 289 bits (740), Expect = 8e-76, Method: Composition-based stats. Identities = 137/570 (24%), Positives = 260/570 (45%), Gaps = 48/570 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I+++ + ++I Y+ + + Y A CPFH+E+TPSF + +K Sbjct: 1 MAISPETIEEVQRVANVYDIISDYLSLKKTGSV-----YVALCPFHNERTPSFVVSPTKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C + G+ + F+ SF +++ ++A G+ + + KEK L L Sbjct: 56 IFKCFGCGISGNAIKFVMEYEKISFSDAIIKIAQKYGITVKYIGND---KEKHLKGLYSL 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + TDF+ + LK + + YL +RGI I F++GY+P++ + +++ S Sbjct: 113 TKQITDFYKNQLKES--QIAREYLRKRGIQPQTIIDFEIGYSPENPERFNKFIQENNISI 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + + GL+ ++ YD+F R+IFPI+ +G ++ FGGR + + KYLNSPET Sbjct: 171 EDLNKIGLISVHND--KIYDKFSGRIIFPIKDHKGNIVGFGGRAIDENRHPKYLNSPETQ 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K K LY F ++ S +++VEGYMD++SL Q G++NVV++LGT Sbjct: 229 VYKKSKVLYGLFENSQIIK----------EKSQVVIVEGYMDLISLYQIGIKNVVATLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ + LL K +++ FD D+ G +AA +A +++L G V + + +DPD Sbjct: 279 ALTKEHVNLLKKYVKEVIVMFDSDEAGKKAAIRAAEILLSE---GITVRYAYYTEAKDPD 335 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL---EIHLKNCINHIKD 417 + G A +++I + ++ L ++ E + + + ++ + ++KD Sbjct: 336 ELSK-KGLNAVKEIINNAEDIIFFLTRKLKEINNIEDKQQLMKYTAIYNYILMMLANVKD 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 LR Y + L + K +E +Y +K R + KL+ Sbjct: 395 HGLRTSYVFHLSQILNKTPSKIESEIDDIKKYPEKEYRF-----------EMEEEANKLN 443 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K S +E L+ + +P +L++ + I + ++ + I Sbjct: 444 LKLSYKEKVLIKYIYQNPEVLKD--EIFDKISFPEK-----IQYIIDLIKNNAEYEL-LI 495 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + + + + + Sbjct: 496 SDIIQDTKIQPSYESFQNILNEFVKKHEKE 525 >gi|297621010|ref|YP_003709147.1| DNA primase dnaG [Waddlia chondrophila WSU 86-1044] gi|297376311|gb|ADI38141.1| DNA primase dnaG [Waddlia chondrophila WSU 86-1044] Length = 595 Score = 289 bits (739), Expect = 9e-76, Method: Composition-based stats. Identities = 148/632 (23%), Positives = 257/632 (40%), Gaps = 57/632 (9%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + ++ ++ L + + +++ +++ R + Y CPFHDEKTPSF + Sbjct: 1 MRLFTQESLERLRSRVDLIDVLSSHMELKRSGS-----AYKGLCPFHDEKTPSFIVQKGE 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 Y+CF C GD + FL L F ESV+ LA V L V+ K + + + Sbjct: 56 RHYHCFGCGEHGDAIKFLMTYLNLGFQESVESLAERFHVHLDCVEAKDQYTGPSKAAMKE 115 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +E+A+ FFH L +YL RG+ I+ F+LG AP L + L +K Sbjct: 116 AMEIASCFFHFILLHTPEGHEALHYLYSRGVCLEFIKQFRLGLAPKVSGMLHKVLHEKKI 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 ++ + GLL D+ + + F +R+ FPI G VI F R + KY+N+P Sbjct: 176 GDDVMRGCGLLTRSDSG-KTREFFSDRITFPIYHPSGSVIGFSARKYREETFGGKYVNTP 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF K + L+ + K R +I+VEG +D L L G VV++ Sbjct: 235 ETPLFKKSRVLFGLNHCRRRIVKERR----------VIIVEGQIDALRLIYEGFNFVVAA 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLC-FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 GTA L + ++ FD DD G AA K DL + G V V L G Sbjct: 285 QGTAFGIEHAAELAGMGVNLIYLAFDSDDAGREAAAKVGDL---FQMRGIEVRIVSLPGG 341 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD+F+ G AF+KL+ + ++ L + + +TP + L H+ + + Sbjct: 342 TDPDTFLMEKGPEAFQKLMEKGQGYLEFLVGHLSRGIAIDTPAGKNHLVKHVSEQLRKWE 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D + + + + LQ + + P+ + +S+ V + Sbjct: 402 DPVMVHESLRKLARLLQVPEEYL---------------GVGQEYLPNTLIRKSASVGFEE 446 Query: 477 SKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E L LI ++ L + ++L+ + LP Sbjct: 447 VDPEKILELDFLRWLIVVGSQEFVEIAQFNLHPGDLRHEGCRRLYQTYLTSLHNH---LP 503 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 ++ + EL+ +L + + N ++ + Q++ + ++ Sbjct: 504 SDLLSLIQTEEDQELVAELMSR-----------KVNREKGKEQFAQSIQRILDRNWMEKR 552 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 EEI ++I + + E+ L+ E+ Sbjct: 553 -EEIRRRI--HSGQLSDEEALSLLKTFDELKR 581 >gi|313681209|ref|YP_004058947.1| DNA primase [Sulfuricurvum kujiense DSM 16994] gi|313154069|gb|ADR32747.1| DNA primase [Sulfuricurvum kujiense DSM 16994] Length = 547 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 143/604 (23%), Positives = 246/604 (40%), Gaps = 63/604 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L + I +++G Y++ R + + A CPFHDEK+PSF N S+ Y Sbjct: 2 ITQDSIEALKARLDIVDIVGSYIELKRAGS-----SFKAPCPFHDEKSPSFVVNPSRQSY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ ++ E++++LAA L D +KK L+E Sbjct: 57 HCFGCGVHGDSIKFVMEFEKLNYPEAIEKLAASTNFTLHYTDNAQQKKRST------LLE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 D++ L+ R + YL ERGI + +IE F +GYAP S +LR ++K + E Sbjct: 111 SLNDWYQKLLEQNRTAQE--YLHERGIYASSIERFGIGYAPTSPETLRFLEQRKLPTAEA 168 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I + I + + RF R+ FPI S+ G ++ FGGRT+ G KY+NS ++ +F Sbjct: 169 IEQGA--IGRGDDGRLFARFIERITFPIHSTSGAIVGFGGRTI-TGHQAKYVNSSQSAIF 225 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + A + + II+ EGY+DV+ L QAG + V++LGTAL Sbjct: 226 NKSRLLYAYHLAREAIYR----------RREIIVTEGYLDVVMLHQAGFTHAVATLGTAL 275 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P++ + +DGD G AA+KA L G +L G DP Sbjct: 276 TAEHLPLLRKGEPKVYVAYDGDKAGRAAAFKAAKL---LSTSGFDGGVILFEGGLDPADM 332 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I+ L+ +P ++ + P + + + L+ Sbjct: 333 IKSGQIEQLNALLHRPIPFIEFVITEMISAYDLQDPKAKETALHENIAFLKTL-SPLLQE 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I +L ++++ + + Sbjct: 392 EYRPFIASKLGISPSLIQIGQ-----------------------KKNTVPQPINFSHHDI 428 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E + + TL+ P I + + + + + R+ Sbjct: 429 WELSFIKTLLERPHIADTLLDFIDASLLQ--YHVQEFESALQGRNDDPRLSALMMDDRIR 486 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E L+ A L + + ++++ Q + + L RQ + +++ Sbjct: 487 TFEGDEGLR--------AELITFLSAHYNRELKKVTTQNTVSFDQKSYLIRQYRDKIERL 538 Query: 603 AQVT 606 + Sbjct: 539 KRGE 542 >gi|298529695|ref|ZP_07017098.1| DNA primase [Desulfonatronospira thiodismutans ASO3-1] gi|298511131|gb|EFI35034.1| DNA primase [Desulfonatronospira thiodismutans ASO3-1] Length = 565 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 152/625 (24%), Positives = 261/625 (41%), Gaps = 64/625 (10%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ + ++ + + +++G+YV G CPFH E SF + Sbjct: 1 MSFIDPREVAEIKSRLSLEDIVGRYVQLKTVG-----GRLMGPCPFHQETRASFSVTPDQ 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL-I 118 GFYYCF C GD + F + G F E+V +LAA AGV L + + Sbjct: 56 GFYYCFGCQASGDIIEFFKNINGLDFNEAVTQLAAEAGVKLARQGGSPGPASMGRASVCR 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + FF L+ + ++ YL++R I + F LG++PD +L+ L +GF Sbjct: 116 EVNSWSNSFFGQHLQGSNGQKARLYLEKRQISQETAKAFGLGWSPDGWNNLKSFLESRGF 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + E +EAG+L YDRFR RLIFPI + G V+AFGGR + + KYLNS E Sbjct: 176 TPEDGVEAGVLSRN-ERGRIYDRFRARLIFPIIALSGAVVAFGGRVM-GDDEPKYLNSSE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + ++ KG++LY + A ++ +S R ++L EGY+DV++L Q G +N L Sbjct: 234 SPIYTKGEHLYGLYQARTHITRSSR----------VLLTEGYLDVMALHQYGFENSCGIL 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ Q++ + L+ +VL FDGD PG AA K+ ++ L G ++L GED Sbjct: 284 GTALTKAQVKRMAGLAREVVLIFDGDAPGQSAALKSAEM---ILQAGLTCRVLILPEGED 340 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 S + G+ E L+ ++ +D K + N+S E ++N I H KD Sbjct: 341 AHSLLVARGRQGLEDLLQKTTDGLDFCLKMLSTNKSPG------ETMKWVENFITHFKDL 394 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R YY + L ++ + + + + R Q+G Sbjct: 395 SWRSYYIPRVAHVLGLTEKELREKFTPAAQKTPGDTRVWSQQGKG--------------- 439 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 R+ LL + P + + + ++ W L + Sbjct: 440 -AEQRDRELLTFAVCFPEDRTRLQNKNLGLVLTSQWARQFWDKLRVMHQDD--------- 489 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L L+ + S A + + + + + + Sbjct: 490 -----------LSALNEDESAFFVQSKMQRAQLEKEKTRILAQIEEFIDRCMTRMSTRNL 538 Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623 + +++ + ++ ++ +L + Sbjct: 539 KTALSRAQQSQDQDEVRRILQLLQK 563 >gi|15605527|ref|NP_220313.1| DNA primase [Chlamydia trachomatis D/UW-3/CX] gi|237805145|ref|YP_002889299.1| DNA primase [Chlamydia trachomatis B/TZ1A828/OT] gi|255311629|ref|ZP_05354199.1| DNA primase [Chlamydia trachomatis 6276] gi|255317930|ref|ZP_05359176.1| DNA primase [Chlamydia trachomatis 6276s] gi|9910816|sp|O84799|PRIM_CHLTR RecName: Full=DNA primase gi|3329259|gb|AAC68389.1| DNA Primase [Chlamydia trachomatis D/UW-3/CX] gi|231273445|emb|CAX10360.1| DNA primase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436343|gb|ADH18517.1| DNA primase [Chlamydia trachomatis G/9768] gi|296437274|gb|ADH19444.1| DNA primase [Chlamydia trachomatis G/11222] gi|296438202|gb|ADH20363.1| DNA primase [Chlamydia trachomatis G/11074] gi|297140703|gb|ADH97461.1| DNA primase [Chlamydia trachomatis G/9301] gi|297748921|gb|ADI51467.1| DNA primase [Chlamydia trachomatis D-EC] gi|297749801|gb|ADI52479.1| DNA primase [Chlamydia trachomatis D-LC] Length = 595 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA V L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|325107208|ref|YP_004268276.1| DNA primase [Planctomyces brasiliensis DSM 5305] gi|324967476|gb|ADY58254.1| DNA primase [Planctomyces brasiliensis DSM 5305] Length = 652 Score = 289 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 147/645 (22%), Positives = 259/645 (40%), Gaps = 48/645 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 +F + + I L+G+ R +Y A CPFHD+ +PS N + Y C+ Sbjct: 8 EFKEQVRAQTNIVALVGETRAVTPR---NGGREYVALCPFHDDHSPSLTINPERQTYRCW 64 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD S+L L G F +++++LA A + LP V P K+ + + + +E A Sbjct: 65 VCDEGGDCFSYLMKLEGLDFRQAMEQLAQRANLELPQVGPPNGKRGAGRNEQLAALEWAC 124 Query: 126 DFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + FHH L + ++ YL +RG F++G+ P L R + F + + Sbjct: 125 EQFHHCLLNHPEAEKAREYLFDRGFCEEIWADFRMGFHPGPWEWLMTKARGR-FKLDVLE 183 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV---KYLNSPETIL 241 A L+ + + + FRNR+ FPI + RGQVIAFGGR L + KY NS E+ L Sbjct: 184 AARLISPRSSGSGYIEHFRNRITFPIVNERGQVIAFGGRVLPGSDDEKFGKYQNSRESPL 243 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K + LY A +++ R +I+VEGY D ++L Q G+ N V++LGTA Sbjct: 244 FSKSRQLYGIDHAKEAMREQGR----------VIVVEGYTDCIALHQQGIANSVATLGTA 293 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE + L+ + ++L FDGDD G AA +A+ ++L H + + G DP Sbjct: 294 LTEQHVDLIRRFCQEVLLVFDGDDAGQNAAQRALPVLLGH---DIELKLFAIPEGMDPPE 350 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQK 419 F+ YG F++L+ + + +R + ++ R + + ++ Sbjct: 351 FLEKYGLQKFQELLQNACDAWEFKLQRLEQEFDRDSSFGRDRIVEEMLGLLSIAPAISGT 410 Query: 420 LRYYY-SQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R Y + +R L+ ++ + + R + P+ + Sbjct: 411 TRENYLLNHLANRIGLRGTQEQILHDRLRKLRRNGAPVAKQSPGTPATPPEGVVSAPPEE 470 Query: 477 S-----------------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + + + E LL +I P L Q L+ L Sbjct: 471 NRDLNFGEEVRRLLRDQLDRLTALERDLLEIIITMPESLTLIRQRGLLETIQTRSLRLLM 530 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV----DVR 575 + Q++ E + + + +L+ L + + E + Sbjct: 531 TECDRLSQRQEFVSYEALLTAIDDLELKKLILGLADRSDQRRIAEKLQETTALPEGTQCP 590 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGEAEKTAILIS 619 +Q + + SR ++ +A ++ L+ Sbjct: 591 IYLRQVIERLEWEHKESRHRKSARLVVAPAQEPTSAEDRMQQLLQ 635 >gi|253581344|ref|ZP_04858570.1| DNA primase [Fusobacterium varium ATCC 27725] gi|251836708|gb|EES65242.1| DNA primase [Fusobacterium varium ATCC 27725] Length = 591 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 150/633 (23%), Positives = 261/633 (41%), Gaps = 54/633 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I L+ + I ++G++V+ + + Y CPFH + +PSF + SK Sbjct: 1 MRYRSEDIDMLIESLKIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ + F S SFIE+V+ L+ G+P+ K E+ ++ Sbjct: 56 ICKCFVCGAGGNPVKFYSEYKKISFIEAVEELSKKYGIPI-KGISSNRKNEESYDKYYKI 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E A FF + + + YL R ++ I+ +LG+AP+ L ++L KG+ Sbjct: 115 MEDAHSFFKEYIFSNNGREAMEYLVARKLNPKIIKDNELGFAPNKWNELNDYLISKGYEL 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 + II GL+ + + YD FRNR++FPI S G+VIAFGGRTL + KY+NSP+T Sbjct: 175 KDIIALGLVKE--SENGQYDIFRNRIVFPIYSPTGKVIAFGGRTLENNKEVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKNLY + ++ +L+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNLYGL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +LL + + I+L FD D G A +A ++ G + ++L +DP Sbjct: 282 TALTEEQGKLLKRYTSNIILSFDSDAAGQAATERAGMILKAL---GFNIRVLILEGAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ YGK +F K + S+ + D L+K ++ F+ + K + Sbjct: 339 DEYLKLYGKESFLKCVKNSVEIFDFLFKYYSKEYDFSNMMSKQNFINRFKEFFQSVDTDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + +L R + + + + Sbjct: 399 EKSLYLDKLSKQLNIEKDILKETLIDKNRKKSR-----------KPEEVLENISISREET 447 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 S E L ++ + + +K++ + E +I + Sbjct: 448 ASKLEELTLGLILARNEYFKYFKDKNIKGSLT----KKVFQYFKEREEE------TDIIR 497 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE-- 597 L + EL K + + + + + ++ + R L +QK Sbjct: 498 ELKDSV--ELTKAETEEWEIVICMAINDFSTEERINKLLEEIFISWFRIELKEKQKNREN 555 Query: 598 ------IEKQIAQVTAKGEAEKTAILISILHEV 624 ++ ++ A K + E+ Sbjct: 556 ISKTIGLKSIELKLNAADGFSKILDIYKEYEEI 588 >gi|325284165|ref|YP_004256706.1| DNA primase [Deinococcus proteolyticus MRP] gi|324315974|gb|ADY27089.1| DNA primase [Deinococcus proteolyticus MRP] Length = 581 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 150/624 (24%), Positives = 257/624 (41%), Gaps = 54/624 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + I+++IG+YV G CPFH EK+PSF + +G+YYCF C G Sbjct: 2 RDRLNIADVIGEYVSLTPAGK----GRLKGLCPFHKEKSPSFQVDTEQGYYYCFGCKAGG 57 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D F+ SF +++++LA AGV L + ++ L + + A +F Sbjct: 58 DVFKFVQETENLSFGDALRKLAERAGVQLEQKYGERVSRD-----LYDVNDFALQYFRSH 112 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 L+ Y RG+ +E F+LG+APDS L + R G SE ++++AGLL Sbjct: 113 LR----GDALAYFQGRGLTPQVMEDFELGFAPDSWDGLLQQARAHGLSERQLLDAGLLTQ 168 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 YDRFR R++FPIR G+++ FGGR L KYLN+PET F KG+ LY Sbjct: 169 N-EQGRVYDRFRGRVMFPIRDHLGRLVGFGGRVL-DDSKPKYLNTPETDAFKKGELLYGL 226 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL- 310 A + L+ +I+ EGYMDV++L Q G V+SLGTALT LL Sbjct: 227 HRARSVLK----------DGQPLIVAEGYMDVIALQQHGFAGAVASLGTALTAEHAALLE 276 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + +VL FD D+ GL+A +D + +V + G+DP +R + Sbjct: 277 RLGARELVLMFDRDEAGLKATLSGLDQTVGAR---FQVRATSVPSGKDPADALREGDVQS 333 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 ++ + L ++ + ++ D + ++ + L + ++ D D Sbjct: 334 IQRALQGGLNEIEYRVHAARDRYGLDSRDGKRKILMELLPRMQNL-DP------LDEGAD 386 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +++ + + W + R + S + RE ALL Sbjct: 387 QMRAKVCELLDIRPQALLDWIGSKAKRRTLTDTHLAGMS-----QGGGHEEDRELALLRQ 441 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 L+ P +L + L + N ++K+ Q ++I + L Sbjct: 442 LLVDPRLLAKLDGTLG---WRNELVRKV------MLAAQGAQSTDDIMSVFRGQPEEGQL 492 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGY----QQALALYKRFRLLSRQKEEIEKQIAQVT 606 ++ + R +G S +Q Y + + L + + ++ Q+ Sbjct: 493 IRMMFETRQSGNISRAGHEEYEAKQQTYAAAAVDDIQVGLSIESLRGEVKLLKSQLLDAP 552 Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630 +A+ + + + + Sbjct: 553 PTQQADILRQITELQRAIEAEKRA 576 >gi|255507409|ref|ZP_05383048.1| DNA primase [Chlamydia trachomatis D(s)2923] gi|289525838|emb|CBJ15319.1| DNA primase [Chlamydia trachomatis Sweden2] gi|296435418|gb|ADH17596.1| DNA primase [Chlamydia trachomatis E/150] gi|296439135|gb|ADH21288.1| DNA primase [Chlamydia trachomatis E/11023] Length = 595 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSILGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA V L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSATEDKGKKVSAKEPSSESEQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSTDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|315637634|ref|ZP_07892840.1| DNA primase [Arcobacter butzleri JV22] gi|315478088|gb|EFU68815.1| DNA primase [Arcobacter butzleri JV22] Length = 544 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 134/595 (22%), Positives = 251/595 (42%), Gaps = 60/595 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L H+ + ++I Q+++ + N + ACCPFH E TPSF + +K Y Sbjct: 2 IKKESIENLKNHLDVVDVISQFIEIKKAGAN-----FKACCPFHGENTPSFVISPAKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ S+ E++++LA++ L +K++ I+++E Sbjct: 57 HCFGCGVGGDSIKFVMEYEKLSYPETIEKLASMYNFTLDYDSSTEKKQD------IKILE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ N +++ Y+ +RGI +++ F++GYAP S ++ K Sbjct: 111 DVNKFYQKLYINN--EQVKNYIKDRGISDFSVQKFEVGYAPASIDTINFL---KSNHFNL 165 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L + + Y RF R+ FPI S G+++ FGGRT+ G + KY+NSP+T LF Sbjct: 166 SEAIDLGVIDTGANGLYSRFIERITFPIYSINGKLVGFGGRTI-SGHNAKYVNSPQTKLF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY + A + K + II+ EGY+DV+ L QAG V++LGTAL Sbjct: 225 NKSKLLYGYNLAKEKIYK----------TKQIIICEGYLDVIMLHQAGFDIAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL + P+++L +DGD GL AA+KA ++ G V+ S +DP Sbjct: 275 TAEHLPLLRRGEPKVILAYDGDKAGLAAAFKASVMLSQSQFEG---GVVIFSDNQDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ K+ + + N P ++ + + + + + Sbjct: 332 VKAGKIEELNKIFLNPQSFIPYAIDYIISKYEINDPIQKQKALTEANDYLKSL-SLLNQD 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + I +L ++ + K + Sbjct: 391 EYKRYIAQKLN-----IRENLVKISSDKQRTNQV-------------------SLSKIDI 426 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ +++ P L + + + + L +D ++++L Sbjct: 427 AELCIIKSILEKPQRLDSVLDIVDVSMF--EYHKTEFELLLNDIK-DSSLNAIVLNEKLE 483 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L ++L V ++ A D ++Q + ++ + Q ++ Sbjct: 484 NYDDERLNQEL--LVLLHKFYTNKLMAISYDKELEFKQKANMIRKIKDNIYQLKQ 536 >gi|262341114|ref|YP_003283969.1| DNA primase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272451|gb|ACY40359.1| DNA primase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 613 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 153/647 (23%), Positives = 283/647 (43%), Gaps = 56/647 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ IK +L I ++IG +V+ + N Y PF +EKTPSF + +K + Sbjct: 2 ICKETIKKILSVSCIEDVIGDFVELKKSGLN-----YRGLSPFSNEKTPSFIVSPTKKIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 FS G+ ++FL +++ES++ LA + + + + + L + + Sbjct: 57 KDFSSGKGGNIITFLMEHEHFTYVESLRYLAKRYHIKIQYTEEFSKIDHEEYEKLYFIQD 116 Query: 123 VATDFFHHSLKNARDKR---LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L ++ + +Y + +RG + I F+LGYAP S + +KGF Sbjct: 117 YAKRFFINQLFCTKEGQKNGFNYLIQKRGFNMKIIHKFELGYAPLSWSFFTKKALEKGFK 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSP 237 + + ++G I S +D FR R++FPI + G+VI FGGR + S KY+NS Sbjct: 177 IQDLKKSGFTIYRKYSNNFFDCFRKRVMFPIHNLSGRVIGFGGRNIDSSSSYSTKYINSS 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ +F K K LY F A + K LVEGY DVLSL Q+G++NVVSS Sbjct: 237 ESDIFQKSKILYGLFQAKKNILK----------EDLCYLVEGYTDVLSLHQSGIKNVVSS 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 G +LT Q+ L+ K + IVL +DGD G++A+ + I++ L G + + +S GE Sbjct: 287 SGISLTVDQILLIKKFTKNIVLFYDGDRSGIKASLRGINM---ILEQGINLRILFISNGE 343 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDS + Y + + + ++ ++ + P +++ +++ N I+ I + Sbjct: 344 DPDSLSKKYSISQLKDFLAKNSYNFISFKQKIYGKFHQDDPIKKSFFVLNILNSISKISN 403 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y Q LQ + I E + + R + + Sbjct: 404 VLQKELYLQEASKMLQIRQKILINELERINKKNGQKLRTVQAIQAGGN--------NQNT 455 Query: 478 KKPSLREAALLLTLINHPAILQE-------QYQELA------DIRYDNNELQKLWSFLFS 524 E L+ ++NH + + +E+ ++R+ N+ Q+++ + Sbjct: 456 NTLLFIEKELIQLILNHGNKIIKKEKCNTTVLEEILYAFKYWNLRFSLNKNQEIFDKICL 515 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + ++ +L F + + ++ D Y + L Sbjct: 516 QNKKIGHY-------KLNNTEFSDK-ENPKFYSLSKWDKKGIKVSSFDDHIDQYITDILL 567 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQ 630 R +S+ + K+I +T + +K L ++ +E+H ++H+ Sbjct: 568 RYRVLYISKLIK---KEIIHITKDDDRLKKIMDLTNVKNEIHKKLHR 611 >gi|237755495|ref|ZP_04584117.1| DNA primase [Sulfurihydrogenibium yellowstonense SS-5] gi|237692359|gb|EEP61345.1| DNA primase [Sulfurihydrogenibium yellowstonense SS-5] Length = 536 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 132/565 (23%), Positives = 243/565 (43%), Gaps = 48/565 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ + ++I Y+ + + Y A CPFH+E+TPSF + +K Sbjct: 1 MAISPETIDEVQRVANVYDIISDYLSLKKTGSV-----YVALCPFHNERTPSFVVSPAKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C + G+ + F+ SF E+V ++A G+ + + K+K L L Sbjct: 56 IFKCFGCGISGNAIKFVMEYEKISFSEAVIKIAQKYGITVKYIGND---KDKHLKGLYSL 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 TDF+ + LK + + YL +RGI I F++GY+P++ + +++ S Sbjct: 113 TRQITDFYKNQLKES--QIAREYLKKRGILPQTIIDFEIGYSPENPERFNKFIQENNISI 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + + GL+ ++ YD+F R+IF I+ +G ++ FGGR L + KYLNSPET Sbjct: 171 EDLNKIGLISVHND--KIYDKFSGRIIFTIKDHKGNIVGFGGRALDENRHPKYLNSPETQ 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ K K LY F ++ S +I+VEGYMD++SL Q G++NVV++LGT Sbjct: 229 VYKKSKVLYGLFENSQIIK----------EKSQVIIVEGYMDLISLYQIGIKNVVATLGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALT+ LL K ++ FD D+ G +A +A +++L G V + + +DPD Sbjct: 279 ALTKEHANLLKKYVKEAIVMFDSDEAGKKAVIRAAEILLSE---GITVRYAYYTEAKDPD 335 Query: 361 SFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 + + + + K + + ++ + ++ D Sbjct: 336 ELSKKGLNVVKEIINNAEDIIFFLTQKLKEINNLEDKHQLMRYKTIYNYILMILANVNDH 395 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L+ Y + L + K +E +Y P + + KL+ Sbjct: 396 GLKASYVNYLSQMLDKTPSKIESEIDDIKKY------------PEKEYREMEEEADKLNL 443 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL--PEE 536 K S +E + + +P +L++ + I + ++ + + Sbjct: 444 KLSYKEKVFIKYIYQNPEVLKD--EIFDKISFPEK-----IQYIIDLIKNNAEYELLISD 496 Query: 537 IHQRLCERGFGELLKQLDRQVRDAG 561 I Q + E + + + Sbjct: 497 IIQNTKIQPSYESFQDILNEFVKKH 521 >gi|157737845|ref|YP_001490529.1| DNA primase [Arcobacter butzleri RM4018] gi|157699699|gb|ABV67859.1| DNA primase [Arcobacter butzleri RM4018] Length = 544 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 139/604 (23%), Positives = 256/604 (42%), Gaps = 71/604 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L H+ + ++I Q+++ + N + ACCPFH E TPSF + +K Y Sbjct: 2 IKKESIENLKNHLDVVDVISQFIEIKKAGAN-----FKACCPFHGENTPSFVISPAKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ S+ E++++LA++ L +K++ I+++E Sbjct: 57 HCFGCGVGGDSIKFVMEYEKLSYPETIEKLASMYNFTLDYDSSTEKKQD------IKILE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ N +++ Y+ +RGI +++ F++GYAP S ++ K Sbjct: 111 DVNKFYQKLYINN--EQVKNYIKDRGISDFSVQKFEVGYAPASIDTINFL---KSNHFNL 165 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L + + Y RF R+ FPI S G+++ FGGRT+ G + KY+NSP+T LF Sbjct: 166 SEAIDLGVIDTGANGLYSRFIERITFPIYSINGKLVGFGGRTI-SGHNAKYVNSPQTKLF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K LY + A + K + II+ EGY+DV+ L QAG V++LGTAL Sbjct: 225 NKSKLLYGYNLAKEKIYK----------TKQIIICEGYLDVIMLHQAGFDIAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL + P+++L +DGD GL AA+KA ++ G V+ S +DP Sbjct: 275 TAEHLPLLRRGEPKVILAYDGDKAGLAAAFKASVMLSQSQFEG---GVVIFSDNQDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ K+ + + N P ++ + + + + + Sbjct: 332 VKAGKIEELNKIFLNPQSFIPYAIDYIILKYEINDPIQKQKALTEANDYLKSL-SLLNQD 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + I +L ++ + K + Sbjct: 391 EYKRYIAQKLN-----IRENLVKISSDKQRTNQV-------------------SLSKIDI 426 Query: 483 REAALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ++ +++ P L +++ Y E + L + + + E++ Sbjct: 427 AELCIIKSILEKPERLDSVLDIVDISMFEYHKTEFELLLNDIKDSSLNAIVLN-EKLENY 485 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ER ELL L + + + Y + L ++ ++ R+ ++ Sbjct: 486 DDERLNQELLVLLHKFYTNKLMAI------------SYDKELDFKQKANMI-RKIKDNIY 532 Query: 601 QIAQ 604 Q+ Q Sbjct: 533 QLKQ 536 >gi|255349192|ref|ZP_05381199.1| DNA primase [Chlamydia trachomatis 70] gi|255503729|ref|ZP_05382119.1| DNA primase [Chlamydia trachomatis 70s] Length = 595 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSILGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA V L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPYGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSATEDKGKKVSAKEPSSESEQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSTDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|319760204|ref|YP_004124142.1| DNA primase [Candidatus Blochmannia vafer str. BVAF] gi|318038918|gb|ADV33468.1| DNA primase [Candidatus Blochmannia vafer str. BVAF] Length = 592 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 151/599 (25%), Positives = 287/599 (47%), Gaps = 41/599 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P+ I+ L+ I +LI Q + ++ +N + ACCPFH EK PSF N K F Sbjct: 4 RIPKTLIETLISRTNIVDLINQRIPLKKKGSN-----FIACCPFHSEKYPSFTVNFKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-KIQTDLIRL 120 YYCFSC G+ ++FL +FIE +++L+ I G+ + + + +L + Sbjct: 59 YYCFSCGAHGNIINFLMNYDQYTFIECIKKLSTIHGISIKNFFYHNTTSQISHENNLYKF 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + ++++ ++L N + H YL RG+ +++I F +G+AP ++ ++L ++ Sbjct: 119 MSDVSNYYQNNLINKKYAYAHKYLQNRGLTTNSIANFNIGFAPMGWNNIAQNLNLNTYNS 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 + I ++G+ ++ YDRFR R+IFP+++ G++I FGGRT+ + KYLNSP+T Sbjct: 179 KLITQSGIYVENGKKNK-YDRFRERIIFPMKNQEGKIIGFGGRTIQHNPKQPKYLNSPDT 237 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ + + +I+LVEGYMDV+ L Q G+ VVS+LG Sbjct: 238 TIFKKNQYLYGFYETCK----------KHKNIPYILLVEGYMDVIILTQFGINYVVSTLG 287 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+++ Y +RL++ ++ +I+ C+DGD+ G +AA++ ++ VL +L ++F+ L EDP Sbjct: 288 TSMSVYHIRLIYSVTNQIICCYDGDNAGKKAAWRTLNTVLPYLTDNKEISFMFLPNQEDP 347 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D+ IR GK +F K I ++ L + L++ ++ + +T + R +L + IN I Q Sbjct: 348 DTLIRKIGKDSFLKQISKAQSLSNFLFETLSKKINLHTLEGRVKLSSLILPMINQIPGQI 407 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ Q + + L + + ++ ++ + Sbjct: 408 LQLCLQQKLSKIIGILDDSKLQQLL-------------------KKPKKNIPLTQYKHNI 448 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L+ LI +P + + +N ++ ++ L F E++ + Sbjct: 449 TYNIEHILIGLLIQNPKLAKLVPTIQGLETLKHNNIK-IFINLVKLCKFYPNFTTEQLLE 507 Query: 540 RL--CERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + + +D + ++ L++R++ Sbjct: 508 YFYNKKTTNRHYFIILKKLAYWKHIIKDDMIIITFIDTLTKLYNLILEQQQNMLITRER 566 >gi|166154135|ref|YP_001654253.1| DNA primase [Chlamydia trachomatis 434/Bu] gi|166155010|ref|YP_001653265.1| DNA primase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335375|ref|ZP_07223619.1| DNA primase [Chlamydia trachomatis L2tet1] gi|165930123|emb|CAP03607.1| DNA primase [Chlamydia trachomatis 434/Bu] gi|165930998|emb|CAP06561.1| DNA primase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 595 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA V L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTRETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESEQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|76789536|ref|YP_328622.1| DNA primase [Chlamydia trachomatis A/HAR-13] gi|76168066|gb|AAX51074.1| DNA primase [Chlamydia trachomatis A/HAR-13] Length = 595 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 143/590 (24%), Positives = 245/590 (41%), Gaps = 38/590 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+C+ C GD ++FL G SF E+V LA V L V + ++ + L R+ Sbjct: 56 HYHCYGCGEHGDTINFLMKQQGYSFSEAVLFLAKKFHVDLVVRTKETSGQDS-KDSLRRI 114 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL +RG I+ F++GYAP+ R ++ + S Sbjct: 115 NREAERFFQYCLLHLPEGEEALAYLYKRGFSPDTIDRFQIGYAPEQRLFIQAMEE-RNIS 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPE 238 +++ AG L F R++FPI+ + G I F R + G KY+NSPE Sbjct: 174 VKQLEWAGYLAKDWFL------FAQRIMFPIQDALGYTIGFSSRRFKEGGRGGKYINSPE 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TILF K + LY + + K R +ILVEG D L + G +++ Sbjct: 228 TILFKKSRVLYGLQFSRKRIAKERR----------VILVEGQADCLQMIDFGFNCTLAAQ 277 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE + L + L FDGD G +A+ + DL G L G+ Sbjct: 278 GTSFTETHVHELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQ---AAGITAIVCRLPSGQ 334 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ + L + + TP E+A + + + Sbjct: 335 DPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIHSYEQFTPREKARVIEEVIQQVRCWGS 394 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG--K 475 + Y + + ++ ++ S + + K PS Q+S K Sbjct: 395 PITIHEYLRQLASLVKVPEPAVLSYLSSITSAAEDKGKKVSAKEPSSESKQTSTEGKISK 454 Query: 476 LSKKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + EA ++ L+ + Q L+ + E + ++ + + +++ Sbjct: 455 KISPRMILEADVIRCLLFAKPEDEFVPATVKQYLSPEEFHCAEYRAIFVMAMNHYNDRQT 514 Query: 532 F-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +E+ + LL + R++ + ++ + + ++ Sbjct: 515 LPSMDEMMSLVVGTEAMTLL--VARRMNTELMRDIVVQSIQKLLDKHWRD 562 >gi|83310617|ref|YP_420881.1| DNA primase [Magnetospirillum magneticum AMB-1] gi|82945458|dbj|BAE50322.1| DNA primase [Magnetospirillum magneticum AMB-1] Length = 681 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 157/502 (31%), Positives = 238/502 (47%), Gaps = 36/502 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ F+ ++ +P+S ++G+ V ++ ++ CPFH+EKTPSF ND KGF+ Sbjct: 2 IPKGFLDEIRDRVPVSAVVGRRVALAKKGR-----EFTGLCPFHNEKTPSFTVNDDKGFF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ + FL G SF+E+V+ LAA AG+ +P P+ + + L E Sbjct: 57 KCFGCGAHGNAIGFLERAHGLSFVEAVEELAAEAGLEVPKASPEERRDAAARASLYEANE 116 Query: 123 VATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A +F H L + +YL RG+ F+LG+AP+ +LR L + F ++ Sbjct: 117 AACAWFEHQLTTTKAGADALFYLSRRGVAPETRARFRLGWAPNG-DALRRALDAERFPDD 175 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240 +IEAGLL D+ T+ FR R++FPI RG+VI FG RTLS KYLNSP+T Sbjct: 176 LLIEAGLLRRRDDG-TTGAFFRGRVMFPIMDRRGRVIGFGARTLSADPGVPKYLNSPDTP 234 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KG+ LY A + + R ++VEGY+DV+++ Q G V+ LGT Sbjct: 235 LFRKGEVLYGLSHARDGAAEHSRA----------VVVEGYLDVIAMHQGGFPYAVAPLGT 284 Query: 301 ALTEYQLRLLWKLSPR-----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ALT Q+ +W+L+P +L DGD G A +A ++ + L PG + F + Sbjct: 285 ALTPGQVEEIWRLTPDGRGEGPILMLDGDRAGAAAMRRAAEVAVPILRPGRSLRFAQMPE 344 Query: 356 G-EDPDSFIRC--------YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 G +DPD + G + + PL D+LW+ +TP+ A LE Sbjct: 345 GAKDPDELLNPPGDSVGPQEGAFRLASALGAARPLADVLWEALVAEIPPDTPERFAALEA 404 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQ---LFQKYITEHSGYGRYWKKNARHRDQKGPS 463 I D +R Y R RL + + + S R+ A Sbjct: 405 RAYGLAVRINDHAVRRAYLADWRRRLGEAEDMDPPVLRLGSAKTRFAPAKAHLHLGLEWR 464 Query: 464 QRLMQSSLVKGKLSKKPSLREA 485 + L + KG+ S + E Sbjct: 465 RALRDAKGDKGEASPVKAWLEE 486 >gi|187478820|ref|YP_786844.1| DNA primase [Bordetella avium 197N] gi|115423406|emb|CAJ49940.1| DNA primase [Bordetella avium 197N] Length = 674 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 140/487 (28%), Positives = 237/487 (48%), Gaps = 28/487 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P FI+DLL + + +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPESFIQDLLARVDVVDVVGRYVQLRKGGANLL-----GLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQT----D 116 +CF C G ++F+ G SF E+V+ LA G+ +P P+ + + + Sbjct: 57 HCFGCGAHGSAITFMMEHTGASFPEAVRSLAGSVGMTVPEEPRSPRQQAESVRRKAEVSR 116 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++++ A + L+++ YL +RG+ + F LG++ R+ L + Sbjct: 117 HTQVLDAAQAQYLQWLRSS--PEAIAYLKQRGLTGAVAKTFGLGWSGTDRHGLAKVF--D 172 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++EAGL+I+ ++ YDRFR R++FPIR++RG +I FGGR + KGE KYLNS Sbjct: 173 NYDDPTLVEAGLVIESEDGRR-YDRFRERIMFPIRNARGSLIGFGGRIIGKGEP-KYLNS 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG LY + ++ + +I+VEGYMDV+ L Q G+ N V+ Sbjct: 231 PETPIFSKGHELYGLWEGRLAIR----------QAGVVIVVEGYMDVVGLAQLGIGNAVA 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGT+ T ++ L + S ++V FDGD G RAA++A+ L L + F+ L Sbjct: 281 TLGTSTTPDHVKKLLRASDKVVFSFDGDSAGRRAAWRALQACLPVLRDDISIRFLFLPSE 340 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R +G AF + ++ L L + + RA K + I Sbjct: 341 HDPDSYVREFGAEAFRDQMAQASALSRFLLDELASRHNLGEAEGRASCLHEAKPLLAEIP 400 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + L+ + + +L QL + + + + Q+ S + + Sbjct: 401 ECGLKTQIEREMA-KLVQLTPEEMAQALAQHAAQMQAQAAARQQVQSPSAALTPVAPAGD 459 Query: 477 SKKPSLR 483 P Sbjct: 460 DPPPDWA 466 >gi|255994476|ref|ZP_05427611.1| DNA primase [Eubacterium saphenum ATCC 49989] gi|255993189|gb|EEU03278.1| DNA primase [Eubacterium saphenum ATCC 49989] Length = 595 Score = 287 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 137/517 (26%), Positives = 221/517 (42%), Gaps = 38/517 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + + I ++IG+ V R N Y CPFH EKTPSF ++ K F+ CF Sbjct: 4 ETADKIKSGCNIVDVIGKEVKLKREGAN-----YSGLCPFHGEKTPSFKVSEQKQFFKCF 58 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD ++F+ F+E+V++LA + + +K + L + Sbjct: 59 GCGESGDVIAFVMKYYHLDFMEAVKKLADEYSIAIDEGSF---RKGISKAKYYDLTKKVA 115 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 F +L + YL +RG+D + F +G+A + ++ L Sbjct: 116 KQFVTNLFSGSGSSAKAYLLKRGVDEQTMAKFGMGFALNDWANILNSLEDDEKVTAL--- 172 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 L I G SYD+F NR+IFPI VI FGGRTL+ + KYLNS ++++FHK Sbjct: 173 -QLGIIGSKQNRSYDKFVNRVIFPIIDLNRHVIGFGGRTLTDDKGPKYLNSSDSVIFHKK 231 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +LY A + ++K R +LVEGYMDV+S+ QAG+ V+SLGTALTE Sbjct: 232 DHLYGLNIAADNIRKKDRA----------VLVEGYMDVVSMHQAGIDEAVASLGTALTEE 281 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q++LL + + IVL +D D G +A ++AI + G V L +DPD I Sbjct: 282 QVKLLKRFTRNIVLSYDSDAAGKQATFRAIQ---RIVKQGLSPRVVDLGAYKDPDELITE 338 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G+ A+ + S+ +D + + +R E ++ + D Sbjct: 339 EGRDAYLAKLDNSIAYIDFVMDYIEGMHDDSLQGKRDAKEDIIEFL--TVADDMEIAEIG 396 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + I +R I++ R KG S+R+ ++K EA Sbjct: 397 KKISERFNIDEDSLISKVRSAKSNVNHPRRGNANKGASERM---------QNRKKKYVEA 447 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + ++ L + + + + + L Sbjct: 448 GAIALCMSGKKYLGKIVS--SSMNFFTENGYHILEVL 482 >gi|256372041|ref|YP_003109865.1| DNA primase [Acidimicrobium ferrooxidans DSM 10331] gi|256008625|gb|ACU54192.1| DNA primase [Acidimicrobium ferrooxidans DSM 10331] Length = 588 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 138/622 (22%), Positives = 238/622 (38%), Gaps = 68/622 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ + + L+ + V R + CPFHDE++PSF N G Sbjct: 1 MAIADADVRRVRDATDLVALVSETVALRRVGR-----RWVGLCPFHDERSPSFSVNPELG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 YYCF CH +GD ++F+ + G F E+V++LA AG+ + + + L + Sbjct: 56 VYYCFGCHARGDAITFVREVQGLDFTEAVEQLARRAGLRIEHEAAGEPRASTRREALT-V 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E T ++ L +R YL RGI I F++GYAP SR + L Sbjct: 115 LEAQTTWYADQLAGPAGERAREYLAARGISEDQIAKFRIGYAPPSRAASLAELGASAAIA 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNSPE 238 ++ + + +D R++FPIR GQVIAFGGR + KY N+ + Sbjct: 175 LEVG----IRVRGQDGSLHDPMSGRIVFPIREVAGQVIAFGGRVVPPARDGVPKYRNTQD 230 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +HK + LYN A + + R ++ EGY DV++L AGV V++ Sbjct: 231 TAYYHKRQVLYNLDRARSTFLRERRA----------LVCEGYTDVIALDAAGVA-AVATC 279 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALT+ LR+L + +P++V+ FDGDD G RAA + L G + L G D Sbjct: 280 GTALTDDHLRILRRFAPQVVVLFDGDDAGQRAAEQVAPLAE---AAGVELLVATLPGGRD 336 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + + + +P+ +R + + RA + + + D Sbjct: 337 PAEAF-AEDPDSLRQALASPVPVARFRLERVLARADLRSVEGRARAVADVAAVLASVGDP 395 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 +R Y + DR + R + ++ + Sbjct: 396 LVRSEYIAMLADRTGFREAELAARLPSALRPRR--------------------LRTSEAS 435 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQKY 531 A++L+ L + P + L + + + L + L + +E Sbjct: 436 GLDRPAASVLIALASDPGLGDLVVPAL----FRDPTYRALAAALGSRGEAPVAAALEGVG 491 Query: 532 FLPEEIHQRLCERGFGELLKQLD----------RQVRDAGLWSATTEANIVDVRQGYQQA 581 E++ R+ R+A + + + ++ + Sbjct: 492 DDVRELYHRIAASDSEGSFDDALVVLVLREAGVELEREARGLAGLSGPEREERQRRWTDH 551 Query: 582 LALYKRFRLLSRQKEEIEKQIA 603 + R R R + +A Sbjct: 552 IMTLHRLRTEPRDLDAAGALLA 573 >gi|110004381|emb|CAK98719.1| putative dna primase protein [Spiroplasma citri] Length = 626 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 130/655 (19%), Positives = 270/655 (41%), Gaps = 64/655 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + I ++ +Y+ ++R N YWA CPFH + PS + K Y Sbjct: 4 ISNEKIDLIKSKVNIVTVMSEYLSLEKRGRN-----YWAVCPFHQDSHPSMSISPEKQIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 CF+C G+ +FL SFIE+++++A +A + L + + K ++ + + + Sbjct: 59 RCFACSAGGNVFTFLQEYENISFIEALKKVAVMANISLDELTAYQEKPKYDQSEQLIFEI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +A+ +F ++L+ + YL +R I++ IE+F++GYA L L +KG+S Sbjct: 119 NALASAYFSNNLETKKAYDAKEYLTKRNINNTEIELFQIGYAESGFDHLYHFLIKKGYSI 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPET 239 I +AGL+ + YD F NRL+FPI++ VI F GR + + + KYLN+PET Sbjct: 179 NDIQQAGLITIKNG--KVYDYFNNRLMFPIKNEDSYVIGFSGRIIGTTSQVAKYLNTPET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + +YN A +++ + +IL+EGYMDV+SL + ++N V+ +G Sbjct: 237 KVFKKEQLMYNIHRAKPFIR----------QQNNLILLEGYMDVISLEKLDIKNTVALMG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T L+EY L+ + +L+ +L DGD G+ A+ KA + L +V VL +DP Sbjct: 287 TNLSEYHLKEIKRLTNECLLFLDGDKAGIHASLKAA---IKLLSNNLKVKIVLNKTQQDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D + + ++ + ++ + +E E + I + Sbjct: 344 DELVNSGQGELIQTMLANAQHPINFALDYFQNKFNLQAANELEEFFNIVAPLIKASPNPL 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK----------------------KNARHR 457 + + Q T+ Y K + + Sbjct: 404 EQELAVNNLVKITGISKQTITTKIGQIKSYQKAVFSPITSEPIPNVTNDNNYLQRLSTRF 463 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + +++ + K K K+ L E ++L L+ +++ ++ + + + Sbjct: 464 KPQQSKTVVIKKTKYKIKNLKRYLLAEQNMVLQLLASRKAADFYQRKIGNLNF--DGYRL 521 Query: 518 LWSFLFSDFVEQ---KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L + + + + + + + + ++L + + ++ + + Sbjct: 522 LANDIITYYNGHLGAENVKINMLCDEINDPNLKKILMDIINKSTIKIKYNKKELEDYALL 581 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +EI ++ + + + +++ ++ Sbjct: 582 IDDFANE--------------KEIAMLWNKLEKASNLIEQQAISMEIDKLNQRLK 622 >gi|310777991|ref|YP_003966324.1| DNA primase [Ilyobacter polytropus DSM 2926] gi|309747314|gb|ADO81976.1| DNA primase [Ilyobacter polytropus DSM 2926] Length = 597 Score = 286 bits (732), Expect = 6e-75, Method: Composition-based stats. Identities = 144/629 (22%), Positives = 251/629 (39%), Gaps = 40/629 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + + L+ + I ++G+YVD R N + CPFH + PSF + SK Sbjct: 1 MRYNSEDVDKLIEELNIVEVVGEYVDLKRSGAN-----FKGLCPFHKDNNPSFVVSPSKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ + F S F ++++ L+ + + V + + Sbjct: 56 ICKCFVCGAGGNSIKFYSDYNKVPFGQAIKDLSEKYKIKVKPVKGYDVLR-DTNKKYYEI 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A ++F + + + YL +R I K+G+AP +L ++L KG Sbjct: 115 LNDALEYFCEKIFSNEGRDALEYLSKRKFKPDFISENKIGFAPRGWSNLYDYLLNKGHEL 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYLNSPET 239 I+ GL+ + YD FR+R++FPI S G VIAFGGR+L + + KY+NSPE+ Sbjct: 175 NDIVTLGLVKE--GEKGHYDAFRDRIMFPIYSPSGSVIAFGGRSLEDRKDIPKYINSPES 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +FHKG+NLY N +++ I++EGYMDVLS G V+SLG Sbjct: 233 PVFHKGQNLYGIKEKGNIIRRKAYS----------IVMEGYMDVLSAHSFGFDVTVASLG 282 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA TE Q +LL + + ++L FD D+ G AA K+ + G + + L +DP Sbjct: 283 TAFTEDQAKLLKRYTSNVILAFDMDNAGRVAAEKSGII---LKSHGFNIRVLELENAKDP 339 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F++ YGK F K + ES + D L++ ++ + K+ ++ Sbjct: 340 DEFLKKYGKNEFLKSVKESKEIFDYLYEFYSKEYDLTNLMAKQNFVDRFKSFFQSVETDL 399 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + L+ + + KK + K +S + Sbjct: 400 EKSLYIDKLSKSLEIDKELLNDILIINNKKSKKKIKSEIYKQKDFGEKRSEI-------- 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L ++ P ++ + F + + + Sbjct: 452 IDKLEMDTLKIILTKPEYYSYFQEKKIKSNLFHK---------IIVFFSEDHTSGNGVKM 502 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE-EI 598 L F E K+ ++ + + + + D ++ Y + L + +I Sbjct: 503 ILNSDSFEEEEKKQIIEIAASSIEYSDEKKLFKDFKEVYLGWFRREIKETLEKYKIHGDI 562 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQ 627 EKT + L ++ + Sbjct: 563 VSFFKIRKISDNIEKTDTDLEELKNLYRE 591 >gi|289432440|ref|YP_003462313.1| DNA primase [Dehalococcoides sp. GT] gi|288946160|gb|ADC73857.1| DNA primase [Dehalococcoides sp. GT] Length = 588 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 143/625 (22%), Positives = 264/625 (42%), Gaps = 60/625 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 ++++ + I + IGQY + CPFH EK SF ++CF Sbjct: 5 VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C+ GD +F+ G F +++ LA AGV LP + + L + A Sbjct: 60 CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117 Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++H+ L + + + YL+ RG++ ++ F+LGYA L ++L+++ +S+E +++ Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+ I + +DRFRN +I+PI + +GQ+ FG R + KY NSP+T LF K Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LY A ++++ R I+VEGYMD + Q G N V+ +GTALTE Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTNTVACMGTALTER 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+ L+ + + +VL D D G A +AID + + + G+DPD IR Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + ++++++ + PL+D +++ N+ +++L HL I+ ++D + +Y Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLTDHLLPIISKMEDGVRQSHYL 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + + + + + Q +L E Sbjct: 402 GKLAEIVSTSQNRILERLKKLTNETRNAKVTGKEAPSGQAPKNPAL------------EE 449 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L + + Y L + + ++L +++ E + Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604 L + R+ D + NI D + Y L L +R R L+ + + +I Q Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551 Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629 + L +V+ ++ Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572 >gi|313679723|ref|YP_004057462.1| DNA primase [Oceanithermus profundus DSM 14977] gi|313152438|gb|ADR36289.1| DNA primase [Oceanithermus profundus DSM 14977] Length = 586 Score = 286 bits (731), Expect = 8e-75, Method: Composition-based stats. Identities = 155/626 (24%), Positives = 258/626 (41%), Gaps = 59/626 (9%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ + ++ +YV G + CPFH+EKTPSF+ ++ KG +YCF C Sbjct: 5 EEIRSRLDFKAVVERYVPLKPAGK----GRWKGLCPFHNEKTPSFYVDEQKGMFYCFGCK 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD F+ + G F E++++LA GV LP P DLI + +A +F Sbjct: 61 AGGDAFKFVQMIEGVDFREALEKLAQETGVELPERGPAHRPS----KDLIEVNRLALSYF 116 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 + L + YL RG++ IE + LG+AP L L++ + +EAG+ Sbjct: 117 RNHL----EGAALAYLQRRGLEEATIERYALGFAPKRWDGLVNFLKRHDVPLKLGLEAGV 172 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 L + D YDR R R++FPIR G+V+AF GR LS ++ KYLN+PE+ +F K + L Sbjct: 173 LAEKDG--RVYDRLRARVVFPIRDPMGRVVAFTGRALSDEDAPKYLNTPESDVFKKNRLL 230 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + A ++ R I+VEG DVL+L Q G V+ LG+AL+ Q + Sbjct: 231 YGYPEARKSIRDRKRA----------IVVEGLFDVLALAQMGWTETVAVLGSALSPEQAK 280 Query: 309 LL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRCY 366 LL + R+ L FD D+ G RA +D+ + VLL G DP Sbjct: 281 LLERAEAERLYLAFDADEAGRRATLAGLDVGV---ARRFLTFAVLLPEGRDPGDLLTDPG 337 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN-CINHIKDQKLRYYYS 425 GK AF + + ++LP V+ + E NT + + + L + + Sbjct: 338 GKAAFARALDDALPEVEFRFAAAAEGADLNTAEGKRRVLEQLLPRLTDAEPFDPVAEALK 397 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 I DRL + R K P Q + + L E Sbjct: 398 AVIVDRLGLDPRALEDLVHSQRRR----------KRPVVERAQVAAATQDSGDRLLLLEL 447 Query: 486 ALLLTLIN-HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 ++ L+ P L + + + D + + E+ Y + + Sbjct: 448 DVIAQLLAVEPNQLADWVRYVEDHTW--PPDDAFLAEFIRVAEEEGYKPRRILDRFAGRG 505 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 G L ++L + + ++ ++LA R L R++ + + + Sbjct: 506 EGGRLFERLMLSGSEH----------PAEHKEHLDKSLA-RLREGYLRRKRARLTAALKE 554 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630 + E+ ++ + E+ I Sbjct: 555 -----DPERALEILKEIQELDHAIEA 575 >gi|303233345|ref|ZP_07320014.1| DNA primase [Atopobium vaginae PB189-T1-4] gi|302480474|gb|EFL43565.1| DNA primase [Atopobium vaginae PB189-T1-4] Length = 637 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 137/663 (20%), Positives = 258/663 (38%), Gaps = 74/663 (11%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + + L+G++V R+ + D W CCPFH EK+ SFH N G + CF C Sbjct: 7 EKIRQVVNFEQLVGEHVQLTRKGS-----DLWGCCPFHHEKSASFHINPQTGLWKCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD +++ +F ++Q LA G+ L + + L + A F Sbjct: 62 AGGDMFAYVMRAENLNFAGAMQYLADKYGIELSHT--PHARDGIRRNRLFACLAAAEQHF 119 Query: 129 HHSLKNARDK---RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +L + YL RG+ S + + +GYA +L L + GFS ++++ Sbjct: 120 MRTLFTCPQEDVSAARSYLHNRGLTSDICKAWSIGYA-KGDDNLIAALTRSGFSRKELLA 178 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 + + RF NR++F I + + I FGGR + KYLN+ ET LFHKG Sbjct: 179 CDVA--HAGAYGLRSRFFNRVMFAIHDEQSKCIGFGGRVI-NDGKPKYLNTKETPLFHKG 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 K+LY A + + + +I+ EGY DV+++ G N V++LGTALT Sbjct: 236 KHLYAIDKAKDGI----------IQTGEVIVCEGYTDVIAMHTHGFTNTVAALGTALTLN 285 Query: 306 QLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 +RL+ RI+ FDGD G +AA +AI + V+L +DP F+ Sbjct: 286 HIRLIERFARTRIICMFDGDAAGQKAAERAIQ---FIDQTSLALMCVVLPNNQDPCEFLM 342 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 + K + ++ PL++ + + P +R E ++ +K L + Sbjct: 343 SHPKEELASYLSQAEPLMNFVLRHTLARFDMRVPGQRIEALKSAARILSAVKHSLLIDDF 402 Query: 425 SQAIRDRLQQLFQKYITEH---------------------------------SGYGRYWK 451 + + D L + + + + + Sbjct: 403 ATQLADMLALDVTRVKEQIMKTQPMTHPSFSDEPVPSASAPSTATPAAAMQAAPFQHGAQ 462 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 + +G S + +K+ E LL L+ P Q LA I + Sbjct: 463 SADKQATPQGASASQAAHMQLLSSDAKRQYKAEEELLCLLVRTPGAYARYAQPLAAIPWI 522 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 +++ +++ F+ + ++ +C + + +G +TT + Sbjct: 523 DDDHKRIAQFICQHASQ---MDIPQLIDTICAQLPS------AAYILASGRIPSTTTLSQ 573 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 D ++ + + + +EI+ + + + E++ L+ + ++ + Sbjct: 574 DDAISFLLTSI----QIVSSTMRMQEIKSYLKRNSQTLSFEESQALLKQATALQKNVNNL 629 Query: 632 ESQ 634 + Sbjct: 630 KKS 632 >gi|224418411|ref|ZP_03656417.1| DNA primase [Helicobacter canadensis MIT 98-5491] gi|253827729|ref|ZP_04870614.1| DNA primase [Helicobacter canadensis MIT 98-5491] gi|313141941|ref|ZP_07804134.1| DNA primase protein [Helicobacter canadensis MIT 98-5491] gi|253511135|gb|EES89794.1| DNA primase [Helicobacter canadensis MIT 98-5491] gi|313130972|gb|EFR48589.1| DNA primase protein [Helicobacter canadensis MIT 98-5491] Length = 557 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 143/597 (23%), Positives = 259/597 (43%), Gaps = 51/597 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L + I ++ Y++ + + ACCPFH EKTPSF N +KGFY Sbjct: 2 IAEQSIEALKNQLDIIEVVSHYIELKKIGA-----TFKACCPFHQEKTPSFVVNQNKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD ++F+ ++ E++++LA + L K +E R++E Sbjct: 57 HCFGCGASGDSIAFVMQYEKLNYKEAIEKLAQLYNFTLTYEKDKNSFQEDS----YRIME 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +++ +SL K + Y+ RGI + F+LGYA + + + +E Sbjct: 113 FMREYYQNSLT----KEVESYIQSRGITLSTQQKFELGYAGQNYEIMATLQKHSINLQEA 168 Query: 183 IIEAGLLIDGDNSAT-SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L +D +N A Y R RLIFPIRS + +++ FGGRTL KY+NSP+T L Sbjct: 169 LNLGILGVDNENGAKRYYARLTQRLIFPIRSPQNKIVGFGGRTL-GNHPAKYINSPQTKL 227 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + LY + A + K +I+ EGY+DV+ L QAG N V++LGTA Sbjct: 228 FNKSQILYGYPQAKETIYKK----------EEVIVTEGYLDVIMLHQAGFTNAVATLGTA 277 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT+ L LL K +P+++L +DGD+ G+ AA+KA L+ G VL G DP Sbjct: 278 LTKEHLPLLSKGNPKVILAYDGDNAGMNAAFKAASLLSLANKEG---GVVLFDGGLDPAD 334 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++ ++L + S+P +D + + + + P ++ + + H ++ Sbjct: 335 MVKNGDIARLKELFLTSIPFIDFVLEWIIKKYDLDNPLQKDKCLQEALEYLQHF-SLVIQ 393 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + RL+ + + K+ + Sbjct: 394 EDYKGFLAQRLKLPSHLIRIKKNNQKEQIKEPIQSEGS--------------------FD 433 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L E A++ +++ +L+ L + + ++ + L +E + + ++ Sbjct: 434 LAEKAIIKSVLEDMNLLEFVMDFLEPTMFFSQ--KEAYLKLLKGELEDPSLIRILLDNKV 491 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +L +Q+ + N + + L + L + +K ++ Sbjct: 492 KAQDKEKLKQQMIMILYQYYEEQKQKVINEKQLSLREKSFLIRKYQKYLDNLKKGDL 548 >gi|258545970|ref|ZP_05706204.1| DNA primase [Cardiobacterium hominis ATCC 15826] gi|258518775|gb|EEV87634.1| DNA primase [Cardiobacterium hominis ATCC 15826] Length = 564 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 151/572 (26%), Positives = 235/572 (41%), Gaps = 46/572 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ FI +L + L+ + + + +N +WACCPFHDEKTPSF N KG Sbjct: 4 RIPKPFIDELTARTDLLALLSSRITFTKKSGSN-----HWACCPFHDEKTPSFSVNTQKG 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--- 117 FY+CF C V GD + FL F E+++RLA G+ +P D + + + Sbjct: 59 FYHCFGCGVSGDAIRFLMDYDNLPFPEAIERLAEFNGLSVPYEDDGRQVDPQEKDRYDLG 118 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + A FFH + K YL +R + ++ F LGYAP L G Sbjct: 119 LECLADAAAFFHEAFYGESGKAARDYLRQRRLKKATVDTFLLGYAPPGN----ALLAHLG 174 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + + + G YD FR R+IFPI + +G+ IAFG R + KYLNSP Sbjct: 175 SKYPLQLLQDVGLVGVKDDHHYDWFRERVIFPIHNIKGKTIAFGARAM-GEAQPKYLNSP 233 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET F+K LY A+ +++ EGYMDV+ L Q GV+N V++ Sbjct: 234 ETTWFNKRFELYGLHQAMQ------------TRERTLLVTEGYMDVIKLWQHGVKNAVAA 281 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 LGTA+ + + L K + ++ FDGD G +AA KA++ V + F+ + GE Sbjct: 282 LGTAIGDSHISQLRKRAEKVYFSFDGDTAGQKAARKALEAVFSQHDKQHEWRFMFMPAGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIK 416 DPDS + G AF++++ SLP + + + + + +AEL + + + Sbjct: 342 DPDSLVEKAGIAAFQQVMDASLPASAFFLQTLDDGAGAQRSAEAQAELAGEAQRWLELLP 401 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D R + R A P+ R + +V Sbjct: 402 DADFREILRAQVMKRFDLPVLTLSGNA----------ATATHTASPAWRPPREMVVVKPK 451 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 K L LL P + + ++ ELQ W L+ ++ Sbjct: 452 DKGIQLMARLLLQ-----PQCALPLRRW--EYPPEDAELQLFW--LYCYALQSSGADSAH 502 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 L + G E + + + E Sbjct: 503 AEAFLHQHGVYEAVASAAKLLARLDAQQQRDE 534 >gi|73748392|ref|YP_307631.1| DNA primase [Dehalococcoides sp. CBDB1] gi|73660108|emb|CAI82715.1| DNA primase [Dehalococcoides sp. CBDB1] Length = 588 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 147/625 (23%), Positives = 272/625 (43%), Gaps = 60/625 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 ++++ + I + IGQY + CPFH EK SF ++CF Sbjct: 5 VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C+ GD +F+ G F +++ LA AGV LP + + L + A Sbjct: 60 CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117 Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++H+ L + + + YL+ RG++ ++ F+LGYA L ++L+++ +S+E +++ Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+ I + +DRFRN +I+PI + +GQ+ FG R + KY NSP+T LF K Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LY A ++++ R I+VEGYMD + Q G V+ +GTALTE Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTYTVACMGTALTER 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+ L+ + + +VL D D G A +AID + + + G+DPD IR Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + ++++++ + PL+D +++ N+ +++L HL I+ ++D + +Y Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLADHLLPIISKMEDGVRQSHYL 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + Q I E + +NA+ +++ PS + ++ E Sbjct: 402 GKLAEIVSTS-QNRILERLKKLKNETRNAKVTEKEAPSGQAPKNPA-----------LEE 449 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L + + Y L + + ++L +++ E + Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604 L + R+ D + NI D + Y L L +R R L+ + + +I Q Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551 Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629 + L +V+ ++ Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572 >gi|87311288|ref|ZP_01093410.1| DNA primase [Blastopirellula marina DSM 3645] gi|87286028|gb|EAQ77940.1| DNA primase [Blastopirellula marina DSM 3645] Length = 592 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 144/615 (23%), Positives = 239/615 (38%), Gaps = 49/615 (7%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G Y+ R+ Y A CP+H++ PS N + + C+ C + GD SF+ Sbjct: 2 GGYMPLTRQGRI-----YLALCPWHNDTRPSLQVNPDRQSWRCWVCGIGGDIFSFVMRRE 56 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL-KNARDKRL 140 G F E+++ LA A + L P + L A F +L + Sbjct: 57 GIDFREALELLADRANISLTKSAPTQPGSPNDKKTLFAAAAWAERLFQKNLAHSPDADAA 116 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 Y +RG+ ++ F LGYAPD L + FS + GL+ S YD Sbjct: 117 RRYFHDRGVSQDSVNRFHLGYAPDQWQWLVDQAYSTEFSAAVLENVGLIGRSSTSGKPYD 176 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKG---ESVKYLNSPETILFHKGKNLYNFFGALNY 257 RF+ R+IFPI +G+ I FGGR L + ++ KY+NSPET LF K NLY A + Sbjct: 177 RFKGRVIFPIHDVQGRTIGFGGRILPQNTDVKAAKYVNSPETKLFSKSDNLYALDLARDA 236 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317 + + + I+VEGY DV++L QAG++NVV+ LGTAL E + LL + + RI Sbjct: 237 I----------SETRSAIVVEGYTDVIALQQAGIRNVVAVLGTALGERHIHLLRRYADRI 286 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 L DGD+ G R + ++L + + V L DP F++ G AF + Sbjct: 287 YLLLDGDEAGQRRTNEILELFVSEQA---DLRIVTLPDQLDPCDFVQQRGVDAFSAALET 343 Query: 378 SLPLVDMLWKRETE----NRSFNTPDERAELEIHLKNCINHIKDQK-----LRYY-YSQA 427 S+ ++ + T R + +E E + ++D LR + + Sbjct: 344 SVDALEHKLRITTAGVDVRRDLHKANEALESLLSTLARAPRLRDDTGSDVRLREHQFLAR 403 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + + + + S R + R +Q S RL + L Sbjct: 404 LARKFEVDELELRKRLSSLRRATSASVRPPEQADESTRLRAADLDPYD---------RNF 454 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L L P + E+ + +L+ S + ++ ++ Sbjct: 455 LEVLACQPDLTILAADEIGVDEMSSAAAVQLYQTFISACHDGSPVEFTQLLSQIESESLK 514 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 LL +LD + + + + R + +E++ + Sbjct: 515 GLLVELDELATAKKI------IDPETLLKTIIADFKRRYEDREGRDRVTALEQK--NLQP 566 Query: 608 KGEAEKTAILISILH 622 + E + +I Sbjct: 567 QEELDVLQQMIERQR 581 >gi|257470877|ref|ZP_05634967.1| DNA primase [Fusobacterium ulcerans ATCC 49185] Length = 582 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 143/622 (22%), Positives = 258/622 (41%), Gaps = 52/622 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 L+ + I ++G++V+ + + Y CPFH + +PSF + SK CF C Sbjct: 2 LIESLRIEEVVGEFVELKKSGS-----SYKGLCPFHQDTSPSFMVSPSKNICKCFVCGAG 56 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 G+ + F S SFIE+V+ L+ G+P+ +K + +++E A +FF Sbjct: 57 GNPIKFYSEYKKISFIEAVEELSKKYGIPI-KGTRNSKKNNENYDKYYKIMEDAHNFFKE 115 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 + + + YL R ++ I+ +LG+AP+ L +HL KG+ + +I GL+ Sbjct: 116 YIFSNGGREAMEYLAARKLNPKIIKDNELGFAPNKWNELNDHLISKGYELKDLIALGLVK 175 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLY 249 + + YD FRNR+IFPI S G++IAFGGRTL + KY+NSP+T +F KGKNLY Sbjct: 176 E--SENGQYDVFRNRIIFPIYSPTGKIIAFGGRTLENNKEVPKYINSPDTPIFKKGKNLY 233 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 + ++ +L+EGYMDVLS G ++ LGTALTE Q +L Sbjct: 234 GL-----------ERGSMIKKKNYAMLMEGYMDVLSGYLYGFDVALAPLGTALTEEQGKL 282 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L + + I+L FD D G A ++ ++ G + ++L +DPD +++ YGK Sbjct: 283 LKRYTSNIILSFDSDAAGQSATERSGMILKTL---GFNIRVLVLEGAKDPDEYLKLYGKE 339 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 +F K + S+ + D L+K ++ + + K + + Y + Sbjct: 340 SFLKCVKNSVEIFDFLFKYYSKEYDLSNMMSKQNFINRFKEFFQSVDTDLEKSLYLDKLS 399 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +L R + + S + + S E L Sbjct: 400 KQLNIEKDILKETLIDKNRKKSR-----------KIEEVSENISISREEAASKLEELTLG 448 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 ++ + + +K++ +L E + + L + E Sbjct: 449 LILAKNEYFEYFKNKNIKGSLT----RKVFQYLKERDEESNIVRELKDNVELTKAETDE- 503 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQI 602 + + A ++ E + + + + + + +R+ + IE ++ Sbjct: 504 ---WEIVICMAINDFSSEERTNKLLEEIFISWFRIELKEKQRNRENISKTIGLKSIELKL 560 Query: 603 AQVTAKGEAEKTAILISILHEV 624 K + E+ Sbjct: 561 NAADG---FSKILDIYKEYEEI 579 >gi|225851206|ref|YP_002731440.1| DNA primase [Persephonella marina EX-H1] gi|225646354|gb|ACO04540.1| DNA primase [Persephonella marina EX-H1] Length = 548 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 155/589 (26%), Positives = 257/589 (43%), Gaps = 53/589 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M D I+++ + ++I +Y++ ++ +N Y A CPFH EKTPSF + K Sbjct: 1 MAISPDTIEEVRRTANVYDVISEYINLEKAGSN-----YKALCPFHSEKTPSFIVSPQKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G LSFL G SF E+V +LA +P+ EK + L + Sbjct: 56 IFKCFGCGKSGTALSFLMDYEGISFSEAVIKLAQKYNIPVKYT--GTEKNYEHLKGLFSV 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 E F+ LKN+ K + YL +R + S + F LGY+P++ + + + +G Sbjct: 114 TEKIAKFYKDQLKNS--KDVREYLKKREVLSSTADHFDLGYSPENPQLIIDFCKSEGIDL 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EK+ E G++ + D+ + DRFR RLIFPIR RG+V+AFGGR L + KY+NSPET Sbjct: 172 EKLKEVGVVTERDDE-SIVDRFRGRLIFPIRDHRGRVVAFGGRALRESHQPKYINSPETE 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 ++ KGK LY FF + +YL++ +++VEGY+D++SL Q GV+NVV++LGT Sbjct: 231 IYSKGKVLYGFFESKDYLREKKW----------VVIVEGYLDLISLYQTGVKNVVATLGT 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A TEY LL K + VL FD D G + I L V + L+ G+DPD Sbjct: 281 AFTEYHGDLLKKFVNKAVLMFDSDKAGKK---AVIRASKILLSKNIDVYYALIEDGKDPD 337 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + G A E + ++ +D L R + ++ E+ + ++ I ++ Sbjct: 338 DLAK-QGYKAVENTLKKAENFLDFLLNRIKDE---KELKKKGEIIDLYLDMVSVIPEKTK 393 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + + + + + + K + Sbjct: 394 QGLLIKKLSEETGLQESYLELK---------------------KSSTATETEEVKFTDYL 432 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 S E +L TLI L ++ I N + L + + E + + Sbjct: 433 SKTEKLILKTLITKKDELLSRFDRFDKIEGSGN-----FEILVRAILNNEELEEEVLEEI 487 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 L ++ + R W + + + + + Sbjct: 488 LQSEEIVDVDAAVYALERKYRAWLKKENELYLSINSDPDEEFLIKLQEE 536 >gi|148284624|ref|YP_001248714.1| DNA primase [Orientia tsutsugamushi str. Boryong] gi|146740063|emb|CAM80187.1| DNA primase [Orientia tsutsugamushi str. Boryong] Length = 591 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 170/549 (30%), Positives = 269/549 (48%), Gaps = 45/549 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F +++ + +S ++ Q V +R G+Y CPFH EKTPSF ND K Sbjct: 1 MRSTNFFYENIRTILNVSTIVKQKVTLIKRG-----GEYVGICPFHSEKTPSFTVNDRKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + F++ G S+ ES RLA G+ +P+ + EK + + Sbjct: 56 FYHCFGCSAHGDVIKFVADTSGLSYRESALRLAQENGIDIPIFSKEQEKLYEEIDIIHNT 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +FF SL + YL +RG+ IE +K+GYAP + L+E L +G Sbjct: 116 LELAQNFFIASL----SNDIRSYLYDRGLSDLQIEKYKIGYAP-GKNLLQEFLEMRGIPL 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I+++GL I +++ SY+ FR+R++FPI + + I FGGR ++ KYLNSPET Sbjct: 171 AFIVKSGL-IAKNDNGQSYEIFRDRIMFPIINLANKTIGFGGRVINNNSQPKYLNSPETA 229 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A +++ R I+VEGYMD+++L G+ V++LGT Sbjct: 230 VFKKNEALYGEDIATSHIYSKNRA----------IVVEGYMDLIALQSQGIYETVATLGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE L LW++ I+LCFDGD G RA +A+ VL H+ ++F++L G DPD Sbjct: 280 ALTEKHLHKLWQICDEIILCFDGDQAGNRAIQRAVIKVLPHISCSQSMSFIMLPDGLDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ +G T F+KLI L + + LW+ ET + F+T + +A+LE + N I IKD L Sbjct: 340 QLLKQHGITQFQKLIDTRLAVSETLWRLETNGKVFSTAESKAQLEKKINNYIKEIKDWIL 399 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + QL R+ N+ QK ++ L Sbjct: 400 IKNYQTYFKQKYWQL-----------NRFNSNNSYFDKQKLNLNTPTSKEYLEYLLLSL- 447 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +++ P +L + + ++ + N E +L + L + I Sbjct: 448 ----------IVHFPELLNDDVIAENFVNLEFCNKEAYNARKWLIDSISGNNFSLLDSIK 497 Query: 539 QRLCERGFG 547 + E Sbjct: 498 TDITESILK 506 >gi|147669172|ref|YP_001213990.1| DNA primase [Dehalococcoides sp. BAV1] gi|146270120|gb|ABQ17112.1| DNA primase [Dehalococcoides sp. BAV1] Length = 588 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 148/625 (23%), Positives = 273/625 (43%), Gaps = 60/625 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 ++++ + I + IGQY + CPFH EK SF ++CF Sbjct: 5 VEEIKQKLDIVSFIGQYTKLTKAGR-----TMRGICPFHSEKHGSFFVYPEAQNWHCFGA 59 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C+ GD +F+ G F +++ LA AGV LP + + L + A Sbjct: 60 CNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLP--SQINPAIKDQRDRLYEINLSAAQ 117 Query: 127 FFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++H+ L + + + YL+ RG++ ++ F+LGYA L ++L+++ +S+E +++ Sbjct: 118 YYHNLLLNSPQAENARIYLNSRGLNEQSLADFQLGYALADWQGLYDYLKERSYSDEDLLK 177 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+ I + +DRFRN +I+PI + +GQ+ FG R + KY NSP+T LF K Sbjct: 178 AGV-IVRSDEGRIHDRFRNNIIYPIANYKGQIAGFGARVM-DNSQPKYRNSPQTDLFDKS 235 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 LY A ++++ R I+VEGYMD + Q G N V+ +GTALTE Sbjct: 236 SLLYGLHLASASIRENNRA----------IIVEGYMDAIMSHQGGFTNTVACMGTALTER 285 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q+ L+ + + +VL D D G A +AID + + + G+DPD IR Sbjct: 286 QIALIKRQTKNLVLGLDSDSAGEEATLRAID---YENQMESEIRVAVPEGGKDPDELIR- 341 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + ++++++ + PL+D +++ N+ +++L HL I+ ++D + +Y Sbjct: 342 HSPQSWQEILDNARPLLDYIFEHSQRGLDLNSAAGKSKLADHLLPIISKMEDGVRQSHYL 401 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + Q I E + +NA+ +++ PS + ++ E Sbjct: 402 GKLAEIVSTS-QNRILERLKKLKNETRNAKVTEKEAPSGQAPKNPA-----------LEE 449 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L + + Y L + + ++L +++ E + Sbjct: 450 YALSLLFTSAEVTRFAY-NLHPEYLEIPQYRELL-AIYNQSAE--------------KDN 493 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQ 604 L + R+ D + NI D + Y L L +R R L+ + + +I Q Sbjct: 494 LRPCLDENLREYYDNLMNKNPANDNIED--KFYDLCLRLRERYLRNLAVKLNQALSEINQ 551 Query: 605 VTAKGEAEKTAILISILHEVHIQIH 629 + L +V+ ++ Sbjct: 552 PETT----EYQALNDQCVKVNEELR 572 >gi|189183186|ref|YP_001936971.1| DNA primase [Orientia tsutsugamushi str. Ikeda] gi|189179957|dbj|BAG39737.1| DNA primase [Orientia tsutsugamushi str. Ikeda] Length = 591 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 171/549 (31%), Positives = 268/549 (48%), Gaps = 45/549 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M F +++ + +S ++ Q V +R G+Y CPFH EKTPSF ND K Sbjct: 1 MRSTNFFYENIRTILNVSTIVKQKVTLIKRG-----GEYVGICPFHSEKTPSFTVNDRKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + F++ G S+ ES RLA G+ +PV + EK + + Sbjct: 56 FYHCFGCSAHGDVIKFVADTSGLSYRESALRLAQENGIDIPVFSKEQEKLYEEIDIIHNT 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+A +FF SL + YL +RG+ IE +K+GYAP + L+E L +G Sbjct: 116 LELAQNFFIASL----SNDIRSYLYDRGLSDLQIEKYKIGYAP-GKNLLQEFLEMRGIPL 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 I+++GL I +++ SY+ FR+R++FPI + + I FGGR ++ KYLNSPET Sbjct: 171 AFIVKSGL-IAKNDNGQSYEVFRDRIMFPIINVANKTIGFGGRVINNNSQPKYLNSPETA 229 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY A +++ R I+VEGYMD+++L G+ V++LGT Sbjct: 230 VFKKNEALYGEDIATSHIYSKNRA----------IVVEGYMDLIALQSQGIYETVATLGT 279 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE L LW++ I+LCFDGD G RA +A+ VL H+ ++F++L G DPD Sbjct: 280 ALTEKHLHRLWQICDEIILCFDGDQAGNRAMQRAVIKVLPHISCSQSMSFIMLPDGLDPD 339 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ +G T F+KLI L + + LW+ ET + F+T + +A+LE + N I IKD L Sbjct: 340 QLLKQHGITQFQKLIDTRLAVSETLWRLETNGKVFSTAESKAQLEKKINNYIKEIKDWIL 399 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + QL R+ N+ QK ++ L Sbjct: 400 IKNYQTYFKQKYWQL-----------NRFNNNNSYFDKQKLNLNIPTSKEYLEYLLLSLI 448 Query: 481 SLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + P +L + + ++ + N E +L + L + I Sbjct: 449 A-----------HFPELLNDDVIAENFVNLEFCNKEAYNARKWLIDSISGNNFSLLDSIK 497 Query: 539 QRLCERGFG 547 + E Sbjct: 498 TDITESILK 506 >gi|328955628|ref|YP_004372961.1| DNA primase [Coriobacterium glomerans PW2] gi|328455952|gb|AEB07146.1| DNA primase [Coriobacterium glomerans PW2] Length = 664 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 141/679 (20%), Positives = 269/679 (39%), Gaps = 86/679 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + L+ + V+ +R ++W CCPFH EKTPSFH S + Sbjct: 2 ITDEDKDRVRAATDLVQLVQETVEVRQRG-----QEFWCCCPFHGEKTPSFHIIPSTQVW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C + GD +++ SF ES++ LA AG+ L + ++ ++ + E Sbjct: 57 HCFGCGLGGDCFAYIMHRENLSFPESIRFLAERAGIELEERGERSS-SGTKRSRIMDVCE 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+H L +D R Y RGI + ++LG+AP +L HL G++ + Sbjct: 116 ATASFYHTLLMRGKDGRARDYFRSRGIGREVCQRYRLGFAP-GHGALVAHLGGAGYTPHE 174 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +++A + + + DRF +R+IFPI +G+ IAFGGR + +G+ KYLN+ ET +F Sbjct: 175 MVDANVA-LARDGSGLIDRFFDRVIFPIFDEQGRCIAFGGRIMGEGQP-KYLNTAETSIF 232 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HK +NLY F A ++ +I+VEGY D ++ +AG++NVV++LGTAL Sbjct: 233 HKKRNLYGFNWAKEHVVAKA----------EVIVVEGYTDAIACYEAGIRNVVATLGTAL 282 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ ++ L + + R++ F D A + + +L DP F Sbjct: 283 TEHHVKTLTRFAKRVIYLF---DGDAAGQAAAERALRFIERDSIDLRCAILPDNLDPMEF 339 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G A + + S L+ ++++ E + TP R + I +++ + Sbjct: 340 VTERGGEALRERLDRSEELLAFVFRKLEEKSNLGTPAGRVKALEDGCRLIFPLRESYMVD 399 Query: 423 YYSQAIRDRLQQLFQKYI-------TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 Y I D + + + ++ R +S + + Sbjct: 400 AYYMRIADLVGLDIAAVRNSAARVFQQIQHEKQVAQRRDGQRVHMLSPSTRKRSDVDRAA 459 Query: 476 LSKKPSLR-------------------------------------------EAALLLTLI 492 + + E L+ L Sbjct: 460 RTTRIEPDFAERELADSLEAHGASPSAMASDRGVGERPTCLSDLERRALVGERELISLLT 519 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 +P + + + + I + ++ + + + + + + + +C + Sbjct: 520 LYPDMFRPFAERITQIEWVDSRHEAIAWAILATPSGSEPSVVMAAARAVCPQ-------- 571 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 QV G S+T+ AL LY + R+ + Q+ Q +A+ Sbjct: 572 -ADQVAAGGTISSTSVHPTETNIAFLLDALELY----TVRRRLRATQAQLRQDRCS-QAD 625 Query: 613 KTAILISILHEVHIQIHQI 631 + L+ + ++ ++ Sbjct: 626 ERRELMIRASQDTERLREL 644 >gi|157165046|ref|YP_001466239.1| DNA primase [Campylobacter concisus 13826] gi|112801530|gb|EAT98874.1| DNA primase [Campylobacter concisus 13826] Length = 572 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 143/606 (23%), Positives = 247/606 (40%), Gaps = 46/606 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I I N+I QY+ + + Y CPFHD+K PS N +K Y Sbjct: 4 IDPKSIEKLKNQIDIVNIIEQYIPVKKMGS-----SYKCVCPFHDDKNPSMSINQNKQMY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDLIRLI 121 +CF+C GD + F+ ++ E+++++A I+ L D +KE ++ Sbjct: 59 HCFACKAGGDAVKFVMDYEKLTYPEAIEKIAQISNFSLEYTNDKVPTQKENKH-----IL 113 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A F+ Y+ RGI+ IE F+LG+A DS+ ++R + + E Sbjct: 114 EKANAFYRSEFYKNEAA--LRYIKSRGINDAMIEKFELGWAGDSKSTVRLL---QNENIE 168 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + I N Y F R+ FPI S +++ FGGRT+ KY+NSP++ + Sbjct: 169 PKEALEVGIVKQNEKGIYASFIERITFPIYSHTTRLVGFGGRTI-SDHPAKYVNSPQSAV 227 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K K LY + A + + II+ EGY+DV+ L AG N V+ LGTA Sbjct: 228 FDKSKLLYGYHLARQSI----------FEKNQIIITEGYLDVIMLHYAGFTNAVAVLGTA 277 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT L LL + +VLCFDGD G+ AA K+ L I V++S G DP Sbjct: 278 LTTSHLPLLKRGEISVVLCFDGDGAGINAAIKSAHL---LSINKIDTKVVIISNGADPAD 334 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + +L V ++ + P +R +K ++ + ++ + Sbjct: 335 MVFAGKIKELNELFGSGEDAVKFYIEKIMQKYDITRPVQRDNCLSEIKAYMDELGEE-IA 393 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK--K 479 Y + R Q + + R+ + + +S++ ++ Sbjct: 394 SSYVTEVAARFNLTPQSVADRFGLKQKPKNEAKFKREFRKKEKDEFSNSVMVDEVPAVMN 453 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIH 538 E AL T++N+P E +L + + E + + + E + Sbjct: 454 KDPLEFALFKTMLNNPNYRDEILSKLGARYFIKHPEY---LNAILYRY---DVSDEEMVR 507 Query: 539 QRLCERGFGELLK--QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + E++ L + + + + E I+ + L K L + Sbjct: 508 EILMDENIHEIIDPTTLQKAILNMQIAFYENEQQILKGSDNPNKIEILEK----LLFIIK 563 Query: 597 EIEKQI 602 +++ Q+ Sbjct: 564 DLKTQL 569 >gi|294649578|ref|ZP_06726997.1| DNA primase [Acinetobacter haemolyticus ATCC 19194] gi|292824517|gb|EFF83301.1| DNA primase [Acinetobacter haemolyticus ATCC 19194] Length = 625 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 157/685 (22%), Positives = 272/685 (39%), Gaps = 123/685 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L+ G+ LP + +K ++ Sbjct: 56 YYHCFGCQANGNAIRFLMDIDSRNFIDVMKDLSNQTGIELPKDNHDNKKLSYKRSPQTPP 115 Query: 116 --------------DLIRLIEV-------------------------------------A 124 + ++ Sbjct: 116 SPPEKISPPSTTDHAIHEPMDEHFVDMDRFMDDPFAQFDPGFGMDEQVQEGNLYDLLENV 175 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ L ++ Y RG+ + I+ ++LGYAP+ HL + + + + Sbjct: 176 AQFYERQL--PHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQ----HLEKAFPQDIEGL 229 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK Sbjct: 230 KQIGLIRSSDSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSPDSEIFHK 289 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LY + ++ ++VEGYMDV++L Q G+ V++LGTA Sbjct: 290 NQLLYGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNA 337 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR Sbjct: 338 DHLNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIR 397 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423 G F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY Sbjct: 398 REGLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYL 457 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +Q+ R++L + + + + Sbjct: 458 LTQSFREKLGLGKRFTPQISHDASLSFNIHTKD--------------------------- 490 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E + L++HP L ++EL + N L K+ + L F +E+ Sbjct: 491 EDFAIAILMHHP-FLYIHFEELRAVIDQNEPLAKILAALNIVF--DDLPDDQELATYYVL 547 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 +L ++ + S T +V + +L + + L + + I Sbjct: 548 GACSHYSHELADIMQRTNIESLTE---APEVADKLARDFSLNLQEKYLRLKLKSPISLI- 603 Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 604 ---------ESRNLRQQLNELTKQI 619 >gi|260494275|ref|ZP_05814406.1| DNA primase [Fusobacterium sp. 3_1_33] gi|260198421|gb|EEW95937.1| DNA primase [Fusobacterium sp. 3_1_33] Length = 602 Score = 284 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 156/615 (25%), Positives = 269/615 (43%), Gaps = 31/615 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF N K Sbjct: 1 MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTNI--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MENSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K S KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F++ GK AF K++ SL + D L+ + N + K+ ++I++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + +++ R R ++ K K+ Sbjct: 399 EKEMYLKKLSEKIDISID--------ILRKPLIEKNKRHIVKKDYFDENQEKIEKKEFKQ 450 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E A++ L+ P +E + N + + + + +E Sbjct: 451 ANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFKN 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E ++ + R + +T + + + +L + K++I Sbjct: 511 YIEESNEFSQYEKNNELARIIMDYISTPDQIEEERENTELFKSYFRVKVKLRDKTKDDIN 570 Query: 600 KQIAQVTAKGEAEKT 614 K++ K E EKT Sbjct: 571 KKVKFGKLKKEIEKT 585 >gi|15834795|ref|NP_296554.1| DNA primase [Chlamydia muridarum Nigg] gi|270284961|ref|ZP_06194355.1| DNA primase [Chlamydia muridarum Nigg] gi|270288986|ref|ZP_06195288.1| DNA primase [Chlamydia muridarum Weiss] gi|301336359|ref|ZP_07224561.1| DNA primase [Chlamydia muridarum MopnTet14] gi|9910826|sp|Q9PLC9|PRIM_CHLMU RecName: Full=DNA primase gi|7190211|gb|AAF39049.1| DNA primase [Chlamydia muridarum Nigg] Length = 600 Score = 284 bits (725), Expect = 4e-74, Method: Composition-based stats. Identities = 153/614 (24%), Positives = 259/614 (42%), Gaps = 43/614 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + ++ L I I +++G+YV R DY ACCPFHDEKTPSF ++G Sbjct: 1 MYYTEESLETLKHSIDIVSVLGEYVHLKRSGA-----DYKACCPFHDEKTPSFIVYPTRG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIR 119 Y+C+ C GD ++FL G SF E+V LA V L + E + + L R Sbjct: 56 HYHCYGCGEHGDAINFLMKQQGYSFSEAVLFLAKKFHVDLVIKTKTKESSGQDSKECLRR 115 Query: 120 LIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + A FF + L YL +RG I+ F++GYAP+ R +R +G Sbjct: 116 INKEAERFFQYCLLCLPEGGEALSYLYKRGFSLDTIDRFQIGYAPEQRVFVRAMEE-RGI 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSP 237 S +++ AG L F R++FPI+ S G I F R + G+ KY+NSP Sbjct: 175 SVKQLEWAGYLSKDWFL------FAQRIMFPIQDSLGYTIGFSSRRFKEGGKGGKYINSP 228 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET+LF K + LY + + K R +ILVEG D L + G +++ Sbjct: 229 ETLLFKKSRVLYGLQFSRKRIAKEKR----------VILVEGQADCLQMIDFGFNCTLAA 278 Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 GT+ TE ++ L + L FDGD G +A+ + DL G V L G Sbjct: 279 QGTSFTETHVKELVKLGVSKAYLLFDGDAAGEKASLRVGDLCQV---AGIAVIVCRLPSG 335 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DPDSF+ G +L+ + L + + TP E+A + + + H Sbjct: 336 QDPDSFLMQRGPEELRELLDRGEDYLSFLVWHKIRSYEQFTPREKARVVEEVIQQVQHWG 395 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKG 474 + + Y + + ++ ++ S + + D K P + G Sbjct: 396 SPIMIHEYLRQLASLVKVPEAAVLSYLSSIKSATEDKGKKADAKEVCPDPEATAVAYKGG 455 Query: 475 KLSKKPSLR---EAALLLTLI-NHPA---ILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 K SKK S R EA ++ L+ P + L+ + E + ++ + + Sbjct: 456 KASKKISPRMILEADVIRCLLFAKPEEEFVPATVRHYLSPEEFHCIEYRSIFVMAMNHYN 515 Query: 528 EQKYF-LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E+ +++ + LL +DR++ + +A + + ++ Sbjct: 516 EKHMLPSMDDMMALVWGTEAMTLL--VDRRINTELMRDIVVQAIQKLLDKHWRD--RKRN 571 Query: 587 RFRLLSRQKEEIEK 600 + ++ + +++ Sbjct: 572 FCHQMGKELDSLQE 585 >gi|226953432|ref|ZP_03823896.1| DNA primase [Acinetobacter sp. ATCC 27244] gi|226835815|gb|EEH68198.1| DNA primase [Acinetobacter sp. ATCC 27244] Length = 625 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 155/687 (22%), Positives = 271/687 (39%), Gaps = 127/687 (18%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +Y+CF C G+ + FL + +FI+ ++ L+ G+ LP + +K ++ Sbjct: 56 YYHCFGCQANGNAIRFLMDIDSRNFIDVMKDLSNQTGIELPKDNHDNKKLSYKRSPQTPP 115 Query: 116 --------------DLIRLIEV-------------------------------------A 124 + ++ Sbjct: 116 SPPEKISPPSTTNHAIHEPMDEHFVDMDRFMDDPFAQFDPGFGMDEQVQEGNLYDLLENV 175 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F+ L ++ Y RG+ + I+ ++LGYAP+ HL + + + + Sbjct: 176 AQFYERQL--PHSQKAQNYFKHRGLSAQTIQFWRLGYAPEDWQ----HLEKAFPQDIEGL 229 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + LI +S +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK Sbjct: 230 KQIGLIRSSDSGRDFDLLRDRVIFPIRDHKGRVVGFGGRALNDDIKPKYINSPDSEVFHK 289 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LY + ++ ++VEGYMDV++L Q G+ V++LGTA Sbjct: 290 NQLLYGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNA 337 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR Sbjct: 338 DHLNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIR 397 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423 G F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY Sbjct: 398 REGLENFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYL 457 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +Q+ R++L + + + + Sbjct: 458 LTQSFREKLGLGKRFTPQISHDASLSFNIHTKD--------------------------- 490 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E + L++HP L ++EL + N L K+ + + + E + Sbjct: 491 EDFAIAILMHHP-FLYIHFEELRAVIDQNELLAKIL-AVLNIVFDDLPDDQELATYYVLG 548 Query: 544 RG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L + ++ L A +V + +L + + L + + Sbjct: 549 ACSHYSHELADIMQRTNIESLTEAP------EVADKLARDFSLNLQEKYLRLKLKSPISL 602 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQI 628 I ++ L L+E+ QI Sbjct: 603 I----------ESRNLRQQLNELTKQI 619 >gi|257784628|ref|YP_003179845.1| DNA primase [Atopobium parvulum DSM 20469] gi|257473135|gb|ACV51254.1| DNA primase [Atopobium parvulum DSM 20469] Length = 655 Score = 283 bits (724), Expect = 5e-74, Method: Composition-based stats. Identities = 146/659 (22%), Positives = 255/659 (38%), Gaps = 86/659 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + L+ + V+ R DYW CCPFH EK+PSF N S G + Sbjct: 2 ITDEDKERVRQATDFVTLVSETVELKPRG-----QDYWGCCPFHQEKSPSFKINPSTGLW 56 Query: 63 YCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +CF C GD S++ F ++++ LA AG+ L K + LI + Sbjct: 57 HCFGACSEGGDVFSYVMKRENLDFPDAIRYLADKAGITLSEEAHVS--KGPRKNRLIECL 114 Query: 122 EVATDFFHHSLKNARD---KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A ++FH L R + YL RG + + +KLGYAP R +L HLR+ GF Sbjct: 115 TEAENYFHSMLMRGRGEGPETARAYLSGRGFGAGVCKRWKLGYAP-GRGALVAHLRKCGF 173 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSP 237 + ++++ A L ++ + + D F +R++FPI +G+ IAFGGR T + KYLN+ Sbjct: 174 TTQEMVAANLAVERNGRIS--DWFYDRVMFPIHDEQGRTIAFGGRITKKVENAPKYLNTR 231 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +T +F+KGK+L+ + A + S I+ EGY DV+++ +AG N V++ Sbjct: 232 DTTVFNKGKHLFAYDVAKETIAAQ----------SEAIICEGYTDVIAMHEAGFTNTVAA 281 Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTA T ++L+ + + +I+ FDGD G AA ++ V+L Sbjct: 282 LGTAFTSEHVKLIDRQRARKIICMFDGDAAGQHAA---ARVIKFIDKTTAAFLCVVLPNN 338 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +DP F+ G ++ + PL+D ++ T + P R + L + + +K Sbjct: 339 QDPMEFLAESGAEKLRPILDSARPLMDFVFDATTAEFDLSVPGGRVKALEALASLLAPLK 398 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 L Y+ + D L ++ + + Q S L Sbjct: 399 TSVLLSEYALRVADLLHIDAEEAKRAIKAAPIQDDASNFRTSKSARKQSQKMSYNTSNNL 458 Query: 477 SKKPSLR--------------------------------------------EAALLLTLI 492 + S E LL + Sbjct: 459 TYTKSPVYVEAPSYDEVPPYDEASTYDVPADVRVPSGTQGLSAEDRRQVNSELELLSAMA 518 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + ++++E +AD + + Q + + + E E +L Sbjct: 519 TNLSLVREYQDRIADFVWADARHQTMAWAMLATP-EGATPAQVVAAAVAVEPNAAAILSS 577 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 G + ++ + + + + R+ EI + + GE Sbjct: 578 --------GRVISEGNSDTRRSLEFIVDTVD----YYSVQRKLREIRSNLRSGSYTGEQ 624 >gi|108804339|ref|YP_644276.1| DNA primase [Rubrobacter xylanophilus DSM 9941] gi|108765582|gb|ABG04464.1| DNA primase [Rubrobacter xylanophilus DSM 9941] Length = 583 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 155/652 (23%), Positives = 248/652 (38%), Gaps = 88/652 (13%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDS 58 M R I++L + I + ++ R+ + CP+ H EKTPSF + Sbjct: 1 MRISRQSIEELREAVDIVEVASEFTALRRQGA-----RFVGLCPYPDHQEKTPSFSVSPD 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTD 116 KGFYYCF C GD + + L F E+V LA + L + + Sbjct: 56 KGFYYCFGCSRGGDAIKLVEELKSLPFAEAVAHLAERYNIELRFEGATEPSRDRANRRRA 115 Query: 117 LIRLIEVATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + + + A ++H L + YL RGI S IE F+LG+AP S Sbjct: 116 IHKALAAAAVYYHKVLLKMPSQETERARRYLAGRGISSSTIEEFRLGFAP-SSGGFVRAA 174 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 + G E + AGL +RF R+ FPI RG+++ FG R L +G KY Sbjct: 175 ARLGLGREVLEAAGL-----LGRGGRERFAGRITFPISDRRGRIVGFGARVLGEG-GPKY 228 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSPET +F K LY F + +++ ++VEGY DVL L QAG++N Sbjct: 229 LNSPETEVFDKRNLLYGFPQVMEAMRR----------ERSALVVEGYTDVLMLHQAGIKN 278 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V++LGTA+T LRLL + I + FD D G +A +A+ + + Sbjct: 279 AVATLGTAITPSHLRLLSGYADEIYMLFDPDAAGEKAVERAVAAASELKLGLKVLRLP-- 336 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 EDP ++R + F +L+ + P + +++R+ E RA +K + Sbjct: 337 ---EDPADWLRGHAGEEFVRLLPGAEPALHYVFRRKAERARSADTVGRARALEEMKGLVA 393 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I+D R+ + + L +G +A Sbjct: 394 RIEDPVFRHEALRLASEALGVAPHALFAAGAGRAERQPASA------------------- 434 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE------------LADIRYDNNELQKLWSF 521 G L +L T++ P + + +E L + + +L+ Sbjct: 435 GGLRDPYEEAGRDVLATMLARPDLAADLLREGVAVPGLGAPLRLVPEDFATDRQGRLFGL 494 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + R F +LL L ++ A Sbjct: 495 L----QRRPGVALDRLVVDEELRPFVDLLASLSE--------------AGERLQPSAASA 536 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 L+ R +LSRQ+++ Q E I +L E I E+ Sbjct: 537 RELWLRLGILSRQRKK-----RQTDDISRKETLQAEIQLLREAQRSIASREA 583 >gi|329769785|ref|ZP_08261186.1| hypothetical protein HMPREF0433_00950 [Gemella sanguinis M325] gi|328838147|gb|EGF87765.1| hypothetical protein HMPREF0433_00950 [Gemella sanguinis M325] Length = 599 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 141/633 (22%), Positives = 262/633 (41%), Gaps = 44/633 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + +I I +L+ +Y+ ++R N Y CPFH+EKTPSF + K Sbjct: 3 KISKQDIDYIFENIDIVSLVSEYIKLEKRGQN-----YLGLCPFHNEKTPSFTVSPDKKI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 +CF C G+ F+S + ++ +++ +L G+ L D K + + Sbjct: 58 AHCFGCGKGGNIFQFVSLIENITYNQAIVKLGTRLGLNLESNDNKEVSYDLNNKLDSMYY 117 Query: 120 LIEVATDFFHHSLKNARDKR-LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + D++++ L N ++ + YL +RG+ I+ F +GYAP + Sbjct: 118 GHLLLADYYNYILLNTKEAQGALNYLIDRGLSIETIKHFNIGYAPRDNNIALNFFKSNNL 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 + + ++EAGLL DN+ YD F++R++FPI++++ QV+AF GRT+S+ + V KY N+ Sbjct: 178 NLDAMVEAGLLGKNDNND-YYDVFKDRIVFPIKNNQNQVVAFSGRTMSQDKQVAKYYNTH 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K LYNF A ++ K IIL EGYMDV+ Q GV+NVV+ Sbjct: 237 ETKIFEKRTVLYNFSDARAFIAK----------EREIILCEGYMDVIKAHQNGVKNVVAL 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT + +L + L ++ L D D G ID+ + + V + + + Sbjct: 287 MGTNIDNNKLVEVLNLVDKVTLSLDNDKAG---TEAQIDIGNRIIQKIDNVYKLKFTGAK 343 Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 D D F+ + + + N S + +++ + + + I Sbjct: 344 DLDEFLTEKKSKNSEFDTQSYVANNKDHFIKFKIDYCNNESKSNIEQKIKFKNEILKNIA 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 I D+ L+Y + + Q E + + + + L +++ Sbjct: 404 FIGDESLKYILLTYLSEEFDIDRQVLTRELNKFPTRKLRTTQEWTAPEKPLNLFKTTNYD 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + L A + + EL ++D ++L +L + F Sbjct: 464 KKVCR--------LFKYFFVSRAAFIDNFTELEQCKFDQEVFERLIDYLIIYYNNNLDFR 515 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + E++ +L + + + +V + Y KR L + Sbjct: 516 IHNFIHSIENTEDEEVV-RLATYIDETD--FLIEDEPPKEVIRDYIDYFK--KREISLEK 570 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 KE ++ I ++ + E L+ L E Sbjct: 571 LKEMLKIAIQEM----DVEAQKQLLEQLKEYKK 599 >gi|149194635|ref|ZP_01871731.1| DNA primase [Caminibacter mediatlanticus TB-2] gi|149135379|gb|EDM23859.1| DNA primase [Caminibacter mediatlanticus TB-2] Length = 545 Score = 282 bits (722), Expect = 9e-74, Method: Composition-based stats. Identities = 140/585 (23%), Positives = 252/585 (43%), Gaps = 63/585 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L I I ++I Y++ + +N Y A CPFH EKTPSF + +K Y Sbjct: 2 ISKESIENLKSIIDIVDVISNYIELKKTGSN-----YKALCPFHSEKTPSFVVSPAKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ + S+ E++++LA + L I L+E Sbjct: 57 HCFGCGASGDAIKFIMEIEKLSYKEAIEKLATMYNFKLTYTSNNNFLS-------IDLLE 109 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F+ L K + YL +RG+ IE F+LGYAP+S + + ++++ Sbjct: 110 KVNNFYKGELYKQ--KEAYEYLKQRGLFDSTIEKFELGYAPESA-KQLKFFKDANLNKKE 166 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +I G+L++ + Y R R+ FPI S G++IAFGGRT+ KY+N T +F Sbjct: 167 LINLGVLVENGD----YPRLIQRITFPIFSQSGKIIAFGGRTI-TNHPAKYINFTNTKIF 221 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K Y A ++ + I+VEGYMDV+ L QAG++N +++LGTAL Sbjct: 222 NKSKTFYGLNFAREHILRQ----------KEAIIVEGYMDVIMLHQAGIENSIATLGTAL 271 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L +L K++P++ + +D D G+ AA KA L+ G VL DP Sbjct: 272 TKEHLPILKKINPKVKIAYDSDLAGINAAIKASKLLFSDFFDG---GVVLFPENLDPADV 328 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ G K +P D + + + E+ + K I + + L+ Sbjct: 329 VKSGG--EINKFFENEIPFSDFIIDFTIKKYNIKNVLEKKKAIDEFKEYIASLP-EILKE 385 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 +S + RLQ + + S L+KK + Sbjct: 386 DFSIKVSQRLQIS---------------------PNMLKAKSKHTISHTQNINLNKKIDV 424 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 EA+++ TL + + + L+ ++ ++ ++ + E L + + Sbjct: 425 AEASIIKTLYENKEWMDNIVEYLSPEMFNT--HKEELQLVYQEDFENPKLLDIVLRDDIM 482 Query: 543 ERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + ++++ L R+ + + D + + + Sbjct: 483 TLDYDTLKKQIIRLLIPYYRNKLIQIRFDNSINSDEKAHLMKIIN 527 >gi|325281219|ref|YP_004253761.1| DNA primase [Odoribacter splanchnicus DSM 20712] gi|324313028|gb|ADY33581.1| DNA primase [Odoribacter splanchnicus DSM 20712] Length = 1305 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 120/462 (25%), Positives = 200/462 (43%), Gaps = 27/462 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + I + I ++IG Y+ ++ N YW CPFH EKT SF + +K Sbjct: 1 MQIPPEIIDKIRQAADIVDIIGSYITLKKKGAN-----YWGPCPFHSEKTASFSVSPAKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 + CF C G+ +FL G SF E+V++L + +P P+ +K + L Sbjct: 56 IFKCFGCGEGGNVFTFLQKYDGLSFPEAVRQLGKKYNIEIPENELTPEELEKIHRRESLQ 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++ AT FF + + + +E + +GYAP S LR+ L+++G+ Sbjct: 116 VVLRAATHFFR-QHQTDKTAEKYLISRGFTPGDKILEQYHIGYAPAS-NKLRDELQRQGY 173 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236 + + + L+ D D+F++R++FPI + G I F R ++ + KY NS Sbjct: 174 DLQLLQDNSLIKD--GKNGPEDKFQDRIMFPIFNLTGNPIGFQSRRINDALTKIPKYCNS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 LF KG ++ + A + + + VEG DVL+ +A + N V Sbjct: 232 DNNELFCKGSIIFGLYQARGAISR----------EDKVYWVEGQFDVLTFVKAEIPNTVC 281 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 GTA+TE Q+R L + + I L +DGD+ G AA K I + G V V L G Sbjct: 282 GSGTAMTEEQIRTLLRFTRNITLIYDGDNAGQEAAQKNI---TALIEQGAIVRCVKLPTG 338 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF R +K + + + E F+ P+ + + + I ++ Sbjct: 339 EDPDSFARKMNPADLKKYLKK-QEKDFASFLAELNEPHFHDPELKEKCLEEICRLIAFLR 397 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 + L+ Y + I ++ + A +D Sbjct: 398 KESLQASYIKNIVKIFDLDEAIIWSKIRETVKSLPAEAYIKD 439 >gi|319789699|ref|YP_004151332.1| DNA primase [Thermovibrio ammonificans HB-1] gi|317114201|gb|ADU96691.1| DNA primase [Thermovibrio ammonificans HB-1] Length = 543 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 148/601 (24%), Positives = 241/601 (40%), Gaps = 76/601 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 F+++LL + I +++ Y+D + N + A CPFH EKTPSF + K Sbjct: 5 KVSHSFVQELLSRVDIVDIVSHYIDLKQSGRN-----FKALCPFHPEKTPSFVVSPEKQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C V G+ ++F+ F E+V+R+A IAG+ LP +++ + L Sbjct: 60 FKCFGCGVGGNAITFVEKYENLPFWEAVKRVAEIAGIELPK---DAFREDSKELHLEETA 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +F+ L+ + YL ERGI + F LGYAP +LR+ E Sbjct: 117 YRVAKYFNSKLET-----VLNYLKERGISKETADRFLLGYAPPG------YLRELNLKRE 165 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPETI 240 + GL+ + F+ RLI PI + G+V++F GR L+ G+ + KY+N PET Sbjct: 166 EAELLGLVGKNGK-----EFFKGRLIIPIFNHSGKVVSFAGRVLNGGDGAPKYINGPETE 220 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K LY F+ A + + II+VEGY DV+SL QAGV+ V+ +GT Sbjct: 221 LFKKSNLLYGFYQAKEEVLRK----------REIIVVEGYFDVISLYQAGVRRAVAPMGT 270 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LTE R + + SP VL FD D G +A +A + G V L GEDPD Sbjct: 271 SLTENHARFIKRYSPSPVLLFDADSAGRKATLRAAQIFFSL---GCEPRVVQLPDGEDPD 327 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S R L+ P + + E+ + + L Sbjct: 328 SMARSRLPE-LLALLESPQPFIKWAVAVASALSREQQALFLKEVGQAIAPLERS--NPFL 384 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + + N P Sbjct: 385 YREYLALLAAEFGIDESWLKVRVAVRRQESHDNGIS-----------------------P 421 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 L E + L+ L E++ + + +L++ L P E+ + Sbjct: 422 PLYEKLFIKALVEGKGSLPI---EVSPNIFISPVSARLYTLL-----SSGGTDPVEL--Q 471 Query: 541 LCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + +L +V DA + + I ++++ ++ + + R L R +E Sbjct: 472 LQFPDLADYISELMLLEVTDADINRSLCRVAIKELKRRLKK-VKDFSRKVELKRLIFRLE 530 Query: 600 K 600 + Sbjct: 531 R 531 >gi|332672801|gb|AEE69618.1| DNA primase [Helicobacter pylori 83] Length = 559 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 147/600 (24%), Positives = 244/600 (40%), Gaps = 53/600 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEGYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKIYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDRAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ++ L+ ++L + + + E L ++ Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + L + + L +++ + +L ++ L + ++ I K Sbjct: 496 LLDANLP-----LKKGGFEKELRLLILRYFERQLKEISKSSLPFSQKMIFLKKARQAIMK 550 >gi|256845591|ref|ZP_05551049.1| DNA primase [Fusobacterium sp. 3_1_36A2] gi|256719150|gb|EEU32705.1| DNA primase [Fusobacterium sp. 3_1_36A2] Length = 603 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 273/632 (43%), Gaps = 41/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 ++ GL I YD FRNR+IFPI S G++IAFGGRTL K ++ KY+NSP+T Sbjct: 174 GDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ GK AF K++ SL + D L+ + N + K+ ++++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + + ++ ++ K K Sbjct: 399 LEKEMYLKKLSEKIDINVDILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ LI P +E + N + + + + EI Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510 Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-L 591 + E L ++ N + ++ L L + + + Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDNI 570 Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 +++ E +++K+IA+ + E K L Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602 >gi|237744141|ref|ZP_04574622.1| DNA primase [Fusobacterium sp. 7_1] gi|229431370|gb|EEO41582.1| DNA primase [Fusobacterium sp. 7_1] Length = 602 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 155/615 (25%), Positives = 270/615 (43%), Gaps = 31/615 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF N K Sbjct: 1 MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTNI--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MENSHNFFMEKIFLQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K S KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F++ GK AF K++ SL + D L+ + N + K+ ++I++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + +++ + + D+ ++ K K+ Sbjct: 399 EKEMYLKKLSEKIDISIDILRKSLIEKNKRHIVKKDYFDENQEK--------IEKKEFKQ 450 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E A++ L+ P +E + N + + + + +E Sbjct: 451 ANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFKN 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E ++ + R + +T + + + +L + K++I Sbjct: 511 YIEESNEFSQYEKNNELARIIMDYISTPDQIEEERENTELFKSYFRIKVKLRDKTKDDIN 570 Query: 600 KQIAQVTAKGEAEKT 614 K++ K E EKT Sbjct: 571 KKVKFGKLKKEIEKT 585 >gi|237742312|ref|ZP_04572793.1| DNA primase [Fusobacterium sp. 4_1_13] gi|229429960|gb|EEO40172.1| DNA primase [Fusobacterium sp. 4_1_13] Length = 603 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 274/632 (43%), Gaps = 41/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K ++ KY+NSP+T Sbjct: 174 EDLLSLGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + + I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYTSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ GK AF K++ SL + D L+ + N + K+ ++++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + + ++ ++ K K Sbjct: 399 LEKEMYLKKLSEKIDINVDILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ LI P +E + N + + + + EI Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510 Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591 + E L ++ N + ++ L L + + + Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDDI 570 Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 +++ E +++K+IA+ + E K L Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602 >gi|296273886|ref|YP_003656517.1| DNA primase [Arcobacter nitrofigilis DSM 7299] gi|296098060|gb|ADG94010.1| DNA primase [Arcobacter nitrofigilis DSM 7299] Length = 545 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 139/602 (23%), Positives = 248/602 (41%), Gaps = 66/602 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I++L ++ I + I Q++ + N + ACCPFH E TPSF + +K Y Sbjct: 2 INKDSIENLKNNVDIVDTISQFLQLKKSGAN-----FKACCPFHGESTPSFVVSPAKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C V GD + F+ S+ E++++LA++ L D + +K++ IE Sbjct: 57 HCFGCGVGGDSIKFVMEYEKLSYPEAIEKLASMNNFTLVYDDTEQKKQDTK------AIE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++ + + Y+ RGI +IE F++GYAP S ++ +L+ K + Sbjct: 111 EINKYYKKNF--VVNDTAKEYIKSRGIYESSIEKFEIGYAPSSGETI-NYLKSKFLNLND 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L I + Y RF R+ FPI S G ++ FGGRT+ G + KY+NSP+T +F Sbjct: 168 AK--ELGIIDTGANGLYARFIERITFPIYSLNGGLVGFGGRTI-TGHNAKYVNSPQTKIF 224 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K + LY + + II+ EGY+DV+ L QAG N V++LGTAL Sbjct: 225 NKSRLLYGYNL----------SKEKIYKKKEIIITEGYLDVIMLHQAGFDNAVATLGTAL 274 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L +L + PR+++ +DGD+ GL AA+KA L+ + G ++ +G DP Sbjct: 275 TKDHLPILKRGEPRVIVAYDGDNAGLNAAFKASLLMAHNDFEG---GVIIFEKGFDPADM 331 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ K+ + P + N P + + + +N + + Sbjct: 332 VKDGKIEELNKIFSKPKPFIPFTIDHIISQFDLNDPQNKQKALHEVNEFLNTL-NAIYHD 390 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 YS+ I +L S R K + Sbjct: 391 EYSRYIAQKLNIRENLIKITKSTTNRNN-----------------------NVQLSKVDI 427 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ ++N L + + + + + L ++ + +RL Sbjct: 428 GELCIIKAILNDKNRLSSVLDIIDASMF--DYHKNEFEILLTNIDD----------ERLN 475 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E L+ D + +A L + + + + L R+ + + Sbjct: 476 SVLLNERLEDYDDERLNAELLILLGKFYSNKLNEVLYDKNYTFNEKSSLIRKIRDNISML 535 Query: 603 AQ 604 + Sbjct: 536 KK 537 >gi|34763653|ref|ZP_00144581.1| DNA primase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294785120|ref|ZP_06750408.1| DNA primase [Fusobacterium sp. 3_1_27] gi|27886662|gb|EAA23827.1| DNA primase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|294486834|gb|EFG34196.1| DNA primase [Fusobacterium sp. 3_1_27] Length = 603 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 153/632 (24%), Positives = 274/632 (43%), Gaps = 41/632 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYYKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYNNTNA--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K ++ KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDDTVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ GK AF K++ SL + D L+ + N + K+ ++++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSNEYDLNNNIIAKQNFIERFKDFFSNVESD 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + + ++ ++ K K Sbjct: 399 LEKEMYLKKLSEKIDINVGILRKILVEQNKKFSIKKDYFNENQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ LI P +E + N + + + + EI Sbjct: 451 QANSLEMAIVKMLIRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFLDSSIIMREIK 510 Query: 539 QRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-LL 591 + E L ++ N + ++ L L + + + Sbjct: 511 NYIKESNNFSQYEKDNELARIIMDYVLIPNKIEEERENTELFKSYLREKLKLRDKTKDDI 570 Query: 592 SRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 +++ E +++K+IA+ + E K L Sbjct: 571 AKKIEFGKLKKEIAKTKSVEEFIKVYNSFKYL 602 >gi|212550798|ref|YP_002309115.1| DNA primase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549036|dbj|BAG83704.1| DNA primase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 670 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 160/686 (23%), Positives = 279/686 (40%), Gaps = 70/686 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ + I ++ +V +R N Y CPFH++ TPS + + +K Y Sbjct: 2 IDSITIERIQSASQIYEVVSDFVTLKKRGVN-----YVGICPFHEDNTPSLYVSPAKNLY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 CF+C G + F+ S+ E++Q LA G+ + + ++ + I+ + L Sbjct: 57 KCFACGEGGTAIHFVMKYEQLSYPEALQYLAKKYGIEFREIKMSNEQKQIQNIREAMFIL 116 Query: 121 IEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 A F +L + ++ + Y +R I+ F+LGYA R S + + G+ Sbjct: 117 NSFAQKTFSTNLFDTKEGQSVGLSYFRKRNFRKDIIQKFQLGYADSQRDSFTQTAIRAGY 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 +E + + GL I N + DRFR R+IFPI + G+++AFGGR L K E V KY+NS Sbjct: 177 KQEYLKKTGLSIIEKNY--TIDRFRERVIFPIHTLSGKIVAFGGRILKKEEKVAKYVNSL 234 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ ++HK LY + A + K LVEGY DV+S+ QAG++NVV+S Sbjct: 235 ESEIYHKSNELYGIYFARQAIVKY----------DQCYLVEGYTDVISMHQAGIENVVAS 284 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTALT+ Q+RL+ + + I + +D D G++AA ++I+L L G + VLL GE Sbjct: 285 AGTALTQGQIRLIRRFTKNITVLYDRDTAGIKAALRSINL---LLETGLNIKTVLLPEGE 341 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + T+F I ++ + N P ++ ++ I I + Sbjct: 342 DPDSFSQKQSATSFNNYIKKNETDFVRFKVELLMQDAGNDPIKKVQILTETVYTIALIPE 401 Query: 418 QKLRYYYSQAIRDRLQQLFQKY-------ITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + R Y + L + E + K + ++ + + S Sbjct: 402 EITRLIYVKECSYLLDIDERLLMHNVEKKREELFLQKKKNDKLQLQKTEQQNTINNLPSL 461 Query: 471 LVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQE---------LADIRYDNNELQK-- 517 LS E ++ ++ + E E L I + ++L++ Sbjct: 462 EHNLNLSFPFYEYETNIMYYVVRYGEQYFYYEYEDEGTNELISANLNVIEFIVSDLEEDE 521 Query: 518 ------LWSFLF---------------SDFVEQKYFLPEEIHQRLCERGFGE--LLKQLD 554 L+ + + + + E + Q Sbjct: 522 IELHYPLYRKMLKEGYEWCKKNNFIAEEYYKNHSDIKISHFAVDISTDKYIESKVFSQYK 581 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + T ++ I + + L + +L + E I KQI +K Sbjct: 582 ETKVNEEKLKTTKQSQINKMLLKEIPYVMLNYKNAILKHRVETINKQIKLAEKGNNFDKQ 641 Query: 615 AILISILHEV--HIQIHQIESQEAMI 638 LIS L + ++ + +E +I Sbjct: 642 KELISQLSGLLKTKKVIALRLRERII 667 >gi|146329001|ref|YP_001209966.1| DNA primase [Dichelobacter nodosus VCS1703A] gi|146232471|gb|ABQ13449.1| DNA primase [Dichelobacter nodosus VCS1703A] Length = 551 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 168/590 (28%), Positives = 248/590 (42%), Gaps = 50/590 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDW-DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ FI DL+ I +LIG + + + N Y ACCPFH EKTPSF ++ K Sbjct: 4 RIPKSFIDDLINRTNIVSLIGSRLSYAKKMGAN-----YVACCPFHQEKTPSFTVSEVKQ 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI-EKKEKIQTDL-I 118 FYYCF C GD L FL SF+E+V+ LA G+ +P + + +EK + +L + Sbjct: 59 FYYCFGCQAGGDALRFLMDYEHLSFVEAVESLAHFHGLTIPYEETESYNPEEKSRIELGL 118 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FF YL RGI H ++ F LGYAP L + Sbjct: 119 LCLADAAQFFQRCFYTEEAVSAREYLRARGIKKHLVDDFLLGYAPAGNQLLAFLRDKYEL 178 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + G+ YD FR RL+FPIR+ RGQ+IAFG RT+ E KYLNS E Sbjct: 179 PLLQAVGL----IGEKDGRYYDWFRQRLMFPIRNIRGQIIAFGARTI-ANEQPKYLNSAE 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + F+K LY F A R+ + +I+ EGY+DV+ + Q G+ N V++L Sbjct: 234 SPWFNKRNELYGFDTA------------ARSKQTSLIVTEGYVDVIKMAQFGLDNAVATL 281 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA + L+ L K S ++ CFDGD G AA KA+ ++ H G FV L GED Sbjct: 282 GTAFGDTHLQQLKKRSKKVYFCFDGDAAGKHAAEKALHIIFTHYEEGYDWRFVFLPAGED 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PDSF+ +G AF +L+ S P R N Sbjct: 342 PDSFLTQHGSAAFLQLLDASEPP------SLFLQRLLNIDQRATWTAEEYAAV------- 388 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + L L Q + + + N S++ ++ G L+ Sbjct: 389 ------VEKAAQWLGLLPQGHYRQMMQKQLQKQLNTSVAIIDS-SEKSIEYHAAGGSLAA 441 Query: 479 KPSLREAALLLTLINHPAILQEQY--QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 P+ EA + L+ P+ + Q + + + +L +L ++ E Sbjct: 442 APTKLEARMAAVLLQQPSWYLKIDMNQYASLLAKEVPFFYRLL-YLLRCGADKAVLEAEI 500 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 L +QL + + L +RQ ++ L K Sbjct: 501 RAMHLEVDLMRS--RQLFSLLDEKLLTVEFEGMMQELLRQHLKKQARLEK 548 >gi|317179806|dbj|BAJ57592.1| DNA primase [Helicobacter pylori F32] Length = 559 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 148/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YSIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSHPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|261838883|gb|ACX98648.1| DNA primase [Helicobacter pylori 52] Length = 508 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 138/540 (25%), Positives = 230/540 (42%), Gaps = 39/540 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L + +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSNKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIATLLQAPLHVLGIRERASFQPFYPKTEKPNHVQK--------LVNAPSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 >gi|297379234|gb|ADI34121.1| DNA primase [Helicobacter pylori v225d] Length = 559 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 145/567 (25%), Positives = 240/567 (42%), Gaps = 41/567 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERVSFQPF--------YPKTEKPNHAQKLVNAPSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540 E ++ L+ ++L + + + + + + L + ++ + + Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATT 567 L + GF + L+ L + L Sbjct: 503 LKKGGFEKELRLLILHYFERQLKEIPK 529 >gi|119716179|ref|YP_923144.1| DNA primase [Nocardioides sp. JS614] gi|119536840|gb|ABL81457.1| DNA primase [Nocardioides sp. JS614] Length = 932 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 128/586 (21%), Positives = 229/586 (39%), Gaps = 44/586 (7%) Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---QTDLIRL 120 CF C G+ ++FL + G +F E+V+RLA GV L + + ++ + L+ Sbjct: 374 CFGCSEGGNVITFLMKIDGLTFGEAVERLADKVGVQLRREEGDVREERPKGPPRRRLVEA 433 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +VA +++ L +L RG D A E F +G+AP +L+ HLRQKGFS Sbjct: 434 HKVAQEYYADQLATPDALVARQFLGGRGFDQAAAEHFGIGFAPRDGDALKTHLRQKGFSA 493 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 E++ GL+ + YDRFR RL++PIR + G I FG R + + + KYLN+ E Sbjct: 494 EEMTVGGLI-----GPSGYDRFRGRLLWPIRDASGDTIGFGARRIFDDDRIDAKYLNTSE 548 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K + LY A + + SS ++VEGY DV++ +GV V++ Sbjct: 549 TPIYKKSQVLYGIDLARRDIGR----------SSQAVIVEGYTDVMACHLSGVTTAVATC 598 Query: 299 GTALTEYQLRLLWKL-------SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 GTA + R+L + I+ FDGD G +AA +A + ++ Sbjct: 599 GTAFGDDHSRVLRRFLNDHQVTHGEIIFTFDGDAAGQKAALRAFGGDQNFV---SQTYVA 655 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G DP G A +L+ +PL + + D R Sbjct: 656 VEPGGLDPCDLRIQQGDAAVRELVARRVPLYRFVLTNVVREFDLDRADGRIAAVREAAKL 715 Query: 412 INHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + +D + + +++ I + + + E + R + P+ R S Sbjct: 716 VLSSRDNSVAQSSFARDISELTGVDPNEVLVEVRRVVARHRNGDRGAVAEPPTNRSAVPS 775 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 L E L +I HP + ++ + + + +W + + Sbjct: 776 L-----HDPRFAIERETLQLVIQHPMTIGRSTGDIGPNDFVHPTYRAVWELVAAAGGPGA 830 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 RL + + + + E + V + + L L Sbjct: 831 GAGDPSWANRLRDAATDPAASSV---ISALAVEPLKKEPDAAYVAEHVFRLLEL-----T 882 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +R+ I+ ++ + AE+ + L + + + A Sbjct: 883 AARRIAAIKSKLQRTNPVEHAEEFNKMFGELAALEAHRRALRDRLA 928 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I ++ I +++ QYV G CPFHDEK+PSF+ N S+GF Sbjct: 4 RIRDEDIAEVREKARIDDVVSQYVTLRPAG----GGSLKGLCPFHDEKSPSFNVNPSRGF 59 Query: 62 YYC 64 ++C Sbjct: 60 FHC 62 >gi|218295155|ref|ZP_03495991.1| DNA primase [Thermus aquaticus Y51MC23] gi|218244358|gb|EED10883.1| DNA primase [Thermus aquaticus Y51MC23] Length = 577 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 149/627 (23%), Positives = 263/627 (41%), Gaps = 64/627 (10%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + + + ++ +YV G + CPFH EKTPSF+ ++ KG ++CF Sbjct: 5 QVVEAIKRRLSLKEVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFHCF 60 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C GD ++F+ + G F +++RLA AGV LP + + +L ++++A Sbjct: 61 GCKAGGDLIAFVERIEGLDFQTALERLAEEAGVELPRRLGG-----ERRKELYEVLKLAQ 115 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F L+ YL+ RG+ ++ F LGYAP L +L + G S E+ ++ Sbjct: 116 AYFQEGLRAH--PEAMAYLEGRGLSGESVGRFGLGYAPPKGDGLLTYLSRHGVSPEEGLK 173 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 AG+L + YDRFRNR+ FPI+ G+++AF GR L E+ KYLNSPET LF K Sbjct: 174 AGVL--AEKEGRYYDRFRNRITFPIKDHLGRIVAFTGRAL-GDEAPKYLNSPETPLFRKR 230 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 + L+ F A L+ I+VEG D ++L Q G V+ LG+ L+E Sbjct: 231 EVLFAFPEAKARLR-----------EGRAIVVEGLFDAIALHQLGFSETVAVLGSGLSEE 279 Query: 306 QLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FI 363 Q RLL R + L FD D+ G +A +++DL + + + + +DP + Sbjct: 280 QARLLKTQEVREVYLAFDADEAGQKATLQSLDLEMAR----KFLFYAVRLPVKDPGELLL 335 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G+ F+K + E+LP V+ ++ + + P+ + ++ L + L Sbjct: 336 HPEGRALFQKALEEALPEVEFRFQEAAKGLDLSRPEHKRKVLEALTPRM-------LSPE 388 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + +RL+ L G K+ A + + + L K + + L Sbjct: 389 PFDPVAERLKALV------VERLGLSPKELADYLQARKRGRPLPPPPPPKAEPRNRTLLL 442 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++ L++ P + A E L + ++ Sbjct: 443 ELDVMALLLSLPEESFLNWVLYAADHVWPPE-GSLLAEFLELARKEPRKD---------- 491 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 +L + + E + + + +ALA + L R+ A Sbjct: 492 -YLRSVLSRKEAGGILLERLMLAPEVDPSRLPEVMDKALARLREAYYLERR--------A 542 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ + L+ + E+ I Sbjct: 543 KLKEVFLQNPSQELLREIQELDQAIEA 569 >gi|254778748|ref|YP_003056853.1| DNA primase [Helicobacter pylori B38] gi|254000659|emb|CAX28568.1| DNA primase [Helicobacter pylori B38] Length = 559 Score = 281 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 148/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNKID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA L R +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKA---SLMLAKDQRRGGVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSHPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIATLLQAPLHVLGVRERASFQPFYPQT--------EKPNRAQRFAHVSNALSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557 >gi|149923523|ref|ZP_01911924.1| DNA primase [Plesiocystis pacifica SIR-1] gi|149815592|gb|EDM75123.1| DNA primase [Plesiocystis pacifica SIR-1] Length = 798 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 140/460 (30%), Positives = 216/460 (46%), Gaps = 38/460 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I+ + I +IG +V R N + CPFHDEK+PSF+ + + Sbjct: 3 AIPDHIIEQIREETDIVEVIGSHVGLKRSGKN-----FKGLCPFHDEKSPSFYVDPVRKS 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EKKEKIQTDL 117 + CF C V GD SF+ + G F+ +VQ L A GV +P E +E+ + Sbjct: 58 FKCFGCGVWGDAFSFVQKIEGVGFLSAVQTLGARVGVAMPNQSKGDVRRAEVREREREQA 117 Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAP----DSRYSLREH 172 R+ A + + L + + Y ERGID E F++GYAP +L Sbjct: 118 YRVNAAAAEVYRTILLSEADGEAGRVYQRERGIDEETSEAFRVGYAPAPEEAGWDTLVRA 177 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK----- 227 L+++ S + GL+ + + YDRFR RL+FPI G+V+ F GR L + Sbjct: 178 LQKRDLSLDVAKNLGLIAASNRGGSYYDRFRGRLMFPIIQPGGRVLGFSGRVLPRFAETE 237 Query: 228 --GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 ++ KY+NSPE++L+ K K L+ A + ++K+ R ILVEG +DV+S Sbjct: 238 SGDKAPKYVNSPESVLYKKSKTLFGLHSAGSVMRKAERG----------ILVEGQIDVVS 287 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 + Q G + V+ LGTALT++Q LL + + +I+LCFDGD G +AAY A+ L L G Sbjct: 288 MHQRGYRETVAPLGTALTKHQCELLARFTNQIILCFDGDRAGAKAAYAAMPL---LLEVG 344 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 V L GEDPDS + L+ ++ L +R + + D +A Sbjct: 345 MDVRVAALPEGEDPDSI----DPEHLDNLLRAPGSGLEWLMRRMVAKGARQSIDAKARAL 400 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 L + +K + R Y + L ++ + G Sbjct: 401 RALVPLLRCVKGRDARGDYCNLAAEMLDLPPRRVWSAVGG 440 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 57/198 (28%), Gaps = 13/198 (6%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAALLLTLIN 493 R + R + PS + + +A++ L++ Sbjct: 606 PADAQTMPQSPRRASPSPRAGSKPPPSPSQFSGGVPHSAAMRSVLPLPSGQASVTALLVD 665 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 P + + + + LQ + + + ++ + E L + +L Sbjct: 666 RPELARNAERNGVLDHVTDQRLQPILARVIQAALDGETMPSEGELLDLVDPSQHRML--- 722 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 D + + L + +R R L + +E QIA+ A G + Sbjct: 723 ------HDHLFGHEFLEDEDPQARLDEGLQICRRDR-LEGELHSLEHQIAEARATGRLDV 775 Query: 614 TAILISILHEVHIQIHQI 631 L+ + ++ Sbjct: 776 VRELMVKRMATRSALAEL 793 >gi|162447799|ref|YP_001620931.1| DNA primase [Acholeplasma laidlawii PG-8A] gi|161985906|gb|ABX81555.1| DNA primase [Acholeplasma laidlawii PG-8A] Length = 575 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 143/626 (22%), Positives = 268/626 (42%), Gaps = 56/626 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I L+ +YVD +R N Y CPFHDEKTPSF K +C Sbjct: 3 DNIYQKINEQTDIVALVSKYVDLTKRGKN-----YMGLCPFHDEKTPSFSVTPEKNIAFC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C G ++FL+ + S ++ + LA G+ + + + L ++ A Sbjct: 58 FGCKKGGAPITFLAQIKNISNADAAKELAQELGIEF----GQTKVQNNPFKHLHDVMNDA 113 Query: 125 TDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 F+ +LKN+ K + YL R + I F++GYAPD SL + LR K S + Sbjct: 114 ASFYQFALKNSESGKLAYDYLTNRQLSDELIHHFEVGYAPDQIDSLYKMLRSKNHSVSDM 173 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + GL + + YD FRNR+ FPI+ GQ+IAF GRTL+K E KY+NS ET +F Sbjct: 174 MSLGL-VKQNEEGHYYDVFRNRITFPIKDEHGQIIAFSGRTLNKNEKAKYINSTETPIFK 232 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 KG LY++F ++ + K +IL EG+ DV + +AG + V+++GTA+T Sbjct: 233 KGLTLYHYFESIRPVVKQ----------KHVILHEGFFDVFASYKAGFEASVATMGTAIT 282 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 Q +L+ +++ +V+ +DGD+PG++A AI + G ++ + L DPD F+ Sbjct: 283 SDQAKLIRRITDHVVIAYDGDNPGIQATLHAIPI---LKRQGLSISILNLPNKMDPDDFV 339 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 +G ++ L + L V + +++ F D+ + + +K + D + Sbjct: 340 LKHGVDKYQALFNKLLDPVQFGYIYYQKDKDFKKSDDITKFKQEMKQLLVG-SDPTIIDL 398 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + D L + + S ++ + K+ + Sbjct: 399 YERRSFDELGI--------------------QLLINEHSSSLPVKQKPIDRKVISRAERS 438 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 +++ L+ L + + + + ++L+ L + + + ++ + Sbjct: 439 IDIIIMDLLKQRKYLDKIRHSILLTDITDPKKRELYKDLMNYYEIN---SDDALNLEAFK 495 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 G+ + ++ ++ + N + K+ EI+ I Sbjct: 496 MGYTKEIELVETYCKSTDYCKNLLIQNDKTLNDILVHFQNYKKQL--------EIQSLIK 547 Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629 + + + + + + E+ Q+ Sbjct: 548 KTESITDHLEMNRTLKAIDELRKQVK 573 >gi|308182198|ref|YP_003926325.1| DNA primase [Helicobacter pylori PeCan4] gi|308064383|gb|ADO06275.1| DNA primase [Helicobacter pylori PeCan4] Length = 559 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 148/595 (24%), Positives = 254/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + V + Sbjct: 393 EYKPLIATLLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFVHVSNTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|307636696|gb|ADN79146.1| DNA primase [Helicobacter pylori 908] gi|325995282|gb|ADZ50687.1| DNA primase [Helicobacter pylori 2018] gi|325996883|gb|ADZ49091.1| DNA primase [Helicobacter pylori 2017] Length = 559 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKLGSN-----YMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNITLEY----DKSAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G +AAYKA ++ G VL DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVVLFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYVLDDPLEKDKALKEMLGFLKNF-SLLLQN 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + Sbjct: 393 EYKPLIATLLQAPLHVLGIREPVSFQPF--------YPKTEKPNHSQKFAHVSSMPSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557 >gi|118474432|ref|YP_892863.1| DNA primase [Campylobacter fetus subsp. fetus 82-40] gi|118413658|gb|ABK82078.1| DNA primase [Campylobacter fetus subsp. fetus 82-40] Length = 546 Score = 281 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 140/627 (22%), Positives = 256/627 (40%), Gaps = 85/627 (13%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++L + I++++G Y+ R + D+ CPFH++K PS + SKG ++CF Sbjct: 5 SSIENLKNIVDIADVVGSYLPLKRSGS-----DFVCVCPFHNDKNPSMRVSPSKGIFHCF 59 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 SC GD + F+ S+ E++++LA + L D K E + ++E Sbjct: 60 SCKAGGDSIKFIMDYEKLSYPEAIEKLANMYNFTLNYTDNKNEHHYDKK-----ILENLN 114 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 ++ L + YL RGI+ IE ++LG+A S + L + ++ + Sbjct: 115 LYYKSMLYKN--REAINYLYSRGINDAMIEKWELGWAGAS-QATINLLENEEIEPKEALY 171 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 G + N Y F NR+ FPI + G+++ FGGRT+ KY+NSP++ +F K Sbjct: 172 VGAVKQ--NETGLYASFINRITFPIYNHLGKLVGFGGRTI-SNNPAKYVNSPQSAIFDKS 228 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 K LY + A N + K II+ EGYMD + L AG+ N V+ LGTALTE Sbjct: 229 KLLYGYDKAKNQIFKK----------GEIIICEGYMDCIMLHLAGISNAVAVLGTALTEK 278 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 + LL + +++L FD D+ G+ AA+K+ L+ G VL+S G+DP + Sbjct: 279 HIPLLKRSDIKVILSFDNDEAGVNAAFKSAKLLASSECDG---RVVLISGGKDPAELVAS 335 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + + L + + ++ + TP E A+ ++ +K + + Y Sbjct: 336 GRANELRNSLEGGVELGEFYIRHLIKSSNPKTPLEVAKTLESVQEFTKGLK-EIVANSYV 394 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + L L + RY K ++ K + L E Sbjct: 395 PLVSSLLS-LAPNSFSLCGNGFRYSPKKQMAKETKSAKK----------------DLLEL 437 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 +L ++ + L+ + + +++ + + + Sbjct: 438 EILKNMLLNKDYLEVVKSDCGSDMFVT--HNEIYKAV-----------------TISQNP 478 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 +++L ++ D + Y L K +L + +K I + Sbjct: 479 NNPHIREL----------------SLNDNFELYDSLDRLKKALNIL--KINFCDKTIVLL 520 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIE 632 + + K + + L + Q+ I+ Sbjct: 521 ASSNDKSKFEKI-AQLQNIKKQLKGIQ 546 >gi|308061315|gb|ADO03203.1| DNA primase [Helicobacter pylori Cuz20] Length = 559 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERVSFQPF--------YPKTEKPNHAQKLVNAPSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|217031755|ref|ZP_03437259.1| hypothetical protein HPB128_155g68 [Helicobacter pylori B128] gi|216946602|gb|EEC25202.1| hypothetical protein HPB128_155g68 [Helicobacter pylori B128] Length = 514 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 137/540 (25%), Positives = 232/540 (42%), Gaps = 39/540 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+D + L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMASSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + + Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 >gi|15611081|ref|NP_222732.1| DNA primase [Helicobacter pylori J99] gi|9789776|sp|Q9ZN49|PRIM_HELPJ RecName: Full=DNA primase gi|4154512|gb|AAD05592.1| DNA PRIMASE [Helicobacter pylori J99] Length = 559 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 251/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 YCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNKID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQN 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + ++ Sbjct: 393 EYKPLIATLLQAPLHVLGIREPVSFQPFYPKTEKPNRPQK--------FAHVSSMPSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKRARQAIMKLKQGELV 557 >gi|254302831|ref|ZP_04970189.1| DNA primase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323023|gb|EDK88273.1| DNA primase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 603 Score = 280 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 153/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ ++++ L+ + + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTDAIRELSKKYRINIKEYNNAN--VNENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+S+ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALQYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNSKGYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGR+L K +S KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRSLEKDDSIPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KG+N Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGRNAYGIERAINIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGIAATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ GK AF K++ SL + D L+ + N + K +++++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLDNNIIAKQNFIERFKEFFSNVEND 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + D ++ K K Sbjct: 399 LEKEMYLKKLSEKIDISVDVLRKTLVEQNKKHAIRKDYVDINQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ L+ P +E + N + + + + +E Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANKIFKFFNQKIKENLFFDSNTIMKEFK 510 Query: 539 QRLCE-RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----L 590 + E F + +L R + D L E ++ ++ L + + R Sbjct: 511 NYIEESNEFSDYEKNNELARIIMDYILIPNKFEEERENI-ALFKSYLRVKLKLRDKTKDD 569 Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 +S++ E +++K+I + + + K L Sbjct: 570 ISKKIEFGKLKKEIEETKSVEDFIKVYNSFKYL 602 >gi|307298747|ref|ZP_07578550.1| DNA primase [Thermotogales bacterium mesG1.Ag.4.2] gi|306915912|gb|EFN46296.1| DNA primase [Thermotogales bacterium mesG1.Ag.4.2] Length = 569 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 142/628 (22%), Positives = 254/628 (40%), Gaps = 66/628 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ + ++ I I + IG+YV+ + + Y CPFH++ PSF+ + +GF+ Sbjct: 2 FTKEELDEIKKSINIVDFIGRYVNLQKAGS-----SYRGLCPFHNDNDPSFYVHPQRGFF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C KGD +SF + SF E+V+RLA AG+P+ V E ++ Sbjct: 57 HCFGCGEKGDVISFYQKIENLSFAEAVKRLADYAGIPIQVDT-----AESEYDKFTTIMS 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++ LK R + L Y L++R I + I+ F+LGY+PD R + + + Sbjct: 112 RLAGIYNRELKEKRPETLAYLLEKRKISQNTIDEFQLGYSPDERTFPQSLPSKLRTD--E 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 L I AT DRF RL+ PI + G+V+ FGGR + + KY+NS E+ F Sbjct: 170 KTLLQLGILVRRGATYSDRFAGRLMIPIDNESGKVVGFGGRIMDAEKGPKYINSSESKYF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + L+N A +++ ++ ++ EGY DV+SL +AG+ N V LGTAL Sbjct: 230 QKNRLLFNLSRARAAIKQL----------NYAVIAEGYFDVISLFEAGITNSVGLLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE LR+L + ++ D D+ G A+ ++ID+ V +DP Sbjct: 280 TERHLRILGNYTRNLLFFLDSDEAGQTASLRSIDIAE---KLDFGTAVVFSRDQKDPADL 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 G A ++ + ++P + + + P R L HLK + + Sbjct: 337 FVAEGPKAIKETLALAIPGPAFRVEFFSRKLDLSIPLGRKHLIEHLKPYVISFRS----- 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 S +K + + R S G++ +L Sbjct: 392 -------------TGNLAAVQSTIAALAQKTGYSERELESALRGGMSKSSGGEMKSGLAL 438 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + + + HP + +++ + + +E+ + + Sbjct: 439 KLKDHIRIYLQHPKLRATVVKQIELM--------------------NESRDLKELLKGMK 478 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E L L + L + D Q Q+ LY RL+ + EI++++ Sbjct: 479 KGLELEELLDLVEESIGRELIELASTCIDFDTAQRVLQSTGLYANKRLVEEEMAEIDRRL 538 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630 + L+ E+ + + Sbjct: 539 ---PKVKDEGARKALLIRRIELRRMLER 563 >gi|109948169|ref|YP_665397.1| DNA primase [Helicobacter acinonychis str. Sheeba] gi|109715390|emb|CAK00398.1| DNA primase DnaG [Helicobacter acinonychis str. Sheeba] Length = 559 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 145/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + LL I +I YVD + +N Y ACCPFHDE++ SF N +KGFY Sbjct: 2 ILKSSVDRLLQVADIVEVISSYVDLRKTGSN-----YMACCPFHDERSASFSVNQAKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIQFVMEFEKLSFVEALEKLAHRFNVTLEY----DKGVYYDYKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG++ +I FKLG + + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLDYLQKRGLNIESIRAFKLGLCVNR---IYHGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L DN+ +Y RF +R++FPI + QV+ FGGRTL K + KY+NSP++ LF Sbjct: 168 LIELGVLGKNDNNQKTYLRFLDRIMFPIYNPSAQVVGFGGRTL-KEKGAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A + K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKESIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEIFLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANNQIETLKNWLSHPIAFIEFVLRHMASSYVLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + V + Sbjct: 393 EYKPLIATLLQVPSHVLGIKERSSFQPFYSKTEKSNYSQK--------FVHVSNTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIALKKVRQAIIKLKQGELV 557 >gi|87198665|ref|YP_495922.1| DNA primase [Novosphingobium aromaticivorans DSM 12444] gi|87134346|gb|ABD25088.1| plasmid and phage DNA primase [Novosphingobium aromaticivorans DSM 12444] Length = 572 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 136/448 (30%), Positives = 219/448 (48%), Gaps = 27/448 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P F+ +L +S LI Q + D+ ++ ACCPFH EKTPSF ND+KG Sbjct: 1 MAIPHQFLDELRSRTTLSALIAQTLKIDKAGR-----EFKACCPFHGEKTPSFTINDAKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FY+CF C GD + ++ G FI++V LA+ AG+ +P P+ ++ + Sbjct: 56 FYHCFGCGAHGDAIRWMIDQRGLQFIDAVSELASAAGMKVPAPTPQERERSAKIETVREA 115 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +++A F L+ + YL+ RG+ +E+F +GYA SLR + + Sbjct: 116 LDIAQGIFVGQLRE--AGAVMQYLERRGMTPMDLEIFGIGYARGMDGSLRGSGIGRQIGQ 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS--KGESVKYLNSPE 238 + + + + F +R+ PI +RG+++ FGGR + ++ K++NSP+ Sbjct: 174 AAGLLSQ-----REDGSLREMFHDRVTVPIHDARGRLVGFGGRVWPGRRRDTPKFVNSPD 228 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +F KG+ L+N R + + +I+VEGY DV+S+ +AG V+ + Sbjct: 229 SPIFDKGRTLFNLH--------RAAPAARPGAENRLIVVEGYFDVVSMARAGFAACVAPM 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE QL W+L R VL FDGD G +AA +A + + PG + LL G+D Sbjct: 281 GTALTEEQLVRCWRLHHRPVLLFDGDSAGQKAAVRACRTAIPGIGPGRELAIALLPDGKD 340 Query: 359 PDSFIRCY----GKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCIN 413 PD + G+ A E ++ E+LPL L+ E + TP++ A + L Sbjct: 341 PDELLYMDATGMGRRAIEAIVTEALPLHTFLFDAIVAEAGANPTPEQTAAVWAELAALAG 400 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYIT 441 I D++ R Y R R ++ Sbjct: 401 EIADEETRCQYLGTWRARFEREISALPQ 428 >gi|317176818|dbj|BAJ54607.1| DNA primase [Helicobacter pylori F16] Length = 559 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 145/553 (26%), Positives = 238/553 (43%), Gaps = 41/553 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + +N Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGSN-----YMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSTQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A Y+ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEYIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASSALSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540 E ++ L+ ++L + + + + + + L + ++ + + Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 541 LCERGFGELLKQL 553 L + GF + L+ L Sbjct: 503 LKKGGFEKELRLL 515 >gi|298737104|ref|YP_003729634.1| DNA primase [Helicobacter pylori B8] gi|298356298|emb|CBI67170.1| DNA primase [Helicobacter pylori B8] Length = 559 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 144/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+D + L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMASSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + + Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + ++ + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEISKSPLSFSEKMNALKKARQAIMKLKQGELV 557 >gi|15644201|ref|NP_229251.1| DNA primase [Thermotoga maritima MSB8] gi|9910840|sp|Q9X1G3|PRIM_THEMA RecName: Full=DNA primase gi|4982016|gb|AAD36520.1|AE001796_12 DNA primase [Thermotoga maritima MSB8] Length = 565 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 137/628 (21%), Positives = 241/628 (38%), Gaps = 65/628 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I+++ + I +I +YV+ R + Y A CPFH E PSF+ + Y Sbjct: 2 IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + G SF E+++RLA AG+ L + + + L E Sbjct: 57 HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYIRLY---E 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + K YL RG I F GY P E G + Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAE--GMNITL 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I DRF R++ PI++ G ++AFGGR L E KYLNSPET F Sbjct: 170 EELVRYGIALKKGDRFVDRFEGRIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ F A + F ++ EGY D L+ + G+ V+ LG +L Sbjct: 229 SKKKTLFLFDEAKKVAK----------EVGFFVITEGYFDALAFRKDGIPTAVAVLGASL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + L S ++LCFD D G RA K+++ L V S +DPD Sbjct: 279 SREAILKLSAYSKNVILCFDNDKAGFRATLKSLE---DLLDYEFNVLVATPSPYKDPDEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G+ + +K++ S L N+P LK + ++ R Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDRNSPAGVRSYLSFLKGWVQKMR----RK 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + I + + ++ + +++ + + ++ +G Sbjct: 392 GYLKHIENLVNEVSSSLQIPENQILNFFESDRSNTMPVHETKSSKVYDEGRG-------- 443 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L +N+ + ++ + L ++ ++ + + E + E + L Sbjct: 444 ----LAYLFLNYEDLREKILE-LDLEVLEDKNAREFFKRV--SLGEDLNKVIENFPKELK 496 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + F + + + L+ + R + R+ EI+ I Sbjct: 497 DWIFETI-----------------ESIPPPKDPEKFLGDLSEKLKIRRIERRIAEIDDMI 539 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + E+ +L+S+ ++ +I + Sbjct: 540 KKAS---NDEERRLLLSMKVDLLRKIKR 564 >gi|15644645|ref|NP_206814.1| DNA primase [Helicobacter pylori 26695] gi|2494141|sp|P56064|PRIM_HELPY RecName: Full=DNA primase gi|2313086|gb|AAD07082.1| DNA primase (dnaG) [Helicobacter pylori 26695] Length = 559 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 145/595 (24%), Positives = 253/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YV+ + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVNLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L DN +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIATLLQAPLHVLGIRERVSFQPF--------YPKTEKPNRPQRFAHVSSAPSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557 >gi|299771333|ref|YP_003733359.1| DNA primase [Acinetobacter sp. DR1] gi|298701421|gb|ADI91986.1| DNA primase [Acinetobacter sp. DR1] Length = 624 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 158/680 (23%), Positives = 267/680 (39%), Gaps = 114/680 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EKTPSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----------- 109 +Y+CF C G+ + FL + +FI+ ++ L++ AGV LP + + +K Sbjct: 56 YYHCFGCQANGNAIRFLMDIDNRNFIDVMKELSSSAGVELPKDNTENKKLSYTRQVTKPP 115 Query: 110 -------------KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156 ++ + +E FF + G +E Sbjct: 116 VAKANTAEPVTPTPQQPTDESYNTLEPV--FFDDPFAQFEQPFSFDEPVQEGNLYDLLEN 173 Query: 157 FKLGYAP--DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---------------- 198 Y + + + +Q+G + + I L ++ Sbjct: 174 VAQFYEHQLPNSQKAKNYFKQRGLTNQTIQFWRLGYAPEDWQHLEKAFPYDIDGLKQLGL 233 Query: 199 ---------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249 +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + LY Sbjct: 234 IRSSDSGRDFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLY 293 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 + SS ++VEGYMDV++L Q G+ V++LGTA L + Sbjct: 294 GLYEGRKL------------KSSDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLNI 341 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 342 LFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIRREGLE 401 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAI 428 F+KL+ ++ L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 402 NFQKLLQQAPLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLNQSF 461 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R++L K T + N + +D E + Sbjct: 462 REKLG--LGKRFTPQVSHDASLSFNIQTKD-------------------------EDFAV 494 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L++HP L ++ L + L K+ + L F E +E+ Sbjct: 495 AILMHHP-FLYIHFEGLRAYIPQDELLAKILATLNRIFDELP--DDQELATYYVLGACSS 551 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 ++ ++ + + +V Q AL + R L ++ + I Sbjct: 552 YCHEIADIMQRTNIQAL---TQAPEVADKLAQEYALGLKERYLRQKLKSPISLI------ 602 Query: 609 GEAEKTAILISILHEVHIQI 628 ++ L L+E+ QI Sbjct: 603 ----ESRNLRQQLNELTKQI 618 >gi|188526822|ref|YP_001909509.1| DNA primase [Helicobacter pylori Shi470] gi|188143062|gb|ACD47479.1| DNA primase [Helicobacter pylori Shi470] Length = 559 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 250/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YDIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD+ G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDNAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQVPLHVLGIRERASFQPFYPKTEKPNHTQK--------LVNASSTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|217034700|ref|ZP_03440103.1| hypothetical protein HP9810_880g11 [Helicobacter pylori 98-10] gi|216942840|gb|EEC22335.1| hypothetical protein HP9810_880g11 [Helicobacter pylori 98-10] Length = 559 Score = 279 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 143/595 (24%), Positives = 246/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLKKSGS-----SYMACCPFHEERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYCDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLRLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QA +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQADFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRSAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSHPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIATLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + ++ + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHK--RQEFDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|261837467|gb|ACX97233.1| DNA primase [Helicobacter pylori 51] Length = 559 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 145/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHKERSASFSVNQVKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRGG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + V + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKW--------VNASSALSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|295698767|ref|YP_003603422.1| DNA primase [Candidatus Riesia pediculicola USDA] gi|295698782|ref|YP_003603437.1| DNA primase [Candidatus Riesia pediculicola USDA] gi|291157169|gb|ADD79614.1| DNA primase [Candidatus Riesia pediculicola USDA] gi|291157339|gb|ADD79784.1| DNA primase [Candidatus Riesia pediculicola USDA] Length = 586 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 153/610 (25%), Positives = 266/610 (43%), Gaps = 45/610 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 +F+K+L+ I LI ++ + N Y A CPFH EKTPSF N K F Sbjct: 6 KISNEFVKELIEITDIVELIQNDINLQEKGKN-----YVALCPFHKEKTPSFTVNKEKRF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRL 120 YYCF C G+ + FL G F+E+++ L+ + G+ + K+E + + Sbjct: 61 YYCFGCSSHGNSIDFLMNYKGVGFVEAIKELSEMNGLEIVYEELNNFSKRENFKRIFYGI 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + F S K + YL RG+D + I+ F +G+ +++ + Q Sbjct: 121 LHEINKTFIDSWKYSFSYSAKRYLQRRGLDQNTIQHFSIGFGSIFDDKIKKKIIQMKNYS 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239 + E G+ I + ++F NR+ FPIR+ RG ++AFGGRT+ KY+NSPE+ Sbjct: 181 HHLKEIGI-IKINEKGRILNKFHNRITFPIRNRRGMIVAFGGRTILNDHIQPKYINSPES 239 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F KGK LY + + +N S +++VEGYMDV+SL Q + V+ LG Sbjct: 240 VIFKKGKILYGMYEVIKE----------QNHPSKLLVVEGYMDVISLKQFQINYAVAILG 289 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+LTE ++ ++K + +V CFDGD G AA++ + +++ ++ + F+ L G DP Sbjct: 290 TSLTENHVKTIFKFTNSVVFCFDGDQAGYSAAWRTLKIIISYMEDDRQARFMFLPNGYDP 349 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D IR GK FEK I +S L L+ R + + + +A + I I Sbjct: 350 DKIIREEGKEKFEKRIEKSHLLSYFLFNRFKKKIDLSNNEGKARFSTLVSPIIYKIPGYV 409 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + + R K P + +Q K K Sbjct: 410 FKKCMFNELSHIIGVSI------------------QDRSIKKPLKSTIQKKSPKIKKLGN 451 Query: 480 PSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 S + L+ LI +P ++ ++ KL+ +F+ ++ Sbjct: 452 QSRTISILIKLLIKNPNFVRYFPNFNISKYENIKLFGIKLFLKIFNICRNYPEIDSNQLE 511 Query: 539 QRLCERGFGELLKQ--------LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +R LK+ L++++ A + V + + ++ ++ L Sbjct: 512 KRFNNDVLFRKLKEDSENHNFFLEKKIERRIFQDAMFHLTSIAVNERFNFLISKERKIGL 571 Query: 591 LSRQKEEIEK 600 ++KEE+ + Sbjct: 572 NIKEKEEVLR 581 >gi|226355338|ref|YP_002785078.1| DNA primase [Deinococcus deserti VCD115] gi|226317328|gb|ACO45324.1| putative DNA primase [Deinococcus deserti VCD115] Length = 572 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 159/620 (25%), Positives = 261/620 (42%), Gaps = 56/620 (9%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 IG++V G CPFH EK+PSF + +G+YYCF C GD SF+ Sbjct: 2 IGEHVRLTPAGK----GRLKGLCPFHKEKSPSFQVDTEQGYYYCFGCKAGGDIFSFVQRT 57 Query: 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140 SF +++++LA AG+ + + + EK DL + A ++F L Sbjct: 58 ENLSFGDAMRKLAEQAGIQV-----EAKYGEKSSRDLYDVNAFALEYFREHL----PGVA 108 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL RG+ I F+LGYAPD L + R KG SE +++EAGLLI+ S YD Sbjct: 109 LEYLRRRGLTDETIAAFELGYAPDGWDGLLKRARTKGLSERQLLEAGLLIENPESGRVYD 168 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 RFR R++FPIR G+++ +GGR L KYLN+PET F KG+ LY A +L+ Sbjct: 169 RFRGRVMFPIRDHLGRLVGYGGRVL-DDTKPKYLNTPETEAFRKGELLYGLDKARTHLK- 226 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVL 319 S +++VEGYMDV+++ Q G V+SLGTALT LL + ++ L Sbjct: 227 ---------GGSELVVVEGYMDVITMHQHGFTGAVASLGTALTAEHATLLERLGAQKLTL 277 Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 FD D+ GL+A +D VL RV + G+DP + + + L Sbjct: 278 MFDQDEAGLKATLSGLDQVLGAK---FRVRATSVPSGKDPADALLAGDIVGIRQALTSGL 334 Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 V + E +T + + + + L + ++ D ++++ + + Sbjct: 335 DEVHYRVQAAVEAHGLSTSEGKRRVLMQLLPRMQNL-DP------LDEGAEQMRTIACEQ 387 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + G + K ++L + L + RE ALL L+ P++ Sbjct: 388 L------GIKPEALMEWIASKAKRRQLTDTHLAGMSTHRTEEDRELALLRQLLVDPSL-- 439 Query: 500 EQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 LA + + + + + Q P+ I + +LL +L + R Sbjct: 440 -----LAKLDGSTPWRNESVRKVMLAA---QGAHSPDAILDVFRGQPEEQLLIRLMFEGR 491 Query: 559 DAGLWSATT----EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 DAG E N+ + + + + + ++KQ+ + Sbjct: 492 DAGTIGRANSQQYEQNVNAYAAAAVDDIQVSMSIDSMRAEVDLLKKQVMAAPPAEQLSML 551 Query: 615 AILISILHEVHIQIHQIESQ 634 + + + + S Sbjct: 552 KQIQELQRAIEAEKRARRSS 571 >gi|317181300|dbj|BAJ59084.1| DNA primase [Helicobacter pylori F57] Length = 559 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 144/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLKKSGS-----SYMACCPFHEERSASFSVNQMKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YSIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TLSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|317178319|dbj|BAJ56107.1| DNA primase [Helicobacter pylori F30] Length = 559 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKERRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPF--------YPKTEKPNHIQKLVNAPSALSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|208433987|ref|YP_002265653.1| DNA primase [Helicobacter pylori G27] gi|208431916|gb|ACI26787.1| DNA primase [Helicobacter pylori G27] Length = 559 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 145/595 (24%), Positives = 253/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPAEM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + + Sbjct: 393 EYKPLIASLLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFAHVPNTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMICLKKARQAIMKLKQGELV 557 >gi|308062881|gb|ADO04768.1| DNA primase [Helicobacter pylori Sat464] Length = 559 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 249/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGVYCDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDRTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + LV + Sbjct: 393 EYKPLIASLLQVPLHVLGIRERASFQPF--------YPKTEKPNHAQKLVNASDTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|291166411|gb|EFE28457.1| DNA primase [Filifactor alocis ATCC 35896] Length = 576 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 146/613 (23%), Positives = 258/613 (42%), Gaps = 58/613 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN+ FI+ + I +++ +YV G++ CPFH+EKTPSF N + Sbjct: 1 MNFDNSFIEKIKDENDIVDVVSEYVSLK-----GTHGNWMGLCPFHNEKTPSFSVNQNGQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDL 117 FY CF C GD +SF+ F+++V LA A +PLP + +K ++ + L Sbjct: 56 FYKCFGCQKSGDVISFIQEKERLEFVDAVIFLANRAMIPLPEKKEYSVEEKKVQEEKDIL 115 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 +R+ A FF L YL++R ++ I F LGYAP + + + Sbjct: 116 MRINLEAARFFRECLWKNL--FALEYLEKRDLNREIILHFGLGYAPFNNDLYEKLEKFYT 173 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + L D RF+NR++FPI + +G+VIAFGGR L+ KYLNSP Sbjct: 174 EDDLLKSGIFLKRDNGEIT---CRFKNRVMFPIFNPKGKVIAFGGRALNDSYPPKYLNSP 230 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ETI+F K NLY+ A + + +ILVEGYMD ++L + G N V+S Sbjct: 231 ETIIFFKKNNLYSLNFARKSIYQKD-----------VILVEGYMDTITLHRYGFSNTVAS 279 Query: 298 LGTALTEYQLRLLWKLS-PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 LGTA TE Q LL K + LC+D D+ G AA +A+D+ V+L Sbjct: 280 LGTAFTEQQAELLKKNKVKNVYLCYDSDNAGRLAAKRAMDI---LYKQELEGKVVILDAE 336 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH----LKNCI 412 +DPD +++ YG FE+ + +L ++D + + +++ + LK Sbjct: 337 KDPDDYLKKYGPQKFEQCLTNALNIIDFELYLLSNDVDLEKENDKLLFVKNAVSVLKKYE 396 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 I + + + ++ I + + + + + Sbjct: 397 EKIPNSFV---LIEQALKKISFSTGISIKSLGQE----MYGKYFSPNQFHNHSIEKEHVE 449 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLF------- 523 K ++ +E L+ ++ ++ + E + + + + + E + L+ L Sbjct: 450 KIEIDFHDYDKEKMLIDSIYHYG--IDEYITKFSIKESDFFSEENRSLFRQLLAQKKDCF 507 Query: 524 -SDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 F E+ + + + + L ++ R+ + ++ + Sbjct: 508 EDSFSRDGICKIEDMPTLIYSIRQDNIRRSIDILKKRQREL----MQSGQCKDELIRIGI 563 Query: 580 QALALYKRFRLLS 592 ++L K + + Sbjct: 564 DIISLQKELKNIK 576 >gi|315586001|gb|ADU40382.1| DNA primase [Helicobacter pylori 35A] Length = 559 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 144/595 (24%), Positives = 247/595 (41%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDHHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG ++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLDKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKNWLSRPMAFIEFVLRHMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIASLLQAPLHVLGIRERASFQPFYPKTEKPNHAQKWVNAPSTL--------SLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|317011868|gb|ADU82476.1| DNA primase [Helicobacter pylori Lithuania75] Length = 559 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMEFEKLSFVEALEKLAHRFNVALEY----DKGAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSIESIKAFKLGLCTNRID---YSIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N ++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNATATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPAEM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + + Sbjct: 393 EYKPLIAALLQAPLHVLGIRERASFQPF--------YPKTEKPNLAQKFAHVPNTMGLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S+ + + + +QA+ K+ L+ Sbjct: 503 LKEGGFEKELRLLILRYFERQLKEIPKSSLPFSEKMIFLKKARQAIMKLKQGELV 557 >gi|254797280|ref|YP_003082122.1| DNA primase [Neorickettsia risticii str. Illinois] gi|254590521|gb|ACT69883.1| DNA primase [Neorickettsia risticii str. Illinois] Length = 579 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 160/628 (25%), Positives = 279/628 (44%), Gaps = 56/628 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + +I+ + IP+S ++ + V R + CPFH EKTPSF ND F+YC Sbjct: 3 KKYIELIKERIPVSEVVSRTVKLKRVGS-----RLVGRCPFHQEKTPSFSVNDKGKFFYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD + F+S E+V+ LA+ G+ + + EK ++ + +E Sbjct: 58 FGCGKSGDVIDFISLTKRLDLNEAVEELASSIGIKIDKKNSGTEKFVQV----FQFLEEL 113 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 D+F ++L + + YY+ R D I FKLGY P + K F I Sbjct: 114 RDWFCNNLNSRVAQEASYYIRNRL-DDDVISEFKLGYCP--SNLTSFINKTKNFPSTVIK 170 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +G+L FR+RL+FPI + +G+VI FG R + +G KY+NS ET F K Sbjct: 171 SSGVLDKLGR-----CYFRDRLVFPINNVQGKVIGFGSRVIKEGILPKYINSCETDFFKK 225 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LYN + +NS IILVEGYMDV+SLCQ G ++V+ LGT++T Sbjct: 226 SEVLYNIDR------------IPKNSEEPIILVEGYMDVISLCQFGYKSVLGVLGTSITS 273 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN--FVLLSRGEDPDSF 362 + L++L +L ++ CFDGD+ G++AA + ++L++ I + F L G+DPD Sbjct: 274 HHLKVLNRLGRNLIFCFDGDNAGIKAAERVVELIMDEFINSLEIKTTFSFLPVGKDPDDL 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R AF++++ + L D ++ R ++P++ +LE L+ + ++KD K+R Sbjct: 334 VRSDRA-AFQRVLDGARSLSDTIFFLAKYGRQCSSPEDFIDLEKILEKYLTNVKDYKIRK 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 ++ + R+ L + + ++A + + K Sbjct: 393 HFQDFFQQRIFLLKRSLRPRNFISTYKGSEDAMRFVDARKLSSSASTHVDKKV------- 445 Query: 483 REAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL +I P +LQ ++ + + ++ + KL SF+ + + Sbjct: 446 ---LLLKIVIKFPEVLQNGDREEYFSLLKLSDPRHVKLQSFIVQLLNTSNDISSTSLERA 502 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L L A + A++ D + ++ L +EE + Sbjct: 503 L-----------LANTETAASYKLLSDLASLPDNIEKATFLWDKLQKQLWLDELREEYRR 551 Query: 601 QIAQVT-AKGEAEKTAILISILHEVHIQ 627 I +G+ E+ ++ + E + Sbjct: 552 MIHTSDLDEGKMEEAQRILVKIREAEKE 579 >gi|296327932|ref|ZP_06870467.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154888|gb|EFG95670.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 603 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 155/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYRGLCPFHADTNPSFFVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSQKYRINIKEYKNTNT--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+S+ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNAKGYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDTSVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNAYGIERAVNIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEESKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ G+ AF K++ SL + D L+ + N + K+ +++ + Sbjct: 339 DEFLKKNGREAFLKVVENSLEIFDFLYNLYSSEYDLNNNIIAKQNFVERFKDFFSNVDND 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + D+ ++ K K Sbjct: 399 LEKEMYLKKLSEKIDISIDVLRKTLVEQNKKHVTRKDYLDENQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ L+ P +E + N + + + + +E Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKEEKLESDIANRIFKFFNQKIKENLFFDSNIIMKEFK 510 Query: 539 QRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----L 590 + + E E +L R + D L E ++ + ++ L + + R Sbjct: 511 KYVEESNDFSQYEKNNELARIIMDYILIPNKIEEERENI-ELFKSYLRVKLKLRDKTKDD 569 Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 ++++ E +++K+IA+ + E K L Sbjct: 570 IAKKIEFGKLKKEIAKAKSVEEFIKVYNSFKYL 602 >gi|118586867|ref|ZP_01544301.1| DNA primase [Oenococcus oeni ATCC BAA-1163] gi|118432699|gb|EAV39431.1| DNA primase [Oenococcus oeni ATCC BAA-1163] Length = 627 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 141/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+++ I I ++IG+ VD ++ +W CPF E +PSF ++ Y Sbjct: 19 IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 73 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 C+SC G+ ++S G SF ++V +A G+ + + + + LI L Sbjct: 74 KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 133 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A++ F H L N L Y L+ER + I F+LG+ P +K Sbjct: 134 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 193 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++ +I + + +D F NR++FP++ S G ++ F GRTL K S KY+NS E Sbjct: 194 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 251 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LY+F A + S + ++L+EGY+DV++ +AG+ ++S+ Sbjct: 252 TAVFKKSKLLYHFDVAKQAAKVSQK----------LLLLEGYLDVIAAHKAGIDYGIASM 301 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ QL+L+ + +P++ + +DGD G A ++AI+ + ++ V + +D Sbjct: 302 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 359 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ G A +K +S + D ++ + R+ ++ L N +N D Sbjct: 360 PDEYLQRNGPDALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 419 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + D+ K + + +++S + L Sbjct: 420 PIANDLTLKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 479 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + ++ E ++++ I H + E ++ A + + + Q L+ FL + + Sbjct: 480 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 537 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + L S + D + L R +Q ++ Sbjct: 538 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 590 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I++QI + + ++ L L ++ + Sbjct: 591 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 622 >gi|46199200|ref|YP_004867.1| DNA primase [Thermus thermophilus HB27] gi|46196825|gb|AAS81240.1| DNA primase [Thermus thermophilus HB27] Length = 590 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 141/626 (22%), Positives = 251/626 (40%), Gaps = 61/626 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + + + ++ +YV G + CPFH EKTPSF+ ++ KG +YCF C Sbjct: 7 VELIKSRLSLREVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFYCFGC 62 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD +F+ G F E+++RLA AGV LP K + + +L+ ++ +A + Sbjct: 63 KAGGDLFAFVQRAEGLDFPEALERLAEEAGVELPRR-----KAPERRRELLEVLALAQTY 117 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F L YL +RG+ ++ F LGYAP L L + G + E+ + AG Sbjct: 118 FLEHLHAH--PEALAYLRKRGLTEESVARFGLGYAPPKGDGLVAFLARHGVAPEEGVRAG 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +L + DR R+R+ FPI+ + G+V+AF GR L + KYLN+PET LF K + Sbjct: 176 VLAERQG--RFVDRLRHRITFPIKDAFGRVVAFTGRALGED-GPKYLNTPETPLFRKQEV 232 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 L+ + A L+ I+VEG D ++L Q G V+ LG+ L+E Q Sbjct: 233 LFAYPEARPALR-----------EGRAIVVEGLFDAIALHQLGFPETVAVLGSGLSEGQA 281 Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365 LL K + L FD D+ G +A ++++L L + + + +DP + Sbjct: 282 LLLKKAGVLEVYLAFDADEAGQKATLQSLNLELAP----RFLFYAVRLPAKDPGELLLHP 337 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G+ F+K + E+LP V ++ + + P+ + ++ L + L Sbjct: 338 EGRALFQKALEEALPEVAFRFEEASRGLDLSRPEHKRKVLEALTPRM-------LTPEPF 390 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + +RL+ L + + + + R R + K L E Sbjct: 391 DPVAERLKALVVERLGLSPKSLEDYLASLRTRGRP-----APPPPPPPLTPGNKTLLLEL 445 Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + L++ P + + + + + ++ Sbjct: 446 DAIALLLSAPE--ERFLELVDYVETQVWPPEGSFLGEFLALARKEPRRDH---------- 493 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L Q + R +++ LA R L + +++ +AQ Sbjct: 494 -LRRTLSQREEGGRLFERLLLAPRGEDPRLQEKLDHTLA-RLREAYLQERLAKVKAALAQ 551 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630 + L+ E+ + I Sbjct: 552 ---NPDPPTLERLLKEYQEIRVAIEA 574 >gi|55981229|ref|YP_144526.1| DNA primase [Thermus thermophilus HB8] gi|55772642|dbj|BAD71083.1| DNA primase [Thermus thermophilus HB8] Length = 590 Score = 276 bits (706), Expect = 6e-72, Method: Composition-based stats. Identities = 141/626 (22%), Positives = 251/626 (40%), Gaps = 61/626 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + + + ++ +YV G + CPFH EKTPSF+ ++ KG +YCF C Sbjct: 7 VELIKSRLSLREVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFYCFGC 62 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD +F+ G F E+++RLA AGV LP K + + +L+ ++ +A + Sbjct: 63 KAGGDLFAFVQRAEGLDFPEALERLAEEAGVELPRR-----KAPERRRELLEVLALAQTY 117 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F L YL +RG+ ++ F LGYAP L L + G + E+ + AG Sbjct: 118 FLEHLHAH--PEALAYLRKRGLTEESVARFGLGYAPPKGDGLVAFLARHGVAPEEGVRAG 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +L + DR R+R+ FPI+ + G+V+AF GR L + KYLN+PET LF K + Sbjct: 176 VLAERQG--RFVDRLRHRITFPIKDAFGRVVAFTGRALGED-GPKYLNTPETPLFRKQEV 232 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 L+ + A L+ I+VEG D ++L Q G V+ LG+ L+E Q Sbjct: 233 LFAYPEARPALR-----------EGRAIVVEGLFDAIALHQLGFPETVAVLGSGLSEGQA 281 Query: 308 RLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365 LL K + L FD D+ G +A ++++L L + + + +DP + Sbjct: 282 LLLKKAGVLEVYLAFDADEAGQKATLQSLNLELAP----RFLFYAVRLPAKDPGELLLHP 337 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G+ F+K + E+LP V ++ + + P+ + ++ L + L Sbjct: 338 EGRALFQKALEEALPEVAFRFEEASRGLDLSRPEHKRKVLEALTPRM-------LTPEPF 390 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + +RL+ L + + + + R R + K L E Sbjct: 391 DPVAERLKALVVERLGLSPKSLEDYLASLRTRGRP-----APPPPPPPPIPGNKTLLLEL 445 Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + L++ P + + + + + ++ Sbjct: 446 DAIALLLSAPE--ERFLELVDYVETQVWPPEGSFLGEFLALARKEPRRDH---------- 493 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L Q + R +++ LA R L + +++ +AQ Sbjct: 494 -LRRTLSQREEGGRLFERLLLAPRGEDPRLQEKLDHTLA-RLREAYLQERLAKVKAALAQ 551 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630 + L+ E+ + I Sbjct: 552 ---NPDPPTLERLLKEYQEIRVAIEA 574 >gi|317008690|gb|ADU79270.1| DNA primase [Helicobacter pylori India7] Length = 559 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 137/524 (26%), Positives = 222/524 (42%), Gaps = 39/524 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNPIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +I G+L D +Y RF +R++FPI + QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIGLGVLGKSDKKDKTYLRFLDRIMFPIYNPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+D + L QAG +N ++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDAILLHQAGFKNATATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G VL DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVVLFENNLDPAEM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + Sbjct: 393 EYKPLIASLLQAPLHVLGIRGPASFQPF--------YPKTEKPNHAQKFANAPNTMSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFS 524 E ++ L+ ++L + + + E L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLD 488 >gi|261749375|ref|YP_003257060.1| DNA primase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497467|gb|ACX83917.1| DNA primase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 614 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 144/650 (22%), Positives = 267/650 (41%), Gaps = 61/650 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ IK + I +IG ++ + N Y PF +EKTPS + K + Sbjct: 2 ISKETIKRIFSVSCIEEVIGDFISLKKSGLN-----YRGLSPFSNEKTPSLIVSPIKKIW 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 FS G+ ++FL +++ES+ LA + + ++ +L + + Sbjct: 57 KDFSSGKGGNIITFLMEHENYTYVESLHYLAKKYDIKIQEEKKNTFIRKIDHENLYLIQD 116 Query: 123 VATDFFHHSLKNARDKRL---HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF L ++ + Y + +RG++ I F+LG+AP E +KGF Sbjct: 117 YAKCFFMKQLSYTKEGQEIGLIYLMKQRGLNMKIIHQFELGFAPSFWTKFTETALKKGFQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPE 238 + + ++GL ++ +D FR R++FPI G+VI FGGR + KYLNS E Sbjct: 177 IQDLKKSGLTGFKRSNH--FDCFRKRVMFPIHDLSGRVIGFGGRKIDNSSRSIKYLNSSE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 +F K K LY F A + K LVEGY DVLSL Q+G++NVVSS Sbjct: 235 NDIFQKSKILYGLFQAQKNILK----------EDLCYLVEGYTDVLSLHQSGIKNVVSSS 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT Q+ L+ + + IVL +DGD G++A+ + I++ L + + GED Sbjct: 285 GTSLTIDQILLIKRFTKSIVLFYDGDRSGIQASLRVINM---ILEQEMDLRILFFYNGED 341 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD + Y + + + + K+ E + P +++ L ++ I+ I + Sbjct: 342 PDYLAKKYSSSQLREFLGKKSYHFISFKKKIYEKFHQDDPIKKSFLVSNILKSISKIPNL 401 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y Q Q + I E + K + + + + + Sbjct: 402 LQRELYIQETSKLFQLRQEVLIYELERINKKKKLYKKIENH---------PIRLNSERNN 452 Query: 479 KPSLREAALLLTLINHPA------------ILQEQYQELAD--IRYDNNELQKLWSFLFS 524 L E L+ ++N+ + +E + D R+ + QK++ + Sbjct: 453 TLLLLEEKLIQLILNYGNKIFKKGGTHTTTVFEEIFHTFQDYNFRFSLDSHQKIFDKIC- 511 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E P + + ++ ++ + Y + L Sbjct: 512 LQKENLEKNPSFVVEDEKKK---------KSYSLSQWNRKGIEVSSQEENIDRYLMDILL 562 Query: 585 YKR----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + +L+ ++ +K+I + + +K L ++ +E++ ++H+ Sbjct: 563 RYKTQYILKLIQQEIRNFQKEIRRDKNQMILKKIMYLTNLKNELNKKLHR 612 >gi|71466860|emb|CAH41004.1| DnaG protein [Oenococcus oeni] Length = 613 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 141/632 (22%), Positives = 274/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+++ I I ++IG+ VD ++ +W CPF E +PSF ++ Y Sbjct: 5 IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 C+SC G+ ++S G SF ++V +A G+ + + + + LI L Sbjct: 60 KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A++ F H L N L Y L+ER + I F+LG+ P +K Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++ +I + + +D F NR++FP++ S G ++ F GRTL K S KY+NS E Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LY+F A + S ++L+EGY+DV++ +AG+ ++S+ Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ QL+L+ + +P++ + +DGD G A ++AI+ + ++ V + +D Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ G A +K +S + D ++ + R+ ++ L N +N D Sbjct: 346 PDEYLQRNGPDALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + D+ K + + +++S + L Sbjct: 406 PIANDLTLKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + ++ E ++++ I H + E ++ A + + + Q L+ FL + + Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + L S + D + L R +Q ++ Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I++QI + + ++ L L ++ + Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608 >gi|329766844|ref|ZP_08258373.1| hypothetical protein HMPREF0428_00070 [Gemella haemolysans M341] gi|328838570|gb|EGF88176.1| hypothetical protein HMPREF0428_00070 [Gemella haemolysans M341] Length = 596 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 144/633 (22%), Positives = 254/633 (40%), Gaps = 47/633 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + +I I +L+ +YV ++R N Y CPFH+EKTPSF + K Sbjct: 3 KISKQDIDYIFDNIDIVSLVSEYVKLEKRGQN-----YLGLCPFHNEKTPSFTVSPEKKI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 +CF C G+ F+S + ++ +++ +L A G+ + + + Sbjct: 58 AHCFGCGKGGNIFQFVSIIENITYNQAIVKLGARLGLNIESKVNLEANYDLNNELDIMYY 117 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + D++++ L + YL RG+ I+ F +GYAP Sbjct: 118 GHMLLADYYNYILLNTKEAEEALNYLLNRGLSIDVIKHFNIGYAPRDNNIALNFFNSNQI 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSP 237 S + ++EAGLL + S YD F++R++FPI++++ QV+AF GRT+S +SV KY N+ Sbjct: 178 SLDLMVEAGLLGK-NESGNYYDVFKDRVMFPIKNNQNQVVAFSGRTMSTDKSVAKYYNTH 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K LYNF A ++ K + +IL EGYMDV+ Q G++N V+ Sbjct: 237 ETKIFEKRTVLYNFSDARAFIAK----------ENEVILCEGYMDVIKAHQNGIKNAVAL 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT + +L+ + L ++ L D DD G + I++ + + V + S + Sbjct: 287 MGTNIDNNKLKEILSLVKKVTLSLDNDDAG---SKAQIEIGNRIIQTTDNVYKLKFSGAK 343 Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 D D F+ I + +N S + R + + L I Sbjct: 344 DLDEFLSDKNSKNKDFDAVNYIKNNKEHFINYKIEYCKNDSKTNIELRIQYKNELLKNIA 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +++D+ LRY + + Q + E K+ A +L + + Sbjct: 404 YMEDESLRYILLTNLAEEFGIERQVLLRELGQVNVKRKQAAVEWVAPSNPAQLFRVTNYD 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 KL K L A+ E+Y ++ + L FL + F Sbjct: 464 KKLCK--------LFKYFFVDRALFIEKYNDIEKCNFPQEVFVNLMDFLVIYYNNNLEFH 515 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + + L +D E V+V Y + + + Sbjct: 516 IHKFIHSIEDDEVVRLATYIDETD------FLIEENPTVEVVSDYIKYFSDNQIT----- 564 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 EEI+ ++ + + E L+S L + Sbjct: 565 -LEEIKDRLRVAIQEMDVETQKELLSQLKKYKK 596 >gi|19704654|ref|NP_604216.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714960|gb|AAL95515.1| DNA primase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 603 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 155/633 (24%), Positives = 277/633 (43%), Gaps = 43/633 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + ++ I LL ++ I ++G++++ + + Y CPFH + PSF K Sbjct: 1 MYFKQEDIDKLLDNLRIEEVVGEFIELKKVGS-----SYRGLCPFHADTNPSFFVTPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSQKYRINIKEYKNTNT--NENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+S+ Sbjct: 114 MEDSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYELLNAKGYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDTSVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNAYGIERAVNIKNK-----------NYSILMEGYMDVLSANIYGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEESKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS-FNTPDERAELEIHLKNCINHIKDQ 418 D F++ G+ AF K++ SL + D L+ + N + K+ +++ + Sbjct: 339 DEFLKKNGREAFLKVVENSLEIFDFLYNLYSSEYDLNNNIIAKQNFVERFKDFFSNVDND 398 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + + +++ + + D+ ++ K K Sbjct: 399 LEKEMYLKKLSEKIDISIDVLRKTLVEQNKKHVTRKDYLDENQEK--------IEKKEFK 450 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + E A++ L+ P +E + N + + + + +E Sbjct: 451 QANNLEMAIVKMLLRKPEYYNFFKKEKLESDIANKIFKFFNQKIKENLFFDSNIIMKEFK 510 Query: 539 QRLCERG---FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL----- 590 + + E E +L R + D L E ++ + ++ L + + R Sbjct: 511 KYVEESNDFSQYEKNNELARIIMDYILIPNKIEEERENI-ELFKSYLRVKLKLRDKTKDN 569 Query: 591 LSRQKE--EIEKQIAQVTAKGEAEKTAILISIL 621 ++++ E +++K+IA+ + E K L Sbjct: 570 IAKKIEFGKLKKEIAKAKSVEEFIKVYNSFKYL 602 >gi|330443840|ref|YP_004376826.1| DNA primase [Chlamydophila pecorum E58] gi|328806950|gb|AEB41123.1| DNA primase [Chlamydophila pecorum E58] Length = 599 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 146/598 (24%), Positives = 246/598 (41%), Gaps = 43/598 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y +++L I I +++ ++V R Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEQSLENLRHAIDIVDVLSEHVHLKRSGA-----TYKACCPFHTEKTPSFIVNPTGAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLIRL 120 +CF C GD +SFL LG SF E+V LA V L V + + +L R+ Sbjct: 57 HCFGCGAHGDAISFLMQYLGYSFTEAVLVLAKRFHVELEVASKEARVSSSSGAKEELRRI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 FF + L + + YL +RGI I+ F LGYAP+ + L+ + Sbjct: 117 NYEVEKFFRYCLFHLPEGLQALRYLYQRGISPDVIDRFHLGYAPEQQVFLQGMQDKHITQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 ++ ++ F R+IFPI + G + F R L + KY+N+PE Sbjct: 177 KQLQE-------SGFFGGNWFLFSRRIIFPIHDALGHTLGFSSRKFLEGMQGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T+LF K + LY + + K R +ILVEG D L + +G ++ Sbjct: 230 TLLFKKSRILYGLHCSRRRITKEKR----------VILVEGQADCLQMIDSGFNCTLAVQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA TE ++ L ++ L FD D G +AA + DL G V+ L GE Sbjct: 280 GTAFTEDHVKELEKLGILKVFLLFDNDAAGNKAALRVGDLCQV---AGMAVSVARLPDGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD+F+ G +A +L+ +S + L + + +P E+A + + I + Sbjct: 337 DPDTFLMLRGHSALIELLEKSENYLAFLIGEKIKAYPNFSPQEKALVVEEIVRQIKRWGN 396 Query: 418 QKLRYYYSQAIRDRL---QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L Y + + + + + + G + + R+ +++ Sbjct: 397 PVLVYEHLKQLASLMTIPEDMVFALAQPQVKAGTFSPSAPPSSSKTQIIPRIHSDVIIET 456 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ-KYFL 533 + + +A L P Q + + + + E ++L++FL S + Q K Sbjct: 457 DVLRCMLFCKAEDLYI----PYTAQYYF---SPSDFKHPECKRLFAFLISYYETQKKNAS 509 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 EE L + +LL + R++ L + A + ++ + L Sbjct: 510 LEEALAELSDPKIIDLLTK--RRINTEILSTIFLNALRKLSDRLWRDKNLSSVKSMAL 565 >gi|325295046|ref|YP_004281560.1| DNA primase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065494|gb|ADY73501.1| DNA primase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 552 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 140/625 (22%), Positives = 245/625 (39%), Gaps = 87/625 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P FI+++L + I +++ Y+ + N Y A CPFH EKTPSF + K Sbjct: 5 KIPYSFIQEILSRVDIVDIVSNYIQLKQVGRN-----YTALCPFHPEKTPSFVVSPEKQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + CF C + G+ ++F+ SF E+V+R+A IAG+ LP + E+ +I+ R Sbjct: 60 FKCFGCGIGGNAITFVEKYENLSFSEAVRRVAEIAGIELPSHFKENEESFQIEEAGYR-- 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A +FH L + + YL ERGI + F +GYAP + Sbjct: 118 --AASYFHSKLSS-----ILSYLKERGISEKEAKKFLIGYAPQGYSKELNLNPKLAKELG 170 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 + +A + F RLI PI + G+++AF GRTL +S KY+NSPE+ Sbjct: 171 LL-----------NAKGREFFAERLIVPIFNHFGKIVAFAGRTLKNDKSLPKYVNSPESS 219 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K LY F+ + + K + +++VEGY DV+SL + GV+NVV+ +GT Sbjct: 220 LFKKNSILYGFYQSKETILKEKK----------VVIVEGYFDVISLHKIGVKNVVAPMGT 269 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 +LTE ++++ + + +L FDGD G +A ++ L G V L GEDP Sbjct: 270 SLTENHVKIIKQYASFPILMFDGDSAGRKATIRSAGL---FFAKGIEPFVVHLPEGEDP- 325 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + L+ + +D E+ + + D Sbjct: 326 DSMAISNPDKLKGLLGSPISFIDWALNFVDSFPQREQIGYLKEIVGAILPLRDI--DPLR 383 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + + + R +L + Sbjct: 384 FKLYFAKLSSKYGINEKWLLLNFRFSSR--------------------KALNSENEEEFI 423 Query: 481 SLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 +E + LI P I +++ + + + ++ ++ + + Q EEI Sbjct: 424 PDKEKRFVRALIEKKCPPI------QISPLNFTSQKVSQIVTLI------QNGESIEEIQ 471 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R + L + + T E + V ++ L + + + + Sbjct: 472 ARYPD---------LASLIAETLFLEVTEEELLKAVVSILKKELKRRMKLMKYEEKVK-L 521 Query: 599 EKQIAQVTAKGEAE-KTAILISILH 622 K I + + + + L Sbjct: 522 AKLIQSLEKRDIKDFQVLRNFEQLK 546 >gi|317013436|gb|ADU80872.1| DNA primase [Helicobacter pylori Gambia94/24] Length = 559 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 138/524 (26%), Positives = 225/524 (42%), Gaps = 39/524 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNVALEY----DKSAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKEDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G +AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANHQIETLKNWLSRPIAFIEFVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + ++ + Sbjct: 393 EYKPLIATLLQAPLHVLGIREPASFQPFYPKTEKPNRPQK--------FAHVSSAPSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFS 524 E ++ L+ ++L + + + E L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQEKLD 488 >gi|210134211|ref|YP_002300650.1| DNA primase [Helicobacter pylori P12] gi|210132179|gb|ACJ07170.1| DNA primase DnaG [Helicobacter pylori P12] Length = 559 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 146/595 (24%), Positives = 252/595 (42%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIALEHDKGTYY----DHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP++ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQSKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R + + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMANSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + ++ + Sbjct: 393 EYKPLIASLLQAPLHVLGVRERASFQPFYPKTEKPNRPQK--------FAHVPNTMSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKKARQAIIKLKQGELV 557 >gi|47679389|gb|AAT36675.1| DNA primase [Oenococcus oeni PSU-1] Length = 613 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 142/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+++ I I ++IG+ VD ++ +W CPF E +PSF ++ Y Sbjct: 5 IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 C+SC G+ ++S G SF ++V +A G+ + + + + LI L Sbjct: 60 KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A++ F H L N L Y L+ER + I F+LG+ P +K Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++ +I + + +D F NR++FP++ S G ++ F GRTL K SVKY+NS E Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSVKYINSKE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LY+F A + S ++L+EGY+DV++ +AG+ ++S+ Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ QL+L+ + +P++ + +DGD G A ++AI+ + ++ V + +D Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ G A +K +S + D ++ + R+ ++ L N +N D Sbjct: 346 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + D+ K + + +++S + L Sbjct: 406 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + ++ E ++++ I H + E ++ A + + + Q L+ FL + + Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + L S + D + L R +Q ++ Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I++QI + + ++ L L ++ + Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608 >gi|290890506|ref|ZP_06553581.1| hypothetical protein AWRIB429_0971 [Oenococcus oeni AWRIB429] gi|290479902|gb|EFD88551.1| hypothetical protein AWRIB429_0971 [Oenococcus oeni AWRIB429] Length = 613 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 141/632 (22%), Positives = 274/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+++ I I ++IG+ VD ++ +W CPF E +PSF ++ Y Sbjct: 5 IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 C+SC G+ ++S G SF ++V +A G+ + + + + LI L Sbjct: 60 KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 119 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A++ F H L N L Y L+ER + I F+LG+ P +K Sbjct: 120 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++ +I + + +D F NR++FP++ S G ++ F GRTL K S KY+NS E Sbjct: 180 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSAKYINSKE 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LY+F A + S ++L+EGY+DV++ +AG+ ++S+ Sbjct: 238 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 287 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ QL+L+ + +P++ + +DGD G A ++AI+ + ++ V + +D Sbjct: 288 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 345 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ G A +K +S + D ++ + R+ ++ L N +N D Sbjct: 346 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + D+ K + + +++S + L Sbjct: 406 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 465 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + ++ E ++++ I H + E ++ A + + + Q L+ FL + + Sbjct: 466 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 523 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + L S + D + L R +Q ++ Sbjct: 524 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 576 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I++QI + + ++ L L ++ + Sbjct: 577 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 608 >gi|58698680|ref|ZP_00373571.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] gi|58534811|gb|EAL58919.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] Length = 418 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 145/443 (32%), Positives = 223/443 (50%), Gaps = 38/443 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + + +S+++G+ V +R + CPFH+EKTPSF +++KG YYCF C Sbjct: 4 IDIIKSKLLLSDIVGKKVRLIKRG-----DSFVGLCPFHNEKTPSFSVSNTKGLYYCFGC 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD F+S G SF E++++LA++ GV LP ++ K L +++A ++ Sbjct: 59 LASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLAANW 114 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F ++ + YL +R I I+ FK+GYAP S L+E+L G + +I+ G Sbjct: 115 FAQK-----NQGVVDYLKQRKISPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILIDIG 167 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 L+ D F +RLIFPI+S G+VI FGGR LS + KYLNSPE+ LF K +N Sbjct: 168 LVNK-----NFRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKKREN 222 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY AL+ ++K I++VEGYMD ++L QAG+ N V+ LGTA++ Q+ Sbjct: 223 LYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISAEQI 272 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR--C 365 + LW+ + I +C DGD G AA + +L L L PG + FV L +DP Sbjct: 273 KNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICNELE 332 Query: 366 YGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Y K + S L +N P++ + LE +N I + + Sbjct: 333 YKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISNSSI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEH 443 R YY ++ +L + + Sbjct: 393 RRYYRDYFYNKASELRSSFKKQI 415 >gi|116491025|ref|YP_810569.1| DNA primase [Oenococcus oeni PSU-1] gi|116091750|gb|ABJ56904.1| DNA primase [Oenococcus oeni PSU-1] Length = 610 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 142/632 (22%), Positives = 275/632 (43%), Gaps = 33/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+++ I I ++IG+ VD ++ +W CPF E +PSF ++ Y Sbjct: 2 IPKSTIEEIRNSINIVDVIGKDVDLKKKGK-----YFWGICPFVSENSPSFTVDEENQRY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRL 120 C+SC G+ ++S G SF ++V +A G+ + + + + LI L Sbjct: 57 KCYSCGRSGNVFDYVSEKKGLSFPQAVIEVARNVGIKIDSKYTENTGGHFNENELKLIEL 116 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A++ F H L N L Y L+ER + I F+LG+ P +K Sbjct: 117 NKQASEIFTHLLLNTDLSTNALKYLLEERHLSRETIADFQLGFLPSQWSLHDFFEEKKIP 176 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E ++ +I + + +D F NR++FP++ S G ++ F GRTL K SVKY+NS E Sbjct: 177 VETQLESG--IISQYDDGSFHDVFSNRIMFPLKDSYGNIVGFSGRTLDKNNSVKYINSKE 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K K LY+F A + S ++L+EGY+DV++ +AG+ ++S+ Sbjct: 235 TAVFKKSKLLYHFDVAKQAAK----------VSQKLLLLEGYLDVIAAHKAGIDYGIASM 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GT+LT+ QL+L+ + +P++ + +DGD G A ++AI+ + ++ V + +D Sbjct: 285 GTSLTKDQLQLISRNTPKLTIAYDGDSAGQSATWRAIEEIKNFPH--LQLEIVTIPNQKD 342 Query: 359 PDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 PD +++ G A +K +S + D ++ + R+ ++ L N +N D Sbjct: 343 PDEYLQQNGPGALKKIFEEDSTSINDFAFEYLKKGRNLENVGNLSDYTNDLLNFLNEHPD 402 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + D+ K + + +++S + L Sbjct: 403 PIANDLILKKLSDQFGLSRSVLDQSLKRNDIDVSKRQVGQSSRQNDNPPLKNSRNRNPLI 462 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + ++ E ++++ I H + E ++ A + + + Q L+ FL + + Sbjct: 463 DQEAMIERKIIVSSIYHENVFHEI-EKKAKFTFHDPKNQ-LYYFLIKGYRSKHPGTQSIG 520 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + L S + D + L R +Q ++ Sbjct: 521 INLMKNMTASE-------KDQFNHLISDQIDFYSTDNLEAIDDYLWQLNRRIPFEKQIQQ 573 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I++QI + + ++ L L ++ + Sbjct: 574 IKQQIQEAINLNQNDRIKELNVKLVKLMKERA 605 >gi|317495392|ref|ZP_07953761.1| DNA primase [Gemella moribillum M424] gi|316914451|gb|EFV35928.1| DNA primase [Gemella moribillum M424] Length = 596 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 135/633 (21%), Positives = 261/633 (41%), Gaps = 47/633 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + +I I +L+ +Y+ ++R N Y CPFH+EKTPSF + K Sbjct: 3 KISKQDIDYIFENIDIVSLVSEYIKLEKRGQN-----YLGLCPFHNEKTPSFTVSPDKKI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 +CF C G+ F+S + ++ +++ +L G+ L + K + + Sbjct: 58 AHCFGCGKGGNIFQFISLIENITYNQAIVKLGTRLGLNLESNERKEVSYDLNNELDSMYY 117 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + D++++ L + YL +RG+ I+ F LGYAP + Sbjct: 118 GHLLLADYYNYILLNTKEAEGALKYLLDRGLSIDVIKYFNLGYAPRDNNIALNFFKSNNL 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + ++EAGLL DN+ YD F++R++ PI+ ++ QV+AF GRT+S+ ++ KY N+ Sbjct: 178 NLDLMVEAGLLGKNDNND-YYDVFKDRIMIPIKDNKNQVVAFSGRTMSQDKNVPKYYNTH 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K LYNF A +++ K + IIL EGYMDV+ Q G++NVV+ Sbjct: 237 ETKIFEKRTVLYNFSDARSFIAK----------ENEIILCEGYMDVIKAYQNGIKNVVAL 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT + +L + L ++ L D D G I++ + + V + S + Sbjct: 287 MGTNIDNNKLHEILNLVNKVTLSLDNDVAG---TEAQIEIGNRIIKKTDNVYKLKFSGAK 343 Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 D D F+ + + + ++ + ++R + + + I+ Sbjct: 344 DLDEFLTDKNLKNINFDAQSYVTNNKEHFINFKIEYCKDVAKTNIEQRIKFKNEILTNIS 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +++D+ L+Y + + Q E + KK + L ++ Sbjct: 404 YVEDESLKYILLTYLAEEFGIERQVLNRELNQLQTKRKKQTSQWVAPENPKLLFKALNYD 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ K L I + Y +L ++ ++L +L + F Sbjct: 464 KKMCK--------LFKYFFTSRNIFIDNYSKLEQCQFSQEIFERLVDYLIIYYNNNLEFQ 515 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + + L +D D + T ++D ++ K+ + + Sbjct: 516 IYKFIHSIDDEEVARLATYIDE--TDFLIEENPTNEIVIDYIAYFK------KKEISIEK 567 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 KE ++ I ++ + E L+ L + Sbjct: 568 LKELLKVAIQEM----DVEAQKELLEQLKKYKK 596 >gi|237750826|ref|ZP_04581306.1| DNA primase [Helicobacter bilis ATCC 43879] gi|229373271|gb|EEO23662.1| DNA primase [Helicobacter bilis ATCC 43879] Length = 550 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 157/596 (26%), Positives = 257/596 (43%), Gaps = 61/596 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + L I I ++I QY+D + N + A CPFHD+KTPS + KG Sbjct: 3 RFTEASLAHLYESIDIVDVITQYIDVRKVGAN-----FMALCPFHDDKTPSMSISAIKGL 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+C +C G+ + F+ SF ++ Q++AA+ V L +E K+ L+ Sbjct: 58 YHCHACGASGNAIRFVMEYERLSFHDAAQKIAALFNVVLAYEKGYVETKKT------NLL 111 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 F+H++L D + YL R I+ +I F++GY+ +S +LR QK +E Sbjct: 112 PSLALFYHNNLFKHND--MLQYLFSRAINEDSINEFEIGYSGNSYDTLRFLDEQKLSRKE 169 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + L + Y RF NR+IFPI SS G V+ FGGRTLS ++V KYLNSP++ Sbjct: 170 AVEYGVL---TQGNDRDYARFANRIIFPIHSSTGVVVGFGGRTLSADKNVAKYLNSPQSK 226 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F+K K LY + A + K II+ EGY+DV+ L QAG +N V++LGT Sbjct: 227 VFNKSKILYGYHLAKQMIYKQ----------KSIIVCEGYLDVIMLHQAGFKNAVATLGT 276 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 AL E L LL K +PRI +C+DGD+ G+ AA+KA + + G V+L G DP Sbjct: 277 ALNEGHLYLLNKDNPRIYMCYDGDNAGINAAFKAAKFLSQNSKDG---GVVILKDGLDPA 333 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 I F+ + ++P V+ + + ++ N P ++ K ++ + L Sbjct: 334 DMIAQNKIELFKDALNNAMPFVEFVLRHIIKDFDINNPMQKQNALKACKEYLHTLT-PFL 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y Q LQ T++ + Sbjct: 393 QDEYKQKCASLLQISPIYLDTKNQKTNHIEMPKDSTNNF--------------------- 431 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ++L ++ H L + + + + + + + Sbjct: 432 --AEESILYNMLEHKEHFYLAINFLTKEHFQT--YRHEFQLICNQDYDNDRIYALRFKTK 487 Query: 541 ---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L + F E L+ ++ A + ++ +QQ AL++ L R Sbjct: 488 AKILNDEEFKEQLRIF--LLQYAQDMLPKIAISPIESSLKFQQIKALHENIAKLKR 541 >gi|262068175|ref|ZP_06027787.1| DNA primase [Fusobacterium periodonticum ATCC 33693] gi|291378118|gb|EFE85636.1| DNA primase [Fusobacterium periodonticum ATCC 33693] Length = 598 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 143/622 (22%), Positives = 259/622 (41%), Gaps = 33/622 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + I+ LL + I ++G++VD + + Y CPFH + PSF K Sbjct: 1 MYFKNEDIEKLLDSLRIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + ++E+V+ LA V + + K + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAKRYRVNIKEYNAKNTDIDNEK--FYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + YL RG+D+ I+ +LGYAP L + L+ K +S+ Sbjct: 114 MEDSHNFFMDKMFAQESRTALNYLANRGLDTDLIKEHRLGYAPAKWSELYDFLKAKNYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239 E ++ GL I + YD FRNR+IFPI S ++IAFGGR+L K + KY+NSP+T Sbjct: 174 EDLLNLGL-IKKNEEGKIYDTFRNRIIFPIFSISNRIIAFGGRSLEKDDAIPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A N K ++ IL+EGYMDVLS ++ LG Sbjct: 233 PIFKKGKNIYGIERATNIRNK-----------NYSILMEGYMDVLSANIFDFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L+ + S I+LCFD D G A +A G + + +DP Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDTDKAGKAATERA---SFILKSQGFNIRVLQFDGAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ G+ AF +++ SL + D L++ + + + K + Sbjct: 339 DEYLKKNGREAFLEVVKNSLEIFDFLYELYSNEYDLSNTIAKQNFIERFKEFFTSLSTDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Y + + ++ + + + ++ K K+ Sbjct: 399 EREIYLKNLSQKIDISVDILRKTLIEENK--------KKFIAKDYNEEKKEELEKKEFKE 450 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E +++ L+ P + E + N L + +F + L E Sbjct: 451 ANNLELSIIEMLLKKPEYYEFFKDEEFESDMANKTLNFFEEKIKENFNFESNNLMREFEN 510 Query: 540 RLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E + + ++ + I + ++ + L + + ++ Sbjct: 511 YMREDNGHINKSVARIILNYVVDLPQHEKEKKYIKLFKDYFRTKVKLRDKTKDDFQKIVY 570 Query: 598 IEKQIAQVTAKGEAEKTAILIS 619 K ++ E+ + + Sbjct: 571 FSKFKDKIEKSKNVEEFIEIYN 592 >gi|108562437|ref|YP_626753.1| DNA primase [Helicobacter pylori HPAG1] gi|107836210|gb|ABF84079.1| DNA primase [Helicobacter pylori HPAG1] Length = 559 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 147/600 (24%), Positives = 249/600 (41%), Gaps = 53/600 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGAYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIRAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L D +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDKKDKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRRG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ S+ ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIEILKDLLSHSMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + + Sbjct: 393 EYKPLIAALLQAPLHVLGVRERASFQPF--------YPKTEKPNLAQKFAHVPNTMGLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ++ L+ ++L + + + E L ++ Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + L + + L +++ + +L+ ++ L + ++ I K Sbjct: 496 LLDANLP-----LKKGGFEKELRLLILRYFERQLKEIPKSSLSFSEKMIYLKKARQAIMK 550 >gi|237740230|ref|ZP_04570711.1| DNA primase [Fusobacterium sp. 2_1_31] gi|229422247|gb|EEO37294.1| DNA primase [Fusobacterium sp. 2_1_31] Length = 603 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 140/593 (23%), Positives = 255/593 (43%), Gaps = 32/593 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + I+ LL + I ++G++VD + + Y CPFH + PSF K Sbjct: 1 MYFRNEDIEKLLDSLRIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + ++E+V+ LA V + + K + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAQKYRVNIKEYNAKNTDIDNEK--FYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + YL RG+D+ I+ +LGYAP L + L++K +S+ Sbjct: 114 MEDSHNFFMDKMFAQESRTALNYLSNRGLDTDLIKEHRLGYAPAKWSELYDFLKEKNYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I + YD FRNR+IFPI S ++IAFGGR+L K ++ KY+NSP+T Sbjct: 174 EDLLTLGL-IKKNEEGRIYDTFRNRIIFPIYSISNRIIAFGGRSLEKDDTIPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A+N K ++ IL+EGYMDVLS ++ LG Sbjct: 233 PIFKKGKNIYGIERAVNIRNK-----------NYSILMEGYMDVLSANIFDFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L+ + S I+LCFD D G A +A G + + +DP Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDMDKAGKSATERA---SFILKSQGFNIRVLQFDDAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D +++ G+ AF +++ +SL + D L++ + + K ++ Sbjct: 339 DEYLKKNGREAFLEVVQKSLEIFDFLYELYSSEYDLTNIIAKQNFIERFKEFFAYLTTDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + +++ + + ++ + K KK Sbjct: 399 EKEMYLKNLSEKIDISIDILRKTLVEENKK-------KFIVKDYIDEIEEKETEKKEFKK 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E +++ L+ P + E + N L+ + +F + L E Sbjct: 452 ANNLELSIVEMLLKKPEYYEFFKDEKFESDIANKTLKFFEEKIKENFNFESNNLMREFEN 511 Query: 540 RLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + E + ++ + + + + ++ + + R Sbjct: 512 YIRNDNESHSEYINSNIARIILNYVIDTEVKIEEKNFLKLFKDYFRVKVKLRD 564 >gi|222100015|ref|YP_002534583.1| DNA primase [Thermotoga neapolitana DSM 4359] gi|221572405|gb|ACM23217.1| DNA primase [Thermotoga neapolitana DSM 4359] Length = 580 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 141/627 (22%), Positives = 257/627 (40%), Gaps = 65/627 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I+++ + I ++ +YV+ R + Y A CPFH E PSF+ + Y Sbjct: 17 IPREVIEEIKEKVDIVEVVSEYVNLTRVGS-----SYRALCPFHAETNPSFYVHPGLKIY 71 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ + G +F E+++RLA AGV L L E Sbjct: 72 HCFGCGASGDVIKFIQEMEGITFQEALERLARRAGVDLSAYRSTGSSDYAKYVHLY---E 128 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + LK + + YL RG +E + GY P+ E ++ E++ Sbjct: 129 RVWKRYVDELKRSH--QAKEYLLSRGFTEEEMENYGFGYVPEGSEIAVEVGKELNLKEDE 186 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +++ GL + DRF RLI PI++ RGQ++AFGGR L KYLNSP+T F Sbjct: 187 VVKYGLALK--KGNRLVDRFEGRLIVPIKNDRGQIVAFGGRLL-GDGEPKYLNSPDTRYF 243 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ F A + F ++ EGY D L+ + G+ V+ LG +L Sbjct: 244 SKKKTLFLFDEAKKVAK----------DVGFFVVTEGYFDALAFRRDGIPTAVAVLGASL 293 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + + S ++LCFD D GLRA K+++ L V +DPD Sbjct: 294 SREAILKISAYSKNVILCFDNDRAGLRATLKSLE---DLLEYEFNVLIATPDPYKDPDEL 350 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G+ + + ++ +S+ L K +P LK + ++ R Sbjct: 351 FQKEGRGSLKDMLKKSVSFEYFLTKAGEVFFDKGSPAGMRSYLSFLKRWVQRMR----RK 406 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + I + ++++ + +++ + + ++ KG Sbjct: 407 GYLKNIDNLVKEVSSSTQIPENQILNFFESDRSNNVPVQEAKVQKVYDEGKG-------- 458 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L +N+ + + L +++ ++ + + S Sbjct: 459 ----LAYLFLNYENFRERILE-LDLDVLEDHNAKEFFKRVSSI----------------- 496 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E ++ L ++++D ++ E + + L+ + R L ++ EEIEK I Sbjct: 497 -ENINEAIETLPKEMKD-WIFRVLEEVPPPKDPEKFFCDLSERLKTRQLKKRLEEIEKLI 554 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 Q + E+ IL+++ ++ +I Sbjct: 555 KQ---SVDEEEKRILLNMKLDLLRKIK 578 >gi|167724584|ref|ZP_02407820.1| DNA primase [Burkholderia pseudomallei DM98] Length = 331 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 165/335 (49%), Gaps = 34/335 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P F++DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPHSFLQDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFTVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----------DPKIEKKE 111 +CF C G + FL G +F E+VQ LA G+ +P D Sbjct: 57 HCFGCGAHGTAIGFLMEHAGLTFPEAVQELAQSVGLTVPHEPSPMRGGGGSSDGHAPPAA 116 Query: 112 KIQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY-- 167 T L +++ A D++ L+ YL RG+ F LGYAPD Sbjct: 117 SKSVTTALSDVMQTACDYYRKQLRG--APNAIQYLKRRGLTGEIALRFGLGYAPDGWQNL 174 Query: 168 -SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + + R + ++ D + A YDRFR R++FPIR+ +GQVI FGGR L Sbjct: 175 EAAFDDYRHDSLVDAGLVIVSEKTDANGVARRYDRFRERIMFPIRNVKGQVIGFGGRVLD 234 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET LF+KG LY F A ++ + ++VEGYMDV++L Sbjct: 235 GGEP-KYLNSPETPLFNKGSELYGLFEARLAIR----------EHKYALVVEGYMDVVAL 283 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 Q G N V++LGTA T ++ L + + +V F Sbjct: 284 AQLGFPNAVATLGTACTPIHVQKLLRQTDTVVFSF 318 >gi|308183810|ref|YP_003927943.1| DNA primase [Helicobacter pylori SJM180] gi|308059730|gb|ADO01626.1| DNA primase [Helicobacter pylori SJM180] Length = 559 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 147/595 (24%), Positives = 256/595 (43%), Gaps = 45/595 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YV+ + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVELRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA + L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNIVLEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG +++K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSLESIKAFKLGLCTNRID---YGIENKGLNKDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L DN +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKNDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A ++ K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKEHIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G +AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGDPEILLSYDGDKAGRKAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + L+ + ++ + +R ++ + P E+ + + + + L+ Sbjct: 334 IANGQIETLKDLLSRPMAFIEFVLRRMADSYLLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + +Q + Sbjct: 393 EYKPLIATLLQAPLHVLGIRGPASFQPFYPKTENLNQAQK--------FAHVPNTMSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ ++L + + + + + + L + ++ + + L Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQE--FDALCQEKLDDPKLVALLLDANLP 502 Query: 543 ------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E+ L+ + + S + + + + +QA+ K+ L+ Sbjct: 503 LKKGGFEKELRLLILRYFERQLKEIPKSPLSFSEKMIFLKKARQAIMKLKQGELV 557 >gi|207723753|ref|YP_002254151.1| dna primase protein (partial protein n terminus) [Ralstonia solanacearum MolK2] gi|206588957|emb|CAQ35919.1| dna primase protein (partial protein n terminus) [Ralstonia solanacearum MolK2] Length = 361 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 115/320 (35%), Positives = 168/320 (52%), Gaps = 30/320 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117 +CF C G + FL G S++E+++ LA AG+ +P +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A D + L++ YL RG+ F LGYAPD SL Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYMDV++L Q G Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMDVVALAQLG 283 Query: 291 VQNVVSSLGTALTEYQLRLL 310 N V++LGTA T ++ L Sbjct: 284 FANAVATLGTACTPVHVQKL 303 >gi|32491218|ref|NP_871472.1| hypothetical protein WGLp469 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166425|dbj|BAC24615.1| dnaG [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 582 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 144/601 (23%), Positives = 263/601 (43%), Gaps = 46/601 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 FI LL +I I LI ++ + N Y+A CPFH EKTPSF + K F+ Sbjct: 5 ISNLFINRLLENINIIELISSIINLKKSGKN-----YFALCPFHQEKTPSFSVSYEKQFF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK---IEKKEKIQTDLIR 119 +CF C + G+ + FL +FIES++ L+ IAG K ++ K ++D+ + Sbjct: 60 HCFGCGIHGNAIDFLMNYNNLTFIESIEELSNIAGFAFKKAQSKKIINNEELKKRSDIYK 119 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ + + L + + YL+ RG++ +IE F +G++ + + ++ Sbjct: 120 LMNQVSMIYKKILNSKIFIEANDYLNNRGLNIDSIEEFSIGFSSININ--ILNYLKQSLQ 177 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++++ + + + F+NR++ P++ G VIAFGGR++ KYLNS ET Sbjct: 178 NFYLLKSSGIFLINEKKKLSNIFKNRIMIPMKDKYGNVIAFGGRSI-NNFFPKYLNSKET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++F K LY + R+ I+LVEGY DV+SL Q G+ V+SLG Sbjct: 237 LIFKKSNYLYGIYE----------IKKRKIKILKILLVEGYFDVISLSQYGIYYSVASLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 Q++++++L+ +I+ C+DGD G R+A+K + L +L G + F+ L EDP Sbjct: 287 CTTPF-QIKIIFRLTNKIICCYDGDSAGRRSAWKTLINSLSYLEDGREIFFIFLPNNEDP 345 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DS IR GK +FE LI ++ P+ L+ + + D + + + I I + Sbjct: 346 DSLIRKIGKKSFEILIEDAKPMSSFLFDTLIKKSNLYHLDGKVKFIKLILPIIKKIPGKN 405 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR Y + I ++ L + + K + K Sbjct: 406 LRLYIRKEIGYKIGILEDYQLEKFLSLKEIKYKKNKQIKYKNNIMNT------------- 452 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537 L+ LI +P + + + +I+ N ++++ + L +I Sbjct: 453 -------LIGLLIQNPKL-SKLISKKNEIKLYNIRIKEIPFFIELIKICKNNTNINTSQI 504 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + + L+ L + + I + Y+ L + + + ++ Sbjct: 505 LEHYRGKKYHNHLENLAIWDHMIS-ENLIKQIFIETLSSLYKIILVSRQNILISRARIQD 563 Query: 598 I 598 + Sbjct: 564 L 564 >gi|154174744|ref|YP_001409225.1| DNA primase [Campylobacter curvus 525.92] gi|112803554|gb|EAU00898.1| DNA primase [Campylobacter curvus 525.92] Length = 554 Score = 274 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 136/627 (21%), Positives = 259/627 (41%), Gaps = 76/627 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ L I I ++I Y+ + N + CPFHD++ PS + SK + Sbjct: 2 IEPKSIQKLKDQIDIVDIISHYIPVRKMGAN-----FKCVCPFHDDRNPSMSISQSKQIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD + F+ +++E+++++A I+ L + ++ + L + Sbjct: 57 HCFACKAGGDAIKFVMDYEKLNYVEAIEKIAQISNFSLEYTSERNFAPKENKHILENVNA 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ + Y+ RGI+ IE F+LG+A DS ++R +K Sbjct: 117 FYRSAFYKN------DEAVRYIYSRGINDAMIERFELGWAGDSAQTIRLLENEKIEP--- 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + I N Y F +R+ FPI + G+++ FGGRT+ KY+NSP++ +F Sbjct: 168 SEALEVGIVKQNERGIYASFISRITFPIYNHTGRLVGFGGRTI-SNNPAKYVNSPQSAVF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K LY + A + II+ EGY+DV+ L AG N V+ LGTAL Sbjct: 227 DKSKLLYGYHLAKQKI----------FEKKQIIITEGYLDVIMLHFAGFTNAVAVLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE L LL + +VLCFDGD G+ AA K+ L+ + I G + V+++ G DP Sbjct: 277 TEKHLPLLKRDDISVVLCFDGDVAGINAAIKSSHLLSLNEIDG---SVVIIAGGADPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + E+L + L + ++ +N P ++ + ++ ++K+ + Sbjct: 334 VFAGRIKELEELFASGVELGEFYIRQIAKNYDLTRPVQKQKCLEEIETYTKNLKN-IVAS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + L + AR ++ + SQ + + + + + Sbjct: 393 SYAPLVASLLGID----------MNSFSLGGARAQNPQPNSQNFINRPIARTQK----DI 438 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++L +++ + + + + + ++ + + S+ E Sbjct: 439 LEISILKSMLFNENFAAIVLDTIDEKYFLH--HKEGFRAILSNSSESDEI---------- 486 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 LL++++ I D ++ L +F E ++ I Sbjct: 487 ------LLREIELDESA---------MVIGDEKKLLSAIANLKIKFY------ENLQLHI 525 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 + + EK + +I++ + QI Sbjct: 526 RSSSDSDKIEKLQKIAAIINNLKFQIR 552 >gi|317010294|gb|ADU84041.1| DNA primase [Helicobacter pylori SouthAfrica7] Length = 559 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 148/600 (24%), Positives = 246/600 (41%), Gaps = 53/600 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I LL I I +I YVD + + Y ACCPFH+E++ SF N KGFY Sbjct: 2 ILKSSIDRLLQTIDIVEVISSYVDLRKSGS-----SYMACCPFHEERSASFSVNQIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ A SF+E++++LA V L + + L+E Sbjct: 57 HCFGCGASGDSIKFVMAFEKLSFVEALEKLAHRFNVALEY----DKGVYYDHKEDYHLLE 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L N YL +RG+ +I+ FKLG + + KG + +K Sbjct: 113 MVSSLYQEELFN--APFFLNYLQKRGLSMESIKAFKLGLCTNRID---YGIENKGLNRDK 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 +IE G+L DN +Y RF +R++FPI S QV+ FGGRTL K ++ KY+NSP+ LF Sbjct: 168 LIELGVLGKSDNDQKTYLRFLDRIMFPIYSPSAQVVGFGGRTL-KEKAAKYINSPQNKLF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K LY + A + K +I+ EGY+DV+ L QAG +N +++LGTAL Sbjct: 227 DKSSLLYGYHLAKESIYKQ----------KQVIVTEGYLDVILLHQAGFKNAIATLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L LL K P I+L +DGD G AAYKA ++ G +L DP Sbjct: 277 TPSHLPLLKKGEPEILLSYDGDKAGRNAAYKASLMLAKEQRKG---GVILFENNLDPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I + + + ++ + + + + P E+ + + + + L+ Sbjct: 334 IANNQIETLKDWLSRPIAFIEFVLRHMASSYVLDDPLEKDKALKEMLGFLKNF-SLLLQS 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y I LQ + + + + V + Sbjct: 393 EYKPLIAALLQVPSHVLGIKEHSSFQPFYAKMEKFNHSQK--------FVHVSNTLSLEF 444 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E ++ L+ ++L + + + E L ++ Sbjct: 445 LEKLVIRYLLEDRSLLDLAVGYIHSGVFLHKKQEFDALCQE---------KLDDPKLVAL 495 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L + L + + L +++ + AL+ ++ L + ++ I K Sbjct: 496 LLDANLP-----LKQGGFEKELRLLILRYFERQLKEIPKSALSFSEKMIALKKARQSIIK 550 >gi|320104558|ref|YP_004180149.1| DNA primase [Isosphaera pallida ATCC 43644] gi|319751840|gb|ADV63600.1| DNA primase [Isosphaera pallida ATCC 43644] Length = 707 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 159/678 (23%), Positives = 259/678 (38%), Gaps = 75/678 (11%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + + I +IG Y++ + +N Y CPFHD+ PS + S + C+SC Sbjct: 11 RVKAAVDIVAVIGSYLNLTQVGSN-----YRGLCPFHDDHNPSLIVSPSHQTFKCWSCGA 65 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV------VDPKIEKKEKIQTDLIRLIEV 123 GD F+ F E+++ +A AG+ L P + ++ +E Sbjct: 66 GGDVFEFVRRYERVDFGEALRMVADRAGITLSRSRSAGSPKPGGNAPASARPTVLAALEW 125 Query: 124 ATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++F +L + A + YL++RGI S ++ F LGYA + R L R GFS Sbjct: 126 AANWFAETLTLGRTAGADQAAAYLEQRGITSASVARFTLGYASEERDELIRAARLAGFSL 185 Query: 181 EKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-------- 231 + + AGL+ + RFR RLIFPI G+V+AFGGR L E Sbjct: 186 DTLEAAGLVGRSAENPKLVRERFRGRLIFPIHDGLGRVVAFGGRLLPDQERRLKEAGRSA 245 Query: 232 -KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPETI+F K + LY + +++VEGY DV++ Q G Sbjct: 246 AKYLNSPETIVFSKRRVLYGEHL----------ARAAARVRNAVVVVEGYTDVIAAHQVG 295 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 + +VV +LGTAL L L +L+ + L FDGD+ G AA + ++L L H V Sbjct: 296 LTHVVGTLGTALGTEHLGPLRRLADLVYLVFDGDEAGRNAADRTLELFLSH---DLDVRV 352 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT---------PDER 401 + L G DP G FE+ + ++ + + R E N + Sbjct: 353 LTLEPGWDPCDLALSRGAAGFEEALGRAVDPLSLAIDRALERYGLNHAPISWSGETVEAG 412 Query: 402 AELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + + R + + RL+ + R K Sbjct: 413 RRAAEAVVGLLARVPANARRQHGLKLARALDVLSHRLRIPLDDLREALNQARRTAKPRRA 472 Query: 456 HRDQ------KGPSQRLMQSSLVKGKLSKKPSLRE------AALLLTLINHP-AILQEQY 502 R+Q P R + + V + E L+ + HP ++L Sbjct: 473 LREQTAALESSRPVSRTVSTEEVGSTSGLPATGIEQFDVIDRELVTLALEHPASVLPWLS 532 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH-QRLCERGFGELLKQLDRQVRDAG 561 + + + L+ + + + + PE E G+ LL +LD R Sbjct: 533 RRVPVSSLRDAPLRTILQACYDQLADGGFLEPETASCSSEREPGWSVLLDRLDEPHRAIA 592 Query: 562 LWSAT--------TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + ++ A+ + L RQ +++ +AQV E Sbjct: 593 RALLDPIDAGVLPPRVSPAPWQERLAGAMLRWSERDRL-RQIDDLLAALAQVDPLASPED 651 Query: 614 TAILISILHEVHIQIHQI 631 L L + +Q + Sbjct: 652 VQGLRLELDRLSLQRSDL 669 >gi|153952420|ref|YP_001398915.1| DNA primase [Campylobacter jejuni subsp. doylei 269.97] gi|152939866|gb|ABS44607.1| DNA primase [Campylobacter jejuni subsp. doylei 269.97] Length = 605 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 145/644 (22%), Positives = 271/644 (42%), Gaps = 63/644 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A ++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVANLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSTFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESAKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTNLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPEICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + L + L ++ + LAL K+ L I+K + Sbjct: 494 KNIRKNL------NYNEFLLGICKVNLAFLNNVKIKNSTLALKKQLFTL------IDKNL 541 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 V E+ + + +++E + + F +SG Sbjct: 542 NLVIKNLNTEELNNFLKEYLSF---LKHEKNEEILQQSFRNLSG 582 >gi|154249129|ref|YP_001409954.1| DNA primase [Fervidobacterium nodosum Rt17-B1] gi|154153065|gb|ABS60297.1| DNA primase [Fervidobacterium nodosum Rt17-B1] Length = 560 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 123/629 (19%), Positives = 253/629 (40%), Gaps = 74/629 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I+ + I +I +YV+ + +N Y CPFH E +PSF+ + +K Y Sbjct: 2 IPKDIIEKIKEKNDIVEVISEYVNLQKVGSN-----YRGLCPFHLETSPSFYVSPTKNIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + F+ + S+ E++++L G+ + ++++ ++ + Sbjct: 57 HCFGCGASGDVIKFVQQIENISYTEAIKKLGERVGITV-----NFTEEDETRSLYYSFYK 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + + YL +RG + I +++ G++P + ++ ++ S+E Sbjct: 112 QLHQEYIAVL--GKSPNIVDYLKKRGFNEREISLYEFGFSPSNSQLPQKVAQRLQISKEM 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + + D F R+I PI+ G+VIAFGGR KYLNS +T++F Sbjct: 170 LEK--------FGFGHSDPFSGRVIIPIKDDYGRVIAFGGRV-VGDGVPKYLNSQDTLMF 220 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K L+ A Y++ ++I+ EGY DVL+ +AG++N V++LGTAL Sbjct: 221 KKTSTLFMLDSAKEYIK----------EIDYVIICEGYFDVLAFHRAGIKNAVATLGTAL 270 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ + L K + ++L FD D G++A + I+ +L V S+G+D D Sbjct: 271 TKSHIYKLKKYTNNVILAFDSDSAGIKATLRNIETLLSEK---FNVVVANFSKGKDADEV 327 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLR 421 +G + + S + + + P+ +L N + + Sbjct: 328 YFKFGSNGLLEALDNSESSEIFVVNVLSREYDLSNPNGVNTFLRNLAKWKNVFEFNPTAL 387 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + I L + +R S + + + K Sbjct: 388 DNFYKRIASLLNSEKEVIK-------------SRFSTITADSGKSTIYNAQIEERKVKIP 434 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E L+ N+P + + + + + + + + + ++++ L Sbjct: 435 KTEDYLVYIYFNYPDLFKT-------LDFSPD--------ILEGKAREFFLIAKDLNVSL 479 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 +L K + V++ E ++V + + + + R + ++ EI++ Sbjct: 480 E-----QLSKDMGSFVKECL------EKIDIEVDEKVLENIKKDLQIRKIEKRIAEIDEL 528 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQ 630 I + + E L + I++ Sbjct: 529 IKKSVSTDERNILLNARMELVKQKNMINK 557 >gi|255318857|ref|ZP_05360083.1| DNA primase [Acinetobacter radioresistens SK82] gi|262378885|ref|ZP_06072042.1| DNA primase [Acinetobacter radioresistens SH164] gi|255304113|gb|EET83304.1| DNA primase [Acinetobacter radioresistens SK82] gi|262300170|gb|EEY88082.1| DNA primase [Acinetobacter radioresistens SH164] Length = 627 Score = 273 bits (697), Expect = 7e-71, Method: Composition-based stats. Identities = 139/681 (20%), Positives = 267/681 (39%), Gaps = 114/681 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EK+PSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ--TDLI 118 +Y+CF C G+ + FL + +F++ ++ LA+ G+ LP + ++ + + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDSRNFVDVMKDLASQTGIELPKDNQDNKRLSYKREIKKVS 115 Query: 119 RLIEVATDFFHHSLKNARDKRLH------------------------YYLDERGIDSHAI 154 + ++ +++ + + D Sbjct: 116 KPVQAPAAQAKEQIQSPITNTPYTPIDPFAEFQSFDPFEQFENVTDVPVQEGNLYDLLEN 175 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---------------- 198 S + + +Q+G S++ + L ++ Sbjct: 176 IAQFYEQQLPKSQSAQFYFKQRGLSQDTVQFWRLGYAPEDWQHLEKAFPYDIEGLKQLGL 235 Query: 199 ---------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249 +D R+R+IFPIR S+G+V+ FGGR L+ KY+NSP++ +FHK + LY Sbjct: 236 IRSSESGRDFDLLRDRVIFPIRDSKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLY 295 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 + + ++VEGYMDV++L Q G+ V++LGTA L + Sbjct: 296 GLYEGRK------------QKAQDWLIVEGYMDVIALQQYGISGAVATLGTASNTEHLNI 343 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L++ + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 344 LFRQNNRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPDQHDPDSLIRREGLE 403 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAI 428 F++L+ ++ L D ++ T+ R ++P+ ++++ L+ + + RY +Q+ Sbjct: 404 NFQRLLEQAPLLSDFVFAHLTQQRDVSSPEGKSQVMGELRELTDLLPKQGSFRYLLTQSF 463 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 +++L + + + + E + Sbjct: 464 KEKLGLGKRFTPKLSNDASLSFNIRTKD---------------------------EDFAI 496 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFG 547 LI HP + ++ L + + L ++ + L F E ++ L + Sbjct: 497 AMLIRHPYLYI-HFETLRAFIHPDELLAQILAILDKIFDELPDDQELAVYYVLGACSMYC 555 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 + + ++ L A ++ + AL + + L ++ + I Sbjct: 556 HAVADILQRTNIESLIPAP------EMADKLAKEYALGLQEKYLKQKLKSPISLI----- 604 Query: 608 KGEAEKTAILISILHEVHIQI 628 ++ L L+E+ +I Sbjct: 605 -----ESRNLRQQLNELTKKI 620 >gi|262373262|ref|ZP_06066541.1| DNA primase [Acinetobacter junii SH205] gi|262313287|gb|EEY94372.1| DNA primase [Acinetobacter junii SH205] Length = 627 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 154/668 (23%), Positives = 256/668 (38%), Gaps = 113/668 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EK+PSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116 +Y+CF C G+ + FL + G +F++ ++ L+ G+ LP + +K ++ Sbjct: 56 YYHCFGCQANGNAIRFLMDIDGRNFVDVMKELSNKTGIDLPKDNQDNKKLSYKRSSQTIT 115 Query: 117 ------LIRLIEV---ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD--- 164 A D + D+ + + E + G D Sbjct: 116 KTAPTVAKETHTTPPPAVDDYTDGHFVDMDRFIDDPFAQFDQSFAFEENVQEGNLYDLLE 175 Query: 165 -----------SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS--------------- 198 + + + RQ+G S + I L ++ Sbjct: 176 NVAQFYERQLPNSQKAQNYFRQRGLSPQTIQFWRLGYAPEDWQHLEKAFPQDIEGLKQLG 235 Query: 199 ----------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 +D R R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + L Sbjct: 236 LIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLL 295 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + ++ ++VEGYMDV++L Q G+ V++LGTA L Sbjct: 296 YGLYEGRKL------------KANDWLMVEGYMDVIALQQYGINGAVATLGTASNADHLT 343 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR G Sbjct: 344 TLFKQNSRITIAFDGDAAGQKAARRTLEIALPLLNDGRELKFFVLPNEHDPDSLIRREGL 403 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQA 427 F++L+ +S L D ++ T +TP+ ++ + L+ + RY +Q+ Sbjct: 404 ENFQRLLQQSPLLSDFVFAHLTGQHDVSTPEGKSLVMGELRELTELLPKHGSFRYLLTQS 463 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 R++L R S S ++ K E Sbjct: 464 FREKLGL--------------------GKRFTPQISHDASLSFNIQTKD-------EDFA 496 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--G 545 + L++HP L ++EL + L K+ + + + E + Sbjct: 497 IAILMHHP-FLYIHFEELRAVIDQTELLAKIL-AVLNIVFDDLPDDQELATYYVLGACSN 554 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----------RLLSRQ 594 F + + ++ L A E ++ Y R R L +Q Sbjct: 555 FSHEIADIMQRTNIQSLTQA-PEIADKLAKEYALGLQEKYLRLKLKSPITLIESRNLRQQ 613 Query: 595 KEEIEKQI 602 E+ KQI Sbjct: 614 LNELTKQI 621 >gi|157364825|ref|YP_001471592.1| DNA primase [Thermotoga lettingae TMO] gi|157315429|gb|ABV34528.1| DNA primase [Thermotoga lettingae TMO] Length = 560 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 130/578 (22%), Positives = 236/578 (40%), Gaps = 37/578 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ I+ + + I +I QYV + +N Y CPFH EKTPSFH N + Y+ Sbjct: 3 SKEQIERIKNSVDIVQVISQYVSLQKVGSN-----YRGLCPFHSEKTPSFHVNPTLKLYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F+ + SF E++Q+L AG+ + K++ L R+ Sbjct: 58 CFGCGASGDVIKFIQEIEHISFQEALQKLGRQAGIEV-KFSSSQSGKDEYVEYLFRVHTE 116 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 + + L+ + Y +RG + IE ++ GY P E + K Sbjct: 117 ----YRNCLRKN--SEVVQYFFDRGFNDREIEEYEFGYCPGGSKIAYEVASKLSLKFSKA 170 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 I GL+ + D F NR+I PI+ G+++AFGGRT KYLNSPET F Sbjct: 171 IRYGLMRK--VESGYVDTFENRIIIPIKDDFGRIVAFGGRT-VSNREPKYLNSPETPYFS 227 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K L+ F A ++ F+++ EGY D ++ + GV N V++LGT+L+ Sbjct: 228 KRSVLFMFDKAKKAIK----------GVDFVVVTEGYFDAIAFHRIGVTNAVATLGTSLS 277 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 E L L L+ I+LCFD DD G RA + + L + + + +DPD + Sbjct: 278 EIHLMKLKPLTKNIILCFDSDDAGKRATMSTLKIFL----ENDFDVAIAQFKEKDPDEVL 333 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD--QKLR 421 R G + + ++LP + + + ++ +T + L+ + + R Sbjct: 334 RKSGADMLKDTLKKALPFEEYIVEFYSKQFELSTTSGTERFLMQLRPWTRLMLSLKKIER 393 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y I +L ++E+ + + L+ + + L ++ S Sbjct: 394 YENLLRIISSKTRLSTAQLSEYFKSKAIQRTKFVKTNLPSDEDYLIYLYITREDLRREIS 453 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + +L+ E L + + ++ ++F + +I + + Sbjct: 454 KIDRSLIR------EQTAEILDLLENNLDLSEFDEETRKYIFDVMSKIPPGDSLKIFEDI 507 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + +++ Q+ +R+ + Sbjct: 508 KKNFIRKSIEKRLSQIDSKLAICKDERERANLLRERLR 545 >gi|148270472|ref|YP_001244932.1| DNA primase [Thermotoga petrophila RKU-1] gi|147736016|gb|ABQ47356.1| DNA primase [Thermotoga petrophila RKU-1] Length = 565 Score = 272 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 136/608 (22%), Positives = 238/608 (39%), Gaps = 62/608 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I+++ + I +I +YV+ R + Y A CPFH E PSF+ + Y Sbjct: 2 IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + G SF E+++RLA AG+ L + + + L E Sbjct: 57 HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYIRLY---E 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + K YL RG I F GY P E + E+ Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAEGMNITPEE 171 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ I DRF R++ PI++ G ++AFGGR L E KYLNSPET F Sbjct: 172 LV--RYGIALKKGDRFVDRFEERIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ F A + F ++ EGY D L+ + G+ V+ LG +L Sbjct: 229 SKKKILFLFDEAKKVAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGASL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + L S ++LCFD D G RA K+++ L V S +DPD Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G+ + +K++ S L N+P LK + ++ + Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + +++ + +++ + + LV G S K Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFFESEKSN------------TMLVHGSRSSKVYD 439 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L +N+ + + + L ++ ++ + + Sbjct: 440 EGRGLAYLFLNYEDLRGKILE-LDLEVLEDENAREFFKRVS------------------S 480 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E ++ ++++D + + D + L+ + R + R+ EI++ I Sbjct: 481 DEDLSEAIENFPKELKDWVFETIESIPPPKDPEKFLAD-LSEKLKIRRIERRIAEIDEMI 539 Query: 603 AQVTAKGE 610 +V+ E Sbjct: 540 KKVSNDEE 547 >gi|256028768|ref|ZP_05442602.1| DNA primase [Fusobacterium sp. D11] gi|289766673|ref|ZP_06526051.1| DNA primase [Fusobacterium sp. D11] gi|289718228|gb|EFD82240.1| DNA primase [Fusobacterium sp. D11] Length = 414 Score = 272 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 134/433 (30%), Positives = 217/433 (50%), Gaps = 23/433 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I LL ++ I ++G++++ + + Y CPFH + PSF N K Sbjct: 1 MYYKQEDIDKLLDNLKIEEVVGEFIELKKVGS-----SYKGLCPFHADTNPSFSVNPEKK 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + S+ E+++ L+ + + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNISYTEAIRELSKKYKINIKEYSNTN--INENYEKFYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + + YL RG+D++ I+ +LGYAP L E L KG+++ Sbjct: 114 MENSHNFFMEKIFSQDSRGALEYLSNRGLDTNLIKEHQLGYAPPKWSELYEFLNSKGYND 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPET 239 E ++ GL I YD FRNR+IFPI S G++IAFGGRTL K S KY+NSP+T Sbjct: 174 EDLLALGL-IKKSEEGRIYDAFRNRIIFPIFSPSGRIIAFGGRTLEKDNSVPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A+N K ++ IL+EGYMDVLS G ++ LG Sbjct: 233 PIFKKGKNVYGIERAINIKNK-----------NYSILMEGYMDVLSANIFGFDTSIAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE Q +L+ + S I+L FD D G+ A +A G + + +DP Sbjct: 282 TALTEEQAQLIKRYSSNILLSFDMDKAGISATERA---SFILKSQGFNIRVLQFEGSKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F++ GK AF K++ SL + D L+ + N + K+ ++I++ Sbjct: 339 DEFLKKNGKEAFLKVVENSLEIFDFLYNLYSSEYDLNNIMAKQNFIERFKDFFSNIENDL 398 Query: 420 LRYYYSQAIRDRL 432 + Y + + ++L Sbjct: 399 EKEMYLKKLSEKL 411 >gi|262038192|ref|ZP_06011586.1| DNA primase [Leptotrichia goodfellowii F0264] gi|261747773|gb|EEY35218.1| DNA primase [Leptotrichia goodfellowii F0264] Length = 602 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 144/626 (23%), Positives = 267/626 (42%), Gaps = 34/626 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y I+ L+ ++ I +IG+YV + N Y PF DEKTPSF + K + Sbjct: 2 YKDTEIQKLIDNLDIVQVIGEYVTLKKAGVN-----YKGFSPFKDEKTPSFVVSPVKNIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 FS + G+ +SF + SF E+V+ L+ V + ++ + + T ++ Sbjct: 57 KDFSTGIGGNAISFYMKINNISFYEAVEELSRKYNVSIKKLN-INKNIDNPNTKYYEIMR 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FF +++ N+ + Y++ RG I+ F +G++ +S SL +HL++KG++E Sbjct: 116 EAQTFFKNNIINS--EEALKYMENRGYSREEIQKFDIGFSFNSWDSLLKHLKEKGYNESD 173 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETIL 241 ++E GL I ++ +D FRNR++FPI + ++I FGGRT+ + KYLNSP++ + Sbjct: 174 LLELGL-IRKNDEGNVFDYFRNRIMFPIYNDTMKLIGFGGRTVENNSDIPKYLNSPDSKI 232 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KGK LY ++K IL+EGY+DVL+ + G N V+SLGTA Sbjct: 233 FKKGKELYGLSNRGENIKKK----------GLAILMEGYLDVLTAQKNGFINSVASLGTA 282 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 TE Q +LL K + +++ +D D+ G A KA +++ ++ + +DPD Sbjct: 283 FTEEQAQLLKKYTNNVIIAYDNDEAGKNAIIKAGNILKKQDFNVRCLSI--EGKEKDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +G+ F +++ S D L+ +E+ + N + E K +++ ++ R Sbjct: 341 YLRKHGRKDFLEILKTSKNYFDFLYDYYSEDLNLNEISGKKEFIQKFKGFFSNVINKTER 400 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + L E K D+ ++ ++ K + Sbjct: 401 NLYINKLSVELGIDKDILSEEFV------MKKKDFSDRNPIRKKRHETVATKKTKEELND 454 Query: 482 LREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L E L ++ + ++ ++L + N ++ L + K Sbjct: 455 LLEKETLEFILRYRENGNSEYRKYCEKLESKNFTNIIYGEILEKLKKIEFDMKNLNNSIF 514 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E +L + V + + K+ + + Sbjct: 515 EEEETEMITTMILNANTQPVNAEKEYKDHFKGWFDRELNNALDLTD--KKDVSYKTKLQR 572 Query: 598 IEKQIAQVTAKGEAEKTAILISILHE 623 I+ + E EK ++ Sbjct: 573 IKTDLKSRYDINEIEKEYEEFKLIRR 598 >gi|269121541|ref|YP_003309718.1| DNA primase [Sebaldella termitidis ATCC 33386] gi|268615419|gb|ACZ09787.1| DNA primase [Sebaldella termitidis ATCC 33386] Length = 591 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 142/613 (23%), Positives = 274/613 (44%), Gaps = 38/613 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + I++ + + I +I +YV + N Y PF E+TPSF + K + Sbjct: 2 YEDNEIQEFINKLDIVQVISEYVTLKKSGAN-----YKGLSPFKPERTPSFTVSPGKNIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLI 121 FS + GD ++F + +F E+V+ LA + K K+ ++ Sbjct: 57 KDFSSGIGGDVITFYMKINNLTFAEAVEELANKYNIQFNSRFSGKSSNKQNSLQKFHMIL 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A +F+ ++ K+ YL++RG++ + I+ FKLGYAP++ SL E+ + K +S E Sbjct: 117 QTALEFYSENIFKN--KKALNYLEKRGLNENDIKRFKLGYAPENWDSLLENFKNKDYSNE 174 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 +IE GL I ++ +D FR+R+IFPI + ++ FGGR L + KY+NS E+ + Sbjct: 175 DLIELGL-IKRASTGNFFDVFRDRIIFPIYNKNQNIVGFGGRALDGESTAKYINSQESKV 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K + +Y ++K F+IL+EGYMDVLS + +N V+SLGTA Sbjct: 234 FNKSREVYGLVSRGEKIRKK----------GFVILMEGYMDVLSAHKNDFENAVASLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPD 360 T+ Q +LL + + IV+ +D D+ G A ++A + V + +G +DPD Sbjct: 284 FTDEQAKLLKRYTNNIVISYDNDEAGKNALFRASYI---LKKHEFNVKCLFFPKGIKDPD 340 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F + K F +L+ ES+ + + ++ + + T + + K +++++ Sbjct: 341 EFFQSNDKKKFVELLKESVDIFEYMFSEFSYDIDIKTVEGKKIFIDRFKEFFANLQNRIE 400 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Y + + L Q E K + ++ K + Sbjct: 401 IDIYLDKLSEELGISKQNLEAEILKSNTGKYKKTKTKEFKKEEISIKNKL--------NY 452 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS-DFVEQKYFLPEEIHQ 539 L E + L ++ +P +E ++ L+KL F+ ++ EE + Sbjct: 453 DLLEVSTLKLILKYPEYYKEFAEKEIKSFIIIEILKKLKKIDFNTKILDNSEIDEEE--K 510 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598 +L + E +++++ + T+ ++ + + Y + + + + I Sbjct: 511 KLIFKFSREADLEIEKEDEYYKI--LYTDWFNRELEKEIHKKGQNYFYMKQIEHELKNIH 568 Query: 599 -EKQIAQVTAKGE 610 ++I ++ K + Sbjct: 569 SLQEIKELYNKFK 581 >gi|154148103|ref|YP_001407133.1| DNA primase [Campylobacter hominis ATCC BAA-381] gi|153804112|gb|ABS51119.1| DNA primase [Campylobacter hominis ATCC BAA-381] Length = 548 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 137/596 (22%), Positives = 241/596 (40%), Gaps = 50/596 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I L+ I +IG Y+D + N + A CPFH++ PS + +K Y Sbjct: 2 IAKESIDKLIQISDIVEVIGHYLDVKKSGAN-----FQAICPFHNDTHPSLMISPTKQIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C G ++F+ F+E+VQ LA + L KEK +++E Sbjct: 57 HCFVCEAGGGAINFIMEYEKVGFVEAVQILAKMYNFELSYTSDDFADKEKKDDK--KILE 114 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + ++ L + K+ YL RG+D I+ F LG+AP S ++R ++ Sbjct: 115 MLNAYYQSLLYSN--KKAIDYLYSRGLDDKTIQNFGLGWAPGSANTIRALENEQIEP--- 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + N Y F +R+ FPI R +++ FGGRTL+ KY+NSP++ +F Sbjct: 170 GEALAVGAIKQNENGFYASFIDRITFPIFDERSRIVGFGGRTLNSENKAKYVNSPDSSVF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 +K K Y + A K + +I+ EGYMDV+ L +AG+ N V+ LGTAL Sbjct: 230 NKSKIFYAYDLARKDAVKK----------NELIICEGYMDVIMLHKAGITNAVAVLGTAL 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE L +L ++ I+L FDGD G+RAA ++ +L L + V++ G DP Sbjct: 280 TEQHLPILKRMKFHIILSFDGDTAGIRAAVRSAEL---LLKNEINTSVVIIENGADPADM 336 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ + + + L ++ N + P R E ++ + D + Sbjct: 337 VFAGKIDELREIYSKGVEGGEFLIRQIASNFDLSKPILRKEALSEIQKLTFSL-DSIVAM 395 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L G + N ++ P LM + K + Sbjct: 396 GYENLVSAVLNL----------PIGSFSLTNKKNNLSSSPEIPLMPKAHKK-------DI 438 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L T+I E ++ L + + + +F + I + L Sbjct: 439 AELEILKTMI-----SDENFKLLGLDELKSKNFRA-HADIFEILKSGVKWQENPILRELM 492 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L + + N +R + + + ++ +E+ Sbjct: 493 IDDSIKESNNLRSFSKAISILKINFCKN-ELLRLARSDEKDKFIKMEQIRQEIKEL 547 >gi|315452551|ref|YP_004072821.1| DNA primase [Helicobacter felis ATCC 49179] gi|315131603|emb|CBY82231.1| DNA primase [Helicobacter felis ATCC 49179] Length = 560 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 140/602 (23%), Positives = 239/602 (39%), Gaps = 58/602 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ L I + Y++ R Y A CPFH+EKTPSF N + + Sbjct: 2 ITQESLEQLKQVADIVAVTQNYLELKRAGN-----LYVAICPFHNEKTPSFTINPMRNNF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F+ F+E+VQ+LA + + L + + ++ + L+E Sbjct: 57 KCFGCGKYGNAITFVMEYEQLDFVEAVQKLANMFSISLQYTTTQPKHPQE-----LDLLE 111 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 T + LK+ ++ + + + S ++ + E Sbjct: 112 EMTRCYEGLLKHHKEAQDYLASRDVQAKSVQEFRLGFCVGSRVLEQIQCQRLDRQALLEL 171 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241 + Y RF NRLIFPI + G+++ FGGR L +V KY+NSP++ L Sbjct: 172 GVLGQD-----ERGRIYARFHNRLIFPIHNPNGKIVGFGGRILQPQANVAKYINSPQSAL 226 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+K K LY +F A + KS + +IL EGY+DV+ L QAG ++ V++LGTA Sbjct: 227 FNKSKLLYGYFQARQDIAKSQK----------LILTEGYLDVILLHQAGFKSAVATLGTA 276 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE L L+ + +P +V+ +DGD G AA K + VL G DP Sbjct: 277 LTEQHLPLIERFNPDVVVGYDGDKAGRAAALKGAKM---LAQANRLGGVVLFENGLDPAD 333 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I L+ + +P + + + E P + + + + I + L+ Sbjct: 334 MITQGQVEGISALLNKPIPFAEYVIRAIYERIDRLDPLFKQKALQEMLDFIQTL-SPLLQ 392 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y I L + K + Q+ S+ + Sbjct: 393 ADYRDTIAHLLGIPPTLVSVARHKEAQPSKWTNAPKLQQNESRYVT-------------- 438 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 EA +L LI+ PA+L+ L + K+ + + K+ P +H L Sbjct: 439 --EALILKYLISDPALLERVRPFLEMAFF------KVLNNELLALLAGKHQDPRLLHILL 490 Query: 542 CER------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 R GF E + T + +D ++ Q + L + + L +K Sbjct: 491 DSRLPMHEHGFKEEFIKFLLVSYKEQRQQINTLYSNLDAKERMQMFIDLGIKIKQLRDRK 550 Query: 596 EE 597 + Sbjct: 551 GD 552 >gi|170289133|ref|YP_001739371.1| DNA primase [Thermotoga sp. RQ2] gi|170176636|gb|ACB09688.1| DNA primase [Thermotoga sp. RQ2] Length = 565 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 136/608 (22%), Positives = 235/608 (38%), Gaps = 62/608 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I+++ + I +I +YV+ R + Y A CPFH E PSF+ + Y Sbjct: 2 IPREVIEEIKEKVDIVEVISEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + G SF E+++RLA AG+ L + + + L E Sbjct: 57 HCFGCGASGDVIKFLQEMEGISFQEALERLAKRAGIDLSLYRTEGTSEYGKYICLY---E 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + K YL RG I F GY P E G + Sbjct: 114 ETWKRYVKEL--EKSKEAKDYLKSRGFSEEDIAKFGFGYVPKRSSISIEVAE--GMNIIP 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 I DRF R++ PI++ G ++AFGGR L E KYLNSPET F Sbjct: 170 EELVRYGIALKKGDRFVDRFEGRIVVPIKNDSGHIVAFGGRAL-GNEEPKYLNSPETRYF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ F A + F ++ EGY D L+ + G+ V+ LG +L Sbjct: 229 SKKKILFLFDEAKKVAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGASL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + L S ++LCFD D G RA K+++ L V S +DPD Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G+ + +K++ S L N+P LK + ++ + Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + +++ + +++ + + LV G S K Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFFESEKSN------------TMLVHGSRSSKVYD 439 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L +N+ + + + L ++ ++ + + Sbjct: 440 EGRGLAYLFLNYEDLRGKILE-LDLEVLEDENAKEFFKRVS------------------S 480 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E ++ ++++D + + D + L+ + R + R+ EI++ I Sbjct: 481 DEDLSEAIENFPKELKDWVFETIESIPPPKDPEKFLAD-LSEKLKIRRIERRIAEIDEMI 539 Query: 603 AQVTAKGE 610 +V+ E Sbjct: 540 KKVSNDEE 547 >gi|283957024|ref|ZP_06374496.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp. jejuni 1336] gi|283791525|gb|EFC30322.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp. jejuni 1336] Length = 605 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 270/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTSKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTNLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|86152612|ref|ZP_01070817.1| DNA primase [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843497|gb|EAQ60707.1| DNA primase [Campylobacter jejuni subsp. jejuni HB93-13] Length = 605 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 139/623 (22%), Positives = 270/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEILTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNAPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESAKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|86149285|ref|ZP_01067516.1| DNA primase [Campylobacter jejuni subsp. jejuni CF93-6] gi|218563227|ref|YP_002345007.1| DNA primase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|9910827|sp|Q9PM37|PRIM_CAMJE RecName: Full=DNA primase gi|85840067|gb|EAQ57325.1| DNA primase [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360934|emb|CAL35735.1| DNA primase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926832|gb|ADC29184.1| DNA primase [Campylobacter jejuni subsp. jejuni IA3902] gi|315927612|gb|EFV06943.1| DNA primase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 605 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 139/623 (22%), Positives = 269/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + E Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTAE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|57238649|ref|YP_179780.1| DNA primase [Campylobacter jejuni RM1221] gi|57167453|gb|AAW36232.1| DNA primase [Campylobacter jejuni RM1221] gi|315059088|gb|ADT73417.1| DNA primase [Campylobacter jejuni subsp. jejuni S3] Length = 605 Score = 269 bits (688), Expect = 8e-70, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALEAIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|86152212|ref|ZP_01070423.1| DNA primase [Campylobacter jejuni subsp. jejuni 260.94] gi|85840701|gb|EAQ57952.1| DNA primase [Campylobacter jejuni subsp. jejuni 260.94] Length = 605 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNSVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|88596552|ref|ZP_01099789.1| DNA primase [Campylobacter jejuni subsp. jejuni 84-25] gi|88191393|gb|EAQ95365.1| DNA primase [Campylobacter jejuni subsp. jejuni 84-25] Length = 605 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 139/623 (22%), Positives = 269/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + E Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTAE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKHEKNEEILQQ 575 >gi|167006175|ref|ZP_02271933.1| DNA primase [Campylobacter jejuni subsp. jejuni 81-176] gi|315125042|ref|YP_004067046.1| DNA primase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018764|gb|ADT66857.1| DNA primase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 605 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|315928874|gb|EFV08136.1| DNA primase [Campylobacter jejuni subsp. jejuni 305] Length = 588 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 132/547 (24%), Positives = 242/547 (44%), Gaps = 48/547 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N KGFY Sbjct: 11 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPIKGFY 65 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 66 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 122 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 180 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 238 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 287 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 288 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 344 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 345 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 404 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 449 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 450 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 502 Query: 543 ERGFGEL 549 + L Sbjct: 503 KNIRKNL 509 >gi|317969755|ref|ZP_07971145.1| DNA primase [Synechococcus sp. CB0205] Length = 650 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 157/599 (26%), Positives = 262/599 (43%), Gaps = 37/599 (6%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + +K FYYCFSC G+ + FL L SF + V LA +P+ ++ +++ + Sbjct: 1 MTVSPAKQFYYCFSCGAGGNSIKFLMELQRQSFSDVVLELARKYQLPVETLEGPQQERLR 60 Query: 113 ----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRY 167 + L + + +A +F L+ YL RG+D +E F LGYAP+ Sbjct: 61 QQLSRRDQLHKALSLAAGWFRSQLRAPEGAAALDYLKTSRGLDEATLEAFGLGYAPERWD 120 Query: 168 SLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 L HL+Q +G S E + AGL++ YDRFR+R++ PI +G++I FGGR+L Sbjct: 121 GLLSHLQQVEGLSPELLEAAGLVVPRRGGDGFYDRFRHRVMVPIADRQGRIIGFGGRSLD 180 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 GE KYLNSPET +F KGK+L+ A+N ++K+ R ++VEGY DV++L Sbjct: 181 GGEP-KYLNSPETEVFEKGKHLFGLDKAVNAIRKADRA----------VVVEGYFDVIAL 229 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 AG+ N V++LGTAL+ Q+ L + R++L FD D G+RAA +AI V + Sbjct: 230 HAAGITNAVAALGTALSNQQITQLCRCCDGKRLILNFDADGAGVRAAQRAIGEVEQLALQ 289 Query: 345 G-NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 G + + L G+DPD F++ +G + L+ +S +D + + D+ + Sbjct: 290 GQLELRVLHLPSGKDPDEFLKQHGAGDYRSLLDQSPLWLDWQIDQVLHGCDLSKADQFQK 349 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 L + + +R Y Q + +RL + + R K R + Sbjct: 350 AVTDLVALLGKLPASAVRSRYLQQVAERLSGGQARLALQLEDDLRQQVKGQRWHGRSRRW 409 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWS 520 ++ ++ L EA +L ++ PA EL + ++LW+ Sbjct: 410 EQPGEAGLR--------ERAEAEVLRLYLHCPAYRGPIRAELRRRELDDFAIAHHRQLWA 461 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + S + E R E G L R + D L + ++ + Sbjct: 462 VISSLEEDNLGVGRLEAINRGSEAGAELADLDLPRLLSDQLLLADDPDSG---LPSELLG 518 Query: 581 ALALYKRFRLLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEV--HIQIHQIESQEA 636 L + R Q+ TA E +++ L + ++ +E A Sbjct: 519 RLTPLLEPSDVQRLSLSNPPLQLRGATAALERQRSMKRARHLLDAWSSQRLETLERCIA 577 >gi|121612785|ref|YP_001001281.1| DNA primase [Campylobacter jejuni subsp. jejuni 81-176] gi|121504201|gb|EAQ72538.2| DNA primase [Campylobacter jejuni subsp. jejuni 81-176] Length = 614 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 11 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 65 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 66 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 121 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 122 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLRNQKIPLEDA 179 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 180 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 238 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 287 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 288 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 344 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 345 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 404 SYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEK--------------IHI 449 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 450 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFEN 502 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 503 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 561 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 562 LNNFLKEYLSFLKYEKNEEILQQ 584 >gi|262369407|ref|ZP_06062735.1| DNA primase [Acinetobacter johnsonii SH046] gi|262315475|gb|EEY96514.1| DNA primase [Acinetobacter johnsonii SH046] Length = 631 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 148/686 (21%), Positives = 264/686 (38%), Gaps = 119/686 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I +LIGQ V + Y CCPFH EK+PSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDLIGQRVKLKKSGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----- 115 +++CF C G+ + FL + SFI+ ++ L++ G+ LP + +K + Sbjct: 56 YFHCFGCQANGNAIRFLMDIDSRSFIDVMKDLSSQTGIELPKDNRDSKKLVYKREAKPVQ 115 Query: 116 -------------------DLIRLIEVATDF----FHH---SLKNARDKRLHYYLDERGI 149 + + +F + + Sbjct: 116 KPQVDVAEAKKTEPAPAQHEFQIEHDPFAEFQSMDYQEGYADFDTFEGFNTAPVQEGNLY 175 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS----------- 198 D + +++ +Q+G S + I L ++ Sbjct: 176 DLLENIAQYYELQLPHSRAAQQYFKQRGLSRDTIAYWRLGYAPEDWQHLEKAFPQDIEGL 235 Query: 199 --------------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +D R+R+IFPIR ++G+V+ FGGR L+ KY+NSP++ +FHK Sbjct: 236 KLLGLIRTSDNGRDFDLLRDRVIFPIRDAKGRVVGFGGRALNDEIKPKYINSPDSEVFHK 295 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LY + + ++VEGYMDV++L Q G+ V++LGTA Sbjct: 296 NQLLYGLYEGRK------------QKAQDWLMVEGYMDVIALQQYGIAGAVATLGTASNT 343 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L+K + RI + FDGD G +AA + +++ L L G + F +L DPDS IR Sbjct: 344 EHLNILFKQNNRITIAFDGDVAGQKAARRTLEIALPLLNDGRELKFFVLPNDHDPDSLIR 403 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYY 423 G F KL+ ++ L D ++ T+N ++P+ ++++ L+ + + RY Sbjct: 404 REGIENFNKLLQQAPLLSDFVFAHLTQNHDISSPEGKSQVMSELRQLTDLLPKTGSFRYL 463 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +Q+ +++L F + T N R +D Sbjct: 464 LNQSFKEKLG--FGRRWTPQVSNDASLSFNIRTKD------------------------- 496 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L LI+HP L ++ L ++ L + L S F + + L Sbjct: 497 EDFALAVLIHHP-FLYIHFETLRAYLPEDELLGHVLQVLDSIFDDLPDDQELATYYVLGA 555 Query: 544 -RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + + ++ + + + T E AL + L ++ + + Sbjct: 556 CSRYSNAIADIMQR-TNIEVLTKTPEMA-----DKLASEYALSLEEKYLRQKLKAPLSLL 609 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 ++ L L+E+ +I Sbjct: 610 ----------ESRNLRQKLNELTKKI 625 >gi|167747160|ref|ZP_02419287.1| hypothetical protein ANACAC_01874 [Anaerostipes caccae DSM 14662] gi|167654120|gb|EDR98249.1| hypothetical protein ANACAC_01874 [Anaerostipes caccae DSM 14662] Length = 530 Score = 269 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 139/548 (25%), Positives = 247/548 (45%), Gaps = 28/548 (5%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLI 118 YYCF C G+ +F+ +F E+V+ LA AG+ LP + +++ + L Sbjct: 1 MYYCFGCGAGGNVFTFIMEYENFTFPEAVRYLAERAGMELPEQELSAEAKQQADAKVQLK 60 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A ++F+ L + R ++ YL +RGI I+ F LGYA + L L+ KGF Sbjct: 61 EMNKMAANYFYILLHSKRGEKGLAYLTKRGITGETIKKFGLGYADIYQDDLYRFLKSKGF 120 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+E++ ++ L+ + S D+F NR++FPI+ +VI FGGR + S KYLNS E Sbjct: 121 SDEELKDSALVTIDEARGGS-DKFWNRVMFPIQDVNSRVIGFGGRVM-GDGSPKYLNSRE 178 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T LF K +NLY A + FIIL EGYMDV+S+ QAG N V++L Sbjct: 179 TKLFDKSRNLYGLNFARSS------------REKFIILCEGYMDVISMHQAGFTNAVAAL 226 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA TE LL + + ++L FD D+ G RA +AI + G V + L+ +D Sbjct: 227 GTAFTEGHGMLLKRYTNEVILSFDSDEAGQRAILRAIPI---LKGAGLTVRVLDLTPYKD 283 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD FI+ G + I ++ + + P+E+ + + ++ I++ Sbjct: 284 PDEFIKELGSEELKNRIQKARSSFMFQISVAAGKYNQDDPEEKTKFQHEAAKLLSGIREP 343 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R Y +A+ ++ YG Q+ P ++ + + VK + + Sbjct: 344 LERNNYCEAVSREYFMGVKELKDLVEYYG------TSGYVQEKPKEQERRPAEVKKEEKR 397 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + LL L+N P + Q+ + + LF ++ +P +I Sbjct: 398 QEP--QKLLLTWLVNEPVLFQKLAGIIGPDDFIEPIYHGAAMLLFEEYERDGKVMPAKIL 455 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EE 597 + + + + +L + + D+ + ++ +K K +E Sbjct: 456 NQYTDMEDQKKIAELFNTTLKLKPLPEDNDKALTDIVRKVKEDSIEHKMNESNDIMKWQE 515 Query: 598 IEKQIAQV 605 + ++ ++ Sbjct: 516 LIQEKGRL 523 >gi|294782674|ref|ZP_06748000.1| DNA primase [Fusobacterium sp. 1_1_41FAA] gi|294481315|gb|EFG29090.1| DNA primase [Fusobacterium sp. 1_1_41FAA] Length = 601 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 146/598 (24%), Positives = 256/598 (42%), Gaps = 38/598 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + I+ LL + I ++G++VD + + Y CPFH + PSF K Sbjct: 1 MYFRNEDIEKLLDSLKIEEVVGEFVDLKKSGS-----SYKGLCPFHADTNPSFSVKPEKR 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 CF C G+ ++F S + ++E+V+ LA V + + K + + ++ Sbjct: 56 ICKCFVCGSGGNAINFYSKIKNIPYMEAVKELAQKYRVNIKEHNAKNIDIDNEK--FYQI 113 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + +FF + + YL RG+D+ I+ +LGYAP L E L++K +S+ Sbjct: 114 MEDSHNFFIDKIFAQESRTALNYLANRGLDTDLIKEHRLGYAPAKWSELYEFLKEKNYSD 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239 E ++ GL I + YD FRNR+IFPI S ++IAFGGRTL K + KY+NSP+T Sbjct: 174 EDLLTLGL-IKKNEEGRIYDTFRNRIIFPIYSISNRIIAFGGRTLEKDNSTPKYINSPDT 232 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F KGKN+Y A+N K ++ IL+EGYMDVLS V+ LG Sbjct: 233 PIFKKGKNIYGIERAVNIRNK-----------NYSILMEGYMDVLSANIFDFDTSVAPLG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALT Q +L+ + S I+LCFD D G A +A G + + +DP Sbjct: 282 TALTVEQAQLIKRYSSNILLCFDTDKAGKTATERA---SFILKSQGFNIRVLDFENAKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D ++R GK AF +++ SL + + L++ + + K + Sbjct: 339 DEYLRKNGKEAFLEVVKNSLEIFEFLYELYSSEYDLTNIIAKQNFIDRFKEFFTCLTTDL 398 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Y + + ++++ + + ++K + Sbjct: 399 EKEVYLKNLSEKIEISADILRKTLIEKNKKKFVINDYTEKKEELLEKKEFKKANN----- 453 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E +++ L P + E + N L+ + +F + L E + Sbjct: 454 ---LELSIVEMLFKKPEYYEFFKNEKLESDIGNKTLKFFEEKIKENFKIESNTLMREFEE 510 Query: 540 RL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + + + R + + + + ++ Y + Y R ++ R K Sbjct: 511 YIKNDDNCSKDTKEDIARIILNYAV-----NLDEEKEQKKYIELFKSYFRIKIKLRDK 563 >gi|157415858|ref|YP_001483114.1| DNA primase [Campylobacter jejuni subsp. jejuni 81116] gi|157386822|gb|ABV53137.1| DNA primase [Campylobacter jejuni subsp. jejuni 81116] gi|315931684|gb|EFV10645.1| DNA primase [Campylobacter jejuni subsp. jejuni 327] Length = 605 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 139/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + + II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAQK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|153803749|ref|ZP_01958335.1| DNA primase [Vibrio cholerae MZO-3] gi|124120716|gb|EAY39459.1| DNA primase [Vibrio cholerae MZO-3] Length = 271 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 97/269 (36%), Positives = 142/269 (52%), Gaps = 16/269 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR FI DLL + I ++I V ++ N Y ACCPFH+EKTPSF + K FY Sbjct: 5 IPRSFIDDLLARLDIVDVIDARVKLKKKGKN-----YSACCPFHNEKTPSFSVSQEKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIE-------KKEKI 113 +CF C G+ + F+ F E+++ LA+ G+ + P K + Sbjct: 60 HCFGCGAHGNAIDFVMEYERMEFPEAIEELASTIGLEVQREERTPSSPFAKNTPAVKSED 119 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + L L+ F+ LK +K YL RG+ ++ F +GY D +R + Sbjct: 120 KRSLYDLMGSIAQFYRQQLKVPANKHAIEYLKNRGLSGEIVQKFGIGYVADEWDLVRRNF 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 Q+ SE+ ++ AG+LI+ DN YDRFR R++FPIR RG+VI FGGR +++ + KY Sbjct: 180 GQQRSSEDMLVTAGMLIENDNGRR-YDRFRGRVMFPIRDRRGRVIGFGGR-ITEQGTPKY 237 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSI 262 LNSPET +FHKGK LY + L ++ Sbjct: 238 LNSPETPIFHKGKELYGLYEVLQAYREPP 266 >gi|284044560|ref|YP_003394900.1| DNA primase [Conexibacter woesei DSM 14684] gi|283948781|gb|ADB51525.1| DNA primase [Conexibacter woesei DSM 14684] Length = 641 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 124/452 (27%), Positives = 197/452 (43%), Gaps = 21/452 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y D ++ + + +L+ + R N Y+ CPFH+E+T SFH + Sbjct: 3 RYTADSKDRVVDAVDMISLVSGKTELRRAGVN----SYFGRCPFHEERTGSFHVRPEEKH 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIR 119 Y+CF C GD F+ G F +++ LA GV + DP + + + + L Sbjct: 59 YHCFGCQESGDPFDFVMNTEGLDFRGALETLAERFGVTLEVEDEDPLAKARRERRDRLHD 118 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L++ A ++ L + YL RG+ + +++GYAP + + RQ GF Sbjct: 119 LLDRAAAYYARYLWESAEAAGARDYLARRGLTEETLRTYRVGYAPSAWDKMLLGSRQAGF 178 Query: 179 SEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 SEE+++ GL + YDRFR R++FP+ ++RG+V+ FG R + + KYLN+ Sbjct: 179 SEEELLATGLAQRSKQRRGSLYDRFRERIMFPLANARGKVVGFGARAMRDNQPPKYLNTS 238 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E +FHKG L+ + I+L EGY DVL+L QAGVQN V Sbjct: 239 EGEVFHKGSQLFGID----------IARRAAARAGSIVLAEGYTDVLALHQAGVQNAVGV 288 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT+LTE Q R L + + ++L D D G A +A + + V L G+ Sbjct: 289 MGTSLTEEQARELERTARTLLLALDADRAGQEAMVRASRIAAGRR---LELRVVGLPEGK 345 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DP I+ G A + + S+P V + + + L+ + + Sbjct: 346 DPADLIQEEGPDAVRERVARSVPFVAFHVDKILTGSDLGDAEAKDRAIAELRPVLGPVPP 405 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 LR + I RL Q T Sbjct: 406 SVLREELIRRIAGRLDLSDQLAATLLEQSAEE 437 >gi|241889482|ref|ZP_04776781.1| DNA primase [Gemella haemolysans ATCC 10379] gi|241863789|gb|EER68172.1| DNA primase [Gemella haemolysans ATCC 10379] Length = 596 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 137/615 (22%), Positives = 253/615 (41%), Gaps = 43/615 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + +I I +L+ +YV ++R N Y CPFH+EKTPSF + K Sbjct: 3 KISKQDIDYIFDNIDIVSLVSEYVKLEKRGQN-----YLGLCPFHNEKTPSFTVSSEKKI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLIR 119 +CF C G+ F+S + ++ +++ +L G+ + + K E + + Sbjct: 58 AHCFGCGKGGNIFQFVSLIENITYNQAIVKLGTRLGLDIESNNNKEESYDLNNELDIMYY 117 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + D++++ L + YL +RG+ I+ F LGYAP Sbjct: 118 GHRLLADYYNYILLNTKEAEDALKYLLDRGLSEDVIKHFNLGYAPRDNNIALNFFNSNKI 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSP 237 + + ++EAGLL DN YD F++R++FPI++++ QV+AF GRT+S ++ KY N+ Sbjct: 178 NLDLMVEAGLLGKNDNGD-YYDVFKDRVMFPIKNNQNQVVAFSGRTMSSDKNVPKYYNTH 236 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K LYNF A ++ K + +IL EGYMDV+ Q G++N V+ Sbjct: 237 ETKIFEKRTVLYNFSDARLFIAK----------ENEVILCEGYMDVIKAHQNGMKNAVAL 286 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +GT + +L+ + L +I L D D+ G + I++ + + V + S + Sbjct: 287 MGTNIDNNKLKEVLSLVKKITLSLDNDEAG---SKAQIEIGNRIIQTTDNVYKLKFSGAK 343 Query: 358 DPDSFIRCYGKT----AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 D D F+ E + + +N S + ++R + + + I Sbjct: 344 DLDEFLTEKNTKNPDFDVENYLRNNKEHFINYKIEFCKNDSKSNIEQRIKYKNEILVNIA 403 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +++D+ L+Y + + Q + E KK A + L +++ Sbjct: 404 YVEDESLKYILLTNLAEEFGIERQVLLKELGKVNVKRKKAAVEWVVPTNPELLFRTTNYD 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ K L ++ E+Y +L ++ L +L + F Sbjct: 464 KKMCK--------LFKYFFVDRSLFVEKYNDLEKCQFPQEAFVNLMDYLVIYYNNNLEFH 515 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + + L +D E DV Y + + L Sbjct: 516 IHKFIHSIDDDEVVRLATYIDETD------FLIEENPTADVVGDY--IIYFSNKEMTLKE 567 Query: 594 QKEEIEKQIAQVTAK 608 K+ + I ++ + Sbjct: 568 IKDRLRVAIQEMDTE 582 >gi|332284640|ref|YP_004416551.1| DNA primase [Pusillimonas sp. T7-7] gi|330428593|gb|AEC19927.1| DNA primase [Pusillimonas sp. T7-7] Length = 622 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 160/643 (24%), Positives = 273/643 (42%), Gaps = 80/643 (12%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87 + N + CPFH+EK+PSF + +K FY+CF C G + FL G SF E Sbjct: 2 RKGGANLL-----GLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAVGFLMEHTGASFPE 56 Query: 88 SVQRLAAIAGVPLPVV--DPKIEKKEKIQT----DLIRLIEVATDFFHHSLKNARDKRLH 141 +V+ LAA G+ +P P+ + ++ + ++++ A + LK ++ Sbjct: 57 AVRSLAATVGMTVPEEPRSPRQQVADRRRKEEVNRHQQILDTAQAHYLRELKGSQSA--I 114 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201 YL +RG+ F LG++ R L + + ++E+GL+I+ D+ YDR Sbjct: 115 RYLKQRGLSGEIAARFGLGWSGTDRRGLAAVF--PQYEDALLVESGLVIEADDGRR-YDR 171 Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261 FR R++FPIR++RG +I FGGR + KGE KYLNSPET LF KG LY + ++ Sbjct: 172 FRERIMFPIRNARGNLIGFGGRIIGKGEP-KYLNSPETGLFSKGHELYGMWEGRAGIR-- 228 Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 S ++++VEGYMDV+ L Q G+ N V++LGTA T + ++ L + S +IV F Sbjct: 229 --------SEGYVLVVEGYMDVVGLAQHGLANAVATLGTATTPFHIQKLLRSSNKIVFSF 280 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 DGD G RAA++A++ L + + F+ L DPDS+I+ YG AF+ E++PL Sbjct: 281 DGDKAGRRAAWRALNTCLPLVRDDVSMRFLFLPAEHDPDSYIKEYGAEAFKATAAEAIPL 340 Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-KLRYYYSQAIRDRLQQLFQKYI 440 + + N + RA K + + + LR + +L QL + + Sbjct: 341 SRFMLDELASRHALNEAEGRAACAHEAKPLLALLPEGTTLRIQIEREFA-KLVQLTPEEL 399 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---------------------------- 472 E A P++R+ + S Sbjct: 400 AELMATVPAPAAAATPEPGMPPTERVTRPSQAGGHDEPPGFMDVPVFDDEDYKAYSPGVT 459 Query: 473 ------KGKLSKKPSLREAALLLTL-------INHPAILQEQYQELADIRYDNNELQKLW 519 +G S+ S + ++ + HP ++ + +I ++ L Sbjct: 460 VDNSAVRGAPSRGRSSKARSVTPMAKRLLRLLLAHPELVSGLGDQQLEI-LEHGPHLILV 518 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 L + + Q +L L ++ D +R+ Sbjct: 519 RELIALANMTGARHAGALLQAAEPGSDLETVLATLTPELLDQEDLPHPQIEWNDALRRIE 578 Query: 579 QQALALY--------KRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 +A+ R ++ +E+ ++IA V + + Sbjct: 579 LEAIKAEQSALVEAGLRDDASRKRYQELTRRIALVNSATSHQM 621 >gi|220915873|ref|YP_002491177.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1] gi|219953727|gb|ACL64111.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1] Length = 617 Score = 268 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 245/627 (39%), Gaps = 48/627 (7%) Query: 18 SNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77 +IG++++ R + C FH E+TPSFH + C+ C GD +FL Sbjct: 2 VAVIGRHMELKRSGR-----TWKGNCIFHGERTPSFHVYPEDKHFKCYGCGAYGDVFTFL 56 Query: 78 SALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTDLIRLIEVATDFFHHSLK 133 L G F E V+ LA GV +P + K K + +++ + A ++ L Sbjct: 57 QRLEGKEFPEVVRALAQEVGVEIPEAAEEDSAEARAKRKERNEVLAASDAAARYWAARLA 116 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 + YL+ RG+ ++ F+LG A D+ L L++KG + AGL+I+ + Sbjct: 117 SRFGAPARAYLERRGVTEESVRRFRLGVAADAWNDLAPRLKEKGIGVAALQRAGLVIERE 176 Query: 194 NS-ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFF 252 +YDRFRNRL+FPI GQVI FGGR L + + KY+N+PET L+ K K LY Sbjct: 177 RDGGGTYDRFRNRLMFPIAGMDGQVIGFGGRALGEEQGAKYINTPETPLYKKSKVLYGLD 236 Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312 A ++K + +LVEGY DV+ L Q GV V+ GTALT + LL + Sbjct: 237 LARETIRK----------TRSAVLVEGYFDVIGLHQVGVTGAVAVCGTALTPEHVELLSR 286 Query: 313 L-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 + + FDGD GL A KA + + G + DPD + R G+ Sbjct: 287 CDCREVAVLFDGDVAGLAAPAKAAQALFPAGMAGKVAVLPSAAGKSDPDEYARANGRAGV 346 Query: 372 EKLIVESLPLVDMLWKRETENRSFNTP-----DERAELEIHLKNCINHIKDQKLRYYYSQ 426 + L+ ++PL + L R E + P + + L+ + + + R + Sbjct: 347 DALLAAAVPLSEFLVDRAVERACGDRPREAALERKLAAVRELEPFVRMMPEGLARSVFED 406 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 I RL TE S R A S + A Sbjct: 407 MIARRLDLDPGALRTELSAERRRPGVPAPAPTGHPERPSGAPSRPAPSAGPARGGPSAHA 466 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLW----------SFLFSDFVEQKYFLPEE 536 + L+ P + LA ++ + L D V L + Sbjct: 467 RVRVLL--PGPAADALALLAAFPDLGPVAEEERLPQLLPPGPLADLARDLVRGPVALDDA 524 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + RL ++ V E ++R+ +A L ++ Sbjct: 525 L-ARLSSGADEATARRFRTLVGPGR---PRPEEAERELRKAAVKAT-----LERLDQEYG 575 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHE 623 E +++ + + A+ + L Sbjct: 576 EALRRVTKAGSAA-ADGLDVTAQRLIN 601 >gi|332287750|ref|YP_004422651.1| DNA primase [Chlamydophila psittaci 6BC] gi|313848321|emb|CBY17324.1| putative DNA primase [Chlamydophila psittaci RD1] gi|325506844|gb|ADZ18482.1| DNA primase [Chlamydophila psittaci 6BC] gi|328915005|gb|AEB55838.1| DNA primase [Chlamydophila psittaci 6BC] Length = 591 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 147/609 (24%), Positives = 254/609 (41%), Gaps = 55/609 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I ++ +++ R G Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----GTYKACCPFHVEKTPSFIVNPTGAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CF C GD +SFL LG SF E+V L+ V + + D + + +L ++ Sbjct: 57 HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKIKDTQSPFATGAKDELRQI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F L A + YL RG I F LGYAP+ +R+KG S Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIGRFHLGYAPEQ-TLFVHAMREKGIS 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 E+++ +AG + + F R+IFPI S G + F R L KY+N+PE Sbjct: 176 EKQLEDAGFIGNKWFL------FSRRIIFPIHDSLGHTLGFSSRKFLENTRGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K + L+ + + K R +ILVEG +D L + +G +++ Sbjct: 230 TMIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE ++ L + L FDGDD G++AA + D+ G L +GE Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ +S + L ++ +P E+A + I + Sbjct: 337 DPDSFLMHKGAGVLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + + + + + S + + L K Sbjct: 397 PIVVYEHLKQLASLMMIPESMVFSLAKLE---------SGIAPAKSSVVNKERLPKIHSD 447 Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YF 532 E +L ++ +H +I + + + E +KL+S L + + + Sbjct: 448 VII---ETDVLRCMLFCKTHHTSIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHQRNL 504 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 +E L ++ ELL + R++ L + ++ + +++ + LS Sbjct: 505 PFDEALSLLEDKVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QRHPLS 556 Query: 593 RQKEEIEKQ 601 RQ + +++ Sbjct: 557 RQSKSAQEE 565 >gi|307748494|gb|ADN91764.1| DNA primase [Campylobacter jejuni subsp. jejuni M1] Length = 499 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 127/522 (24%), Positives = 235/522 (45%), Gaps = 44/522 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + + II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAQK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 E L+ L HP I + Q + + + + L + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCF---KHKILLDKILE 479 >gi|57168802|ref|ZP_00367933.1| DNA primase, probable CP0919 , putative [Campylobacter coli RM2228] gi|57019849|gb|EAL56532.1| DNA primase, probable CP0919 , putative [Campylobacter coli RM2228] Length = 608 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 143/625 (22%), Positives = 269/625 (43%), Gaps = 47/625 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCVCPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A + L ++K + + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYT----KEKNENKKELRTILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K YL +R ++ I F+LG+A S S+R +K E+ Sbjct: 113 SLNAYFKSNLK--HHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLFHNEKILLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ + KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDKNNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K +I+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEMIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE L L+ + +++LCFD D+ GL AA ++ L+ H I G LL G+DP Sbjct: 279 TENHLPLIHRYEAKVILCFDNDEAGLNAATRSAFLLSTHKIDGK---VALLEGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + L+ + + L + +R + S N+ ++ + +++ ++ + Sbjct: 336 VANNQSAKLHTLLEKGMDLGEFYIRRILSSFSLNSALDKQKALENIQKYTFSLE-PLVAS 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L + + + + + S + K + Sbjct: 395 SYVGLVSKLLGVDEKLIVLTSNR-------------KPSKTINFNTSFQQTQNHNPKSHI 441 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF----VEQKYFLPEEIH 538 E LL L N+P + E + +++DIR + + L + + + F + Sbjct: 442 TELELLNYLKNNPN-MHELFIKISDIRCF--KHKVLLEKILEHKSYEDSDIREFESKNFS 498 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L + F + +++ + + + A + ++ L + E + Sbjct: 499 KDLSQIEFLWGICKVNLAFLNHINITNSYLALKKQIFTLIEKNFVLLSKNLNDHELVEFL 558 Query: 599 EKQIAQVTAKGEAEKTAILISILHE 623 ++ + + + + EK L LH Sbjct: 559 KENLFLLKNEKDEEKLEALFKNLHR 583 >gi|163781692|ref|ZP_02176692.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1] gi|159882912|gb|EDP76416.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1] Length = 531 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 157/585 (26%), Positives = 257/585 (43%), Gaps = 75/585 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I +L + I +++ +Y+ +R N Y A CPFH +KTPSF+ + S+ + C Sbjct: 2 PSDIDELRRELDIVDVVSEYIKLERAGNN-----YKANCPFHPDKTPSFYVSPSRQIFKC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C V GD + F+S S+ E+ + LA G+ L ++++ + L ++E Sbjct: 57 FGCGVGGDAIKFVSLYENVSYFEAAKHLAKRHGIKL-----NLKEESSEKKKLHEIMERV 111 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + +H L+ +R+ YL RGI+S I+ F LGYAP S +R +G Sbjct: 112 AELYHSKLREN--RRVLEYLKSRGIESSTIKRFSLGYAPASGELVRLLKEIRGLEPYLKT 169 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 L ++ D FRNRL+ PIR + G+V+ FGGR L +GE KY+NSPE+ LF K Sbjct: 170 GNLLQVE---EDRYRDLFRNRLVIPIRDASGRVVGFGGRLL-EGEGPKYVNSPESGLFKK 225 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LY F+ ++YL+ +LVEGY DV++L Q G +N V++LGT+L Sbjct: 226 RELLYGFYEGISYLR----------ELKSALLVEGYFDVIALHQEGFRNTVATLGTSLGR 275 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 +LL ++ R+ L FDGD+ G +A A+ L G V V L G DP F+ Sbjct: 276 EHAQLLSRVVNRVYLLFDGDEAGRKAMRLAV---PHLLRAGLEVFPVFLPEGLDPHDFLL 332 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK + + LI S+ + D+ + + N +KD YY Sbjct: 333 KEGKASLKALIGSSVSVFDL----------------LKKRIESGSDVENSLKDFT---YY 373 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++DR++ ++E S R + K P + + + S E Sbjct: 374 ASFLQDRIRAYT--LLSELSRITRIPVDVLSAKMYKAPENS-------EEEDESRLSFTE 424 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L L+ + L +++ + S E+ Y +PE++ Sbjct: 425 KVFLKGLM---ELRPSV--NLDELKLSTKA----REYAQSIINEEYYPVPEDVLNLKVGD 475 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALYK 586 E L + L E I + R+ ++ + +K Sbjct: 476 IEREFEASL------SRLRIDIPEEEISEAVGVRESVREFIRSHK 514 >gi|281412779|ref|YP_003346858.1| DNA primase [Thermotoga naphthophila RKU-10] gi|281373882|gb|ADA67444.1| DNA primase [Thermotoga naphthophila RKU-10] Length = 565 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 132/608 (21%), Positives = 234/608 (38%), Gaps = 62/608 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 PR+ I+++ + I ++ +YV+ R + Y A CPFH E PSF+ + Y Sbjct: 2 IPREVIEEIKEKVDIVEVVSEYVNLTRVGS-----SYRALCPFHSETNPSFYVHPGLKIY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + G SF E++++LA G+ L + + + L E Sbjct: 57 HCFGCGASGDVIKFLQEMEGISFQEALEKLAKRVGIDLSIYRAEGTSEYGKYVRLY---E 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + L + K YL RG IE F GY P+ E + E+ Sbjct: 114 ETWKRYVKEL--EKSKEAKEYLKSRGFSEEDIEKFGFGYVPERSSISIEVAENMNITPEE 171 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ I DRF R++ PI++ G ++AFGGR+L E KYLNSPET F Sbjct: 172 LV--RYGIALKKGDRLVDRFEGRIVVPIKNDSGHIVAFGGRSL-GNEEPKYLNSPETRYF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ F A + F ++ EGY D L+ + G+ V+ LG L Sbjct: 229 SKKKTLFLFDEAKKLAK----------EVGFFVITEGYFDALAFRRDGIPTAVAVLGANL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + L S ++LCFD D G RA K+++ L V S +DPD Sbjct: 279 SREAILKLSAYSKNVILCFDNDRAGFRATLKSLE---DLLEYEFNVLVATPSPYKDPDEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + G+ + +K++ S L N+P LK + ++ + Sbjct: 336 FQKEGEGSLKKMLKNSRSFEYFLVTAGEVFFDKNSPAGVRSYLSFLKGWVQRMR----KK 391 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + + +++ + ++ + V S K Sbjct: 392 GYLKHVENLVKEASASLQIPENQILNFF------------ESERSNTMPVHESRSSKIYD 439 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 L+ +N+ ++ + L ++ ++ + + S E + E + L Sbjct: 440 EGRGLVYLFLNYEDFREKILE-LDLEVLEDENAKEFFKRVSS--GEDLNEVIENFPKELK 496 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ A + + L+ + R + ++ EI+ I Sbjct: 497 D-----------------WIFEAIENIPPPKDPEKFLADLSEKLKIRRIEKRIAEIDDMI 539 Query: 603 AQVTAKGE 610 + ++ E Sbjct: 540 RKASSDDE 547 >gi|205355650|ref|ZP_03222420.1| DNA primase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346427|gb|EDZ33060.1| DNA primase [Campylobacter jejuni subsp. jejuni CG8421] Length = 605 Score = 267 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 140/623 (22%), Positives = 271/623 (43%), Gaps = 54/623 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINLTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A+++ L ++K++ + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFNNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + T ++ E + L + +R S + ++ + ++ +++ + Sbjct: 336 VAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + + + P ++ + Sbjct: 395 SYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEK--------------IHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ L HP I + Q + + + L +E+K + +I + Sbjct: 441 AELELIAFLKQHPDICNDFKQISDSVCFKHK-------ILLDKILEKKGYEDSDIREFES 493 Query: 543 ER-----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + E L + + V A L + + + + +++ + + + EE Sbjct: 494 KNIRKNLNYSEFLLGICK-VNLAFLNNVKIKNSTLALKKQLFTLIDKNLNLLIKNLNTEE 552 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 + + + + + EK ++ Sbjct: 553 LNNFLKEYLSFLKYEKNEEILQQ 575 >gi|313673329|ref|YP_004051440.1| DNA primase [Calditerrivibrio nitroreducens DSM 19672] gi|312940085|gb|ADR19277.1| DNA primase [Calditerrivibrio nitroreducens DSM 19672] Length = 560 Score = 267 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 136/611 (22%), Positives = 236/611 (38%), Gaps = 73/611 (11%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +L I I++ I QYVD R + Y CPFH+EKTPSF SK ++CF C Sbjct: 6 DAILDRIDIADYISQYVDLKRYGS-----YYKGLCPFHNEKTPSFIVTPSKRLFHCFGCG 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 G+ ++F+ S++++++ LAA AG+ + + ++ + + ++ ++ Sbjct: 61 AAGNLITFVMKYNNLSYVDALRMLAAKAGIDFEKTEKLDKSLVFLKQLHLEIHRLSQNY- 119 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L K Y+ RG I F LG P K +S + I ++GL Sbjct: 120 ---LFGEAGKICLEYILRRGFSELEIGEFGLGVIPKGVNLDPIL---KKYSIDVIKKSGL 173 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 + + RL+FPI+ G+VIAF GR L GE KY+NSPET +F KG L Sbjct: 174 FYYKEGKNIF--KMAGRLLFPIKDQFGEVIAFSGRDL-VGEEPKYINSPETPIFKKGSIL 230 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 YN A Y S + +VEGY DV+ + G +NVVSS+GTA T Q Sbjct: 231 YNLDKAKEYA----------LSQKSLFVVEGYFDVIRMWSKGYKNVVSSMGTAFTTEQAM 280 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 L+ + + ++ FDGD G+ AAYK I+ L +GEDP + K Sbjct: 281 LIKRYAENPIVVFDGDQAGINAAYKTIE---PFTAINTIPEVAFLPKGEDP-DSLLLKDK 336 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 F+ I L ++ E ++ + RA L +++ + L+ Y I Sbjct: 337 EMFDNCISNRKDL--LILMAEIYSKKGGSLSVRASNFKSLIKKLDNFPEANLKNIYLNRI 394 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++ F+ ++ + E L Sbjct: 395 KEIFNLDFEIINENKKIKK------------------------LQNNQKSIKYIYEDDFL 430 Query: 489 LTL--INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + IN ++ + + + + ++++ + + + Sbjct: 431 SAIMQINDEEVVSGVIEGIEKEYFLQQDRRRIFEKIVDNLNNSGNID-----ALFNDEEV 485 Query: 547 GELLKQL-----------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 GELL L + L + +R + + + ++ Sbjct: 486 GELLSYLVSCKVFEEPYRVAIINKEKLVYNYKSNELRKLRDELSKCADDTLKSLDILKKI 545 Query: 596 EEIEKQIAQVT 606 +++ K +++ Sbjct: 546 DKLTKDLSKYN 556 >gi|639846|dbj|BAA03516.1| DNA primase [Lactococcus lactis subsp. lactis] Length = 393 Score = 266 bits (680), Expect = 7e-69, Method: Composition-based stats. Identities = 130/415 (31%), Positives = 198/415 (47%), Gaps = 27/415 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + DL + I++LI QYV R N Y CPFH EKTPSF+ N KGF Sbjct: 3 SLDTEVVNDLKSKVNIADLISQYVALSRTGKN-----YIGLCPFHGEKTPSFNVNAEKGF 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y+CF C GD + FL F+++V+ LA AGV L + D + E+K L + Sbjct: 58 YHCFGCGRSGDAIEFLKEYNQVGFVDAVKELADFAGVTLNISDDR-EEKNNPNAPLFEIN 116 Query: 122 EVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A ++ L + +R YL+ERGI I+ F +G AP+ + ++L K Sbjct: 117 NQAARLYNILLMSTELGERARKYLEERGITDDVIKRFNIGLAPEENDFIFKNLSNK---F 173 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPE 238 ++ I A + ++ +D F NR++FPI + GQ I F GR + + KY+N+ Sbjct: 174 DEEIMAKSGLFHFSNNKVFDAFTNRIMFPITNEYGQTIGFSGRKWQENDDSKAKYINTSA 233 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K L+N A + K + L+EG+MDV++ +AG+ NVV+S+ Sbjct: 234 TTIFDKSYELWNLDKAKPTISKQ----------HEVYLMEGFMDVIASYKAGINNVVASM 283 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTALTE +R L +++ + VL +DGD G A YKAIDL I + V V + G D Sbjct: 284 GTALTEKHVRRLKQMAKKFVLVYDGDSAGQNAIYKAIDL-----IGESAVQIVKVPEGLD 338 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 PD + + YG L+ + + + + I Sbjct: 339 PDEYSKNYGLKGLSALMETGRIQPIEFLIDYLRPENLANLQTQLDFIEQISPMIA 393 >gi|329943169|ref|ZP_08291943.1| DNA primase [Chlamydophila psittaci Cal10] gi|328814716|gb|EGF84706.1| DNA primase [Chlamydophila psittaci Cal10] Length = 591 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 146/609 (23%), Positives = 253/609 (41%), Gaps = 55/609 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I ++ +++ R Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----DTYKACCPFHVEKTPSFIVNPTGAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CF C GD +SFL LG SF E+V L+ V + + D + + +L ++ Sbjct: 57 HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKIKDTQSPFATGAKDELRQI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F L A + YL RG I F LGYAP+ +R+KG S Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIGRFHLGYAPEQ-TLFVHAMREKGIS 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 E+++ +AG + + F R+IFPI S G + F R L KY+N+PE Sbjct: 176 EKQLEDAGFIGNKWFL------FSRRIIFPIHDSLGHTLGFSSRKFLENTRGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T++F K + L+ + + K R +ILVEG +D L + +G +++ Sbjct: 230 TMIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE ++ L + L FDGDD G++AA + D+ G L +GE Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ +S + L ++ +P E+A + I + Sbjct: 337 DPDSFLMHKGAGVLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + + + + + S + + L K Sbjct: 397 PIVVYEHLKQLASLMMIPESMVFSLAKLE---------SGIAPAKSSVVNKERLPKIHSD 447 Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-YF 532 E +L ++ +H +I + + + E +KL+S L + + + Sbjct: 448 VII---ETDVLRCMLFCKTHHTSIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHQRNL 504 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 +E L ++ ELL + R++ L + ++ + +++ + LS Sbjct: 505 PFDEALSLLEDKVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QRHPLS 556 Query: 593 RQKEEIEKQ 601 RQ + +++ Sbjct: 557 RQSKSAQEE 565 >gi|189485246|ref|YP_001956187.1| DNA primase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287205|dbj|BAG13726.1| DNA primase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 588 Score = 266 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 141/636 (22%), Positives = 279/636 (43%), Gaps = 59/636 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M D I+ + + I ++I +Y+ R N + CCPFH+EKTPSF + K Sbjct: 1 MVISEDTIEKIRLSNSIDSVIREYLPDLKRAGRN-----WKVCCPFHNEKTPSFIVSPEK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G + CFSC+V GD F+ L S+IE+V++LA + + + K T L Sbjct: 56 GIFKCFSCNVAGDVFKFVMFLDNISWIEAVKKLAKKTNIEI-QEAKQGIIKLSENTKLFD 114 Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 ++E + +F++ L ++ Y+ +RGI+ A+ FK+G+AP + + +K + Sbjct: 115 ILESSANFYNKCLLERASAQKAREYIKKRGINREAVNKFKIGFAPKGQ--FLQWALEKDY 172 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++ +++AGL I ++ R++FPI +G+++AFGGRT+ +KYLN+PE Sbjct: 173 KDDDLLKAGL-ITRTGRGIFFECMSERVVFPIFDVQGRIVAFGGRTI-ADHKIKYLNTPE 230 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++ K NLY F L L+K + II++EGY+D + L Q G+ V++L Sbjct: 231 TAVYSKSSNLYGLFQTLPELRKERK----------IIVLEGYIDAVILQQFGITGAVATL 280 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T+ +L+ + S + L FD D+ G AA +++++ + L D Sbjct: 281 GTAFTQNHAKLVSRYSDSVTLLFDSDNAGRTAAQRSLEI---LVGDSIECRVSALPEHVD 337 Query: 359 PDSFIRCYGKTAFEKLIVE-SLPLVDMLWKR----ETENRSFNTPDERAELEIHLKNCIN 413 D ++ YGK +F K + + S +D + +R + + ++P+ +A+ L + + Sbjct: 338 ADEYLNQYGKESFLKFLEDSSKSAIDFMIERVLGGLSSDGRKSSPEIKAKAVSALLDFVA 397 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + ++ + + I + + E + + D+ Q + K Sbjct: 398 RSTNSIIQREWIRDIAQHVDVNEEAVWREFEKKQQLRLRGYLQYDKNSVEQTVKVKKDKK 457 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +S + +L ++ ++ +++ +K++ Sbjct: 458 FSMSLEENLLNLI---------LNNRDYIKKTDSNCFEDARCRKIFEL------------ 496 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L G L + D+ + + ++I + + + + R R Sbjct: 497 ---TVSGLNTVGILNTLSEEDKNWFAELILNTIEYSDIGEAFGIILRDIDAGRLERERRR 553 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++EI + ++G+ EK + ++ + Sbjct: 554 LEKEIL-----LVSEGKKEKDKKVFDEYKKLTALLK 584 >gi|88608559|ref|YP_506825.1| DNA primase [Neorickettsia sennetsu str. Miyayama] gi|88600728|gb|ABD46196.1| DNA primase [Neorickettsia sennetsu str. Miyayama] Length = 579 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 158/636 (24%), Positives = 281/636 (44%), Gaps = 65/636 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + +I+ + IP+S ++ + V R + CPFH EKTPSF ND F+YC Sbjct: 3 KKYIELIKERIPVSEVVSRTVKLKRVGS-----RLIGRCPFHQEKTPSFSVNDKGKFFYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD + F+S E+V+ LA+ G+ + + E ++ + +E Sbjct: 58 FGCGKSGDVIDFVSLTKRLDLSEAVEELASSIGIKIDKKNSGTESFIQV----FQFLEEL 113 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 D+F +L + + YY+ R D I FKLGY P + K F I Sbjct: 114 RDWFCSNLNSRVGQEASYYIRNRL-DDDVISEFKLGYCP--SNLTSFINKTKNFPSTVIK 170 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +G+L FR+RL+FPI + +G+VI FG R + +G KY+NS ET F K Sbjct: 171 NSGVLDKLGR-----CYFRDRLVFPIHNIQGKVIGFGSRVVKEGIFPKYINSCETEFFKK 225 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LYN + +NS IILVEGYMDV+SLCQ G ++V+ LGT++T Sbjct: 226 SELLYNIDK------------IPKNSEEPIILVEGYMDVISLCQFGYKSVLGILGTSITS 273 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN--FVLLSRGEDPDSF 362 + L+LL +L ++ CFDGD+ G++AA + ++L++ I + F L G+DPD Sbjct: 274 HHLKLLNRLRRNLIFCFDGDNAGIKAAGRVVELIMDEFINSLEIKTTFSFLPIGKDPDDL 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R AF++++ + L D ++ R ++P++ ELE L+ + ++KD K+R Sbjct: 334 VRSDRA-AFQRVLDGARSLSDTIFFLAKYGRQCSSPEDFIELEKILEKYLINVKDYKIRK 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 ++ + ++ L + + ++L S+ + Sbjct: 393 HFQDFFQQQIFLLKRSLRQR---NFIPAYRGGEDATHFVDVKKLSSSASIHVDKKV---- 445 Query: 483 REAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 LL +I P IL+ ++ + + ++ + KL S + + Sbjct: 446 ---LLLKIVIKFPEILRNGDREEYFSLLKLSDPRHVKLQSSIVQLLNTSIDISGASLE-- 500 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--EEI 598 LL + + L + + ++A L+ R L +Q +E+ Sbjct: 501 ------RALLADSETEASYKLLSDLAS------LPDDIEKATFLWDR---LQKQLWRDEL 545 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ ++ + + + + ++I + E + Sbjct: 546 REEYRRMIHSSDLD--ENKMEEAQRILVKIREAEKE 579 >gi|187918566|ref|YP_001884129.1| DNA primase [Borrelia hermsii DAH] gi|119861414|gb|AAX17209.1| DNA primase [Borrelia hermsii DAH] Length = 593 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 140/643 (21%), Positives = 252/643 (39%), Gaps = 63/643 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I + + I LIG+ V + Y CPFH EKTPSF S+G Sbjct: 1 MEYAK-VIDLIKQRVDIVGLIGERVRLVKAGA-----SYKGLCPFHAEKTPSFSITPSQG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--T 115 +YCF C GD + FL + + ++V+ L + G+ + K + + Sbjct: 55 LFYCFGCRRGGDVIKFLMDIEKLDYNDAVKSLCSRIGIAYDEIKKTTGFKNKTQDKALIS 114 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKL---GYAPDSRYSLR 170 + L F L N +D + Y L ERGI I +F + + Sbjct: 115 KIYDLNARLVKTFLFFLNNNQDNQGVLNYILKERGISKEVINLFNIGYLRCDVPGKLGFY 174 Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + L KG+S+E + ++GL + RLIFPIR +G V+ FGGR L K Sbjct: 175 DFLVLKGYSDELLSKSGLFAK---QNRRFSILSGRLIFPIRDFKGNVVGFGGRDLGKNNG 231 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KY+NS ET +F K + LY F+ + ++ S +IL EGY+DVLS AG Sbjct: 232 PKYINSSETEVFKKRELLYGFYEGFSVIR----------ESKSVILTEGYIDVLSFFTAG 281 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+ VS+LGT+ + L L+ + + +I+LCFD D GL A +KA + L V+ Sbjct: 282 VKFAVSTLGTSFSREHLALIRRHADKIMLCFDDDAAGLAATFKAYQICLPF---NVDVSV 338 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + G DP ++ G + + +I ++ + L ++ + N + + Sbjct: 339 IRMKYGADPADVLKNKGASVLKNMINDNCEAFEYLLEKYSAKYDLNKTTDLNGMINLFIT 398 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 I+ R + + R+ + +D +R +S Sbjct: 399 LISLSSTNTQRDLLLEKLESRVGIKLETLR----------------KDYYSMRERSAIAS 442 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 K S + + E LL+ L+ + ++D + ++++++ F K Sbjct: 443 YKKNTSSYEINTYERYLLVALLKDFNYFTIIRRNISDSDLYDVDVKRIFVCFEKLFENNK 502 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 F + + L + + ++ +V + + + R Sbjct: 503 GFSLLNLRELLKNK------------HSVSEVFFENMLRVEFEVDDEMVKQILFAIKKRK 550 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630 + + ++ + + L+ + I +++ Sbjct: 551 VENRILVFKEMSRDNFSIDAKAQIRELMFLNMQRENLRIYLNE 593 >gi|257126629|ref|YP_003164743.1| DNA primase [Leptotrichia buccalis C-1013-b] gi|257050568|gb|ACV39752.1| DNA primase [Leptotrichia buccalis C-1013-b] Length = 607 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 152/635 (23%), Positives = 271/635 (42%), Gaps = 51/635 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I+ L+ ++ I +IG+YV+ + + DY PF DEKTPSF + K Sbjct: 1 MFYSEEEIQKLIDNLDIVEVIGEYVNLKKAGS-----DYKGLSPFKDEKTPSFTVSPVKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQ 114 + FS + G+ +SF + F+++V+ L+ +PL KI +K+ Sbjct: 56 IFKDFSTQIGGNVISFYMKINDIGFVQAVEELSQKYNIPLKKSGKSQIVSQKISEKQAEN 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + ++ A FF ++ + + Y+ R ++ FK+G+A R L ++L Sbjct: 116 KEYFEIMNEAQTFFENN--VEKYEEALEYMKNRDFSLEDMKKFKIGFASSIRDGLFQYLI 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 +K FSE KI++ GL + YD FRNR+IFPI + G+++AFGGR + K + KY Sbjct: 174 EKNFSENKIMKLGLAKRN-ENGEIYDSFRNRIIFPIYNIEGKIVAFGGRIIEKNSNLPKY 232 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSP++ +F KG+ L+ + F IL+EGY+DVL+ + G +N Sbjct: 233 LNSPDSPIFKKGRELFGI----------KYQGGNVKKKGFAILMEGYLDVLTAQKNGFEN 282 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGTA TE Q +LL K + +I++ +D D+ G A KA ++ + + VL Sbjct: 283 AVASLGTAFTEEQAQLLKKYTDKILIAYDNDEAGRNAVIKAGYILKKYDFDIKCL--VLK 340 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +DPD F+R GK AF +++ ES + D L ++ D + K + Sbjct: 341 GEEKDPDEFLRKNGKKAFIEVVKESKEIFDFLILEFSKEMDLKDVDNVTKFIRKFKPFFS 400 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ D + Y Q + E + + K Sbjct: 401 NVTDNLRKNLYLQKLSTEFGIDGFILKEELGNLTPEKSPKKPRISSDENTVKF------K 454 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E + + +++ ++L + ++ ++ KL + + + + Sbjct: 455 KLKEDLYIELEKQTFIYFLKCYDSEKQKCEKLLNKKFSSSIFNKLVEDMKTINFDIRKLD 514 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLL 591 +I + + ++ +SA + D+ R+ Y + KR Sbjct: 515 KIDITKE-------------ESEIIMGLQFSADKDIKDKDIYFREIYFGWI---KREIDE 558 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 RQK + E + + IS + E+ Sbjct: 559 ERQKSDEENDKIKKLELKKILLKLKNISKIDEIEK 593 >gi|283953744|ref|ZP_06371275.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp. jejuni 414] gi|283794785|gb|EFC33523.1| LOW QUALITY PROTEIN: DNA primase [Campylobacter jejuni subsp. jejuni 414] Length = 605 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 132/522 (25%), Positives = 239/522 (45%), Gaps = 44/522 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCICPFHADKNPSMHINPAKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC GD F+ SF ++V++ A+++ L ++K++ + +L ++ Sbjct: 57 HCFSCKAGGDAFKFIMDYEKLSFADAVEKAASLSNFTLSYT----KEKQENKKELKSILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K + YL +R ++ I F+LG+A S S+R QK E+ Sbjct: 113 SLNAYFKDNLK--HHKEVLIYLYQRALNDKDIAKFELGFAGASEDSIRLLQNQKIPLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ KY+NSP+ +LF Sbjct: 171 MSVGAL--KKDENNEFYSSFIWRITFPIYDQKDLLVGFGGRTLNPNIPAKYVNSPQNVLF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + K II+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKSRIFYAFNIAKENIAKK----------KEIIVCEGYMDAIAFHKAGFDNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ GL+AA ++ L+ + I G +L G+DP Sbjct: 279 TEHHLPLIRRYEAKVILCFDNDEAGLKAATRSAFLLSTNKIDGK---VAILQGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ + + L + +R S N+ ++ + ++ +++ + Sbjct: 336 VAKNESAKLHDILDKGIELGEFYIRRLISAYSINSALDKQKALETIQKYTFNLE-PLVAN 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + + L+ + I ++ K P Q + S +K + Sbjct: 395 SYTNLVSNLLKVDEKFIIL--------------SQNPKKPIQTPLISQNRYNFHKEKIHI 440 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 E L+ L HP I + Q + + + + L + Sbjct: 441 AELELIAFLKQHPDICSDFKQISDSVCF---KHKILLDKILE 479 >gi|222824479|ref|YP_002576053.1| DNA primase [Campylobacter lari RM2100] gi|222539700|gb|ACM64801.1| DNA primase [Campylobacter lari RM2100] Length = 595 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 143/636 (22%), Positives = 262/636 (41%), Gaps = 69/636 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ LL I ++I YV+ ++ + Y CPFHD+K PS H N KGFY Sbjct: 2 IEQTSIEQLLQKTDIVDIIAHYVEVKKQGS-----SYVCVCPFHDDKNPSMHINSIKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C G+ F+ +F+E+V+++A+ L +K++ + + ++ Sbjct: 57 HCFACKAGGNVFKFVMDYEKLNFVEAVEKVASWNNFSLTYTS----QKQENKKSITHILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + F+ +L +++K YL +RG++ I F+LG+AP S +LR K + + Sbjct: 113 ILNAFYKQNL--SKNKEALTYLYKRGLNDEDIRTFELGFAPSSNETLRLL---KNENISE 167 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 N Y F NR+ F I + +I FGGRTL + KY+NSP++ LF Sbjct: 168 EEALEAGAIKQNENGIYASFINRITFSIYDHKNLLIGFGGRTLDEANMAKYVNSPQSKLF 227 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y A + + K +I+ EGYMD ++ +AG +N V+ LGTAL Sbjct: 228 DKSRIFYALHLAKDEIYKK----------KEMIICEGYMDAIAFHKAGFKNAVAVLGTAL 277 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 E + L+ +L R++LCFD D+ GL AA ++ L+ I G VL+ G+DP Sbjct: 278 GENHIPLIKRLQARVILCFDNDNAGLNAAVRSAHLLSLAKIDGK---VVLIEGGKDPAEL 334 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + + + + + + L + + + N+ + ++ +++ + Sbjct: 335 VASHQEKLLFSTLEKGIELGEFYIRNLITHFDLNSALNKQNALEEVQKYTFNLE-PLIAN 393 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + + L Q + R + + K SK ++ Sbjct: 394 SYINLVANLLGVNIQDIKL-------------------SKNTRKNTNFINPIKQSKINNI 434 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E LL L + + A + L + +EQK F I + Sbjct: 435 SELELLKFLYENNETIGLFKLLSAKEYF-------LHQDITKAILEQKNFEDPNIRELYE 487 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ- 601 L L+ + I + Y L + +Q + Q Sbjct: 488 FENIKN-LSNLEEFLY-----------AICKINLAYFNKLKSLNLKQAFKKQIYNLLNQN 535 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + ++ + ++ ++ L EV +H ++ +E++ Sbjct: 536 LEKIKKSYQNDEVF--LNHLLEVLKSVHFLDDEESL 569 >gi|46446324|ref|YP_007689.1| DNA primase [Candidatus Protochlamydia amoebophila UWE25] gi|46399965|emb|CAF23414.1| putative DNA primase [Candidatus Protochlamydia amoebophila UWE25] Length = 592 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 141/627 (22%), Positives = 246/627 (39%), Gaps = 47/627 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ +++L + + ++ +++ R Y CPFHDEK+PSF Y Sbjct: 4 FNKESLENLRQRVDLVEVLSSHIELKRSGA-----SYKGLCPFHDEKSPSFIVQKGDSHY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + SF ESV+ LA V L +V+ + EKK + L +E Sbjct: 59 HCFGCGAHGDAIQFLMSHQKLSFAESVESLAQRFQVHLELVEDREEKKGVTKAFLKLALE 118 Query: 123 VATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A+ FFH+ L + YL RGID I F++G AP + R+ + KG ++ Sbjct: 119 TASQFFHYCLLYSEEGHEALNYLYNRGIDLDFICHFQVGLAPKTAGIFRKFMHAKGIKDD 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETI 240 ++EAGLL + + F +R++FPI VI F GR + KY+N+PET Sbjct: 179 SLLEAGLL-SVNKDGQVREFFNDRILFPIHHHSQGVIGFSGRKYKEETFGGKYINTPETS 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF K + L+ + + K + I+VEG +D L L Q G V+ GT Sbjct: 238 LFKKSRVLFGLNYSRRRIAKERKA----------IIVEGQIDALRLIQMGFNLTVAGQGT 287 Query: 301 ALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 A E ++ L ++ L D D G A K L G V V L G DP Sbjct: 288 AFGEGHVQELINLGVNQVFLALDSDLAGQEATSKIGHL---FQKEGIEVRIVQLPVGGDP 344 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 DSF+R G AF +L+ S ++ L K +++ + ++P + EL I Sbjct: 345 DSFLREQGPEAFLELLKNSSDYLNFLIKHLSQDLNLDSPAAKNELVQKATKLIREWDHPL 404 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + + ++ + I + + + Sbjct: 405 MVHETLRKLAHLMKV--PEEIIGVGKNHLPNIYIKKSASVGAQTIDPDRILETDLLRWLL 462 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +E +++ L + QK++ +++ Q+ + Sbjct: 463 LLGQEQT---------KLVEIVRTNLVKEDFRVAICQKIYDIYRNNYENQRSCDLLSLAI 513 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + +L L ++ + Q + + + ++ EEI+ Sbjct: 514 DLDDAEGQLVLSDLLQKKVNK-----------EKAEQLLIETVKKILDRNWMHKR-EEIK 561 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHI 626 ++ + + LI E+ Sbjct: 562 IKVQSGHCSDD--EVMELIKQFDELKR 586 >gi|320449788|ref|YP_004201884.1| DNA primase [Thermus scotoductus SA-01] gi|320149957|gb|ADW21335.1| DNA primase [Thermus scotoductus SA-01] Length = 576 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 146/626 (23%), Positives = 265/626 (42%), Gaps = 67/626 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + + + ++ +YV G + CPFH EKTPSF+ ++ KG ++CF C Sbjct: 7 VEAIKRRLSLKEVVSRYVALKPAGR----GRWKGLCPFHQEKTPSFYVDEEKGLFHCFGC 62 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD +F+ + G F+ +++RLA AGV +P +++E L+ +++++ ++ Sbjct: 63 KAGGDLFAFVERIEGLDFMGALERLAEEAGVEIPKAGAPAKRRE-----LLDVLKLSQEY 117 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 F LK + + + YL RG+ +I F LGYAP L HL + G S E+ ++AG Sbjct: 118 FLEGLKASLEAQE--YLQRRGLSPESIARFGLGYAPAKGDGLLTHLSRHGISPEEGLKAG 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +L + D YDRFRNR+ FPI+ G+++AF GR L E+ KYLNSPET LF K + Sbjct: 176 VLAEKDG--RFYDRFRNRITFPIKDHLGRIVAFTGRAL-GEETPKYLNSPETPLFRKREV 232 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 L+ + A L+ I+VEG D ++L Q G V+ LG+ L+E Q Sbjct: 233 LFAYPEAKAKLR-----------QGRAIVVEGLFDAIALHQMGFAEAVAVLGSGLSEEQA 281 Query: 308 RLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS-FIRC 365 RLL + + L FD D+ G RA +++DL L + + + +DP + Sbjct: 282 RLLEMQEVREVYLAFDADEAGQRATLQSLDLSLAR----KFLFYAVRLPSKDPGDLLLLP 337 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 G F+K + E+LP V+ ++ T P+ + ++ L + L Sbjct: 338 EGPALFQKALEEALPEVEFRFQEATRGLDLTRPEHKRKVLEALTPRM-------LSPEPF 390 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + DRL+ L + + R K + + L E Sbjct: 391 DPVADRLKALVVERLGLSLRQLE-------DYLASLKRGRRPPPQPPKAEPKNRVLLLEL 443 Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 ++ L++ P + + + L S + Sbjct: 444 DVMALLLSLPE--ERFAEWVHHTALHVWPPEGSLLSEFLELASREPRRD----------- 490 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 ++L + + + + ++ LA + L R+ ++++++++ Sbjct: 491 YLRQVLSRKEAGGILLERLMLVPSVDEPRFPEILEKTLARLREAYYLERR-AKLKEELSR 549 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQ 630 + ++ + E+ I Sbjct: 550 -------NPSMEILREIQELDQAIEA 568 >gi|257460243|ref|ZP_05625346.1| DNA primase [Campylobacter gracilis RM3268] gi|257442308|gb|EEV17448.1| DNA primase [Campylobacter gracilis RM3268] Length = 708 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 124/570 (21%), Positives = 215/570 (37%), Gaps = 71/570 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I++LL + I +++ +YV R N + CPFHD+ PS + G + Sbjct: 2 IKNESIENLLATVDIVDVVEKYVPLKRSGAN-----FVGVCPFHDDSHPSMSVSSKLGIF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CFSC G+ + F+ SF E+V++LA + L K++++ + + L L Sbjct: 57 HCFSCKAGGNAIKFIQDYEKISFPEAVEKLAGMYNFALQYTGAKVQERSEEKKVLGILNA 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 ++ L YL +RG+ +I F LGYA S ++R L+ + + Sbjct: 117 ----YYQSCLYQNPAA--VKYLHDRGLSDQSIRKFGLGYAGASAQTIR-VLQNEEIPPQD 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + AG + N Y F R+ FPI + +++ FGGRT+ KY+NSP+ LF Sbjct: 170 ALNAGAVKQ--NERGLYASFIERITFPIYNHASKLVGFGGRTI-SDNPAKYVNSPQCALF 226 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K Y F A +I+ EGYMDV+ L QAG+ N V+ LGTAL Sbjct: 227 DKSKIFYAFDLAKKSAIAK----------KTLIITEGYMDVIMLHQAGIDNAVAVLGTAL 276 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T L L+ + +VL FDGD G+ AA K+ L + + ++ G DP Sbjct: 277 TPAHLPLIKRAELNVVLSFDGDAAGINAAIKSARL---LCLNKIDSSVAIIGGGADPADM 333 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 I E++ + + L +R + P ++ +K + L Sbjct: 334 IAAGKVRELEQIYASGMESGEFLIRRIAKKYDLARPVQKEAALNEIKEFTAALG-PVLAE 392 Query: 423 YYSQAIRDRLQQLFQKYITEHSGY------------------------------------ 446 Y + L + G Sbjct: 393 SYQSLVAQILNVSPGSFNLSSGGKNFGAGFEGRNFNESGSFGSRDFGAYGGHNADGRDGA 452 Query: 447 ----GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 A++ + S S+ + L ++ + E ++ +++ + + Sbjct: 453 SGSLNGGNFDRAQNTARYESSAPPAASARLGRTLLRRKEIAELQIIKSMLLDGEMAELGL 512 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYF 532 L + ++ + F Sbjct: 513 GCLERRDFR--MHGDIFEAFLAFSRSGGNF 540 >gi|207743820|ref|YP_002260212.1| dna primase protein (partial protein n terminus) [Ralstonia solanacearum IPO1609] gi|206595220|emb|CAQ62147.1| dna primase protein (partial protein n terminus) [Ralstonia solanacearum IPO1609] Length = 300 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 104/307 (33%), Positives = 155/307 (50%), Gaps = 30/307 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I +++G+YV + N + CPFH+EK+PSF + +K FY Sbjct: 2 IPQPFIDDLLNRVDIVDVVGRYVQLKKGGAN-----FMGLCPFHNEKSPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDL 117 +CF C G + FL G S++E+++ LA AG+ +P +++ L Sbjct: 57 HCFGCGAHGSAIGFLMEFSGLSYVEAIRDLAQSAGMVVPEERGGLPPGARAERQAKTVAL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ A D + L++ YL RG+ F LGYAPD SL Sbjct: 117 GDVMARAGDHYRKQLRS--AANAIQYLKGRGLTGEIAGHFGLGYAPDDWQSLEAVFGAYR 174 Query: 178 FSEEKI--IEAGLLIDGDN-----SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + IEAGL+I+ + YDRFR+R++FPIR+++G VI FGGR L +GE Sbjct: 175 DDAIAVPLIEAGLVIESEKTDADGRHRRYDRFRDRIMFPIRNTKGVVIGFGGRVLGQGEP 234 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LF KG LY F A N ++ ++++VEGYM V++L + Sbjct: 235 -KYLNSPETPLFSKGTELYGLFEARNAIR----------EFGYVLVVEGYMAVVALAHSR 283 Query: 291 VQNVVSS 297 + Sbjct: 284 FAIARAL 290 >gi|260910204|ref|ZP_05916881.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295] gi|260635708|gb|EEX53721.1| DNA primase [Prevotella sp. oral taxon 472 str. F0295] Length = 1303 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 116/449 (25%), Positives = 201/449 (44%), Gaps = 27/449 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI + + I N++ + + + N Y CPFH++ PS + K Sbjct: 2 IDKLFIDKVKSALNIVNVVESFTNLQKAGIN-----YKGICPFHNDSHPSMVVSPVKQTC 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD + F+ L +F E+++ A +A + P + E++ +++ Sbjct: 57 HCFVCGAGGDVIEFVKQHLNLTFPEALRWCANLANIEFPEKEMTSEEEQRYRLRESNFIA 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 IE A F+ L +A D +L +RG + G + ++ Sbjct: 117 IEAAAKFYRDHLSHASD-----FLSKRGYKPTDKAIEAFGVGYAPKGNVVMKQLISAGYS 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPET 239 ++ +I YD F +RL+FP +G ++ F GR + + KY+N+ ET Sbjct: 172 SDRLKDVGIIATSTEGYDYDFFNDRLVFPFYDLQGHIVGFSGRMVTPRENAGKYVNTGET 231 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KGK+L+ + A + K F+ LVEG DVLSL GV+NV++ G Sbjct: 232 ALFTKGKHLFGLYQARKAIGKK----------GFVYLVEGQFDVLSLHAVGVENVIAGSG 281 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q+RL+ + + ++V+ +D D G++AA+K +L L G V V L +G+DP Sbjct: 282 TAFTDEQVRLITRFTQQVVMIYDADPAGIKAAFKNCEL---LLKAGVNVKGVRLPKGKDP 338 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F R EKL+ + L+K+ R N PD ++ + + + +++D Sbjct: 339 DDFARENKAQ-TEKLLKDKTETFPKLFKKLLLPRGENAPDVINDVLNDIASLVANVQDAT 397 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 LR Y + + + + R Sbjct: 398 LRMGYMKELAKDFEMKLDLVDRKVRDLRR 426 >gi|281425079|ref|ZP_06255992.1| DNA primase [Prevotella oris F0302] gi|281400923|gb|EFB31754.1| DNA primase [Prevotella oris F0302] Length = 1324 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 127/463 (27%), Positives = 210/463 (45%), Gaps = 32/463 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI+ + + I N++ + + N Y CPFHD+ TPS + S+ Y Sbjct: 8 IDKIFIEKVKSALNIVNVVESFTHLRKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTY 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD +SF+ L SFIE+++ + +AG+ P P+ E K K + Sbjct: 63 HCFVCGASGDVISFVQNHLNLSFIEALRWCSTLAGLEFPQKQMTPEEEAKYKQKEAQRIA 122 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 IE A FF +L + A+ F +GYAP ++ E + Sbjct: 123 IEAAARFFQKNLLQ---AESFLATRGYALTDKALADFGIGYAPAGNIAITELTK---AGY 176 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + + I G N+ YD+FR+R++FP +G +I F GR ++ + V KY+N+ ET Sbjct: 177 SQELLQEVDIIGCNAGRKYDKFRDRVMFPFYDMQGHIIGFSGRIITPKDGVGKYVNTGET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KGK+++ + A + K F LVEG DV+SL + G++NV+ G Sbjct: 237 PLFTKGKHIFGLYQARKAIGKQ----------GFAYLVEGQFDVMSLHKVGIENVIGGSG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q++LL + + IV+ +D D G++A+ K +L L G +V + L +G DP Sbjct: 287 TAFTDEQIKLLLRFTDYIVMIYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F + G +EKL + P +KR + +E + + + + D Sbjct: 344 DDFAKANGNHTYEKLKELTEPFP-KAFKRMLIPYGCKDENIISECLNSICSLVACVGDAG 402 Query: 420 LRYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458 LR Y ++I ++ + K K Sbjct: 403 LRLEYIKSIAADFKSKIGIIDDKVRNIRIKIKEALPKTKTQSG 445 >gi|303235875|ref|ZP_07322478.1| DNA primase [Prevotella disiens FB035-09AN] gi|302483748|gb|EFL46740.1| DNA primase [Prevotella disiens FB035-09AN] Length = 1307 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 119/466 (25%), Positives = 206/466 (44%), Gaps = 32/466 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++FI+ + + I +++ ++V + N + CPFHD+ +PS + S+ Y Sbjct: 2 IDKNFIEKVKSALNIVDVVEKFVHLQKTGAN-----FKGVCPFHDDHSPSMVVSPSRQTY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD ++F+ L SFIE+++ A AG+ P + E K K + Sbjct: 57 HCFVCGASGDVVAFVQEHLNLSFIEALRWCANQAGIDFPKQEMSKEDEDKYKHKEAQRIA 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 I+ A + SL + +L +RG D + G ++ + K Sbjct: 117 IDAAAKLYQKSL-----PQATTFLSQRGYDISDKSLSDFGVGYAPTGNVAMNTLSKDGYS 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPET 239 I++ + + G+ YDRFR+R++FP +G ++ F GR K KY+N+ ET Sbjct: 172 LDILQ-EVDVIGNYEGKLYDRFRDRVMFPFYDMQGHIVGFSGRIVTPKDNVGKYVNTGET 230 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KGK+++ + A + K F+ LVEG DV+SL + G++NV+ G Sbjct: 231 PLFTKGKHIFGLYQARKAIGKI----------GFVYLVEGQFDVMSLHKVGIENVIGGSG 280 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q++LL + + +V+ +D D+ G++A+ K +L L G +V + L + DP Sbjct: 281 TAFTDDQIKLLLRFTDSVVMIYDSDNAGVKASLKNCEL---LLKAGAKVKCIRLPKDTDP 337 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F + EKL +KR R ++ + I + D Sbjct: 338 DDFAKTNQGKTKEKLKELEESFP-KAFKRMILPRGCKDETIISDTLNSICRLIACVPDAA 396 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 LR Y + + F + R K+ + K +Q Sbjct: 397 LRLEYIKTVA----VDFSTTMGIVDDKVRKMKREIKDTLPKSQTQS 438 >gi|291279868|ref|YP_003496703.1| DNA primase [Deferribacter desulfuricans SSM1] gi|290754570|dbj|BAI80947.1| DNA primase [Deferribacter desulfuricans SSM1] Length = 573 Score = 264 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 148/636 (23%), Positives = 273/636 (42%), Gaps = 67/636 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M I LL I I +LI +YVD + N + CPFH EKTPSF+ ++ K Sbjct: 1 MKISEGSISLLLDQINIVDLISEYVDLKKTGKN-----HRGLCPFHTEKTPSFYVSEEKS 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C G+ +SF+ G F+++V L+ + + + + KI DL Sbjct: 56 VFHCFGCGASGNAISFVMKYFGYDFVDAVNFLSEKYNISIEISESD----RKISLDLYEF 111 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + ++L + + +L R ++ I F +GY + K + + Sbjct: 112 HKDIMIAAKNNLITCKKNEVLEFLARRDLNDDLINEFDIGYLD---SLDKLSSILKKYDK 168 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + +GL + D + + +NRL+FPI++ R +V+ F GR + KY+NSPET Sbjct: 169 DIVKSSGLFYEQDGFFSF--KLKNRLLFPIKNLREKVVGFSGRV-TDDSLPKYINSPETQ 225 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K K LYN +L + +VEGYMDV+ + Q G++NVVS +GT Sbjct: 226 IFSKRKILYNLDKTKKHL---------SGEVKVLYVVEGYMDVIRMWQYGIKNVVSPMGT 276 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTE + LL + + +VL FDGD+ G AA +++D+ L V L++GEDPD Sbjct: 277 ALTEDHVSLLKRYADEVVLLFDGDEAGKNAAMRSLDV---FLKNSFIPFVVFLNKGEDPD 333 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SF++ +GK F K++ L +++ KR + N + + L++ + IKD+ L Sbjct: 334 SFLQKFGKEKFLKILDNKYDLFELIIKRMFKKSINNVN-LKTKYLKILQSKLVLIKDELL 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + I Q + ++K +K Sbjct: 393 KESYIEKISKIFGIDPQIFKKGVDFS--------------------TAKRILKRSENKIK 432 Query: 481 SLREAALLLTLI-NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E + +L ++ E ++ + + + ++K++ + K + Sbjct: 433 YICEYDFISSLFGLAEDVIDELVHDMKEEFFFDENMKKIFKKIVEFL--NKNVSIHLLVD 490 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + GELL ++ + D ++ + +++++ E Sbjct: 491 ---DSEVGELLSEI-----------LLKDEFHDDYYNALLNKYKIHLNYLKKLKKEKQEE 536 Query: 600 KQIAQVTAKGEA--EKTAILISILHEVHIQIHQIES 633 + AQ + A + +I + ++ +++S Sbjct: 537 LKKAQDKPERMALVNEINQIIKKQKDFEKRLLEVQS 572 >gi|16752090|ref|NP_445456.1| DNA primase [Chlamydophila pneumoniae AR39] gi|7189832|gb|AAF38704.1| DNA primase, putative [Chlamydophila pneumoniae AR39] Length = 594 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 141/626 (22%), Positives = 250/626 (39%), Gaps = 57/626 (9%) Query: 1 MN---YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M Y + + +L I I +++ +++ R Y ACCPFH EKTPSF N Sbjct: 1 MRTAMYTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNP 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQT 115 + Y+CF C GD + FL LG SF E++ L+ V L D + ++ Sbjct: 56 AGAHYHCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKE 115 Query: 116 DLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +L + A FF + L + + YL RG I+ F LGY P+ L+ Sbjct: 116 ELRHINSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEE 175 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKY 233 +K E+ A R+IFP+ + G I F R L + KY Sbjct: 176 RKISQEQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKY 228 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +N+PET +F K + L+ + + K + +ILVEG D L + +G Sbjct: 229 VNTPETPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNC 278 Query: 294 VVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V++ GTA TE ++ L ++ L FD D+ G +AA + DL V Sbjct: 279 TVAAQGTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCK 335 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L +G DPDSF+ G + L+ +S + L + + P E+A L I Sbjct: 336 LPQGHDPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQI 395 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 H L Y + + + + ++ + +N + Sbjct: 396 KHWGSPILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNIPIKQ-------------- 441 Query: 473 KGKLSKKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE- 528 K + E +L ++ ++ IL + + E +KL++F+ S + + Sbjct: 442 KVPKIHPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKY 501 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 +K +E Q L + +LL + R++ L + ++ + +++ + Sbjct: 502 RKNVPFDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KP 555 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKT 614 L++ ++ + +I + + ++T Sbjct: 556 LSLNQNIQDKKLEILEDYVQLRKDRT 581 >gi|50085933|ref|YP_047443.1| DNA primase [Acinetobacter sp. ADP1] gi|49531909|emb|CAG69621.1| DNA primase [Acinetobacter sp. ADP1] Length = 629 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 149/686 (21%), Positives = 267/686 (38%), Gaps = 119/686 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L + LIGQ V + Y CCPFH EK+PSFH KG Sbjct: 1 MAIPQHTIDQILDRTDLVELIGQRVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116 +Y+CF C G+ + FL + G +FI+ +Q L++ +GV LP + + +K + Sbjct: 56 YYHCFGCQANGNAIRFLMDIDGRNFIDVMQELSSKSGVELPKDNFEQKKLSYKRNTQKPE 115 Query: 117 -----------------LIRLIE-----VATDFF---HHSLKNARDKRLHYYLDERGIDS 151 + E A +F + + D Sbjct: 116 PKPVVNTEKSAPSHHAAISESSEQIDGLQAPSYFDDPFAQFDQSYMGFEDAPQEGNLYDL 175 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS------------- 198 + +++ +Q+G S E I L ++ Sbjct: 176 LENVAQFYEKQLPNSNKAQQYFKQRGLSAETIQFWRLGYAPEDWQHLEKAFPYDIEGLKQ 235 Query: 199 ------------YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 +D R R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + Sbjct: 236 VGLIRSSDSGRDFDLLRERVIFPIRDHKGRVVGFGGRALNDEIKPKYINSPDSEIFHKNQ 295 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY + K ++VEGYMDV++L Q GV V++LGTA Sbjct: 296 LLYGLYEGRKLKAK------------DWLMVEGYMDVIALQQYGVYGAVATLGTASNADH 343 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L L+K + RI + FDGD G +AA + +++ L L G + F +L + DPDS IR Sbjct: 344 LNTLFKQNSRITIAFDGDAAGQKAARRTLEIALPSLNDGRELKFFVLPKEHDPDSLIRRE 403 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYS 425 G F++L+ ++ L D ++ T+ +TP+ ++++ L+ + RY + Sbjct: 404 GLEHFQRLLEQAPLLSDFIFAHLTQQHDISTPEGKSQVMGELRELTELLPKQGSFRYLLT 463 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 Q+ R++L G GR W H + + E Sbjct: 464 QSFREKL------------GLGRKWTPQISHDASLSFNIQTKD---------------ED 496 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIHQRLCE 543 + L+ HP + ++ L + + Q+L + + + + +E+ Sbjct: 497 FAVALLMQHPYLYI-HFEALRA--FIDP--QQLLAQILAIIDRVFDELPDDQELATYYVL 551 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + ++ + + + D + + L +++ + +++ Sbjct: 552 GACNQFSHEIADIIERTDIQTLMNAPETAD----------KHAKEYALGLKEKYLRQKLK 601 Query: 604 QVTAKGEAEKTAILISILHEVHIQIH 629 + ++ L L+E+ QI+ Sbjct: 602 APISL---IESRNLRQQLNELSKQIN 624 >gi|160902265|ref|YP_001567846.1| DNA primase [Petrotoga mobilis SJ95] gi|160359909|gb|ABX31523.1| DNA primase [Petrotoga mobilis SJ95] Length = 579 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 127/627 (20%), Positives = 263/627 (41%), Gaps = 61/627 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + I ++ + I + + Y+ +R N Y A CPFH E TPSF+ ++C Sbjct: 9 KKVIDEIKNKVDIVDFVNSYLSLSKRGKN-----YTALCPFHAEDTPSFYIFPETQTFHC 63 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD ++FL SF+++++++A AG+ L + +KEK + E Sbjct: 64 FGCGAHGDVITFLEKYEQISFLDALKKIATYAGIELDIT-----QKEKPVEIIF--NEEV 116 Query: 125 TDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 + ++++L N + + ++ YL +R I +E F+LG+A S +++ + + F ++ Sbjct: 117 SKLYNYNLLNLSSNHKVWQYLKKREITRELVEEFELGFATGS--EIQKVIEENLFDKDIA 174 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242 GLLI+G+ + F NRLI PIR++ G+++ F GR + + + KYLN+PE F Sbjct: 175 KNTGLLINGEK-----EFFYNRLIIPIRNNDGELVGFAGRQIEEDTNAPKYLNTPENKFF 229 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K LY + +++ + F+ILVEGY DV+S+ + +NVV LG+A Sbjct: 230 KKSKILYGYHKNKKFIK----------ENDFVILVEGYFDVISMYKLDFKNVVGILGSAF 279 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T+ L K + +++ +D D+ G +A ID + V +DPD Sbjct: 280 TKDHAVELLKATNKVITMYDMDESGQKATLSTIDALFAKD----FQIAVSKYPTKDPDEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + + +++ S + + +E + + + +D R Sbjct: 336 TKKHDNKYIAEILKNSYKFHEFIVDYYSEKYDLSNEFALEKYLKEMSRWYKKFED-VGRI 394 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y Q+ + + + K S + +L K + Sbjct: 395 SYLQSFIENISKKTGKGTEYIQKILERTSALIPVSSASNESNSQTKDTLYVEKDIRYDIA 454 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + + L I +P + ++ + + L++ ++ + + + Sbjct: 455 K--SYLYLWIKYPHYREILKNYFSEEDFSSQLLKEFFTL------TSQSSDIGFLLEN-S 505 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + EL+ ++ W N + ++++ R ++ Q EE++K++ Sbjct: 506 SKELSELIVEV---------WKIEYFFNPERILSSLKESI----RRTKINEQIEELKKKL 552 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 + + + + S + +++ ++ Sbjct: 553 HETK---DLSEKTNITSQIIQLYSKLK 576 >gi|15618851|ref|NP_225137.1| DNA primase [Chlamydophila pneumoniae CWL029] gi|15836475|ref|NP_300999.1| DNA primase [Chlamydophila pneumoniae J138] gi|33242308|ref|NP_877249.1| DNA primase [Chlamydophila pneumoniae TW-183] gi|9910843|sp|Q9Z6W4|PRIM_CHLPN RecName: Full=DNA primase gi|4377266|gb|AAD19080.1| DNA Primase [Chlamydophila pneumoniae CWL029] gi|8979316|dbj|BAA99150.1| DNA primase [Chlamydophila pneumoniae J138] gi|33236819|gb|AAP98906.1| DNA primase [Chlamydophila pneumoniae TW-183] Length = 590 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 140/621 (22%), Positives = 249/621 (40%), Gaps = 54/621 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I +++ +++ R Y ACCPFH EKTPSF N + Y Sbjct: 2 YTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNPAGAHY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CF C GD + FL LG SF E++ L+ V L D + ++ +L + Sbjct: 57 HCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKEELRHI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL RG I+ F LGY P+ L+ +K Sbjct: 117 NSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEERKISQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 E+ A R+IFP+ + G I F R L + KY+N+PE Sbjct: 177 EQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + L+ + + K + +ILVEG D L + +G V++ Sbjct: 230 TPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNCTVAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA TE ++ L ++ L FD D+ G +AA + DL V L +G Sbjct: 280 GTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCKLPQGH 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G + L+ +S + L + + P E+A L I H Sbjct: 337 DPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQIKHWGS 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L Y + + + + ++ + +N + K Sbjct: 397 PILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNIPIKQ--------------KVPKI 442 Query: 478 KKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFL 533 + E +L ++ ++ IL + + E +KL++F+ S + + +K Sbjct: 443 HPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKYRKNVP 502 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +E Q L + +LL + R++ L + ++ + +++ + L++ Sbjct: 503 FDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KPLSLNQ 556 Query: 594 QKEEIEKQIAQVTAKGEAEKT 614 ++ + +I + + ++T Sbjct: 557 NIQDKKLEILEDYVQLRKDRT 577 >gi|89897993|ref|YP_515103.1| DNA primase [Chlamydophila felis Fe/C-56] gi|89331365|dbj|BAE80958.1| DNA primase [Chlamydophila felis Fe/C-56] Length = 596 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 136/584 (23%), Positives = 241/584 (41%), Gaps = 41/584 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L +I I ++ +++ R Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEESLDNLRHNIDIVEVLSEHLHLKRSGA-----TYKACCPFHVEKTPSFIVNPTCAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 +CF C GD +SFL LG SF E+V L+ V L V D + + +L ++ Sbjct: 57 HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVVEVKDTQTSFPIGAKDELRQI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A + F L A + YL RG I+ F LGYAP+ ++ + Sbjct: 117 NHEAENLFRFCLYQLAEGREALQYLYRRGFSPDTIDRFHLGYAPEQTLFVQAMREKNISE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 ++ + + R+IFP+ S G I F R L KY+N+PE Sbjct: 177 KQLESAGFIGNKWFLFSR-------RIIFPVHDSLGHTIGFSSRKFLENTRGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K + L+ + + K R +ILVEG D L + +G +++ Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQADCLQMIDSGFNCTLAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE ++ L + + FDGDD G++AA + D+ G V L +GE Sbjct: 280 GTSFTEDHVKELSKLGVLKAYVLFDGDDAGIKAAIRVGDMCQ---TVGIAVMVCRLPQGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+R G +L+ +S + L + +P E+A + I + Sbjct: 337 DPDSFLRHKGAGPLGELLDQSEDYLTFLISEKIRVYPNFSPREKALVIEETITQIKKWGN 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + + + L + + + + K ++ +++ + Sbjct: 397 PIVVYEHLKQLAS-LMMIPESMVFSLAKLESGITPATVLATSKAKLPKIHPDVIIETDVL 455 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EE 536 +L ++ ++ + + E +KL+S L + + + LP +E Sbjct: 456 -------RCMLFCKAHNTSLPYTAKNYFTPKDFKHPECRKLFSRLIEYYEKHQSNLPFDE 508 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 L ++ ELL + R++ L + ++ + +++ Sbjct: 509 ALSLLEDKVIIELL--IKRRMNTDCLETVFIQSLQKLADRQWKE 550 >gi|119953488|ref|YP_945697.1| DNA primase [Borrelia turicatae 91E135] gi|119862259|gb|AAX18027.1| DNA primase [Borrelia turicatae 91E135] Length = 591 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 129/639 (20%), Positives = 249/639 (38%), Gaps = 57/639 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I + + I LI + V + + Y CPFH E+TPSF ++G Sbjct: 1 MEYAK-VIDLIKQRVDIVALISERVRLVKSGS-----SYKGLCPFHAERTPSFSITPAQG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--T 115 +YCF C GD + FL + + +V+ L + G+ + K + + Sbjct: 55 LFYCFGCRKGGDVIKFLMDIEKLDYNGAVKSLCSRIGIVYDDIKKTTVVKNKTQDKSIIS 114 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173 + L F L N + + + L + +++ L Sbjct: 115 KIYDLNAKLIKTFEFFLNNNQKVLNYILQMRGISKDVIDLFNIGYLRFDIPGKFNFYNFL 174 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 KG+S+E + ++GL + RLIFPIR +G V+ FGGR L + KY Sbjct: 175 ISKGYSDEILSKSGLFSK---RKGIFSILSGRLIFPIRDFKGNVVGFGGRYLGRNNGPKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +N ET +F K + LY F+ + ++ S +IL EGY+DVLS AGV+ Sbjct: 232 INLSETEVFKKRELLYGFYEGFSVIK----------ESKSVILTEGYIDVLSFFTAGVKI 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VS+LGT+ + L+ + + +I++CFD D GL A +KA + L V+ + + Sbjct: 282 AVSTLGTSFSREHFALIKRYANKIIMCFDDDAAGLLATFKAYQICLPF---DIDVSVIRM 338 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP ++ G + +I + + L ++ + + + + N I+ Sbjct: 339 KYGVDPADVLKNKGAFVLKDMINDGCDAFEYLLEKYSGKYDLSKTTDLNSMVGMFINLIS 398 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R + + ++ + ++ +R +S + Sbjct: 399 LSSTNTQRDLLLKKLESKMGIKLETLREDYYSMR----------------ERSAIASYKR 442 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 S + + E LL+ L+ + ++D + +++K++ F + F Sbjct: 443 NAYSYEINTYERYLLVALLKDFNYFTIIRRNISDSDLYDVDVKKIFMCFEYLFENNESFS 502 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L + + +V + E + +Q L K+ ++ +R Sbjct: 503 LLNLKELLKDNKYS------VSEVFFENMLRVEFEVDDE----MVKQILFAIKKRKVENR 552 Query: 594 QK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +++ K + AK + + L + I +++ Sbjct: 553 ILVFKDMSKDNVSIDAKAQIRELMFLNMQRENLRIYLNE 591 >gi|118577332|ref|YP_899572.1| DNA primase [Pelobacter propionicus DSM 2379] gi|118504837|gb|ABL01319.1| DNA primase [Pelobacter propionicus DSM 2379] Length = 471 Score = 262 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 129/491 (26%), Positives = 212/491 (43%), Gaps = 33/491 (6%) Query: 1 MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M P D K++L I LIG+ + + T Y ACCPFH+EKTPSF N S Sbjct: 1 MRIPDDIKKEILDRAGQNIVQLIGEVIPLTKAGT-----TYKACCPFHNEKTPSFTVNPS 55 Query: 59 KGFYYCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 +G ++CF C+ GD F G F +++ LA G+ +P + K+EK + + Sbjct: 56 RGTWHCFGQCNDGGDVAKFFMLRDGIKFPDALALLARRVGITIPQGET---KEEKERKAM 112 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + + A FF L R+ Y D R +GYAP +L ++L + G Sbjct: 113 LHALAKAQYFFQQGLSENRNG-GRAYADSRLTPYEVE-RHGIGYAPKGGRALVDYLDKSG 170 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +AGL I + + D F R++FPIR RG+VIAF GR K +++KY+NSP Sbjct: 171 VPFWAAEKAGL-IRREENGPYKDCFWGRVMFPIRDDRGRVIAFAGRRTDKIKTLKYVNSP 229 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E+ L+ K LY A+ + + + +VEGY D +++ AG+ N V++ Sbjct: 230 ESPLYKKEATLYGIDTAIQAI----------QETGEVYVVEGYFDAIAMISAGILNTVAT 279 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA T+ +L + R+ FDGD G +A KA L L V LL+ + Sbjct: 280 CGTAFTKEHAAVLRRYCTRVNFMFDGDAAGKKALQKATLLAL---KEEFTVTAYLLTEDQ 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF + + + L + + ++ + + ++ I ++ Sbjct: 337 DPDSFFKSGESFNEIRSMTGLDYLKESGAEMSPIHKKLHRLERLERGLFYMAEKIPEVRG 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + + + R Q+ + + ++ + Sbjct: 397 MIAKSGNLEEL------FSPDLLPAIHDVINTPPPPFSPRVQRMIETLVRVKASLELGNT 450 Query: 478 KKPSLREAALL 488 +P++R A LL Sbjct: 451 AEPTVRSAMLL 461 >gi|149927881|ref|ZP_01916131.1| DNA primase [Limnobacter sp. MED105] gi|149823320|gb|EDM82553.1| DNA primase [Limnobacter sp. MED105] Length = 282 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 90/268 (33%), Positives = 136/268 (50%), Gaps = 12/268 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL + I++++G+YV N CPFH+EK+PSF + SK FY Sbjct: 2 IPQSFIDDLLYRLDIADVVGRYVQLKAAGANLQ-----GLCPFHNEKSPSFTVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI--EKKEKIQTDLIRL 120 +CF C G+ + F+ LG +F E+V+ LA G+ +P + + +L+ L Sbjct: 57 HCFGCGAHGNAVGFVMEHLGLTFPEAVENLAGNLGIDVPYEKGMDVPAEVRSEREELVEL 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A +++ LK + YL RG+ + +GYAPD+ +L + + Sbjct: 117 LTRAANYYKAQLKKS--PVAIDYLKNRGLTGQVAARYGMGYAPDAYQNLESVIENYASNT 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + I +S YD FR R++FPIR+++GQVI FGGR L E KYLNSPET Sbjct: 175 QLDLAGLTKIS--DSNRRYDAFRGRIMFPIRNAKGQVIGFGGRVL-GDEKPKYLNSPETP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRR 268 +F KG +Y F A + K V Sbjct: 232 VFSKGHEVYGLFEARQAIHKMGYALVTE 259 >gi|269302732|gb|ACZ32832.1| DNA primase [Chlamydophila pneumoniae LPCoLN] Length = 590 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 140/621 (22%), Positives = 249/621 (40%), Gaps = 54/621 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I +++ +++ R Y ACCPFH EKTPSF N + Y Sbjct: 2 YTEESLDNLRHSIDIVDVLSEHIHLKRSGA-----TYKACCPFHTEKTPSFIVNPAGAHY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CF C GD + FL LG SF E++ L+ V L D + ++ +L + Sbjct: 57 HCFGCGAHGDAIGFLMQHLGYSFTEAILVLSKKFQVDLVLQPKDSGYTPPQGLKEELRHI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A FF + L + + YL RG I+ F LGY P+ L+ +K Sbjct: 117 NSEAETFFRYCLYHLPEARHALQYLYHRGFSPDTIDRFHLGYGPEQSLFLQAMEERKISQ 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 E+ A R+IFP+ + G I F R L + KY+N+PE Sbjct: 177 EQLHTAGFFGNKWFLFAR-------RIIFPVHDALGHTIGFSARKFLENSQGGKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F K + L+ + + K + +ILVEG D L + +G V++ Sbjct: 230 TPIFKKSRILFGLNFSRRRIAKEKK----------VILVEGQADCLQMIDSGFNCTVAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA TE ++ L ++ L FD D+ G +AA + DL V L +G Sbjct: 280 GTAFTEEHVKELSKLGVLKVFLLFDSDEAGNKAALRVGDLCQTAQ---MSVFVCKLPQGH 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G + L+ +S + L + + P E+A L I H Sbjct: 337 DPDSFLMQRGSSGLIALLEQSQDYLTFLISEKMSSYPKFGPREKALLVEEAIRQIKHWGS 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L Y + + + + ++ + +N + K Sbjct: 397 PILVYEHLKQLASLMMVPEDMVLSLANPQVTAEPQNILIKQ--------------KVPKI 442 Query: 478 KKPSLREAALLLTLI---NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFL 533 + E +L ++ ++ IL + + E +KL++F+ S + + +K Sbjct: 443 HPHIVMETDILRCMLFCGSNTKILYTAQFYFVPEDFKHPECRKLFAFMISYYEKYRKNVP 502 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 +E Q L + +LL + R++ L + ++ + +++ + L++ Sbjct: 503 FDEACQVLSDSQILQLLTK--RRLNTEALDTIFVQSLQKMADRRWREQC----KPLSLNQ 556 Query: 594 QKEEIEKQIAQVTAKGEAEKT 614 ++ + +I + + ++T Sbjct: 557 NIQDKKLEILEDYVQLRKDRT 577 >gi|62185402|ref|YP_220187.1| DNA primase [Chlamydophila abortus S26/3] gi|62148469|emb|CAH64239.1| putative DNA primase [Chlamydophila abortus S26/3] Length = 591 Score = 260 bits (664), Expect = 5e-67, Method: Composition-based stats. Identities = 141/609 (23%), Positives = 246/609 (40%), Gaps = 55/609 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I ++ +++ R G Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEESLDNLRHSIDIIEVLSEHLHLKRSG-----GTYKACCPFHVEKTPSFIVNPTGAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CF C GD +SFL LG SF E+V L+ V + + D + + +L ++ Sbjct: 57 HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLVIKMKDVQSPFATGAKDELRQI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F L A + YL RG + F LGYAP+ + + Sbjct: 117 NAEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTVGCFHLGYAPEQTLFVHAMREKNISE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 ++ + + R+IFPI S G I F R L KY+N+PE Sbjct: 177 KQLEDAGFIGNKWFLFSR-------RIIFPIHDSLGHTIGFSSRKFLENTRGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K + L+ + + K R +ILVEG +D L + +G +++ Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQVDCLQMIDSGFNCTLAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE ++ L + L FDGDD G++AA + D+ G L +GE Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGIKAAVRVGDMCQM---AGIAAMVCRLPQGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ +S + L ++ +P E+A + I + Sbjct: 337 DPDSFLMHKGARPLGELLDQSEDYLTFLISQKMRVYPNFSPREKALVIEETITQIKKWGN 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + Y + + + L + + + + K ++ ++ Sbjct: 397 PIVVYEHLKQLAS-LMMIPESMVFSLAKLESGMTPAKSSLVNKEKLPKIHSDVII----- 450 Query: 478 KKPSLREAALLLTLINHPA----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E +L ++ I + + + E +KL+S L + + + + L Sbjct: 451 ------ETDVLRCMLFCKTHQTCIPHTAKHYFTAMDFKHPECRKLFSHLIAYYEKHQSNL 504 Query: 534 P-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 P +E L +R ELL + R++ L + ++ + +++ + LS Sbjct: 505 PFDEALSLLEDRVIIELL--IKRRMNTDCLETVFVQSLQKLADRQWKE------QCHPLS 556 Query: 593 RQKEEIEKQ 601 RQ + ++ Sbjct: 557 RQSKSAHEE 565 >gi|325268617|ref|ZP_08135247.1| hypothetical protein HMPREF9141_0456 [Prevotella multiformis DSM 16608] gi|324989145|gb|EGC21098.1| hypothetical protein HMPREF9141_0456 [Prevotella multiformis DSM 16608] Length = 1324 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 127/461 (27%), Positives = 212/461 (45%), Gaps = 28/461 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++FI+ + + I N+I + + N Y CPFHD+ +PS + S+ Y+ Sbjct: 3 DKNFIEKVKSALNIVNVIETFTHLHKTGAN-----YKGVCPFHDDHSPSMVVSPSRQTYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121 CF C GD +SF+ L SF+E+++ A AG+ P + P+ E K + I Sbjct: 58 CFVCGASGDVISFVQHHLNLSFMEALRWCAVQAGIEFPAKELSPEEEAAYKKKEAQRIAI 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + A FF +L + A+ F +GYAP +L E + Sbjct: 118 DAAAKFFQKNLAQ---AESFLASRGYSLSDKALTDFGVGYAPMGNLALSELSK---AGYS 171 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + + + + G++ YDRFR+RL+FP +G VI F GR ++ E KY+N+ ET Sbjct: 172 QELLQEVDVLGNSEGRLYDRFRDRLMFPFYDMQGHVIGFSGRIVTPRERTGKYVNTGETP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KGK+++ + A + K F LVEG DV+SL + GV+NVV GT Sbjct: 232 LFTKGKHIFGLYQARKSIGK----------EGFAYLVEGQFDVMSLHKVGVENVVGGSGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T+ Q++LL + + IV+ +D D G++A+ K +L L G +V + L +G DPD Sbjct: 282 AFTDDQVKLLLRFTDDIVMIYDADAAGIKASLKNCEL---LLKAGAKVRCIRLEKGMDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F + G +KL + P +KR R + + + + ++D L Sbjct: 339 EFAKANGSLTAKKLKGLTEPFP-KAFKRMLLPRGCKDETVITDCLNSICSLVACVQDSVL 397 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 R Y ++I + + + K+++ + + Sbjct: 398 RLEYVKSIAEDFRSRIGIIDNKVRSIRTRLKESSVQTNTQT 438 >gi|39939113|ref|NP_950879.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722222|dbj|BAD04712.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 604 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 137/637 (21%), Positives = 261/637 (40%), Gaps = 45/637 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I + +PI +L+ ++V + N Y CPFHDEKTPSF + + Sbjct: 1 MQDNKQLIDQINEKMPILDLVQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPERN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 C SC G+ + F ++ +++ LA G+ ++ + Sbjct: 56 IGVCMSCKKGGNPVFFYKSIKNIPLNQAIFELATRLGIA----TSLPQQGTHQYQKFYNI 111 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ A DF+ H LK +K++ YL++RG D+ I+ FKLGYAP + + R + F Sbjct: 112 MQEAADFYSHQLK--HNKQVLNYLEKRGFDNDIIKHFKLGYAPKASHLSRYLMEGTKFDP 169 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + L+ D + YD F+NRLIFPI + GQ++AF R+L + KYLNSPETI Sbjct: 170 DDLKKLSLINQDDKTGNFYDFFKNRLIFPITNKSGQIVAFSSRSL-DDQMPKYLNSPETI 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG+ LY ++ ++K + +IL EG+ DV++ +A +NVV+++GT Sbjct: 229 IFKKGETLYQYYETQAEIRKKQK----------VILHEGFFDVMASFKAQFKNVVATMGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 LT +LL K++ +I++ +DGD G A +++ +V V DPD Sbjct: 279 NLTLDHAKLLKKITDKIIIAYDGDKAGKTAT---LEIGTFLQKNHFKVQIVDFPNNLDPD 335 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ G ++ L+ + + + + ++ Sbjct: 336 EYIKTEGPEKYQHLL---TDNLKDFLALKVDLICQQMDSYNKAQTKKELQELFQSSSFEI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + + + QL ++ S H Q+ + + +L Sbjct: 393 KMLYQEYL-QKTYQLTVNLNSQVSINKAPKPPYIAHTKQQLNLTKFDIKIEIIIELLLN- 450 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537 A T +P + +D+ + L +++ + + + EEI Sbjct: 451 ----ADFFKT--QNPKTFATIKKTPG---FDDLQCSCLLNYIKNYYKKNPKQTCIPWEEI 501 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + +LL +++ + + Y + L + + ++ E Sbjct: 502 KNTTFKENIDDLLTSIEKHHFFKMEKRPLLQDKEGKIFNNYIKELEIRDKIEQKQQKINE 561 Query: 598 IEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + I +K L ++ Q+ ++ Sbjct: 562 LNDKLLPIDNTEKNKLQKKKDKLKKERRQLQKQLSEL 598 >gi|325272672|ref|ZP_08139026.1| DNA primase [Pseudomonas sp. TJI-51] gi|324102183|gb|EGB99675.1| DNA primase [Pseudomonas sp. TJI-51] Length = 427 Score = 259 bits (662), Expect = 8e-67, Method: Composition-based stats. Identities = 120/424 (28%), Positives = 198/424 (46%), Gaps = 26/424 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y +F+ + + LI + + + N + ACCPFH EKTPSF + + F Sbjct: 6 RYSDEFLDRVRQAADLVGLISRDITLKKSGKN-----FSACCPFHKEKTPSFSVSPERNF 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---I 118 Y C+ C KGD ++++ F ++V +A +G+ LP + +L Sbjct: 61 YRCYGCDAKGDAITWMMDHHHLPFPDAVAAVAEFSGIQLPEPCQDTAADQARNAELAAMY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 R ++ A + ++ K Y +RG+ S I + LG L K Sbjct: 121 RALKDAQTLYAGGIQRN-AKSYGYLTQQRGLSSETIGKYGLGTVGTG----IADLLLKRH 175 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236 + +I+ GL + +DRFR+R++ PI G ++ F GR++ S + KY+NS Sbjct: 176 DRQILIDCGL-VCEAEDGRLFDRFRSRIMIPIHDHGGALVGFAGRSVIESPDRTPKYINS 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LFHKG+ LY F A +++ + ++VEG+ DVLSL QAG V+ Sbjct: 235 PETKLFHKGEELYAFNIARQFIR----------ADRHAVVVEGFFDVLSLHQAGDSRAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +GT+LT Q+R L++ + + FDGD G +AA ++ +VL + G F+ L G Sbjct: 285 PMGTSLTNVQMRRLFQNADTVTFAFDGDKAGRKAALRSSAVVLEEMCDGKNAQFLFLPEG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS +R G + +++ ++ PL L P+ + + + I I+ Sbjct: 345 TDPDSVLRENGLEYWIEMLNQAQPLSRFLTDFVKHRLDIEIPESQVKAAERGRAVIARIR 404 Query: 417 DQKL 420 D L Sbjct: 405 DAAL 408 >gi|134287889|ref|YP_001110054.1| DNA primase [Burkholderia vietnamiensis G4] gi|134132539|gb|ABO60522.1| DNA primase [Burkholderia vietnamiensis G4] Length = 426 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 127/424 (29%), Positives = 202/424 (47%), Gaps = 26/424 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +F++ + + LI + V R D+ ACCPFH+EKTPSF + K Sbjct: 6 RFSDEFLERIRGETDLPALIERDVKLKRAG-----QDFVACCPFHEEKTPSFRVSADKNT 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 Y C+ C +GD + ++ SF ++V LA ++G+PLPV + ++ + + L Sbjct: 61 YRCWGCGARGDAIEWMRNKHHLSFQDAVVHLAGVSGIPLPVEERDSDEDKAQRKRLAGLY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++ A F L + R Y +RG+ + IE F LG L + Sbjct: 121 QALKEAARVFSRGLAKSPAARA-YLEQKRGLSAETIERFGLGVVAKGVVELLGGSTSREA 179 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236 + A + YDRFR+R++FPI + G ++ F GR++ ++ KY+N Sbjct: 180 LLGSGLAAQ-----RDDGEIYDRFRHRIMFPIHNESGNLVGFAGRSMIEKPDKTPKYVNC 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG+ LY A ++ S ++VEGY DV+SL QAG + V+ Sbjct: 235 PETEIFHKGRELYALHLAKPAIR----------SGRVAVIVEGYFDVISLHQAGDERAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +GTALT Q+R L + IV FDGD G +AA A ++L + G F+ L G Sbjct: 285 PMGTALTNLQVRRLLVHADTIVFAFDGDAAGRKAALGAAAVLLDEMKDGKTARFLFLPEG 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R +G A+ ++ PL L + P+ + + K + I+ Sbjct: 345 EDPDSFVRAHGLEAWHAATEQAAPLSAFLADYVAHGLDRDVPESQVKAAEKAKAILARIQ 404 Query: 417 DQKL 420 +L Sbjct: 405 HAEL 408 >gi|150020922|ref|YP_001306276.1| DNA primase [Thermosipho melanesiensis BI429] gi|149793443|gb|ABR30891.1| DNA primase [Thermosipho melanesiensis BI429] Length = 530 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 146/608 (24%), Positives = 253/608 (41%), Gaps = 96/608 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +P+ I+++ I I + +YV + N Y CPFH E TPSF+ N S Y Sbjct: 2 FPKQVIEEIKSKIDIVEFVSRYVSLQKVGNN-----YRGLCPFHTETTPSFYVNPSFKTY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL + SF E+V++LA G+ + K Q RL E Sbjct: 57 HCFGCGASGDVIKFLEEIENISFSEAVKKLAKEVGIKV------DVKVSSFQQLYYRLYE 110 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + + L+ YL +R + I ++ G++P + ++ Sbjct: 111 LIHEEYKKHLQKN--SIAVEYLQKRSFTAEEILKYEFGFSPLNS----------KIPQKV 158 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 G+ I ++ D F RLI PI+ G++IAFGGR L +G+ KYLNS ET F Sbjct: 159 AENLGIKILKKFGFSTKDLFEGRLIIPIKDENGRIIAFGGRLLGEGQP-KYLNSFETDFF 217 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K K L+ A + ++ + F I+ EGY D L+ +A + N V++LGTA Sbjct: 218 KKSKTLFLLDRAKDQIK----------IADFAIICEGYFDALAFHRADITNAVATLGTAF 267 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T++ L K++ +VL FD D GL+AA ++I + ++ G V S +DPD Sbjct: 268 TKFHAFKLKKITSNVVLSFDTDAAGLKAALQSIKI---LVLMGFNVMVANKSAEKDPDEI 324 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 R GK I E++P + ++ +F P+ +KN N K+ R Sbjct: 325 YRTNGKEGLYNFIKEAIPAEKFIPIALSKKYNFENPNAIQLFLKEIKNWENLFKNFPKRL 384 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Q++ + L + +VK + Sbjct: 385 EIFQSVVKEIS-----------------------------GSSLSTTKIVKKSNFSLDDV 415 Query: 483 REAALLLTLINHPAI------------LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 ++ LIN+P I E + L + ++N +KL ++ + K Sbjct: 416 ----IIYILINYPEIDLEIDPKILNNRSLEILKHLKNFSFENLS-KKLQEYIKEVLEKMK 470 Query: 531 YF-----LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + EEI +++ E+ + L+++D ++++ + + R + L Sbjct: 471 HVEINEEYIEEIKKKIQEKSLEKRLEEIDEYIKNS--------KDPSEKRLLLNTRIELV 522 Query: 586 KRFRLLSR 593 ++ + + R Sbjct: 523 RKLKNIRR 530 >gi|322379303|ref|ZP_08053684.1| DNA primase [Helicobacter suis HS1] gi|322379959|ref|ZP_08054235.1| DNA primase [Helicobacter suis HS5] gi|321147611|gb|EFX42235.1| DNA primase [Helicobacter suis HS5] gi|321148274|gb|EFX42793.1| DNA primase [Helicobacter suis HS1] Length = 580 Score = 259 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 142/602 (23%), Positives = 247/602 (41%), Gaps = 67/602 (11%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ L I ++ Y+D R +N Y A CPFHDEKTPSF N S+ + Sbjct: 33 ISQESLEQLKQVADIVEVVQSYIDLKRVGSN-----YRAICPFHDEKTPSFMINPSRNSF 87 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--IRL 120 C+ C G+ ++F+ FI +VQ+LA + +PL + + L L Sbjct: 88 KCYGCSKAGNAITFVMEYEKLDFISAVQKLAHMFNLPLQYTT-------EQKQTLPSTDL 140 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E + LK + YL +RG+ +I+ F LG+ + + Sbjct: 141 LEKIAQCYQIQLKKH--PLVLDYLKQRGLKEESIKAFNLGFCAPQSVLDFINQEKLDRQA 198 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE-SVKYLNSPET 239 L + G+ S+ R + RLIFPI + G+++ FGGR L + KY+NSP+T Sbjct: 199 LL----ELGVLGEEDNKSFVRLKQRLIFPIHNPNGKMVGFGGRILQDNSGAAKYINSPQT 254 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +LF+K K LY +F A + K + IIL EGY+DV+ L QAG + V++LG Sbjct: 255 VLFNKSKLLYGYFQAREAIFK----------TKQIILTEGYLDVILLQQAGFKTAVATLG 304 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE + +L + P ++L +DGD+ G AA +A ++ L G VLL+ DP Sbjct: 305 TALTETHIPILNRGDPSVILLYDGDEAGYLAALRASKILSLELKRG---GVVLLNNALDP 361 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 I + L+ + +P ++ + K + S + ++ + + ++ + Q Sbjct: 362 ADMITQGKSAELKALLQKPIPFIEFVLKGLVKPYSLSDALQKQKAFKEAQTFLHSLP-QV 420 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 L+ Y L+ + + + ++ Sbjct: 421 LQEEYRPMAASLLKLPRNALTLKKNPLPQMQAAERLIKNP-------------------- 460 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEI 537 E L+ + HP +L + + +++ E L E L ++ Sbjct: 461 ---LEEILIKYMALHPELLTQAKNYIHPETFEHCAQEFNTLC-----LGEENVQILNIKL 512 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 RL F + K E N ++ Q+ L + ++R +Q Sbjct: 513 DNRLPTLSENFEQDFKAQLLLFIKRHCQRRIEETNHLNKELNPQERLEILVKWRTKLQQI 572 Query: 596 EE 597 + Sbjct: 573 NK 574 >gi|299142753|ref|ZP_07035882.1| DNA primase [Prevotella oris C735] gi|298575782|gb|EFI47659.1| DNA primase [Prevotella oris C735] Length = 1319 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 122/462 (26%), Positives = 205/462 (44%), Gaps = 32/462 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + FI+ + + I N++ + + N Y CPFHD+ TPS + S+ Y+ Sbjct: 3 DKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121 CF C GD ++F+ L SFIE+++ A +AG+ P + P+ E K K + I Sbjct: 58 CFVCGASGDVIAFVQHHLNLSFIEALRWCATVAGLEFPQKEMSPEEEAKYKQKEAQRIAI 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A FF +L +D A+ F +GYAP ++ + Sbjct: 118 EAAAKFFQKNLSQ---AESFLNNRGYKLDDKALSDFGVGYAPVGNVAMNTLTAAGYSLDR 174 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETI 240 + + G YDRFR+R++FP +G +I F GR ++ E V KY+N+ ET Sbjct: 175 LKE---VDVVGSTEGRFYDRFRDRVMFPFYDMQGHIIGFSGRIITPREGVGKYVNTGETP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KGK+++ + A + K + LVEG DV+SL + V++V+ GT Sbjct: 232 LFTKGKHIFGLYQARKAIGKK----------GYAYLVEGQFDVMSLHKVDVEHVIGGSGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T+ Q++LL + + IV+ +D D G++A+ K +L L G +V + L +G DPD Sbjct: 282 AFTDDQIKLLLRFTDSIVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F + G A ++ + E KR A+ + + + ++D L Sbjct: 339 EFAKANG-EATQEKLKELTEPFPKALKRMMIPHGCKDETVIADCLNTICSLVACVQDAAL 397 Query: 421 RYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458 R Y ++I ++ + K + + Sbjct: 398 RLEYIKSIAVDFKSKIGIIDDKVRGLRAKVKEALPQTKTQSG 439 >gi|260890618|ref|ZP_05901881.1| DNA primase [Leptotrichia hofstadii F0254] gi|260859663|gb|EEX74163.1| DNA primase [Leptotrichia hofstadii F0254] Length = 607 Score = 258 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 155/634 (24%), Positives = 279/634 (44%), Gaps = 49/634 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y I+ L+ ++ I +IG+YV+ + + DY PF DEKTPSF + K Sbjct: 1 MIYSEKEIQKLIDNLDIVQVIGEYVNLKKAGS-----DYKGLSPFKDEKTPSFTVSPVKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------DPKIEKKEKIQ 114 + FS + G+ +SF + F+++V+ L+ +PL D +IE+K+ + Sbjct: 56 IFKDFSTQIGGNVISFYMKINDIGFLQAVEELSRKYNIPLKKSREYRTIDQEIERKKAVN 115 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + ++ A FF ++ + Y+ ER I F +G+AP R L +HL Sbjct: 116 REYYEIMNEAQIFFRENI--EKYSEALEYMKERDFSLEEIRRFGIGFAPSFRDDLFQHLV 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKY 233 +K F EEKI+ GL + YD FRNR+IFPI + Q++ FGGR + K + KY Sbjct: 174 KKEFPEEKIMSLGLAKRN-ETGEIYDSFRNRIIFPIYNVNAQIVGFGGRIIEKNTNLPKY 232 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 LNSP++ +F KG L+ ++K F +L+EGY+DVL+ + G ++ Sbjct: 233 LNSPDSPIFKKGNELFGIKHQGENIRKK----------GFAMLMEGYLDVLTAQKNGFES 282 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V+SLGTA TE Q +LL K + +I++ +D D+ G A KA ++ + + V+ Sbjct: 283 AVASLGTAFTEEQAQLLKKYTDKILISYDNDEAGKNAIIKAGYILKKYDFDVKCL--VMD 340 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +DPD F+R GK AF +++ +S + D L K +++ N + + LK + Sbjct: 341 GNEKDPDEFLRKNGKKAFIEVVKKSEEIFDFLTKEASKDLDLNDISGKRKFIERLKPFFS 400 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 ++ + Y Q + + E + + + + + + K Sbjct: 401 NVTSNLNKNLYLQRLSANFEIDEFILAEELKNLSKKTSEGKKRKSYENQKVQYK-----K 455 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K L E L+ L + + ++ + L+ + + +L L + + Sbjct: 456 LKKDLYIELEEQTLMYILEFYRSEKEKCMELLSK-GFSHPLFNELIEKLKAVEFDIMQLE 514 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY-KRFRLLS 592 +I E++ +L + +I D + +++ + + +R Sbjct: 515 KIDI-----SEENREIITKLK----------LRADNDIKDKKIYFREIYSGWFEREIDEE 559 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 RQK E E + + I+ + E+ Sbjct: 560 RQKTEEENDRIKKIELKKLLSKLKNINKISEIEK 593 >gi|307565407|ref|ZP_07627896.1| DNA primase [Prevotella amnii CRIS 21A-A] gi|307345857|gb|EFN91205.1| DNA primase [Prevotella amnii CRIS 21A-A] Length = 1319 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 123/462 (26%), Positives = 205/462 (44%), Gaps = 32/462 (6%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + FI+ + + I N++ + + N Y CPFHD+ TPS + S+ Y+ Sbjct: 3 DKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLI 121 CF C GD +SF+ L SFIE+++ A +AG+ P + P+ E K K + I Sbjct: 58 CFVCGASGDVISFVQHHLNLSFIEALRWCATLAGLEFPQKEMSPEEEAKYKQKEAQRIAI 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E A FF +L +D+ A+ F +GYAP ++ + Sbjct: 118 EAAAKFFQKNLSQ---AESFLNKRGYKLDNKALSDFGVGYAPVGNVAMNTLTTAGYSLDR 174 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETI 240 + + G YDRFR+R++FP +G +I F GR ++ E KY+N+ ET Sbjct: 175 LKE---VDVVGSTEGRFYDRFRDRVMFPFYDMQGHIIGFSGRIVTPREGLGKYVNTGETP 231 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF KGK+++ + A + K + LVEG DV+SL + GV++V+ GT Sbjct: 232 LFTKGKHIFGLYQARKSIGKK----------GYAYLVEGQFDVMSLHKVGVEHVIGGSGT 281 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A T+ Q++LL + + IV+ +D D G++A+ K +L L G +V + L +G DPD Sbjct: 282 AFTDDQIKLLLRFTDSIVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDPD 338 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 F + G A + + E KR A+ + + + ++D L Sbjct: 339 EFAKANG-EATQDKLKELTEPFPKALKRMMILHGCKDETVIADCLNTICSLVACVQDAAL 397 Query: 421 RYYYSQAIR----DRLQQLFQKYITEHSGYGRYWKKNARHRD 458 R Y ++I ++ + K + + Sbjct: 398 RLEYIKSIAVDFKSKIGIIDDKVRGLRAKVKEALPQTKTQSG 439 >gi|167750935|ref|ZP_02423062.1| hypothetical protein EUBSIR_01920 [Eubacterium siraeum DSM 15702] gi|167656114|gb|EDS00244.1| hypothetical protein EUBSIR_01920 [Eubacterium siraeum DSM 15702] Length = 535 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 120/498 (24%), Positives = 213/498 (42%), Gaps = 20/498 (4%) Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 +YCF C GD ++F+ ++ESV+ LA AG+ +P + K +T Sbjct: 3 TQSFYCFGCGAAGDVINFIRLYEHLDYMESVKFLAQRAGIAMPDEEGDNGIK--RRTRAY 60 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + A FFH L + K YL RG+ H I + LGYAPD+ SL++H+ G+ Sbjct: 61 EMNREAGRFFHKYLYSPAGKEGLDYLYGRGLTDHTIRTYGLGYAPDTWDSLKKHMNSLGY 120 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S+ ++ EA LL S +D F+ R++FP RG ++ F GR + ++ KYLN+ Sbjct: 121 SDSEMEEASLLSKSSKSGNYFDFFKYRVMFPFIDVRGNIVGFSGRVIGGDDNRKYLNTKA 180 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +++K LY+ A N + S +I+ EG +DV+S+ QAG +N V++ Sbjct: 181 TAVYNKSTFLYSLNHAKNAGK------------SVLIMCEGNLDVISMYQAGFKNAVATC 228 Query: 299 GTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GTA+T+ R + +++L +D D G +A +A+++ G N + + + Sbjct: 229 GTAITDSHARNIANLGFKKVILAYDSDAAGQKATARAMNI---LDKVGISANVLTMQGAK 285 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPD +I+ +GK AF+ LI S +D K+ + P ++E I +I Sbjct: 286 DPDEYIKKFGKEAFQLLIDGSQSGMDYELKKIRSETDLSAPGGKSEYLKKAVGFIANINS 345 Query: 418 QKLRYYYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 R Y I + + R + +R + Sbjct: 346 PIDRAVYISTIAQECDVNRANVDIAVNQIIAKRNKTREKDNRRAILNGSVNRDKINPEAS 405 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E ++ L + P L++ +++ + ++L+ L + Sbjct: 406 RYPAETQAERGIIAYLFHSPDALKKITDKISSDDFVTEFNKRLFIDLTAMISCGLSNDVS 465 Query: 536 EIHQRLCERGFGELLKQL 553 + R + K + Sbjct: 466 MLADRYSAEEVASIYKLI 483 >gi|296163487|ref|ZP_06846234.1| DNA primase [Burkholderia sp. Ch1-1] gi|295886268|gb|EFG66139.1| DNA primase [Burkholderia sp. Ch1-1] Length = 426 Score = 257 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 131/441 (29%), Positives = 207/441 (46%), Gaps = 29/441 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + DF+ L + LI V R ACCPFH+EKTPSFH + K Sbjct: 6 RFGDDFLDRLRSETDLPALIECDVKLKRAG-----QSLVACCPFHEEKTPSFHVSPDKNT 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 Y C+ C +GD + ++ SF ++V LA + G+PLPV D ++ + + L Sbjct: 61 YRCWGCGARGDAIEWMRNKHHMSFHDAVVHLAGVCGIPLPVEDRDSDEDKAQRKRLATLY 120 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++ A F L + R Y ++R + + IE F LG G Sbjct: 121 QALKEAARVFSRGLAKSPAARA-YLEEKRALTAETIERFGLGVVAKG-----VVELMTGS 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLNS 236 + + A L + YDRFR+R++FPI + G ++ F GR++ ++ KY+N Sbjct: 175 TSRDALLASGLAAQRDDGEIYDRFRHRIMFPIHNETGNLVGFAGRSMIEKPDKTPKYINC 234 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +FHKG+ LY A ++ S ++VEGY DV+SL QAG + V+ Sbjct: 235 PETEIFHKGRELYALHLAKPAIR----------SGRVAVIVEGYFDVISLHQAGDERAVA 284 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +GTALT Q+R L + IV FDGD G +AA A ++L + G F+ L Sbjct: 285 PMGTALTNLQVRRLLVHADTIVFAFDGDAAGRKAALAAAAVLLDEMKDGKSARFLFLPED 344 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 EDPDSF+R +G A+ +++PL L N P+ + + K + I+ Sbjct: 345 EDPDSFVRSHGLEAWHAATEQAVPLSAFLADYVAHGLDRNVPESQVKAAEKAKAILARIQ 404 Query: 417 DQKLRYYYSQAIRDRLQQLFQ 437 + +A++ +L+++ Sbjct: 405 HA---ELFGRAMKAKLEEIIG 422 >gi|160947543|ref|ZP_02094710.1| hypothetical protein PEPMIC_01478 [Parvimonas micra ATCC 33270] gi|158446677|gb|EDP23672.1| hypothetical protein PEPMIC_01478 [Parvimonas micra ATCC 33270] Length = 603 Score = 256 bits (654), Expect = 7e-66, Method: Composition-based stats. Identities = 140/618 (22%), Positives = 251/618 (40%), Gaps = 41/618 (6%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I +++ YV + + CPFH EKTPSF ++CF C GD + Sbjct: 16 ADIVSVVSDYVSLKKSGR-----YFMGNCPFHSEKTPSFFLYPETDTFHCFGCGKHGDSI 70 Query: 75 SFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 SF+ + ++ ++++LA GV L + +K + + F++ + Sbjct: 71 SFVMEMESLDYVSTLKKLAEKFGVVLEYDNYFNANNKKSLDKYYEMNKFVAKFYYKKMME 130 Query: 135 ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDN 194 YL +RGI+ +I +F +GYA ++ SL L+ K + E GL+I Sbjct: 131 NL--VPKQYLSKRGINQKSINLFFIGYADENWKSLYNELKSKNMDIKIAEELGLIIKTKT 188 Query: 195 SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254 DRFRNR++FPI + Q+I FGGRT+ +S KYLNSPE+++F KG N+Y Sbjct: 189 GD-YIDRFRNRIMFPILNINKQIIGFGGRTI-VDDSAKYLNSPESVVFKKGDNVYAIDKI 246 Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314 + +S +++VEGYMDV+SL Q G+ VV+ LGTA TE Q RL+ + Sbjct: 247 IENNIRSK-----------VLIVEGYMDVISLYQNGINYVVAGLGTAFTENQARLIKRYF 295 Query: 315 -PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 + LC+DGD+ G+ A K + N ++L DPD +I+ YG F K Sbjct: 296 RNNVYLCYDGDNAGISATNKT---NSVFNEISIKPNIIILPDKLDPDDYIKKYGLNGFNK 352 Query: 374 LIVESLPLVDMLWKRETENRSFNTP-DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 L+ + + ++ +++ + + ++ + + LR Y I + Sbjct: 353 LLDKPYDINGFNYENLKKSKKNSNSITDNTIFYENILEFLTKVDTNILRDLYISKISNEF 412 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + + + K + ++ + + L K ++ L+ Sbjct: 413 GLDRNSLKEDFLNFDKNEKVIEKKNEETEVNYKTENLLLNSDKKVLIMG------IILLM 466 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + +L + N+ L ++ ++ S+ +P + F + Sbjct: 467 KCDNNILNISNKLQEFS-KNSNLYDIFCYVKSNAENNTITVPSVLID-----EFKNSIDN 520 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGY-QQALALYKRFRLLSRQKEEIEKQIAQV---TAK 608 L ++ + + +D + L R ++ +K Q + Sbjct: 521 LKIVEYIVKCYNEKIKLSTLDYIKLLDITILNFEIRKTTINIEKLRQMDQSNEAVISNLN 580 Query: 609 GEAEKTAILISILHEVHI 626 EK L L + Sbjct: 581 FNVEKLMELNRNLKNIEK 598 >gi|304383392|ref|ZP_07365858.1| DNA primase [Prevotella marshii DSM 16973] gi|304335560|gb|EFM01824.1| DNA primase [Prevotella marshii DSM 16973] Length = 1319 Score = 256 bits (653), Expect = 9e-66, Method: Composition-based stats. Identities = 120/463 (25%), Positives = 197/463 (42%), Gaps = 32/463 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI+ + + I N++ + + N Y CPFHD+ TPS + S+ Y Sbjct: 2 IDKLFIEKVKSALNIVNVVESFTHLHKAGVN-----YKGVCPFHDDHTPSMVVSPSRQTY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRL 120 +CF C GD +SF+ L +FIE+++ A AG+ P P+ E + K + Sbjct: 57 HCFVCGASGDVISFVQNYLNLTFIEALRWCAGQAGLDFPEKEMSPEEEARYKEREAQHIA 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 I+ A FF +L + A+ F +GYAP Sbjct: 117 IDAAAKFFQKNLSQ---AESFLVSRGYALTDKALADFGVGYAPVGN---LAMNELTKAGY 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPET 239 + + G N +YDRFR+RL+FP +G +I F GR ++ E V KY+N+ ET Sbjct: 171 SLQRLQEVDVVGSNEGRTYDRFRDRLMFPFYDIQGHIIGFSGRIITPREGVGKYVNTGET 230 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 LF KGK+++ + A + K F LVEG DV+SL + GV+NV+ G Sbjct: 231 PLFTKGKHIFGLYQARKAIGKQ----------GFAYLVEGQFDVMSLYKMGVENVIGGSG 280 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TA T+ Q++LL + + +V+ +D D G++A+ K +L L G +V + L +G DP Sbjct: 281 TAFTDDQVKLLLRFTDYVVMVYDADAAGVKASLKNCEL---LLKAGAKVKCIRLPKGTDP 337 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D F + + + + E KR ++ + + + + D Sbjct: 338 DEFAKAN-VSRTQDKLKELTETFPKALKRMLIPHGCKDETTISDGLNTICSLVACVGDAG 396 Query: 420 LRYYYSQ----AIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 LR Y + + ++ + K K Sbjct: 397 LRLEYVKSVAADFKSKIGIVDDKVRNIRLKIQEALPKTKTQAG 439 >gi|300214613|gb|ADJ79029.1| DNA primase [Lactobacillus salivarius CECT 5713] Length = 328 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 191/339 (56%), Gaps = 20/339 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I++L ++ I ++I QYV + N ++ CPFH EKTPSF N+ K + Sbjct: 5 IPEATIEELRSNVNILDVISQYVQLHKSGKN-----WFGICPFHSEKTPSFSVNEQKQIF 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRL 120 +CFSCH G+ F+ L G SF ESVQR+A +A + + + + + + + +L Sbjct: 60 HCFSCHRGGNVFKFIMELEGLSFPESVQRVAELANYDLGISIDNSENQNETSENGKIRKL 119 Query: 121 IEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + T +HH L + YL +RGI + IE F++G+AP++ QK + Sbjct: 120 YKETTKLYHHILVNTELGEPALEYLHKRGIKDNLIEEFEIGFAPENNILEAFFKEQKLYD 179 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-KGESVKYLNSPE 238 + + ++GL I+ ++ +RF R++FPIR + GQ IA+ GR L + ++ KYLNSPE Sbjct: 180 YQILRKSGLFIERQST-ELVERFNGRVMFPIRDTSGQTIAYSGRLLEKRDDAPKYLNSPE 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T +F+K K L+NF A +++ IL EG+MDV++ ++GV+N ++S+ Sbjct: 239 TAIFNKRKVLFNFDKAKGIIRR----------EKEAILFEGFMDVIAAYRSGVKNGIASM 288 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337 GT+LT+ Q++ L +++ +V+C+DGD+ G A +A Sbjct: 289 GTSLTDEQIQALNRITSHLVICYDGDNAGQNATKRAXRN 327 >gi|32474202|ref|NP_867196.1| DNA primase [Rhodopirellula baltica SH 1] gi|32444739|emb|CAD74741.1| DNA primase [Rhodopirellula baltica SH 1] Length = 736 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 144/714 (20%), Positives = 253/714 (35%), Gaps = 125/714 (17%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D + + I ++IG ++ + + A CPFH++ PS N + + C+ Sbjct: 39 DVKERVRAATDIVDVIGHDLELRPQGR-----HFVARCPFHNDTRPSMTVNQERQSWKCW 93 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIE 122 C + GD SF+ G F +++ LA AG+ +P + + L++ ++ Sbjct: 94 VCDIGGDIFSFVMQREGVDFPTALRSLAERAGIEIPEFNRGPKTQPGSPDDKATLMKAVD 153 Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + L K+ K YL RGID E+FK+G+APDS L++ FS Sbjct: 154 LICRAYFDELACGKSDDAKLARDYLASRGIDDSNRELFKIGFAPDSWDFAVNLLKRNKFS 213 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS------------- 226 E AG+ I D + YDRFR RL+FPI +++GQ I+ GGR + Sbjct: 214 EAVAQAAGVAIGRDGKSGCYDRFRGRLMFPIDNAQGQAISLGGRIIPAIANRIAEAKGDG 273 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 KY+N PET+LF K LY A + ++ ++ ++++EGY DV++ Sbjct: 274 SNGGAKYINGPETMLFRKSNELYGLHLARDAMR----------AADEVLVMEGYTDVVAT 323 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 AG+ + V+ LGTALT +R+L + R+VL DGDD G R A + ++L + Sbjct: 324 RMAGIDHSVAVLGTALTASHVRVLKRFVNRVVLVLDGDDAGKRRAEEVLEL---FVTADA 380 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + L G DP F+ + ++ +D R TE R I Sbjct: 381 DLRILTLPDGLDPADFLAQQSAANLLDMAGKAPDAMDHKLNRLTEGVDVTRDTHRVTTAI 440 Query: 407 HLK------------NCINHIKDQKLR-----YYYSQAIRDRLQQLFQKYITEHSGYGRY 449 I +R + ++ RL+ + ++ RY Sbjct: 441 ETMLGVLTKTPTKSDKTELKIDQLLVRMSQTFGLPVERLQRRLETVREETAERERKQARY 500 Query: 450 WKKNAR-----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL---------------- 488 K N P+ + S E A + Sbjct: 501 RKANTSGGHQDSAQTSAPASQKPASRPPSSASMDDFDPFEQAAMEDAAAFGIDEGFDDYA 560 Query: 489 ------LTLINHP-------------------------AILQEQY----------QELAD 507 NHP + + + + Sbjct: 561 PSTPSDFGAANHPRRNSPSGPTRPQPPEQGAAITGVDRELFEILIESPEVAAMAVEAIDP 620 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 +N + L S ++ + + + L + L ++ Sbjct: 621 SWLHSNTAKMLLSAYQDLDLQGRDLDVDSVLVLLENDFLKNQIITLQERIEQRA------ 674 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--KTAILIS 619 +++D A+ R R +K +++ + + E L + Sbjct: 675 -GHVLDEPHLRYTAILTRFREREFDAEKTRQIEKLQSASLPEDEELAMLEQLFA 727 >gi|148927129|ref|ZP_01810758.1| DNA primase [candidate division TM7 genomosp. GTL1] gi|147887423|gb|EDK72868.1| DNA primase [candidate division TM7 genomosp. GTL1] Length = 370 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 107/391 (27%), Positives = 197/391 (50%), Gaps = 25/391 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D +D+ + I ++I +YV R N + PF EKTPSF + K ++ Sbjct: 2 QDAKEDVRSRLNIEDVIAEYVPLKRAGRN-----FKGLSPFTQEKTPSFFVSPDKHIWHD 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLIEV 123 FS + GD SF+ + G F +++ LA AGV L + K + L +++ Sbjct: 57 FSSNKGGDVFSFIMEVEGIDFRAALELLARKAGVDLSLYRSSASQGIAKKKHRLHEALDI 116 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 A +++ +L + Y +RG+ ++ F++GYAP + +L + L +GFS +++ Sbjct: 117 AANYYQQTLVRNQHALE-YVFKKRGLSKKVVQDFRIGYAPSTGDALTQFLLGRGFSAQEL 175 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILF 242 +AGL D FR R++ P+ +GQV+ F R + ++ KY+N+P+T+L+ Sbjct: 176 QDAGLATRRYR--GLGDMFRGRMMVPLMDGQGQVVGFTARLIDDDPKAPKYINTPQTLLY 233 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 KG+ ++ A ++ ++ + ++VEG +DV+S Q V+ VV++ GTA+ Sbjct: 234 DKGRQVFGLHLAKEAIR----------TNDYAVIVEGNLDVVSSHQVDVRQVVATAGTAM 283 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDS 361 T++ L+ L +LS + L FD D GL A +AI + G ++ + L +DPD Sbjct: 284 TQWHLKALRRLSENVRLSFDSDKAGLAATERAIPIAQ---EAGVNLSIITLPDDAKDPDE 340 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 I+ ++ I + P+VD + ++ + Sbjct: 341 LIQ-QSIEKWQGAINTAQPVVDWVLEQYSRR 370 >gi|90411914|ref|ZP_01219922.1| DNA primase [Photobacterium profundum 3TCK] gi|90327172|gb|EAS43544.1| DNA primase [Photobacterium profundum 3TCK] Length = 518 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 139/553 (25%), Positives = 246/553 (44%), Gaps = 46/553 (8%) Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDF 127 G+ L F+ F+E+++ L++ G+ +P D + + L + + + F Sbjct: 2 HGNVLDFVMEFDRLEFVEAIEELSSQLGLEVPREDGGKPSGPRAAEKRSLYDQMGLISQF 61 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 + L+ K YL RG+ ++ F +GY PD +R + S++ ++ G Sbjct: 62 YQSQLRTPDGKTAIDYLKNRGLSGEVVQKFGIGYIPDQWDMVRSRFGRDPESQKALVTTG 121 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 +LI+ D+ YDRFR R++FPI RG+VI FGGR L + KYLNSPET +FHKG+ Sbjct: 122 MLIENDSGRR-YDRFRGRVMFPIHDRRGRVIGFGGRVL-GDGTPKYLNSPETPIFHKGRE 179 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY + L ++ + +++VEGYMDV++L Q GV V+SLGTA T L Sbjct: 180 LYGLYEVLQAHREPEK----------LLVVEGYMDVVALAQFGVDYAVASLGTATTSDHL 229 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 + L++ + +V C+DGD G AA++A++ L L G ++ F+ L GEDPDS IR G Sbjct: 230 QTLFRQTSTVVCCYDGDRAGREAAWRAMEQALPFLTDGRQLKFMFLPDGEDPDSCIRAEG 289 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 K AFE+ +++PL + ++ ++ + A+L I I+ + LR Y + Sbjct: 290 KDAFEERTNQAMPLTEFIFNTLMRQVDTSSKEGMAKLSILAVPLIDKVPGGTLRLYLREL 349 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +L + + + S++ +++ + K+ +REA Sbjct: 350 LGKKLGLPDEAQLQQL------------------ISKQGIETKKIAAPEIKRTPMREA-- 389 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + LI P + E+ D + L + ++ + Sbjct: 390 IALLIQKPNFVNSLEFEMTDFEGIDVPGLNLLLSIVDKCRTNPNITTGQLLEHWRGNKQE 449 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEIEKQIAQV 605 ++ +L D Q L R + + +Q E+++ + V Sbjct: 450 AMMARLAAWELPLS----------DDEDQTLNVFLDAMDRIIGQCVKQQIEKLQAKSNTV 499 Query: 606 TAKGEAEKTAILI 618 E ++ L+ Sbjct: 500 GLSVEEKQELQLL 512 >gi|32262749|gb|AAP77796.1| DNA primase [Helicobacter hepaticus ATCC 51449] Length = 519 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 134/561 (23%), Positives = 244/561 (43%), Gaps = 53/561 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH+EKTPSF + +KGFY+C+ C V GD + FL SF+ESV+++AA+ Sbjct: 1 MACCPFHNEKTPSFIISPTKGFYHCYGCGVGGDAIKFLMEYEKLSFVESVEKIAAMTNFA 60 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 L + +K + I +++ F+ L + K YL R + + +IE F+L Sbjct: 61 LEYENTYEKKPDSI------VLDEIMRFYQKQLLSH--KPSLEYLASRQVANASIEKFRL 112 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 GY S ++ + +E + I G ++ Y RF +R+IFPI S G+V+ Sbjct: 113 GYCGASFETINFLNAKILNKQEALEF---GIIGKDNGREYARFNDRIIFPIHSPNGKVVG 169 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 FGGRT+ + KY+NSP++ +F+K K LY ++ A + + K + II+ EG Sbjct: 170 FGGRTM-SNANAKYINSPQSKIFNKSKLLYGYYLAKDRIYKQKK----------IIVCEG 218 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339 Y+DV+ L QAG V++LGTALT+ L LL K P+++L +DGD G+ AA+KA ++ Sbjct: 219 YLDVIMLHQAGFDYAVATLGTALTKEHLPLLRKGEPKVILSYDGDKAGINAAFKAAKILS 278 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 I G V+ G DP + +L + ++ + + P Sbjct: 279 EASIEG---GVVIFENGADPADMVAHKQINELSELFSHPISFIEFVLTHIARSYELENPL 335 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 ++ + ++ + L+ Y + L + T+H+ Sbjct: 336 QKEKALAESTQFLHTL-SPLLQEEYKPLLARLLSLPTRLIHTQHNKAHSTQTIFNASMQ- 393 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL- 518 E+ L+ + + P ++ + + + + +K+ Sbjct: 394 ---------------------DFAESVLIKSFLEKPNLIDFAIEYIDISLF---KYKKIE 429 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 + + + + L ++ + L + L V A + ++ Sbjct: 430 FGLVTNQCYDDPRLLAISLNDNIKPLPDLPSLKEHLRLFVTQAYSQLLGQIPHSNEMSLR 489 Query: 578 YQQALALYKRFRLLSRQKEEI 598 + + + ++L+ +K E+ Sbjct: 490 RKSEIIKELKTKILTLKKGEL 510 >gi|124025647|ref|YP_001014763.1| DNA primase [Prochlorococcus marinus str. NATL1A] gi|123960715|gb|ABM75498.1| CHC2 zinc finger:Toprim domain [Prochlorococcus marinus str. NATL1A] Length = 625 Score = 254 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 152/584 (26%), Positives = 260/584 (44%), Gaps = 39/584 (6%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 K FYYCFSC G+ + FL SF + V LA VP+ ++ +++ K Sbjct: 1 MSVIPGKQFYYCFSCGAGGNAIKFLMEFQRQSFSDVVLELAKKYQVPIDTIEGPQQERLK 60 Query: 113 ----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRY 167 + L R+++ AT +F + L + + YL ++R + + F+LG+APD+ Sbjct: 61 QQLSRRDTLYRVLKTATGWFRNQLNSPCGENALNYLKNKRNLSDGTLINFELGFAPDNWD 120 Query: 168 SLREHLRQ-KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 SL ++ + S E + AGL++ YDRFRNR+I PI + +VI FGGR+L Sbjct: 121 SLLKYFVDIEKVSVEILESAGLIVPRKGGNGFYDRFRNRIIVPIHDRQKRVIGFGGRSLD 180 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 E KYLNSPET +F KGKNL+ F + ++K + ++VEGY DV++L Sbjct: 181 GSEP-KYLNSPETEIFEKGKNLFGFDKSTLSIRKK----------DYAVVVEGYFDVMAL 229 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 +G+ NVV+SLGTAL+ Q+ LL + S +I+L FD D+ G+RAA +AI V I Sbjct: 230 HDSGITNVVASLGTALSRNQITLLSRATDSKKILLNFDSDNAGIRAANRAISEVENLAIQ 289 Query: 345 G-NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 G + + L G+DPD F++ + +E L S +D + ++ + D+ E Sbjct: 290 GQLDLRVLQLPSGKDPDEFLKGNSPSEYEALAARSPLWMDWQIDQSLKDLDLSKSDQFQE 349 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 L + + + +R +Y Q + RL ++ + R R + Sbjct: 350 AVSSLVSLLGKLPQTAIRTHYLQKVAQRLSGGQGRFALQLEEDLRNQISGQRWHGRSKK- 408 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHP---AILQEQYQELADIRYDNNELQKLWS 520 + K + E+ +L T I+ P + ++ + + + N + +WS Sbjct: 409 -------IDKPQEISLRERSESDILFTYIHCPNYRSFIRYELRLRDLDDFAINHHRAIWS 461 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFG----ELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + E R + +L+K+L + ++DV + Sbjct: 462 TISNIEENMFGPETVEKINRFNDSNNILADVDLIKKLLDNFLSSDNEHLPKLTPLLDVNE 521 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQ--IAQVTAKGEAEKTAILI 618 + L + +EKQ + + +A + L Sbjct: 522 --LRLATLNDPESFIRGAMAALEKQKSLKRCRHLIDAWSSQRLQ 563 >gi|327539654|gb|EGF26262.1| DNA primase [Rhodopirellula baltica WH47] Length = 736 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 144/703 (20%), Positives = 260/703 (36%), Gaps = 87/703 (12%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 D + + I ++IG ++ + + A CPFH++ PS N + + C+ Sbjct: 39 DVKERVRAATDIVDVIGHDLELRPQGR-----HFVARCPFHNDTRPSMTVNQERQSWKCW 93 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD---PKIEKKEKIQTDLIRLIE 122 C + GD SF+ G F +++ LA AG+ +P + + L++ ++ Sbjct: 94 VCDIGGDIFSFVMQREGVDFPTALRSLAERAGIEIPEFNRGPKTQPGSPDDKATLMKAVD 153 Query: 123 VATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + L ++ K YL RGID E+FK+G+APDS L++ FS Sbjct: 154 LICRAYFDELASGQSDDAKLARDYLASRGIDDSNRELFKIGFAPDSWDFAVNLLKRNKFS 213 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS------------- 226 E AG+ I D + YDRFR RL+FPI +++GQ I+ GGR + Sbjct: 214 EAVAQAAGVAIGRDGKSGCYDRFRGRLMFPIDNAQGQAISLGGRIIPAIANRIAEAKGDG 273 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 KY+N PET+LF K LY A + ++ ++ ++++EGY DV++ Sbjct: 274 SNGGAKYINGPETMLFRKSNELYGLHLARDAMR----------AADEVLVMEGYTDVVAT 323 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 AG+ + V+ LGTALT +R+L + R++L DGDD G R A + ++L + Sbjct: 324 RMAGIDHSVAVLGTALTASHVRVLKRFVNRVILVLDGDDAGKRRAEEVLEL---FVTADA 380 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + + L G DP F+ + ++ +D R TE R I Sbjct: 381 DLRILTLPDGLDPADFLAQQSAANLLDMAGKAPDAMDHKLNRLTEGVDVTRDTHRVTTAI 440 Query: 407 HLK------------NCINHIKDQKLR-----YYYSQAIRDRLQQLFQKYITEHSGYGRY 449 I +R + ++ RL+ + ++ RY Sbjct: 441 ETMLGVLTKTPTKSDKTELKIDQLLVRMSQTFGLPVERLQRRLETVREETAERERKQARY 500 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI---LQEQYQELA 506 K N Q S + S+ + A + E + + A Sbjct: 501 RKANTSGGHQDSAQTSAPASQKPASRPPSSASMEDFDPFAQAAMEDAAAFGIDEGFDDYA 560 Query: 507 ---DIRY---DNNELQKLWSFLFSDFVEQKY----FLPEEIHQRLCERGFGELLKQLDRQ 556 + ++ EQ E + + + Sbjct: 561 PSTPSDFGAANHPRRNSPSGPPRPQPPEQGAAITGVDRELFEILIESPEVAAMAVEAIDP 620 Query: 557 VRDAGLWSATTEANIVDV----RQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611 + + D+ R ++ + L Q ++++I + + Sbjct: 621 SWLHSNTAKMLLSAYQDLDLQGRDLDVDSVLVLLENDFLKNQIITLQERIEQRAGHVLDE 680 Query: 612 E--KTAILISILHEVH------IQIHQIES-------QEAMIE 639 + +++ E QI +++S + AM+E Sbjct: 681 PHLRYTAILTRFREREFDAEKTRQIEKLQSASLPEDEELAMLE 723 >gi|288818664|ref|YP_003433012.1| DNA primase [Hydrogenobacter thermophilus TK-6] gi|288788064|dbj|BAI69811.1| DNA primase [Hydrogenobacter thermophilus TK-6] gi|308752253|gb|ADO45736.1| DNA primase [Hydrogenobacter thermophilus TK-6] Length = 514 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 131/579 (22%), Positives = 237/579 (40%), Gaps = 70/579 (12%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++L I I +I Y+D + +N Y A CPFH + TPSF + S+G + CF C Sbjct: 5 EEILRKIDIVEVISSYIDLKKVGSN-----YSARCPFHPDDTPSFFVSPSRGIFKCFGCG 59 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 V GD + F++ S+ E++ +LA G+PL + ++++ + +IR++E+ D++ Sbjct: 60 VGGDAIKFVALYENISYSEALIKLAKRYGIPLKI------REDRKDSKVIRILELVADYY 113 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H++LK + YL RG+ S +I+ F+LG++P S + ++ + + Sbjct: 114 HNALKKS--PHAVDYLKSRGVSSRSIQKFRLGFSPSSEELVNFLRKEGLIDAYEKTGNLV 171 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 ID D F R++ PIR RG+ IAFGGR L +G+ KY+NSPE+ F K + + Sbjct: 172 KID---EGIYRDLFTGRVVIPIRDERGRCIAFGGRVLYEGKP-KYINSPESEFFKKREVM 227 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 + + +++ F I+VEGY DV+S+ G +N V+ LGT+ E + Sbjct: 228 FGLYEGKEHIK----------DMGFAIIVEGYFDVISMHDEGYKNTVAPLGTSFGEEHAK 277 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 LL + + ++L FDGD G RA + L +V L GEDP + K Sbjct: 278 LLSRYTKDVILLFDGDSAGKRAIRQTA---PYLLSQDIKVRVAYLPEGEDP-DTLVKRDK 333 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 L+ + + ++ K + + E L +K++ ++ + Sbjct: 334 ELLRLLLEGAKDIFELFIKMLR--------EGQKEALKDLVYFAGFVKNKVYQHDILREA 385 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + R + + +K + E L Sbjct: 386 SQVSGFALSALYDQLPKVQRKEE----------------------KEEDEKLTYAERIFL 423 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L L+ +E + ++ + S + +PE + Sbjct: 424 LGLMK------LGKEEYLKDVLLSPNAMRIAEHILS---GDYHLVPESVKNAKVYDLESA 474 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 L + + ++ + QQ + KR Sbjct: 475 FLASCEMLKIGKEEFKEGVKSIKDMREEKSQQVVRFRKR 513 >gi|29840585|ref|NP_829691.1| DNA primase [Chlamydophila caviae GPIC] gi|29834935|gb|AAP05569.1| DNA primase [Chlamydophila caviae GPIC] Length = 591 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 139/588 (23%), Positives = 241/588 (40%), Gaps = 49/588 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 Y + + +L I I ++ +++ R Y ACCPFH EKTPSF N + +Y Sbjct: 2 YTEESLDNLRHSIDIIEVLSEHLHLKRSGA-----TYKACCPFHVEKTPSFIINPTGAYY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIRL 120 +CF C GD +SFL LG SF E+V L+ V L + D + + +L ++ Sbjct: 57 HCFGCGAHGDAISFLMNHLGYSFSEAVLTLSKKFHVDLIVKIKDTQSPFSTGAKDELRQI 116 Query: 121 IEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 A F L A + YL RG I+ F LGYAP+ ++ + Sbjct: 117 NSEAEKLFRFCLYQLAEGREALQYLYRRGFSPDTIDRFHLGYAPEQTLFIQAMREKDISE 176 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPE 238 ++ + + R+IFP+ + G I F R L KY+N+PE Sbjct: 177 KQLEDAGFIGNKWFLFSR-------RIIFPVHDALGHTIGFSSRKFLENTRGSKYVNTPE 229 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 TI+F K + L+ + + K R +ILVEG D L + +G +++ Sbjct: 230 TIIFKKSRALFGLHLSRRRIAKEKR----------VILVEGQADCLQMIDSGFNCTLAAQ 279 Query: 299 GTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 GT+ TE ++ L + L FDGDD G++AA + D+ G V L +GE Sbjct: 280 GTSFTEDHVKELSKLGVLKAYLLFDGDDAGVKAAIRVGDMCQ---TAGIAVMVCRLPKGE 336 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DPDSF+ G +L+ +S + L + +P E+A + I + Sbjct: 337 DPDSFLMHKGARLLGELLDQSEDYLTFLVSEKIRVYPNFSPREKALVIEETITQIKKWGN 396 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + + L+QL + S K + K P + + + Sbjct: 397 LIV-------VYEHLKQLASLMMIPESMVFSLAKLESGITPSKAPVANKEKLPKIHSDV- 448 Query: 478 KKPSLREAALLLTLI----NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E +L ++ ++ +I + + + E +KL+S L + + L Sbjct: 449 ----IIETDILRCMLFCKPHNISIPHTAKNYFTAMDFKHPECRKLFSHLIEYYEKHHSNL 504 Query: 534 P-EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 P ++ L ++ ELL + R++ L + ++ + +++ Sbjct: 505 PFDKALSLLEDKIIIELL--IKRRINTDCLENVFVQSLQKLADRQWRE 550 >gi|116514980|ref|YP_802609.1| DNA primase [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256834|gb|ABJ90516.1| DNA primase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 590 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 140/499 (28%), Positives = 242/499 (48%), Gaps = 40/499 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++FI +++ I +I +Y+ + N Y CPFH EKTPSF N K F Sbjct: 8 KIPQEFIHEIIEKTNIIEIINRYITLKKTGNN-----YKTLCPFHYEKTPSFTVNSEKQF 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV--VDPKIEKKEKIQTDLIR 119 +YCF C + G+ + FL F+ S+ L ++ G+ +P + + +KK + + + Sbjct: 63 FYCFGCGIHGNVIDFLMQYEKLDFLSSINELTSLHGIKIPYIQYNSQFKKKFFYKKKIYK 122 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +++ + + +L ++ YL +RGI S ++ F LGYA + Y + +++K + Sbjct: 123 ILKKTSKIYIKNLFKVPNQAY-NYLIKRGITSKIMKNFSLGYALSNNYQITNFIKKKTTN 181 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 II+ GL I N DRF+ R+IFPI++ G + FGGR +++ KYLNSPET Sbjct: 182 ISTIIDCGLSIYEKNKIK-QDRFKERIIFPIKNKYGIIKGFGGRIINQYNYPKYLNSPET 240 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 I F K KNLY + ++ I++VEGY DV+SL Q + ++ LG Sbjct: 241 ITFFKKKNLYGIYE----------LILKNPKPKKILVVEGYFDVISLAQKNINYSIALLG 290 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T +T YQ++ ++++S +I+ CFDGD G A++K+++L+L L +NF+LL + EDP Sbjct: 291 TNITTYQIKKIFQISKKIIFCFDGDKAGRIASWKSLNLILPFLYDEYIINFLLLPKNEDP 350 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 S I GK FEK I +S +K+ T + + ++ +L I I + Sbjct: 351 SSLIIKEGKKKFEKRIKKSESFYSFFFKKVTNKINLSCINDCIKLSRITIPLIKKIPSKI 410 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ Y + + +++ L + + + Q K Sbjct: 411 IKIYLRKILGNKIGILDSYQLKKLIQF---------------------QKEKKKKINKPV 449 Query: 480 PSLREAALLLTLINHPAIL 498 L+ +I +P ++ Sbjct: 450 KITTMRLLISLIIQYPKLV 468 >gi|332295128|ref|YP_004437051.1| DNA primase [Thermodesulfobium narugense DSM 14796] gi|332178231|gb|AEE13920.1| DNA primase [Thermodesulfobium narugense DSM 14796] Length = 560 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 134/603 (22%), Positives = 259/603 (42%), Gaps = 51/603 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + I I+++IG YV +R CPFH+EKTPSF+ N KG +YCF C Sbjct: 5 DYIKKQISITDVIGHYVHLRQRGN-----SLVGLCPFHNEKTPSFYVNPEKGLFYCFGCK 59 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 V GD +FL L +F+E+ ++ A+I G V+ E + + ++R++ A FF Sbjct: 60 VGGDVFTFLMKLENLTFVEAFKKAASICG-----VEVSSEFESSSKDQVLRVLREAGLFF 114 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 SL K Y+ RG ++ +++G+ P+ L E L++ FSE+ I ++ + Sbjct: 115 RESLWKESGKNALEYMRSRGFSDDFLKEYEIGFVPEDASELVERLKKLSFSEDIIYKSAI 174 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKN 247 N R R+ FPI++ +++AFGGR + +S KYLN P+T++F K Sbjct: 175 F---LNFKEGVLRLSGRVSFPIKNVESEIVAFGGRLIKNDLDSPKYLNYPDTLVFRKKNT 231 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 L+ A +++ S R +ILVEGY+D L + Q G +N V+SLGT L Sbjct: 232 LFLIDKAFEHIKSSQR----------VILVEGYLDALMMHQKGFRNTVASLGTTLNPSSF 281 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 + + KL R+++ +D DD G A + +++ ++ L G DP + Y Sbjct: 282 KRIDKLVERLIIMYDSDDAGRIATNRLLNMTDQFS---CNLSVASLPEGLDPHDVLTKYD 338 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 K+ E+++ + VD + S +R + + ++ N ++ + + Sbjct: 339 KSVMERILQNYISGVDFRINLIFSDPSNTIESKRQKYRLAIRELQNLGAEEI--EDFVKK 396 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + ++L + +++ + + + Sbjct: 397 VSEKLHVPESRILSDSERMSKRKMSGEKIFYNLVNYFD-------------------RHI 437 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L T+I P + +++ E + +F+ ++ + + Sbjct: 438 LRTIIERPDFYFLLKSFDYSMLFNDEEFLQAAEEIFNMDSFDIDENILDLSDKTKAKVSQ 497 Query: 548 ELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 +L+ + + L A T N++ +++ + F L+++++E+ +IA+ Sbjct: 498 IILEDVPIIPDDQWEEILQLAWTRKNMLLLKENLSKDKDAMVEFLELAKKEKELSSKIAR 557 Query: 605 VTA 607 + Sbjct: 558 IND 560 >gi|320321555|gb|EFW77664.1| DNA primase [Pseudomonas syringae pv. glycinea str. B076] Length = 428 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 121/433 (27%), Positives = 193/433 (44%), Gaps = 30/433 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y +F+ + + +IG+ + + + ACCPFH EKTPSF + + Sbjct: 6 RYSDEFLARVREDADLVGIIGRDITLKKAGK-----AFKACCPFHGEKTPSFEVSPERNT 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ----TDL 117 Y C+ C +GD + ++ F E+V +A+ +G+ +P + +++ L Sbjct: 61 YKCYGCPAQGDAIKWMMEFHKLPFQEAVAAVASDSGIAVPESQVDDSAESQMRRSRLASL 120 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + ++ A + ++ + R + I ++LG L K Sbjct: 121 TKALQDAARLYAGGIERSPTGRQYLTTTRSL-SEETITSYQLGTVATG----VVELLAKR 175 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL--SKGESVKYLN 235 E +IE GL I +DRFRNR++ PI + G +I F GR++ + KYLN Sbjct: 176 HDPETLIECGLAIRA-EDGRLFDRFRNRIMIPIYNESGALIGFAGRSMIEKPDRTPKYLN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPET LFHKG LY A ++ S+ I+VEGY DVL+ QAG VV Sbjct: 235 SPETELFHKGNELYALNVAKATIR----------SARHAIVVEGYFDVLTAHQAGDCRVV 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTALT Q R L+ + + FDGD PG AA +A +VL + G F+ L Sbjct: 285 APMGTALTNTQARRLFSHADTVTFAFDGDKPGRSAALRASAVVLEEIRDGKTAQFLFLPE 344 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPD I +G A+ + + PL L + P+ + + + + Sbjct: 345 GSDPDQLIASHGLDAWNDALATAYPLSRFLADYVKHGLDMDVPESQVRAAEKARKILARV 404 Query: 416 KDQKLRYYYSQAI 428 ++ L Y QA+ Sbjct: 405 REATL---YKQAL 414 >gi|218282284|ref|ZP_03488583.1| hypothetical protein EUBIFOR_01165 [Eubacterium biforme DSM 3989] gi|218216752|gb|EEC90290.1| hypothetical protein EUBIFOR_01165 [Eubacterium biforme DSM 3989] Length = 422 Score = 250 bits (637), Expect = 6e-64, Method: Composition-based stats. Identities = 113/443 (25%), Positives = 203/443 (45%), Gaps = 23/443 (5%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M+ + IK + I +++ Y+ +++ N Y A CPFHD+ PS + K Sbjct: 1 MSWISEEDIKAIRQQADIVDVMSHYITLEKQGKN-----YKAICPFHDDHDPSLSISTDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 + CF C+ G+ +F+ + SF+E+V ++A PL + K + K L Sbjct: 56 QIFKCFVCNTGGNVFTFVQKIENISFLEAVCKVAEWIHYPLHLDTSKFQVKVDENQPLFD 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 I+ F L++ + + YL +R I+ I+ F++GYAP+S S++ K Sbjct: 116 CIQSYIRFLTFELESENGESVKRYLSQRKINEDIIKRFEIGYAPESSRSVKYL---KAKG 172 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238 + I + + +Y F +RL+ PI G + F R L++ + KY+N+ E Sbjct: 173 FNEQILLDTGLIRTHDLNTYAVFDHRLMIPIHDEHGNPVGFTARRLNEDKDIAKYINTSE 232 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 T ++HKG ++N+ A + +K+ R ILVEG MDV++ +A + ++ L Sbjct: 233 TKIYHKGNLIFNYHRAKEFAKKNKR----------CILVEGAMDVIAFEKADIHESIACL 282 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA T+ Q+ LL +L+ +V+C+DGD G A YK L + G + V + G+D Sbjct: 283 GTACTKEQMTLLKRLNVPLVVCYDGDRAGKAATYKFGKLAVD---YGLNFSIVKNTTGKD 339 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 PD GK + +++ V+ L++ + +++ + ++ I Sbjct: 340 PDEIFNELGKDELYLSVHKTVSFVEFLFEYLPNQYDLDNYEDKKKFTSEMQAFIERTCTD 399 Query: 419 KLRYYYSQAIRDRLQQLFQKYIT 441 + Y IRD + Sbjct: 400 FEKADYYSRIRDLTGFDLSNSAS 422 >gi|83754038|pdb|2AU3|A Chain A, Crystal Structure Of The Aquifex Aeolicus Primase (Zinc Binding And Rna Polymerase Domains) Length = 407 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 133/440 (30%), Positives = 202/440 (45%), Gaps = 37/440 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I +L I I ++I +Y++ ++ +N Y CPFH + TPSF+ + SK + CF Sbjct: 5 SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCF 59 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C V GD + F+S S+ E+ LA G L +K + ++ Sbjct: 60 GCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKL------DLEKISKDEKVYVALDRVC 113 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 DF+ SL R+ Y+ RGID F LGYAP S ++ K + Sbjct: 114 DFYRESLLKNREASE--YVKSRGIDPKVARKFDLGYAPSSEALVKVL---KENDLLEAYL 168 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 + D F R++ PI+ RG+VI FGGR + + +S KY+NSP++ +F KG Sbjct: 169 ETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKG 228 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +NL+ + A Y++ F ILVEGY D+L L G++NVV+ LGTALT+ Sbjct: 229 ENLFGLYEAKEYIK----------EEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQN 278 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q LL K + ++ + +DGDD G +A AI L L G V V L G DPD FI+ Sbjct: 279 QANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKE 335 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 +GK +LI S L + L K + E + + I D R+ + Sbjct: 336 FGKEELRRLINSSGELFETLIKTAR--------ENLEEKTREFRYYLGFISDGVRRFALA 387 Query: 426 QAIRDRLQQLFQKYITEHSG 445 + + + + + Sbjct: 388 SEFHTKYKVPMEILLMKIEK 407 >gi|85057388|ref|YP_456304.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789493|gb|ABC65225.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] Length = 604 Score = 249 bits (636), Expect = 8e-64, Method: Composition-based stats. Identities = 135/613 (22%), Positives = 254/613 (41%), Gaps = 42/613 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I + + I +L+ ++V + N Y CPFHDEKTPSF + + Sbjct: 1 MKDNKQLINQINEKMTILDLVQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPERN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 C SC G+ + F ++ +++ LA G+ +K + Sbjct: 56 IGVCMSCKKGGNPVFFYKSIKNIHLNQAIFELATRLGI----NTSLRQKNTSQYQKFYNI 111 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 ++ ATDF+ H LKN K++ YL++RG + I+ FKLGYAP + + R + F Sbjct: 112 MQEATDFYAHQLKNN--KQVLNYLEQRGFGNEIIKKFKLGYAPKASHLSRYLIEFAKFDP 169 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + L+ D + YD F+NR+IFPI + GQ++AF R+L + KYLNSPET+ Sbjct: 170 DDLKKLNLINQNDKTGKFYDFFKNRIIFPITNKSGQIVAFSSRSL-DNKIPKYLNSPETV 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F KG+NLY ++ ++K +IL EG+ DV++ +A V+NVV+++GT Sbjct: 229 IFKKGENLYQYYENQAEIRKK----------QTVILHEGFFDVMASFKAQVKNVVATMGT 278 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 LT RLL KL+ +I++ +DGD G A +++ +V ++ DPD Sbjct: 279 NLTSVHTRLLKKLTDKIIIAYDGDKAGKTAT---LEIGTFLQKNNFQVQILVFPNNLDPD 335 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +I+ G +++L+ + + + + ++ Sbjct: 336 EYIKTEGPEKYQRLL---TDDLKDFLALKVDLICQKMDYYNQTQTKKELQKLFKSSSFEI 392 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + ++ + Q K + Q+L Sbjct: 393 KIIYQEYLQKKYQLTVN------LNSQVSIDKTPKPLYIAQTKQQLNAIKFDIKIEIIIE 446 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL---PEEI 537 L AA T +P + +++ + L +++ + + + EEI Sbjct: 447 LLLNAAFFKT--QNPKTFAIIKKTPG---FNDLQCNCLLNYIKNYYKKNPQQNYIPWEEI 501 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + +LL +++ + + Y + L + + ++ E Sbjct: 502 KNTTFKENIDDLLTSIEKHHFFQMQKRPLLKDKEGKIFSNYIKELEIRDKIEQKQQKINE 561 Query: 598 IEKQIAQVTAKGE 610 + ++ Q+ + Sbjct: 562 LNDKLLQIDNTEK 574 >gi|197294658|ref|YP_001799199.1| DNA primase [Candidatus Phytoplasma australiense] gi|171853985|emb|CAM11948.1| DNA primase [Candidatus Phytoplasma australiense] Length = 582 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 144/618 (23%), Positives = 250/618 (40%), Gaps = 57/618 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + I+++ I L ++V + N Y CPFHDEKTPSF + K C Sbjct: 3 KQLIQEINEKTSIVELAQEFVQLKKSGKN-----YMGLCPFHDEKTPSFSVSPEKNIAVC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 SC G+ + F + SF E+V +L A G+ + K+ L +++ A Sbjct: 58 MSCKKGGNPVFFYQNIKNISFREAVAQLGARLGIA----SLSFDSKKDKHAHLYEIMKEA 113 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 T+FF LK +++ YL RG+D I FKLGYAP+ Y R + F + Sbjct: 114 TEFFQIQLK--HNEKALQYLKTRGLDEKIITHFKLGYAPNWSYLSRYLTEETKFEYCDLK 171 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 L+ + + YD F+NRLIFPI + GQ+IAF R+L + KYLNSPET+LF K Sbjct: 172 ALSLVNQNEQTGKFYDFFQNRLIFPITNLNGQIIAFSSRSL-TDQIPKYLNSPETVLFKK 230 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 G+ LY +F ++K IIL EG+ DV+S + GV+NVV+++GT LT+ Sbjct: 231 GEVLYQYFENQAEIRKK----------ETIILHEGFFDVISSFKVGVKNVVATMGTNLTQ 280 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L+LL KL+ +I++ +DGD G ++A + + V + DPD +I+ Sbjct: 281 NHLKLLSKLAQKIIIAYDGDASGKKSA---LSIGNTLQQKNFDVKILDFPNNLDPDEYIK 337 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 G + +L+ + + + + + +D + Y Sbjct: 338 TEGAEKYHQLLTN---HLTDFLTLQIDLICKKISWNNRKKIEKELKMLFQNQDLATKTVY 394 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + Q + + + + K +E Sbjct: 395 QSYLAQKYQLFIDFNVQQQELIIPTLISSQNTINYKK-------------------FDKE 435 Query: 485 AALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI--HQRL 541 +L+ IN+ + ++ YQ + Y + + + + + ++ Sbjct: 436 IHILIEFINNRSFFEKNYQINNDALVYSDVNVSYFIEEIKTYYQNNLLKNSIPWNHLEKN 495 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 L++++ + + + + Y Q K + L + ++ + Sbjct: 496 DNESLHPLIEEIKN-----HHFFQAKISLDQNTFEKYIQDFKNAKTIQELKEEINKL--R 548 Query: 602 IAQVTAKGEAEKTAILIS 619 I + EKT L Sbjct: 549 INIKMHEDLKEKTQYLYQ 566 >gi|294155543|ref|YP_003559927.1| DNA primase [Mycoplasma crocodyli MP145] gi|291599964|gb|ADE19460.1| DNA primase [Mycoplasma crocodyli MP145] Length = 660 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 141/664 (21%), Positives = 267/664 (40%), Gaps = 58/664 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N P++ I D+L I +IG ++ ++ D+ CPFH + TPS + + K Sbjct: 3 NIPQEVIDDILHSSDIVAVIGNFLTLTKKGK-----DFVGLCPFHSDNTPSMNVSSEKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDL 117 + CFSC+V G+ ++FL +IE+++ LA + + + QT + Sbjct: 58 FKCFSCNVGGNAIAFLMKFKNFKYIEAIEYLAKLINYDYDFSNILKVSNKPIYNQTQTLI 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 I ++ A + +++ N D + YLD+RG+ ++ +++F +G+AP ++ Sbjct: 118 IDTLKAANLTYKNNIFN--DDEVKKYLDKRGLTTNILDVFNIGFAP------YNGIKHTL 169 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 E E L G + + + R R+ F I + +G VI F GR++ + KY+NSP Sbjct: 170 IKEFAFNEFELKKAGIINNENNEILRKRITFAISNEQGDVIGFSGRSI-GDDKPKYINSP 228 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET +F K LYN+F A + N II+ EG+MD ++L + V+NVVS Sbjct: 229 ETNVFKKNSILYNYFNAKESI----------NLKKQIIITEGFMDTIALYKCDVKNVVSL 278 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 +G AL+++ L LL ++L D D GL A I + + V V+ + + Sbjct: 279 MGVALSKHHLHLLKN--NEVILFLDNDSAGLNATKSTILM---LIKENINVKVVINNHKK 333 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--INHI 415 DPD + YG + +D ++ ++ + + + + Sbjct: 334 DPDEILNFYGSKTLTDTLNNLTSGIDFIYDLLIKSYGLDKEITSQKAKSFCTEFANYYFL 393 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D LR +++ I L + + + K + D S+ + S+ Sbjct: 394 LDNDLRGFFANKINKSLGFDINSINHNNEVHNNFDNKINSYIDDVKTSEIFLGSNQYNST 453 Query: 476 LSKKPSLR------EAALLLTLINHPAILQEQYQELAD---IRYDNNELQKLWSFLFSDF 526 K ++ L+ +P ++ + + N + S + Sbjct: 454 KQYKNKNVIYNVHPMNIIVKFLLENPKLVSIYFNNSIKPLGLDLKNKYQFAFIQKIKSIY 513 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGYQQAL 582 EEI Q+L + L+ L + + + I+D Y Q Sbjct: 514 E---LVDNEEIKQKLINKLKIIFLRSLSVEYTVDDFDTDCKNSAIIDNYNFNESDYIQEK 570 Query: 583 ALYKRFRLLSRQKEEIEKQIA-QVTAKGE------AEKTAILISILHEVHIQIHQIESQE 635 Y +S + IE + ++G+ + ++ L L ++ ++ +Q Sbjct: 571 RAYDNITTISIDIDAIENIVKGSQDSEGDNKVKNKKDFSSELEKDLRSKLSKVEKMYNQF 630 Query: 636 AMIE 639 A+ E Sbjct: 631 ALKE 634 >gi|203288140|ref|YP_002223155.1| DNA primase [Borrelia recurrentis A1] gi|201085360|gb|ACH94934.1| DNA primase [Borrelia recurrentis A1] Length = 591 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 130/640 (20%), Positives = 242/640 (37%), Gaps = 59/640 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I + + I N+I ++V + Y CPFH E+TPSF S+G Sbjct: 1 MEYAK-IIDLIKQRVDIVNIISEHVSLVKSGA-----FYKGLCPFHAERTPSFTITPSQG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116 +YCF C GD + FL + ++ ++V L G+ + K KI Sbjct: 55 LFYCFGCKKGGDVVKFLMDIEKLNYNDAVDSLCTKIGIEYDSATRSMGIKRKIHDKTLIS 114 Query: 117 -LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173 + L F L N + + + + R + L + S + L Sbjct: 115 EIYNLNAKLIKVFVFFLNNNQKILSYIFQERRISREIVDLFNIGYLLCDVVGKSSFYDFL 174 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 KG+S + ++GL + RLIFPI+ +G V+ FGGR L K KY Sbjct: 175 VSKGYSSSILSKSGLFASRREK---FSILSGRLIFPIKDFKGNVVGFGGRILGKNNGSKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +N ET +F K + LY F+ L+ ++ + IIL EGY+DVL+ AG++ Sbjct: 232 INLSETRVFKKRELLYGFYEGLSMIK----------ETRSIILTEGYIDVLAFFTAGIKI 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VS+LGT+ + L L+ + + +I++CFD D GL A +KA + L V+ + + Sbjct: 282 AVSTLGTSFSTQHLALIKRYADKILICFDDDMAGLVATFKAYQICLPF---NIDVSVIRM 338 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP ++ G + ++ +S + L ++ + N + + N I Sbjct: 339 KYGVDPADVLKNKGVSVLSNMVNDSCDAFEYLLEKYSLKYDLNKTTDLNSMVNLFINLIG 398 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R + +L + ++ +S K Sbjct: 399 LSSTNTQRDLLLLKLESKLGVKLETLRKDYYSMREKK----------------AIASYKK 442 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 S + + E LL+ L+ + + D + +++K++ + F K F Sbjct: 443 NACSYEVNTYERYLLVALLKDFNYFTIIRRNINDSDLYDIDVKKIFVCFENLFDNNKSFS 502 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L + + ++ +V + + + R + Sbjct: 503 LFNLKELLKN-----------KYGSISEIFFENMLRVEFEVDDEMVKQILFAIKKRKVEN 551 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630 + ++ I + + L+ + I +++ Sbjct: 552 RILAFKEMIKNYVSIDAKAQIRELMFLNMQRENLRIYLNE 591 >gi|313158452|gb|EFR57847.1| DNA primase [Alistipes sp. HGB5] Length = 1062 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 125/475 (26%), Positives = 218/475 (45%), Gaps = 34/475 (7%) Query: 3 YPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P I +L I ++IG + V R N Y CCPFH EKTPSF + KG Sbjct: 2 IPEYVIDQILSK-DIVSIIGGEGVSLKRAGVN-----YECCCPFHKEKTPSFKVSPVKGI 55 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 + CF C KG+ +SF+ L +F E+V+ LA + + P+ ++ ++ + Sbjct: 56 FTCFGCSAKGNAISFVMMLYNMTFPEAVEYLAKKLNIEYKAEELTPEQKEARFRRSRIFE 115 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + ++A ++F S K + + + ERG I+ +G+AP + RE+ QKG+ Sbjct: 116 INQIALEYFRESYKQSLPAQKYAT-KERGFKEETIDNMLIGFAP-YKGGFREYATQKGYK 173 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---VKYLNS 236 E+ +I+A L+ + + YD FR RL+F IR G ++ F GR + K KY+N+ Sbjct: 174 EQLLIDADLVRRSERDGSLYDTFRGRLMFTIRDRTGNIVGFSGRLMDKENPKKLPKYINT 233 Query: 237 PETILFHKGKNLYNFFG-ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +T ++ KG++L+ +F A + LVEG D + + Q GV N V Sbjct: 234 GDTAVYKKGEHLFAYFESARQAAA-----------VRTMNLVEGNPDAIRMHQIGVDNTV 282 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + LGTALT Q+ L+ K++ +++ D DD G +A K + +L G V + + Sbjct: 283 APLGTALTPKQIELIKKVADTVIIIGDMDDAGQKAVVKNAETML---RAGLAVRVMEIKD 339 Query: 356 G-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +DPD + R Y K E L + + L + N+ E+ + + + Sbjct: 340 NYKDPDDYFRQYSKGYEELLSNSTTDFIPWLCAH--KMEGKNSQTEQIAVISEVCQLLAL 397 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 +D+ Y + +K T + ++ A+ + ++ S+ ++ Sbjct: 398 CRDESTVNMYLDMFAREYKN--RKIWTAELQKIQLERERAQRKKEESYSEDMISE 450 >gi|15606650|ref|NP_214030.1| DNA primase [Aquifex aeolicus VF5] gi|9910814|sp|O67465|PRIM_AQUAE RecName: Full=DNA primase gi|2983878|gb|AAC07430.1| DNA primase [Aquifex aeolicus VF5] Length = 498 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 140/522 (26%), Positives = 228/522 (43%), Gaps = 42/522 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I +L I I ++I +Y++ ++ +N Y CPFH + TPSF+ + SK + CF Sbjct: 3 SDIDELRREIDIVDVISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCF 57 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C V GD + F+S S+ E+ LA G L +K + ++ Sbjct: 58 GCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKL------DLEKISKDEKVYVALDRVC 111 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 DF+ SL R+ Y+ RGID F LGYAP S ++ K + Sbjct: 112 DFYRESLLKNREASE--YVKSRGIDPKVARKFDLGYAPSSEALVKVL---KENDLLEAYL 166 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 + D F R++ PI+ RG+VI FGGR + + +S KY+NSP++ +F KG Sbjct: 167 ETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDKSPKYINSPDSRVFKKG 226 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305 +NL+ + A Y++ F ILVEGY D+L L G++NVV+ LGTALT+ Sbjct: 227 ENLFGLYEAKEYIK----------EEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQN 276 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 Q LL K + ++ + +DGDD G +A AI L L G V V L G DPD FI+ Sbjct: 277 QANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKE 333 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 +GK +LI S L + L K + E + + I D R+ + Sbjct: 334 FGKEELRRLINSSGELFETLIKTAR--------ENLEEKTREFRYYLGFISDGVRRFALA 385 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + + + + + + +++ + + ++ + Sbjct: 386 SEFHTKYKVPMEILLMKIEKNSQEKEIKLSFKEKIFLKGLIELKPKIDLEVLNLSPELKE 445 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + L +L + + Y + L+KL++ + D Sbjct: 446 LAVNALNGEEHLLPK-----EVLEYQVDNLEKLFNNILRDLQ 482 >gi|203284606|ref|YP_002222346.1| DNA primase [Borrelia duttonii Ly] gi|201084049|gb|ACH93640.1| DNA primase [Borrelia duttonii Ly] Length = 591 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 129/640 (20%), Positives = 240/640 (37%), Gaps = 59/640 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + I + + I N+I ++V + Y CPFH E+TPSF S+G Sbjct: 1 MEYAK-IIDLIKQRVDIVNIISEHVSLVKSGA-----FYKGLCPFHAERTPSFTITPSQG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---- 116 +YCF C GD + FL + ++ ++V L G+ + K KI Sbjct: 55 LFYCFGCKKGGDVVKFLMDIEKLNYNDAVDSLCTKIGIEYDSATRSMGIKRKIHDKTLIS 114 Query: 117 -LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS--HAIEMFKLGYAPDSRYSLREHL 173 + L F L N + + + R + L + S + L Sbjct: 115 EIYNLNAKLIKVFVFFLNNNQKILSYILQERRISREIVDLFNIGYLLCDVVGKSSFYDFL 174 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 KG+S + ++GL + RLIFPI+ +G V+ FGGR L K KY Sbjct: 175 VSKGYSSSILSKSGLFASRREK---FSILSGRLIFPIKDFKGNVVGFGGRILGKNNGSKY 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +N ET +F K + LY F+ L+ ++ + IIL EGY+DVL+ A ++ Sbjct: 232 INLSETRVFKKRELLYGFYEGLSMIK----------ETRSIILTEGYIDVLAFFTADIKI 281 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 VS+LGT+ + L L+ + + +I++CFD D GL A +KA + L V+ + + Sbjct: 282 AVSTLGTSFSTQHLALIKRYADKILICFDDDMAGLVATFKAYQICLPF---NIDVSVIRM 338 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP ++ G + ++ +S + L ++ + N + + N I Sbjct: 339 KYGVDPADVLKNKGVSVLSNMVNDSCDAFEYLLEKYSLKYDLNKTTDLNSMVNLFINLIG 398 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R + +L + ++ +S K Sbjct: 399 LSSTNTQRDLLLSKLESKLGVKLETLRKDYYSMREKK----------------AIASYKK 442 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 S + + E LL+ L+ + + D + +++K++ + F K F Sbjct: 443 NACSYEVNTYERYLLVALLKDFNYFTIIRRNINDSDLYDIDVKKIFVCFENLFDNNKSFS 502 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L + + ++ +V + + + R + Sbjct: 503 LFNLKELLKN-----------KYGSISEIFFENMLRVEFEVDDEMVKQILFAIKKRKVEN 551 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILI---SILHEVHIQIHQ 630 + ++ I + + L+ + I +++ Sbjct: 552 RILAFKEMIKNYVSIDAKAQIRELMFLNMQRENLRIYLNE 591 >gi|218249623|ref|YP_002375210.1| hypothetical protein BbuZS7_0733 [Borrelia burgdorferi ZS7] gi|218164811|gb|ACK74872.1| conserved hypothetical protein [Borrelia burgdorferi ZS7] Length = 593 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 127/599 (21%), Positives = 236/599 (39%), Gaps = 50/599 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y + + + I ++ QY+ + + Y CPFH EKTPSF N +G Sbjct: 1 MKYLQ-TVASIKSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQT 115 ++YCF C GD + FL + ++ ++++ L +G+ + + + + + Sbjct: 55 YFYCFGCKKGGDVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVS 114 Query: 116 DLIRLIEV---ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L FF + K L Y L R I +++F+LGY P + + E Sbjct: 115 KIYSLNSRLINTIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLEL 170 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + RLIFPI+ +G V+ FGGR L G+ K Sbjct: 171 HDFLVSKGYSSEVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSK 229 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+N ET +F K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ Sbjct: 230 YINLGETEVFKKRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIK 279 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 VS+LGTA ++ L L+ + + I+ FDGDD GL A KA + L V+ V Sbjct: 280 RAVSTLGTAFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVR 336 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + G DP ++ G + +K++ + L + N + + N I Sbjct: 337 MDFGTDPADILKSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLI 396 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 N K + + + ++L + ++ + + R+ + Sbjct: 397 NLSKVDTQKKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY----- 451 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 E L++ L+ + + + + D N + +K++ + F K F Sbjct: 452 -----------ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDF 500 Query: 533 LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ + L + + +++ + + R+ + L KR+ Sbjct: 501 SLMDLKKNLKDTYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|299142809|ref|ZP_07035937.1| CHC2 zinc finger protein [Prevotella oris C735] gi|298575677|gb|EFI47555.1| CHC2 zinc finger protein [Prevotella oris C735] Length = 1106 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 104/470 (22%), Positives = 193/470 (41%), Gaps = 61/470 (12%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + + I +++ YVD + N Y CPFH + TPSF + +KG Sbjct: 2 ISKQTIDRVFNRVNIVDVVSDYVDLKKSGVN-----YKGLCPFHHDHTPSFVVSPAKGIA 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118 +CF C G+ + F+ G +F E++ +LA + + K +E + + + Sbjct: 57 HCFVCGGGGNAVKFVMQKEGYTFPEAICKLAKKYNIEVEEDTEKRSDEELRVMQKRESMF 116 Query: 119 RLIEVATDFFHHSLK--NARDKRLHYYLDERGID-----------------SHAIEMFKL 159 + E T F+ +K A+ K Y++ R E+ ++ Sbjct: 117 IIYEAVTQFYREQIKKDTAQAKAAREYVERRWNSRVVVDDKKKKKTFDDEDRDFSEIKQI 176 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 GYAPD+ +L R KG+ + + EAGL I + D +RNR++ PI G+VIA Sbjct: 177 GYAPDAWDALVNFARAKGYDLKLMEEAGL-IKVSSKGNLIDFYRNRIMIPITDKYGRVIA 235 Query: 220 FGGRTLSKG-ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 F RT+ ++ KY+N+ ++ ++ KG L+ A N + + VE Sbjct: 236 FTARTMQDDADTAKYINNKDSFMYSKGSTLFGLDIARNEA----------IQQNKVYCVE 285 Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR------IVLCFDGDDPGLRA-- 330 G D + L ++N V++LGTA T+ ++L +L + + D D ++ Sbjct: 286 GAPDAMKLQSLRIENTVAALGTAWTKAHFQVLRRLFGKSNSNATVCWIPDSDQKAGQSLG 345 Query: 331 --AYKAIDLVLCHLIPGNRVNFVLLSRGE-----DPDSFIRCYGKTAFEKLIVESLPLVD 383 + + G RV + + + D DS+I + L + P+ Sbjct: 346 PGFLAVMKNGKLAMEEGFRVTVKEIPQEKVGMKADADSYISSKAV--LDDLEEQDFPI-- 401 Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 W E + + ER + + + I D+ + + + + ++ Sbjct: 402 --WYAEKVLKKDDNTSERTDKIKEVCAIVILISDEYTQNAFIEKLANKFG 449 >gi|216263403|ref|ZP_03435398.1| conserved hypothetical protein [Borrelia afzelii ACA-1] gi|215980247|gb|EEC21068.1| conserved hypothetical protein [Borrelia afzelii ACA-1] Length = 593 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 136/608 (22%), Positives = 255/608 (41%), Gaps = 57/608 (9%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKS 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV-- 123 GD + FL + ++ ++++ L GV + K + + I + + L Sbjct: 65 GDVIGFLMDMEKINYNDALKILCEKFGVYYDDLKISRESVKKNENKDIVSKIYSLNSRLI 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR---QKGFS 179 FF N K L Y L R I +++F+LGY P + E KG+S Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + A+ RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 SEILKKSGLFSKINPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ L+ ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGLDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + I+ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLVLIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+++ ++++ + D L + N + + N IN K Sbjct: 344 ADVLKSEGESSLQEILNNRCDVFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDA 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + +D +R+ + + + Sbjct: 404 QKNIFLDKLSNKLGIGVTTLL----------------KDYYRIKERVAVDNNKRNLYAHN 447 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + + +K++ + F + F ++ + Sbjct: 448 DDSYERYLIVALLKNFSYFSIIRRNIIDSDLIDVDARKIFMCFENLFENNEDFSLMDLKR 507 Query: 540 RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + + +++ + + + R+ + L + R + Sbjct: 508 NLKDNYKISEFFFEEILNSEFEVDDETLVHVLLAIKRRK--LDSRVLLCKKRCIEDSLVN 565 Query: 598 IEKQIAQV 605 + QI ++ Sbjct: 566 AKIQINEL 573 >gi|15595055|ref|NP_212844.1| DNA primase (dnaG) [Borrelia burgdorferi B31] gi|9910812|sp|O51653|PRIM_BORBU RecName: Full=DNA primase gi|2688648|gb|AAC67062.1| DNA primase (dnaG) [Borrelia burgdorferi B31] Length = 523 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 127/543 (23%), Positives = 230/543 (42%), Gaps = 53/543 (9%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFSE 180 FF + K L Y L R I +++F+LGY P + + + L KG+S Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + ++GL + RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 182 EVLRKSGLFSKTNPK---VSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETE 237 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGT Sbjct: 238 VFKKRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGT 287 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 A ++ L L+ + + I+ FDGDD GL A KA + L V+ V + G DP Sbjct: 288 AFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPA 344 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ G + +K++ + L + + N + + N IN K Sbjct: 345 DVLKSEGVDSLQKILNNRCDAFEYLLDVYSNKYNLNKTVDLNAMINLFLNLINLSKVDTQ 404 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + ++L + ++ + + R+ + Sbjct: 405 KKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------- 451 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E L++ L+ + + + + D N + +K++ + F K F ++ + Sbjct: 452 ---ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKN 508 Query: 541 LCE 543 L + Sbjct: 509 LKD 511 >gi|111115541|ref|YP_710159.1| DNA primase [Borrelia afzelii PKo] gi|110890815|gb|ABH01983.1| DNA primase [Borrelia afzelii PKo] Length = 593 Score = 247 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 135/608 (22%), Positives = 254/608 (41%), Gaps = 57/608 (9%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKS 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV-- 123 GD + FL + ++ ++++ L GV + K + + I + + L Sbjct: 65 GDVIGFLMDMEKINYNDALKILCEKFGVYYDDLKISRESVKKNENKDIVSKIYSLNSRLI 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR---QKGFS 179 FF N K L Y L R I +++F+LGY P + E KG+S Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + A+ RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 SEILKKSGLFSKINPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ L+ ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGLDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + I+ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLVLIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+++ ++++ + D L + N + + N IN K Sbjct: 344 ADVLKSEGESSLQEILNNRCDVFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDA 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + ++ + + R+ + Sbjct: 404 QKNIFLDKLSNKLGIGVTTLLKDYYRIKERFAVDNNKRNLYAHNDDSY------------ 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + + +K++ + F + F ++ + Sbjct: 452 ----ERYLIVALLKNFSYFSIIRRNIIDSDLIDVDARKIFMCFENLFENNEDFSLMDLKR 507 Query: 540 RLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + + +++ + + + R+ + L + R + Sbjct: 508 NLKDNYKISEFFFEEILNSEFEVDDETLVHVLLAIKRRK--LDSRVLLCKKRCVEDSLVN 565 Query: 598 IEKQIAQV 605 + QI ++ Sbjct: 566 AKIQINEL 573 >gi|224533386|ref|ZP_03673980.1| DNA primase [Borrelia burgdorferi CA-11.2a] gi|224513551|gb|EEF83908.1| DNA primase [Borrelia burgdorferi CA-11.2a] Length = 593 Score = 246 bits (628), Expect = 7e-63, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KKEILYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559 >gi|312149455|gb|ADQ29526.1| DNA primase [Borrelia burgdorferi N40] Length = 593 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ ++L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKKLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|224532357|ref|ZP_03672987.1| DNA primase [Borrelia burgdorferi WI91-23] gi|224512664|gb|EEF83035.1| DNA primase [Borrelia burgdorferi WI91-23] Length = 593 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 129/632 (20%), Positives = 246/632 (38%), Gaps = 69/632 (10%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VVS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRVVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + +++ + L + R+K + Sbjct: 512 TYKVSEFFFEEILNS-------------------EFEVDDEMLIHILLAIKRRKLDFRVL 552 Query: 602 IAQVTAKGEAEKTAILI-SILHEVHIQIHQIE 632 +++ G++ A + + L +++Q ++ Sbjct: 553 LSKKRYDGDSLVNAKIQINELMFLNMQRKNLK 584 >gi|225548888|ref|ZP_03769865.1| DNA primase [Borrelia burgdorferi 94a] gi|225370491|gb|EEG99927.1| DNA primase [Borrelia burgdorferi 94a] Length = 593 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559 >gi|262376645|ref|ZP_06069873.1| DNA primase [Acinetobacter lwoffii SH145] gi|262308355|gb|EEY89490.1| DNA primase [Acinetobacter lwoffii SH145] Length = 640 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 141/685 (20%), Positives = 261/685 (38%), Gaps = 116/685 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P+ I +L I ++IGQ+V + Y CCPFH EK+PSFH K Sbjct: 1 MAIPQHTIDQILDRTDIVDVIGQFVKLKKTGR-----TYSGCCPFHQEKSPSFHVYRDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI-- 118 +++CF C G+ + FL + +F+E ++ L++ G+ LP + K + + Sbjct: 56 YFHCFGCQANGNAIRFLMDIGSRNFVEVMKDLSSQTGIELPKDNTDSNKLKYKREAAKPK 115 Query: 119 -------------------RLIEVA--------TDF------FHHSLKNARDKRLHYYLD 145 A +F F+ + + + Sbjct: 116 IAPAQAAPQAQPQQNNAPTENNSAASTASFDPFAEFQAVEQDFYGDPFASFEHLPMAEVQ 175 Query: 146 ERGIDSHAIEMFKLGYA--PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 + G +E Y + S +++ +Q+G + E I L ++ F Sbjct: 176 QDGNLYDLLENIAQFYERQLPNSPSAQQYFKQRGLTTETIAYWRLGYAPEDWQHLEKAFP 235 Query: 204 NRL------IFPIRSSRGQ------------VIAFGGRT-------LSKGESVKYLNSPE 238 + S G+ + GR L+ KY+NSP+ Sbjct: 236 QDIEGLKLLGLIRTSDSGRDFDLLRERVIFPIRDTKGRVVGFGGRALNDEIKPKYINSPD 295 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 + +FHK + LY + + ++VEGYMDV++L Q G+ V++L Sbjct: 296 SEVFHKNQLLYGLYEGRK------------QKAQEWLMVEGYMDVIALQQYGIHGAVATL 343 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 GTA L +L+K S R+ + FDGD G +AA + +D+ L L G + F +L D Sbjct: 344 GTASNTDHLNILFKQSNRLTIAFDGDAAGQKAARRTLDIALPLLNDGRELKFFVLPADHD 403 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-D 417 PDS IR G F +L+ ++ + D ++ T+N+ TP+ ++++ LKN + Sbjct: 404 PDSLIRREGIENFRRLLEQAPLMSDFVFAHLTQNQDITTPEGKSQVMGELKNLTELLPKH 463 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 RY Q R++L G+ R W+ S ++ Sbjct: 464 GSFRYLLQQFFREKL------------GFNRKWQPKVNTDASLSFSTKID---------- 501 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E ++ L+NHP + ++ L + ++ L K+ + + + + PE Sbjct: 502 -----AEEYVIAILMNHPYLYI-HFEPLRALVAEDQLLFKILN-ILNVIFDDLPDDPELS 554 Query: 538 HQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVR---QGYQQALALYKRFRLLS 592 + L+ + + + S+ +A+ + + Q L + + S Sbjct: 555 IYYVLGACAAHHHELQHILQHANVSDYTSSPEQADKLAADFSTKLQYQCLKNKIKSKKFS 614 Query: 593 --RQKEEIEKQIAQVTAKGEAEKTA 615 + + ++ QI ++ K Sbjct: 615 SIAEMKNLKMQIYEIDRKRSMTLLE 639 >gi|216264439|ref|ZP_03436431.1| conserved hypothetical protein [Borrelia burgdorferi 156a] gi|215980912|gb|EEC21719.1| conserved hypothetical protein [Borrelia burgdorferi 156a] Length = 593 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|57506128|ref|ZP_00372050.1| DNA primase [Campylobacter upsaliensis RM3195] gi|57015612|gb|EAL52404.1| DNA primase [Campylobacter upsaliensis RM3195] Length = 595 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 142/612 (23%), Positives = 247/612 (40%), Gaps = 47/612 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L I ++I +V R Y CPFH ++ PS H N K FY Sbjct: 2 IAKDSIELLSQRADILSIISHFVQVRRSGA-----SYVCVCPFHGDRNPSLHINTQKNFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD F+ +F E+V+++A ++ L K E K++I+ L L Sbjct: 57 HCFGCGAGGDVFKFVMDFERVNFAEAVEKVAHLSNFTLTYTKEKEENKKEIKHILPLLNA 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ +L A+ + + YL +R + I+ F+LGYA S L+ + S E Sbjct: 117 ----FYKQNL--AKHREVLDYLYQRKLSDEDIKKFELGYAT-SNDESLRLLKNEQISNED 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + G I D Y F +R+ FPI +G ++ FGGRTL+ + KY+NSP++ LF Sbjct: 170 ALYVG-AIKKDEKGGFYASFIHRITFPIYDYKGLLVGFGGRTLNANNAAKYVNSPQSPLF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + + K +I+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKARIFYAFHLAKDSIAKQ----------REMIICEGYMDAIAFHKAGFTNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ G +AA+++ L+ + I G VLL G+DP Sbjct: 279 TEHHLPLIRRYEAKVLLCFDNDEAGRKAAFRSAFLLSVNKIDGK---VVLLEGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + L+ ++ L + + + D++ L + + Sbjct: 336 VANDEAKKLHALLERAMELGEFYIRELLRGEIHSALDKQKAL--ESVQKYTFSLEPLVAN 393 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + L + + + + R+ L + S Sbjct: 394 SYTNLVSKLLG-----VEKNLIVLSKNTSRPPKTPLLETQKSRVHLGELELLSFLRASSE 448 Query: 483 REAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 A L + H + ++ LA+ ++ ++++L + Sbjct: 449 ARALFLTMSDKSCFKHQKLCEKV---LANFGLEDKDIREL-----ELRNLGTITNLNDFL 500 Query: 539 QRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 LC+ L + + + N +++ + LS K Sbjct: 501 CLLCKINLAFFNALTITKPHLGLKKQLLSLLDKNAEKLKKQLDENALFEFYKDALSFIKS 560 Query: 597 EIEKQIAQVTAK 608 E + QI + K Sbjct: 561 EKDTQILETRLK 572 >gi|225551851|ref|ZP_03772794.1| DNA primase [Borrelia sp. SV1] gi|225371646|gb|EEH01073.1| DNA primase [Borrelia sp. SV1] Length = 593 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 126/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ L ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGLEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADVL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G +K++ + L + N + + N IN K + Sbjct: 348 KSEGVDFLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ ++L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKKLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEIFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYE 559 >gi|226320453|ref|ZP_03796019.1| DNA primase [Borrelia burgdorferi 29805] gi|226234095|gb|EEH32810.1| DNA primase [Borrelia burgdorferi 29805] Length = 593 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 232/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGNENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGSDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKIFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|221217978|ref|ZP_03589445.1| DNA primase [Borrelia burgdorferi 72a] gi|225549987|ref|ZP_03770948.1| DNA primase [Borrelia burgdorferi 118a] gi|226321408|ref|ZP_03796935.1| DNA primase [Borrelia burgdorferi Bol26] gi|221192284|gb|EEE18504.1| DNA primase [Borrelia burgdorferi 72a] gi|225369446|gb|EEG98898.1| DNA primase [Borrelia burgdorferi 118a] gi|226233204|gb|EEH31956.1| DNA primase [Borrelia burgdorferi Bol26] Length = 593 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSKGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|223889341|ref|ZP_03623927.1| DNA primase [Borrelia burgdorferi 64b] gi|223885027|gb|EEF56131.1| DNA primase [Borrelia burgdorferi 64b] Length = 593 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 231/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADIL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + ++ + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|331703465|ref|YP_004400152.1| DNA primase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802020|emb|CBW54174.1| DNA primase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 612 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 127/640 (19%), Positives = 252/640 (39%), Gaps = 45/640 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +++ + I ++I Y+ ++ +N Y A CPFH++ PS + K Y Sbjct: 4 ISNEKINEIISQVSIVDVISSYLHLIKKGSN-----YLAICPFHNDSNPSLTISPEKRIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 CFSC G+ ++F+ F+ +++ + A + L + K+ + +L Sbjct: 59 TCFSCKASGNVINFVKDFEHVDFLTALKTVCDKANISLDEFKNYNQPIKDLEAETIFKLN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A + F +L + + YL R I I+ F++G+A D ++ L K ++ Sbjct: 119 SEANNIFKTTLFSNLGIQALEYLKSRNISIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I +A L I ++ Y F NR+IFPI+ QVI F GR+ +K KYLN+ E + Sbjct: 178 DIEKANLGIITNSYTKDY--FINRIIFPIKDENNQVIGFSGRSFTKDNEPKYLNTKENKV 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K YN AL + + II++EG+MDV+SL + + N ++ +GT+ Sbjct: 236 FKKSHLAYNITSALKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ Y L L + + ++L DGDDPG++ I + L V + DPD Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + +++I + + V+ L ++ N P++ + N I + ++ L Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIEKLWNKVDINNPNQIENFIKKVLNFIFDLNNEILV 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------RHRDQKGPSQRLMQSS 470 + + + Q + K N + Q + + Sbjct: 402 ETTINKLVELTKISEQTIKNNLIELKKQSKPNNSFNKNSTTQVFKTNTQTNKVNKQHSKT 461 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529 + K+ E + ++L+ L + + + + +++ L + + ++ Sbjct: 462 KPNDFIKKEYINAERRIFISLLISDQFLDKIAANVDKM--IHPDIKHATINLINLYNKKI 519 Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L E K+ + + ++ L S +R+ Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++K + + K E + I L + Sbjct: 573 YHNDTEISNLKKLLVESKNKTERFQIWNGIDTLKNKKKKR 612 >gi|195941529|ref|ZP_03086911.1| DNA primase [Borrelia burgdorferi 80a] Length = 593 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 230/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADVL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNTMINLFLNLINLSKLDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + + + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDCYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLCKKRYD 559 >gi|315638036|ref|ZP_07893221.1| DNA primase [Campylobacter upsaliensis JV21] gi|315481884|gb|EFU72503.1| DNA primase [Campylobacter upsaliensis JV21] Length = 595 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 142/609 (23%), Positives = 251/609 (41%), Gaps = 50/609 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 +D I+ L I ++I +V R Y CPFHD++ PS H N K FY Sbjct: 2 IAKDSIELLSQRADILSIISHFVQVRRSGA-----SYVCVCPFHDDRNPSLHINTQKNFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD F+ +F E+V+++A ++ L K E K++I+ L L Sbjct: 57 HCFGCGAGGDVFKFVMDFERVNFAEAVEKVAHLSNFTLTYTKEKEENKKEIKHILPLLNA 116 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 F+ +L A+ + + YL +R + I+ F+LGYA S L+ + S E Sbjct: 117 ----FYKQNL--AKHREVLDYLYQRKLSDEDIKKFELGYAA-SNDESLRLLKNEQISNED 169 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + G I D Y F +R+ FPI +G ++ FGGRTL+ + KY+NSP++ LF Sbjct: 170 ALYVG-AIKKDERGGFYASFIHRITFPIYDYKGLLVGFGGRTLNANNAAKYVNSPQSPLF 228 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + Y F A + + K +I+ EGYMD ++ +AG N V+ LGTAL Sbjct: 229 DKARIFYAFHLAKDSIAKQ----------REMIICEGYMDAIAFHKAGFTNAVAVLGTAL 278 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 TE+ L L+ + +++LCFD D+ G +AA+++ L+ + I G VLL G+DP Sbjct: 279 TEHHLPLIRRYEAKVLLCFDNDEAGRKAAFRSAFLLSVNKIEGK---VVLLEGGKDPAEL 335 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + L+ ++ L + + + ++ L + + Sbjct: 336 VANDEAKKLHALLERAMELGEFYIRELLRGEIHSALAKQKAL--ESVQKYTFSLEPLVAN 393 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y+ + L + + + + R+ L + S Sbjct: 394 SYTNLVSKLLG-----VEKNLIVLSKNASRPPKTPLLETQKSRVHLGELELLSFLRASSE 448 Query: 483 REAALLLT----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 A L H + ++ LA+ ++ ++++L L + + Sbjct: 449 ARALFLTMSDKSCFKHQKLCEKV---LANFGLEDKDIREL--ELRNLGTITNLNDFLCLL 503 Query: 539 QRLCERGFGEL--------LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 ++ F L LK+ + D + + + + Y++AL+ K R Sbjct: 504 CKINLAFFNALTITKPHLGLKKQLLSLLDKNAEKLKKQLDENALFEFYKEALSFIKSERD 563 Query: 591 LSRQKEEIE 599 + ++ Sbjct: 564 TQILETRLK 572 >gi|312148380|gb|ADQ31039.1| DNA primase [Borrelia burgdorferi JD1] Length = 593 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 230/588 (39%), Gaps = 49/588 (8%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C G Sbjct: 11 KSKFDIVAIVEQYIKLVKSGS-----AYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKGG 65 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVDPKIEKKEKIQTDLIRLIEV--- 123 D + FL + ++ ++++ L +G+ + + + + + + L Sbjct: 66 DVIGFLMDMEKINYNDALKILCEKSGIHYDDLKISRGSENKNENKDMVSKIYSLNSRLIN 125 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 FF + K L Y L R I +++F+LGY P + + E Sbjct: 126 TIKFF----LSKNKKALDYVLKSRAISKEIVDLFELGYLPFNFKNGLELHDFLVSKGYSS 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 182 EVLRKSGLFSKTNPKVSILFQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLGETEVFK 240 Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303 K + LY F+ ++ S+ +ILVEGY+DVL+ +G++ VS+LGTA + Sbjct: 241 KRELLYGFYEGFEEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLGTAFS 290 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L L+ + + I+ FDGDD GL A KA + L V+ V + G DP + Sbjct: 291 KEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVRMDFGTDPADVL 347 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + G + +K++ + L + N + + N IN K + Sbjct: 348 KSEGVDSLQKILNNRCDAFEYLLDVYSNKYDLNKTVDLNTMINLFLNLINLSKVDTQKKI 407 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++L + + + + R+ + Sbjct: 408 FLDKLSNKLGIGVTTLLKDCYRIKERFVVDNNKRNLYAHNDDSY---------------- 451 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L++ L+ + + + + D N + +K++ + F K F ++ + L + Sbjct: 452 ERYLIVALLKNFSYFSIVRRNIIDSDLINVDARKVFMCFENLFENNKDFSLMDLKKNLKD 511 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +++ + + R+ + L KR+ Sbjct: 512 TYKVSEFFFEEILNSEFEVDDEMLIHILLAIKRRKLDSRVLLSKKRYD 559 >gi|330984018|gb|EGH82121.1| DNA primase [Pseudomonas syringae pv. lachrymans str. M301315] Length = 629 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 130/633 (20%), Positives = 233/633 (36%), Gaps = 42/633 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+D I ++ +S +I +Y+ ++ D+ CPFH E +PSF + K FY Sbjct: 23 IPQDIIDRIVSQTDLSEIISRYIKLKKQGA-----DFIGLCPFHREMSPSFTVSPRKQFY 77 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 YCF C G+ L F+ L +FI +Q L+ G+ + +K++ + + + Sbjct: 78 YCFGCGAGGNTLDFMKEYLNKTFIPVIQELSEEVGIDITPYLKSAQKEQLDFQ-IPQALA 136 Query: 123 VATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A +FF + L YL R + + E F LG+A + ++ Sbjct: 137 DAQNFFRNELLRNHTDVAVATEYLASRHVSAELSERFGLGFAGYGKRAIDALTEHHEVLI 196 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 E + + + + + FR+RL+ P+R RG+VI GRTL KY NS E+ Sbjct: 197 EIGLL-----QRNENGSMFSLFRDRLMMPVRDMRGKVIGVSGRTLDPEVKPKYRNSKESA 251 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LF + LY + ++ + +VEG DVL+ + +++G+ Sbjct: 252 LFSRNSVLYGLYESMQA-------YGNSGKIDRVFVVEGQFDVLANHMLDLA-ACAAMGS 303 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSRGEDP 359 +++ QLRLL + + R+ FDGD G +A + L+ + + L G DP Sbjct: 304 SVSVQQLRLLLRHARRVSFLFDGDQAGRKALIQVGTLLLENITDHEVIFDVLTLPEGVDP 363 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + + ++ +S P ++ T RAE + I+ +D Sbjct: 364 HNMV-TEQPDLYRSMLEQSQPWLEAFMSALANGHDLATDRGRAEYASSALDIIHDTRDPL 422 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSK 478 LR+ Q + F + ++Q S RL + + + Sbjct: 423 LRHQAVQKLAANAGLPFDALEERLKSMPAARSGFLKPQEQLNDASIRLARILWDEPLWAS 482 Query: 479 KPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + L E Q LA I + L + S +E L + Sbjct: 483 HIEETQLWL--------EEGDEIIQTLAAWKIDLFSGALDAMPSAEEQRLIESNADLAAD 534 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I +G L + ++ L + R ALAL+ + Sbjct: 535 ITLNCRNKGGAAALGRRLSGLQGGRLMESLMRDEPETSRAT-AHALALHITGICAGNGLQ 593 Query: 597 EIEK--QIAQVTAKGEAEKTAILISILHEVHIQ 627 + K + + G + L + + Sbjct: 594 SLSKTAALGALDDTG-----REKFNSLMRIRRE 621 >gi|294673681|ref|YP_003574297.1| DNA primase [Prevotella ruminicola 23] gi|294472363|gb|ADE81752.1| putative DNA primase [Prevotella ruminicola 23] Length = 1064 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 109/482 (22%), Positives = 195/482 (40%), Gaps = 41/482 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + PI +++ Y+ + N Y CPFH +K PSF + +KG Sbjct: 2 IKPETLDKINDQ-PIVDIVSDYITLKKAGVN-----YKGICPFHADKNPSFMVSPAKGIC 55 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120 +CF C G+ + F+ +F E+ + +A + DP E+ +++ + + + Sbjct: 56 HCFVCGKGGNGIHFIMEHEHVNFYEACKIIANKFNIEFEEKDPTPEELAEQQKKESMQVI 115 Query: 121 IEVATDFFHHSLKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +F+ L + + AIE LGYAP + ++ G S Sbjct: 116 YSRVQEFYVKCLHEDTPEAKAMMAYAKHRWSEEAIEERGLGYAPKGNKRFFDFIKSTGLS 175 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPE 238 E EAGL I + + Y FR+RL+ P+R G VI + RTLS + KYLN + Sbjct: 176 WELCKEAGL-IAESDDRSEYAFFRDRLMIPVRDRWGNVINYTARTLSDNKDVQKYLNGRD 234 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 ++LFHK L+ A+ + LVEG DV+ + Q GV N V+ L Sbjct: 235 SLLFHKSSVLFGLDTAMKVGAR----------EELFYLVEGGPDVMKMQQIGVVNTVAPL 284 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA----IDLVLCHLIPGNRVNFVLLS 354 GTALT+ L L + P++ D D PG++A K ++ + Sbjct: 285 GTALTKEHLHTLKRFHPKLCFIPDADAPGIKAVIKNGRTAMEEGFRVTVKEIPPKPEEEG 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G+ ++ + + L + + N+ F+ + ++ E + + + Sbjct: 345 GGK--------QDADSYFQNREQVKLLAEEDFVLWYANKLFDDIERKSSTETDISDIVKQ 396 Query: 415 IKDQKL--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 I D + + Y+Q L + +H+G+ WK + ++ ++ Sbjct: 397 ICDVLILEKDEYTQK------ALLDALVKQHNGHKGLWKNAVNEAKHRRAEEKAKATTKR 450 Query: 473 KG 474 G Sbjct: 451 TG 452 >gi|256384214|gb|ACU78784.1| DNA primase [Mycoplasma mycoides subsp. capri str. GM12] gi|256385046|gb|ACU79615.1| DNA primase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455356|gb|ADH21591.1| DNA primase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 612 Score = 244 bits (622), Expect = 3e-62, Method: Composition-based stats. Identities = 128/640 (20%), Positives = 252/640 (39%), Gaps = 45/640 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +++ + I ++I Y+ ++ +N Y A CPFH++ PS + K Y Sbjct: 4 ISNEKINEIISQVSIVDVISSYLHLIKKGSN-----YLAICPFHNDSNPSLTISPEKRIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 CFSC G+ ++F+ F+ +++ + A + L + K+ + +L Sbjct: 59 TCFSCKASGNVINFVKDFEHVEFLTALKTVCDKANISLDEFKNYNQPIKDLEAETIFKLN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A + F +L + + YL R I I+ F++G+A D ++ L K ++ Sbjct: 119 SEANNIFKTTLFSNLGIQALEYLKSRNITIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I +A L I ++ Y F NR+IFPI+ QVI F GR+ +K KYLN+ E + Sbjct: 178 DIEKANLGIITNSYTKDY--FINRIIFPIKDENNQVIGFSGRSFTKDNEPKYLNTKENKV 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K YN AL + + II++EG+MDV+SL + + N ++ +GT+ Sbjct: 236 FKKSHLAYNIASALKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ Y L L + + ++L DGDDPG++ I + L V + DPD Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + +++I + + V+ L ++ N P++ + N I + ++ L Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIEKLWNKVDINNPNQIENFIKKVLNFIFDLNNEILV 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----------RHRDQKGPSQRLMQSS 470 + + + Q + K N + Q + S Sbjct: 402 ETTINKLVELTKISEQTIKNNLIELKKQSKPNNSFNKNSTTQVFKTNTQTNKVNKQQSKS 461 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529 + K+ E + ++L+ L + + + + +++ L + + ++ Sbjct: 462 KPNDFIKKEYINAERRIFISLLISDQFLDKIAANVDKM--IHPDIKHATINLINLYNKKI 519 Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L E K+ + + ++ L S +R+ Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++K + + K E + I L + Sbjct: 573 YHNDTEISNLKKLLVESKNKTERFQIWNGIDTLKNKKKKR 612 >gi|220916245|ref|YP_002491549.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1] gi|219954099|gb|ACL64483.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-1] Length = 454 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 118/468 (25%), Positives = 193/468 (41%), Gaps = 29/468 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D I+++ LIG V + Y CPFH+E+ SF + Sbjct: 2 ISPDIIEEVKRLADPVVLIGARVRLWKSG-----IAYAGSCPFHEERQASFRVYPKDKHF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK---IQTDLIR 119 C+ C GD F G +F V+ LAA G+ +P P ++++ + L+ Sbjct: 57 VCYGCGASGDIFQFFQRADGKAFPTVVRELAASLGIVIPPERPATAQEQRERGERASLLA 116 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E A + +L + ++ YL ER + A F+LG+A + L L + Sbjct: 117 ACEAAMSHWQRNLWGSEGEKAREYLAERRVTDEAARAFRLGFARPDWHDLERALGAAKIA 176 Query: 180 EEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 AG++ + +DRFR+R++FPI +G+V FG RTL KYLN Sbjct: 177 HAVQHAAGVITSREVPGKGVRYHDRFRDRVVFPIEDIQGRVTGFGARTLGAEPEAKYLNG 236 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET LF K + L+ A + ++ + R +LVEGY DV++L QAG + V+ Sbjct: 237 PETPLFKKSRVLFGLRQARDVIRSTGRA----------LLVEGYFDVIALHQAGFTSAVA 286 Query: 297 SLGTALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + GT L+ Q+ L +VL FDGD+ G AA +A ++L + S Sbjct: 287 ACGTTLSREQVEQLAGAGCMELVLLFDGDEGGALAAARAARVLLQANLSATVARVPTSSH 346 Query: 356 G--EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR-----SFNTPDERAELEIHL 408 G DPD + G+ E+++ + PL + L + + + + + Sbjct: 347 GGQSDPDVLVARSGRRGMEEVLAAAKPLTEFLIDDAVQRHADGIGVQAPVEHKLAVLRAV 406 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 + D R + +A+ RL E R + + Sbjct: 407 MPFVLATPDGLPRATFERAVARRLGIDIGPLRQELQRAARTERPGSHP 454 >gi|224534601|ref|ZP_03675177.1| DNA primase [Borrelia spielmanii A14S] gi|224514278|gb|EEF84596.1| DNA primase [Borrelia spielmanii A14S] Length = 593 Score = 244 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 127/604 (21%), Positives = 236/604 (39%), Gaps = 54/604 (8%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKTKFDIVAVVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKG 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIEV----- 123 GD + FL + ++ +++ L G+ + + KK + + ++ + + Sbjct: 65 GDVIGFLMDMEKINYNNALKILCEKFGIYYDDLKISRESLKKNENKDIILEIYSLNSRLV 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 FF N K L Y L R I +++F+LGY P + E Sbjct: 125 NTIKFF----LNKNKKALDYILKSRAISKEVVDLFELGYLPLNVKDGLELHGFLVSKGYS 180 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + RLIFPI+ +G V+ FGGR L G+ KY+N ET +F Sbjct: 181 FEILRKSGLFSKANPKASILSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSETEVF 239 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K + LY F+ L+ ++ S+ IILVEGY+DVL+ +G++ VS+LGT+ Sbjct: 240 KKKELLYGFYEGLDEIK----------STKSIILVEGYIDVLAFFTSGIKRAVSTLGTSF 289 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 ++ L L+ + + ++ FD DD GL A KA + L V+ V + G DP Sbjct: 290 SKEHLALIQRYADEVIFSFDSDDAGLSATLKAYQICLPF---NINVSVVKMDFGRDPADV 346 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ GK ++++ D L + N + + N IN K + Sbjct: 347 LKSEGKDFLQEILNNRCDAFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKVDTQKK 406 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + ++L + ++ + + R+ + Sbjct: 407 IFLDKLSNKLGIGVAILLKDYYRIKERFAVDNNKRNLYAHNDDSY--------------- 451 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L++ L+ + + + + D + +K++ F + F ++ + L Sbjct: 452 -ERYLIVALLKNFSYFGIIRRNIIDSDLIDVNARKVFMCFEDLFENNEDFSLMDLKRNLK 510 Query: 543 E--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQK 595 + + L +++ + + + R+ + + KR+ Q Sbjct: 511 DTYKVSEILFEEILNSEFEVDDETLIHVLLAIKRRKLDSRVVLCKKRYEGDSLVSAKIQI 570 Query: 596 EEIE 599 E+ Sbjct: 571 NELM 574 >gi|311110031|ref|YP_003982882.1| DNA primase 2 [Achromobacter xylosoxidans A8] gi|310764720|gb|ADP20167.1| DNA primase 2 [Achromobacter xylosoxidans A8] Length = 591 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 127/530 (23%), Positives = 212/530 (40%), Gaps = 63/530 (11%) Query: 2 NYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 P D ++ + + + ++G VD + Y CPFH E TPSF+ +K Sbjct: 14 RIPDDVVEQVKLRADENLVEVVGAAVDLRKAGN-----SYVGLCPFHSEGTPSFNVVPAK 68 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL------------------- 100 GF++C C KG + F G SF + ++ A GV + Sbjct: 69 GFFFCHGCGEKGRAVEFQQKYFGMSFPDVIREFAGRFGVRIPGEGGPSPVIQRALEVARR 128 Query: 101 ---PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIE 155 P D + + L ++E A F + L ++ +R + +I+ Sbjct: 129 PPAPAEDLPAPVSLERRAALSAVLEEALAAFRSPARGPHLQSATLQEWVKKRHLTDKSID 188 Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215 +F++G P + LRE + + + +I+A L+ + D+ +D FR+R+IFP+R + G Sbjct: 189 LFEIGITPRGWHGLREVFGDR-YDDPLLIDADLVRETDDQKRRFDTFRDRIIFPVRDANG 247 Query: 216 QVIAFGGRTLSKGES----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 ++ FGGR L+ + KYLN+ T +FHKG LY A + S Sbjct: 248 SLVGFGGRRLNDDKENERTPKYLNTGTTDIFHKGHLLYGLHVAKTEIA----------SR 297 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 + ++VEGYMDV+ L Q G N V+++GTA L L + + +V FDGD G RA Sbjct: 298 GYALVVEGYMDVVMLAQHGFPNAVAAMGTAFRGSHLNQLCQHTSEVVYLFDGDAAGERAM 357 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 ++A+ + G+DPD +IR G A +K + L +R E Sbjct: 358 WRAVR--ESLPYADRVNFRFISLNGQDPDEWIRSVGTDAVQKAVDHGESLASYFLRRVRE 415 Query: 392 NRSFNTPDER------------AELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQK 438 + + + + + LK + I LR+Y + + L + Sbjct: 416 MVAQDGAESSAPSDVKQRNGGPQDRALELKGMLALIPSRSSLRHYLEREVSRILAPSEES 475 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK--KPSLREAA 486 S + R R + ++ L P E A Sbjct: 476 AQASQSAPSQLDGLPPMKRLAIAAMLRPDLAGQIRPALLALLPPEHPERA 525 >gi|289548926|ref|YP_003473914.1| DNA primase [Thermocrinis albus DSM 14484] gi|289182543|gb|ADC89787.1| DNA primase [Thermocrinis albus DSM 14484] Length = 508 Score = 242 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 143/583 (24%), Positives = 235/583 (40%), Gaps = 86/583 (14%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 ++ + I ++I Y+D R +N Y CPFH + TPS + + SKG + CF C V Sbjct: 6 VVSKLDIVDVISSYIDLKRVGSN-----YAGRCPFHPDDTPSLYVSPSKGIWKCFGCGVG 60 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F++ G S+ E++ LA +PL + ++ L+ + A+ F+H Sbjct: 61 GDAVKFVALYEGVSYTEALMELARKYKIPLKLPS------QRHDDALLEALRQASQFYHE 114 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 LK ++ YL RG+ +I+ F+LGY+P S + K ++ E I Sbjct: 115 RLKEN--QQALEYLYGRGLSGRSIQRFELGYSPTSHQLCQFL---KEAGLLEVYERSGNI 169 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 + D F RLI PIR RG V+AFGGRTL E KYLNSPE F K L+ Sbjct: 170 LRLADGSCRDMFAGRLIIPIRDHRGNVVAFGGRTL-TDEKPKYLNSPEKEHFQKRNILFG 228 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 F+ ++++ R +ILVEGY DV+S+ QAG + V+ LGT+LT Q L+ Sbjct: 229 FYEGKEFIKERRR----------VILVEGYFDVISMHQAGFKETVAPLGTSLTSQQAHLI 278 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + ++L FDGD G +A +A+ L V + L GEDPD++++ Sbjct: 279 ASYADEVILIFDGDSAGRQAVRRAV---PHLLSENLSVKVLYLPEGEDPDTYVKKTDLH- 334 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 +ESLP + + +N L ++D R + Sbjct: 335 ---RELESLPDILEDLLSKAKN--------DRNSLETLLYLSGFVRDPVKRGEILLTLAK 383 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 S+++ + + + KK + E LL Sbjct: 384 LTGMPVSLL-----------------------SEKVPRVRGEREEEEKKLTFHEKILLTG 420 Query: 491 LINHPAILQEQYQELADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERG 545 ++ + + N L++L + + ++ L +R Sbjct: 421 ILRY--------------NFTNVPLEELNLSPYAAQILEAIQKEDLHLVPAEIRRGRISD 466 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + T ++ +R+ + A L KR Sbjct: 467 ERVFWDAVKALSIKKEDLEEETPKDLSQLRK--RPATRLRKRR 507 >gi|218288617|ref|ZP_03492894.1| DNA primase catalytic core domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218241274|gb|EED08449.1| DNA primase catalytic core domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 529 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 158/564 (28%), Positives = 257/564 (45%), Gaps = 45/564 (7%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR- 136 + G SF E+V LA G+PLP ++ + E+A F+H L N Sbjct: 1 MDIEGISFAETVSLLAERCGIPLPDSLHAPAQRSPRLERYRQAYELAAKAFNHILMNTDA 60 Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 + +YL RGI + F+LGYAP S ++ L+QKGFS E++I GL +D Sbjct: 61 GVQALHYLLSRGISRTTMATFQLGYAPPSGRAMMSFLQQKGFSAEELIACGLAVD--LGG 118 Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 DRFR R+I PI RGQV+AFG R L KYLNSPE LFHKG+ L+N A Sbjct: 119 ELVDRFRGRVIIPIADRRGQVVAFGARALDDDTKPKYLNSPEYELFHKGRMLFNVHRARK 178 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 +++ R +L+EGYMDVL++ QAG++ V++LGT+LTE Q +LL + Sbjct: 179 AIRRERRA----------LLLEGYMDVLAVAQAGIECAVATLGTSLTEDQAQLLKADCDK 228 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 +V+ +DGD+ G +A +AID+ G + L G DPD +IR +G AFE+++ Sbjct: 229 VVIAYDGDEAGRKATVRAIDV---LEQAGVTPVVLRLPDGMDPDEYIRAHGGRAFERMLS 285 Query: 377 ESL-PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 ES V L + + +P R E + + + Y + + Sbjct: 286 ESTWTAVQFLIEDMRARAEWVSPAGRTEFLRQVLRLLAERASPVEQEYQLRNLSQEFNLS 345 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + E G+ + ++ + R++ P +++ K ++S + +L + Sbjct: 346 VETLKEEMRGFAKPLRRRSPPREEVAPWVNSPRAAKGKDQVSLR-------ILQAALFSQ 398 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + ++ + L S ++S +EQ P RL + L L Sbjct: 399 EAAEYLMEK-GVTELAHPLHTALLSHVYSWRLEQPGQPPSAFIDRLEDEELVRLASSL-- 455 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 L+ E + Y +AL L++ L ++ +E + + A G+ EK+ Sbjct: 456 ------LFDEPPEITAE-LVDDYLRALELFR----LEQELKEKVRAWNEAEAAGDQEKS- 503 Query: 616 ILISILHEVHIQIHQIESQEAMIE 639 E+ +Q+ I+SQ A ++ Sbjct: 504 ------REIKLQVEWIQSQMATMK 521 >gi|51598963|ref|YP_073151.1| DNA primase [Borrelia garinii PBi] gi|51573534|gb|AAU07559.1| DNA primase [Borrelia garinii PBi] Length = 593 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 140/619 (22%), Positives = 249/619 (40%), Gaps = 65/619 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLAKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKG 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123 GD + FL + ++ ++++ L G+ L + +K E + + L Sbjct: 65 GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLI 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179 FF N K L Y L R I +++F+LGY P S + L KG+S Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRAISKEVVDLFELGYLPFSIKDGLELHDFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + A+ RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ LN ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + ++ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLALIQRYANEVIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+ + +K++ + L + N + + N IN K Sbjct: 344 ADLLKDKGEGSLQKILNNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + ++ + + R+ + Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + +K++ F K F ++ + Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLSDINARKIFMCFEDLFENNKDFSLMDLKR 507 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + L KR R L + + Sbjct: 508 NLKD-----------SYKVSEFFFEEILNSGFEIDDEALIHILIAIKR-RKLDSRVLLCK 555 Query: 600 KQIAQVTAKGEAEKTAILI 618 K+I + + L+ Sbjct: 556 KKIDGDSLVNAKIQINELM 574 >gi|224531758|ref|ZP_03672390.1| DNA primase [Borrelia valaisiana VS116] gi|224511223|gb|EEF81629.1| DNA primase [Borrelia valaisiana VS116] Length = 593 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 139/632 (21%), Positives = 253/632 (40%), Gaps = 68/632 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLIKSGS-----TYKGLCPFHAEKTPSFFVNPLQGYFYCFGCKKG 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123 GD + FL + ++ ++++ L G+ L + +K E + + L Sbjct: 65 GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKISLKSEKKNENKDIVSKIYSLNSRLI 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179 FF N K L Y L R I +++F+LGY P + + L KG+S Sbjct: 125 NTIKFF----LNKNKKALDYVLKSRSISKEVVDLFELGYLPFNVKDGLELYDFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 FEILRKSGLFSKTNPK---VSILSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ + ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGFDEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + ++ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLALIQRYADEVIFSFDGDDAGLSATLKAYQICLPF---NINVSIVKMDFGRDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+ + +K++ D L + N + + N IN K Sbjct: 344 ADVLKDEGEVSLQKILNNRCDAFDYLLDVYSNKYDLNKTVDLNAMINLFLNLINLSKLDT 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + ++ + + R+ + Sbjct: 404 QKKIFLDKLSNKLGIGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + ++K + F K F ++ + Sbjct: 452 ----ERYLIVALLKNFSYFCIIRRNIIDSDLIDVNVRKTFVCFEDLFENNKDFSLMDLKK 507 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + +E + D + L KR R L + + Sbjct: 508 NLKD---------IYKVSEFFFEEILNSEFEVDD--ETLIHVLLAIKR-RKLDSRVLLCK 555 Query: 600 KQIAQVTAKGEAEKTAILI---SILHEVHIQI 628 ++ + + + L+ + I I Sbjct: 556 RRCNEDSLVNAKVQINELMFLNMQRKNLKIYI 587 >gi|195953902|ref|YP_002122192.1| DNA primase [Hydrogenobaculum sp. Y04AAS1] gi|195933514|gb|ACG58214.1| DNA primase [Hydrogenobaculum sp. Y04AAS1] Length = 535 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 132/544 (24%), Positives = 238/544 (43%), Gaps = 59/544 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+D + I I I Y++ R +N Y CPFHD+ TPS ++ K + CF C Sbjct: 18 IEDAIKKIDIVKEISSYIELKRSGSN-----YLGKCPFHDDSTPSLSVSEQKQIWKCFGC 72 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD + F+S S++E++ +LA +P+ K E+ + ++ + ++F Sbjct: 73 GKGGDVVKFVSLHENISYMEALSKLAIKYNLPI------NIKSEEKNHKIYEVMSLVSNF 126 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 +H L + + YL +R I+ +E++++GY+P+ L Q + Sbjct: 127 YHEEL--TKSPKAMQYLQKREINPKTVEIYEIGYSPNHYKVL--EFLQNTSEHYLELYKS 182 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGK 246 +S + D F RL+ PI+++ V+ FGGR L + +S +KYLNSP++ +F K + Sbjct: 183 TQNLHKSSNSIRDIFEGRLVIPIKNASSNVVGFGGRILYEDKSAIKYLNSPDSFIFKKSQ 242 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 L+ AL Y++ +ILVEGY DV+ L Q GV+NVV+ LGTA TE Sbjct: 243 LLFGIDIALPYIK----------EKEEVILVEGYFDVIRLYQIGVRNVVAPLGTAFTEEH 292 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 + + K + + FD D+ G A+ +A + G + +V + +DPD F + Sbjct: 293 AKTISKYAKTAYIMFDNDNAGKNASLRAA---KYLIAKGIKAFYVEIKDAKDPDEFGMKF 349 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK +L+ S ++D+ ++ ++++K+ + + YSQ Sbjct: 350 GKDGVLELLKTSKNIIDLNI--------------ESKNIDTALELVSYLKEPEDIFQYSQ 395 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG----------KL 476 + L K+I + + + +N D + L+K L Sbjct: 396 KL---LAVGLPKHIIDQYVGKKSFVENKEQGDISYEKIPMKDRILLKALKECDIVDINPL 452 Query: 477 SKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + ++ I + + E+ + L + Y + L +L EQ E Sbjct: 453 DIDWLDKNSIIIAEKIKYQQELSDEELKLLESVDYLTKD--ALEKYLLKTAKEQNAVTKE 510 Query: 536 EIHQ 539 E+ Sbjct: 511 ELMN 514 >gi|269123265|ref|YP_003305842.1| DNA primase [Streptobacillus moniliformis DSM 12112] gi|268314591|gb|ACZ00965.1| DNA primase [Streptobacillus moniliformis DSM 12112] Length = 595 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 142/636 (22%), Positives = 269/636 (42%), Gaps = 54/636 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + ++ +I I +LIGQYVD ++ Y PF E TPSF + K + FS Sbjct: 9 EKIINNIDIVDLIGQYVDLNKAG-----VSYKGYSPFKSENTPSFSVHPVKKIFKDFSSG 63 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 G+ +SF S + S+ E++ L+ G+ + + K K+ I ++++ A +FF Sbjct: 64 KGGNVISFYSYIKNISYYEALHELSKKYGINIKKSNSKYLIKDNIG---HKILKDAMEFF 120 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + YL RG + + ++ + +GYA + L HL++K EE I + Sbjct: 121 R--LNFEKSSEAKEYLINRGFNLNDLKRYDIGYATNDWNLLYNHLKEKYDVEELIKLGLV 178 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKN 247 + ++ YD FR R+IFPI + QV+ FGGR + + + KYLNS E+ +F K Sbjct: 179 TVSSTDTNNIYDTFRKRIIFPIFNIHQQVVGFGGRYIGENVNAPKYLNSTESYVFDKSSE 238 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LY F K + + IL+EG++DVLS N V+SLGTA TE Q Sbjct: 239 LYGLFN----------KGIEIKEKKYAILMEGFLDVLSSHINTFDNAVASLGTAFTEKQA 288 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCY 366 +LL K + I++ +D D+ G +A I++ + L G +DPD + + Y Sbjct: 289 KLLKKYTDNIIIMYDKDEAGQKATKSVINI---LNKLEFNIKCSSLPDGVKDPDEYFKKY 345 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 K F +++ +S+ +D +++ + ++ F + E +K+ ++ + + Sbjct: 346 SKDDFFEILGKSVGALDYIFEMDLKDFDFTQTTSKREAIELMKSYFENVTNDIV------ 399 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 D +++ + E + +N + + + + V K++K+ L + + Sbjct: 400 -YSDEIEKFSRLIDVETKYILSKYIRNKNKNFKDLDTIKEVSQDRVNEKINKQEELEKLS 458 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 ++ L+ + Q Y L + + + +L L S + Sbjct: 459 IVFLLLG-KEVDQILYNILKSFEFQSEKYVELHKKLLS-------------IDYKIDEVS 504 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 +L + + + D + + L L + S I ++I + Sbjct: 505 YLVLTKDEEEFMIETTCEFKNNYTDEDYIRIIKTWLELLIKKYEASIDILPINEKIDKKI 564 Query: 607 AKGEAEKTAILISILHEV--HIQIHQIESQEAMIEG 640 G L++ L V + + + +++G Sbjct: 565 HIG------KLLNKLRNVVNINNLEKCYKEIIVLKG 594 >gi|298376726|ref|ZP_06986681.1| CHC2 zinc finger protein [Bacteroides sp. 3_1_19] gi|298266604|gb|EFI08262.1| CHC2 zinc finger protein [Bacteroides sp. 3_1_19] Length = 573 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 129/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ + I + Y+ R D+ A CPFHDE+ PSF + ++ Sbjct: 2 LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFSC D + + + GC F E+V+ LA + + + + D + Sbjct: 57 KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A F L +++R F +G P Sbjct: 114 LANASFASGLLPGHPVGTARTIEDRHGLEETYCGFGVGLCPPD----------------- 156 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + F RLIFPI ++ GQV F GR+L+ E KY+NSP++ Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HKG LY A+ ++ S I+L EGY DVL+ G++ V GTA Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE +R + +L+ ++ L D D G + + ++L G V+ + L G DPD Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R G +L E + + ++ + P I + Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + E S GP + + Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPAL 414 Query: 482 LREAALLLTLI-NHPAILQE-----------QYQELADIRYD--NNELQKLWSFLFSDFV 527 RE LL + +H + + ELAD + E +L L Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNGISLPAWVSGELADNELPLEDPEHARLLHLL----A 470 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E K+ + + L+ L T + G + L Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640 R+ + + E + + + +I +++SQ + EG Sbjct: 519 ESFARRKLARALESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572 >gi|193216689|ref|YP_001999931.1| DNA primase [Mycoplasma arthritidis 158L3-1] gi|193002012|gb|ACF07227.1| DNA primase [Mycoplasma arthritidis 158L3-1] Length = 612 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 139/634 (21%), Positives = 259/634 (40%), Gaps = 49/634 (7%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++L I ++I + V ++ N + ACCPFH EKTPSF + KG + CF C Sbjct: 8 EEVLARTDIVSVISETVTLSKQGKN-----FRACCPFHGEKTPSFMVSPEKGIFKCFGCG 62 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP---VVDPKIEKKEKIQTDLIRLIEVAT 125 G+ L FL S +E+++ LA A + + + K + + LI + + A Sbjct: 63 KSGNALKFLEYSKNISSLEALKMLATKANINIDDYLTKHTQATAKSQEELTLIDITKEAN 122 Query: 126 DFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 DFF + + KN L +L+ R +D+ I+ F++G+AP+ + F++ I Sbjct: 123 DFFQYQMVKNKETPELKKFLESRHLDNKLIKEFEIGFAPE--NISIYSHLKNKFNDFAIS 180 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 A L+ ++ NR+ FPI++ G V+AF R ++ KYLNS ET +F K Sbjct: 181 NASLVSSISFEKNFFN---NRITFPIKNEYGDVVAFSARDITNKLDNKYLNSAETPIFKK 237 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + L+N++ A ++ +S+ + LVEG D ++L +A N V+S+GT+L++ Sbjct: 238 SEVLFNYYHAKPFI----------SSTKEVYLVEGQFDCIALYKANFPNAVASMGTSLSK 287 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL-IPGNRVNFVLLSRGEDPDSFI 363 L LL +I L FD D G A K + ++L VNF+ + +D D Sbjct: 288 NHLALLRG--TKINLFFDSDAAGKAATEKNLKIILMLSLDFSLEVNFLKNTFNKDADELY 345 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINHIKDQKLR 421 + ++ L + L+ E +R E+ L + ++ Sbjct: 346 NLDDGQTLKTILKRPQDLGEYLYDTFIEPYKNTALNAQKRYEIYSKLFEYLYYLPKPMQL 405 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + S+ I + + E S + + K S + SS + + Sbjct: 406 LFKSRLINENILDKETYESFESSFLKPNFPSDPNLARIKITSSKTKNSSEIPKSFTNYY- 464 Query: 482 LREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSFLF---SDFVEQKYFLPEEI 537 E +L +N P ++ + ++ I + + + + + + Sbjct: 465 --ENSLSFNDLNFPKQIKPKAKK--SINFGRSGDFAIILKAILMHPDYIKRWPKETYATL 520 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 H ++ L+ + + E D + L+L + L+ Sbjct: 521 HAEELQQTKKSLICYIISKNDKMKDKFLLPELIKND------ENLSLETKDEYLN----- 569 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 I +I + + E+ I L++ ++ QI Sbjct: 570 ILLEIQNLNSSTSEEEFDSKIKALNQSEPKLKQI 603 >gi|301310030|ref|ZP_07215969.1| putative CHC2 zinc finger protein [Bacteroides sp. 20_3] gi|300831604|gb|EFK62235.1| putative CHC2 zinc finger protein [Bacteroides sp. 20_3] Length = 573 Score = 237 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 129/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ + I + Y+ R D+ A CPFHDE+ PSF + ++ Sbjct: 2 LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFSC D + + + GC F E+V+ LA + + + + D + Sbjct: 57 KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A F L +++R F +G P Sbjct: 114 LANASFASGLLPGHPVGTARTIEDRHGLEETYRGFGVGLCPPD----------------- 156 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + F RLIFPI ++ GQV F GR+L+ E KY+NSP++ Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HKG LY A+ ++ S I+L EGY DVL+ G++ V GTA Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE +R + +L+ ++ L D D G + + ++L G V+ + L G DPD Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R G +L E + + ++ + P I + Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + E S GP + + Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPAL 414 Query: 482 LREAALLLTLI-NHPAILQE-----------QYQELADIRYD--NNELQKLWSFLFSDFV 527 RE LL + +H + + ELAD + E +L L Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNGISLPAWVSGELADNELPLEDPEHARLLHLL----A 470 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E K+ + + L+ L T + G + L Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640 R+ + + E + + + +I +++SQ + EG Sbjct: 519 ESFARRKLARALESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572 >gi|301165750|emb|CBW25322.1| putative DNA primase [Bacteriovorax marinus SJ] Length = 641 Score = 236 bits (601), Expect = 9e-60, Method: Composition-based stats. Identities = 137/663 (20%), Positives = 259/663 (39%), Gaps = 61/663 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ +D + ++ IPIS ++G Y+ ++ A+ CPFHD+ PS + DS+G Sbjct: 1 MSL-KDLKERIVNEIPISAIVGNYITVTKKGNTALS-----ICPFHDDHKPSMNVTDSRG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--I 118 Y CF+C G+ + F+ FIE+++ + + G+ D ++K K L Sbjct: 55 RYKCFACEAGGNAIDFVINYKNLDFIEALKEICSNHGIN---FDDYNKQKAKPPKVLMAE 111 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 +++ ++ + ++ + ++ RG+ + + LGYAP Sbjct: 112 KILTKSSQLYQRIAESGHYEEYTKFIKNRGLSKDIAKTYNLGYAPKDSKLTTYLSSIPDE 171 Query: 179 SEEKIIEAG------LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 E + + +D ++S + YD FR+R+IFPI GQV+ + R + + K Sbjct: 172 KERDFALSVAKELGLIRVDKNDSKSHYDTFRDRIIFPIWDQYGQVVGYTSRAVFDYQKAK 231 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 Y+NS E+ +F K LY A + ++ S +ILVEG MD ++L G Sbjct: 232 YMNSLESFIFKKKHILYGLHLAKSSIR----------SKDAVILVEGNMDQIALFNKGFT 281 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 N V G A+ + L L L+ I L D D+PG AA + + L G F+ Sbjct: 282 NSVGIQGIAMGDSSLVKLKALTKNIYLALDNDNPGWNAATR---INTQCLESGITAKFID 338 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L+ +DPD F++ G +K I + +D+ +R + D + ++ + + Sbjct: 339 LAPHKDPDDFLQAEGSIELQKRIDNAKAFIDVQIERAIPTKVPELLDAQLQILNKVFAIL 398 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + +KD + + L + S Y + + P+ L+ Sbjct: 399 SPLKDALAATERAAQAAKTIG-LKSEASQIISNYKDFLSGDQPPVQHFAPTPSEETEGLI 457 Query: 473 KGK--------------------LSKKPSLREAALLLTLINHPA-ILQEQYQELADIRY- 510 S S E L +I HP + ++ EL + + Sbjct: 458 TESFHEEIPYEELQYLSGEMELVDSPSLSKIETTFLSEIIKHPECLTSDKIGEL--LDFV 515 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 +NE+Q ++ L F E E + ++V + L + ++ Sbjct: 516 TSNEVQNYFTRLRELFYE---IDESEFVAIVSNFTNNGTFSSELKEVIASALKNYRAISH 572 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + L + +E+ + Q + + E L+S L + + Sbjct: 573 DDKAISKIIFDVRKKLELTKLDIECDEL--SLKQKSCTTDEEN-NKLMSELLAKKQERAK 629 Query: 631 IES 633 +++ Sbjct: 630 VKA 632 >gi|313665391|ref|YP_004047262.1| DNA primase [Mycoplasma leachii PG50] gi|312949952|gb|ADR24548.1| DNA primase [Mycoplasma leachii PG50] Length = 604 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 128/632 (20%), Positives = 260/632 (41%), Gaps = 37/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +++ + I ++I Y+ ++ N Y A CPFH++ PS + K Y Sbjct: 4 ITNEKINEIISRVSIVDIISSYLHLIKKGNN-----YLAICPFHNDSNPSLTISPQKRIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 CFSC G+ ++F+ F+ +++ + + + L D K+ + +L Sbjct: 59 TCFSCKATGNVINFIKDYEHVDFLTALKTVCQKSNIQLDELKDFHQPIKDLESEMIFKLN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A D F +L + YL R I I+ F++G+A D ++ L K ++ Sbjct: 119 SEANDIFKTTLFSNLGTNALEYLKLRNISIEEIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I +A L I ++ Y F NR+IFPI+ +I F GR+ +K KYLN+ E + Sbjct: 178 DIEKANLGIITNSYNKDY--FTNRIIFPIKDENSHIIGFSGRSYTKDNEPKYLNTKENKV 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K YN AL + II++EG+MDV+SL + + NV++ +GT+ Sbjct: 236 FKKSHLAYNIANALKISKAL----------KQIIVLEGFMDVISLSRIDINNVIALMGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ Y L L K + ++L DGDDPG++ I + L V + DPD Sbjct: 286 LSNYHLELFKKHNLEVLLFLDGDDPGVQ---ANIKISHQLLKQQINVKIIDNQTSYDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I +++I + + ++ L +++ N PD+ ++ N I + + L Sbjct: 343 LIN-NDIEYLKQIINKPIHPINYLIEKKWIKTDINDPDQIENFIKNVLNFIVDLNNNILV 401 Query: 422 YYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + + + Q + + N + + + + L + K Sbjct: 402 ENTIKKLCELTKISEQTIKKTLDDLKIKSNKQQTNKNTIQKLYTTNKPISKKLPVDFIKK 461 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEE 536 + E + ++L+ L + + + + + + + L + + ++ + + Sbjct: 462 EYINAEQRIFVSLLISDQFLDKIAANVEKMIHPDIKYATI--NLINLYNKKIYQGNDINK 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L E K+ + + ++ + + + ++ + + +K +L+ Sbjct: 520 AFELLKEYNLMGFDKKQEEIINNSLITQIAIKES--EIDDAFNKLDLYHKHAEVLN---- 573 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 ++K +A+ K E + I L + Sbjct: 574 -LKKMLAESKNKTERIQIWNGIDTLKNKKKKR 604 >gi|256840172|ref|ZP_05545681.1| DNA primase [Parabacteroides sp. D13] gi|256739102|gb|EEU52427.1| DNA primase [Parabacteroides sp. D13] Length = 573 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 126/654 (19%), Positives = 216/654 (33%), Gaps = 99/654 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D ++ + I + Y+ R D+ A CPFHDE+ PSF + ++ Sbjct: 2 LTDDTLRKVRETARIDEVASGYLTLHRSGK-----DFVALCPFHDERHPSFRVSPARNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CFSC D + + + GC F E+V+ LA + + + + D + Sbjct: 57 KCFSCGEAADPIRLVCHMEGCGFEEAVRLLARKYNIEVEET---AAAGRERRRDEREALL 113 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A F L +++R F +G P + Sbjct: 114 LANASFASGLLPGHPVGTARTVEDRHGLEETYRGFGVGLCPPN----------------- 156 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETIL 241 + F RLIFPI ++ GQV F GR+L+ E KY+NSP++ Sbjct: 157 ------------VPQVFRPFLGRLIFPIHTTGGQVAGFAGRSLTPSEKGRKYVNSPDSPA 204 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 +HKG LY A+ ++ S I+L EGY DVL+ G++ V GTA Sbjct: 205 YHKGHILYGLHKAVKAVR----------SEGRILLCEGYKDVLAFHACGIRYAVGLCGTA 254 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE +R + +L+ ++ L D D G + + ++L G V+ + L G DPD Sbjct: 255 LTEEHIRAIRRLAGQVTLSLDPDPAGRQNTVRCAHMLLSE---GCAVSLLPLPDGMDPDE 311 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R G +L E + + ++ + P I + Sbjct: 312 VYRRKGSDELARLAREGT----LDYLSYRIRQAASRPHTDTAAINETLGEIGLLSSPLAV 367 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + E S GP + + Sbjct: 368 YRRIGELSGATGIPIEVLRQEISV-------------ATGPKNVPVPVPKKEAAGLTPTL 414 Query: 482 LREAALLLTLINHPA--ILQEQYQELA------------DIRYDNNELQKLWSFLFSDFV 527 RE LL + H E++ ++ ++ E +L L Sbjct: 415 PRERTLLRFCLTHHDRMFYDPDGNEISLPAWVSGELADNELPLEDPEHARLLHLL----S 470 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E K+ + + L+ L T + G + L Sbjct: 471 EGKHPDG------IADERLSALVLSLRASA------PQDTGPVPDERLPGETRFQVLLYG 518 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQEAMIEG 640 R+ + + E + + + +I +++SQ + EG Sbjct: 519 ESFARRKLARTLESVRTAATPEERLRLQATLENHFALSDRIARELQSQSILPEG 572 >gi|302345478|ref|YP_003813831.1| DNA primase [Prevotella melaninogenica ATCC 25845] gi|302149959|gb|ADK96221.1| DNA primase [Prevotella melaninogenica ATCC 25845] Length = 1043 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 99/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+ +L I +++G+++ +R T Y A CPFH EKTPSF ++ + Sbjct: 9 IPKTIIEKILDAAHIEDVVGEFLPLQKRGTI-----YRALCPFHQEKTPSFTVTPNRSMF 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF CH G+ ++FL ++ E+V+ L G+ + + I++K++ + L+ + Sbjct: 64 YCFGCHKGGNVITFLMEHENMTYPEAVRWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 123 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + Y R + ++G+AP +L QK F Sbjct: 124 NTAVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALAHLPLQKEF-- 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + YD F+NR++ PI+ +I F R + KYLNS E++ Sbjct: 179 -------LQELGLINPQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESL 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ K ++ A K + + LVEG D + L GVQN V+ LG+ Sbjct: 231 LYSKRSTVFGLDVAWRAAGK----------TGQMYLVEGAPDCMRLHAIGVQNAVADLGS 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDD----------PGLRAAYKAIDLVLCHLIPGNRVNF 350 A T Q +L+ + + ++ D D + + + Sbjct: 281 AWTVEQFQLIKRAANKVCFIPDNDPLKGGADYGTGIEAVMKAGKLATEQHLTVSVKEITT 340 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + EDPD++ + + L +LW + +++++ + + Sbjct: 341 TEEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKRIAH 394 Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453 ++ I D + A+ +LF + E+ R K Sbjct: 395 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAIENERTRRDSPKE 438 >gi|308189915|ref|YP_003922846.1| DNA primase [Mycoplasma fermentans JER] gi|319777142|ref|YP_004136793.1| putative DNA primase [Mycoplasma fermentans M64] gi|307624657|gb|ADN68962.1| DNA primase [Mycoplasma fermentans JER] gi|318038217|gb|ADV34416.1| Putative DNA primase [Mycoplasma fermentans M64] Length = 635 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 128/667 (19%), Positives = 254/667 (38%), Gaps = 78/667 (11%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + ++ I ++I +V ++ + CPFH + PS + + K + Sbjct: 5 NHEIVDSIIASNDIVDVINSFVTLSKKGR-----SFVCICPFHQDTNPSMNVDPKKQIFK 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIRLI 121 CF C V G+ L+FL +F ES++ LA + + L I + + +I + Sbjct: 60 CFVCQVGGNVLTFLMKYKKWTFQESLEYLANRSNINVDLSSFQKSISRYNEEDLKIIEIN 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A F L ++K L ++ +R + S I+ F +GY+ + ++ + + Sbjct: 120 NKANSLFKLELIKRKNKELKDFIHKRALTSEIIQAFDIGYSEEESFNSIFANELENIPDL 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + + F+NR+ F I+ +G+++ F R L KY+NS ET L Sbjct: 180 LVKASLINS-----HNKSVAFKNRITFAIKDEQGEIVGFSARALDNDTKPKYINSNETKL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K LYN++ A ++ + II+ EG+ DV++L +A + N V +GTA Sbjct: 235 FKKNSLLYNYWQA-----------NSKSEDNSIIITEGFFDVIALFKAEIYNAVGLMGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT RLL ++V+ DGDD G +A+ K+ +L H V + DPD Sbjct: 284 LTNNHFRLLKN--KKVVIFLDGDDAGQKASLKSAKFLLDHR---IDTYIVRNTTKYDPDE 338 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKDQ- 418 YG KLI E+ +D +++ ++ + + +E ++ + +N ++ Q Sbjct: 339 LFNSYGADILHKLIKEAPAALDFIYENLSKKYNLSVSPNNEIKNVKAFCNDFVNFLEHQE 398 Query: 419 -KLRYYYSQAI-------------------RDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 ++ +Y I D + + E SG + + N Sbjct: 399 INVQEFYKNKIQTDYGFSIQVKHNFKLPDPYDSQEIYAPQQFPEDSGEYQLLENNIPPYA 458 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQELA---D 507 + + P E L L+NH +++ + D Sbjct: 459 YDEQNYNQVVEYSNNVNNFNHPLNNEVPLSDYWINNLFYLLLNHTELIKLFKEREDTHKD 518 Query: 508 IRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + + + L L+ F E K ++ + + + + L++ + Sbjct: 519 LMFFGKLNNEDLKKELYQTFRESKSIKVAKLKEYIKDLEQENVDIDLNQFSKKYKEDKII 578 Query: 567 TEANIVDVRQGYQQALALYKRF---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + R+ +++ Y ++ + +Q I+K L E Sbjct: 579 KQNFKDVYRRALKESDNAYNKYTSNPEVLKQISSIKK------------MYDEHKEKLRE 626 Query: 624 VHIQIHQ 630 + + + Sbjct: 627 MQKRKEE 633 >gi|238810061|dbj|BAH69851.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 635 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 128/667 (19%), Positives = 254/667 (38%), Gaps = 78/667 (11%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + ++ I ++I +V ++ + CPFH + PS + + K + Sbjct: 5 NHEIVDSIIASNDIVDVINSFVTLSKKGR-----SFVCICPFHQDTNPSMNVDPKKQIFK 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKIQTDLIRLI 121 CF C V G+ L+FL +F ES++ LA + + L I + + +I + Sbjct: 60 CFVCQVGGNVLTFLMKYKKWTFQESLEYLANRSNINVDLSSFQKSISRYNEEDLKIIEIN 119 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A F L ++K L ++ +R + S I+ F +GY+ + ++ + + Sbjct: 120 NKANSLFKLELIKRKNKELKDFIHKRALTSEIIQAFDIGYSEEESFNSIFANELENIPDL 179 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + + F+NR+ F I+ +G+++ F R L KY+NS ET L Sbjct: 180 LVKASLINS-----HNKSVAFKNRITFAIKDEQGEIVGFSARALDNDTKPKYINSNETKL 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K LYN++ A ++ + II+ EG+ DV++L +A + N V +GTA Sbjct: 235 FKKNSLLYNYWQA-----------NSKSEDNSIIITEGFFDVIALFKAEIYNAVGLMGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT RLL ++V+ DGDD G +A+ K+ +L H V + DPD Sbjct: 284 LTNNHFRLLKN--KKVVIFLDGDDAGQKASLKSAKFLLDHR---IDTYIVRNTTKYDPDE 338 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRS--FNTPDERAELEIHLKNCINHIKDQ- 418 YG KLI E+ +D +++ ++ + + +E ++ + +N ++ Q Sbjct: 339 LFNSYGADILHKLIKEAPAALDFIYENLSKKYNLSVSPNNEIKNVKAFCNDFVNFLEHQE 398 Query: 419 -KLRYYYSQAI-------------------RDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 ++ +Y I D + + E SG + + N Sbjct: 399 INVQEFYKNKIQTDYGFSIQVKHNFKLPDPYDSQEIYAPQQFPEDSGEYQLLENNIPPYA 458 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQELA---D 507 + + P E L L+NH +++ + D Sbjct: 459 YDEQNYNQVVEYSNNVNNFNHPLNNEVPLSDYWINNLFYLLLNHTELIKLFKEREDTHKD 518 Query: 508 IRYDNN-ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + + + L L+ F E K ++ + + + + L++ + Sbjct: 519 LMFFGKLNNEDLKKELYQTFRESKSIKVAKLKEYIKDLEQENVDIDLNQFSKKYKEDKII 578 Query: 567 TEANIVDVRQGYQQALALYKRF---RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + R+ +++ Y ++ + +Q I+K L E Sbjct: 579 KQNFKDVYRRALKESDNAYNKYTSNPEVLKQISSIKK------------MYDEHKEKLRE 626 Query: 624 VHIQIHQ 630 + + + Sbjct: 627 MQKRKEK 633 >gi|260591161|ref|ZP_05856619.1| putative CHC2 zinc finger [Prevotella veroralis F0319] gi|260537026|gb|EEX19643.1| putative CHC2 zinc finger [Prevotella veroralis F0319] Length = 1037 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 100/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+ +L I +++G+++ +R T Y A CPFH EKTPSF ++ + Sbjct: 2 IPKTIIEKILDAAHIEDVVGEFLPLQKRGTV-----YRALCPFHQEKTPSFTVTPNRSMF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF CH GD ++FL ++ E+V+ L G+ + + I++K++ + L+ + Sbjct: 57 YCFGCHKGGDVITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + Y + ++G+AP +L QK F Sbjct: 117 NATVHQHYREVFLRYKPPQDYAY---HRWGQKYCDEIEIGFAPIDGKALARLPLQKEF-- 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + YD F+NR++ PI+ +I F R + KYLNS E++ Sbjct: 172 -------LQELGLTNPQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDGQPKYLNSKESL 223 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L+ K ++ A K + + LVEG D + L G+QN V+ LG+ Sbjct: 224 LYSKRSTVFGLDVAWRAAGK----------TGQMYLVEGAPDCMRLHAIGIQNAVADLGS 273 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350 A T Q +L+ + + ++ D D P + ++ V Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEVPT 333 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + EDPD++ R + +LW + +++++ + + Sbjct: 334 TEEGKKEDPDTYFRN------QTFFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387 Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453 ++ I D + A+ +LF + E+ R K Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAIENERTRRDSPKE 431 >gi|330881701|gb|EGH15850.1| DNA primase [Pseudomonas syringae pv. glycinea str. race 4] Length = 577 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 148/593 (24%), Positives = 254/593 (42%), Gaps = 71/593 (11%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F ++V+ LA AG+ +P + ++ + L L+ A +F+ +LK+ Sbjct: 1 MDHDNLDFPQAVEDLAKAAGMEVPREQGVKGQKPRQPTDSPLYPLLTAAAEFYRQALKSH 60 Query: 136 RD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDN 194 K YL RG+ F LG+AP +L +HL ++ +I+AGLLI+ Sbjct: 61 PSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWENLYKHLSSDSLQQKVMIDAGLLIENAE 120 Query: 195 SATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254 + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET +FHKG+ LY F A Sbjct: 121 TGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHKGQELYGLFEA 179 Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314 + + + II+VEGYMDV++L Q G++N V++LGTA +E L+ L+++ Sbjct: 180 RKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVV 229 Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK- 373 P ++ CFDGD G AA++A++ L +L G R F+ L GEDPD+ +R G AF+ Sbjct: 230 PNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVRSEGTDAFKAR 289 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + + PL D +++ T+ + + +A + I+ + LR Q + + Sbjct: 290 INQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITG 349 Query: 434 QLFQKYIT------------------------------------EHSGYGRYWKKNARHR 457 + + + + + Sbjct: 350 LTGEAVSQLVQSAPVDAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTPKKTGGQNQKK 409 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNE 514 + + + + + P+ E A L TL++HP + ++ + + ++ Sbjct: 410 WDNKSWGKKGKRQDFEPRTPRVPTAVEPPMQAALRTLLHHPELAEKV-ENASHFAAEDQS 468 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 +L L + ++ R G LL+ L + W + Sbjct: 469 NAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-----WLIEADNLEQQF 523 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 +L+ +R R L + + E +A L E+ + Sbjct: 524 FDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKIQLRELLNR 565 >gi|42561000|ref|NP_975451.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492497|emb|CAE77093.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321444|gb|ADK70087.1| DNA primase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 612 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 125/640 (19%), Positives = 245/640 (38%), Gaps = 45/640 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +++ I ++I Y+ ++ N + A CPFH++ PS + K Y Sbjct: 4 ISNEKISEIISKANIVDIISSYLHLIKKGRN-----HLAVCPFHNDSNPSLTISPEKRIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 CFSC G+ ++F+ F+ +++ + + L + + K+ + +L Sbjct: 59 TCFSCKATGNVINFVKDFEHVDFVTALKIVCDKTNISLDELKNYNQPIKDLESETIFKLN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A + F +L + YL R I I+ F++G+A D ++ L K ++ Sbjct: 119 SEANNIFKTTLFSNLGIDALEYLKSRNISIEQIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I +A L I ++ Y F NR+IFPI+ QVI F GR+ +K KYLN+ E + Sbjct: 178 DIEKANLGIITNSYTKDY--FTNRIIFPIKDENDQVIGFSGRSFTKDNDPKYLNTKENKV 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K YN L + + II++EG+MDV+SL + + N ++ +GT+ Sbjct: 236 FKKSHLAYNIASTLKISKSLKK----------IIVLEGFMDVISLSKIDINNTIALMGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ Y L L + + ++L DGDDPG++ I + L V + DPD Sbjct: 286 LSNYHLNLFKRHNLDVLLFLDGDDPGIQ---ANIKISHQLLKEKINVLVIDNQTNNDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + +++I + + V+ L + N P++ + N I + ++ L Sbjct: 343 LVN-NNVEYLKQIINQPIHPVNYLIDKLWNKVDNNDPNQIENFIKKVLNFIFDLNNEILV 401 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS---- 477 + + + Q + K N + K Sbjct: 402 EATINKLVELTKISEQTIKNNLIELKKQLKLNNSFNKNSTTQVFKTNTQTNKVNKQQFKT 461 Query: 478 -------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ- 529 K+ E + ++L+ L + + + + +++ L + + ++ Sbjct: 462 KPNDFIKKEYINAEKRIFISLLISDQFLDKIAANVEKM--IHPDIKHATINLINLYNKKI 519 Query: 530 -KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L E K+ + + ++ L S +R+ Sbjct: 520 YQGNDINKAFDLLKEYNLTGFDKKQEEIINNSLLTSIK-------IRESEIDDAFSKLDS 572 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + ++K +A+ K E + I L + Sbjct: 573 YHNDTEISNLKKLLAESKNKTERFQIWNGIDTLKNKKKKR 612 >gi|219685541|ref|ZP_03540358.1| DNA primase [Borrelia garinii Far04] gi|219672940|gb|EED29962.1| DNA primase [Borrelia garinii Far04] Length = 593 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 140/619 (22%), Positives = 250/619 (40%), Gaps = 65/619 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKS 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123 GD + FL + ++ ++++ L G+ L + +K E + + L Sbjct: 65 GDVIGFLMDMEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLV 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179 FF N K L Y L R I +++F+LGY P + + L KG+S Sbjct: 125 NTIKFF----LNKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + A+ RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ LN ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + I+ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+ + +K++ + L + N + + N IN K Sbjct: 344 ADLLKDKGERSLQKILDNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + ++ + + R+ + Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + + +K++ F K F ++ + Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLIDIDARKIFMCFEDLFENNKDFSLMDLKR 507 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + + L KR R L + + Sbjct: 508 NLKD-----------SYKVSEFFFEEILNSGFEVDDEALIHILIAIKR-RKLDSRVLLCK 555 Query: 600 KQIAQVTAKGEAEKTAILI 618 K+I + + L+ Sbjct: 556 KKIDGDSLVNAKIQINELM 574 >gi|260174582|ref|ZP_05760994.1| DNA primase [Bacteroides sp. D2] gi|315922844|ref|ZP_07919084.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696719|gb|EFS33554.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 1090 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 106/503 (21%), Positives = 190/503 (37%), Gaps = 55/503 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + + I ++ YV ++ CPFH E T SF N K Y Sbjct: 2 ISETTINKVRD-LDIKEVLEPYVTLTKKG-----VALIGLCPFHSENTASFKVNPQKNLY 55 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE----KIQTDLI 118 +CF C GD ++F+ SF+E+V +A + + VD K + + K + L+ Sbjct: 56 HCFGCGRGGDAITFIMEKENLSFMEAVLFIAKKHNIEIEYVDEKQTEDQKAEAKHRESLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLH--YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +++ FF +++ + +GYAP + + RQK Sbjct: 116 IVLDHVQRFFQENMRINTNDECRAARDYTYGRWPEEFCATSAIGYAPKDSQAFLDFCRQK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 +EE + E GLL +Y FR R++ PIR+ G++IA+ R + K ++ KY+N Sbjct: 176 ALNEELLFELGLLKRS-EDGRAYAMFRERIMIPIRNRWGRIIAYTARYIGKNSQAPKYIN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S +I++ KG+ L+ A R+ +++ I+VEG DVL + G N V Sbjct: 235 SATSIVYSKGETLFGIDRA-----------SRQRGANYFIIVEGAPDVLKMQSIGFDNTV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL---------------- 339 +SLGTA TE Q L K + + D D + + V+ Sbjct: 284 ASLGTAWTEEQFEQLKKFTSSVCFVPDSDVALDKFYGPGFEAVMANGASAIKKGFHVTVR 343 Query: 340 -------CHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 + + ED P +F + L + + Sbjct: 344 ELPFAQAPMTDEELQNLYADSEVPEDAPRMKPVKNDADSFIHCREDYTSLTEKHFIVWLA 403 Query: 392 NRSFN---TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSG 445 + F + E + + + + ++KDQ + + + +++ Sbjct: 404 QKRFFVAGSLMEERKCVAEIADLLRYVKDQLVFDQCIEQLAKLHGKVKLWRDAVSQARGE 463 Query: 446 YGRYWKKNARHRDQKGPSQRLMQ 468 + +K DQ+ ++ L Q Sbjct: 464 ARKRNEKQTGMNDQQREAELLRQ 486 >gi|83319946|ref|YP_424477.1| DNA primase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283832|gb|ABC01764.1| DNA primase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 604 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 125/632 (19%), Positives = 256/632 (40%), Gaps = 37/632 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I +++ I ++I Y+ ++ N Y A CPFH++ PS + K Y Sbjct: 4 ITNEKINEIISQANIVDIISSYLHLIKKGNN-----YLAICPFHNDSNPSLTISPQKRIY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 CFSC G+ ++F+ F+ +++ + + + L D K+ +++L Sbjct: 59 TCFSCKATGNVINFIKDYEHVDFLTALKTVCEKSNIQLDELKDFHQPIKDLESEMILKLN 118 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A D F +L + YL R I I+ F++G+A D ++ L K ++ Sbjct: 119 SEANDIFKTTLFSNLGSNALEYLKSRNISIEEIKKFEIGFASDKTNLVQ-KLLDKNYNSL 177 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 I +A L I ++ Y F NR+IFPI+ +I F GR+ +K KYLN+ E + Sbjct: 178 DIEKANLGIITNSYNKDY--FINRIIFPIKDENNHIIGFSGRSYTKDNEPKYLNTKENKV 235 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K YN AL + II++EG+MDV+SL + + N ++ +GT+ Sbjct: 236 FKKSHLAYNIASALKISKAL----------KQIIVLEGFMDVISLSRIDINNTIALMGTS 285 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ Y L L K + ++L DGDDPG++ I + L V + DPD Sbjct: 286 LSNYHLELFKKHNLEVLLFLDGDDPGVQ---ANIKISHQLLKQQINVKIIDNQTSYDPDE 342 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 I +++I + + ++ L ++ N P++ + + + I + + L Sbjct: 343 LIN-NDLEYLKQIINKPIHPINYLIEKNWSKIDINDPNQIEDFIKKVLSFIVDLNNNILI 401 Query: 422 YYYSQAIRDRLQQLFQKYIT---EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + + + Q E + N + + + + K Sbjct: 402 ENTIKKLCELTKISEQTIKKTLDELKTKLNKQQFNKNIIKKPYTINKPISKKNPVDFIKK 461 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEE 536 + E + ++L+ L + + + + + + + L + + ++ + + Sbjct: 462 EYINAEQRIFVSLLISNQFLDKIAANVEKMIHPDIKYATI--NLINLYNKKIYQGNDINK 519 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L E K+ + + ++ + T + + ++ + + +K +L+ Sbjct: 520 AFELLKEYNLTGFDKKQEEIINNSLITQITIKES--EIDDAFNKLDLYHKHAEVLN---- 573 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 ++K + + K E + I L + Sbjct: 574 -LKKMLVESKNKTERIQIWNGIDTLKNKKKKR 604 >gi|219684222|ref|ZP_03539166.1| DNA primase [Borrelia garinii PBr] gi|219672211|gb|EED29264.1| DNA primase [Borrelia garinii PBr] Length = 593 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 139/594 (23%), Positives = 247/594 (41%), Gaps = 64/594 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ QY+ + + Y CPFH EKTPSF N +G++YCF C Sbjct: 10 IKAKFDIVAIVEQYIKLVKSGS-----TYKGLCPFHAEKTPSFFVNSLQGYFYCFGCKKS 64 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV---PLPVVDPKIEKKEKIQ--TDLIRLIEV-- 123 GD + FL + ++ ++++ L G+ L + +K E + + L Sbjct: 65 GDVIGFLMDIEKINYNDALKILCEKFGIYYNDLKINRKSEKKSENKDMVSKIYSLNSRLV 124 Query: 124 -ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL---REHLRQKGFS 179 FF N K L Y L R I +++F+LGY P + + L KG+S Sbjct: 125 NTIKFF----LNKNQKALDYVLKSRAISKEVVDLFELGYLPFNIKDGLELHDFLVSKGYS 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E + ++GL + A+ RLIFPI+ +G V+ FGGR L G+ KY+N ET Sbjct: 181 SEILRKSGLFSKTNPKASI---LSQRLIFPIKDFKGNVVGFGGRDL-DGKGSKYINLSET 236 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LY F+ LN ++ S+ +ILVEGY+DVL+ +G++ VS+LG Sbjct: 237 EVFKKKELLYGFYEGLNEIK----------STKSVILVEGYIDVLAFFTSGIKRAVSTLG 286 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ ++ L L+ + + I+ FDGDD GL A KA + L V+ V + G DP Sbjct: 287 TSFSKEHLALIQRYADEIIFSFDGDDAGLSATLKAYQICLPF---NINVSVVKMDFGLDP 343 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ G+ + +K++ + L + N + + N IN K Sbjct: 344 ADLLKDKGERSLQKILDNKCDAFEYLLDAYSNKYDLNKTVDLNAMINLFLNLINLSKIDT 403 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++L + ++ + + R+ + Sbjct: 404 QKKIFLDKLSNKLGVGVTTLLKDYYRIKERFVVDNNKRNLYAHNDDSY------------ 451 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L++ L+ + + + + D + + +K++ + F K F ++ + Sbjct: 452 ----ERYLIVALLKNFSYFGIIRRNIIDSDLIDIDARKIFMCFENLFENNKDFSLMDLKR 507 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 L + + + + + D + L KR +L SR Sbjct: 508 NLKD---------IYKVSEFFFEEILNSGFEVDD--EALIHILIAIKRRKLDSR 550 >gi|75761904|ref|ZP_00741829.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490612|gb|EAO53903.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 235 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 120/237 (50%), Gaps = 9/237 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL RGI IE F++GYA + + + L+++G Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLNRGITKEMIEKFEIGYASPAWDAATKILQKRG 178 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 S + +AGLLI + + YDRFR R++FPI + +G+VIAF GR L + + Sbjct: 179 LSLSSMEQAGLLIRSEKDGSHYDRFRGRVMFPIYTLQGKVIAFSGRALGEDTPKVFK 235 >gi|254447696|ref|ZP_05061162.1| DNA primase [gamma proteobacterium HTCC5015] gi|198263039|gb|EDY87318.1| DNA primase [gamma proteobacterium HTCC5015] Length = 506 Score = 232 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 141/524 (26%), Positives = 237/524 (45%), Gaps = 34/524 (6%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ-TDLIRLIEVATDFFHHSLKNAR 136 F E+++ LA G+ +P + +++++ Q DL L++ A+ + LK Sbjct: 1 MEYDNLEFPEAIEELARTLGLEVPREESAGQQQQRRQSADLYDLMQQASLHYQSELKRH- 59 Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 + YL +RG+ + + +G+ P+S L + L + +++++ AG+LI D+ Sbjct: 60 -SQAIDYLKQRGLSGSTAKDYGIGFVPESWDYLIKRLGKNDRTQQQLESAGMLIRNDSG- 117 Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 YDRFRNR++FPIR RG+ IAFGGR + +GE KYLNSPET +FHKG+ LY + A Sbjct: 118 RIYDRFRNRIMFPIRDPRGKTIAFGGRVMGEGEP-KYLNSPETPIFHKGRELYGLYEAKR 176 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 + + + I++VEGYMDV+ L Q GV+ V+SLGTA T ++ L++L Sbjct: 177 HNKTLEK----------IVVVEGYMDVVMLAQHGVRYAVASLGTACTADHIQRLFRLVDD 226 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF-EKLI 375 ++ CFDGD G AA++A++ L L G +V F+ L GEDPDS ++ GK AF ++L Sbjct: 227 VLFCFDGDRAGRDAAWRALNNCLPALQNGKQVRFLFLPEGEDPDSMVQSEGKEAFEQRLA 286 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 +S PL + L R + D + K + I+ + ++ + +Q+ Sbjct: 287 QQSQPLSEYLIDRLKAQCDTQSIDGISRYAALAKPLLEQIQADTFKRLLTEELARAVQRP 346 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + + Q K +LS P ++ L+ P Sbjct: 347 VDQLFGQ-----------GGLNAPPPTQGNTTQKKPPKAQLSITPP---RLVIAALLAQP 392 Query: 496 AILQEQ-YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++ Q ++LA + + LF + + R + F L +L Sbjct: 393 SLAQTVTDEDLALVASLDERAVPFILELFQLLQQHPQLNTAALLDRYRDTPFDSALMELA 452 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 A A D + +R L+ R + Sbjct: 453 SYEFQAADKIA---IEFQDAFSNLLKRARKQRRQTLIQRPLSTL 493 >gi|288925956|ref|ZP_06419885.1| conserved hypothetical protein [Prevotella buccae D17] gi|288337176|gb|EFC75533.1| conserved hypothetical protein [Prevotella buccae D17] Length = 1037 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 100/464 (21%), Positives = 186/464 (40%), Gaps = 47/464 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+ +L I ++G+++ +R Y A CPFH EKTPSF ++ + Sbjct: 2 IPKTIIEKILDAAHIEEVVGEFLSLQKRG-----VIYRALCPFHQEKTPSFTVTPNRSMF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF CH G+ ++FL ++ E+V+ L G+ + + I++K++ + L+ + Sbjct: 57 YCFGCHKGGNAITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + Y R + ++G+AP +L QK F Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALARLPLQKEF-- 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + YD F+NR++ PI+ +I F R + KYLNS E+ Sbjct: 172 -------LQELGLINKQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESF 223 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L++K ++ A K+ R + LVEG D + L GVQN V+ LG+ Sbjct: 224 LYNKRNTVFGLDVAWRAAGKAGR----------MYLVEGAPDCMRLHAIGVQNAVADLGS 273 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350 A T Q +L+ + + ++ D D P + ++ + Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEIPI 333 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + EDPD++ + + L +LW + +++++ + + Sbjct: 334 TEEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387 Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453 ++ I D + A+ +LF + E+ R K Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431 >gi|225619916|ref|YP_002721173.1| DNA primase [Brachyspira hyodysenteriae WA1] gi|225214735|gb|ACN83469.1| DNA primase [Brachyspira hyodysenteriae WA1] Length = 599 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 146/619 (23%), Positives = 269/619 (43%), Gaps = 54/619 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFY 62 + + +LL + + +++ R Y CPFH E PS +D+KG Y Sbjct: 7 EKLNNLLSRVSLIDILRDRYKVIHRG----GSQYTVQCPFHKDGQETNPSMSVDDAKGIY 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLI 121 CF+C KG+ +++L SF E+VQ L V + K +K+KI + R+ Sbjct: 63 KCFTCGAKGNVITYLKEKENKSFKEAVQYLGNRFSVDVSGFFSAKTTQKDKIYLESRRIN 122 Query: 122 EVATDFFHHSLK------NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +A +FF SL + K YL R I I+ F++GYAP S +L L + Sbjct: 123 RIACNFFGKSLFLKDKNGDYFYKDAEKYLKSRKIPFSIIKEFRIGYAPPSWNALMNALAE 182 Query: 176 KGFSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + GL + +N YD F NR++FPI + R +++ FGGR++ G+ KYL Sbjct: 183 NKITVNNMNILGLVSVSKNNPNHYYDTFVNRIMFPIINEREEIVGFGGRSI-DGKEPKYL 241 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS E+++F K +LY A +Y+ K I+LVEGYMD ++ + G++NV Sbjct: 242 NSKESLIFKKKSSLYGINIAKSYIMKQ----------DEIMLVEGYMDTIACHKMGIKNV 291 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V +LGTA+TE + + K + +VL D D+ G++AA A+ + L ++ + + Sbjct: 292 VGTLGTAITEEHAKEIKKYTKNVVLALDSDEAGIKAAKMAV---ITLLKFDLKLTILSIQ 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCIN 413 +D D F YG++ F+ L L D + E + + + E+ + ++ Sbjct: 349 ETKDLDEFFTVYGRSRFDILYNNKLNWYDFVIDTEIKKDISSLSIAEKLNVINSFYKYLD 408 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +K + + + +L + + ++ + + + K K Sbjct: 409 AVKSETEKQMIISYVASKLNVDREAFNKDYLNTYNANQYASGIKYDK------------K 456 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K E +L+ L +P++++E +E++ + ++ + L + E Sbjct: 457 VKNIDNKFHYENSLIYLLALNPSLIKEAEREISVDLIKKDITREFYIRLLTLNKEASVED 516 Query: 534 PEEIH------------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 I ++L E L++L +++ + S E Sbjct: 517 ALNILGNEYIANQILSKKKLYSENIYEKLEELIIKIKSGCIDSEKKELQNNINLDNLDNI 576 Query: 582 LALYKRFRLLSRQKEEIEK 600 ++ LL++QKE++ + Sbjct: 577 YEAARKISLLNKQKEKLHQ 595 >gi|261881227|ref|ZP_06007654.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332000|gb|EFA42786.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 1037 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 98/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+ +L I ++G+++ +R Y A CPFH EKTPSF ++ + Sbjct: 2 IPKAIIEKILDAAHIEEVVGEFLSLQKRG-----IIYRALCPFHQEKTPSFTVTPNRSMF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF CH G+ ++FL ++ E+V+ L G+ + + I++K++ + L+ + Sbjct: 57 YCFGCHKGGNAITFLMEHENMTYPEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + Y R + ++G+AP +L QK F Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALVRLPLQKEF-- 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + YD F+NR++ PI+ +I F R + KYLNS ++ Sbjct: 172 -------LQELGLINKQGYDFFQNRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKDSF 223 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L++K ++ A K + + LVEG D + L GVQN V+ LG+ Sbjct: 224 LYNKRNTVFGLDVAWRAAGK----------AEQMYLVEGAPDCMRLHAIGVQNAVADLGS 273 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350 A T Q +L+ + + ++ D D P + ++ + Sbjct: 274 AWTAEQFQLIKRAASKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQNLIVSVKEIPT 333 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + EDPD++ + + L +LW + +++++ + + Sbjct: 334 SEEGKKEDPDTYFKN------QALFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387 Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453 ++ I D + A+ +LF + E+ R K Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431 >gi|269114990|ref|YP_003302753.1| DNA primase [Mycoplasma hominis] gi|268322615|emb|CAX37350.1| DNA primase [Mycoplasma hominis ATCC 23114] Length = 619 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 134/630 (21%), Positives = 248/630 (39%), Gaps = 65/630 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + + I ++I Y+ ++ N Y ACCPFH EKTPSF + K + C Sbjct: 4 DNIFEIVKQKLNIVDVISLYISLTKKGKN-----YVACCPFHGEKTPSFVVSQEKQIFKC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA--GVPLPVVDPKIEKKEKIQTDLIRLIE 122 F C G+ ++F+ S +ES++ L + + L I K Q DL + + Sbjct: 59 FGCSKSGNLITFIELYTKKSPLESIKELVSKFNLNIDLTRFSNSITTTTKEQEDLYNINQ 118 Query: 123 VATDFFH-HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +A D F L+ ++++L +L +R + I+ F++G+A + + + S Sbjct: 119 IANDIFQFEILEINQNEQLKLFLKKRRLTKPLIKEFEIGFADKDKNLCNMLIAKNCSSFN 178 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + + + F +RL+FPI++ G+++AF GR++ KYLNS ETI+ Sbjct: 179 LANSSLIAS-----NNFDNFFNDRLMFPIKNKDGRIVAFSGRSIYNNVEPKYLNSSETIV 233 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K + ++N++ AL+ + K S + LVEG D ++L + ++N V+ LGTA Sbjct: 234 FKKHEVMFNYYHALDEIIKK----------SSVYLVEGQFDCIALYKINIKNAVALLGTA 283 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI-PGNRVNFVLLSRGEDPD 360 L+ L L IVL FD D G A K + ++L + +V+FVL +DPD Sbjct: 284 LSIQNLESLRNC--NIVLFFDNDFAGKNATKKNLRIILANQKRYNLKVSFVLNEHSKDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA-ELEIHLKNCINHIKDQK 419 + + L L+ + T + R EL L + ++++ Sbjct: 342 ELYNIDEGKTLSDIACCPVDLFMYLFNEFKQVFQLETNESRKVELNAELFEFVIYLQEPL 401 Query: 420 LRYYYSQAIRDRLQQL-------------------FQKYITEHSGYGRYWKKNARHRDQK 460 + + I +++ + K + S Y KKN Sbjct: 402 ILKLKEKLIENKIFSIETWNKYLFLYGKENFPLHPISKNNLKASLDSEYNKKNYSKNSNY 461 Query: 461 GPSQRL---------------MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ-E 504 + L + + + KL +L ++ T+I HP + + Sbjct: 462 KKYEDLNFAYSDPSFDRLDFFEEPLIQQPKLITGRNLVFYLIIKTIIKHPQYIANYQLVD 521 Query: 505 LADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAG 561 A + + N + FL + K + KQ+ + Sbjct: 522 FARMAFPNGCQNHKMFLCFLINGIKNNKSIDETNFESYIANNIDLENNAKQIYLDLFKEI 581 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLL 591 + E ++ + + + + L Sbjct: 582 MSLKNKEYTKEELDKNLNNWMKETGQSKDL 611 >gi|163785510|ref|ZP_02180095.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1] gi|159879220|gb|EDP73139.1| DNA primase [Hydrogenivirga sp. 128-5-R1-1] Length = 242 Score = 230 bits (585), Expect = 7e-58, Method: Composition-based stats. Identities = 68/256 (26%), Positives = 126/256 (49%), Gaps = 14/256 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ + + ++I QY+ ++ + Y A CPFH EKTPSF+ + K Sbjct: 1 MAIAPESIDEIKSQVNVYDVISQYLPLEKVGS-----SYRALCPFHPEKTPSFYVSPQKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + CF C G ++F+ G SF E++ ++A G+ L + K + +L Sbjct: 56 IWKCFGCGKSGSAITFVMEYEGLSFSEALIKIAEKQGIKLKFIGKD---KFQENKKYYQL 112 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+ + F+ L+ + + YL ER I I+ F +GY+P+ ++ + E Sbjct: 113 LELVSKFYQQQLRTS--PKARKYLSERNILPSTIDKFNIGYSPEDDSFIKWIEKNNINKE 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 + + + R+IFPI++ +G+++ FGGR++ +S KYLNSPET Sbjct: 171 DLVKIGVISSVESKKDKF----SGRIIFPIKNLQGKIVGFGGRSIEPHKSPKYLNSPETQ 226 Query: 241 LFHKGKNLYNFFGALN 256 ++ K + LY + + + Sbjct: 227 IYKKSEILYGLYESKD 242 >gi|296127159|ref|YP_003634411.1| DNA primase [Brachyspira murdochii DSM 12563] gi|296018975|gb|ADG72212.1| DNA primase [Brachyspira murdochii DSM 12563] Length = 601 Score = 229 bits (584), Expect = 9e-58, Method: Composition-based stats. Identities = 145/618 (23%), Positives = 267/618 (43%), Gaps = 54/618 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFYYC 64 + +LL + + +++ R N Y CPFH E PS +D KG Y C Sbjct: 9 LNNLLSRVSLIDILRDKYKVVSRGGNK----YTVQCPFHKDGQETNPSMSVDDDKGVYKC 64 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKIQTDLIRLIEV 123 F+C KG+ +++L SF E+++ L V + K KK+KI + R+ + Sbjct: 65 FTCGAKGNVITYLKEKENMSFKEAIEYLGKRFSVDVTDFFSAKSSKKDKIYLESRRINRI 124 Query: 124 ATDFFHHSLK------NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 A +FF +L N K YL +R I I+ FK+GYAP S +L + L + Sbjct: 125 ACNFFGKTLLLKDKNGNYFYKEAEKYLKKRKIPFSIIKEFKIGYAPPSWNALIDALSENK 184 Query: 178 FSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + GL + +N YD F NR++FPI + R +VI FGGR++ G+ KYLNS Sbjct: 185 ITINNMHILGLASVSKNNPNHYYDTFVNRIMFPIINEREEVIGFGGRSI-DGKEPKYLNS 243 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 E+++F K +LY A +Y+ K I+LVEGYMD ++ + G++NVV Sbjct: 244 KESLIFKKKSSLYGINIAKSYIMKQ----------DEIMLVEGYMDTIACHKMGIKNVVG 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA+TE + + + + +VL D D+ A +L L ++ + + Sbjct: 294 TLGTAITEEHAKEIKRYTSNVVLALDSDE---AGIKAAKAAILTLLKFDLKLTILSIKET 350 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN-TPDERAELEIHLKNCINHI 415 +D D F Y K F+ L L D + + E + + + +E+ + ++ + Sbjct: 351 KDLDEFFTVYDKKRFDILYNNRLHWYDYIIETEVKKEISSLSIEEKLMIINSFYRYLDVV 410 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 K + + I +L + ++ + + + ++K Sbjct: 411 KSETEKQMIISHIASKLSVDREALNKDYLRTQKTNHNVSYNDNRKIIKNNTDNKFYY--- 467 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E +L+ L +P++++E +E++ + ++ + L + E Sbjct: 468 --------ENSLIYLLALNPSLIKEAEREISVDLIKKDITREFYIRLLTLNKEASVEDAL 519 Query: 536 EIH--QRLCERGFG----------ELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQAL 582 I + + + E L++L +++ + S E + G++ Sbjct: 520 NILGNEHIANQILSRKKLYSENIYEKLEELIIKIKSGDIDSKRMEIINNHSLNDGFEAIC 579 Query: 583 ALYKRFRLLSRQKEEIEK 600 + LL++QKE++ + Sbjct: 580 EKAREIHLLNKQKEKLHQ 597 >gi|282877030|ref|ZP_06285875.1| DNA primase [Prevotella buccalis ATCC 35310] gi|281300873|gb|EFA93197.1| DNA primase [Prevotella buccalis ATCC 35310] Length = 1037 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 98/464 (21%), Positives = 185/464 (39%), Gaps = 47/464 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ I+ +L I ++G+++ +R Y A CPFH EKTPSF ++ + Sbjct: 2 IPKAIIEKVLDATHIEEVVGEFLSLQKRG-----IIYRALCPFHQEKTPSFTVTPNRSMF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRL 120 YCF CH G+ ++FL +++E+V+ L G+ + + I++K++ + L+ + Sbjct: 57 YCFGCHKGGNAITFLMEHENMTYLEAVKWLGRKYGIEVEEREETIDEKQQRLKRESLLIV 116 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + + + Y R + ++G+AP +L QK F Sbjct: 117 NATVHKHYREVFLRYKPAQDYAY---RRWGQKYCDEIEIGFAPIDGKALAHLPLQKEF-- 171 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + YD F++R++ PI+ +I F R + KYLNS E+ Sbjct: 172 -------LQELGLINKQGYDFFQDRIVIPIKDRYQHIIGFTARVM-DDSQPKYLNSKESF 223 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 L++K ++ A K + + LVEG D + L GVQN V+ LG+ Sbjct: 224 LYNKRNTVFGLDVAWRAAGK----------TEQMYLVEGAPDCMRLHAIGVQNTVADLGS 273 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDP----------GLRAAYKAIDLVLCHLIPGNRVNF 350 A T Q +L+ + ++ D D P + ++ + Sbjct: 274 AWTAEQFQLIKRAVSKVCFIPDNDPPKGGADYGTGIEAVMKAGKLATEQHLIVSVKEIPI 333 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + EDPD++ + + L +LW + +++++ + + Sbjct: 334 TKEGKKEDPDTYFKN------QTLFKAVEEEDFILWLAAKLFETSGNTEQKSDAVKQIAH 387 Query: 411 CINHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKN 453 ++ I D + A+ +LF + E+ R K Sbjct: 388 LLSFIDDDTKLTMFIDALTKYHRGKLFWQKAVENERTRRDSPKE 431 >gi|294502715|ref|YP_003566777.1| DNA primase [Yersinia pestis Z176003] gi|294353174|gb|ADE63515.1| DNA primase [Yersinia pestis Z176003] Length = 508 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 140/522 (26%), Positives = 242/522 (46%), Gaps = 41/522 (7%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F+ES++ LA + G+ +P + + + L +L+E + F+ SLK Sbjct: 1 MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 K+ YL RG+ I+ F +G+AP + + + G S + +AG+L+ +++ Sbjct: 61 NAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET +FHKG+ LY + A Sbjct: 120 GRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 V + + +++VEGYMDV++L Q G+ V+SLGTA T ++LL++ + Sbjct: 178 ---------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228 Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 ++ C+DGD G AA++A++ L +L G ++ F+ L GEDPD+ +R GK AFE+ + Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + PL L++ ++PD RA+L I+ + + LR Y Q + ++L L Sbjct: 289 EAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLL 348 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + + + K + L+ L+ +P Sbjct: 349 DDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNP 388 Query: 496 AILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + Q L + L+ L + Q ++ + + F + L+ L Sbjct: 389 QLATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETL 445 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + E VD ++ ++ L++R + Sbjct: 446 ATW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 485 >gi|218507281|ref|ZP_03505159.1| DNA primase [Rhizobium etli Brasil 5] Length = 202 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 97/193 (50%), Positives = 133/193 (68%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PISN+I + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P+ DP +EK+EK + LI + Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMPLADPVMEKREKERGSLIDV 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 +E+AT FF L+ A + YL +RG+ IE F+LGYAPDSR +L+E L KG S+ Sbjct: 121 MEMATAFFQDQLQTANGAKARAYLRDRGLTGRTIETFRLGYAPDSRNALKEFLAGKGVSK 180 Query: 181 EKIIEAGLLIDGD 193 E+I GL++ + Sbjct: 181 EQIEACGLVVHEN 193 >gi|86159660|ref|YP_466445.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C] gi|85776171|gb|ABC83008.1| DNA primase [Anaeromyxobacter dehalogenans 2CP-C] Length = 452 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 202/470 (42%), Gaps = 33/470 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I++L I +IG+ ++ + + + A CPFH +KTPSF + Sbjct: 2 IPGAVIEELRARIDPVEVIGRRLELRKTGS-----SFSASCPFHADKTPSFRVYPDSRRF 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C +GD FL G F V+ LAA AGV + + + R E Sbjct: 57 KCFGCGARGDAFEFLQRFEGKDFKTVVRELAAEAGVAVEDGARRGVA-APTTGAIERACE 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A + L + YL RG+D + F+LGYA + L L +G E+ Sbjct: 116 AALAHWTGRLWGPEGEPARKYLASRGVDEPTAKRFRLGYAAREWHDLHSALVAQGIPEDD 175 Query: 183 IIEAGLLIDGDNSATS-YDRFRNRLIFPIRSSRGQVIAFGGRTLSKG----ESVKYLNSP 237 ++ AGLL + + +DRFR R++FP R + + F GR + ++ KYLN P Sbjct: 176 LLRAGLLRESTSKGPLAHDRFRGRVMFPFLDGRRRAVGFAGRIIPATGDGAQAPKYLNGP 235 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 ET LF KG ++ A ++ + R I+VEGY+D ++L QAG Q V++ Sbjct: 236 ETPLFRKGHLVFGLAEAAAAIRSTRRA----------IVVEGYLDAIALAQAGRQETVAA 285 Query: 298 LGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR- 355 GTA+TE+QL L+ + +VL FD D PGL + L G L Sbjct: 286 GGTAVTEHQLSLVQRSGAEELVLLFDTDAPGLE---APAQVAPALLKAGLSTRIARLPGA 342 Query: 356 -GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP------DERAELEIHL 408 DPDSF+R +G A E I ++PL + L +R +R+ P +++ + L Sbjct: 343 AAADPDSFLRSHGLRALEAAIDAAVPLTEWLLERAIASRTAKAPTKAISVEQKLLIVRDL 402 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 + + R + Q I RL+ E + Sbjct: 403 RPFVAAAPAGLPRALFEQRIARRLELYIIALRAELARGRGRPAGGESWPR 452 >gi|318604174|emb|CBY25672.1| DNA primase [Yersinia enterocolitica subsp. palearctica Y11] Length = 508 Score = 229 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 139/522 (26%), Positives = 241/522 (46%), Gaps = 41/522 (7%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F+ES++ LA + G+ +P + + + L +L+E + F+ SLK Sbjct: 1 MNYDRLEFVESIEELATMHGLEVPYEAGTGTTQLERHQRQSLYQLMESLSAFYQQSLKGQ 60 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + YL RG+ I+ F +G+AP + + + G S + +AG+L+ +++ Sbjct: 61 NANQAREYLKHRGLSDEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 YDRFR R++FPIR RG+VIAFGGR L KYLNSPET +FHKG+ LY + A Sbjct: 120 GRVYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 V + + +++VEGYMDV++L Q G+ V+SLGTA T ++LL++ + Sbjct: 178 ---------QVSHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228 Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 ++ C+DGD G AA++A++ L +L G ++ F+ L GEDPD+ +R GK AFE+ + Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 E+ PL L++ ++PD RA+L I+ + + LR Y Q + ++L L Sbjct: 289 EEAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGETLRLYLRQQLGNKLGLL 348 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + + + K + L+ L+ +P Sbjct: 349 DDSQLDKLMPKQAENVNTYQPPQLKRTTM--------------------RILIGLLVQNP 388 Query: 496 AILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + Q + + L+ L + Q ++ + + F + L+ L Sbjct: 389 QLATLIPSLQGVEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETL 445 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + E VD ++ ++ L++R + Sbjct: 446 ATW--NHMIVEDMVEQTFVDTLTSLYDSILEQRQETLIARDR 485 >gi|260642309|ref|ZP_05415359.2| putative CHC2 zinc finger [Bacteroides finegoldii DSM 17565] gi|260622757|gb|EEX45628.1| putative CHC2 zinc finger [Bacteroides finegoldii DSM 17565] Length = 1105 Score = 228 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 100/497 (20%), Positives = 195/497 (39%), Gaps = 46/497 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + + I +++ YV R+ + CPFH+E+T SF + +K + Sbjct: 2 ISESTISKVRE-LSIEDVLRPYVKLSRKGS-----ALMGLCPFHEERTGSFSVSPAKNLF 55 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTDLI 118 +CFSC+ GD ++F+ G SF+++V+ +A + + + + +EK + L+ Sbjct: 56 HCFSCNRGGDAITFIMEKEGFSFMDAVRFIAKHHNIQIEYTQEEYNEEQMAEEKHRESLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ +F + L+ + D + +GYAP ++ +++ Sbjct: 116 VALDHIQAYFLNCLRTTDNIECKQARDYAYGRWPEEFCSVAGIGYAPIDGNLFVDYCQKR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 +EE + E G+L G++ Y FR R++ PIR+ G++IA+ R + ++ KY+N Sbjct: 176 SLNEEALFELGMLKRGEDGHI-YAMFRQRIMIPIRNRWGRIIAYTARHIGHNPKAPKYIN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S + ++ KG+ L+ A R+ ++ + I+VEG DVL + G N V Sbjct: 235 SSTSPVYSKGETLFGIDRA-----------SRQRNADYFIIVEGAPDVLRMQSVGFDNTV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------------GLRAAYKAIDLVLC 340 ++LGTA T+ Q L K + + D D G A K + + Sbjct: 284 AALGTAWTDSQFEQLKKYTSSLCFIPDSDVTEGKPYGAGFEAVMANGAMAIRKGFHVTVR 343 Query: 341 HLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 L ED +F K + L + + + F Sbjct: 344 ELPFVKASVVGENIPSEDTFQVKFVKNDADSFIKSKEDYTSLAEKHFIIWLAQKRFLVAS 403 Query: 400 ---ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 E + + + + ++KDQ + + + ++ K + R + Sbjct: 404 SLVEERKCVAEIADLMRYVKDQLVFDQCIEQLAKLHGKV--KLWRDAVAQARGEARKRNE 461 Query: 457 RDQKGPSQRLMQSSLVK 473 R + L + Sbjct: 462 RLAPMNEMQRDAELLRQ 478 >gi|160884371|ref|ZP_02065374.1| hypothetical protein BACOVA_02349 [Bacteroides ovatus ATCC 8483] gi|156110110|gb|EDO11855.1| hypothetical protein BACOVA_02349 [Bacteroides ovatus ATCC 8483] Length = 1105 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 100/497 (20%), Positives = 196/497 (39%), Gaps = 46/497 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + + I +++ YV R+ + CPFH+E+T SF + +K + Sbjct: 2 ISESTISKVRE-LSIEDVLRPYVKLSRKGS-----ALMGLCPFHEERTGSFSVSPAKNLF 55 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTDLI 118 +CFSC+ GD ++F+ G SF+++V+ +A + + + + +EK + L+ Sbjct: 56 HCFSCNRGGDAITFIMEKEGFSFMDAVRFIAKHHNIQIEYTQEEYNEEQMAEEKHRESLL 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ +F + L+ + D + +GYAP ++ +++ Sbjct: 116 VALDHIQAYFLNCLRTTDNIECKQARDYAYGRWPEEFCSVAGIGYAPIDGNLFVDYCQKR 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 +EE + E G+L G++ Y FR R++ PIR+ G++IA+ R + ++ KY+N Sbjct: 176 SLNEEALFELGMLKRGEDGHI-YAMFRQRIMIPIRNRWGRIIAYTARHIGHNPKAPKYIN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S + ++ KG+ L+ A R+ ++ + I+VEG DVL + G N V Sbjct: 235 SSTSPVYSKGETLFGIDRA-----------SRQRNADYFIIVEGAPDVLRMQSVGFDNTV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------------GLRAAYKAIDLVLC 340 ++LGTA T+ Q L K + + D D G A K + + Sbjct: 284 AALGTAWTDSQFEQLKKYTSSLCFIPDSDVTEGKPYGAGFEAVMANGAMAIRKGFHVTVR 343 Query: 341 HLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 L ED +F K + L + + + F Sbjct: 344 ELPFVKASVVGENIPSEDTFQVKFVKNDADSFIKSKEDYTSLAEKHFIIWLAQKRFLVAS 403 Query: 400 ---ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 E + + + + ++KDQ + + + ++ K + R + Sbjct: 404 SLVEERKCVAEIADLMRYVKDQLVFDQCIEQLAKLHGKV--KLWRDAVAQARGEARKRNE 461 Query: 457 RDQKGPSQRLMQSSLVK 473 R + + L + Sbjct: 462 RLEPMNEMQRDAELLRQ 478 >gi|325282203|ref|YP_004254745.1| DNA primase [Odoribacter splanchnicus DSM 20712] gi|324314012|gb|ADY34565.1| DNA primase [Odoribacter splanchnicus DSM 20712] Length = 1075 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 195/485 (40%), Gaps = 37/485 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + +PI N++ YV+ ++ CPFH E+T SF K + Sbjct: 2 ISESTINKVRN-LPIENVLKPYVELSKKG-----LTLMGLCPFHSERTASFSVTAHKNLF 55 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118 +CFSC+ GD ++F+ SF E+++ +A + + + + + + L Sbjct: 56 HCFSCNRGGDAITFIMEKENLSFGEAIKFIAKNHNILIEYIDEEQTDEQRAETRHKESLF 115 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +++ +F +L+ D +GYAP + ++ R K Sbjct: 116 VILDCVQKYFLENLRTNMGNESRMARDYAYGRWTEEFCSTAGIGYAPKDGHDFIDYCRNK 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 +E+ + E GL G + Y FR+R++ PIR+ G++IA+ R + + ++ KY+N Sbjct: 176 SLNEKALFELGLFKRG-EDGSVYAMFRHRIMIPIRNKWGRIIAYTARYIGENKNTPKYIN 234 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S +IL+ KG+ L+ A R+ + + I+VEG DVL + Q G N V Sbjct: 235 SATSILYSKGETLFGIDHA-----------YRQRDTDYYIIVEGAPDVLRMQQVGFDNTV 283 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH----LIPGNRVNFV 351 ++LGT+ +E Q L + + D D + + V+ + + G V Sbjct: 284 ATLGTSWSESQFDQLKPYTSSLCFIPDSDVAEGKTFGPGFEAVMTNGAAAIRKGFYVTVR 343 Query: 352 LLSRGEDP--DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD---ERAELEI 406 L + P I ++ + + L + + + F D E + Sbjct: 344 ELPFAQHPASGEKILKNDADSYIRCREDYTSLKEKHFIVWLAQKRFLVADSLMEERKYVA 403 Query: 407 HLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + + +IKDQ + + +++ + + +K + D + + Sbjct: 404 EIADLLRYIKDQLVFDQCIGQLAKLHGKVKLWRDAVVQARGEAKKKSEKASSMNDLQREA 463 Query: 464 QRLMQ 468 + L Q Sbjct: 464 ELLRQ 468 >gi|224023339|ref|ZP_03641705.1| hypothetical protein BACCOPRO_00032 [Bacteroides coprophilus DSM 18228] gi|224016561|gb|EEF74573.1| hypothetical protein BACCOPRO_00032 [Bacteroides coprophilus DSM 18228] Length = 1094 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 152/336 (45%), Gaps = 25/336 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + +PI ++GQYV + CPFH E TPSF N +K Y Sbjct: 2 ISESTIDKVRE-LPIETIVGQYVKLAKDGR----TSMKGLCPFHSENTPSFSINLNKNLY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDL 117 +CF C+ GD +SF+ +F ++V+ LA + + + K+ + L Sbjct: 57 HCFGCNRGGDGISFIMEKENLNFQQAVRLLAEKFNILMEDEYDEERTDADKAKQAHKDSL 116 Query: 118 IRLIEVATDFFHHSLKNARDKRLHY--YLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 ++E FF +L+ + + + + +GYAP ++ + +Q Sbjct: 117 YAILEKVQTFFTENLRVSANDDSRHAREYAYNRWPENFCAEAGIGYAPRESHTFMDFCKQ 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-SKGESVKYL 234 +G +EE +IE G+L Y FR R++ PIR+ G++IA+ R + + ++ KY+ Sbjct: 177 QGLNEEFLIELGMLRKN-EDDKLYPMFRERIMIPIRNKWGRIIAYTARYIGTHPKAPKYI 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS ++L+ KG+ L+ A R +++ I+VEG DVL L G++N Sbjct: 236 NSVTSLLYTKGETLFGIDRAF-----------RLRNAANFIIVEGAPDVLRLQSIGLENT 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330 V++LGTA E Q +L + + D D Sbjct: 285 VATLGTAWNENQFEILKHYTSSLCFIPDTDLARDSP 320 >gi|300871652|ref|YP_003786525.1| DNA primase [Brachyspira pilosicoli 95/1000] gi|300689353|gb|ADK32024.1| DNA primase [Brachyspira pilosicoli 95/1000] Length = 604 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 151/620 (24%), Positives = 264/620 (42%), Gaps = 57/620 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFY 62 + + LL ++ + +++ R Y CPFH E PS +DSKG Y Sbjct: 7 EKLNQLLSNVSLIDILRDRYKVISRG----GSQYTVQCPFHKDGQEANPSMSVDDSKGIY 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLI 121 CF+C KG+ ++L F E+V+ L K + K+++ + R+ Sbjct: 63 KCFTCGAKGNVFTYLKEKEAMDFKEAVKYLGNRFSFDTSNFFSQKNKHKDQVFVESKRIN 122 Query: 122 EVATDFFHHS--LKNARD----KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 ++A +FF + LKN K YL +R I I+ FK+GYAP S +L + L + Sbjct: 123 KIACNFFGKNLLLKNNNGEYFYKEAIDYLKKRKIPFSIIKEFKIGYAPPSWNALIKALNE 182 Query: 176 KGFSEEKIIEAGL-LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 S I GL I +N YD F NR++FPI + + ++I FGGR++ G+ KYL Sbjct: 183 NNISTNNINALGLASISKNNPNHFYDTFINRIMFPIINEKEEIIGFGGRSI-DGKEPKYL 241 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS E+++F K LY A ++ K +ILVEGYMD ++ + ++NV Sbjct: 242 NSKESLIFKKKSALYGINIAKTHIMKK----------DEVILVEGYMDTIACHKMNIKNV 291 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V SLGTA+TE + + K + +VL D D+ G +A AI L L ++ +L+ Sbjct: 292 VGSLGTAITEEHAKEIKKYTNNVVLALDNDEAGQKATKMAI---LTLLKFDLKLTILLIE 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET-ENRSFNTPDERAELEIHLKNCIN 413 +D D F F+ L + L D L K T ++ + T +E+ + N ++ Sbjct: 349 TTKDLDEFFTINNANGFDILYNKKLAWYDFLLKTSTNKDIALLTIEEKLYIVKLFYNYLD 408 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +K + + I L R R Q S ++ Sbjct: 409 VLKSETEKQMIISHISSELSID------------RDAFNRDYLRTLTNKVQNTKVVSALQ 456 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E +L+ L +P++++E +E+ + ++ + L + + Sbjct: 457 KPIKDNKFYYENSLIYLLALNPSLIKEAEKEIGVDLIKKDITREFYIRLLTLNKDATAED 516 Query: 534 P------EEIHQRLCERG------FGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGY 578 E I ++ + E L++L +++ + E + +G+ Sbjct: 517 ALNVLGNEHIANQIRSKEKLYTDNIQEKLEELIVKIKSGDIDYRREEVLKTTTLQSNEGF 576 Query: 579 QQALALYKRFRLLSRQKEEI 598 + + LL++QKE++ Sbjct: 577 EAICNKAREIHLLNKQKEKL 596 >gi|237725542|ref|ZP_04556023.1| DNA primase [Bacteroides sp. D4] gi|229436229|gb|EEO46306.1| DNA primase [Bacteroides dorei 5_1_36/D4] Length = 1103 Score = 220 bits (561), Expect = 4e-55, Method: Composition-based stats. Identities = 97/488 (19%), Positives = 189/488 (38%), Gaps = 40/488 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ + I +++ YV R+ + CPFH EKT SF SK + Sbjct: 10 ISETTIRKVRELA-IEDVLSPYVRLSRKGS-----TLMGLCPFHSEKTGSFAVTPSKNLF 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118 +CFSC+ GD ++F+ SF +V+ +A +P+ + + + + L+ Sbjct: 64 HCFSCNRGGDSITFIMEKENLSFSAAVEFIARNHNIPVEYIREERSEEQMAEARHRESLL 123 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +++ FF +L+ + +GYAP + + R K Sbjct: 124 TVLDTVQTFFLQNLRTTDKEESLDARAYAYGRWHEEFCAFAGIGYAPKDSQTFMDFCRSK 183 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 +EE + E G+ G++ T Y FR R++ P+R+ G++IA+ R + ++ KY+N Sbjct: 184 ALNEELLYELGMFKRGEDGNT-YAMFRQRIMIPVRNRWGRIIAYTARYIGDNRKAPKYIN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S ++++ KG+ ++ A R + + I+VEG DVL + G N V Sbjct: 243 SATSMIYSKGETVFGIDRA-----------ARLRDADYYIIVEGAPDVLRMQSIGYDNTV 291 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDP---------GLRAAYKAIDLVLCHLIPGN 346 +SLGTA ++ Q L K + D D A + + Sbjct: 292 ASLGTAWSDSQFEQLKKYVSSLCFIPDSDIAEGKPYGPGFEAVMTNGAAAIRKGFHVTVR 351 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF---NTPDERAE 403 + F + G + + ++ + + L + + + F + E + Sbjct: 352 ELPFAEIPSGTEGEVQYAKNDADSYIRSREDYTSLPEKHFIIWLAQKRFLVAGSMVEERK 411 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRD---RLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + + + +IKDQ + + + +++ R K A + + Sbjct: 412 CVAEIADLLRYIKDQLVYDQCIEQLSRLHGKVKLWRDAVTQARGEARRRNDKPAAMNEMQ 471 Query: 461 GPSQRLMQ 468 ++ L Q Sbjct: 472 REAELLRQ 479 >gi|150005932|ref|YP_001300676.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|149934356|gb|ABR41054.1| DNA primase [Bacteroides vulgatus ATCC 8482] Length = 1096 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 118/505 (23%), Positives = 186/505 (36%), Gaps = 37/505 (7%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 D + + +PI +++ YV R + CPFH EKTPSF N SK Y+ Sbjct: 3 SEDTLDKVRE-LPIESIVEPYVKLSRDGR----LNMKGLCPFHSEKTPSFSLNLSKNLYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-----PVVDPKIEKKEKIQTDLI 118 CF C+ GD + F+ SF ++V LA G+P+ + ++K + L+ Sbjct: 58 CFGCNRGGDGIRFIMEKENLSFTDAVHFLAKQHGIPVDYEKEEEQSGEAIAEQKHKESLL 117 Query: 119 RLIEVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +++ FF SL+ Y R LGYAP + R++ +Q Sbjct: 118 AALDILQTFFVDSLRLATTEDSWNARCYAYNRWP-EDFCSEAGLGYAPKDSNAFRDYCQQ 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYL 234 KG EE + E G+L TSY FR R++ PIR+ G++IA+ R + KY+ Sbjct: 177 KGLKEELLFELGMLKRK-EDGTSYPMFRERIMIPIRNRWGRIIAYTARYIGANPHAPKYI 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS ++L+ KG+ L+ A R + I+VEG DVL L G++N Sbjct: 236 NSATSVLYTKGETLFGIDRAF-----------RLRDAENFIIVEGAPDVLRLQSIGLENT 284 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 V+SLGT+ E QL LL + + D D V+ R F Sbjct: 285 VASLGTSWNENQLNLLKRYKSSLCFIPDSDVAPEGQYGPGFKAVMECGTLAIRKGFHATV 344 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLV-------DMLWKRETENRSFNTPDERAELEIH 407 + P + ++ ++P + + Sbjct: 345 KEL-PFGTWEL-TEDELQEKYEGTIPKDAQREVLVKNDADSYILSEEIYRNLREKHFIVW 402 Query: 408 LKNCINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 L LR I D L+ + +++ E + +Q Sbjct: 403 LAEKQFATASSLLREINCVNQIADLLRYVKDQFVYEQCIEQLSKIYGKARLWKDAVTQAR 462 Query: 467 MQSSLVKGKLSKKPSLREAALLLTL 491 Q+ K E L L Sbjct: 463 NQAKRAKQPTMMDKQQEETDALRQL 487 >gi|313678637|ref|YP_004056377.1| DNA primase [Mycoplasma bovis PG45] gi|312950814|gb|ADR25409.1| DNA primase [Mycoplasma bovis PG45] Length = 646 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 121/670 (18%), Positives = 248/670 (37%), Gaps = 81/670 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + +++ I +++ +++ ++ Y A CPFH++ PS + + Sbjct: 3 RVPNEIANNIISANDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDSRRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT------ 115 + CF C+ G+ L+FL S+ ES++ LA AG+ + D I + + Sbjct: 58 FKCFVCNTGGNALTFLKLFKKWSYAESLKYLADKAGIEFIIPDISINEYQNESKLSETDI 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + ++ A F+ L + + +L R + + + +GYAP +R+ Sbjct: 118 KVYEALDKANSFYKSELVKTDNPVIKAFLKNRNLSYNDCNKYDIGYAPIARFRDVFATEI 177 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + I + + ++ + F+NR+ F IR +++ F R L KY+N Sbjct: 178 ENDLSILINASLVSLNTKE-----EFFKNRITFGIRDEYNKIVGFSARAL-DDSKPKYIN 231 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E F K LYN + + II+ EG+ DV++L + + + Sbjct: 232 SSENYYFKKSSILYNLNNIYESA-----------NFNQIIITEGFFDVIALNKCNIPEAI 280 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +GTALT+ + L + +I+L DGDD G + +K I +L + V + Sbjct: 281 CLMGTALTKEHVYKL-QKFKKIILFLDGDDAGQESTFKTIKTLLQNNYTNI--YVVKNNS 337 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET--------ENRSFNTPDERAELEIH 407 DPD + +G A + LI ++ + ++ N + + Sbjct: 338 NLDPDELLNTHGPEAVKSLINDASLYIYFIYDYLRIKFGLYDGYNIIEVNEMQFQKFGSE 397 Query: 408 LKNCINHIK-------DQKLRYYYSQAIRDRLQQ--------LFQKYITEHSGYGRYWKK 452 + ++KL+ Y++ I + + Q I ++ Y Sbjct: 398 FYPFWLKLSQNAATVFNEKLKKEYNRDINFIIDKGNSFNNDFSTQDNINLNNYDEFYDIN 457 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE------AALLLTLINHPAILQEQYQELA 506 + + D SQ + KP +E +LL L+++P + + Y+ + Sbjct: 458 SMPYYDDVVDSQNYNRVPNFSNPKLYKPVKQEYKQNWIEKMLLILLHYPNLQEFFYKNHS 517 Query: 507 DIRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + + +L+ ++ L + +I Q+ E G + + Sbjct: 518 KFPFESIELNSNTLEFDKDLKAIYKKLINHTKISPE-EANKIIQKFSEEGKDHFINKFHF 576 Query: 556 QVRD--------AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQIAQVT 606 RD A ++ + ++ L ++ + +EI ++ Q Sbjct: 577 STRDIVQLEKDFAEIYKRARDDDLKRYNSYIVNDLGANSSGLEINNKIVKEILEKQRQNK 636 Query: 607 AKGEAEKTAI 616 K + E Sbjct: 637 LKMDDEDQNE 646 >gi|212693061|ref|ZP_03301189.1| hypothetical protein BACDOR_02568 [Bacteroides dorei DSM 17855] gi|212664347|gb|EEB24919.1| hypothetical protein BACDOR_02568 [Bacteroides dorei DSM 17855] Length = 1102 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 98/490 (20%), Positives = 190/490 (38%), Gaps = 39/490 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I+ + I +++ YV R+ + CPFH EKT SF S+ + Sbjct: 9 ISETTIQKVRELA-IEDVLSPYVRLSRKGS-----TLMGLCPFHTEKTGSFAVTPSRNLF 62 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDLI 118 +CFSC+ GD ++F+ SF +V+ +A +P+ + + + + L+ Sbjct: 63 HCFSCNRGGDSITFIMEKENLSFSAAVEFIARNHNIPVKYISEERSEEQMSEARHRESLL 122 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERG--IDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +++ FF +LK + +GYAP + + R K Sbjct: 123 TVLDAVQTFFLQNLKATDKEESLDARAYAYGRWHEEFCAFAGIGYAPKDGQAFMDFCRNK 182 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLN 235 +EE + E G+ G++ T Y FR R++ P+R+ G++IA+ R + ++ KY+N Sbjct: 183 ALNEELLYELGMFKRGEDGNT-YAMFRQRIMIPVRNRWGRIIAYTARYIGDNRKAPKYIN 241 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S ++++ KG+ ++ A R + + I+VEG DVL + G N V Sbjct: 242 SATSMIYSKGETVFGIDRA-----------ARLRDADYYIIVEGAPDVLRMQSIGYDNTV 290 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH----LIPGNRVNFV 351 +SLGTA ++ Q L K + D D + + V+ + + G V Sbjct: 291 ASLGTAWSDSQFEQLKKYVSSLCFIPDSDIAEGKPYGPGFEAVMTNGAAAIRKGFHVTVR 350 Query: 352 LLSRGEDPDS-----FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF---NTPDERAE 403 L E P ++ + + L + + + F ++ E + Sbjct: 351 ELPFAEIPSEAEGEVQYSKNDADSYIRSREDYTSLPEKHFIIWLAQKRFLVASSMVEERK 410 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + + +IKDQ + + + ++ K + R + + Sbjct: 411 CVAEIADLLRYIKDQLVYDQCIEQLSRLYGKV--KLWRDAVTQARGEARRRNDKPAAMNE 468 Query: 464 QRLMQSSLVK 473 + L + Sbjct: 469 MQREAELLRQ 478 >gi|148377532|ref|YP_001256408.1| DNA primase [Mycoplasma agalactiae PG2] gi|148291578|emb|CAL58964.1| DNA primase [Mycoplasma agalactiae PG2] Length = 645 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 120/669 (17%), Positives = 245/669 (36%), Gaps = 80/669 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +++ I +++ +++ ++ Y A CPFH++ PS + + Sbjct: 3 RVSNEIANNIIASNDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDTRRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116 + CF C+ G+ L+FL S+IES++ LA AG+ + E + + Sbjct: 58 FKCFVCNTGGNALTFLKLFKKWSYIESIKYLANKAGIDFDYSENTYESDNQNKLSQTDIK 117 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + +++ A F+ L + + + +L +R + + + +GY P R +E + Sbjct: 118 VYEVLDKANSFYKSELIKSNNPVIQAFLKKRNLSYNDCNKYDIGYVPVMR--FKEVFASE 175 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +E I+ LI +N + NR+ F IR+ + Q++ F RTL KY+NS Sbjct: 176 IENELSILTNASLISPNNKEEFFK---NRITFGIRNEQNQIVGFSARTL-DDSKPKYINS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 + F K LYN + ++ + II+ EG+ DV++L + + V Sbjct: 232 SDNNYFKKSSILYNLN-----------NVYQESNFNQIIITEGFFDVIALNKCNINEAVC 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +GTALT+ + L + +I+L DGD+ G + +K I +L + V + Sbjct: 281 LMGTALTKEHVYKL-QKFKKIILFLDGDNAGQESTFKTIKTLLQNNYTNI--YVVKSNNK 337 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR--------SFNTPDERAELEIHL 408 DPD + YG A + LI ++ + ++ + + Sbjct: 338 LDPDELLNTYGADAVKNLINDASLYIYFVYDYLRLKFGLYDGFNIINVNEMQFQKFGTEF 397 Query: 409 KNCINHIK-------DQKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNA 454 ++ ++KL+ Y++ I + + Y + + N Sbjct: 398 YPFWAYLSQNAASVFNEKLKKEYNRDINFIIDKGKNFNNDFSTFNNVNLNNYDKPYDYND 457 Query: 455 RHR-------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 L K + +LL L+++P + + Y+ + Sbjct: 458 SFYYDGIVDSQSFNEQPSFNSPKLYKPIKQEYKQNWIEKMLLILLHYPNLQEFFYKNYSK 517 Query: 508 IRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + N +L+ ++ L + + I ++ E G + +L+ Sbjct: 518 EPFESIELNSSALEFNKDLKVIYKKLINHIKIDEGESKS-IIKKFTEEGKDLFISKLNFD 576 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------LSRQKEEIEKQIAQVTA 607 +D R + Y L + +EI ++ Q Sbjct: 577 NKDIVQLENDFAEIYKRARDDDLKRYNYYIVNDLGANGSGIFTNDKIVKEILEKQRQNKL 636 Query: 608 KGEAEKTAI 616 K + E+ Sbjct: 637 KMDDEEQNE 645 >gi|67809712|gb|AAY81975.1| DNA primase [Wolbachia pipientis] Length = 494 Score = 217 bits (553), Expect = 3e-54, Method: Composition-based stats. Identities = 146/543 (26%), Positives = 239/543 (44%), Gaps = 58/543 (10%) Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD F+S G SF E++++LA++ GV LP ++ K L +++A Sbjct: 1 FGCLASGDAFEFISQTEGLSFKEALEKLASVTGVELPKNLSITKEDNK----LFLALDLA 56 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 ++F ++ + YL +R I I+ FK+GYAP S L+E+L G + +I Sbjct: 57 ANWFAQK-----NQGVVDYLKQRKISPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILI 109 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + GL+ D F +RLIFPI+S G+VI FGGR LS + KYLNSPE+ LF K Sbjct: 110 DIGLVNKN-----FRDYFYDRLIFPIQSIAGRVIGFGGRVLSSEQQPKYLNSPESQLFKK 164 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 +NLY AL+ ++K I++VEGYMD ++L QAG+ N V+ LGTA++ Sbjct: 165 RENLYGLNFALSEIRKK----------QHILVVEGYMDTIALHQAGISNAVAPLGTAISA 214 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 Q++ LW+ + I +C DGD G AA + +L L L PG + FV L +DP Sbjct: 215 EQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLKFVTLPSNKDPYDICN 274 Query: 365 --CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHLKNCINHIKD 417 Y K + S L +N P++ + LE +N I + Sbjct: 275 ELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYSILEHKFMEYVNTISN 334 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 +R YY ++ +E + N++ R KG L++ + + Sbjct: 335 SSIRRYYRDYFYNK--------ASELRSSFKKQIFNSKTRATKGEYLHNKSPELIEAEQN 386 Query: 478 KKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +A +L + P IL +++ + + N E+++L + + E Sbjct: 387 ------QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRIIDVISNKNKLDKE 439 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + Q L + + ++ N + + L K L +++ Sbjct: 440 ALLQELKQFNVI--------KYAFEKTSVLNSQLNERKSAEIVWNNIVLLKELNALRKER 491 Query: 596 EEI 598 E Sbjct: 492 TEA 494 >gi|262364692|gb|ACY61249.1| DNA primase [Yersinia pestis D182038] Length = 413 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 127/423 (30%), Positives = 211/423 (49%), Gaps = 34/423 (8%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F+ES++ LA + G+ +P + + + L +L+E + F+ SLK Sbjct: 1 MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 K+ YL RG+ I+ F +G+AP + + + G S + +AG+L+ +++ Sbjct: 61 NAKQAREYLKHRGLSEEIIQHFAIGFAPPGWDNALKRFGRDGESRTALNDAGMLV-TNDT 119 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET +FHKG+ LY + A Sbjct: 120 GRTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA- 177 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 V + + +++VEGYMDV++L Q G+ V+SLGTA T ++LL++ + Sbjct: 178 ---------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATD 228 Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 ++ C+DGD G AA++A++ L +L G ++ F+ L GEDPD+ +R GK AFE+ + Sbjct: 229 NVICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRM 288 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + PL L++ ++PD RA+L I+ + + LR Y Q + ++L L Sbjct: 289 EAAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLL 348 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + + + K + L+ L+ +P Sbjct: 349 DDSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNP 388 Query: 496 AIL 498 + Sbjct: 389 QLA 391 >gi|213026990|ref|ZP_03341437.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 190 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 7/181 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIR 119 Y+CF C G+ + FL F+E+V+ LAA+ + +P + + + +L + Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAGTGLSQIERHQRQNLYQ 118 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L+ DF+ SL + K YL +RG+ + I+ F +G+AP + + Sbjct: 119 LMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGFAPPGWDNALKRFGNNSDK 178 Query: 180 E 180 + Sbjct: 179 Q 179 >gi|254881889|ref|ZP_05254599.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|319641109|ref|ZP_07995812.1| hypothetical protein HMPREF9011_01409 [Bacteroides sp. 3_1_40A] gi|254834682|gb|EET14991.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|317387240|gb|EFV68116.1| hypothetical protein HMPREF9011_01409 [Bacteroides sp. 3_1_40A] Length = 1100 Score = 215 bits (546), Expect = 2e-53, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 192/485 (39%), Gaps = 43/485 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 I + I +++ YV R+ + CPFH E+T SF K + Sbjct: 10 ISESTINKVRNLA-IEDILKPYVRLSRKGS-----TLMGLCPFHSERTGSFAVTPGKNLF 63 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 +CFSC+ GD ++F+ +F+E+V +A G+P+ D + + K + L+ Sbjct: 64 HCFSCNRGGDGITFIMEKENLTFMEAVTFIAKNNGIPIEYSDEERSEEELAEAKHKESLL 123 Query: 119 RLIEVATDFFHHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++ FF +L+ + + + +G+AP + E+ R K Sbjct: 124 ITLDHLQRFFVENLRVAMTEENQAAREYAYGRWSEEFCSIAGIGFAPKDGNTFMEYCRTK 183 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLN 235 G +EE + E G+L + Y FR R++ PIR+ G++IA+ R + E KY+N Sbjct: 184 GLNEEFLFELGMLKRN-EDGSIYAMFRQRIMIPIRNRWGRIIAYTARYIGNNEKAPKYIN 242 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S +I++ KG+ L+ A R+ + + I+VEG DVL + G N V Sbjct: 243 SSTSIIYSKGETLFGIDRA-----------SRQRDADYYIIVEGAPDVLRMQSVGFDNTV 291 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID---------LVLCHLIPGN 346 ++LGTA T+ Q L K + + D D + + + + Sbjct: 292 AALGTAWTDSQFEQLKKFTASLCFIPDSDTAEGKPYGAGFEAVMANGASAIKKGFHVTVR 351 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + F + D DS+I C ++ ++W + + E + Sbjct: 352 ELPFAEQNGKNDADSYIHC------KEDYSSLKEKHFIVWLAQKRFCMAGSLMEERKCVA 405 Query: 407 HLKNCINHIKDQKLRYYYSQA---IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + + ++KDQ + + + +++ + + + + + Sbjct: 406 EIADLLRYVKDQLIFDQCIEQLGKLHGKVKLWRDAVTQARGEAKKKQGHGSSMNEMQREA 465 Query: 464 QRLMQ 468 + L Q Sbjct: 466 ELLRQ 470 >gi|308061510|gb|ADO03398.1| DNA primase DNA G [Helicobacter pylori Cuz20] Length = 523 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 106/380 (27%), Positives = 169/380 (44%), Gaps = 30/380 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + L I I ++ Y+D+ + N + ACCPFHDE++ SF + K Sbjct: 1 MKITN--LAPLKDRIQIMEVLESYIDFHKVGAN-----FKACCPFHDERSASFIVSPEKN 53 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GD L FL SF+E+V+ +A I PL K + L + Sbjct: 54 IYHCFGCGVSGDALKFLQEYKKLSFLEAVEEVAKIYNYPLEYETD---AKIERNNHLKEI 110 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A + F LKN K L+Y R I IE + LGY + ++ F+ Sbjct: 111 LAYANNLFKERLKNEP-KVLNYLTQTRAISLEMIEAYDLGYCLHGD----LEVLKERFNA 165 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-----RTLSKGESVKYLN 235 + +I GL + + R+ P++ S+GQ+ +F R L + KYLN Sbjct: 166 DDLIACGLFSNKNEDKELRSFCNYRITIPLKDSKGQIRSFSARLCIPRLLKANNAPKYLN 225 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 ET L++K LYN+ AL +++ +I+ EG+ DVL+ +N + Sbjct: 226 GRETSLYNKTFFLYNYHRALETIKQK----------KQVIICEGFFDVLAYEHFYYKNAI 275 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + GTA T+ L L KL+ + FD D+ G A +A+DL L + + V + S Sbjct: 276 CTSGTAFTKEHLAFLNKLNVELCFSFDNDNAGTEATIRALDLCLKNHVTNMSVIKIKDSS 335 Query: 356 GEDPDSFIRCYGKTAFEKLI 375 +D + + + K+ Sbjct: 336 VKDLSDYQKLNKRPNLAKIN 355 >gi|332140161|ref|YP_004425899.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] gi|327550183|gb|AEA96901.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] Length = 215 Score = 212 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 54/167 (32%), Positives = 85/167 (50%), Gaps = 10/167 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PRDFI DLL + ++ V + N Y ACCPFH+EK+PSF + K F Sbjct: 4 KIPRDFIDDLLSRTDVVEVVDSRVKLKKAGKN-----YQACCPFHNEKSPSFTVSQDKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDL 117 ++CF C G+ +SF+ F+E+++ LA G+ +P E+K++ Q D Sbjct: 59 FHCFGCGAHGNAISFIMEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDD 118 Query: 118 IRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAP 163 ++E FF H L+ K+ YL RG+ ++ +++GYAP Sbjct: 119 YAVMEQVARFFQHQLRQNGNSKKAIEYLKNRGLSGDIVKQWEIGYAP 165 >gi|302545595|ref|ZP_07297937.1| DNA primase [Streptomyces hygroscopicus ATCC 53653] gi|302463213|gb|EFL26306.1| DNA primase [Streptomyces himastatinicus ATCC 53653] Length = 401 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 105/415 (25%), Positives = 179/415 (43%), Gaps = 23/415 (5%) Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFFH 129 D + F+ + SF E+++RLA+ AG+ L +++ +T L+ A F+ Sbjct: 1 DTVDFVMKIDHLSFSETIERLASQAGITLRYEQGSATPGRQQGERTRLVEAHRAAAQFYV 60 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 L + +L ERG D A + F +GY+P L +LR +GF++ ++ +GL Sbjct: 61 EQLDGPEAEIGRKFLAERGFDQAAAQHFGVGYSPAGWDHLVRYLRGRGFTDRELTLSGLA 120 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNL 248 D DRFR RL++PIR G+V+ FG R L ++ KYLN+PET L+ K L Sbjct: 121 --QDGRRGPIDRFRGRLMWPIRDITGEVVGFGARKLRDDDNGPKYLNTPETPLYKKSHVL 178 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y A + K+ R ++VEGY DV++ AGV +++ GT+ ++ Sbjct: 179 YGIDLAKKDIAKTSRA----------VVVEGYTDVMACHLAGVTTAIATCGTSFGGDHIK 228 Query: 309 LLWKLSP-----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 +L +L +V FDGD G +AA +A + + G DP Sbjct: 229 ILRRLLMDNSGAEVVFTFDGDAAGQKAALRAFEDDQKFAA---ETYIAITPGGMDPCDLR 285 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 +G A E L+ L + ++ + +T RA + IK+ +++ Sbjct: 286 LAHGDGAVEALVESRTQLFEFAIRQIVARHNLDTAVGRAAALDEAAPVVAGIKNSSIQHE 345 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + L L +++ + W ++ + P QR G Sbjct: 346 SAVHLAGLLGILDTQFVVQRVSQLARWARDRGRGGDQRPDQRGRPQHRGAGPGGP 400 >gi|257457791|ref|ZP_05622952.1| DNA primase [Treponema vincentii ATCC 35580] gi|257444841|gb|EEV19923.1| DNA primase [Treponema vincentii ATCC 35580] Length = 240 Score = 210 bits (535), Expect = 4e-52, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 12/247 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I + H + +L+ Y ++R D+W CCPFH+EKTPSFH K Sbjct: 3 KITTETIDAVNNHTDLVSLVENYTHLEKRG-----HDWWGCCPFHNEKTPSFHVIPDKKM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 YYCF C G + FL + SF E+V+ LA AG+P+ ++ I+ L+ Sbjct: 58 YYCFGCGAGGSTVKFLMEMEKLSFTEAVEALAKRAGIPVVYAEGSYSPAPEDSIKETLLE 117 Query: 120 LIEVATDFFHH-SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + + FH+ L YL+ RG+ + IE F LGYAP R L + L+ KG+ Sbjct: 118 LYKRVSGTFHYFLLHVPEGAAALRYLEGRGVSAEMIEQFNLGYAPADRRWLFKFLQTKGY 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 S E + ++GL + + NR++FPI + GQ +AFGGR L +GE KYLN+ + Sbjct: 178 SAEFLAKSGLFSKKHPEVSFFS---NRIMFPICNRHGQPVAFGGRIL-EGEGPKYLNTGD 233 Query: 239 TILFHKG 245 + K Sbjct: 234 LPQYKKR 240 >gi|291320190|ref|YP_003515451.1| DNA primase [Mycoplasma agalactiae] gi|290752522|emb|CBH40494.1| DNA primase [Mycoplasma agalactiae] Length = 645 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 114/669 (17%), Positives = 241/669 (36%), Gaps = 80/669 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + +++ I +++ +++ ++ Y A CPFH++ PS + + Sbjct: 3 RVSNEIANNIIASNDIVDVLRDFIELRKKG-----QSYVALCPFHNDTNPSMSIDTRRQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD----- 116 + CF C+ G+ L+FL S+IES++ LA AG+ + E + + Sbjct: 58 FKCFVCNTGGNALTFLKLFKKWSYIESLKYLANKAGIDFDYSENTYESDNQDKLSQTDIK 117 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + ++ A F+ L + + + +L +R + + + +GYAP R+ + Sbjct: 118 VYEALDKANSFYKSELIKSNNPVIQAFLKKRNLSYNDCNKYDIGYAPVMRFKEVFASEIE 177 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++ + F+NR+ F IR+ + Q++ F R L KY+NS Sbjct: 178 HELSILSNASLISLNNKE-----EFFKNRITFGIRNEQNQIVGFSARAL-DDSKPKYINS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 + F K LYN + ++ + I++ EG+ DV++L + + + Sbjct: 232 SDNNYFKKSSILYNLN-----------NVYQESNFNQIVITEGFFDVIALNKCNINEAIC 280 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +GTALT+ + L + +I+L DGD+ G + +K I +L + V + Sbjct: 281 LMGTALTKEHVYKL-QKFKKIILFLDGDNAGQESTFKTIKTLLQNNYTNI--YVVKSNNK 337 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR--------SFNTPDERAELEIHL 408 DPD + YG A + LI ++ + ++ + + Sbjct: 338 LDPDELLNTYGAHAVKNLINDASLYIYFVYDYLRLKFGLYDGFNIINVNEMQFQKFGTEF 397 Query: 409 KNCINHIK-------DQKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNA 454 ++ ++KL+ Y++ I + + Y + N Sbjct: 398 YPFWAYLSQNAASVFNEKLKKEYNRDINFIIDKGKNFNNDFSTFNNVNLNNYDEPYDYND 457 Query: 455 RHR-------DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 L K + +LL L+++P + + Y+ + Sbjct: 458 SFYYDDIVDSQSFNEQPNFSSPKLYKPIKQEYKQNWIEKMLLILLHYPNLQEFFYKNYSK 517 Query: 508 IRY-----------DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + N +L+ ++ L S + I ++ E G +++L+ Sbjct: 518 EPFESIELNSSALEFNKDLKVIYKKLISRIKIDESESKS-IIKKFTEEGKDLFIRKLNFD 576 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRL---------LSRQKEEIEKQIAQVTA 607 +D R + Y L + +EI ++ Q Sbjct: 577 NKDIVQLENDFAEIYKRARDDDLKRYNYYIVNDLGANGSGIFTNDKIVKEILEKQRQNKL 636 Query: 608 KGEAEKTAI 616 K + E+ Sbjct: 637 KMDDEEQNE 645 >gi|144575119|gb|AAZ43863.2| DNA primase [Mycoplasma synoviae 53] Length = 612 Score = 210 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 113/609 (18%), Positives = 231/609 (37%), Gaps = 67/609 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + I ++I ++ ++ N Y CPFH++K S N++K Sbjct: 1 MKIS-ELKDLINQKLNIVSVISNFISLSKKGNN-----YIGLCPFHEDKNASLTTNETKK 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----D 116 Y CFSC G + F+ SF+E+++ A +A + ++ ++ T Sbjct: 55 IYKCFSCGEAGGIVEFIQKFKKISFMEALKIAATMANIDESEFSFLNKEFKQNFTYDQIK 114 Query: 117 LIRLIEVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + L++ F+ + LK+ + + + F +G+A + + Sbjct: 115 IYDLLDFTNTFYKTNYLKSELARNYAKE--RKIDSPQIRQRFDIGFADNK--------TK 164 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + E L G + NRL F IR+ G+++AF GR L+ S KY+N Sbjct: 165 EYLIENDYQLNELKNAGIINENFNSIINNRLTFGIRNQDGKIVAFSGRDLTNNSSAKYVN 224 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E ++F K LYN+ A + + + + +VEG+MDV++ +AG++NV+ Sbjct: 225 STENLVFKKSSILYNYHNAKDEI----------FNKKEVYIVEGFMDVIAFYKAGIENVI 274 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +G L+ + LL +I L D D G A YK L+ N V+ + + Sbjct: 275 AIMGVELSSAHINLLKG--VKINLFLDNDQAGKIATYK---LIKKLANHNNVVSVIKNTY 329 Query: 356 GEDPDSFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--I 412 +D D + GK + L + +D + E+ + N + + + Sbjct: 330 NKDADEILLSQGKEVLIKMLNENKVSAIDFAFNSLFEDFNLNKQKDFNNINEFCRKIDDT 389 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 + ++ Y + I+++L + + S R + +N K + L+ Sbjct: 390 FGLAPPSIKNYLTSLIKEKLNFDY---KFKASFTPRSFSENKPVYKPKINEKNLLIKLKA 446 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY-----DNNELQKLWSFLFSDFV 527 + + LL+ L+++P ++ + + ++ + Sbjct: 447 EKRN---------ELLIMLLSNPDMVNYFFDDSLKWELLTQGTSDDFYSHYEKNISIKDK 497 Query: 528 EQKYFLPEEIHQRLCERGFGE-----------LLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + I L ++ + E LL + V + + +D Sbjct: 498 SKSDQIKAGIVNFLHKKIYSELSKTYLVDEKQLLDLIKNYVDQNWDYWILKDKENIDTIN 557 Query: 577 GYQQALALY 585 ++ L Sbjct: 558 QIRRITRLL 566 >gi|54020012|ref|YP_115576.1| DNA primase [Mycoplasma hyopneumoniae 232] gi|53987185|gb|AAV27386.1| DNA primase [Mycoplasma hyopneumoniae 232] Length = 614 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 128/651 (19%), Positives = 246/651 (37%), Gaps = 71/651 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ I ++ + I +LI + ++ + + CPFH++ PS + K + C Sbjct: 4 QEIITHIIKNTDIYDLISKKINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122 FSC G+ ++F+ + +F+E++Q L + L + K + +R E Sbjct: 60 FSCQKSGNIINFVMLVQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119 Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 A + +L N +L +L RGI IE FK+G+ P + Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFSQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + K F E ++ LL N D F+ RL+FPI + G+V+ F GR L Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234 Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNS LF K + LYN+ A+ II+ EG+ DV++ + Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIK------------QKPKEIIITEGFFDVIAFYK 282 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 AG+QN V+ +GT LT+ +L + ++L D D G+ A+ K+ + Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G+DPD + +G A + + D + + N+ +E Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + + Q L+ +Q ++++ F N K ++ Sbjct: 398 SPFLEILYHQNLQ--LAQIFFKKIKEDFGVSQDSFKFRPSVQHYNELENTLKENEDQIKS 455 Query: 469 SSLVKG------KLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQK 517 + K ++E +L ++++ IL + ++ ++ N K Sbjct: 456 IHIKKTTNLLCLAKPISTEIQELKILSQVLDN--ILYDDGEKYNRFKGKQFKFLNPLNNK 513 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVD 573 L + + F + + E+I +L E L+ ++++ + + W A+ +D Sbjct: 514 LMEEI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKGRIEKLINEDLNWKKEKNADDLD 572 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 Q K + + Q+ + E + + Sbjct: 573 NLMELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 614 >gi|255013384|ref|ZP_05285510.1| DNA primase [Bacteroides sp. 2_1_7] Length = 580 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 123/657 (18%), Positives = 213/657 (32%), Gaps = 97/657 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D + + I + Y+ R D A CPFHDE+ PSF + + Sbjct: 2 ITHDTLLRVRETARIDEVAAGYLTLRRSGK-----DLVALCPFHDERHPSFRISPALNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 CFSC D + + + GC F E+V+ LA G+ + E + + + ++R Sbjct: 57 KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEEAGRHEARQAILRGN 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E F SL DE G E Sbjct: 117 EA----FARSLLPYDPAEGITGEDENG------------------------EEDLRALRE 148 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPET 239 G+ I ++ + RFR RL+FP+R + GQ+ F GR + KY+NS ++ Sbjct: 149 TFSHFGVGICPPDAPEGFRRFRRRLVFPVRITGGQIAGFAGRYRGTEGAGTAKYVNSDDS 208 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +HKG+ LY + A+ ++ + ++L EGY DV++ AG+++ G Sbjct: 209 EAYHKGRILYGLYEAVRAVR----------AEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE +R++ +L+ + L D D G A ++ L L G V + L G DP Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLARGCEVGLLPLPGGMDP 315 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D R G A +L+ + A + I + Sbjct: 316 DEVFRRQGAEALRRLV---RTEAVDYLSHRIREAAGRKGGPDAGGIRDVLGEIRLVGSPL 372 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + E S P + + Sbjct: 373 AVYRRMEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVATGLPP 417 Query: 480 PSLREAALLLTLI-NHPAILQE-----------QYQELAD--IRYDNNELQKLWSFLFSD 525 LRE ALL + NH + EL+ + L + Sbjct: 418 ARLRERALLRFCLANHDRMFYAGDGSGISLPAWVASELSAGGMPLTEPAHLDL----LAL 473 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L+ L + G E ++ + Sbjct: 474 LSGGGHPDG------ITDESLSALILSLRSSYPEEG----PPERLPDELLPDEAERQLFL 523 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640 + + + ++ T+ E + + +I + +++ +EG Sbjct: 524 YAEPFIHDRLQRTAARLRSATSTDERATCLKELRDCFALSDRIGRALGSQSVRRVEG 580 >gi|312601027|gb|ADQ90282.1| DNA primase [Mycoplasma hyopneumoniae 168] Length = 613 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 129/648 (19%), Positives = 250/648 (38%), Gaps = 66/648 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ I ++ + I +LI + ++ + + CPFH++ PS + K + C Sbjct: 4 QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122 FSC G+ ++F+ L +F+E++Q L + L + K + +R E Sbjct: 60 FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119 Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 A + +L N +L +L RGI IE FK+G+ P + Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + K F E ++ LL N D F+ RL+FPI + G+V+ F GR L Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234 Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNS LF K + LYN+ A+ K II+ EG+ DV++ + Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 AG+QN V+ +GT LT+ +L + ++L D D G+ A+ K+ + Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G+DPD + +G A + + D + + N+ +E Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397 Query: 409 KNCINHIKDQKLR--YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-RHRDQKGPSQR 465 + + Q L+ + + I++ + S +N + + + S Sbjct: 398 SPFLEILYHQNLQLAQIFFKKIKEDFGVSQDSFKFRPSVQYYNELENTLKENEDQIKSIH 457 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQKLWS 520 + +++ + ++E +L ++ IL + ++ ++ N KL Sbjct: 458 IKKTNNLWLAKPISTEIQELKILSQVL--DDILYDDGEKYNRFKGKQFKFLNPLNNKLME 515 Query: 521 FLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQ 576 + + F + + E+I +L E L+ ++++ + + W A+ +D Sbjct: 516 EI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKDRIEKLINEDLNWKKEKNADDLDNLM 574 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 Q K + + Q+ + E + + Sbjct: 575 ELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 613 >gi|330898882|gb|EGH30301.1| DNA primase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 128 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 63/129 (48%), Gaps = 7/129 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 IEVATDFFH 129 + A +F+ Sbjct: 120 LTAAAEFYR 128 >gi|26553795|ref|NP_757729.1| DNA primase [Mycoplasma penetrans HF-2] gi|26453802|dbj|BAC44133.1| DNA primase [Mycoplasma penetrans HF-2] Length = 688 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 121/667 (18%), Positives = 254/667 (38%), Gaps = 79/667 (11%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++I DL+ I +++ Y+ ++ DY A CPFH ++ PS + SK + Sbjct: 7 NNNWISDLVKSYSIVDVVQHYLQLSKKGN-----DYKAICPFHADRNPSLSVSPSKNVFK 61 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP---LPVVDPKIEKKEKIQTDLIRL 120 CF+C+ GD L F+ ++ E+++ I + L K + + Sbjct: 62 CFTCNTGGDSLRFIMLYKKITYTEAIKEFKTIFNITDPNLDRYINSTSKVNEEDQKIYNA 121 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A+ +++++L + + YL +R ID I+ +++G+AP +L + S Sbjct: 122 NKKASFYYNNTLYAKENIKCLQYLKDRHIDDELIKFYEIGFAPKLPRDYLLNLFESTKSN 181 Query: 181 EKIIEAGL----LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 I L L+ + D F +RLI PI++ G + F GRT+S E +KY+N+ Sbjct: 182 HNIDNYQLLNAGLVSLTDKNEFIDFFHDRLIIPIKNEFGNIAGFSGRTISPNEKIKYINT 241 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 T +F K L+N F + I +VEGYMDV + + G++NV++ Sbjct: 242 KTTTVFQKENILFNLF------------AFDKTKYEEIFIVEGYMDVFAFRRLGIENVIA 289 Query: 297 SLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 S+GTA T Q+ ++ K RI+LC D D+ G A + + + V Sbjct: 290 SMGTAFTINQINIIKKYKNIKRIILCLDNDNAGNEATISLYEKLTKNNFDIFLVRP-YSK 348 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR------------------SFN 396 + +D D R K K+I + + V+ ++ + F Sbjct: 349 KFKDVDELSRQLPKEECLKIINDQIGFVEYQIEKLKQMNLSYKDKKIELSSIVDMISDFA 408 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ------------QLFQKYITEHS 444 + + + I +L+ + + ++ Sbjct: 409 YNQKFFTEDKKMICDFFEIDVPELQSLLDEKAKKSIKGTGKNFQNNKNKNFIHFSNELKQ 468 Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE 504 + + + + +K + K +E L L ++ + + ++ Sbjct: 469 AIDSAIDNEVGKGSNRENNLFVEIKNPIKEREITKLKEQEKTLFLNMLFSKELAEMYFKY 528 Query: 505 LADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERG-----FGELLK 551 L + + N + + ++ + + ++ K + E+I ++ + Sbjct: 529 LGYLVFINPKNEDAVVYRVHRIVIEILRENLKNKTYDVEDICNQIINSDKLNGTHKDFFN 588 Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQ------GYQQALALY--KRFRLLSRQKEEIEKQI 602 +L+R ++ L +A+ + + + + L R + E+ + ++ Sbjct: 589 GELNRYLKINNLPDIKRDASSIREKDPSFEEKILSEGITLLTELRNHQFKQIIEDKKIEV 648 Query: 603 AQVTAKG 609 ++ G Sbjct: 649 RELKMNG 655 >gi|71893414|ref|YP_278860.1| DNA primase [Mycoplasma hyopneumoniae J] gi|71851541|gb|AAZ44149.1| DNA primase [Mycoplasma hyopneumoniae J] Length = 613 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 127/623 (20%), Positives = 243/623 (39%), Gaps = 57/623 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ I ++ + I +LI + ++ + + CPFH++ PS + K + C Sbjct: 4 QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122 FSC G+ ++F+ L +F+E++Q L + L + K + +R E Sbjct: 60 FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119 Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 A + +L N +L +L RGI IE FK+G+ P + Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + K F E ++ LL N D F+ RL+FPI + G+V+ F GR L Sbjct: 180 KFLIDSKFFDGEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234 Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNS LF K + LYN+ A+ K II+ EG+ DV++ + Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 AG+QN V+ +GT LT+ +L + ++L D D G+ A+ K+ + Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G+DPD + +G A + + D + + N+ +E Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397 Query: 409 KNCINHIKDQKLR--YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-RHRDQKGPSQR 465 + + Q L+ + + I++ + S +N + + + S Sbjct: 398 SPFLEILYHQNLQLAQIFFKKIKEDFGISQDSFKFRPSVQHYNELENTLKENEDQIKSIH 457 Query: 466 LMQSSLVKGKLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + +++ + ++E +L L + + ++ N KL Sbjct: 458 IKKTTNLWLAKPISTEIQELKILSQVLDDILYHDGEKYNRFKGK--QFKFLNPLNNKLME 515 Query: 521 FLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQ 576 + + F + + E+I +L E L+ ++++ + + W A+ +D Sbjct: 516 EI-NIFGYKNPKMREKIKTKLKEVNAELENLIFKDRIEKLINEDLNWKKEKNADDLDNLM 574 Query: 577 GYQQALALYKRFRLLSRQKEEIE 599 Q K + + + + E Sbjct: 575 ELIQKTRGRKDADNIRKLQLDKE 597 >gi|262381510|ref|ZP_06074648.1| DNA primase [Bacteroides sp. 2_1_33B] gi|262296687|gb|EEY84617.1| DNA primase [Bacteroides sp. 2_1_33B] Length = 580 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 122/658 (18%), Positives = 213/658 (32%), Gaps = 99/658 (15%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D + + I + Y+ R D A CPFHDE+ PSF + + Sbjct: 2 ITHDTLLRVRETARIDEVAAGYLTLRRSGK-----DLVALCPFHDERHPSFRISPALNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLI 121 CFSC D + + + GC F E+V+ LA G+ + E + + ++R Sbjct: 57 KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEETERHEARQAILRGN 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E F HSL DE G E Sbjct: 117 EA----FAHSLLPYDPAEGITGEDENG------------------------EEDLRALRE 148 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPET 239 G+ I ++ + RFR RL+FP+R++ GQ+ F GR + KY+NS + Sbjct: 149 AFSHFGVGICPPDAPEGFRRFRRRLVFPVRTTGGQIAGFAGRYRGTEGAGTAKYVNSDNS 208 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++KG+ LY + A+ ++ + ++L EGY DV++ AG+++ G Sbjct: 209 EAYNKGRILYGLYEAVRAVR----------TEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE +R++ +L+ + L D D G A ++ L L G V + L G DP Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLAQGCEVGLLPLPGGMDP 315 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D R G A +L+ + A + I + Sbjct: 316 DEVFRRQGAEALRRLV---RTEAVDYLSHRIREAAGRKGGPDAGGIREVLGEIRLVGSPL 372 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + E S P + + Sbjct: 373 AVYRRMEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVATGLPP 417 Query: 480 PSLREAALLLTLINH---------------PAILQEQYQELADIRYDNNELQKLWSFLFS 524 LRE ALL + + PA + + ++ L + L Sbjct: 418 TRLRERALLRFCLANHDRMFYAGDGSGISLPAWVASELSA-GEMPLTEPAHLDLLALLSG 476 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + L+ L + G E ++ + Sbjct: 477 SGHPDG----------ITDESLSALILSLRSSYPEEG----PPERLPDELLPDEAERQLF 522 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640 + + + ++ T+ E + + +I + +++ +EG Sbjct: 523 LYAEPFIHDRLQRTAARLRSATSTDERATCLGELRDCFALSDRIGRALGSQSVRRVEG 580 >gi|72080401|ref|YP_287459.1| DNA primase [Mycoplasma hyopneumoniae 7448] gi|71913525|gb|AAZ53436.1| DNA primase [Mycoplasma hyopneumoniae 7448] Length = 613 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 130/650 (20%), Positives = 250/650 (38%), Gaps = 70/650 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ I ++ + I +LI + ++ + + CPFH++ PS + K + C Sbjct: 4 QEIITHIIKNTDIYDLISKNINLKPKGR----DSFVGLCPFHEDTNPSLSVSLKKQIFKC 59 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLIRLIE 122 FSC G+ ++F+ L +F+E++Q L + L + K + +R E Sbjct: 60 FSCQKSGNIINFVMLLQNLNFLEALQFLDKEYNLKLKLNYTTKLEKNYSKDELQALRAFE 119 Query: 123 VATDFF-----------HHSLK--NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 A + +L N +L +L RGI IE FK+G+ P + Sbjct: 120 NAVSIYLVELIKIFSLGQQNLIIENPIFFQLFNFLKSRGITREIIEKFKIGFVPTNSILK 179 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + K F +E ++ LL N D F+ RL+FPI + G+V+ F GR L Sbjct: 180 KFLIDSKFFDDEVLMNYSLLTVNGN-----DFFQKRLVFPIENFEGKVVGFSGRCLDDKI 234 Query: 230 -SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLNS LF K + LYN+ A+ K II+ EG+ DV++ + Sbjct: 235 CQPKYLNSSSNSLFSKTEILYNYANAIKQNPK------------EIIITEGFFDVIAFYK 282 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 AG+QN V+ +GT LT+ +L + ++L D D G+ A+ K+ + Sbjct: 283 AGIQNAVALMGTTLTKKHCEML--NNFTVLLALDSDKAGVEASLKSGLI---LGQNRINT 337 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + G+DPD + +G A + + D + + N+ +E Sbjct: 338 YILTGFEGKDPDEYFNTFGSEALVNKLSNRINSFDFAYDFYKNSIKNNSSEEIKIFIEKF 397 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA-----RHRDQKGPS 463 + + Q L+ +Q ++++ F N + D + S Sbjct: 398 SPFLEILYHQNLQ--LAQIFFKKIKEDFGVSQDSFKFRPSVQHYNELENTLKENDDQIKS 455 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-----DIRYDNNELQKL 518 + +++ + ++E +L ++ IL + ++ ++ N KL Sbjct: 456 IHIKKTNNLWLAKPISTEIQELKILSQVL--DDILYDDGEKYNRFKGKQFKFLNPLNNKL 513 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELL--KQLDRQVRDAGLWSATTEANIVDV 574 + + F + + E+I +L E L+ ++++ + + W A+ +D Sbjct: 514 MEEI-NIFGYKSPKMREKIKTKLKEVNAELENLIFKGRIEKLINEDLNWKKEKNADDLDN 572 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 Q K + + Q+ + E + + Sbjct: 573 LMELIQKTRGRKDADNIRKL---------QLDKEMNNEFVDKFFKKIRGL 613 >gi|71894466|ref|YP_278574.1| DNA primase [Mycoplasma synoviae 53] Length = 613 Score = 206 bits (524), Expect = 8e-51, Method: Composition-based stats. Identities = 112/604 (18%), Positives = 230/604 (38%), Gaps = 66/604 (10%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + + + I ++I ++ ++ N Y CPFH++K S N++K Y CF Sbjct: 6 ELKDLINQKLNIVSVISNFISLSKKGNN-----YIGLCPFHEDKNASLTTNETKKIYKCF 60 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRLI 121 SC G + F+ SF+E+++ A +A + ++ ++ T + L+ Sbjct: 61 SCGEAGGIVEFIQKFKKISFMEALKIAATMANIDESEFSFLNKEFKQNFTYDQIKIYDLL 120 Query: 122 EVATDFFHHS-LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + F+ + LK+ + + + F +G+A + ++ E Sbjct: 121 DFTNTFYKTNYLKSELARNYAKE--RKIDSPQIRQRFDIGFADNK--------TKEYLIE 170 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L G + NRL F IR+ G+++AF GR L+ S KY+NS E + Sbjct: 171 NDYQLNELKNAGIINENFNSIINNRLTFGIRNQDGKIVAFSGRDLTNNSSAKYVNSTENL 230 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 +F K LYN+ A + + + + +VEG+MDV++ +AG++NV++ +G Sbjct: 231 VFKKSSILYNYHNAKDEI----------FNKKEVYIVEGFMDVIAFYKAGIENVIAIMGV 280 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 L+ + LL +I L D D G A YK L+ N V+ + + +D D Sbjct: 281 ELSSAHINLLKG--VKINLFLDNDQAGKIATYK---LIKKLANHNNVVSVIKNTYNKDAD 335 Query: 361 SFIRCYGKT-AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC--INHIKD 417 + GK + L + +D + E+ + N + + + + Sbjct: 336 EILLSQGKEVLIKMLNENKVSAIDFAFNSLFEDFNLNKQKDFNNINEFCRKIDDTFGLAP 395 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 ++ Y + I+++L + + S R + +N K + L+ + + Sbjct: 396 PSIKNYLTSLIKEKLNFDY---KFKASFTPRSFSENKPVYKPKINEKNLLIKLKAEKRN- 451 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRY-----DNNELQKLWSFLFSDFVEQKYF 532 LL+ L+++P ++ + + ++ + + Sbjct: 452 --------ELLIMLLSNPDMVNYFFDDSLKWELLTQGTSDDFYSHYEKNISIKDKSKSDQ 503 Query: 533 LPEEIHQRLCERGFGE-----------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + I L ++ + E LL + V + + +D ++ Sbjct: 504 IKAGIVNFLHKKIYSELSKTYLVDEKQLLDLIKNYVDQNWDYWILKDKENIDTINQIRRI 563 Query: 582 LALY 585 L Sbjct: 564 TRLL 567 >gi|150007929|ref|YP_001302672.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|149936353|gb|ABR43050.1| DNA primase [Parabacteroides distasonis ATCC 8503] Length = 580 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 125/653 (19%), Positives = 218/653 (33%), Gaps = 89/653 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 D + + I + Y+ R A CPFHDE+ PSF + + Sbjct: 2 ITHDTLLRVRETARIDEVAAGYLTLRRSGKGL-----VALCPFHDERHPSFRISPALNIG 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRLI 121 CFSC D + + + GC F E+V+ LA G+ + E + + + ++R Sbjct: 57 KCFSCGEAADPIRLVRHMEGCGFEEAVRLLARKYGIEVEEERGTEEAGRHEARQAILRGN 116 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 E F SL DE G + E Sbjct: 117 ED----FARSLLPYDPAEGITGKDENG------------------------EEDRRALRE 148 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG--ESVKYLNSPET 239 G+ I ++ + RFR RL+FP+R++ GQ+ F GR + KY+NS + Sbjct: 149 AFSHFGVGICPPDAPEGFRRFRRRLVFPVRTTGGQIAGFAGRYRGTEGAGTAKYVNSDNS 208 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++KG+ LY + A+ ++ + ++L EGY DV++ AG+++ G Sbjct: 209 EAYNKGRILYGLYEAVRAVR----------TEGDVLLCEGYKDVIAFHAAGIRHAAGLCG 258 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 TALTE +R++ +L+ + L D D G A ++ L L G V + L G DP Sbjct: 259 TALTEDHVRMIRRLTGHVTLALDPDPAGQAATLRSARL---LLAQGCEVGLLPLPGGMDP 315 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D R G A +L+ + A + I + Sbjct: 316 DEMFRRQGAEALRRLV---RTEAVDYLSHRIRKAAGRKGGPDAGGIREVLGEIRLVGSPL 372 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y + + E S P + + Sbjct: 373 AVYQRVEELSKATGIPLDVLREELSAS---------------PGEPVRTGPAEVVTGLPP 417 Query: 480 PSLREAALLLTLI-NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--- 535 LRE ALL + NH + + + I +++ S+ L E Sbjct: 418 ARLRERALLRFCLANHDRMF--YAGDGSGISLP--------AWVASELSAGGMPLTEPAH 467 Query: 536 -EIHQRLCERGF-----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ L G E L L +R + E ++ + Sbjct: 468 LDLLALLSGSGHPDGITDESLSALILSLRSSYPEEGPPERLPDELLPDEAERQLFLYAEP 527 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM--IEG 640 + + + + T+ E + + +I + +++ +EG Sbjct: 528 FIHDRLQRTAAHLRSATSTDERATCLKELRDCFALSDRIGRALGSQSVRRVEG 580 >gi|317177276|dbj|BAJ55065.1| DNA primase [Helicobacter pylori F16] Length = 536 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 103/436 (23%), Positives = 169/436 (38%), Gaps = 34/436 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ L + I ++ +Y+D + + ACCPFHDEK+ SF + K Sbjct: 1 MKIKN--LEPLKERVQIMEVLERYLDLYKVG-----LSFKACCPFHDEKSASFMVSPEKN 53 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V GD L FL SFIE+V+ +A I L K + L + Sbjct: 54 LYHCFGCGVSGDTLKFLQEYKKLSFIEAVEEVAKIYNYALEYESD---AKTEKNNHLKEI 110 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A F +KN K LHY R I IE + LG+ + ++ FS Sbjct: 111 LAYANSLFKERIKNEP-KVLHYLTQTRAISLEMIEAYDLGFCLHGD----LEVLKERFSA 165 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-----RTLSKGESVKYLN 235 + +I GL + R+ P++ S+GQ+ +F R L + KY+N Sbjct: 166 QDLIACGLFSKENQERELKSFCNYRITIPLKDSKGQIRSFSACLCIPRLLKTNQVPKYIN 225 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 T L++K L+N+ AL ++ +I+ EG+ DV++ +N + Sbjct: 226 GRGTSLYNKSFFLFNYNRALESIK----------EKKQVIICEGFFDVIAYEHFNYKNAI 275 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + G A T+ L LL KL+ + FD D G A +A+DL L + I V + Sbjct: 276 CTSGVAFTKEHLALLNKLNVELCFSFDNDRAGTEATIRALDLCLKNHITNMSVIKIKDPS 335 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 +D + + + K+ D + + Sbjct: 336 IKDLSDYQKLNKRPNLSKINR----FKFYCAYLLRAELPTREKDANYKSILKTLEVFEPF 391 Query: 416 KDQKLRYYYSQAIRDR 431 L + + + Sbjct: 392 TQADLIKILNSFLVQK 407 >gi|77415065|ref|ZP_00791126.1| DNA primase [Streptococcus agalactiae 515] gi|77158885|gb|EAO70135.1| DNA primase [Streptococcus agalactiae 515] Length = 218 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 118/224 (52%), Gaps = 8/224 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + Sbjct: 1 MAIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIR 119 F++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ Sbjct: 56 FFHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLD 115 Query: 120 LIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 116 IHRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEF 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 E+ ++ +GL +NS YD F NR++FP+ + G+VIAF G Sbjct: 175 DEKTLMSSGLFNYSENSNQFYDSFNNRIMFPLTNDIGEVIAFSG 218 >gi|153864878|ref|ZP_01997621.1| DNA Primase [Beggiatoa sp. SS] gi|152145627|gb|EDN72379.1| DNA Primase [Beggiatoa sp. SS] Length = 163 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 77/165 (46%), Gaps = 8/165 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI +L+ + I +LI YV + N Y ACCPFH EKTPSF + K F Sbjct: 4 RIPRSFIDELMTRVDIVDLIDSYVSLRKTGRN-----YTACCPFHSEKTPSFTVSPEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRL 120 YYCF C+ G + FL F+E+V LA+ G+ + + E DL + Sbjct: 59 YYCFGCNAHGSAMGFLMEYAHLDFVEAVHELASRVGIEVVYEQGTQTEVSTTDFDDLYPI 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + A ++ L+ ++ YL RG+ F LGYAP Sbjct: 119 MAQAAQYYRQELRQSQAA--IDYLKNRGLTGEIARDFSLGYAPKG 161 >gi|109948092|ref|YP_665320.1| DNA primase DNA G [Helicobacter acinonychis str. Sheeba] gi|109715313|emb|CAK00321.1| DNA primase Dna G [Helicobacter acinonychis str. Sheeba] Length = 523 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 99/440 (22%), Positives = 170/440 (38%), Gaps = 36/440 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M I+ L I I ++ +Y+D + N + A CPFHDE++ SF + K Sbjct: 1 MRITN--IEGLKEQINIVEVLEKYLDLSKAGAN-----FKASCPFHDERSASFMVSREKN 53 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C GD + FL SF E+V+ +A++ L K + L + Sbjct: 54 IYKCFGCDASGDAIRFLQEYKKMSFAEAVEEIASLYHYKLEYAKN---PKTERNERLKAV 110 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A F LKN + + P + + F Sbjct: 111 LAYANTLFKERLKNEERALHYLMHTRALLSPMIEAYDLGYCTPKE-----LEILKNRFEH 165 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-----GESVKYLN 235 E +I +GL + + + S+ + RL P++ S G + +F R+ + KYL+ Sbjct: 166 EDLILSGLFNNKEKNLKSFCNY--RLTIPLKDSHGVIRSFAARSFVFLMPASVNAPKYLH 223 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 ET LF+K LYN++ A II+ EG+ DV++ G N V Sbjct: 224 GRETSLFNKSVFLYNYYRAKP----------FVLQKKQIIICEGFFDVMAYEHFGYLNAV 273 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +LGTAL++ L L KL+ + L FD D GL A +A++L I V + + Sbjct: 274 CTLGTALSKEHLAFLEKLNVELCLSFDNDHAGLEATIRALELCWKMHITTVSVIAIKDAS 333 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN----C 411 +D + + + K+ + + + + + + Sbjct: 334 MKDLGDYQKANQRPCLSKMNGFEFYCAALFRNDLSAQQKDGNYKKILKTLERFEPFMRLF 393 Query: 412 INHIKDQKLRYYYSQAIRDR 431 I ++ LR ++++ Sbjct: 394 CTQILNKVLRQKQIAPVKEK 413 >gi|284931434|gb|ADC31372.1| DNA primase [Mycoplasma gallisepticum str. F] Length = 662 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 150/668 (22%), Positives = 273/668 (40%), Gaps = 69/668 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 L I +S++I +Y+D +++ +N Y + CPFHD+ TPSF ND+K + CFSC+ Sbjct: 12 LRKKISVSSIISKYLDLEKKGSN-----YKSLCPFHDDNTPSFSVNDTKQVWKCFSCNES 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDLIRLIEVAT 125 G + F+ +F+E+V+++ + G+ L + K + ++ + +L + Sbjct: 67 GGVIEFVQKKENLNFVEAVKKIVELEGIDLAAIGYSLNFNKQKAVDESDQEFYKLNQFLA 126 Query: 126 DFFHHSLKNARDKRLHYYLD---ERGIDSHAIEMFKLGYAPDSRY--------SLREHLR 174 H +L+ I+ + F++G+ P S + Sbjct: 127 WRAHSNLRLEFSTNPKLNEFLNKRGLINEELLNNFQIGFHPKSYSLNKLVEDLKVFYQKH 186 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +++II + L S + F NR+IFPI++S GQV+ F GR + + +KYL Sbjct: 187 LNKTYDDQIILSNLRYIKYISEKNVCYFSNRVIFPIKNSDGQVVGFSGRAIDENNEIKYL 246 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+PET F KG NLYN+ ++S I L EGYMDV++L Q G++N Sbjct: 247 NTPETDYFIKGHNLYNYS-----------SLELDENNSTIYLCEGYMDVIALYQIGIKNA 295 Query: 295 VSSLGTALTEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+ +GTALT+ Q+ L+ RIVL D D+ G +A I L+ + Sbjct: 296 VAIMGTALTDQQIELIKAKLNQIKRIVLALDNDESGKKATITCIKLLTRKRVHNLYQLDY 355 Query: 352 LLSRGEDPDSFIR-CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + +D D G+ ++LI + L E ++ + EL Sbjct: 356 SDLKQKDLDEIYHSPDGENQLKELIKKQLSTQKEQENVEYDDEKQLSTQLYQELNELKPE 415 Query: 411 CINHIKDQKLRYYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + L Y I ++L+ Q I Y +K + L + Sbjct: 416 QDDQVDITTLIDYNLDKRITEQLRNFIQAVIKICRYYLISFKYLTYKDLSNVRLKILSKI 475 Query: 470 SLVKGKLSKKPSLREAAL-------------LLTLINHPAILQEQYQELADIRY------ 510 +L K ++ + L L ++ + + D+ + Sbjct: 476 NLYKPTRYLFNTMLQITLTNQVMKSLTTNEQLEAILFCYNFTKRFLEGFTDLIFRKVNDL 535 Query: 511 ------DNNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 N ++++ + F + Y + + I RL F +L +L ++ + Sbjct: 536 YLLNAKQNTLNDRIYNKIKLKLFDDTVYLMKKHIENRLNLDLFHKLKNELLSHIKYSKYA 595 Query: 564 SATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--IS 619 + + N ++ + + F+ L K ++Q+ Q AKGE K A + ++ Sbjct: 596 ALAHDQFVNEEELNAYLKSCTSGIDGFKELYDLKT--KEQLVQWLAKGEIFKLAQIKNLN 653 Query: 620 ILHEVHIQ 627 IL E+ + Sbjct: 654 ILEELLKR 661 >gi|282851792|ref|ZP_06261155.1| putative DNA primase [Lactobacillus gasseri 224-1] gi|282557034|gb|EFB62633.1| putative DNA primase [Lactobacillus gasseri 224-1] Length = 333 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 178/326 (54%), Gaps = 19/326 (5%) Query: 49 KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108 KTPSF ++ K F+ CF C G+ FL +F ESV++ A +A + +P + Sbjct: 7 KTPSFTVSEGKQFFKCFGCGKGGNVFKFLMYQDHLTFPESVKKAAELAHLQMPEGYGEAA 66 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 K + AT+F+ H L + +R Y +R + ++ FK+GYAPD Sbjct: 67 KPLSPLKKMY---RQATEFYQHILLTTKVGERALEYARKRELTDDLLKHFKVGYAPDDDK 123 Query: 168 SLREH-LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 L + ++K +++ + E+GL I+ + +DRFR+RL+FP+ G + F GR +S Sbjct: 124 ILLTYLQQKKEYTDNDLRESGLFIESQDG-QLFDRFRDRLMFPLGDESGYTVGFSGRRIS 182 Query: 227 KGESV-KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 +++ KY+NSPET +F+K K L++F A + S +IL EGYMDV++ Sbjct: 183 NDKTIAKYMNSPETKIFNKSKLLFHFAEAKKAAR----------SEKHLILYEGYMDVIA 232 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 +AG+Q+ V+S+GT+LT Q+ +L +++P I++ +DGD PG+ AA +A L + G Sbjct: 233 AYKAGIQSGVASMGTSLTTEQVYMLRRITPNILVNYDGDPPGIHAAERATKLFG--QVQG 290 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAF 371 + ++L DPD +++ K + Sbjct: 291 FNLGIIVLPENLDPDEYVKNMEKKST 316 >gi|229093363|ref|ZP_04224470.1| DNA primase [Bacillus cereus Rock3-42] gi|228690019|gb|EEL43820.1| DNA primase [Bacillus cereus Rock3-42] Length = 190 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 9/186 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + ++ + I +IG+YV ++ N Y+ CPFH E +PSF + K Sbjct: 4 RIPEEVVEQIRTSSDIVEVIGEYVQLRKQGRN-----YFGLCPFHGENSPSFSVSSDKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD---LI 118 ++CF C G+ SFL + G +F E+VQ+L G+ + ++E I D + Sbjct: 59 FHCFGCGEGGNVFSFLMKMEGLAFTEAVQKLGERNGIAVAEYTSGQGQQEDISDDTVIMQ 118 Query: 119 RLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + E+ ++HH L YL ERGI IE F++GYA + + + L+++ Sbjct: 119 QAHELLKKYYHHLLVNTEEGNEALSYLLERGITKEMIEKFEIGYASPAWDAATKILQKEV 178 Query: 178 FSEEKI 183 + Sbjct: 179 YRCLVW 184 >gi|154492308|ref|ZP_02031934.1| hypothetical protein PARMER_01942 [Parabacteroides merdae ATCC 43184] gi|154087533|gb|EDN86578.1| hypothetical protein PARMER_01942 [Parabacteroides merdae ATCC 43184] Length = 403 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 95/451 (21%), Positives = 172/451 (38%), Gaps = 54/451 (11%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + I++L + I +IG+Y +R + CPFH ++ PS N+ KG + C Sbjct: 3 KQEIQELKASLSIREVIGRYTKLNRVGR-----RWMGLCPFHGDRHPSLSVNEEKGSFVC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVVDPKIEKKEKIQTDLIRLIEV 123 ++C +GD +F+S + F+E+ +L+ +G + + D K + + + Sbjct: 58 YACGERGDVFAFVSKIENVGFVEAANKLSIDSGQLAIEGKDNKEARLLPERLAIKEK--- 114 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 K D ++ + + + L A L G Sbjct: 115 ---------KENSDAEQLPVVNSQLSIENEAFLALLLPAGSGCSELTPTWLDFG------ 159 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--VKYLNSPETIL 241 + + RNRL+FP+R G++ F R LS + KY+NS L Sbjct: 160 ----VGQSPCLVPERWKAMRNRLVFPVRDEEGRLAGFAARRLSDEDRDKPKYVNSETGGL 215 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 + K + LY + A +++ + LVEGY DVL++ AG ++ V+ GTA Sbjct: 216 YRKSELLYGLYEAREAIRR----------EGSVFLVEGYKDVLAMHAAGFRHTVALCGTA 265 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L + LL + + + + D D G +AA + ++ G + L G+DPDS Sbjct: 266 LCTGHIALLKRYTTSVRVMLDADKAGRKAADAIVPVLAGE---GMEAVRIGLPEGDDPDS 322 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R G+ AF + E+ + ++ + + + R Sbjct: 323 LFRRLGREAFAAYVREA-----------VRQTRPSEEQVLLGRIRKGIGLLSGVAEAEKR 371 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 + + D L QL + W+ Sbjct: 372 ERLLRVLEDCLTQLKGLSVGACRPATMDWRW 402 >gi|305432455|ref|ZP_07401617.1| DNA primase [Campylobacter coli JV20] gi|304444494|gb|EFM37145.1| DNA primase [Campylobacter coli JV20] Length = 249 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 75/261 (28%), Positives = 129/261 (49%), Gaps = 13/261 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I++L + I ++I Y++ ++ + + CPFH +K PS H N +KGFY Sbjct: 2 ITKESIENLSQRLNIVDIIENYIEVKKQGS-----SFVCVCPFHADKNPSMHINPTKGFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C GD F+ SF ++V+++A + L ++K + + +L ++ Sbjct: 57 HCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYT----KEKNENKKELRTILP 112 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +F +LK K YL +R ++ I F+LG+A S S+R +K E+ Sbjct: 113 SLNAYFKSNLK--HHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLFHNEKILLEDA 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + L D + Y F R+ FPI + ++ FGGRTL+ + KY+NSP+ ILF Sbjct: 171 MSVGAL--KKDKNNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAKYVNSPQNILF 228 Query: 243 HKGKNLYNFFGALNYLQKSIR 263 K + Y F A + K + Sbjct: 229 DKSRIFYAFNIAKENIAKKKK 249 >gi|294660420|ref|NP_853172.2| DNA primase [Mycoplasma gallisepticum str. R(low)] gi|284812079|gb|AAP56740.2| DNA primase [Mycoplasma gallisepticum str. R(low)] gi|284930654|gb|ADC30593.1| DNA primase [Mycoplasma gallisepticum str. R(high)] Length = 662 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 149/668 (22%), Positives = 274/668 (41%), Gaps = 69/668 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 L I +S++I +Y+D +++ +N Y + CPFHD+ TPSF ND+K + CFSC+ Sbjct: 12 LRKKISVSSIISKYLDLEKKGSN-----YKSLCPFHDDNTPSFSVNDTKQVWKCFSCNES 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD-----PKIEKKEKIQTDLIRLIEVAT 125 G + F+ +F+E+V+++ + G+ L + K + ++ + +L + Sbjct: 67 GGVIEFVQKKENLNFVEAVKKIVELEGIDLAAIGYSLNFNKQKAVDESDQEFYKLNQFLA 126 Query: 126 DFFHHSLKNARDKRLHYYLD---ERGIDSHAIEMFKLGYAPDSRY--------SLREHLR 174 H +L+ I+ + F++G+ P S + Sbjct: 127 WRAHSNLRLEFSTNPKLNEFLNKRGLINEELLNNFQIGFHPKSYSLNKLVEDLKVFYQKH 186 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +++II + L S + F NR+IFPI+++ GQV+ F GR + + +KYL Sbjct: 187 LNKTYDDQIILSNLRYIKYISEKNVCYFSNRVIFPIKNADGQVVGFSGRAIDENNEIKYL 246 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N+PET F KG NLYN+ ++S I L EGYMDV++L Q G++N Sbjct: 247 NTPETDYFIKGHNLYNYS-----------SLEFDENNSTIYLCEGYMDVIALYQIGIKNA 295 Query: 295 VSSLGTALTEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+ +GTALT+ Q+ L+ RIVL D D+ G +A I L+ + Sbjct: 296 VAIMGTALTDQQIELIKAKLNQIKRIVLALDNDESGKKATITCIKLLARKRVHNLYQLDY 355 Query: 352 LLSRGEDPDSFIR-CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + +D D G+ ++LI + L E +++ + EL Sbjct: 356 SDLKQKDLDEIYHSPDGENQLKELIKKQLSTQKEQENVEYDDQKQLSTQLYQELNEIKPE 415 Query: 411 CINHIKDQKLRYYYSQA-IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + L Y I ++L+ Q I Y +K + L + Sbjct: 416 QDDQVDITTLIDYNLDKRITEQLRNFIQAVIKICRYYLISFKYLTYKDLSNVRLKILSKI 475 Query: 470 SLVKGKLSKKPSLREAAL-------------LLTLINHPAILQEQYQELADIRY------ 510 +L K ++ + L L ++ + + D+ + Sbjct: 476 NLYKPTRYLFNTMLQITLTNQVMKSLTTNEQLEAILFCYNFTKRFLEGFTDLIFRKVNDL 535 Query: 511 ------DNNELQKLWSFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 N ++++ + F + Y + + I RL F +L +L ++ + Sbjct: 536 YLLNAKQNTLNDRIYNKIKLKLFDDTVYLMKKHIENRLNLDLFHKLKNELLSHIKYSKYA 595 Query: 564 SATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL--IS 619 + + N ++ + + F+ L K ++Q+ Q AKGE K A + ++ Sbjct: 596 ALAHDQFVNEEELNAYLKSCTSGIDGFKELYDLKT--KEQLVQWLAKGEIFKLAQIKNLN 653 Query: 620 ILHEVHIQ 627 IL E+ + Sbjct: 654 ILEELLKR 661 >gi|307128545|ref|YP_003880575.1| DNA primase [Candidatus Sulcia muelleri CARI] gi|306483007|gb|ADM89877.1| DNA primase [Candidatus Sulcia muelleri CARI] Length = 566 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 117/639 (18%), Positives = 237/639 (37%), Gaps = 91/639 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I+ + + +I ++ + Y A PF++EK PS + K + Sbjct: 2 INKKIIERIFEISKVEEVISDFICLKKIG-------YKALSPFYNEKHPSLIVSPLKQIW 54 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 FS G+ ++FL +F+ES++ LA + + + L + Sbjct: 55 KDFSSGKGGNVVNFLMEYEKFNFLESIKYLAKKYNIEI---------INSYKESLFIINN 105 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A FF L ++ L +R + + + F +GYAP ++++ Sbjct: 106 YAKFFFKKELNLNKNS-----LFKRQFNLNQLNKFDIGYAPYNKFTNS------------ 148 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ G + + + NR+IFPI S G ++ FG + ++PE+ ++ Sbjct: 149 ALKKGFKLKLLKKSGLINNNPNRIIFPIHSISGLILGFG-------VGGRSFSTPESEIY 201 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 HKG NLY + A Y+ K +F L EGY DV+S+ Q G++NVV+SLGT+L Sbjct: 202 HKGNNLYGIYQAKKYILKY----------NFCYLTEGYTDVISMYQFGIKNVVASLGTSL 251 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 T Q+ L+ + + + + +D D+ G+ + ID+ L + + L EDPDSF Sbjct: 252 TLNQIFLIKRFTKNLTIIYDSDESGINYCLRLIDI---LLEQDINLKIISLPFKEDPDSF 308 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + + + + ++ + N ++ I D +R Sbjct: 309 FKKKNYNKIINYLKINT-------FNFINFKLNFFKKKKFLFIKDIINSLSKISDLIIRD 361 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + L ++E K L + K + Sbjct: 362 IYLKYFCILLNINEYIILSEIEYLLLNKFKQKSFHF-----------ILNEYKKFNTLIV 410 Query: 483 REAALLLTLINHPAIL-----------QEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 E LL + + ++ ++ + + R+ N ++ + +V Sbjct: 411 LEEKLLQISLLYGNVIITSNNYIPLKGNKKITIIEEFRFQMNIYNLVFYLEKNKYVFNVI 470 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P+ + ++ + +L+ +D+ +I + Q + + L L + + Sbjct: 471 NKPKFVFNKIFYKDIIKLISLIDQY------EFDFFNLDIKKISQYFIETL-LRYKSYYI 523 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 S + + + K I+ L + I++ Sbjct: 524 SNIIKNKFSILNR-EKKFHQNFLLKTIN-LTNIKNNINK 560 >gi|254497835|ref|ZP_05110601.1| DNA primase DnaG [Legionella drancourtii LLAP12] gi|254352913|gb|EET11682.1| DNA primase DnaG [Legionella drancourtii LLAP12] Length = 503 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 121/543 (22%), Positives = 223/543 (41%), Gaps = 47/543 (8%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137 L FI++++ LA G+ +P +K DL +L+ + ++ LK+ Sbjct: 1 MNYLNQGFIDAIETLATRLGLTVPRD--GQAEKNNASQDLYKLLSAISLYYQKQLKHE-G 57 Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 + YL RG+ ++++LGYA + ++L + ++ +I G+LI D Sbjct: 58 QLAINYLRGRGLSGDIAKLYQLGYANEGWHNL---EKAFPRNQRDLITTGMLIKNDEG-K 113 Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257 YDR+RNR++FPI G++I FGGR LS + KYLNSPET++F K + LY Sbjct: 114 IYDRYRNRVMFPIHDRHGRIIGFGGRVLSADQKPKYLNSPETVIFQKSRELYGLHQ---- 169 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317 ++ S +II+VEGYMDV++L Q G+ N V++LGTA + Y ++LL K + + Sbjct: 170 ------ILSQKKSPEYIIIVEGYMDVIALAQHGIMNAVATLGTATSTYHIQLLAKHTKAL 223 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 CFDGD+ G +AA++ ++ L L G +F+ L G DPDS +R GK F + + Sbjct: 224 FFCFDGDNAGRQAAWRGLESSLPQLHQGLDASFMFLPDGHDPDSLVRAEGKENFLNRLKQ 283 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 + PL ++ + P + +L K + I + + + Sbjct: 284 ATPLHRFFLDTLAKDINLRNPAGKTQLINVTKPLLQKINEGSYKQLLIDDLARMTHIESH 343 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + S K R + L+ +P I Sbjct: 344 RLNQLISDQQVTQAPAVTQEKPKTALTRTPM----------------RIAVALLLQNPEI 387 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + +++ + E + + L + + + + E + +L Sbjct: 388 YTKSIEQIDLNALNTKEHE-ILLKLLQQLAANPKTNTASLIETWRDHHYFEFINRLAAW- 445 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIEKQ--IAQVTAKGEAEK 613 + ++ + + + ++ L+ RQ + +Q + + + Sbjct: 446 --------NHQVPEQELVKEFIDIIIFLQKQNQELIIRQLIDKSRQQGLTETERLHLQKM 497 Query: 614 TAI 616 Sbjct: 498 LQE 500 >gi|329121140|ref|ZP_08249771.1| DNA primase [Dialister micraerophilus DSM 19965] gi|327471302|gb|EGF16756.1| DNA primase [Dialister micraerophilus DSM 19965] Length = 525 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 128/558 (22%), Positives = 246/558 (44%), Gaps = 39/558 (6%) Query: 77 LSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133 L + +F E++++LA IA + +P + +KK ++ + + E+A+ +F++ L K Sbjct: 2 LKKMDNITFPEAIEKLAEIARIEIPEKEMTYEEKKKAELSKQIYDVTELASIYFYNCLTK 61 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 K + Y +R + I+ FKLG+AP + L K +I++ + G Sbjct: 62 TDIGKEGYEYFLKRHLSDEIIKKFKLGFAPPEWHRLYSDFTSKKKISPEILQIA-GLVGY 120 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFG 253 + YD FRNR +FPI + +G+ +AFGGR + KYLNSPE+++F+K + L+ + Sbjct: 121 KNGKHYDIFRNRCMFPILNLKGKTVAFGGRVM-DDSLPKYLNSPESVIFNKRRLLFALYQ 179 Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313 AL ++ I+VEGYMD +SL G+ NVV+SLGTA T Q RLL + Sbjct: 180 ALPEIR----------EKRQAIMVEGYMDAISLHAHGITNVVASLGTAFTIEQARLLKRY 229 Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 + ++ +D D G A +A+++ G ++ V L G+DPD FI +G+ A+ + Sbjct: 230 ADELIFNYDMDAAGQNATKRALEIAG---NVGLKLRVVRLGDGKDPDEFINAHGREAYLE 286 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + ++ P D L+ + NT + + ++ + + + + + + R+Q Sbjct: 287 SVAQAQPATDYLFSAALKRYDSNTLEGQQKILADMFDVLLAKGNSFYFNSFIVKMARRMQ 346 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 +E Y R KKN+ + S+++ K+ L E + Sbjct: 347 MDEGLIRSEALRYAR--KKNSNVFISQKQSEKIKSEDYETKYNMKRQKLLEEGFFRYCLF 404 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + E ++ L + ++ ++L+ + E E ++L R + L +L Sbjct: 405 NNKL-PEGWELLKKYEFADDFHKELFR-ILEKLSETNITEKET--EKLLPREYVPRLAEL 460 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 G + L R+ +++A++ + + +K Sbjct: 461 LMNSNSVGNLPMEEYIRP--------------LKKVYLQREYRVHTQRVAEL-LETDPQK 505 Query: 614 TAILISILHEVHIQIHQI 631 I ++ +I + Sbjct: 506 AREEQLICIKLSEEIRNL 523 >gi|255521270|ref|ZP_05388507.1| DNA primase [Listeria monocytogenes FSL J1-175] Length = 143 Score = 202 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVV--DPKIEKKEKIQT 115 ++CF C G+ SFL G +F+ESV+++A ++ + LP + K+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLTFVESVKKVADMSHLDVAIELPEERDTSNLPKETSETA 117 Query: 116 DLIRLIEVATDFFHHSLKNA 135 ++ + ++ +H+ L Sbjct: 118 KMVEMHQLTAKLYHYILMET 137 >gi|284101718|ref|ZP_06386019.1| DNA primase [Candidatus Poribacteria sp. WGA-A3] gi|283830346|gb|EFC34575.1| DNA primase [Candidatus Poribacteria sp. WGA-A3] Length = 364 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 182/373 (48%), Gaps = 22/373 (5%) Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK--IEKKEKIQTDLIRLIEVATDF 127 GD +FL G F+E+V+ LA AG+PLP + + + L L +A + Sbjct: 2 GGDIFTFLMRKEGLEFLETVKDLAERAGIPLPRNASQGLTPSQTGQRKRLEGLHALADTW 61 Query: 128 FHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 F +L + + + YL RG++ ++ F +GYAP S L HL ++G + + + Sbjct: 62 FQQNLHDPSKGRPALAYLTGRGLELETLKEFGMGYAPPSWDGLTNHLTRQGATPSDLEAS 121 Query: 187 GLLIDGD-----NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 GL+ D A YDRFR R++ PI R VIAFGGR +G + KYLNSP+T L Sbjct: 122 GLVAVKDAQGRSKPARFYDRFRGRVMLPIHDLRANVIAFGGRVFEEG-TPKYLNSPDTAL 180 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F KG+ LY A ++LVEGY DVL++ QAG++ V + LGTA Sbjct: 181 FQKGRVLYALHKARE----------TNPHLDSLMLVEGYFDVLAMHQAGIRQVAAPLGTA 230 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LT LL + + +VL FDGD G A +A+D+ G V V++ G DPDS Sbjct: 231 LTPEHAVLLRRFANTVVLIFDGDAAGTGAVLRALDV---FRDSGVTVKVVVMPPGHDPDS 287 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 ++R +G F L +L L++ + E + T +ER + + + + + Sbjct: 288 YVRAHGAERFLALRDRALTLLEFAVAQRLEGATHATIEERTRRVDDILGILAKVSNPIEK 347 Query: 422 YYYSQAIRDRLQQ 434 Q + +RL Sbjct: 348 NEQVQRVAERLGV 360 >gi|321310209|ref|YP_004192538.1| DNA primase [Mycoplasma haemofelis str. Langford 1] gi|319802053|emb|CBY92699.1| DNA primase [Mycoplasma haemofelis str. Langford 1] Length = 611 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 133/620 (21%), Positives = 243/620 (39%), Gaps = 55/620 (8%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 I +I Y+ +R N YW+ CPFH + +PS + K + CFSC V GD ++ Sbjct: 10 SILKVIQNYIKTSQRGAN-----YWSICPFHQDSSPSLSISPEKNIFKCFSCGVSGDAIA 64 Query: 76 FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F+ + C++++S+ +++ I G+ + + KE + L ++ EV +H L N Sbjct: 65 FVMKIEKCNYVQSIYKISEILGLD---PNQYLTAKESSNSKLFKINEVVALAYHKFLFNK 121 Query: 136 RDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLI 190 ++ Y +ERG+ I+ ++LGYAP+ + S L I Sbjct: 122 VNQHHLEYLTNERGLSKEIIQKYQLGYAPEEDILKDVFRSYLSANEKESFGDEEYEKLGI 181 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 S F++R+IFPI + GQ++ F GR + K KYLN+ +F+K +YN Sbjct: 182 FNYGRGASDPFFKDRIIFPIYNRHGQIMGFSGRAI-KNVEPKYLNTKSNSIFNKKYCIYN 240 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 S + L EG+ DVLS QAG++N V+ +G++L L ++ Sbjct: 241 I--------------QNLQEGSPVYLYEGFFDVLSSEQAGIKNGVAVMGSSLDSSILDVI 286 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGK 368 S +IV CFD D G K + ++ G V + L +D D +++ Sbjct: 287 KNYSKKIVCCFDNDSTGRNFTIKVFEN---LVLNGFSVYVLDLLDTKSKDIDEYLKESSS 343 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH------IKDQKLRY 422 + ++L S + N + +E L +K R Sbjct: 344 DSSKRLKEPSHFFEWYRKLYIQDKDISNPLVLQPLIEESLGFLFVSNTSSPVMKGGVDRE 403 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y ++ ++ F K ++ S N +++ K + +L + +KP Sbjct: 404 YALDSL--KIIFDFYKLSSDFSDEKHAPIINRKYQSYKQAVTASLIRTLPTRHIPQKPRS 461 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L L + I + + N ++ S E K FL + Sbjct: 462 VDKFHL-LLTKYSKIFKYIENHGESLGDANEWFFEIPEEYVSASREAKLFLSLLKKKLFG 520 Query: 543 ERGFGELLKQLDRQVRDAG-----------LWSATTEANIVDVRQGYQQALALYKRFRLL 591 E + L + + + + E + ++R +++ L + R + Sbjct: 521 GEESQEEIDNLANLIPEKDKDIPSIEEFFNCYFSLNEGIMEEIRNMWKKNELLDVKERWI 580 Query: 592 SRQKEEIEKQIAQVTAKGEA 611 + E++K I K + Sbjct: 581 KTE--ELKKLILDNQQKSSS 598 >gi|47459126|ref|YP_015988.1| DNA primase [Mycoplasma mobile 163K] gi|47458455|gb|AAT27777.1| DNA primase [Mycoplasma mobile 163K] Length = 614 Score = 200 bits (509), Expect = 5e-49, Method: Composition-based stats. Identities = 116/575 (20%), Positives = 236/575 (41%), Gaps = 55/575 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +LL + I +I ++ ++ N Y A CPFH++ PS + K + C Sbjct: 4 KNIFDELLSQVDIVTVINNHLSLIKKGKN-----YIAICPFHEDSKPSLTVSVEKQVFKC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK--EKIQTDLIRLIE 122 F+C+V G+ +SF+ L SF+E+ + +A G+ L + K ++ K Q +I Sbjct: 59 FACNVGGNAISFVEKFLKISFLEASKMIAQENGINLEFSEKKQQRVILTKTQEQIIEANN 118 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 +A F+ +++ + ++K L +L+ R I+ + F S +L+E + +K + + Sbjct: 119 LALSFYKYNIFDKQNKSLVSFLNSRNINDANLIDF-FELGFASNENLKEKIMKKDSTINE 177 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETIL 241 I + + + ++ NR+IFPI+ ++ F GR + + KYLN+ E + Sbjct: 178 AILSVASLINSKNGNFFE---NRMIFPIKDENDFLVGFSGREIVPNSNNVKYLNTSENAI 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+KG LYNF A ++ +I+ EG+MDV++L + G++NV + +GT+ Sbjct: 235 FNKGNVLYNFNKAKEFI----------TYKKELIICEGFMDVIALYKIGIKNVTALMGTS 284 Query: 302 LTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 + ++L + +IV DGD G A K+I + + + DPD Sbjct: 285 FSNNHIKLFNNIKDIKIVFFLDGDLAGKNATIKSI---NKIIKYKFEIEIINNPLKMDPD 341 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN------- 413 + G++ E+++ + + L E S N ++ + + Sbjct: 342 EILNRLGQSRLEEIVKSRKNVFEFLLDYFLEINSLNNSEKIIDFCKIYSQYLQHAKQDIK 401 Query: 414 -----------HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 I + + Y++ + Q + + + Y K+N + + Sbjct: 402 IIILDKIKKTEKIPQELIDKYFAFKTNNLENQDYNVLDFDQNYKNTYQKENKYKANYQNN 461 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINH-----PAILQEQYQELADIRYDNNELQK 517 + + S E +L ++ ++ + D N L + Sbjct: 462 FWNINDFKFWQLNQS------EKVILSLFDSYRKDPKKELIVLFSIKKNDFVLKNLALNE 515 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + L + +++ E+ + LLKQ Sbjct: 516 IAEKLVTSLDKKEVIKASELFDSKEKEFIDNLLKQ 550 >gi|185179022|ref|ZP_02964771.1| DNA primase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024056|ref|ZP_02996807.1| DNA primase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518324|ref|ZP_03003838.1| DNA primase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195867979|ref|ZP_03079976.1| DNA primase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225550988|ref|ZP_03771934.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|184209113|gb|EDU06156.1| DNA primase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019092|gb|EDU57132.1| DNA primase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998041|gb|EDU67138.1| DNA primase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660375|gb|EDX53635.1| DNA primase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|225378803|gb|EEH01168.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 648 Score = 200 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 127/641 (19%), Positives = 252/641 (39%), Gaps = 55/641 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + + ISN+I Y+ ++ N YWA CPFH++ S +D K Sbjct: 3 KITNNVFQAIRDAVNISNVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSISDKKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119 + CFSC+ GD + F++ ++ + Q + + L +++ KI +E + L Sbjct: 58 FKCFSCNHAGDVIKFVADYKKIPYVLAAQEIIRTMNLDLKLLNHLQKISPEETKKNKLFD 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-------RYSLREH 172 L + +F + L N +K + YL +R ++ +E FK+GYAP + + + Sbjct: 118 LNKQIQKWFINFLNNKNNKHVLDYLVKRNLNQSDLEYFKIGYAPGNDQLLNLIKSNYDNL 177 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 +++ E + + D +D F +R+IF I ++ F GR ++ ++ K Sbjct: 178 VQENDEFELNKLINNSFLVIDKKGDYHDFFNDRIIFSIYDHLNNIVGFSGRIINNEKTPK 237 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLN+ T++F K + LYNF + + + + +VEG+MD ++ ++ Sbjct: 238 YLNTKTTLVFKKDEILYNFN-----------NVITLDDNHQLFIVEGFMDAITTHKSNKP 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 NVV+++G L+ L + + ++LCFD D G A K + L L +L V Sbjct: 287 NVVATMGVELSNKHLETIANYGIKDLILCFDNDHAGFLATKKQV-LKLANLAFNIFVVDH 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + +D D + YG A KL+ + L + + L T +TP + + Sbjct: 346 KNNDCKDIDEYANKYGYDATNKLLEQQLHISEFLLLDITNTN-KSTPSLKHSYKQDCFEI 404 Query: 412 INHIKDQKLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKN------ARHRD 458 I D Y I L+++ ++ + + K+N + Sbjct: 405 IQKYGDIFYIDKYVDFINQTLQMDEVLLKKIIEELLIKKQSKPIQNKENEYSYVYQDKKY 464 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 K Q QS K K + L++ L+ + L ++ + N L + Sbjct: 465 HKTKKQITQQSFNNKKLPLTKINKHFNHLVIILLMNRKFLNRFDSQIRNKFSRNQNL--I 522 Query: 519 WSFLFSDFVEQKYF-----LPEEIHQRLCE--RGFGELLKQLDRQV-----RDAGLWSAT 566 + + ++ E + + + + E++ Q + + Sbjct: 523 VNIIEDFYLYNFEVNAILKDSEIFIEFINKNYAKYDEIINQFTKIIQVVKYNPKLDNLIA 582 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E + + + + L+ + ++QIA Sbjct: 583 FELAKNSFLYEWYKNEIKHLKLTNLNLDINDNQEQIANNEK 623 >gi|171920681|ref|ZP_02931906.1| DNA primase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188524321|ref|ZP_03004358.1| DNA primase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273289|ref|ZP_03205825.1| DNA primase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554496|ref|YP_002284941.1| DNA primase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550583|ref|ZP_03771532.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|171903417|gb|EDT49706.1| DNA primase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195660149|gb|EDX53529.1| DNA primase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249809|gb|EDY74589.1| DNA primase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541997|gb|ACI60226.1| DNA primase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379737|gb|EEH02099.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 648 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 127/641 (19%), Positives = 251/641 (39%), Gaps = 55/641 (8%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + + + ISN+I Y+ ++ N YWA CPFH++ S +D K Sbjct: 3 KITNNVFQAIRDAVNISNVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSISDKKQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIR 119 + CFSC+ GD + F++ ++ + Q + + L +++ KI +E + L Sbjct: 58 FKCFSCNHAGDVIKFVADYKKIPYVLAAQEIIRTMNLDLKLLNHLQKISPEETKKNKLFD 117 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-------RYSLREH 172 L + +F + L N +K + YL +R ++ +E FK+GYAP + + + Sbjct: 118 LNKQIQKWFINFLNNKNNKHVLDYLVKRNLNQSDLEYFKIGYAPGNDQLLNLIKSNYDNL 177 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 +++ E + + D +D F +R+IF I ++ F GR ++ ++ K Sbjct: 178 VQENDEFELNKLINNSFLVIDKKGDYHDFFNDRIIFSIYDHLNNIVGFSGRIINNEKTPK 237 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLN+ T++F K + LYNF + + + + +VEG+MD ++ ++ Sbjct: 238 YLNTKTTLVFKKDEILYNFN-----------NVITLDDNHQLFIVEGFMDAITTHKSNKP 286 Query: 293 NVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 NVV+++G L+ L + + ++LCFD D G A K + L L +L V Sbjct: 287 NVVATMGVELSNKHLETIANYGIKDLILCFDNDHAGFLATKKQV-LKLANLAFNIFVVDH 345 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + +D D + YG A KL+ + L + + L T +TP + + Sbjct: 346 KNNDCKDIDEYANKYGYDATNKLLEQQLHISEFLLLDITNTN-KSTPSLKHSYKQDCFEI 404 Query: 412 INHIKDQKLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKN------ARHRD 458 I D Y I L+++ ++ + + K+N + Sbjct: 405 IQKYGDIFYIDKYVDFINQTLQMDEVLLKKIIEELLIKKQSKPIQNKENEYSYVYQDKKY 464 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 K Q QS K K + L++ L+ + L ++ + N L + Sbjct: 465 HKTKKQITQQSFNNKKLPLTKINKHFNHLVIILLMNRKFLNRFDSQIRNKFSRNQNL--I 522 Query: 519 WSFLFSDFVEQKYF-----LPEEIHQRLCE--RGFGELLKQLDRQV-----RDAGLWSAT 566 + + ++ E + + + + E++ Q + + Sbjct: 523 VNIIEDFYLYNFEVNAILKDSEIFIEFINKNYAKYDEIINQFTKIIQVVKYNPKLDNLIA 582 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E + + + L+ + ++QIA Sbjct: 583 FELAKNSFLYEWYNNEIKHLKLTNLNLDINDNQEQIANNEK 623 >gi|149003981|ref|ZP_01828789.1| DNA primase [Streptococcus pneumoniae SP14-BS69] gi|147758040|gb|EDK65046.1| DNA primase [Streptococcus pneumoniae SP14-BS69] Length = 169 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 6/155 (3%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG + + N Y CPFH EKTPSF+ + K FY+ Sbjct: 3 DKQVIEEIKNNANIVEVIGDVISLQKAGRN-----YLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ G +F+E+VQ L G+ + +K L + E Sbjct: 58 CFGCGRSGDVFKFIEEYQGVTFMEAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHED 117 Query: 124 ATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMF 157 A F+H L + YL +RG+ ++ F Sbjct: 118 AAKFYHAILMTTTMGEEARNYLYQRGLTDEVLKHF 152 >gi|330938477|gb|EGH42080.1| DNA primase [Pseudomonas syringae pv. pisi str. 1704B] Length = 122 Score = 197 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 7/121 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P+ FI DLL I +++ V + N Y ACCPFH EKTPSF + K FY Sbjct: 5 IPQSFIDDLLNRTDIVDVVSSRVQLKKAGKN-----YTACCPFHKEKTPSFSVSPDKQFY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 YCF C G+ L F+ F ++V+ LA AG+ +P + ++ + L L Sbjct: 60 YCFGCGAGGNALGFIMDHDNLDFPQAVEDLAKAAGMEVPREQSVKGQKPRQPTDSPLYPL 119 Query: 121 I 121 + Sbjct: 120 L 120 >gi|254729571|ref|YP_003084253.1| DNA primase [Cyanophage PSS2] gi|254211723|gb|ACT65671.1| DNA primase [Cyanophage PSS2] gi|265524919|gb|ACY75811.1| predicted protein [Cyanophage PSS2] Length = 524 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 108/529 (20%), Positives = 192/529 (36%), Gaps = 104/529 (19%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M I + I + Q R ++ A CP+HD+K PS + S Sbjct: 1 MRLSNTTIDAVRERASIVDQFNQ-AKLKRTGR-----EFVAQCPWHDDKRPSLTISPSTN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK----EKIQTD 116 YCF C D + +L G SF +SV RLA G+ + + ++K + + Sbjct: 55 RAYCFVCARGVDSIGWLQDREGLSFSDSVVRLAERYGIQVEADSAEDQEKWRAEQAERQL 114 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + E F L + + RG+ I +++G+ Sbjct: 115 IFSQREKQRTQFVEMLAGSPGEEYL---KGRGLTDETIAEWRIGWNGS------------ 159 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 R++FP+ ++G+ IAF GR L KY NS Sbjct: 160 ----------------------------RVMFPLDDAQGRTIAFTGRVL-DDTKPKYKNS 190 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 L+ K + ++ A N + K+ R +++ EG MDV+S Q GV+N+V+ Sbjct: 191 QNDALYQKAELVFGLSRARNEITKTTR----------VVICEGQMDVISCWQEGVRNMVA 240 Query: 297 SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-NRVNFVLL 353 G++LT+ + + + IVLCFDGD G++AA +A+ + + G + + L Sbjct: 241 VSGSSLTQEMIDRIIKQTHAKEIVLCFDGDLGGMKAADRALRSLQELALTGDITLKILTL 300 Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 G DP A +LI ++ V + RE N P + E +K + Sbjct: 301 PEGCDPADLA-----DAMPELIADAPHWVQWWFDREVGQIDLNDPRQIVAAEAGVKRILR 355 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + LR + + ++ L+ + + +++ Sbjct: 356 VLPTGALREFVRRRAKEVLKAI----------------------------PDVKPATVRT 387 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 K E L ++ L+D+ Y + + + W + Sbjct: 388 RKEIDACLWAERRALRLYLHDAGSRP----ALSDLNYKDPLMDQAWKLI 432 >gi|331027982|ref|YP_004421532.1| DNA primase [Synechococcus phage S-CBS2] gi|294805595|gb|ADF42434.1| DNA primase [Synechococcus phage S-CBS2] Length = 534 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 116/534 (21%), Positives = 199/534 (37%), Gaps = 74/534 (13%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M ++ + P+S L+ R ++ C +HD+K PS ND K Sbjct: 1 MAVSPATLRAIKA-APLSALVEATGAQLKRVG-----HEFLTQCLWHDDKNPSLTINDDK 54 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE---KKEKIQTD 116 GF +C C GD + +L G S+ E+ + A I GV D E ++ + Sbjct: 55 GFCFCHVCRGGGDAIDYLGQRRGLSWREAAEAAADILGVRFETDDEDPEVTARRNAERKA 114 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I ++E D + +L+ + R+ L RG+ + A F +G+A Sbjct: 115 AIAILEAEQDAYKANLRAPQAGRIRDLLRARGLTAEAAREFGIGFAAQG----------- 163 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 F R+ PI + R +++ + GR + ++ KY N+ Sbjct: 164 ------------------------FFAGRITLPIYNHRNELVGWTGRATKEDQTAKYKNT 199 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 LF K +YN A + + II VEG++DV+S+ QAG++NVV+ Sbjct: 200 ESNDLFDKKTLIYNEVRAKEAAR----------EAGSIIFVEGHLDVVSMWQAGIRNVVA 249 Query: 297 SLGT-ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV-NFVLLS 354 GT A L+ L + I+LC+DGD G +A + I + + G + L Sbjct: 250 MQGTGAPDPLLLQRLTRNIKNIILCYDGDAGGRKATEQFIKVAGPMALEGKVNLSVATLP 309 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 G DPD IR G + + +D + + E+E L+ I+ Sbjct: 310 EGSDPDEVIRSGG--DLYNYLANADSWLDWVIDTWASALDKSDTAMVTEVEQKLRALIDG 367 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 ++ + LR +Y L E + W + + R Q + + Sbjct: 368 LRSKALRTHYIDKAARVLTATE----KEAEKLAKEWGNREFFSSEAEWTPRTPQEARLA- 422 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 E LL ++ A+ + L + + L+ L + L Sbjct: 423 --------AERRLLRLFVHRAALRNQLLPLLERV--YHPALRWLSARLVELQEN 466 >gi|7546338|pdb|1D0Q|A Chain A, Structure Of The Zinc-Binding Domain Of Bacillus Stearothermophilus Dna Primase gi|7546339|pdb|1D0Q|B Chain B, Structure Of The Zinc-Binding Domain Of Bacillus Stearothermophilus Dna Primase Length = 103 Score = 195 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 39/103 (37%), Positives = 58/103 (56%), Gaps = 5/103 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I+ + + I ++IG+YV R+ N Y+ CPFH EKTPSF + K Sbjct: 4 RIPEETIEAIRRGVDIVDVIGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQI 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104 ++CF C G+ +FL + G F+E+ +RLAA AGV L V + Sbjct: 59 FHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 101 >gi|240047244|ref|YP_002960632.1| DNA primase [Mycoplasma conjunctivae HRC/581] gi|239984816|emb|CAT04803.1| DNA primase [Mycoplasma conjunctivae] Length = 590 Score = 194 bits (493), Expect = 3e-47, Method: Composition-based stats. Identities = 129/631 (20%), Positives = 247/631 (39%), Gaps = 63/631 (9%) Query: 8 IKDLLI----HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I++L +I I ++I QY++ ++ N Y CPFHD+ PS + ++ + Sbjct: 3 IQELRAYIQNNIDIHSVISQYINLSKKGNN-----YLGICPFHDDSKPSLSVSTNRKIFK 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLI 121 CF+C+ GD + FL SF E + L + L + + +++ + + Sbjct: 58 CFACNQAGDVIQFLIKYHNWSFNEVINFLNTTYNLQLNTNLVLKETQIYTEVEKQALSAL 117 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 A+ + L + +D+++ YL +R I I+ F +G+AP ++ Sbjct: 118 SNASKIYFLYLYHNKDEKIKKYLQKRRISEDIIQTFNIGFAPAE-------GIKEKLYNL 170 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 + L+ + D F NRL F I + +G ++AF GR+L + E+ KYLNS + L Sbjct: 171 GFEHSLLVNYSLINNLDNDFFTNRLTFAISNEKGDIVAFSGRSL-ENENPKYLNSASSSL 229 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F K LYN+ A + II+ EG+MD ++ + G+ NVV+ +GT+ Sbjct: 230 FSKSNILYNYHRAKE----------FEGPNKEIIITEGFMDTIAFYRDGIHNVVALMGTS 279 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 LTE + LL ++ L D DD G A K+I + L + DPD Sbjct: 280 LTENHINLLKN--KQVTLVLDVDDAGNNATLKSIQI---LLKNKITTFVISWEDKMDPDE 334 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + YGK + +K I +D ++ ++ + N+ ++K + R Sbjct: 335 YFEKYGKQSLQKAIRNKKSALDFVYNFFLKSINKNSSQHLENFVKNIKWYLEK-SSLAAR 393 Query: 422 YYYSQAIRDRLQQ-----------LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 + + I L L Q + + +H + R ++S Sbjct: 394 EIFLKKIETDLNIPSSAFQFKDDYLKQNFFNSDDYNFDPGYELEKHYYIPPSNHRKVESK 453 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 P E +LL ++ + + +D ++ + + + + + +Q Sbjct: 454 GSFNFPPVTPLFFELKILLVVLLDQKFINVLKR--SDYKFIDAKNKNYFESI-EKIHQQP 510 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + I +LLK + ++ D T + L K+ Sbjct: 511 EAHAKMIMDT-----REQLLKMIGKEFYDYWNLDITPVTLEE--FADWIDYANLNKKNH- 562 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 +I +I ++ + ++ L+ + Sbjct: 563 ------DINNKIKRINETTDPKEQEELLLKI 587 >gi|298713213|emb|CBJ33512.1| DNA primase [Ectocarpus siliculosus] Length = 1265 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 69/257 (26%), Positives = 109/257 (42%), Gaps = 28/257 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + + + I+ +IGQ+V+ CCPFH+++TPSF +DS+G Y Sbjct: 183 ITDETLDLIRASTSITEVIGQHVEMKPAGRG-----MVGCCPFHEDRTPSFSVDDSRGSY 237 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV------------DPKIEKK 110 +CF C GD ++FL + G F E V LA AG+PL + + Sbjct: 238 HCFGCGASGDVITFLMQIDGLGFREVVHDLAVEAGIPLGFENAADGSGGGKWDTADEKAR 297 Query: 111 EKIQTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + L ++++A F+ L + ++ ERGI + F+LGY+P S Sbjct: 298 REARERLSLVLQMAAQFYTRCLVEMPAAGGARAHIIERGISPMTVMDFQLGYSPADLTSP 357 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYD----------RFRNRLIFPIRSSRGQVIA 219 + E + L+ + RFR RL+ PIR RG VI Sbjct: 358 LIEYLDQEGFEMDTLVDAGLVPDTSKWKYRPSPNDARGRVDRFRGRLVVPIRDHRGLVIG 417 Query: 220 FGGRTLSKGESVKYLNS 236 FG R LS ++ + S Sbjct: 418 FGARDLSDSQAQGSVGS 434 Score = 80.7 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 64/279 (22%), Positives = 105/279 (37%), Gaps = 29/279 (10%) Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 KYLNSPET LF KGKN++ A ++ S +VEGY DV+ L A Sbjct: 492 PAKYLNSPETTLFKKGKNVFGLDLAKEAMR----------SEDTAFVVEGYFDVIKLHDA 541 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDL-----VLCHL 342 G++ V LGTA+T QL+L + + R++LC DGD G RA + + + Sbjct: 542 GIRCAVGVLGTAITIDQLQLCARYTKSKRVILCMDGDAAGRRAVERLCESPASSGLDSLS 601 Query: 343 IPGNRVNFVLLSR---GEDPDSFIRCYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTP 398 G V+ + +DP F++ +G F K++ +++P D + F Sbjct: 602 EAGVSVSVATIPEDPGCKDPADFLQAHGAEEFRAKVMGKAVPWSDWYGDSILADHDFAGD 661 Query: 399 DE-RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE-------HSGYGRYW 450 L ++ + + ++ L + + S R Sbjct: 662 ANAFRRCTDRLTGFMSDLSIPTDQTFHVHRFAKALAGGNEAMRHQLEFDLMNMSNEKRAR 721 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 K R R + ++ RE + L Sbjct: 722 KNALRRRSGHYTGSWNAGVNAGSAPPAQGMKKREESRLK 760 >gi|154490348|ref|ZP_02030609.1| hypothetical protein PARMER_00581 [Parabacteroides merdae ATCC 43184] gi|154088959|gb|EDN88003.1| hypothetical protein PARMER_00581 [Parabacteroides merdae ATCC 43184] Length = 427 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 101/388 (26%), Positives = 154/388 (39%), Gaps = 31/388 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + +L I ++ YV R Y CPFH +K PS H + K Sbjct: 1 MR-GDSLKERILRVATIEEVVAAYVPLQRSGAG-----YVGLCPFHADKHPSLHVHPGKQ 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 F+ CF+C GD +F+ + GCSF E++ LA + +K +TD Sbjct: 55 FFKCFACGEGGDLFAFVQKIEGCSFTEAMGMLAKRYSIDSREWTVDNYAGKKKRTDGKGT 114 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 T N ++ + +L + L+ ++ + Sbjct: 115 TGKRTAGSSDKTANENSDDQLSVVNSQLSIRTIGAANRLFASL-----LQPYVPEDEALR 169 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG-RTLSKGESVKYLNSPET 239 E G+ I Y + R+RLIFPIR +G ++AF R E KY+NSP + Sbjct: 170 ETYRLFGVGIAPPEVPADYRKMRSRLIFPIRDEKGGLVAFAARRRTDGEEGAKYVNSPAS 229 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 ++ K + LY A ++ F+ + EGY D L++ AG N V+ G Sbjct: 230 PVYSKSRVLYALDRAGEAIR----------ERRFVFVTEGYKDALAMHAAGFTNTVALCG 279 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC---------HLIPGNRVNF 350 A T LRLL + RIVL D D G + K + ++ C V+ Sbjct: 280 VAFTAGHLRLLAGYTQRIVLLLDADGAGEASMEKIVAMLSCGTDPEGERLEPACLFEVSR 339 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVES 378 + L GEDPDS + G +F + I S Sbjct: 340 MQLPYGEDPDSLLHGSGFVSFRRQITTS 367 >gi|139436984|ref|ZP_01771144.1| Hypothetical protein COLAER_00118 [Collinsella aerofaciens ATCC 25986] gi|133776631|gb|EBA40451.1| Hypothetical protein COLAER_00118 [Collinsella aerofaciens ATCC 25986] Length = 631 Score = 194 bits (492), Expect = 4e-47, Method: Composition-based stats. Identities = 115/399 (28%), Positives = 182/399 (45%), Gaps = 17/399 (4%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137 SF ES++ LA AG+ L ++ + + L F+H L +D Sbjct: 1 MKRENLSFPESIRYLADRAGIEL-HDTGDRRERGTKRARIYDLCAETAQFYHTMLMRGKD 59 Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 R Y RG+ + LG+AP R +L HL Q GF+ +++I+A + + Sbjct: 60 GRPREYFASRGMGGDVCRRYCLGFAP-GRNALVSHLSQAGFTPQEMIDANVAVSRGRG-Q 117 Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257 DRF +R++FPI +G IAFGGR + KYLN+ ET +FHK +NLY F A + Sbjct: 118 LADRFYDRVMFPIFDEQGHNIAFGGR-IMGDGQPKYLNTAETSVFHKKRNLYGFNWAKEF 176 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317 + + I+VEGY D ++ +AG++NVV++LGTALTE+ ++ L + + RI Sbjct: 177 I----------VAQDTAIVVEGYTDCIACWEAGIKNVVATLGTALTEHHVKTLTRFAKRI 226 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 V FDGD G +AA +AI + V+L G DP FI +G + I Sbjct: 227 VYMFDGDAAGQKAARRAIQ---FIEQDSMDLRCVVLPDGNDPMEFITAHGGEELQARIDA 283 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 + PL+D +++ E+ TP RA+ I ++D + Y I D L + Sbjct: 284 AEPLMDFVYRSLQESSDITTPGGRAKALEDALTLIYPLRDSYMIDTYFIQIADLLGLDLE 343 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R K ++ + ++ + Sbjct: 344 TVRASSGRVFRDVAKREDAERRREQNYERQRAQAERSGS 382 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 56/521 (10%), Positives = 138/521 (26%), Gaps = 35/521 (6%) Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++A F+ D+ + DE+G + P + + K + Sbjct: 117 QLADRFY--------DRVMFPIFDEQGHNIAFGGRIMGDGQPKYLNTAETSVFHKKRNLY 168 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 A I ++A + + + + + V+A G L++ + I+ Sbjct: 169 GFNWAKEFIVAQDTAIVVEGYTDCIAC-WEAGIKNVVATLGTALTEHHVKTLTRFAKRIV 227 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 + + A + + ++L +G + + G + + + + A Sbjct: 228 YMFDGDAAGQKAARRAI---QFIEQDSMDLRCVVLPDGNDPMEFITAHGGEELQARIDAA 284 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + G L A I + + + G D ++ Sbjct: 285 EPLMDFVYRSLQESSDITTPGGRAKALEDALTLIYPLRDSYMIDTYFIQIADLLGLDLET 344 Query: 362 --------FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 F + E+ ++ +R + A Sbjct: 345 VRASSGRVFRDVAKREDAERRREQNYERQRAQAERSGSAGGRASGSRDAGRGAWASGVTP 404 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + Y D + + + A + +V Sbjct: 405 PVSAPVEEEPYDYVPLDAYGAAPVEVVDDLPPIDVPDGMGAVPAADGL-GAPAAAAPMVL 463 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L +K E LL L ++P + + + I + + + + + + Sbjct: 464 TDLERKSLAGERELLTMLTSYPDLFRTYADRICSIEWVDPRHESIAWAVLATP---PGTD 520 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + AG SAT++ L LY + R Sbjct: 521 PAACMDAARSVCPE------AATLVSAGRISATSKHPTETNIVFMLDTLELY----TIKR 570 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + ++ Q + + + A+ + + Q +++ Sbjct: 571 RMRAAQAKLRQDRSLDDEARRALTVQAAQDSQRQ-RELQKS 610 >gi|294669703|ref|ZP_06734770.1| hypothetical protein NEIELOOT_01604 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308616|gb|EFE49859.1| hypothetical protein NEIELOOT_01604 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 146 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 47/114 (41%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI DLL I ++I + V + N Y ACCPFH EKTPSF + SK FY Sbjct: 2 IPSDFIDDLLAKTDIVDIIDERVPLKKSGAN-----YMACCPFHKEKTPSFSVSPSKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 +CFSC G + FL G SF ++VQ LA AG+ +P ++E E Sbjct: 57 HCFSCGAHGSAIGFLMEQQGMSFPDAVQYLADRAGMTVPHEKGRMEAPEIRAER 110 >gi|150024919|ref|YP_001295745.1| hypothetical protein FP0829 [Flavobacterium psychrophilum JIP02/86] gi|149771460|emb|CAL42929.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 1185 Score = 193 bits (490), Expect = 7e-47, Method: Composition-based stats. Identities = 113/619 (18%), Positives = 222/619 (35%), Gaps = 61/619 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + FI+ LL I +IG+Y+D R N A PF D+KT S + +K + Sbjct: 4 IKQSFIESLLERAHIDEVIGKYLDLKRSGANL-----KAKSPFTDDKTASLVVSPAKNIW 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--------Q 114 FS G+ ++F+ C++ E+++++A+ + + +K+K + Sbjct: 59 KDFSSGKGGNMVNFIMEKEPCTYPEAIEKIASFYNEVVQYEAVEFSEKKKEQLEKKEVLR 118 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 LI + E+ + +R D I + +G+AP++ + Sbjct: 119 KTLIAVHELYKQEYKSI--EVEHPAHQEVEIKRDYDQETIIDWGIGFAPENFLYNKLSAS 176 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 K + E GL+I D++ NR+I+PI + G +I GR +S + Sbjct: 177 GK---VFQGEELGLIIRQW------DKYSNRVIYPIHDANGLLIGLAGRDVSAKPNAAKW 227 Query: 235 NSPETI----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 +P L++K K + A ++K + + EGY DV++ + G Sbjct: 228 INPNVDEHNILYNKSKVWFGLHKAKFSIRKK----------NEAFITEGYNDVIAWHRYG 277 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 ++N V+S GTA+TE Q+ L KL +IV C D D+ G+RA K I L + Sbjct: 278 LENTVASCGTAITEQQINELKKLCSKIVFCMDPDESGMRAVLKQIPLFIKQ-----GFRT 332 Query: 351 VLLSRGEDPDSFIRCYG--------KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 ++ DPD F+R Y +L + + + Sbjct: 333 EVIVLDYDPDDFVRNYHDVISLSGGLEEMFNTPSIRKDGFSLLVNEYIKKDYWKLEETLE 392 Query: 403 ELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH--RDQ 459 + L+ ++ I + + I+ L G+ ++ + Sbjct: 393 VEKNILETLVSQDILNANKLKAKANQIKSDLIHSTSLLKETELVSGKKSEQYKSELLTNS 452 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLT-------LINHPAILQEQYQELADIRYDN 512 + Q+ L K ++ ++ + I + + N Sbjct: 453 TLKANLDKQNHLAKNIQESVELKQQRKVVAIQREKYTSAFDSAEINRANGAKKLCAEIIN 512 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + + L+ + ++ + I+ + E + + + N+ Sbjct: 513 VQEKALFEIYINWIQKESGISKKAINDWIKELRSENEVDEDYDIEYELPKNVTIPFKNLE 572 Query: 573 DVRQGYQQALALYKRFRLL 591 + Y LA + + L Sbjct: 573 KTIKHYGMFLANNQIYMAL 591 >gi|76799607|ref|ZP_00781727.1| DNA primase [Streptococcus agalactiae 18RS21] gi|76585042|gb|EAO61680.1| DNA primase [Streptococcus agalactiae 18RS21] Length = 238 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 68/211 (32%), Positives = 109/211 (51%), Gaps = 8/211 (3%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 ++ I ++ + I ++IG+ V + N + CPFH EKTPSF+ + + F Sbjct: 33 AIDKEKISEIKNSVNIVDVIGEVVGLTKTGRN-----HLGLCPFHKEKTPSFNVIEDRQF 87 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRL 120 ++CF C GD F+ SF++SVQ LA +G+PL ++ KK K L+ + Sbjct: 88 FHCFGCGRSGDVFKFVEDYQHISFLDSVQVLAERSGIPLDTNFKGQVPKKPKANQSLLDI 147 Query: 121 IEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA+ F+H L +R YL ERG+ I+ F++G +P + L L K F Sbjct: 148 HRVASGFYHAYLMTTNDGERARQYLAERGVTEDLIKHFQIGLSPGGQDFLYRRLA-KEFD 206 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210 E+ ++ +GL +NS YD F NR++FP+ Sbjct: 207 EKTLMSSGLXNYSENSNQFYDSFNNRIMFPV 237 >gi|194246699|ref|YP_002004338.1| DNA primase [Candidatus Phytoplasma mali] gi|193807056|emb|CAP18492.1| DNA primase [Candidatus Phytoplasma mali] Length = 606 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 115/468 (24%), Positives = 201/468 (42%), Gaps = 43/468 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++FI + +PI +L+ + V + N + CPFH EK SF + K Sbjct: 9 KEFINKINTEVPIYDLVQENNVILKKVGKN-----FMGLCPFHSEKNASFSVSPEKNIAV 63 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 C SC G +SF + SF +V LA + V K L R+IE Sbjct: 64 CMSCKKGGRPISFYKEIKKVSFQYAVSELAQRLNI---VDLSKKIFLSNSNNHLYRIIEE 120 Query: 124 ATDFFHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----------------- 164 FF +L + K Y +ER I I+ FKLGYA Sbjct: 121 TMIFFQSNLYDRTFGKKAFKYLEEERKIKDETIKYFKLGYALSHLEENIFNNKIKNKKEF 180 Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 + +S +K FS +I+ G++ + + + Y+ F RLIFPI G+ + F GR Sbjct: 181 NNFSSLVDYLKKNFSINDLIDLGIIKENEKTGDYYNFFNERLIFPITDHYGKFVGFAGRN 240 Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 L+ E +KYL + T LF+K + LY F+ + + K + +I+ EG+ +V+ Sbjct: 241 LNNNEPIKYLFNTNTKLFNKQELLYQFYENKSEIIKK----------NQVIIYEGFFEVI 290 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 Q G++N V+++GT L+ Q+++L +L+ + +D D G + L Sbjct: 291 VSFQCGIKNTVATMGTNLSIKQIKILSELTKEFIFAYDNDFAGQES---FFKLGNYLTKE 347 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 G RV +L G+DPD + R G F+K I+++ + E + + E Sbjct: 348 GFRVKRILFPNGQDPDEYYRQKGTIQFQKFIIDNTEDFLDIKCEELSKKINYFSLDTVEK 407 Query: 405 EIHLKNCINHI--KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 E + +++K++ +Y + ++ + + +++ + Sbjct: 408 EKIKSELFSLFYKQNEKIKIHYQSILNNKYNIKIKLFFDKNNNIQKSA 455 >gi|126667775|ref|ZP_01738742.1| DNA primase [Marinobacter sp. ELB17] gi|126627723|gb|EAZ98353.1| DNA primase [Marinobacter sp. ELB17] Length = 610 Score = 192 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 111/451 (24%), Positives = 191/451 (42%), Gaps = 26/451 (5%) Query: 11 LLIHIPISN-LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + I + +S ++ ++ +R ++ CPFHDE TPSF ND+KG Y+C C Sbjct: 11 IKIRLSLSTHVLAAGIELKKRGA-----EWVGLCPFHDENTPSFSVNDTKGLYFCRGCRA 65 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPL------PVVDPKIEKKEKI---QTDLIRL 120 GD + F +A+ S ++++ LA +A + + P P + + ++ ++ L+ + Sbjct: 66 TGDIIEFHAAMNLVSTGQAIKELADLADIKVEPRQYTPRNGPAVRRPQRQAWDRSVLLDI 125 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A F A ++ER I F LGY P + L + + S+ Sbjct: 126 NVAAQYVFR---GKAEHPDFISVIEERHIPPALAAAFGLGYFPTNLAFLDSMVARPELSD 182 Query: 181 --EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + G G F RLIFPI G ++ F GRTL + KY+NSPE Sbjct: 183 LSRDQVSLGCAELGLTYTGGGSPFTGRLIFPITDPSGAIVGFSGRTLDEASKAKYINSPE 242 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNS---SSFIILVEGYMDVLSLCQAGVQNVV 295 + LF K + LY + S + I +VEGY DV++L G++ Sbjct: 243 SELFDKSRLLYALTPPRALITASPEAREFWRTLIAQDEIYVVEGYTDVIALAAFGIR-AC 301 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GT + +Q++LL K + RI +DGD PG +AA + + V + +R+ LL Sbjct: 302 AGMGTGFSSHQVQLLLKHARRIRCLYDGDRPGQQAAQRTMLTVFAEMTDDHRLTAHLLPD 361 Query: 356 GEDPDSFI--RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 DPDSF+ A + P + + ++ ++ +E N Sbjct: 362 THDPDSFLAANPDDPKAALSGLHVRQPESLWWDHYVGKLSTPSSLADQVVIERAYANRDT 421 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHS 444 + K + ++ I+ L + + Sbjct: 422 YPKTPLWQLMIARRIQQISGYLIRYPALQTQ 452 >gi|309800315|ref|ZP_07694487.1| DNA primase [Streptococcus infantis SK1302] gi|308116062|gb|EFO53566.1| DNA primase [Streptococcus infantis SK1302] Length = 209 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 49/200 (24%), Positives = 89/200 (44%), Gaps = 7/200 (3%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + I+++ + I +IG+ + + N + CPFH EKTPSF+ + K FY+ Sbjct: 3 DKRLIEEIKNNTNIVEIIGEVISLQKSGRN-----FLGLCPFHGEKTPSFNVVEDKQFYH 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD F+ +F ++V+ LA G+ + + +L + + Sbjct: 58 CFGCGRSGDVFKFIEEYQQVTFADAVRILAERLGIQMAAPVQSSVQPRSPHQNLYDMHDK 117 Query: 124 ATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 A F+H L + YL +RG+ ++ F +G AP R L + L +SE Sbjct: 118 AARFYHAILMTTKMGEEARNYLYKRGLTDDVLKHFMIGLAPAERSYLYQRLAD-DYSEND 176 Query: 183 IIEAGLLIDGDNSATSYDRF 202 ++++GL +++ Sbjct: 177 LLDSGLFYLSESNQFLIPFI 196 >gi|330686122|gb|EGG97743.1| CHC2 zinc finger domain protein [Staphylococcus epidermidis VCU121] Length = 181 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 10/183 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ I +L+ +YV ++R N Y CPFHDEKTPSF ++ K Sbjct: 1 MRIEQSVINEIKDKTDILDLVSEYVKLEKRGRN-----YIGLCPFHDEKTPSFTVSEDKQ 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP----VVDPKIEKKEKIQTD 116 +CF C G+ F + SF E+V+ L + + + Sbjct: 56 ICHCFGCKKGGNVFQFTQEIKDISFTEAVKELGERVNITVDVGNNEYQNTNTQIASDDLQ 115 Query: 117 LIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +I + E+ +++H++L K ++ YL ER I+ +GYAP+S + + L + Sbjct: 116 MIEMHELMQEYYHYALMKTVEGEKALTYLKERDFPEQLIKERGIGYAPNSSHFCHDFLEK 175 Query: 176 KGF 178 KG Sbjct: 176 KGM 178 >gi|317969503|ref|ZP_07970893.1| DNA primase [Synechococcus sp. CB0205] Length = 564 Score = 190 bits (483), Expect = 5e-46, Method: Composition-based stats. Identities = 94/449 (20%), Positives = 176/449 (39%), Gaps = 61/449 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ + +++L G + + ++ CP+HD++ PS + ++ Sbjct: 47 LTPAVLESVRERAQVTDLFGP-TELQKSGR-----EFVTRCPWHDDRRPSLSVSPTRNRV 100 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C D + +L G SF E+V LA GV + DP+ +++ + E Sbjct: 101 HCFVCGKGTDAIGWLQDRQGLSFQEAVLELARRTGVSVAEGDPEAQEQFEQ-----EWRE 155 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 L R ++ + E ++G Sbjct: 156 ------RRQLMAKRSEQRAQFHLEL-----------------------VQQLEQGGDGAD 186 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++A + A RL+ P+ + GQ F GR + + KY NS +LF Sbjct: 187 YLQARGISAYTARAWHLGFAGGRLVIPLNDASGQTAGFCGRAI-GNQEPKYRNSTNDLLF 245 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 + ++ A+ ++K +LVEG +DV+ L QAG+ N V+ LGT++ Sbjct: 246 QRNGVVFGLDQAVEAIRK----------EGTALLVEGPLDVIQLHQAGLTNAVACLGTSV 295 Query: 303 TEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSRGEDPD 360 + QL+LL + +++ DGD G A K ++ L + G + V L G+D D Sbjct: 296 SALQLQLLQRQGMKHLLVALDGDRAGQAATDKLLEQLQPQLVAGGLSASVVQLPEGQDAD 355 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETEN----RSFNTPDERAELEIHLKNCINHIK 416 +R G +A E L+V + ++ R + + +E + + + Sbjct: 356 GLLRSQGASAIEGLLVGAKHWLEWRLDRLLAPLTACTGEASLETLQAVERDGQALVEQLP 415 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 D LR ++ RL+ ++ + SG Sbjct: 416 DGVLR----RSAEQRLEMALRRSGEQESG 440 >gi|255522086|ref|ZP_05389323.1| DNA primase [Listeria monocytogenes FSL J1-175] Length = 452 Score = 190 bits (481), Expect = 9e-46, Method: Composition-based stats. Identities = 104/447 (23%), Positives = 196/447 (43%), Gaps = 38/447 (8%) Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 DRFRNR++FPI + RGQ+IAF GR + + KYLNSPET +F+K + L++F A Sbjct: 25 QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQ 84 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 ++K I L+EG+MDV+S +AGVQN V+S+GT+LTE L+ +L+ R Sbjct: 85 AIRKQ----------EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNR 134 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LI 375 ++C+DGD G+ AAYKA L++ + L G+DPD FIR G F++ Sbjct: 135 AIICYDGDRAGIEAAYKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGPEKFKEVYK 192 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + + R+ ++ I + R Y + + D + Sbjct: 193 QQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLADEFELT 252 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSL 482 + + + +K+ + P ++ S + + Sbjct: 253 IETLKQQLQQSLKNSQKSRQMASYNEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTT 312 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ ++ Q L D + ++ + L+++L F E P + + Sbjct: 313 SEQQLMKAMMESRDNFLLIKQLLGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVP 372 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + L+ L+ + + ++ + KRF+ L ++K+E+E+++ Sbjct: 373 DATMKGLISSLEMVIS-----------PDEQGKTQFEDYIRSLKRFK-LEQKKKELEQEL 420 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 A + + + + ++ + +++ Q++ Sbjct: 421 ATLNRENDKDNEIRVMLEIVQLNRQLN 447 >gi|269214559|ref|ZP_06158650.1| DNA primase [Neisseria lactamica ATCC 23970] gi|269209458|gb|EEZ75913.1| DNA primase [Neisseria lactamica ATCC 23970] Length = 131 Score = 190 bits (481), Expect = 9e-46, Method: Composition-based stats. Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 5/109 (4%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLAKTDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 +CFSC G + F+ G SF E+VQ LA G+ +P V + + E Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMVVPKVRGQNDNPE 105 >gi|313637826|gb|EFS03164.1| DNA primase [Listeria seeligeri FSL S4-171] Length = 454 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 104/447 (23%), Positives = 195/447 (43%), Gaps = 38/447 (8%) Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 DRFRNR++FPI + RGQ+IAF GR + + KYLNSPET +F+K + L++F A Sbjct: 27 QMVDRFRNRIMFPITNDRGQIIAFSGRLFDRDDGPKYLNSPETPIFNKRRTLFHFSEARQ 86 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 ++K I L+EG+MDV+S +AGVQN V+S+GT+LTE L+ +L+ R Sbjct: 87 AIRKQ----------EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTSR 136 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 ++C+DGD G+ AA+KA L++ + L G+DPD FIR G F+++ Sbjct: 137 AIICYDGDRAGIEAAFKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGADKFKEIYK 194 Query: 377 -ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + + R+ ++ I + R Y + + + + Sbjct: 195 QQRMTWTAFKIHYLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLAEEFELT 254 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSL 482 + + + +K + P ++ S + + Sbjct: 255 IETLKQQLQQSIKINQKARQTASYNEPPIDDSLMGLMPQEDTEMLYSFKQPTQKLSAHTT 314 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L+ ++ Q L + ++ ++ Q L+++L F E P + + Sbjct: 315 AEQQLMKAMMESRDSFLLIKQLLGETQFYHDNYQALYTYLIGYFAEGNEADPNKFMDSVG 374 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + L+ L+ + R ++ + KRF+ L ++K+E+E+++ Sbjct: 375 DAAMKGLISSLEMVIS-----------PEEQGRIQFEDYIRSLKRFK-LEQKKKELEQEL 422 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 A + E ++ + +++ Q++ Sbjct: 423 AGYNRDNDKENEIRVMLEIVQLNRQLN 449 >gi|284799938|ref|ZP_06390438.1| DNA primase [Neisseria subflava NJ9703] gi|284796406|gb|EFC51753.1| DNA primase [Neisseria subflava NJ9703] Length = 131 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 46/120 (38%), Positives = 63/120 (52%), Gaps = 10/120 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P DFI +LL + I ++I + V + N Y ACCPFH EKTPSF + +K FY Sbjct: 2 IPSDFIDELLSKVDIVDIIDEQVPLKKGGAN-----YMACCPFHKEKTPSFSVSPTKQFY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-----VVDPKIEKKEKIQTDL 117 +CFSC G + F+ G SF E+VQ LA G+ +P +P+I + K L Sbjct: 57 HCFSCGAHGSAIGFVMEHQGLSFPEAVQFLADRVGMTVPKVRGQEDNPEIRAERKKSNKL 116 >gi|47093462|ref|ZP_00231225.1| DNA primase [Listeria monocytogenes str. 4b H7858] gi|47018138|gb|EAL08908.1| DNA primase [Listeria monocytogenes str. 4b H7858] Length = 123 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I ++IG YV ++ N Y CPFH EKTPSF + K Sbjct: 3 RIPEEVIDQVRNQADIVDIIGNYVQLKKQGRN-----YSGLCPFHGEKTPSFSVSPEKQM 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108 ++CF C G+ SFL G +F+ESV+++A ++ + + + P+ Sbjct: 58 FHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPEER 104 >gi|13358057|ref|NP_078331.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762415|ref|YP_001752578.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|9910828|sp|Q9PPZ6|PRIM_UREPA RecName: Full=DNA primase gi|11356843|pir||E82884 DNA primase UU494 [imported] - Ureaplasma urealyticum gi|6899492|gb|AAF30906.1|AE002147_7 DNA primase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827992|gb|ACA33254.1| DNA primase [Ureaplasma parvum serovar 3 str. ATCC 27815] Length = 641 Score = 188 bits (477), Expect = 3e-45, Method: Composition-based stats. Identities = 113/502 (22%), Positives = 221/502 (44%), Gaps = 39/502 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 12 IRNAINISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 67 GDVIKFVAEYKKISYALAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + + FK+GYAP++ Y+ + Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + + +D F +R+IF I V+ F GR ++ ++ KYLN+ T Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 245 AVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K I + L + + + +D Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVNHKDNDCKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D + +G +A KL+ + + E N + +TP + + I D Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411 Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 Y ++ L+++ ++ + KKN + ++ + +S Sbjct: 412 FYVDKYVDFMKQTFSIEENLLKKVIEELLINKQCNSIQNKKNIQSYQKQTQLTNKLTTSN 471 Query: 472 VKGKLSKKPSLREAALLLTLIN 493 K L+K +++ L+N Sbjct: 472 PKVILTKIDKHFNHLVVIILMN 493 >gi|183508588|ref|ZP_02958101.1| DNA primase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|182676042|gb|EDT87947.1| DNA primase [Ureaplasma parvum serovar 14 str. ATCC 33697] Length = 639 Score = 188 bits (476), Expect = 3e-45, Method: Composition-based stats. Identities = 112/502 (22%), Positives = 220/502 (43%), Gaps = 39/502 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 12 IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 67 GDVIKFVAEYKKISYTLAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + + FK+GYAP++ Y+ + Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + + +D F +R+IF I V+ F GR ++ ++ KYLN+ T Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K I + L + + + +D Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVNHKDNDCKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D + +G A KL+ + + E N + +TP + + I D Sbjct: 353 MDEYANKHGYNATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411 Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 Y ++ L+++ ++ + KKN + ++ + +S Sbjct: 412 FYVDKYVNFMKQTFSIEENLLKKVIEELLINKQCNSIQNKKNIQSYQKQTQLTNKLTTSN 471 Query: 472 VKGKLSKKPSLREAALLLTLIN 493 K L+K +++ L+N Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493 >gi|171920175|ref|ZP_02690565.2| DNA primase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|171902551|gb|EDT48840.1| DNA primase [Ureaplasma parvum serovar 1 str. ATCC 27813] Length = 641 Score = 187 bits (475), Expect = 4e-45, Method: Composition-based stats. Identities = 113/502 (22%), Positives = 221/502 (44%), Gaps = 39/502 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 12 IRNAINISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 67 GDVIKFVAEYKKISYTLAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + + FK+GYAP++ Y+ + Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + + +D F +R+IF I V+ F GR ++ ++ KYLN+ T Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIITNEKTPKYLNTKTT 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K I + L + + + +D Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D + +G +A KL+ + + E N + +TP + + I D Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNANKSTPSLKHSYKQECFTIIKKYGDI 411 Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 Y ++ L+++ ++ + KKN + ++ + +S Sbjct: 412 FYIDKYVDFMKQTFSIEENLLKKIIEELLINKQCNSIQNKKNIQSYQKQTQVTNKLTTSN 471 Query: 472 VKGKLSKKPSLREAALLLTLIN 493 K L+K +++ L+N Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493 >gi|256004391|ref|ZP_05429372.1| DNA primase catalytic core domain protein [Clostridium thermocellum DSM 2360] gi|255991675|gb|EEU01776.1| DNA primase catalytic core domain protein [Clostridium thermocellum DSM 2360] Length = 459 Score = 185 bits (470), Expect = 1e-44, Method: Composition-based stats. Identities = 135/471 (28%), Positives = 214/471 (45%), Gaps = 33/471 (7%) Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 + +R + F LGY+P+ +L HLR+KG+ +E ++++GL I + YDRFR Sbjct: 1 MTKRKVSGSIARKFGLGYSPEEWDALYNHLRKKGYDDEILLDSGL-ILKGKNGGYYDRFR 59 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 R+IFPI RG VI FGGR L + KY+NSPET++++K KNLY A N QK Sbjct: 60 GRIIFPIFDLRGNVIGFGGRVL-DNSTPKYMNSPETLVYNKRKNLYGLNFAKNSGQK--- 115 Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 II+VEGYMDV+SL Q G+ N V+SLGTALTE Q R+L K + I++ +D Sbjct: 116 ---------RIIVVEGYMDVISLFQFGIINTVASLGTALTESQGRILKKYAEEIIISYDA 166 Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 D G+ A + +DL G V +++ G+DPD F++ G AF KL+ +L LV+ Sbjct: 167 DTAGMAATMRGLDL---LNDIGCNVKVLIIPEGKDPDEFVKKNGPEAFNKLVENALSLVE 223 Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 K NT + + + ++ I + R Y + I + E Sbjct: 224 YKIKALKSTIDTNTTEGKINFLNKAADLLSKIDNNMEREMYIKKISKEYDISQESIYAEI 283 Query: 444 SGYGRY---WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + +K R K + RL K K E LL L ++ + Sbjct: 284 LKRIKPKTVYKPLTRTLTAKNDNNRLKIEKNGKKSSYDKIIECERMLLCLLSIDNSLYKV 343 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 ++ + + + +++ +F F E+K +P E+ L + +L + Sbjct: 344 VKDKIIVDEFKDEQNKEIAKIVFKRFEEKKGIVPAELIN-LAGEETSGVFARLIQ----- 397 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 E N D + + L +++EI +Q++ E Sbjct: 398 ------GECNFDDNIKAVMDIIK-KMELYRLEDRQKEILQQLSSGNLSTED 441 >gi|186701806|ref|ZP_02971480.1| DNA primase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|186701090|gb|EDU19372.1| DNA primase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 641 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 111/502 (22%), Positives = 220/502 (43%), Gaps = 39/502 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 12 IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 67 GDVIKFVAEYKKISYALAAQEIVQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + + FK+GYAP++ Y+ + Sbjct: 127 INFLNNKNNIHVIDYLTKRNLNKNDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + + +D F +R+IF I V+ F GR ++ ++ KYLN+ T Sbjct: 187 NKLIENSFLVIDKNGN--YHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNTKTT 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 245 SVFKKDEVLYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K + + L + + + +D Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQV-MKLINSPFNIFIVDHKDNDCKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 D + +G +A KL+ + + E N + +TP + + I D Sbjct: 353 MDEYANKHGYSATSKLLDQ-QLHISEFLLLEISNTNKSTPSLKHSYKQECFTIIKKYGDI 411 Query: 419 KLRYYYSQAIRD-------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 Y ++ L+++ ++ + KKN + ++ +S Sbjct: 412 FYIDKYVNFMKQTFSIEENLLKKVIEELLINKQCNSIENKKNIQSYQKQTQITNKFTTSN 471 Query: 472 VKGKLSKKPSLREAALLLTLIN 493 K L+K +++ L+N Sbjct: 472 PKVILTKIDKHFNHLVVIMLMN 493 >gi|57506089|ref|ZP_00372011.1| DNA primase, putative [Campylobacter upsaliensis RM3195] gi|57015573|gb|EAL52365.1| DNA primase, putative [Campylobacter upsaliensis RM3195] Length = 510 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 112/552 (20%), Positives = 213/552 (38%), Gaps = 50/552 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 +++ I I +I Y+ + Y CPFH EKT SF N ++G+++CF C Sbjct: 3 LQEFKSRIDIVRIIENYLILRKEGA-----FYKGNCPFHAEKTASFVINVNRGYWHCFGC 57 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD + FL SF E+ +A + + L + + + L E+ F Sbjct: 58 GKGGDAIKFLQIYKNLSFSEAAAEVAKLENIELSFNSTQ-------KEEFAFLNELGAYF 110 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 KN ++ + +RG+D + F+LGY D +R + + + Sbjct: 111 -----KNNFNEECLAFCKKRGLDESDVGEFELGYTGDLENLVRFLKAKNYIN----LAKK 161 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETILFHKGK 246 L +N Y F RL F I+ S G+V F R L G+ KY+NS + LF+K Sbjct: 162 LGYIKENQNGFYSLFVGRLSFVIKDSFGRVRGFSTRELKAGGKLGKYVNSLNSELFNKSF 221 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 LY+F A +Y + S + + + EG+ D ++L +AG ++ V+S GTA T+ Sbjct: 222 LLYHFDKAKDYARLSKK----------LYICEGFFDAIALQKAGFKSAVASSGTAFTQSH 271 Query: 307 ---LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L + +V D D G A KA+ L + +V V + +D F+ Sbjct: 272 LSLIKRLNVENLELVFVPDKDKAGYEAVIKALWLCFENEFFNCKV-AVCKEKVKDVGEFM 330 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + Y + L + + ++ + + I + + + Sbjct: 331 QKY---DIKNLALHTYEGLEFYI-----KFAMQKAENCEAKHALFLKLKKMI--EGVSNF 380 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + + ++ + + + K + + ++++S+L + ++ Sbjct: 381 YLKN--ELYEKAALYLGVDKKEFLKAKKAFKESGENQRQMMQIIKSALNDAEFKERLIYY 438 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNE--LQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L + + + E + L +F+ S +QK E + + Sbjct: 439 AGEFLDRAFFDDEGKKRELLADESVEIYTKERQNEALKAFVLSHLYKQKESTKEPLRLKE 498 Query: 542 CERGFGELLKQL 553 EL ++ Sbjct: 499 LASKIAELKSEV 510 >gi|50122314|ref|YP_051481.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612840|emb|CAG76290.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] Length = 968 Score = 184 bits (466), Expect = 4e-44, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 151/393 (38%), Gaps = 45/393 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 P ++ L + + ++ G+ V +R D+ CPFH E TPS + Sbjct: 3 RIPESELQHLKAAVSLVEVVRGQGRTVV--KRGK-----DWVVLCPFHQENTPSMVISPD 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114 K Y+CF C G + ++ G S +V +L G +P +P E+ + Sbjct: 56 KNLYHCFGCDAGGSVIDWVMKTEGLSLPHAVDKLRRELG-SVPAAEPLPPVADIADEQER 114 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + T+F+HH+L NA + + Y R + F+LG+A +L L Sbjct: 115 QAL---LHRVTEFYHHTLLNAP-EAIAYLEKRRLNHPELVAQFRLGFA---NRTLGYRLP 167 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 K + I A L G + ++ L+ P+ S GQV GR L Sbjct: 168 SKKLKDGAAIRAQLQAIGVMRDSGHEHLAGSLVVPVIDSHGQVRELYGRKLCDKLRAGT- 226 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 K+LY L + + +S +IL E +D +S AG +NV Sbjct: 227 ----------PKHLY-----LPGPHGGVWNEQALVASKSVILCESLIDAMSFWVAGYRNV 271 Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 ++ G ++R + ++++ FD D G A + L G V+ Sbjct: 272 TAAYGVNGFTDEMRQAFIRHSVKQVLIAFDNDTAGDDGA---VKLASALAADGITPFRVV 328 Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + AF ++ ++ + + Sbjct: 329 FPAGMDANEYLCKVSEPEVAFRAVVEGAMAMGE 361 >gi|307069579|ref|YP_003878056.1| DNA primase [Candidatus Zinderia insecticola CARI] gi|306482839|gb|ADM89710.1| DNA primase [Candidatus Zinderia insecticola CARI] Length = 543 Score = 184 bits (466), Expect = 5e-44, Method: Composition-based stats. Identities = 122/497 (24%), Positives = 204/497 (41%), Gaps = 62/497 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + +IK + I N+I +YV + N Y+ CPFH EKTPSF N K ++YC Sbjct: 3 KKYIKLINKKYNILNIIKKYVFLKKIGNN-----YFGLCPFHKEKTPSFCVNLFKKYFYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C+ GD +SFL FI + L KK + + + E Sbjct: 58 FGCNFGGDMISFLMKYKKEKFINIINILLKK---------NIFFKKNSDEEKIFLIYEKI 108 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + LK + + L Sbjct: 109 NLIYKKELKKNYKAKKYIKLRNINKKIIKKFNLGYSKN------------------INKK 150 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + + + + +NR+IFPIR+ G++IAFGGR+++ KY+N+ E +F K Sbjct: 151 FKFIKKKYNFIYKNINILKNRIIFPIRNLNGKIIAFGGRSINNNYKNKYINTYENFIFKK 210 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 K Y + L +++K ++I+VEGY+D+L+L Q G N +S LGT T+ Sbjct: 211 KKEFYGLYENLKHIKKK----------KYVIIVEGYIDLLTLFQFGFLNTISILGTNFTK 260 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 Y + + K++ +I+ FDGD G A K ++L L + ++FV+L DPD+++R Sbjct: 261 YHFKKITKITNKIIFIFDGDIAGNLAINKVLNLCLSLSLKNKIISFVILPYKYDPDNYLR 320 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 YG F+K I S+ L ++L + N + T R + + KN +N+I + + Sbjct: 321 KYGILKFKKKIENSISLFNLLINKIINNNNIRTLQGRINILYNFKNIVNNINEDFIILQI 380 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 I L I ++K + + +E Sbjct: 381 INLISKILNIKINYIIKFILKKKINYEKRKVYYVKN--------------------INKE 420 Query: 485 AALLLTLINHPAILQEQ 501 LL +I P ++++ Sbjct: 421 IILLYNIIKFPFLIKKI 437 >gi|165761277|pdb|3B39|A Chain A, Structure Of The Dnag Primase Catalytic Domain Bound To Ssdna gi|165761278|pdb|3B39|B Chain B, Structure Of The Dnag Primase Catalytic Domain Bound To Ssdna Length = 322 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L +L++ F+ SL+ YL++RG+ I F +G+AP ++ + Sbjct: 5 QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 64 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ K Sbjct: 65 FGGNPENRQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPK 122 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET +FHKG+ LY + A + R +++VEGYMDV++L Q G+ Sbjct: 123 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGIN 172 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V+SLGT+ T ++LL++ + ++ C+DGD G AA+ A++ L ++ G ++ F+ Sbjct: 173 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWCALETALPYMTDGRQLRFMF 232 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L GEDPD+ +R GK AFE + +++PL L+ +TPD RA L I Sbjct: 233 LPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLI 292 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + + + LR Y Q + ++L L + Sbjct: 293 SQVPGETLRIYLRQELGNKLGILDDSQLER 322 >gi|330898881|gb|EGH30300.1| DNA primase [Pseudomonas syringae pv. japonica str. M301072PT] Length = 528 Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats. Identities = 139/543 (25%), Positives = 232/543 (42%), Gaps = 69/543 (12%) Query: 126 DFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 DF +LK+ K YL RG+ F LG+AP +L +HL ++ +I Sbjct: 2 DFHSQALKSHPSRKAAVDYLKGRGLSGEIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMI 61 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +AGLLI+ + YDRFR+R++FPIR SRG+VIAFGGR L + KYLNSPET +FHK Sbjct: 62 DAGLLIENAETGKRYDRFRDRVMFPIRDSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHK 120 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 G+ LY F A + + + II+VEGYMDV++L Q G++N V++LGTA +E Sbjct: 121 GQELYGLFEARKFNR----------NLDEIIVVEGYMDVIALAQQGLRNAVATLGTATSE 170 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L+ L+++ P ++ CFDGD G AA++A++ L +L G R F+ L GEDPD+ +R Sbjct: 171 EHLKRLFRVVPNVLFCFDGDQAGRNAAWRALEATLSNLQDGRRARFLFLPEGEDPDTLVR 230 Query: 365 CYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 G AF+ + + PL D +++ T+ + + +A + I+ + LR Sbjct: 231 SEGTDAFKARINQHAQPLADYFFEQLTKESDPRSLEGKAHMATLAAPLIDKVPGANLRIL 290 Query: 424 YSQAIRDRLQQLFQKYIT------------------------------------EHSGYG 447 Q + + + + Sbjct: 291 MRQRLTEITGLTGEAVSQLVQSAPAEAPPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQ 350 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE---AALLLTLINHPAILQEQYQE 504 + + + + + + + + P E A L TL++HP + ++ + Sbjct: 351 KKTGGPNQKKWDNKSWGKKGKRQDFEPRTPRVPPAVEPPMQAALRTLLHHPELAEKV-EN 409 Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + ++ +L L + ++ R G LL+ L + W Sbjct: 410 ASHFAAEDQSNAQLLVALIEARQKNPNLRSLQLIARWHGTEQGRLLRALAEKE-----WL 464 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + +L+ +R R L + + E +A L E+ Sbjct: 465 IEADNLEQQFFDTIT-SLSARQRERSLEHLISKARQ----------TELSAEEKIQLREL 513 Query: 625 HIQ 627 + Sbjct: 514 LNR 516 >gi|302518879|ref|ZP_07271221.1| DNA primase [Streptomyces sp. SPB78] gi|302427774|gb|EFK99589.1| DNA primase [Streptomyces sp. SPB78] Length = 490 Score = 182 bits (460), Expect = 2e-43, Method: Composition-based stats. Identities = 103/513 (20%), Positives = 196/513 (38%), Gaps = 48/513 (9%) Query: 148 GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207 G D A F +GY+P L +LR +GF++ ++I +GL DRFR RL+ Sbjct: 1 GFDQSAAAHFGVGYSPAGWDHLTRYLRGQGFTDRELITSGL-SQESRGGRPIDRFRGRLM 59 Query: 208 FPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 +PI+ G ++ FG R L + ++ KYLN+PET ++ K + LY A + ++ R Sbjct: 60 WPIKDIGGDIVGFGARRLREDDNGPKYLNTPETPVYRKSQVLYGIDLAKKDIARASRA-- 117 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP-----RIVLCF 321 ++VEGY DV++ +GV V++ GTA +++L +L R++ F Sbjct: 118 --------VVVEGYTDVMACHLSGVTTAVATCGTAFGTEHIKILRRLLMDNGSARVIFTF 169 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 DGD G +AA +A + + DP G+ A +L+ +PL Sbjct: 170 DGDAAGQKAALRAFEDDQKFAAE---TYIAIAPDNMDPCDLRLAKGEQAVAELVEPRVPL 226 Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ------QL 435 + ++ TP RA + +K+ LR+ + + L Q Sbjct: 227 FEFALRQIVSRYDLETPAGRAAALDEAAPVVASVKNVALRHAVAVQLAGMLGYGPMDQQE 286 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------EAALLL 489 + + + + R + + + + G LR E LL Sbjct: 287 VVRRVATVARWAREHRGEPLPGGPRRAATATSGAPQRPGNSGPALILRNPAHMTERELLK 346 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + P ++ + + + + ++ Sbjct: 347 LALQRPELVSPAFDAYEIDEFTAEPYAAVRQAIADAGGAEEGVHDAM-----------AY 395 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSRQKEEIEKQIAQ 604 L + D + + TE + +R+ + ++ R + R+ E++ + Sbjct: 396 LTAVREAAPDDRVRAMVTELAVEPIRRRVVDEIYASEQLVRVRVRAVQRRVTELQGTFTR 455 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 V+A+G+ + A + S L + ++ Q A Sbjct: 456 VSAQGDQARAAEVQSELWVLEQYGRALQQQGAA 488 >gi|163791804|ref|ZP_02186178.1| DNA primase [Carnobacterium sp. AT7] gi|159872926|gb|EDP67056.1| DNA primase [Carnobacterium sp. AT7] Length = 141 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P + + + I +++ QYV ++ N + CPFH+E+TPSF + K Sbjct: 3 MMIPEETVNKIRQETNIVDVVSQYVQLKKKGKNL-----FGFCPFHEERTPSFSVTEEKQ 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV-----DPKIEKKEKIQT 115 ++CFSC G+ +FL + G SF E+V + A ++ L D K + + + Sbjct: 58 IFHCFSCGRGGNVFTFLMEVDGLSFPEAVIKTADLSQFQLDESLVQDHDHKNQPTDSTKE 117 Query: 116 DLIRLIEVATDFFHHSLKNA 135 LIR+ E + + FHH L N Sbjct: 118 KLIRVHEESAELFHHILLNT 137 >gi|7767196|pdb|1DD9|A Chain A, Structure Of The Dnag Catalytic Core gi|7767197|pdb|1DDE|A Chain A, Structure Of The Dnag Catalytic Core Length = 338 Score = 181 bits (458), Expect = 4e-43, Method: Composition-based stats. Identities = 111/331 (33%), Positives = 182/331 (54%), Gaps = 12/331 (3%) Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L +L++ F+ SL+ YL++RG+ I F +G+AP ++ + Sbjct: 17 QRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 76 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + + +I+AG+L+ ++ SYDRFR R++FPIR RG+VI FGGR L ++ K Sbjct: 77 FGGNPENRQSLIDAGMLV-TNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVL-GNDTPK 134 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET +FHKG+ LY + A + R +++VEGYMDV++L Q G+ Sbjct: 135 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGIN 184 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V+SLGT+ T ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ Sbjct: 185 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMF 244 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L GEDPD+ +R GK AFE + +++PL L+ +TPD RA L I Sbjct: 245 LPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLI 304 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 + + + LR Y Q + ++L L + Sbjct: 305 SQVPGETLRIYLRQELGNKLGILDDSQLERL 335 >gi|216906077|ref|YP_002333627.1| primase [Abalone shriveling syndrome-associated virus] gi|216263170|gb|ACJ71994.1| primase [Abalone shriveling syndrome-associated virus] Length = 542 Score = 180 bits (457), Expect = 4e-43, Method: Composition-based stats. Identities = 104/422 (24%), Positives = 182/422 (43%), Gaps = 40/422 (9%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 ++ + IS+++G +V R G + CPFH+EKTPSF +D G +YCF C+ Sbjct: 6 EIKQKVKISDVVGGHVRLTER-----SGRLFGLCPFHEEKTPSFIVSDELGKFYCFGCNA 60 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 GD FLS LLG S E+++ LA G K + ++ + F Sbjct: 61 HGDVFDFLSKLLGISDHEALEYLAKDTG------TIIDSKPDTKTMFFAKV----AEIFM 110 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 SL + YL +RG+D AI+++ +G+ + K F++ EA Sbjct: 111 VSLLDNV--EALNYLKKRGVDQTAIKLWSIGF--------FSLEKLKEFTDNLTSEARES 160 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNL 248 T+ ++ NR+IFPI G +IAF GR L ++ KY+N+ T F KG Sbjct: 161 FSDFVQLTALNQLANRIIFPIHDKTGAIIAFSGRNLDIETQTPKYINTKNTESFKKGSCF 220 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y L+K I +VEG+ DV+ + G++ ++++GTA+T+ +R Sbjct: 221 YGLHRCKQTLKK-----------DSIYVVEGFFDVILMDTLGLK-AIATMGTAITDDHVR 268 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 +L + V FDGD G A +K + + + E+ + + + Sbjct: 269 ILEDRQQKFVFLFDGDSAGQSAIFKLFSKRMIVKYSLFSCYWAVPLSEEEDAASLALQDQ 328 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 F ++ + L + + ++ P + L++ ++ I + +R + Sbjct: 329 AKFRDILAQPLDMYEFIYNYVYGTELPENPTRTDHM--RLESMLSLIAQKIVRNSMRERF 386 Query: 429 RD 430 D Sbjct: 387 ID 388 >gi|270614375|ref|ZP_06221721.1| DNA primase [Haemophilus influenzae HK1212] gi|270317997|gb|EFA29284.1| DNA primase [Haemophilus influenzae HK1212] Length = 111 Score = 180 bits (457), Expect = 5e-43, Method: Composition-based stats. Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 5/102 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + PR FI DLL I ++I V + DY ACCPFH EKTPSF + K F Sbjct: 4 SIPRPFIDDLLTKSDIVDVINTRVKLKKAGR-----DYQACCPFHHEKTPSFTVSQKKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 Y+CF C G+ +SFL FIE+++ LAA+AG+ +P Sbjct: 59 YHCFGCGAHGNAISFLMDYDKLEFIEAIEELAAMAGLEIPYE 100 >gi|27497172|gb|AAN64202.1| DnaG primase-like [Photorhabdus luminescens] Length = 925 Score = 180 bits (457), Expect = 6e-43, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 152/391 (38%), Gaps = 37/391 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + + ++ Q +R DY CPFH EKTPS + +K Sbjct: 3 RIPEAELQHLKAAVSLVAVVEQQGRQLFKRGK-----DYVLLCPFHQEKTPSMVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116 Y+CF C G L ++ G S +V+RL G + V + + + Sbjct: 58 LYHCFGCDAGGSVLDWVMKTEGLSLRHAVERLRGELGENPAIAPLVQPNEPAVLAEDEAG 117 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+ +F+H +L NA + L Y R + FK G A + + K Sbjct: 118 RQALLNRVVEFYHQTLLNAP-EALAYLEKRRLNHPELVACFKPGLANRTLGYRLPASKYK 176 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 S I L+ G ++ FR L+ P+ GQ+ GR + + N+ Sbjct: 177 AGS---AIRTRLMAAGILRDNGHEHFRGSLVIPVIDRHGQIREIYGRKIGEDLR---KNT 230 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P ++LY L + + +S+ +IL E +D +S AG +NV + Sbjct: 231 P--------RHLY-----LPGAHGGVWNEPAMAASASLILCESLIDAMSFWVAGYRNVTA 277 Query: 297 SLG-TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 + G T + L + R +++ FD D G AA + L G V V+ Sbjct: 278 AYGVNGFTPDHWQALKQHQVRQVLIAFDNDPAGNDAA---VKLAAELTATGIAVFRVVFP 334 Query: 355 RGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + AF L+ ++ + D Sbjct: 335 EGMDANGYLCQVAEPERAFGLLLDSAVSMQD 365 >gi|15828924|ref|NP_326284.1| DNA primase [Mycoplasma pulmonis UAB CTIP] gi|18202663|sp|Q98QB3|PRIM_MYCPU RecName: Full=DNA primase gi|14089867|emb|CAC13626.1| DNA PRIMASE [Mycoplasma pulmonis] Length = 602 Score = 180 bits (455), Expect = 8e-43, Method: Composition-based stats. Identities = 126/618 (20%), Positives = 243/618 (39%), Gaps = 42/618 (6%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 +L +SNLIG+ + + +WA CPFHD+K S +D K + CFSC+V Sbjct: 10 KILEKTTLSNLIGKLISIKPKGK-----SFWALCPFHDDKNASLSISDQKAMFSCFSCNV 64 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 +G F S L S++E LA + + EK + + I + +A +F Sbjct: 65 RGGLFVFYSKFLNKSYVEVANMLAKEFDLDFHFDQQEKEKYNENEQLFIDVTSIANHYFK 124 Query: 130 HSLKN--ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 SLK+ + +L +L RGI F++GY + K + Sbjct: 125 VSLKSQVHSNSKLVDFLKSRGISRETASEFEIGYD----DGNFWKIPNKEKKNFSFFLSN 180 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKN 247 LI + YD F R++FPI +S G V+ F GR L + +KYLNSPE+++F K K Sbjct: 181 NLIVKKETNQYYDFFYKRVVFPIHNSFGDVVGFSGRALDENN-IKYLNSPESLVFKKHKI 239 Query: 248 LYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL 307 LYN+ A + + + EG+MD ++L + G++N ++ +GT L+ QL Sbjct: 240 LYNWAKAKE----------KAIQEKKLYITEGFMDTIALYKIGIKNAIAIMGTNLSNEQL 289 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 L+ ++ DGD G A Y ++ + ++++ + +DPD ++ G Sbjct: 290 ELI-PKDIELIFFLDGDQAGKNAVYN---ILKKIIKMRSKISVIENDSKQDPDELLKQKG 345 Query: 368 KTAFEKLIVESLPLVDMLWKR--ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 ++LI ++ T + N + ++ ++ + Y Sbjct: 346 ANFLKELIEKNKKPAIDYLYEFLLTSKYNINNSEHLISFVNDFAPLLSS-QNNIVIDKYE 404 Query: 426 QAIRDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + +++ ++ +Y R ++ ++ + K + + Sbjct: 405 NLLMKHSINIRKFLTYQNQKYDRINQYNSLQQRFYEEPKQKKKANSREEILKKQYQNLYV 464 Query: 483 REAALLLTLINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + LL + + + + +N + KL L QK E + Sbjct: 465 KLLLSLLNSNALLEYFLRHNIEERIIFEQTNNGQESKLKDILRKIIKIQKEKKSETTIED 524 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLL------S 592 L L L + ++ + ++ + + Y + K + L Sbjct: 525 LPLEDQEILRWYLQKDSWFKSDYAKEGDLDLLANQISESYLEYEKSQKISKTLEMPSLDE 584 Query: 593 RQKEEIEKQIAQVTAKGE 610 +++ +++ I Q +K + Sbjct: 585 EKQKILKRVILQRRSKND 602 >gi|225551026|ref|ZP_03771972.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225378841|gb|EEH01206.1| DNA primase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 392 Score = 179 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 184/400 (46%), Gaps = 31/400 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 12 IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 66 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 67 GDVIKFVAEYKKISYALAAQEILQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 126 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + FK+GYAP++ Y+ + Sbjct: 127 INFLNNKNNIHVIDYLAKRNLNKSDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 186 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + +D F +R+IF I V+ F GR ++ ++ KYLN+ T Sbjct: 187 NKLIENSFLVIDKNG--NYHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNTKTT 244 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 245 SVFKKDEILYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 293 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K I + L + + + +D Sbjct: 294 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 352 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 D + +G +A KL+ + L + + L + Sbjct: 353 MDEYANKHGYSATSKLLDQQLHISEFLLLEISNTNKSTPH 392 >gi|50122324|ref|YP_051491.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612850|emb|CAG76300.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] Length = 963 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 149/393 (37%), Gaps = 45/393 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 P ++ L + + ++ G+ V +R + CPFH E TPS + Sbjct: 3 RIPESELQHLKAAVSLVEVVRGQGRKVV--KRGKG-----WVVLCPFHQENTPSCVISPD 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114 K Y+CF C G L ++ G S +V +L AG +P E+ + Sbjct: 56 KNLYHCFGCDAGGSVLDWVMKTEGLSLPHAVDKLRREAG-EMPATAALPPVADIANEQER 114 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + T+F+HH+L NA + + Y R + F+LG+A +L L Sbjct: 115 QAL---LHRVTEFYHHTLLNAP-EAVAYLEKRRLHHPELVAQFRLGFA---NRTLGYRLP 167 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 K + I A L G + ++ L+ P+ GQV GR L Sbjct: 168 SKKLKDGAAIRAQLQAIGVMRDSGHEHLAGSLVVPVIDINGQVRELYGRKLCDKLRAGT- 226 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 K+LY L + + +S +IL E +D +S AG +NV Sbjct: 227 ----------PKHLY-----LPGPHGGVWNEQALVASRSVILCESLVDAMSFWVAGYRNV 271 Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 ++ G ++R + ++++ FD D G A + L G V+ Sbjct: 272 TAAYGVNGFTDEMRQAFIRHGVKQVLIAFDNDTAGDDGA---VKLASALAADGIAPFRVV 328 Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + AF L+ +LP+ + Sbjct: 329 FPSGMDANGYLCQVAEPEAAFGLLVDGALPMGE 361 >gi|289811715|ref|ZP_06542344.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 98 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 42/100 (42%), Positives = 55/100 (55%), Gaps = 5/100 (5%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N Y ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLIDVRVKLKKQGKN-----YHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C G+ + FL F+E+V+ LAA+ + +P Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIP 98 >gi|225550889|ref|ZP_03771838.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380043|gb|EEH02405.1| DNA primase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 386 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 184/400 (46%), Gaps = 31/400 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + IS++I Y+ ++ N YWA CPFH++ S ND K + CF+C+ Sbjct: 6 IRNAVNISDVIQNYIKVIKKGNN-----YWAICPFHNDTNESLSINDKKQIFKCFACNHA 60 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE--KKEKIQTDLIRLIEVATDFF 128 GD + F++ S+ + Q + + + L +++ + +E + + L + +F Sbjct: 61 GDVIKFVAEYKKISYALAAQEILQLMNLDLNLLNHLQKISPQEIKKNKVFDLNKQIQKWF 120 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS---------RYSLREHLRQKGFS 179 + L N + + YL +R ++ + FK+GYAP++ Y+ + Sbjct: 121 INFLNNKNNIHVIDYLAKRNLNKSDLAYFKIGYAPNNDELLNLIKSNYNNLIQENDEFEL 180 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + I + L+ID + +D F +R+IF I V+ F GR ++ ++ KYLNS T Sbjct: 181 NKLIENSFLVIDKNG--NYHDFFNDRIIFSIYDHLNNVVGFSGRIIASEKTPKYLNSKTT 238 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +F K + LYNF + ++ + +VEG+MDV+++ ++ NVV+++G Sbjct: 239 SVFKKDEILYNFH-----------NVITIENNHQLFIVEGFMDVITIHKSNKPNVVATMG 287 Query: 300 TALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 LT L L+ + ++LCFD D G A K I + L + + + +D Sbjct: 288 VELTNKHLELIKSYGIKDLILCFDNDQAGFLATKKQI-MKLINSPFNIFIVDHKDNDCKD 346 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 D + +G +A KL+ + L + + L + Sbjct: 347 MDEYANKHGYSATSKLLDQQLHISEFLLLEISNTNKSTPH 386 >gi|261884441|ref|ZP_06008480.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 124 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + I+++ I I +YV+ +R N ++ CPFH E TPSF ++ K Sbjct: 6 RIAEESIEEIRTKTDIVEFISEYVNLTKRGRN-----WFGLCPFHGENTPSFSVSEDKQI 60 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 ++CF C G+ ++FL + F+E+V L G+ + Sbjct: 61 FHCFGCGAGGNAITFLMDIENIPFVEAVATLKDRIGIHVDAGTQAQ 106 >gi|218512957|ref|ZP_03509797.1| DNA primase [Rhizobium etli 8C-3] Length = 117 Score = 178 bits (450), Expect = 3e-42, Method: Composition-based stats. Identities = 56/101 (55%), Positives = 74/101 (73%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + F+ ++ +PISN++ + V WD+RKTN +GDYWACCPFH EK+PSFHC D KG Sbjct: 1 MRFSNTFLDEIRDRVPISNVVARRVSWDKRKTNVSRGDYWACCPFHGEKSPSFHCEDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C V GDH FL+ L G SF E+VQ++A +AGVP+P Sbjct: 61 RYHCFGCGVTGDHFRFLTELEGLSFPEAVQQIADMAGVPMP 101 >gi|50122331|ref|YP_051498.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|50122340|ref|YP_051507.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612857|emb|CAG76307.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49612866|emb|CAG76316.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] Length = 959 Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 150/393 (38%), Gaps = 45/393 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 P ++ L +P+ ++ G+ V +R D+ CPFH E TPS + Sbjct: 3 RIPESELQHLKAAVPLVEVVRAQGRKVV--KRGK-----DFVVLCPFHQENTPSCVISPE 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114 K Y+CF C G L ++ G S +V +L G +P +P E+ + Sbjct: 56 KNLYHCFGCDAGGSVLDWVMKTEGLSLPHAVDKLRGELG-SVPAAEPLPPVSDIANEQER 114 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + T F+HH+L NA + + Y R + F+LG+A + + Sbjct: 115 QAL---LHRVTAFYHHTLLNAP-EAIAYLEKRRLNHPELVAQFRLGFANRTLGYRLPSSK 170 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 K + + L G ++ ++ L+ P+ GQV GR + Sbjct: 171 LKDG---ATVRSQLQAIGVLRSSGHEHLAGSLVVPVIDMSGQVRELYGRKVGDRLRAGTP 227 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N +LY L + + +S +IL E +D +S AG +NV Sbjct: 228 N-----------HLY-----LPGPHGGVWNEQALVASKSVILCESLIDAMSFWVAGYRNV 271 Query: 295 VSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 ++ G ++R + ++++ FD D G A + L + G V+ Sbjct: 272 TAAYGVNGFTDEMRKAFIGHGVKQVLIAFDNDTAGDDGA---VKLASSLVAEGITPFRVV 328 Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + AF ++ ++ + + Sbjct: 329 FPSGMDANEYLCKVSEPEQAFRAVVEGAMAMGE 361 >gi|71065816|ref|YP_264543.1| DNA primase [Psychrobacter arcticus 273-4] gi|71038801|gb|AAZ19109.1| probable DNA primase [Psychrobacter arcticus 273-4] Length = 720 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 5/131 (3%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P ++ L + ++IG++ R G++ CCPFH EK+PSF+ N K Sbjct: 1 MSIPNHILEQLNSQADLVSIIGRHTTLKRAG-----GEFKGCCPFHGEKSPSFYVNPQKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C V G+ +SFL +FIE+V L+ G+ +P + + ++ + Sbjct: 56 IYHCFGCSVGGNAISFLRDYENLTFIEAVNELSKQTGIEVPKEEQQNVSYQRAKPKPKSA 115 Query: 121 IEVATDFFHHS 131 I+ AT H Sbjct: 116 IKPATSATHLQ 126 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 97/331 (29%), Positives = 157/331 (47%), Gaps = 19/331 (5%) Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 +L L+E F+ H+L + +Y RGI E F LGYAP Sbjct: 208 SFDNNNDSNEDGNLYDLLEKIQQFYQHNL--SIHPHAKHYFLSRGISDEIFETFGLGYAP 265 Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223 L Q + + ++A L+ S YD R+R+IFPIR ++G+ I FGGR Sbjct: 266 FGWQHLEHQFPQ----DIEGLKALGLVRRSESGRDYDLLRDRVIFPIRDNQGRTIGFGGR 321 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 L KY+NS ++ +FHK LY ++ + S+ ++VEGYMDV Sbjct: 322 ALDDEVKPKYINSSDSPVFHKQHVLYGYYESRQ------------KRSNDWLVVEGYMDV 369 Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 ++L Q G+ ++S+GTA+ E Q+ L L+P + L FDGD G +AA++ +++ L L Sbjct: 370 IALYQVGIYGAIASMGTAINESQISRLLTLNPTLTLSFDGDSAGQKAAWRTLEVALPVLS 429 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + F+ L DPD+FI+ G A + IV ++PL ++ +E + +A+ Sbjct: 430 DEKELRFLTLPNNHDPDTFIKSQGADAMREQIVNAMPLSQYIFAYLSERHDLTLVEGKAK 489 Query: 404 LEIHLKNCINHIK-DQKLRYYYSQAIRDRLQ 433 L ++ + RY + I +L Sbjct: 490 LMSQVRALTTALPKGSSFRYLLNNDIYQKLG 520 >gi|256004392|ref|ZP_05429373.1| zinc finger CHC2-family protein [Clostridium thermocellum DSM 2360] gi|255991676|gb|EEU01777.1| zinc finger CHC2-family protein [Clostridium thermocellum DSM 2360] Length = 129 Score = 175 bits (443), Expect = 2e-41, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 7/122 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 YP + I+++ + I +++G+YV +R+ N Y+ CPFH EKTPSF + +K Y Sbjct: 5 YPEELIEEIRMSNDILSVVGEYVKLERKGKN-----YFGLCPFHSEKTPSFSVDPNKQLY 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK--KEKIQTDLIRL 120 YCF C G + F+ + +IE+V+ LA A + LP D + + EK + L + Sbjct: 60 YCFGCGKGGSVIQFVMEVENLDYIEAVKMLAERARIQLPEGDNEKKGLLPEKSRNFLELM 119 Query: 121 IE 122 ++ Sbjct: 120 LK 121 >gi|50123202|ref|YP_052369.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|50123211|ref|YP_052378.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49613728|emb|CAG77179.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] gi|49613737|emb|CAG77188.1| DnaG primase-like protein [Pectobacterium atrosepticum SCRI1043] Length = 972 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 45/393 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 P ++ L +P+ ++ G+ V +R D+ CPFH EKTPS + Sbjct: 3 RIPESELQHLKAAVPLVEVVRAQGRQVF--KRGK-----DWVVLCPFHQEKTPSCVISLE 55 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----KIEKKEKIQ 114 K Y+CF C G + ++ G S +V RL A G LP V P E+ + Sbjct: 56 KNLYHCFGCDAGGSVIDWVMKTEGLSLHRAVDRLRAELG-ALPAVAPLPPVADIADEQER 114 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + DF+HH+L NA + + Y + F+LG+A +L L Sbjct: 115 QAL---LTRVIDFYHHTLLNAP-EAIAYLEKRHLNHPELVAQFRLGFA---NRTLAYRLP 167 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 K + I L G + ++ L+ P+ GQV GR +S Sbjct: 168 PKKLKDGAAIRGQLQAIGVMRDSGHEHLAGSLVVPVIDLNGQVRELYGRKVSTELRKGT- 226 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 L + + + +IL E +D +S AG +NV Sbjct: 227 ---------------PLHLYLPGPHGGVWNEQALVAGKTVILCESLIDAMSFWVAGYRNV 271 Query: 295 VSSLGTALTEYQLR--LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 ++ G ++R + ++++ FD D+ G AA K + + G V+ Sbjct: 272 TAAYGVNGVTDEMRQAFIRHGVKQVLIAFDNDEAGNTAAVKLAE---SLVTDGITPFRVV 328 Query: 353 LSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ +TAF L+ +LP+ + Sbjct: 329 FPSGMDANGYLCQVAEPETAFGLLVDGALPMGE 361 >gi|120536958|ref|YP_957016.1| DNA primase catalytic core [Marinobacter aquaeolei VT8] gi|120326792|gb|ABM21101.1| DNA primase catalytic core, N-terminal domain [Marinobacter aquaeolei VT8] Length = 666 Score = 174 bits (440), Expect = 5e-41, Method: Composition-based stats. Identities = 105/451 (23%), Positives = 180/451 (39%), Gaps = 51/451 (11%) Query: 9 KDLLIHIPISNLIGQY-----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + H ++ +Y V+ + A CPF +EKTPSF ND KG Y Sbjct: 36 EKIKQHY----VLSRYIEDSGVELKQMGREA-----VGLCPFKEEKTPSFSVNDEKGVYL 86 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI---------Q 114 C C GD +++++ G S +++ LA G + + +K + + Sbjct: 87 CRGCGATGDIITYVAESTGVSQGRAIRLLAEKMGYQIRSESDRQGEKGRKASTSINRASR 146 Query: 115 TDLIRLIEVATDFFHHSL---KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS------ 165 +D+I + + H L + + YL +R + ++ + LG+ P Sbjct: 147 SDMIEVHDHTAQVAHAYLLCVLSDPQHPVSRYLKQRAFGPNLVKRYGLGFLPSDSPLWSH 206 Query: 166 -RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 S + + FS F+ RL+FPI + G+ +AF GR Sbjct: 207 ISGSSAYNAQPTSFSAPHWRTLAQESGLLKDRHQVSMFQGRLLFPITNGDGRCVAFSGRV 266 Query: 225 LSKGE------SVKYLNSPETILFHKGKNLYN--FFGALNYLQKSIRKDVRRNSSSFIIL 276 + E KYLNSPE+ +F K + LY + A + R S++ ++ Sbjct: 267 VPGMESTAIMPDRKYLNSPESFIFSKSQTLYGVTPWHATLNHEGVREAWRRIKSANRVVA 326 Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336 VEG DVL + + V+SLGTA+T+ + LL++ + I + DGD G+ A+ +A+ Sbjct: 327 VEGVTDVLRIAELD-TWAVASLGTAITQTHIALLFRFADTICMLTDGDSAGIAASERALL 385 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN 396 + L G R L + EDPD++ F+ ++ P + W + Sbjct: 386 IGFSQLSAGKRFVAAHLPQKEDPDTY--------FQGVVQCPNPC-EHFWHLISGLPHAQ 436 Query: 397 TPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 + I + N I D L Sbjct: 437 PEQVWFDRVIGMVNSPVSIGDAVLIDQALSE 467 >gi|317009820|gb|ADU80400.1| DNA primase DNA G [Helicobacter pylori India7] Length = 263 Score = 173 bits (439), Expect = 5e-41, Method: Composition-based stats. Identities = 78/268 (29%), Positives = 124/268 (46%), Gaps = 20/268 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M ++F + L I I ++ Y+D + N + ACCPFHDE+ SF + K Sbjct: 1 MKI-KNF-EGLKDRIQILEVLENYIDLYKIGAN-----FKACCPFHDERNASFIVSPEKN 53 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y CF C V GD L FL +FIE+V+ +A I L K + L + Sbjct: 54 IYKCFGCGVSGDALKFLQEYKKLNFIEAVEEVAQIYHYALEYETD---AKIEQNNHLKEI 110 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + A + F LKN + L Y ++R I IE + LG+ L + ++ FS Sbjct: 111 LAFANNLFKERLKNEP-RALEYLTNKRAISLEMIEAYDLGFCLP----LDLEVLKERFSV 165 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT-----LSKGESVKYLN 235 ++I +GL + + R+ P++ S+GQ+ +F R L ++ KY+N Sbjct: 166 SELISSGLFSNKNEQQELKCFCNYRITIPLKDSKGQIRSFSARLYIPRFLRNDKAPKYIN 225 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIR 263 ET LF+K L+N+ AL +++ R Sbjct: 226 GRETSLFNKSFFLFNYHRALENIKEKNR 253 >gi|9256898|pdb|1EQN|A Chain A, E.Coli Primase Catalytic Core gi|9256899|pdb|1EQN|B Chain B, E.Coli Primase Catalytic Core gi|9256900|pdb|1EQN|C Chain C, E.Coli Primase Catalytic Core gi|9256901|pdb|1EQN|D Chain D, E.Coli Primase Catalytic Core gi|9256902|pdb|1EQN|E Chain E, E.Coli Primase Catalytic Core Length = 321 Score = 173 bits (439), Expect = 6e-41, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 174/330 (52%), Gaps = 12/330 (3%) Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 + L +L + F+ SL+ YL++RG+ I F +G+AP ++ + Sbjct: 4 QRQTLYQLXDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKR 63 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 + + +I+AG L+ ++ SYDRFR R+ FPIR RG+VI FGGR L ++ K Sbjct: 64 FGGNPENRQSLIDAGXLV-TNDQGRSYDRFRERVXFPIRDKRGRVIGFGGRVL-GNDTPK 121 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET +FHKG+ LY + A + R +++VEGY DV++L Q G+ Sbjct: 122 YLNSPETDIFHKGRQLYGLYEAQQDNAEPNR----------LLVVEGYXDVVALAQYGIN 171 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V+SLGT+ T ++LL++ + ++ C+DGD G AA++A++ L + G ++ F Sbjct: 172 YAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYXTDGRQLRFXF 231 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L GEDPD+ +R GK AFE ++ PL L+ +TPD RA L I Sbjct: 232 LPDGEDPDTLVRKEGKEAFEARXEQAXPLSAFLFNSLXPQVDLSTPDGRARLSTLALPLI 291 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + + + LR Y Q + ++L L + Sbjct: 292 SQVPGETLRIYLRQELGNKLGILDDSQLER 321 >gi|93005953|ref|YP_580390.1| DNA primase [Psychrobacter cryohalolentis K5] gi|92393631|gb|ABE74906.1| DNA primase [Psychrobacter cryohalolentis K5] Length = 716 Score = 173 bits (439), Expect = 7e-41, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 5/112 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P ++ L + ++IG++ R + ++ CCPFH EK+PSF+ N K Sbjct: 1 MSIPNHILEQLNSQADLVSIIGRHTTLKRAGS-----EFKGCCPFHGEKSPSFYVNPQKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 Y+CF C V G+ +SFL +FIE+V L+ G+ +P + + ++ Sbjct: 56 IYHCFGCSVGGNAISFLRDYENLTFIEAVNELSKQTGIEVPKEEQQNVSYQR 107 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 120/541 (22%), Positives = 212/541 (39%), Gaps = 38/541 (7%) Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 +L L+E F+ H+L + +Y RGI E F LGYAP Sbjct: 206 NDNSISDKDGNLYELLEQIQQFYQHNL--SIHPHAKHYFLSRGISDEIFETFGLGYAPFG 263 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 L Q + + ++A L+ S YD R+R+IFPIR ++G+ I FGGR L Sbjct: 264 WQHLEHQFPQ----DIEGLKALGLVRQSESGRDYDLLRDRVIFPIRDNQGRTIGFGGRAL 319 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 KY+NS ++ +FHK LY ++ + + ++VEGYMDV++ Sbjct: 320 DDEVKPKYINSSDSPVFHKQHVLYGYYESRQ------------KRADNWLVVEGYMDVIA 367 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L QAG+ ++S+GTA+ E Q+ L L+P + L FDGD G +AA++ +++ L L Sbjct: 368 LYQAGIYGAIASMGTAINESQISRLLTLNPTLTLSFDGDSAGQKAAWRTLEVALPVLSDD 427 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L DPD+FI+ G A + I ++PL ++ +E + +A+L Sbjct: 428 KELRFLTLPNNHDPDTFIKSQGGDAMREQIANAMPLSQYIFAYLSERHDLTLVEGKAKLM 487 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 ++ + Y L I + G R A+ Sbjct: 488 SQVRALTMALPKGSSFKY-----------LLNNDIYQKLGGKRSQNVEAKDALLDFDGDM 536 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL-WSFLFS 524 + L L + +L E + + ++ + + N+ L+ + W L Sbjct: 537 TISQQLQLCFLFQPRALLEDPV-EWIWQQSGLINLKLPAHIQKKSANDALRAITWEDLQD 595 Query: 525 DFVEQKYFLPEEIHQRLCERGFGE---LLKQL--DRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L +L L Q + W +A Sbjct: 596 TALLDIVTAIKRCMKHLPIDANAAAHFVLSNLSPMNQATLSNSWGGFYKALTTRNVLSLD 655 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMI 638 + +LL R ++ +++ + + + L + Q + SQ A + Sbjct: 656 DLIEELV-SQLLERNIKKKMQELIKNPDHIKQAIVNMQAQHLSNWIRAQRAERSSQMATV 714 Query: 639 E 639 + Sbjct: 715 K 715 >gi|330938478|gb|EGH42081.1| DNA primase [Pseudomonas syringae pv. pisi str. 1704B] Length = 502 Score = 173 bits (438), Expect = 7e-41, Method: Composition-based stats. Identities = 130/516 (25%), Positives = 222/516 (43%), Gaps = 68/516 (13%) Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 F LG+AP +L +HL ++ +I+AGLLI+ + YDRFR+R++FPIR Sbjct: 3 EIARDFGLGFAPPGWDNLYKHLSSDSLQQKVMIDAGLLIENAETGKRYDRFRDRVMFPIR 62 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 SRG+VIAFGGR L + KYLNSPET +FHKG+ LY F A + + + Sbjct: 63 DSRGRVIAFGGRVL-GDDKPKYLNSPETPVFHKGQELYGLFEARKFNR----------NL 111 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 II+VEGYMDV++L Q G++N V++LGTA +E L+ L+++ P ++ CFDGD G AA Sbjct: 112 DEIIVVEGYMDVIALAQQGLRNAVATLGTATSEEHLKRLFRVVPNVLFCFDGDQAGRNAA 171 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRET 390 ++A++ L +L G R +F+ L GEDPD+ +R G AF+ + + PL D +++ T Sbjct: 172 WRALEATLSNLQDGRRAHFLFLPEGEDPDTLVRSEGTDAFKARINQHAQPLADYFFEQLT 231 Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT--------- 441 + + + +A + I+ + LR Q + + + Sbjct: 232 KESDPRSLEGKAHMATLAAPLIDKVPGANLRILMRQRLTEITGLTGEAVSQLVQSAPAEA 291 Query: 442 ---------------------------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + + + + + + Sbjct: 292 PPSYDPYVDYDAMPDFADYQPQGGYEPQQEWTQKKTGGPNQKKWDNKSWGKKGKRQDFEP 351 Query: 475 KLSKKPSLRE---AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + P+ E A L TL++HP + ++ + + ++ +L L + Sbjct: 352 RTPRVPTAVEPPMQAALRTLLHHPELAEKV-ENASHFAAEDQSNAQLLVALIEARQKNPN 410 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 ++ R G LL+ L + W + +L+ +R R L Sbjct: 411 LRSLQLIARWHGTEQGRLLRALAEKE-----WLIEADNLEQQFFDTIT-SLSARQRERSL 464 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + E +A L E+ + Sbjct: 465 EHLISKARQ----------TELSAEEKIQLRELLNR 490 >gi|148653372|ref|YP_001280465.1| DNA primase [Psychrobacter sp. PRwf-1] gi|148572456|gb|ABQ94515.1| DNA primase [Psychrobacter sp. PRwf-1] Length = 705 Score = 171 bits (433), Expect = 3e-40, Method: Composition-based stats. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P + L + +IG++ R ++ CPFH EKTPSF+ N K Sbjct: 1 MSIPNHILDQLNSQADLVGIIGKHTTLKRAGK-----EFKGNCPFHGEKTPSFYVNPQKN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 Y CF C V G+ + FL +F+E+VQ L+ G+ +P D K Sbjct: 56 VYNCFGCGVSGNAIKFLREYENQTFMEAVQELSRQTGIEIPKEDNKD 102 Score = 143 bits (360), Expect = 9e-32, Method: Composition-based stats. Identities = 120/521 (23%), Positives = 213/521 (40%), Gaps = 59/521 (11%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +L L+ F+ ++L+N Y ERG+ I F LGYAP L E Q Sbjct: 211 NLYELLIQIGQFYQNNLRNNL--HAMAYFTERGLTDATINEFGLGYAPTGWQHLEEAFPQ 268 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + ++A L+ YD R+R+IFPIR ++G++I F GR L KY+N Sbjct: 269 ----DIAGLKALGLVRQSEKGRDYDLLRDRVIFPIRDNQGRIIGFAGRALDNEVKPKYIN 324 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S ++ +FHK LY ++ + ++ ++VEGYMDV++L QAG+ V Sbjct: 325 SSDSPVFHKQHVLYGYYESRQ------------QRANDWLVVEGYMDVIALYQAGIYGAV 372 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 +S+GT++ E Q+ L +++P + LCFDGD G +AA++ +++ L L + F+ L Sbjct: 373 ASMGTSINETQIARLLQMNPTLTLCFDGDSAGQKAAWRTLEVALPVLSDDKELRFLTLPG 432 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 G DPD++I G A + I ++PL ++ +E + + +A+L ++ N++ Sbjct: 433 GHDPDTYIAMQGVEAMREHIKRAMPLSQYIFAYLSERYDLSLAEGKAKLMSQVRQLTNNL 492 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 +Y + I +L GR +KN+ H + S ++ Sbjct: 493 PKGSSFKYLLNNDIYQKLG-------------GRKNQKNSAHDVLLDFDSDMTVSRQLEL 539 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELAD---------------IRYDNNELQKLW 519 L P L + L + + E + +++ L +L Sbjct: 540 CLLFAPHLLAEDPIKRLWEVSGVADIKIPEKSIGTQQAPVATPPLPSWEDFNSPSLTQLT 599 Query: 520 SFLFS---DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + E I L L + + ++VD Sbjct: 600 QTIIGLTPYLPEDTNAAAHFILANLPNGLQQNLATRWHPFWSNLNQRGIIDVDDLVDDLL 659 Query: 577 GYQQALALYKRF---------RLLSRQKEEIEKQIAQVTAK 608 AL K+ L+RQ++ + + + A+ Sbjct: 660 TQLMLQALSKQMSQSPGLVITSHLNRQRQTLMNWLKKQQAE 700 >gi|13508092|ref|NP_110041.1| DNA primase [Mycoplasma pneumoniae M129] gi|2494145|sp|P75426|PRIM_MYCPN RecName: Full=DNA primase gi|1674174|gb|AAB96131.1| DNA primase [Mycoplasma pneumoniae M129] Length = 620 Score = 171 bits (432), Expect = 4e-40, Method: Composition-based stats. Identities = 110/649 (16%), Positives = 220/649 (33%), Gaps = 62/649 (9%) Query: 4 PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + L I I+ ++ Y + ++ D+ A CPFH ++ PS + +K + Sbjct: 3 SPTSLDQLKQQIKIAPIVEHYAIKLKKKGK-----DFVALCPFHADQNPSMTVSVAKNIF 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLI 121 CFSC V GD ++F+ + + ++ + +I + V+ +++ + L Sbjct: 58 KCFSCQVGGDGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFYLKEVDPKLKRYWDLH 117 Query: 122 EVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 D++ LK + + L + + +Y L L Sbjct: 118 SALVDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWI 177 Query: 179 S--------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 S + + N T Y F++R++ PI +G + F GR L K E Sbjct: 178 SPAIEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEK 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 +KY NS E F K + L+NF K + LVEGY DV +L AG Sbjct: 238 IKYKNSAEHQWFKKSELLFNFHRIDKNTLK-------------LYLVEGYFDVFALTSAG 284 Query: 291 VQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 + +VV +G AL+E + + +VL D D G A +K L+ G Sbjct: 285 IGDVVGLMGLALSESHIIAFQQQLKALETVVLALDNDTAGHDATFK---LLQELNAHGII 341 Query: 348 VNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 V V ++ +D D G A + + + + Sbjct: 342 VEVVDWNQAAYKDWDELFLAEGSDAVK-----AKTHRVLNLVEYLVAYFKTKGFDERITV 396 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + + I + +S+ + +LQQL Q E +K ++ + Sbjct: 397 NKVIDIIAQNQKVTADTSFSRFLCQKLQQLLQYSDVETLFTQLQQQKLKVKVNKTTTFTQ 456 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + E+ + + L + + + + + +F+ Sbjct: 457 RAPIYESVVGVVDNSFRNESQPVAI----------TKEFLVENNWKETKERVFHAEIFAY 506 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQAL 582 L ++ L + EL L + D L+ A + + ++ Sbjct: 507 V-----LLDKQFLVELKQSDLDELFASLQTPLFDVALFIDKARLYWAKVQEPDWAVFNSI 561 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + +I++ + + E + ++ ++ ++ Sbjct: 562 LGEQQAMFPTTFLAQIKEFFLNKSLSYDPEDYEEDLQFFRQLIVKQKEL 610 >gi|301633210|gb|ADK86764.1| DNA primase [Mycoplasma pneumoniae FH] Length = 620 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 109/649 (16%), Positives = 220/649 (33%), Gaps = 62/649 (9%) Query: 4 PRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + L I I+ ++ Y + ++ D+ A CPFH ++ PS + +K + Sbjct: 3 SPTSLDQLKQQIKIAPIVEHYAIKLKKKGK-----DFVALCPFHADQNPSMTVSVAKNIF 57 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLI 121 CFSC V G+ ++F+ + + ++ + +I + V+ +++ + L Sbjct: 58 KCFSCQVGGNGIAFIQKIDQVDWKTALNKALSILNLDSQYAVNFHLKEVDPKLKRYWDLH 117 Query: 122 EVATDFFHHSLK---NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 D++ LK + + L + + +Y L L Sbjct: 118 SALVDYYQTRLKLEPKEQGLTYLTETRKLSPQVIERFQLGLAFTLEDQYFLPSLLNYPWI 177 Query: 179 S--------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 S + + N T Y F++R++ PI +G + F GR L K E Sbjct: 178 SPAIEKAELCFATEKFPEALGFFNQQTHYATFKSRIMIPIHDLKGNPVGFSGRALQKTEK 237 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 +KY NS E F K + L+NF K + LVEGY DV +L AG Sbjct: 238 IKYKNSAEHQWFKKSELLFNFHRIDKNTLK-------------LYLVEGYFDVFALTSAG 284 Query: 291 VQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 + +VV +G AL+E + + +VL D D G A +K L+ G Sbjct: 285 IGDVVGLMGLALSESHIIAFQQQLKALETVVLALDNDTAGHDATFK---LLQELNAHGII 341 Query: 348 VNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 V V ++ +D D G A + + + + Sbjct: 342 VEVVDWNQAAYKDWDELFLAEGSDAVK-----AKTHRVLNLVEYLVAYFKTKGFDERITV 396 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + + I + +S+ + +LQQL Q E +K ++ + Sbjct: 397 NKVIDIIAQNQKVTADTSFSRFLCQKLQQLLQYSDVETLFTQLQQQKLKVKVNKTTTFTQ 456 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + E+ + + L + + + + + +F+ Sbjct: 457 RAPIYESVVGVVDNSFRNESQPVAI----------TKEFLVENNWKETKERVFHAEIFAY 506 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQAL 582 L ++ L + EL L + D L+ A + + ++ Sbjct: 507 V-----LLDKQFLVELKQSDLDELFASLQTPLFDVALFIDKARLYWAKVQEPDWAVFNSI 561 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + +I++ + + E + ++ ++ ++ Sbjct: 562 LGEQQAMFPTTFLAQIKEFFLNKSLSYDPEDYEEDLQFFRQLIVKQKEL 610 >gi|259909795|ref|YP_002650151.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965417|emb|CAX56949.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 926 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 117/681 (17%), Positives = 212/681 (31%), Gaps = 93/681 (13%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFH+EKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHEEKTPSMVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+HH+L NA + L Y R + F+ G+A +L L Sbjct: 118 AL---LERVTAFYHHTLLNAP-EALAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I + L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 171 KKLKDGAAIRSRLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGWRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++ G R + ++++ FD D G AA + L ++ Sbjct: 274 AAYGVNGFTDDHRRAFAQHEIKQVLIAFDNDVAGNAAA---VRLAAELAAMQIDAFRIVF 330 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI----- 406 +G D + ++ + F L+ + P+ D + Sbjct: 331 PQGMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGV 390 Query: 407 -------------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 ++ + Q + F + S Sbjct: 391 VVERGDAGEVLISLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARS 450 Query: 448 RYWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINH 494 R + L +S + + + + E A L L+N Sbjct: 451 RGGYVRQAATELGLAEDDLRRSLGKVLLALENLAAQPQPEENAPQLTEAERAEALALLND 510 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 P + +LA L + + + + Q G L+ + Sbjct: 511 PDLSSRITGDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVL 569 Query: 555 RQVRDAGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 + + E+N+ + + + L + + E IA Sbjct: 570 NLMPEEERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA- 628 Query: 605 VTAKGEAEKTAILISILHEVH 625 + G+ E T L++ + V Sbjct: 629 --STGKDEATGNLVTKQYRVK 647 >gi|332974185|gb|EGK11119.1| DNA primase [Psychrobacter sp. 1501(2011)] Length = 782 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P + L + +IG++ R ++ CPFH EKTPSF+ N K Sbjct: 31 MSIPNHILDQLNSQADLVGIIGKHTTLKRAGK-----EFKGNCPFHGEKTPSFYVNPQKN 85 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 Y CF C V G+ +SFL +F+E+V L+ G+ +P D K + K Sbjct: 86 VYNCFGCGVGGNAISFLRDYENQTFMEAVTELSRQTGIEIPKEDNKDLRYRK 137 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 172/329 (52%), Gaps = 19/329 (5%) Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + + +L L+ ++F+ H+L+ + R Y ERG+ + IE FKLGYAP Sbjct: 245 QDNAQNAQDGNLYELLVSISEFYQHNLR--HNSRAMSYFKERGLSDNIIEEFKLGYAPTG 302 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 L + Q + + ++A L+ YD R+R+IFPIR ++G+VI F GR L Sbjct: 303 WQHLEQAFPQ----DIEGLKALGLVRQSEKGRDYDLLRDRVIFPIRDNQGRVIGFAGRAL 358 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 KY+NS ++ +FHK LY ++ + + ++ ++VEGYMDV++ Sbjct: 359 DNEVKPKYINSSDSPVFHKQHVLYGYYESRQH------------KANDWLVVEGYMDVIA 406 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L QAG+ V+S+GTA+ E Q+ L +L+P + LCFDGD G +AA++ +++ L L Sbjct: 407 LYQAGIYGAVASMGTAINESQISRLLQLNPTLTLCFDGDSAGQKAAWRTLEVALPVLSDD 466 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + F+ L G DPD++I G A + I +++PL ++ +E + + +A+L Sbjct: 467 KELRFLTLPGGHDPDTYIALQGVDAMREQIKKAMPLSQYIFAYLSERYDLSMAEGKAKLM 526 Query: 406 IHLKNCINHIK-DQKLRYYYSQAIRDRLQ 433 ++ N++ +Y + I +L Sbjct: 527 SQVRQLTNNLPKGSSFKYLLNNDIYQKLG 555 >gi|253988430|ref|YP_003039786.1| DNA primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988436|ref|YP_003039792.1| DNA primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253990474|ref|YP_003041830.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638958|emb|CAR67573.1| dnag primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779880|emb|CAQ83041.1| putative DNA primase-like protein [Photorhabdus asymbiotica] gi|253779886|emb|CAQ83047.1| putative DNA primase-like protein [Photorhabdus asymbiotica] gi|253781924|emb|CAQ85088.1| dnag primase-like [Photorhabdus asymbiotica] Length = 922 Score = 170 bits (431), Expect = 5e-40, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 154/392 (39%), Gaps = 39/392 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + + ++ Q +R DY CPFH EKTPS + +K Sbjct: 3 RIPETELQHLKAAVSLVAVVEQQGRQLFKRGK-----DYVLLCPFHQEKTPSMVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L ++ G S +V++L I G VPL D + Sbjct: 58 LYHCFGCDAGGSVLDWVMKTKGLSLRRAVEQLRGILGDNPSVVPLVQPDEPAMLADDDAG 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+ F+HH+L NA + L Y R + FKLG+A +L L Sbjct: 118 R-QALLSRVVGFYHHTLLNAP-EALAYLEKRRLNHPELVAQFKLGFA---NRTLAYRLPI 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K I A L G + ++ F L+ P+ GQ+ GR ++ Sbjct: 173 KAVQAGAQIRARLRAVGLMRDSGHEHFTGSLVIPVIDPNGQIREIYGRKITDRLRSGT-- 230 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY GA + + + SS +IL E +D LS AG ++V Sbjct: 231 ---------PLHLY-LPGAHDGI----WNEPALISSGAVILCESLIDALSFWVAGHRHVT 276 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++ G ++R ++ ++++ +D D G AA + L G V V+ Sbjct: 277 AAYGVNGFTDEMRQAFQRYGVKQVLIAYDNDPAGNEAA---VKLAAELTAVGITVFRVVF 333 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + AF L+ ++P+ + Sbjct: 334 PEGMDANGYLCQVAEPERAFGLLLDSAVPMQE 365 >gi|261885074|ref|ZP_06009113.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 150 Score = 170 bits (430), Expect = 7e-40, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 12/156 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++L + I++++G Y+ R + D+ CPFH++K PS + SKG ++CF Sbjct: 5 SSIENLKNIVDIADVVGSYLPLKRSGS-----DFVCVCPFHNDKNPSMRVSPSKGIFHCF 59 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 SC GD + F+ S+ E++++LA + L D K E + ++E Sbjct: 60 SCKAGGDSIKFIMDYEKLSYPEAIEKLANMYNFTLNYTDNKNEHHYDKK-----ILENLN 114 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161 ++ L + YL RGI+ I+ +L + Sbjct: 115 LYYKSMLYKN--REAINYLYSRGINDAMIKKCELCW 148 >gi|251771802|gb|EES52377.1| DNA primase [Leptospirillum ferrodiazotrophum] Length = 189 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 7/142 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++++ + + + +YV+ +R + CPFH+EK+PSF + K YYC Sbjct: 3 DEWVESVRRATDLVEVASRYVNLRKRGQK-----WVGLCPFHEEKSPSFQIDPDKQLYYC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F CH GD + L SF E V+ LA AG+PLP ++ + + L + + +A Sbjct: 58 FGCHAGGDVFRLVEKLDHKSFGEVVRSLAQEAGIPLPER--GSAEERERRERLRKALLLA 115 Query: 125 TDFFHHSLKNARDKRLHYYLDE 146 + + +L + + + YL E Sbjct: 116 QELYRKALASPQGEPARRYLRE 137 >gi|226327184|ref|ZP_03802702.1| hypothetical protein PROPEN_01049 [Proteus penneri ATCC 35198] gi|225204402|gb|EEG86756.1| hypothetical protein PROPEN_01049 [Proteus penneri ATCC 35198] Length = 263 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 90/269 (33%), Positives = 151/269 (56%), Gaps = 14/269 (5%) Query: 76 FLSALLGCSFIESVQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLK 133 FL F+E+++ LAA+ G+ +P + I+ +L +++E ++ ++L Sbjct: 7 FLMNYDRLDFVETIEELAAMHGLEVPYESGTGSSPIERHIRQNLYQVMERLNQYYSNALN 66 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 + YL RG+ I F +G+ P ++ + Q + ++EAG++I + Sbjct: 67 KPDAQEARNYLAHRGLSEEIITRFSIGFVPTGWDNVLKRFGQDADNRALLLEAGMVI-TN 125 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFG 253 ++ +YDRFR R++FPIR RG+VIAFGGR L + KYLNSPET +FHKG+ LY + Sbjct: 126 DNGRTYDRFRQRVMFPIRDRRGRVIAFGGRVL-GDDLPKYLNSPETEIFHKGRQLYGLYE 184 Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313 A N+ + +++VEGYMDV++L Q G+ V+SLGT+ T ++LL++ Sbjct: 185 AQQS----------NNNVTKLLVVEGYMDVVALAQFGIDYAVASLGTSTTAEHIQLLFRT 234 Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 + I+ C+DGD G AA++A++ L Sbjct: 235 TDNIICCYDGDRAGRDAAWRALETALPFF 263 >gi|47092745|ref|ZP_00230531.1| DNA primase [Listeria monocytogenes str. 4b H7858] gi|47018933|gb|EAL09680.1| DNA primase [Listeria monocytogenes str. 4b H7858] Length = 420 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 106/427 (24%), Positives = 187/427 (43%), Gaps = 27/427 (6%) Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 + + F++G+AP+ ++ L ++G + AGLL + D+ DRFRNR++F Sbjct: 1 MSEQMMTTFQIGFAPNHHATITAFLEKRGMDLQLAGRAGLLSERDDG-QMVDRFRNRIMF 59 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 PI + RGQ+IAF GR + + KYLNSPET +F+K + L++F A ++K Sbjct: 60 PITNDRGQIIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQ------- 112 Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328 I L+EG+MDV+S +AGVQN V+S+GT+LTE L+ +L+ R ++C+DGD G+ Sbjct: 113 ---EEITLMEGFMDVISAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGI 169 Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWK 387 AAYKA L++ + L G+DPD FIR G F++ + + Sbjct: 170 EAAYKAGTLLVERNRLDV--FVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIH 227 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 R+ ++ I + R Y + + D + + + Sbjct: 228 YLRRERNLQNETDQIGYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSL 287 Query: 448 RYWKKNARHRDQKGPS-------------QRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 + +K+ + P ++ S + + E L+ ++ Sbjct: 288 KNSQKSRQMASYNEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMES 347 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 Q L D + ++ + L+++L F E P + + + L+ L+ Sbjct: 348 RDNFLLIKQLLGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLE 407 Query: 555 RQVRDAG 561 + Sbjct: 408 MVISPDE 414 >gi|259909786|ref|YP_002650142.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965408|emb|CAX56940.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 897 Score = 169 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 106/607 (17%), Positives = 193/607 (31%), Gaps = 75/607 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFH+EKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHEEKTPSMVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+E T F+H +L NA + + Y R + FK G+A +L L Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EAIAYLEKRRLHHPELVAAFKPGFA---NRTLAYRLPP 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGWRNVT 275 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++ G R + ++++ FD D G AA + L + ++ Sbjct: 276 AAYGVNGFTDDHRRAFAQHEIKQVLIAFDNDAAGNGAA---VRLAAELVQMQIDTFRIVF 332 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELE 405 G D + ++ + F L+ + P+ D M+ + + D +E Sbjct: 333 PAGMDANGYLCRVAEPEREFGLLVESAQPMRDAVTVPEMVVPETLPALAASPSDPGVVVE 392 Query: 406 I---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 ++ + Q + F + S R Sbjct: 393 RGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSRGG 452 Query: 451 KKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPAI 497 + L +S + + + + +E A L L+ P + Sbjct: 453 YVRQAAAELGLAEDDLRRSLGKVLLALENLTAQPQPEESAPQLTEQERAAALALLRCPDL 512 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +LA L + + + + Q G L+ + + Sbjct: 513 SGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLM 571 Query: 558 RDAGLWS 564 + Sbjct: 572 PEEERMQ 578 >gi|293363642|ref|ZP_06610394.1| CHC2 zinc finger domain protein [Mycoplasma alligatoris A21JP2] gi|292552798|gb|EFF41556.1| CHC2 zinc finger domain protein [Mycoplasma alligatoris A21JP2] Length = 249 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 70/254 (27%), Positives = 120/254 (47%), Gaps = 20/254 (7%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M P I +++ I LI +++ ++ D+ CPFH + TPS + K Sbjct: 1 MKNIPEHIINEIIESTDIVALISSFLNLSKKGK-----DFVGLCPFHGDNTPSMSISSEK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQT 115 + CFSC+V G+ L+FL ++E+++ LA G I K K Q Sbjct: 56 QIFKCFSCNVGGNSLNFLMKYKNFKYLEAIKYLADFNGHSFDFSSYETAKNIPKYTKNQE 115 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +I ++ A + +S+ +D + YL +R +D++ ++ F +G++P+ +++ Sbjct: 116 LIIETLKAANLLYKNSVYENKDAQE--YLKKRMLDTNILDYFNIGFSPE------IGIKE 167 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K +E L G ++ + R R+ F I ++ G +IAF GR L KY+N Sbjct: 168 KLVNEFNFKNFELNKAGIINSEFNEILRKRITFAITNNLGDIIAFSGRAL-GDLKPKYIN 226 Query: 236 SPETILFHKGKNLY 249 SPET LF K LY Sbjct: 227 SPETELFKK-MLLY 239 >gi|253990480|ref|YP_003041836.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638951|emb|CAR67566.1| dnag primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781930|emb|CAQ85094.1| dnag primase-like protein [Photorhabdus asymbiotica] Length = 927 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 147/392 (37%), Gaps = 43/392 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P ++ L + + ++ Q RK DY CPFH EKTPS + K Sbjct: 31 RIPEAELQHLKAAVSLVAVVEQ----QGRKLVKRSKDYVLLCPFHQEKTPSMVLSPEKNL 86 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--------VPLPVVDPKIEKKEKI 113 Y+CF C+ G L ++ S + +RL A+ G V E + Sbjct: 87 YHCFGCNEGGSVLDWVMKTESLSLRHAAERLRALLGENPAVKPLVAPSEPALLAEDEAGR 146 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 Q L R++E F+HH+L NA + Y R + F+LG+A +L L Sbjct: 147 QALLHRVVE----FYHHTLLNAP-EMQAYLTQRRLNHPELVAHFRLGFA---NRTLGYRL 198 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K I A L G + ++ F L+ P+ + +GQ+ GR + Sbjct: 199 PSKKLKPGAEIRARLRAVGLMRESGHEHFTGSLVVPVINPQGQIQEIYGRKIGDHLRAGT 258 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +LY L + + ++ +I+ E +D +S G +N Sbjct: 259 -----------PSHLY-----LPGAHGGVWNETALMAAKSLIVCESLIDAMSFWVTGHRN 302 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V ++ G ++ ++++ FD D G AA K + L+ G V Sbjct: 303 VTAAYGVNGVTADHWQAFERHGIKQVLIAFDNDSAGNEAAVKLAE---ALLVRGITPLRV 359 Query: 352 LLSRGEDPDSFI--RCYGKTAFEKLIVESLPL 381 + D + ++ + AF L+ + P+ Sbjct: 360 MFPPEMDANDYLCQMAEPEAAFALLLESATPM 391 >gi|326570964|gb|EGE20988.1| DNA primase [Moraxella catarrhalis BC7] Length = 695 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|296113274|ref|YP_003627212.1| DNA primase [Moraxella catarrhalis RH4] gi|295920968|gb|ADG61319.1| DNA primase [Moraxella catarrhalis RH4] gi|326565268|gb|EGE15453.1| DNA primase [Moraxella catarrhalis 12P80B1] gi|326575840|gb|EGE25763.1| DNA primase [Moraxella catarrhalis CO72] Length = 695 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|326576923|gb|EGE26829.1| DNA primase [Moraxella catarrhalis O35E] Length = 695 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 133 bits (333), Expect = 1e-28, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEKTIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|326560263|gb|EGE10651.1| DNA primase [Moraxella catarrhalis 7169] gi|326562907|gb|EGE13194.1| DNA primase [Moraxella catarrhalis 46P47B1] gi|326566419|gb|EGE16569.1| DNA primase [Moraxella catarrhalis BC1] Length = 695 Score = 168 bits (424), Expect = 3e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|326570227|gb|EGE20272.1| DNA primase [Moraxella catarrhalis BC8] Length = 695 Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|326563652|gb|EGE13904.1| DNA primase [Moraxella catarrhalis 103P14B1] gi|326573260|gb|EGE23228.1| DNA primase [Moraxella catarrhalis 101P30B1] Length = 695 Score = 168 bits (424), Expect = 4e-39, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P I+ L + +IG++ +Y CCPFH EKTPSF+ N Sbjct: 1 MNIPESIIEQLNSQADLVGIIGKHTTLKAAGR-----EYKGCCPFHGEKTPSFYVNPETN 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 YYCF CH KG+ ++FL SFIESV+ L+ G+ LP D Sbjct: 56 LYYCFGCHAKGNPITFLKEFERMSFIESVKFLSEQTGIELPKDDTDQ 102 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 103/432 (23%), Positives = 185/432 (42%), Gaps = 34/432 (7%) Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 DL L+ D++ L N Y +RG+ I+ F LGYAPD L + Sbjct: 191 DLYSLLTAVHDYYQLMLNNF--TFAKQYFLDRGLSEETIQTFGLGYAPDGWQHLEQVF-- 246 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + ++ ++ R+R+IFPIR ++G+V+ F GR+L E+ KY+N Sbjct: 247 PQDIEGLKILGLVRESSKSNGRTFCLLRHRVIFPIRDNQGRVVGFAGRSL-GDENPKYIN 305 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 S E+ +F K + LY + + K +LVEGYMDV++L QAG+ V Sbjct: 306 SSESPVFQKQQILYGLYESRKQKAK------------NYLLVEGYMDVIALYQAGIYGAV 353 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + +GTA E Q+ L + + ++ LCFDGD+ G +AA++ +++ L G + F+ L Sbjct: 354 APMGTAANEKQIERLLRYNNQLTLCFDGDNAGQKAAWRTLEIAAPILNDGRELKFLTLPD 413 Query: 356 GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI 415 DPD++++ +G I ++ L D ++ P+ +A+ L+ + Sbjct: 414 HHDPDTYLKSHGAAVMRDAIEGAVSLSDYIYGVLASQYDLTRPESKAQAMATLRQLTELL 473 Query: 416 K-DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 L+++ + I +L+ + ++ + ++ + L+ + ++ Sbjct: 474 PKGSSLKWWLNSDIYQKLKAIGREGQFSPKVELINYNRHDAADAITEIALHLIHTPILLK 533 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNEL---QKLWSFLFSDFVE 528 L +I H + Q L +L S L + + Sbjct: 534 SDP----------LAFVIEHSGMAQAHLPLSNHLERQEISLPKLPNWASFKSPLLDEIIA 583 Query: 529 QKYFLPEEIHQR 540 LP EI Q Sbjct: 584 TVSTLPNEILQD 595 >gi|253988422|ref|YP_003039778.1| DNA primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988444|ref|YP_003039800.1| DnaG primase-like protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779872|emb|CAQ83033.1| putative DNA primase-like protein [Photorhabdus asymbiotica] gi|253779894|emb|CAQ83055.1| dnag primase-like protein [Photorhabdus asymbiotica] Length = 899 Score = 167 bits (423), Expect = 4e-39, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 147/392 (37%), Gaps = 43/392 (10%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P ++ L + + ++ Q RK DY CPFH EKTPS + K Sbjct: 3 RIPEAELQHLKAAVSLVAVVEQ----QGRKLVKRSKDYVLLCPFHQEKTPSMVLSPEKNL 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG--------VPLPVVDPKIEKKEKI 113 Y+CF C+ G L ++ S + +RL A+ G V E + Sbjct: 59 YHCFGCNEGGSVLDWVMKTESLSLRHAAERLRALLGENPAVKPLVAPSEPALLAEDEAGR 118 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 Q L R++E F+HH+L NA + Y R + F+LG+A +L L Sbjct: 119 QALLHRVVE----FYHHTLLNAP-EMQAYLTQRRLNHPELVAHFRLGFA---NRTLGYRL 170 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K I A L G + ++ F L+ P+ + +GQ+ GR + Sbjct: 171 PSKKLKPGAEIRARLRAVGLMRESGHEHFTGSLVVPVINPQGQIQEIYGRKIGDHLRAGT 230 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +LY L + + ++ +I+ E +D +S G +N Sbjct: 231 -----------PSHLY-----LPGAHGGVWNETALMAAKSLIVCESLIDAMSFWVTGHRN 274 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V ++ G ++ ++++ FD D G AA K + L+ G V Sbjct: 275 VTAAYGVNGVTADHWQAFERHGIKQVLIAFDNDSAGNEAAVKLAE---ALLVRGITPLRV 331 Query: 352 LLSRGEDPDSFI--RCYGKTAFEKLIVESLPL 381 + D + ++ + AF L+ + P+ Sbjct: 332 MFPPEMDANDYLCQMAEPEAAFALLLESATPM 363 >gi|229093362|ref|ZP_04224469.1| DNA primase [Bacillus cereus Rock3-42] gi|228690018|gb|EEL43819.1| DNA primase [Bacillus cereus Rock3-42] Length = 391 Score = 167 bits (422), Expect = 5e-39, Method: Composition-based stats. Identities = 97/421 (23%), Positives = 170/421 (40%), Gaps = 31/421 (7%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 +FPI + +G+VIAF GR L ++ KYLNSPET +FHK K LYNF A +++K Sbjct: 1 MFPIYTLQGKVIAFSGRAL-GDDTPKYLNSPETPIFHKSKLLYNFHQARPFIRK------ 53 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326 ++L EGY DVL+ ++GV+ V+++GTALTE Q +LL + +VLC+DGD Sbjct: 54 ----RGQVVLFEGYADVLAAVKSGVEEAVATMGTALTEEQAKLLRRNVETVVLCYDGDKA 109 Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386 G A KA L L G +V L DPD +++ YG TAFE L+ S+ V Sbjct: 110 GREATMKAGQL---LLNVGCQVKVTSLPDKLDPDEYVQQYGTTAFENLVKSSISFVGFKI 166 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 ++ + E + ++ ++D Y +++ + + + Y Sbjct: 167 NYLRLGKNLQDESGKEEYVKSVLKELSLLQDAMQAESYLKSLSQEFSYSMETLLNQLHQY 226 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 + K + Q +++Q+ E ++ ++ P + + Sbjct: 227 RKEQKVQQKQVKQVSKPSQIVQT----KPKLTGFERAEREIIYHMLQSPEVAVRMESHIE 282 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + E + + L++ + + L + ++ + + Sbjct: 283 --DFHTEEHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------STDEFIN 334 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 E Q R +K EI +I Q+ E ++ L Sbjct: 335 PEYTEE-----VLQGHLETLRRHQEKLEKMEIIFKIKQMEKTDPVEAAKYYVAYLQNQKA 389 Query: 627 Q 627 + Sbjct: 390 R 390 >gi|325973629|ref|YP_004250693.1| DNA primase [Mycoplasma suis str. Illinois] gi|325990081|ref|YP_004249780.1| DNA primase [Mycoplasma suis KI3806] gi|323575166|emb|CBZ40828.1| DNA primase [Mycoplasma suis] gi|323652231|gb|ADX98313.1| DNA primase [Mycoplasma suis str. Illinois] Length = 649 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 116/610 (19%), Positives = 217/610 (35%), Gaps = 49/610 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + ++ + +I Y+ ++R N +WA CPFHD+ S ++ K + C Sbjct: 4 KSYLD--RKKYKVKEVIQNYLSLEKRGRN-----FWAICPFHDDTRASLSVSEEKNIFKC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIE 122 FSC V GD +SF+ F E+V + + P+ + K + LI+ Sbjct: 57 FSCGVTGDAISFVMKKENIPFNEAVFKAHTLLKFPIEQLSSIKFNSKDYLFKQQLIKFNN 116 Query: 123 VATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++FF +SL + YL +ER + I+ FK+G++P + + + SEE Sbjct: 117 FVSEFFINSLNSEEGGEALQYLKEERKLSDFLIQKFKIGFSPAGEKLMNSIEQIRKISEE 176 Query: 182 KIIEAG--------LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SV 231 + S + F+NR++FPI S ++I F R L Sbjct: 177 FKFISDEFLLKTGIFSKSSGTSEKIFPIFQNRIVFPIFSQNQEIIGFTSRRLGNSNLSEA 236 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 KY++S ET+LF K LYN R + SFI L EG D+LS Sbjct: 237 KYIHSRETLLFKKANLLYNLPE-----------INRVSEDSFIYLFEGIFDLLSFQLISP 285 Query: 292 QNVV-SSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 +++ + LG+ +++ RLL S ++V+ D D G AA K +L + + Sbjct: 286 ESICFALLGSEMSDNGFRLLTKLPSKKLVIIMDNDQAGRNAALKLFQKMLK-YELNSHIL 344 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + +D LI P+ + W + + ++ I + Sbjct: 345 PIDYGNNKDLSELYCSGS------LIQLPKPVDYIEWIQGNWRDLWKKEEKYITDIISVN 398 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 ++ + D + + + + + + Sbjct: 399 QIVHFLLDGLFQRDQRTQKIFLFSDIKYDFAFLQLSRIFSLYDSIEKTQFESEIIERAKQ 458 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ K +E ++ I + + E K+ + Sbjct: 459 KYIEAINVKAILPQEDSI------EIEIASLRRELSTPKDLTG-EFSKIVEIIQKLRESN 511 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + I Q+L + L + + + +V ++ L + K Sbjct: 512 R--DLQLISQKLSDWETPFLFQYFENYQLGFSEKEIPFFLELKEVIANFRSDLIVQKTKY 569 Query: 590 LLSRQKEEIE 599 L ++ EEIE Sbjct: 570 LSLQEGEEIE 579 >gi|296162694|ref|ZP_06845480.1| zinc finger CHC2-family protein [Burkholderia sp. Ch1-1] gi|295887082|gb|EFG66914.1| zinc finger CHC2-family protein [Burkholderia sp. Ch1-1] Length = 1005 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 141/380 (37%), Gaps = 44/380 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + + L+ + ++ + D+ CPFH++ TPS SK Sbjct: 3 RIPDAELERLKAEVSVEQLVRAHGIELVKSGR-----DWRGRCPFHEDGTPSLVVTPSKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQR-------LAAIAGVPLPVVDPKI-EKKEK 112 ++CF C + G + + G SF +V+ LAA AG + E Sbjct: 58 LWHCFGCGLGGGPVDWAMKANGISFRHAVELLREGIPALAAKAG---ERTTVRALESPVS 114 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 ++ D L++ D++H SLK++ YL++RGI + + + +L Sbjct: 115 VEVDDAALLDQVVDYYHQSLKSS--PEALAYLEKRGIAAAV----EPFRLGFANRTLGLR 168 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 L +K + I L G + ++ ++F R G V GR + + ++ Sbjct: 169 LPEKNRVAGEAIRTRLQRIGVIRESGHEHLNGCIVFGWRDEAGHVAGLYGRKIVENQAR- 227 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 + K+LY L + + +I+ E +D L+ AG Sbjct: 228 ----------NLPKHLY-----LPGPHRGVFNADGVRGQREVIVCESVIDALTFWCAGCT 272 Query: 293 NVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 NV ++ G L++ R+++ +D D G A K L + G Sbjct: 273 NVTAAFGADGFTEDHLALFRAQGVERVIIAYDRDAAGDAGAQK---LAQRLTVEGIGCYR 329 Query: 351 VLLSRGEDPDSFIRCYGKTA 370 V G D + + A Sbjct: 330 VQFPHGLDANEYALKVTPAA 349 >gi|219109991|ref|XP_002176748.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411283|gb|EEC51211.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 1192 Score = 165 bits (417), Expect = 2e-38, Method: Composition-based stats. Identities = 128/612 (20%), Positives = 217/612 (35%), Gaps = 118/612 (19%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + ++ I I ++I Y + DR + + A CPFHD++ PS + ++ Sbjct: 79 RIDFNQLSEMKESIDIISVIESY-NLDRFERKSDDRA-TALCPFHDDENPSLSIDRTRKM 136 Query: 62 YYCFSCHVKGDHLSFLSAL-----LGCSFIESVQRLAAIAG---VP-----LPVVDPKIE 108 Y CFSC GD F+ SF E+V ++ G V + P++ Sbjct: 137 YKCFSCGAGGDAFRFVREYSKLKGQQMSFYEAVLEVSTKFGDGHVEGIGKSVQAESPELR 196 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 ++++ L A + L YL +RG+ A+ F LG+APD Y Sbjct: 197 QRKER--TLYANAVAAAFY-ATCLTKPSAGGARQYLRQRGLTPEAVRTFALGFAPDFYYG 253 Query: 169 LREHLRQKGFSEEKIIEAGLL--------------------------------------- 189 ++ G L Sbjct: 254 ANRSRKKWGEDSLVQHMQSLNFTVDELLEAGLATETKTTEEPVQKFSFGEDPLLEGAFTS 313 Query: 190 ---IDGDNSATSYDRFRNRLIFPIRSSRG-QVIAFGGRTLSK-------GESVKYLNSPE 238 + DRFR R++ PI G V+ FGGR L KYLNSPE Sbjct: 314 KPTSTSCPFDSIIDRFRFRIVVPIMDKAGANVLGFGGRILPSIVEMPNAYNPPKYLNSPE 373 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 +++F K L+ A + K +K ++ +ILVEGYMDV+SL GV+NVV+++ Sbjct: 374 SLVFKKKCILFGHSLAKETV-KQPKKSEHEQLANTLILVEGYMDVMSLWTIGVRNVVAAM 432 Query: 299 GTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAID---LVLCHLIPGNRVNFVLL 353 GTA+T QL + + +VLC D D GL A + L G ++ LL Sbjct: 433 GTAVTMDQLAIAAKSIRNGNLVLCLDNDSAGLLALERLCSNGLLSRIVSKYGTEISIALL 492 Query: 354 SRG-EDPDSFIRCYGKTAF--------EKLIVESLPLVDMLWKRETENR----------- 393 G +DP FI + A +++ +S +D ++ E+ Sbjct: 493 PSGIKDPGEFIESKAEAASTTIADAFQTEVLSKSQDWIDWYLQQLLESYDSKAGRGRAGS 552 Query: 394 --------------SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 + D + ++ + S A++++L+ Sbjct: 553 FGDVFERVANFLANNMGPADRTKHACEIAVSLAKTTANEMGSDHASSAVQNQLESDLIDL 612 Query: 440 ITEHSGYGRYWKKNA----------RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 + + R ++ +D R S + + + + LL Sbjct: 613 SSRLAEKKRAIQRRTELVNSDGNVGSQKDALFALTRGSGPSADESDKLSSSASKGSDLLS 672 Query: 490 TLINHPAILQEQ 501 +N +L + Sbjct: 673 VALNDVDLLDKF 684 >gi|218671696|ref|ZP_03521365.1| DNA primase [Rhizobium etli GR56] Length = 287 Score = 163 bits (412), Expect = 8e-38, Method: Composition-based stats. Identities = 139/282 (49%), Positives = 180/282 (63%), Gaps = 2/282 (0%) Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 P + L KG ++E+I GL++ +N SYDRFR+R++FPI SSR +VI Sbjct: 7 ASLCPRQPQCAQGILAGKGVTKEQIEACGLVV-HENVPVSYDRFRDRIMFPILSSREKVI 65 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS-SFIILV 277 AFGGR +S KYLNS ET LFHKG LYNF A +Q R D + +++ II V Sbjct: 66 AFGGRAMSADAPAKYLNSNETELFHKGNVLYNFARARRAIQGPGRGDQQDDNASGTIIAV 125 Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337 EGYMDV++L QAGV+N V+ LGTALTE QL LLWK+ P+ VLCFDGD G+RAA +A +L Sbjct: 126 EGYMDVIALHQAGVENAVAPLGTALTENQLELLWKMVPQPVLCFDGDGAGIRAANRAAEL 185 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 L HL PG V F LL G+DPD +R G+ F+K++ ++ PL +MLW RE F+T Sbjct: 186 ALPHLKPGRSVRFALLPDGKDPDDLVRDEGRAPFDKVMSQAKPLSEMLWSREINTGKFDT 245 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 P+ RAELE LK + I D+ +R +Y Q IRDRL FQ Sbjct: 246 PEARAELEARLKQLVAVIADENVRRHYQQDIRDRLNAFFQPQ 287 >gi|259909811|ref|YP_002650167.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965433|emb|CAX56965.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 920 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 118/676 (17%), Positives = 206/676 (30%), Gaps = 89/676 (13%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 3 RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + + Y R + F+ G+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + I D A+ L ++ + Sbjct: 274 AAYGVNGFTGDHRHAFARH-EIKQVLIAFDNDAAGNAAAVRLATELAAMQIDAFRIVFPQ 332 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFN--------TPDERAELE 405 G D + ++ + F L + P+ D + E D +E Sbjct: 333 GMDANGYLCRVAEPEREFGLLAGSAQPMRDAVTVPVAETVVPETLPSLAVGPSDPGVVVE 392 Query: 406 I---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 ++ + Q + F + S R Sbjct: 393 RGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRSG 452 Query: 451 KKNARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + L +S + P L EA L+N P + Sbjct: 453 YVRQAAAELGLAEDGLRRSLGKVLLALENLAAQPEAQESGPELTEAL---ALLNDPDLSS 509 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 +LA L + + + + Q G L+ + + + Sbjct: 510 RITGDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLNLMPE 568 Query: 560 AGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 E+N+ + + + L + + E IA + G Sbjct: 569 EERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STG 625 Query: 610 EAEKTAILISILHEVH 625 + + T L++ + V Sbjct: 626 KDDATGNLVTKQYRVK 641 >gi|259909802|ref|YP_002650158.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965424|emb|CAX56956.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 928 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 112/679 (16%), Positives = 203/679 (29%), Gaps = 87/679 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 3 RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EALAYLEKRRLNHPELVAQFRPGFA---NRTLAYRLPP 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + + D A+ L ++ + Sbjct: 276 AAYGVNGFTGDHRHAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELAAMQIDAFRIVFPQ 334 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------- 406 G D + ++ + F L+ + P+ D + Sbjct: 335 GMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVIV 394 Query: 407 -----------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 ++ + Q + F + S R Sbjct: 395 ERGEAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSRS 454 Query: 450 WKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPA 496 + L +S + + + E A L L+N P Sbjct: 455 GYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPEAQESGPELTEAERAEALALLNDPR 514 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + +LA L + + + + Q G L+ + Sbjct: 515 LSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGL 573 Query: 557 VRDAGLW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 + + E+N+ + + + L + + E IA Sbjct: 574 MPEEERMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA--- 630 Query: 607 AKGEAEKTAILISILHEVH 625 + G+ + T L++ + V Sbjct: 631 STGKDDATGNLVTKQYRVK 649 >gi|310764969|gb|ADP09919.1| Dnag primase-like protein [Erwinia sp. Ejp617] Length = 941 Score = 161 bits (407), Expect = 3e-37, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 148/392 (37%), Gaps = 42/392 (10%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFHDEKTPS +K Sbjct: 3 RIAEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVITPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMQSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + + Y R + F+LG+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K I + L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 171 KKLKGGAAIRSRLQALGIMRESGHEHFTGCLVVPVVDLHGQIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG++NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGLRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++ G R + ++++ FD D G AA + L + ++ Sbjct: 274 AAYGVNGFTDDHRNAFAQHGTKQVLIAFDNDATGNVAA---VRLAAELVQMQIDTFRIVF 330 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 +G D + ++ + F L+ + P+ D Sbjct: 331 PQGMDANGYLCRVAEPEREFGLLVESAQPMRD 362 >gi|282890659|ref|ZP_06299182.1| hypothetical protein pah_c022o284 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499656|gb|EFB41952.1| hypothetical protein pah_c022o284 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 147 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ ++ L I + +++ ++D R Y + CPFHDEK+ SF Y Sbjct: 4 FTKESLETLRQRIDLVDVLSAHLDLKRAGA-----SYKSLCPFHDEKSASFVVQKGDSHY 58 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF C GD + FL L SF+E+V+ LA V L V+ E K + L + Sbjct: 59 HCFGCGAHGDAIHFLMNHLKMSFLEAVEYLANRFHVHLDQVENGEETKTINKARLREALA 118 Query: 123 VATDFFHHSLKNAR 136 +A +F+H +L + Sbjct: 119 LAAEFYHFALLHTP 132 >gi|12045104|ref|NP_072915.1| DNA primase [Mycoplasma genitalium G37] gi|255660252|ref|ZP_05405661.1| DNA primase [Mycoplasma genitalium G37] gi|1346796|sp|P47492|PRIM_MYCGE RecName: Full=DNA primase gi|3844848|gb|AAC71470.1| DNA primase [Mycoplasma genitalium G37] gi|166078931|gb|ABY79549.1| DNA primase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 607 Score = 161 bits (406), Expect = 4e-37, Method: Composition-based stats. Identities = 98/648 (15%), Positives = 214/648 (33%), Gaps = 75/648 (11%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 + +LL I I+ +I Y V + A CPFHD+K PS + SK + C++ Sbjct: 8 LDELLKQIKITEIIQHYGVKIQTKGN-----SLLALCPFHDDKNPSMSISSSKNIFKCWA 62 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV-VDPKIEKKEKIQTDLIRLIEVAT 125 C+ G+ ++F+ + ++++ I G+ L + K + Q + Sbjct: 63 CNAAGNGIAFIQKHDQLDWKTALKKAIEICGIKLENWNSNLLTKVDPKQKRYWEINNALI 122 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMF-----------KLGYAPDSRYSLREHLR 174 ++ LK + YL E+ + + K RY Sbjct: 123 TYYQTRLKRETNPNGMNYLVEKRKLNKTLIEQFQLGLAFHNEDKYLCESMERYPFINPKI 182 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + + T F+N+++ PI G + F R++ +KY Sbjct: 183 KPSELYLFSKTNQQGLGFFDFNTKKATFQNQIMIPIHDFNGNPVGFSARSVDNINKLKYK 242 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 NS + F KG+ L+NF + + + +VEGY DV +L + + Sbjct: 243 NSADHEFFKKGELLFNFHR-------------LNKNLNQLFIVEGYFDVFTLTNSKFE-A 288 Query: 295 VSSLGTALTEYQLRLLWKLSPR---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+ +G AL + Q++ + +VL D D G A + I+ + + V Sbjct: 289 VALMGLALNDVQIKAIKAHFKELQTLVLALDNDASGQNAVFSLIEKLNNNNFIVEIVQ-- 346 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 +D D G + L++ + + + ++ L Sbjct: 347 WEHNYKDWDELYLNKGSEQVILQANKRQNLIEY-LVSFFKKQQLDQRVITNKIIAFLTKN 405 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + D + + + L+ +K + E + + ++ + Sbjct: 406 QTILNDHSFLIFLIKNLVKLLEYSDEKTLYETVLKHKEKLVSKFDNNRFYINTSGHAQP- 464 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 P LQ+ L ++ + +F+ Sbjct: 465 -----------------------PQELQKTTAALVQTAFEEAVNELWKPEIFAFA----- 496 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRL 590 + + L + E+ K+ + + D L+ + + ++ + L Sbjct: 497 LIDKRFLVELKQSHLDEVFKECNFNLFDVELFIEKARIYWSENQTANWVGFESVLDQNYL 556 Query: 591 LSRQKEEIEKQ---IAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633 L+ + +E + + ++T + + L + Q ++++ Sbjct: 557 LNNKARLLEIKDIFLDELTCYQANDFQNYLKTFQTL--LKQQKQRLKN 602 >gi|325678014|ref|ZP_08157653.1| putative DNA primase [Ruminococcus albus 8] gi|324110294|gb|EGC04471.1| putative DNA primase [Ruminococcus albus 8] Length = 434 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 106/418 (25%), Positives = 182/418 (43%), Gaps = 39/418 (9%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + I +I + + Y CPF F+ + + ++CF+C G Sbjct: 48 KMKNKILKIISIKTNLKQVG----DRLYRGKCPFCG--AVQFYVFEGENCFHCFNCGSNG 101 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D F + +V D + KK + ++ A +FF+ + Sbjct: 102 DQADF-MHKYNVHYKNAV-------------GDRNVAKKPYNLQKIYKMNYDAANFFYKN 147 Query: 132 LKNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L + +D Y +++R + I F++GYA + +SL+E++ + G++ E++++ L I Sbjct: 148 LFSKKDTACLDYLINKRKLTVKTICNFRMGYADKNYFSLKEYMLKLGYTIEELLQGSL-I 206 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 + D F NR +FP G +I FGGR L + KYLNS T + K L++ Sbjct: 207 TVSKNDEIIDFFNNRAVFPFIDLNGNIIGFGGRKLDGDNNFKYLNSKNTPCYSKNNYLFS 266 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 A+ + IL EG +DV+SL QAG + ++S GT+LTE Q LL Sbjct: 267 LNFAMKKI----------CCGETPILCEGNLDVISLHQAGFRTAIASCGTSLTENQAALL 316 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 K S ++++C+D D+ G AA KAID+ G V +S +DPD +I+ +G Sbjct: 317 KKYSDKVIICYDNDEAGKNAADKAIDI---LEKAGLETYIVFMSEAKDPDEYIKEFGSQK 373 Query: 371 FEKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHIKDQKLRYYY 424 F +LI S + R + D + + N+ ++ +R + Sbjct: 374 FYELIKNSTKDPIYFRMSRIADKYDLTDYDAQRCFLKEVTELSLRKNYDPERTIRETF 431 >gi|310764976|gb|ADP09926.1| Dnag primase-like protein [Erwinia sp. Ejp617] Length = 920 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 146/392 (37%), Gaps = 42/392 (10%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFHDEKTPS +K Sbjct: 3 RIAEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVTLCPFHDEKTPSCVITPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMQSENLSLRKAVERLRAELGENPALVPLVAQPDAFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + + Y R + F+LG+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K I + L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 171 KKLKGGAAIRSRLQALGIMRESGHEHFTGCLVVPVVDLHGQIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG++NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGLRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 ++ G R + ++++ FD D G AA + L + ++ Sbjct: 274 AAYGVNGFTDDHRNAFAQHGTKQVLIAFDNDATGNVAA---VRLAAELVQMQIDTFRIVF 330 Query: 354 SRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + F L + P+ D Sbjct: 331 PAGMDANGYLCRVAEPEREFGLLAGSAQPMRD 362 >gi|262360744|gb|ACY57465.1| DNA primase [Yersinia pestis D106004] Length = 396 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 111/401 (27%), Positives = 185/401 (46%), Gaps = 38/401 (9%) Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 +YDRFR R++FPIR RG+VIAFGGR L KYLNSPET +FHKG+ LY + A Sbjct: 9 RTYDRFRERVMFPIRDKRGRVIAFGGRIL-GDGVPKYLNSPETEIFHKGRQLYGLYEA-- 65 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 V + + +++VEGYMDV++L Q G+ V+SLGTA T ++LL++ + Sbjct: 66 --------QVNHPNPTRLLVVEGYMDVVALAQFGIDYAVASLGTATTAEHIQLLFRATDN 117 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 ++ C+DGD G AA++A++ L +L G ++ F+ L GEDPD+ +R GK AFE+ + Sbjct: 118 VICCYDGDRAGRDAAWRALETALPYLNDGRQLRFMFLPDGEDPDTLVRKEGKDAFEQRME 177 Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + PL L++ ++PD RA+L I+ + + LR Y Q + ++L L Sbjct: 178 AAQPLSTFLFETLMPQVDLSSPDGRAKLSTLALPLISQVPGEALRLYLRQQLGNKLGLLD 237 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + + + K + L+ L+ +P Sbjct: 238 DSQLDKLMPKQIDNANTYQPPQLKRTTM--------------------RILIGLLVQNPQ 277 Query: 497 ILQEQ--YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + Q L + L+ L + Q ++ + + F + L+ L Sbjct: 278 LATLIPSLQGLEQAKLAGLP---LFIELVETCLAQPGLTTGQLLELYRDNKFSQQLETLA 334 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + E VD ++ ++ L++R + Sbjct: 335 TW--NHMIVEDMVEPTFVDTLASLYDSILEQRQETLIARDR 373 >gi|213027803|ref|ZP_03342250.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 377 Score = 159 bits (402), Expect = 1e-36, Method: Composition-based stats. Identities = 105/424 (24%), Positives = 185/424 (43%), Gaps = 50/424 (11%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 +FPIR RG+VI FGGR L ++ KYLNSPET +FHKG+ LY + A Y + R Sbjct: 1 MFPIRDKRGRVIGFGGRVL-GNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQR--- 56 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326 +++VEGYMDV++L Q + V+SLGT+ T + +L++ + ++ C+DGD Sbjct: 57 -------LLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRA 109 Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386 G AA++A++ + ++ G +V F+ L GEDPD+ +R GK AFE + ++ PL L+ Sbjct: 110 GRDAAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLF 169 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 ++PD +L IN + R Q + +L + Sbjct: 170 NSLLPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQLRQTLGLKLGIFDDSQLDRLV-- 227 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ--YQE 504 P+ +L ++++ L+ L+ +P + Sbjct: 228 -----PKQAESGVSRPAPQLKRTTM-------------RILIGLLVQNPDLAPLVPPLDA 269 Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 L + L L+ L + Q ++ + L++L +W Sbjct: 270 LDQNKL--PGLG-LFKELVKTCLAQPGLTTGQLLELYRGTNDAATLEKL-------SMWD 319 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623 + I + + +L + LL ++EE+ IA+ G +E+ L ++ E Sbjct: 320 DIADKAI--AEKTFTDSLN-HMFDSLLQLRQEEL---IARDRTHGLSSEERRELWTLNQE 373 Query: 624 VHIQ 627 + + Sbjct: 374 LARK 377 >gi|330686106|gb|EGG97727.1| toprim domain protein [Staphylococcus epidermidis VCU121] Length = 354 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 87/377 (23%), Positives = 150/377 (39%), Gaps = 23/377 (6%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 +FP+++++G+++ + RT + KYLNSPET +F K K LYN A ++K Sbjct: 1 MFPLKNAQGRIVGYSART-YTNQEPKYLNSPETPIFQKRKLLYNLDKARKSIRK------ 53 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDP 326 + IIL+EG+MDV+ AG++ VV+S+GT L+ + + KL+ I L FDGD Sbjct: 54 ----NDEIILLEGFMDVIKSDHAGLKTVVASMGTQLSNEHVTFIKKLTSNITLMFDGDFA 109 Query: 327 GLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386 G A K L G V V L DPD +IR YG AF + + + M Sbjct: 110 GREATLKTGQ---ALLEQGLNVFVVQLPSDMDPDEYIRKYGNDAFIEFVQKDKKSFVMFK 166 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 ++ N + + I + L+ Q + + + F+ E G Sbjct: 167 VNTHKDEIQNNDLAYEKYLKEVTQDIAAMTSPILQKKVLQDVAELFKVSFETLDYEV-GL 225 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 + + N + +++ + E ALL + +Q++ Sbjct: 226 RQQSQGNVPSYPDYAYAYEGQPQQVIQFNQLTRHEKAERALLKHFLQDKDTFLNYHQQIE 285 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + N +++++ L + + + Q + E L LD V + Sbjct: 286 VDDFTNAYFKRIFNILHDYYSNNDTYQLSSMIQYIDSDDLREALISLDSHVLN------- 338 Query: 567 TEANIVDVRQGYQQALA 583 E + Y L Sbjct: 339 -EEPFEHELEDYINILK 354 >gi|269214558|ref|ZP_06158649.1| DNA primase [Neisseria lactamica ATCC 23970] gi|269209457|gb|EEZ75912.1| DNA primase [Neisseria lactamica ATCC 23970] Length = 431 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 130/454 (28%), Positives = 218/454 (48%), Gaps = 31/454 (6%) Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 +D+RG+ + I + LGYAPD L + + + +++ G++ID YDRFR Sbjct: 1 MDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVIDN--EGRHYDRFR 56 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 +R++FPIR+ RGQVI FGGR L KYLNSP+T LF KGKNLY + ++++ R Sbjct: 57 HRIMFPIRNPRGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGRAAVKEAGR 115 Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 I++VEGYMDV++L Q GV V++LGTA T +++L + + I CFDG Sbjct: 116 ----------ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQADSIYFCFDG 165 Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLV 382 D G +AA++A++ L L ++F+ L DPDS+IR YGKT FE L+ +S PL Sbjct: 166 DSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKTQFEDALLNQSKPLS 225 Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + W+ +++ + NT + +AEL + I L Y Q + + + Sbjct: 226 EYFWEHLSDDLNLNTQEGKAELVKTSSPLLVQITAPALGYLLKQRLSELVGIDPDNLAQL 285 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 K++ + ++ K P + Q + P+L + + LIN P Sbjct: 286 LGQ--EVPKRHVKQKNYKLPPISVKQPVM--------PTLVQRQIRSLLIN-PDWAAYI- 333 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 +L D + + L + + +I + + + E + ++ R + Sbjct: 334 -DLPDYLALDGDFACLANLAETIKNHPSVPATAQILEHMRGSPYEETINRIFRSALQSEE 392 Query: 563 WSATTEANIVDVRQGYQQALALYK--RFRLLSRQ 594 E + + + G ++ L K + L ++ Sbjct: 393 MEGGGEEDCENFQIGIKKLLNELKYSQIEALKQK 426 >gi|259907779|ref|YP_002648135.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] gi|259909772|ref|YP_002650128.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|259909779|ref|YP_002650135.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224963401|emb|CAX54889.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965394|emb|CAX56926.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965401|emb|CAX56933.1| Dnag primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 894 Score = 159 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 116/674 (17%), Positives = 210/674 (31%), Gaps = 84/674 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D A CPFHDEKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + I D A+ L ++ Sbjct: 274 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 332 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406 G D + ++ + F L + P+ D M+ + + D +E Sbjct: 333 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 392 Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 ++ + Q + F + S R Sbjct: 393 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 452 Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + + +S + + + + + E A L L+N P + Sbjct: 453 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 512 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +LA L + + + + Q G L+ + + + Sbjct: 513 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 571 Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 E+N+ + + + L + + E IA + G+ Sbjct: 572 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 628 Query: 612 EKTAILISILHEVH 625 + T L++ + V Sbjct: 629 DATGNLVTKQYRVK 642 >gi|300723779|ref|YP_003713086.1| DnaG primase-like [Xenorhabdus nematophila ATCC 19061] gi|297630303|emb|CBJ90957.1| DnaG primase-like [Xenorhabdus nematophila ATCC 19061] Length = 920 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 151/388 (38%), Gaps = 36/388 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L +P+ +I Q W +R + CPFH E+TPS SK Sbjct: 3 RIPDAELQHLKAAVPLVTIIEQQGRQWFKRGKDMTV-----LCPFHQEQTPSMVITPSKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL--I 118 Y+CF C G L ++ G S +V+RL A+ G P +P + E + Sbjct: 58 LYHCFGCGAGGSVLDWVMKTEGLSLRHAVERLRAVLG-NNPSGEPLVAPAELAGEAVGQQ 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ +F+HH+L A + + Y R + FKLG+A +L L K Sbjct: 117 ALLSRVVEFYHHTLLQAPEAQD-YLAKRRLNHPELVAQFKLGFA---NRTLGYRLPPKKV 172 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 I L G ++ R L+ P+ +GQV GR +S S Sbjct: 173 KAGAEIRRRLQAAGVLRENGHEHLRGSLVIPVIDHQGQVHELYGRKISNDLSRGT----- 227 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 K+LY L + ++S +IL E +D LS +G +NV ++ Sbjct: 228 ------AKHLY-----LPGQHAGVWNAAALSASKTLILCESLIDALSFWVSGHRNVTAAY 276 Query: 299 GTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 G ++ +I++ FD D+ G AA + L G V Sbjct: 277 GVNGVTDDHWQAFEQHGIQQILIAFDNDNAGNDAA---VKLAAALTAKGIAPLRVEFPPD 333 Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLV 382 D +S++ +TAF LI ++P+ Sbjct: 334 RDANSYLCQVAEPETAFSLLIEGAVPMQ 361 >gi|330723943|gb|AEC46313.1| DNA primase [Mycoplasma hyorhinis MCLD] Length = 595 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 131/643 (20%), Positives = 255/643 (39%), Gaps = 73/643 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ ++ + I +I +++ ++ D+ CPFH++ +PS + SK + CFSC Sbjct: 6 IETIINQVNIFEVISNFINLSKKGN-----DFLGLCPFHEDSSPSLSVSVSKKIFKCFSC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125 +V G+ F+ L + +++++ + L +++ + ++ +E A Sbjct: 61 NVGGNVYYFVKRLNNWNDLKTLEYFEKTFNLNLNSSLIAKNVKEFTPNEEKALKALEDAF 120 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 FF LK L YL +R + I+ F LGY P S ++E L +KG E ++ Sbjct: 121 LFFSLELKQNSPDYLKKYLLQRNLTKEIIDYFSLGYCPKS--GIKEKLLKKGHDEAILLN 178 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETILFHK 244 LL + + ++R+IF I++S GQ++ F R L KY+NS LF K Sbjct: 179 YSLLSFENKTDIF----QDRIIFTIKNSEGQIVGFSARKILDSTLGPKYINSSANSLFVK 234 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LYN+ A+ Y N+S +I+ EG+MDV++ + V+NVV+ +GTALT+ Sbjct: 235 SQILYNYSNAIQYA----------NASKTLIICEGFMDVIAFFRDEVKNVVALMGTALTK 284 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 + L I+L D D G+ A+ K+I L L + + +DPD + Sbjct: 285 DHISYLKPF--EIILILDSDQAGIDASLKSISL---LLENKISIKVLKRKLEKDPDQYFV 339 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--------PDERAELEIHLKNCINHIK 416 GK + + + + + ++K+ +E N D L+ + N N+ Sbjct: 340 TNGKGSLKLELDNTQDAIHWVYKKLSEKIVKNDLKTLDTFIYDFSKYLQHYSINFQNNFI 399 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKG 474 +Q + + +L + + N + L + Sbjct: 400 EQAEKDFSIPKASWKLVNRWSSNSRYYYPETTTNNDNLSLIPTSNDLETLGVEPKHPLFQ 459 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K S E LL +L++ P L+ + ++ + Q +S L + Sbjct: 460 KKVFNISQSEKILLFSLLHKPEFLKII--TFFNYQFQTSIFQSYYSELVATNFN------ 511 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 L + + + S + + + + + + +Q Sbjct: 512 ---------------LDVIKKVYYNLNASSTIKGKTLK--IETSADKIEMLIKTLNIEKQ 554 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 K++I + K +E E+ I + + + ++ Sbjct: 555 KQKIATLSKLLKNKTSSE---------QEIKRSISETQKENSL 588 >gi|310766359|gb|ADP11309.1| Dnag primase-like protein [Erwinia sp. Ejp617] Length = 900 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 106/609 (17%), Positives = 187/609 (30%), Gaps = 76/609 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D A CPFHDEKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQT 115 Y+CF C G L +L S ++V+RL A G P V P + E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSENLSLRKAVERLRAELG-DNPAVAPLVTAAEPDVFADDEA 116 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 117 GRQALLERVTAFYHQTLLNAP-EALAYLEKRRLNHPELVAQFRPGFA---NRTLAYRLPP 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I + L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 173 KKLKDGAAIRSRLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM--- 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275 Query: 296 SSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++ G T R + + VL D A+ L ++ Sbjct: 276 AAYGVHGFTGDHRRAFAQHEIKQVLIA--FDNDAAGNAAAVRLAAELAAMQIDAFRIVFP 333 Query: 355 RGEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------ 406 +G D + ++ + F L+ + P+ D + Sbjct: 334 QGMDANGYLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVV 393 Query: 407 ------------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 ++ + Q + F + S R Sbjct: 394 VERGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLDRESGAAFADSLDLISARSR 453 Query: 449 YWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHP 495 + L +S + + + + +E A L L+N P Sbjct: 454 SGYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPQPEENAPQLTEQERAEALALLNDP 513 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +LA L + + + + Q G L+ + Sbjct: 514 RLGSRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLG 572 Query: 556 QVRDAGLWS 564 + + Sbjct: 573 LMPEEERMQ 581 >gi|290580719|ref|YP_003485111.1| putative DNA primase [Streptococcus mutans NN2025] gi|254997618|dbj|BAH88219.1| putative DNA primase [Streptococcus mutans NN2025] Length = 465 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 109/500 (21%), Positives = 199/500 (39%), Gaps = 42/500 (8%) Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 + YL ERG+ I FK+G AP+ L + + +K I L + Sbjct: 4 TKVGETARQYLYERGLTDELITYFKIGLAPNEYDYLYQAMLKKYDE--DTIINSGLFNLS 61 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK----YLNSPETILFHKGKNLY 249 +S + YD FRNR++FP+ G +I F GR ++ ++ K Y N+ TI+F+K LY Sbjct: 62 DSNSIYDAFRNRIMFPLTDEFGHIIGFSGRIWTEEDTSKKLAKYKNTRSTIIFNKSYELY 121 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 + + L+EG+MDV++ +AG+ N V+S+GTALT ++ Sbjct: 122 HLDK----------AKAAAKKEHELYLMEGFMDVIAAYRAGIPNAVASMGTALTSEHVKH 171 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L K + +++L +DGD G A K++DL+ V V + DPD FI+ + Sbjct: 172 LRKFTKKVILTYDGDKAGQNAIAKSLDLL-----SNMAVEIVRIPGQMDPDEFIKENSEE 226 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 EKL+ ++ W + + + + + I + Y + Sbjct: 227 ELEKLLKQARISSAEFWIEHLKPENIDNLQAEIDYVEKIAKVIAASPSITAQNTYINKVA 286 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 + L + + R ++ + Q L+ L K + E+ L Sbjct: 287 EFLPDFDYLQVEQAVNNERLQTRSQISEQESANQQVLID--LPVTKQLTALTKAESQLFH 344 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 L++H +L E A ++ ELQ+L+ + E + ++ +L E + L Sbjct: 345 RLLHHDYLLNEFRNR-AHFKFTTPELQELYQ-ILKTNGEINAYDLSQLSDQLQETYYRVL 402 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 + L E ++RQ Q +R ++ + K I + + G Sbjct: 403 EENL------------PEEIAEDEIRQIEDQIDKCLQR-----QEMRKQSKAIRESSNHG 445 Query: 610 EAEKTAILISILHEVHIQIH 629 + + ++ L + Sbjct: 446 DVDTAVEGLAALIAQKRNME 465 >gi|304373197|ref|YP_003856406.1| DNA primase [Mycoplasma hyorhinis HUB-1] gi|304309388|gb|ADM21868.1| DNA primase [Mycoplasma hyorhinis HUB-1] Length = 595 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 131/643 (20%), Positives = 255/643 (39%), Gaps = 73/643 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ ++ + I +I +++ ++ D+ CPFH++ +PS + SK + CFSC Sbjct: 6 IETIINQVNIFEVISNFINLSKKGN-----DFLGLCPFHEDSSPSLSVSVSKKIFKCFSC 60 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVAT 125 +V G+ F+ L + +++++ + L +++ + ++ +E A Sbjct: 61 NVGGNVYYFVKRLNNWNDLKTLEYFERTFNLNLNSSLIAKNVKEFTPNEEKALKALEDAF 120 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 FF LK L YL +R + I+ F LGY P S ++E L +KG E ++ Sbjct: 121 LFFSLELKQNSPDYLKKYLLQRNLTKEIIDYFSLGYCPKS--GIKEKLLKKGHDEAILLN 178 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR-TLSKGESVKYLNSPETILFHK 244 LL + + ++R+IF I++S GQ++ F R L KY+NS LF K Sbjct: 179 YSLLSFENKTDIF----QDRIIFTIKNSEGQIVGFSARKILDSTLGPKYINSSANSLFVK 234 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LYN+ A+ Y N+S +I+ EG+MDV++ + V+NVV+ +GTALT+ Sbjct: 235 SQILYNYSNAIQYA----------NASKTLIICEGFMDVIAFFRDEVKNVVALMGTALTK 284 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 + L I+L D D G+ A+ K+I L L + + +DPD + Sbjct: 285 DHISYLKPF--EIILILDSDQAGIDASLKSISL---LLENKISIKVLKRKLEKDPDQYFV 339 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNT--------PDERAELEIHLKNCINHIK 416 GK + + + + + ++K+ +E N D L+ + N N+ Sbjct: 340 TNGKGSLKLELDNTQDAIHWVYKKLSEKIVKNDLKTLDTFIYDFSKYLQHYSINFQNNFI 399 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL--MQSSLVKG 474 +Q + + +L + + N + L + Sbjct: 400 EQAEKDFSIPKASWKLVNRWSSNSRYYYPETTTNNDNLSLIPTSNDLETLGVEPKHPLFQ 459 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K S E LL +L++ P L+ + ++ + Q +S L + Sbjct: 460 KKVFNISQSEKILLFSLLHKPEFLKII--TFFNYQFQTSIFQSYYSELVATNFN------ 511 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 L + + + S + + + + + + +Q Sbjct: 512 ---------------LDVIKKVYYNLNASSTIKGKTLK--IETSADKIEMLIKTLNIEKQ 554 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 K++I + K +E E+ I + + + ++ Sbjct: 555 KQKIATLSKLLKNKTSSE---------QEIKRSISETQKENSL 588 >gi|284799937|ref|ZP_06390437.1| DNA primase [Neisseria subflava NJ9703] gi|284796405|gb|EFC51752.1| DNA primase [Neisseria subflava NJ9703] Length = 459 Score = 158 bits (398), Expect = 4e-36, Method: Composition-based stats. Identities = 134/490 (27%), Positives = 225/490 (45%), Gaps = 35/490 (7%) Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + YLD+RG+ + I + LGYAPD L + + + +++ G++ID Sbjct: 3 FNPVAKAYLDKRGLSAEVIAHYGLGYAPDGWQPLAQVF--QPYPNTALVDTGMVIDN--E 58 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 YDRFR+R++FPIR+ RGQVI FGGR L KYLNSP+T LF KGKNLY + Sbjct: 59 GKHYDRFRHRVMFPIRNPRGQVIGFGGRVL-DDSKPKYLNSPDTPLFDKGKNLYGLYEGR 117 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 ++++ R I++VEGYMDV++L Q GV V++LGTA T +++L + + Sbjct: 118 AAVKEAGR----------ILVVEGYMDVVALAQFGVGYGVAALGTATTAEHVKILMRQAD 167 Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-L 374 I CFDGD G +AA++A++ L L ++F+ L DPDS+IR YGK FE L Sbjct: 168 SIYFCFDGDSAGRKAAWRALENALPQLKDDKSLHFLFLPEEHDPDSYIRAYGKAQFEDAL 227 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +S PL + W+ ++ + NT + +AEL + I L Y Q + + + Sbjct: 228 LNQSKPLSEYFWEHLSDGLNLNTQEGKAELVKTSSPLLAQITAPALGYLLKQKLSELVGI 287 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 K++ + + K P + Q +++ +L + + LIN Sbjct: 288 DPDNLAQLLGQEA--PKRHVKQKSYKLPPISVKQPTML--------TLVQRQIRSLLIN- 336 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 PA +L D + + L + + ++ + + + E + Q+ Sbjct: 337 PAWASYI--DLPDYLALSGDFACLANLAETIKHHDTTPATAQVFEYMRGSPYEETVNQIF 394 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ-IAQVTAKGEAEK 613 + E + + G ++ L K Q E ++++ I + E Sbjct: 395 LSTLHSEEMEGDNEEDCESFQIGMKKLLNELK-----YSQIETLKQKSIQTGLTENEKRL 449 Query: 614 TAILISILHE 623 L++ Sbjct: 450 LLSLLTAKQN 459 >gi|312142472|ref|YP_003993918.1| DNA primase catalytic core domain [Halanaerobium sp. 'sapolanicus'] gi|311903123|gb|ADQ13564.1| DNA primase catalytic core domain [Halanaerobium sp. 'sapolanicus'] Length = 1042 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 105/497 (21%), Positives = 192/497 (38%), Gaps = 50/497 (10%) Query: 8 IKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPS-----FHCNDSKGF 61 IK++ + I +I + V + TN G FH K S N KG Sbjct: 10 IKEISNNANIKEIIEEDVGSLKKESTNNYSG-------FHKNKHASESKTSLKVNTDKGV 62 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL----PVVDPKIEKKEKIQTDL 117 YYCF+C G+ +++L A F+E+ Q LAA V + KI+K + + + Sbjct: 63 YYCFNCGEGGNAITWLMANRSMGFLEAAQYLAARYDVDIGDLSEEELEKIKKFHQEKEMI 122 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + +A + ++ L+ L GI + +GYAP L L +KG Sbjct: 123 YEIFTIAAEIYNSQLREEHYHLLKNKW---GITKETADSINIGYAPSDGNFLLRKLLKKG 179 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 +S++ + + GL I YD F+ R+IFP +V+ F GR K+ Sbjct: 180 YSQKDLKKTGLFIKK------YDFFQGRIIFP-YQKNHKVVFFIGRKTKHTPDKKWERGK 232 Query: 238 ETILF-HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 L H K Y N + +++ +I+ EG D ++ QAG +S Sbjct: 233 YKKLLTHSDKRKYISSVVKNEH---LFGVDSLSNTEALIITEGITDAITTIQAGYS-CIS 288 Query: 297 SLGTALTEYQLRLLWKLSPRI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 + + + L ++ + + + ++ A++ G++V V L Sbjct: 289 PVTVQFRKKDYKKLESIAEKAKKIYIVNDNEESGAGRKGALETARYLHKKGHKVYIVELP 348 Query: 355 RGE-----DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + E D + + + K FEKL+ ES L+D+ K+ + + DE+ + Sbjct: 349 KPEEVSKIDLADYWKDHNKDDFEKLLRESNNLMDLGIKKIKQ----ASYDEKITAAESVY 404 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + D + Y + I++ + R ++ +K + ++S Sbjct: 405 PLFAGLGD-IEKDRYIKKIKEAFGNDVR------IKTIRGKINEVINKKEKKENTNDIKS 457 Query: 470 SLVKGKLSKKPSLREAA 486 S P +RE++ Sbjct: 458 EESTSNTSPIPRIRESS 474 >gi|169836355|ref|ZP_02869543.1| DNA primase, putative [candidate division TM7 single-cell isolate TM7a] Length = 153 Score = 156 bits (395), Expect = 8e-36, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 6/125 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D +++ + I ++IG+Y++ R N + PF EKTPSF + K ++ Sbjct: 27 QDAKEEVRGRLAIEDIIGEYIELKRAGRN-----FKGLSPFTAEKTPSFFVSPEKNIWHD 81 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRLIEV 123 FS + GD SF+ + G F E+++ LA A V L K K + L + + Sbjct: 82 FSSNKGGDIFSFIMEVEGLGFREALELLARKANVDLSLYKTDKHRDIAKKKQRLFEINKW 141 Query: 124 ATDFF 128 F Sbjct: 142 VCKIF 146 >gi|294669704|ref|ZP_06734771.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308617|gb|EFE49860.1| hypothetical protein NEIELOOT_01605 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 433 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 122/452 (26%), Positives = 203/452 (44%), Gaps = 35/452 (7%) Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 +GYAPD L + + + + E G +I + YDRFR+R++FPIR +G+VI Sbjct: 1 MGYAPDGWQPLAQVF--QPYPNNALTECGQVIHNEEQNRYYDRFRHRIMFPIRDQQGRVI 58 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 FGGR L KYLNSP+T LF KG+NLY + A N ++ + R I++VE Sbjct: 59 GFGGRVL-DDSKPKYLNSPDTPLFDKGRNLYGLYEARNAVRDAGR----------ILVVE 107 Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338 GYMDV++L Q G+ V+SLGT+ T +++L + S I CFDGD G +AA++A++ Sbjct: 108 GYMDVVALAQFGIPYAVASLGTSTTGEHIKILMRQSDEIYFCFDGDAAGRKAAWRALENA 167 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNT 397 L L G +NF+ L DPDS+IR +GKT FE LI +S PL + W+ ++ + T Sbjct: 168 LPQLKDGKSLNFLFLPPEHDPDSYIRAHGKTQFEDALIHQSKPLSEYFWQALSDGLNLAT 227 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + ++ L + I L + Q + + + + A+ Sbjct: 228 QEGKSRLLKTAAPLLAQITAPALGFLLKQRLAELVGIDPADLAVLLGQETPPRRVQAKSY 287 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ-YQELADIRYDNNELQ 516 ++R +L + + +L+++PA E + D L Sbjct: 288 KLPRETRR----------QPAMLTLAQRQI-RSLLSNPAWAVHVRLPEYVVLEGDTACLA 336 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL--DRQVRDAGLWSATTEANIVD- 573 + F+ S I + G +L+Q+ + D E D Sbjct: 337 NIADFILSGST---PPDHARIWEHFRGTDTGNVLQQIYQAGGLDDGEDGGEENETAFSDG 393 Query: 574 ---VRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + ++ A + + + + EK++ Sbjct: 394 MGKLIKEFRHAQLEALKRKTVEGGLNDAEKKL 425 >gi|257453788|ref|ZP_05619066.1| DNA primase [Enhydrobacter aerosaccus SK60] gi|257448715|gb|EEV23680.1| DNA primase [Enhydrobacter aerosaccus SK60] Length = 739 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 6/103 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ I ++ + I +IG++V+ R ++ CCPFH EKTPSF N KG Sbjct: 1 MS-NNAIIDQIIANADIVKIIGKHVELKRSGN-----EFKGCCPFHGEKTPSFFVNPQKG 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 Y CF C V G+ L+FL + E+++ L+ G+ LP Sbjct: 55 LYNCFGCGVAGNALTFLKEYENLTAGEALKELSRQTGIELPKE 97 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 132/557 (23%), Positives = 228/557 (40%), Gaps = 77/557 (13%) Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 LP D + + L L+ F+ H L+ + +YL +RG+ H IE F L Sbjct: 188 LPFDDMGNNSPQDSSSSLYDLLTQICQFYQHQLQQNSFAQ--HYLLKRGLTPHTIEEFAL 245 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 G+AP+ L E Q + + ++ L+ + +D RNR+IFPIR +G+VI Sbjct: 246 GFAPNGWQHLEEAFPQ----DIEGLKILGLVRTSQNGRDFDLLRNRVIFPIRDQQGRVIG 301 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 F GRTLS E KY+NS ++ +FHK LY F K ++VEG Sbjct: 302 FAGRTLSDDEQPKYINSSDSPVFHKQAVLYGLFEGRKAKAKD------------WLVVEG 349 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339 YMDV+SL QAGV V+S+GTAL + Q+ L + +P + L FDGD G +AA++A+++ L Sbjct: 350 YMDVISLHQAGVYGAVASMGTALAQSQIERLLQFNPILTLSFDGDSAGQKAAWRAMEVGL 409 Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 L G ++F+ L DPDS+++ +G A + I +++PL L+ T NTP+ Sbjct: 410 PALTDGKELHFLTLPDNHDPDSYVKAHGLLAMRQQIAQAVPLSAYLYSSLTRQYPTNTPE 469 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ------------------------- 434 R+++ L + + + I++++ Sbjct: 470 NRSKILQQLSALTQKLPKGSYGWLLREDIKNKMGLGRKNQARQAQDALLNFDSELTVQLH 529 Query: 435 -----LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-- 487 LFQ + R + R Q+ + + + K + L E Sbjct: 530 LQLCFLFQPELLGSLEDNRISQSVIRDIYQRSEAANVFKPRPPSTKPTAPIRLDENLTGD 589 Query: 488 ---LLTLINHPAILQEQYQE--LADIRYDNNELQKLWSFLFSDFVEQKYFL--------- 533 + ++ P + + L + EL KL +++ + + F Sbjct: 590 TEGITHAMDTP--CKNYDESCCLTWQAIADEELLKLITWIQTIQSRLQDFDNPNWSTYER 647 Query: 534 ----PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 I L +L+K R ++ + D L + Sbjct: 648 INAKAHFILAGLTSEQQNKLIKHWARFFKELSQRNI-------DDISDLVTELVVQLMLE 700 Query: 590 LLSRQKEEIEKQIAQVT 606 L R+++ ++ + ++ Sbjct: 701 TLQREQKTLKADLKALS 717 >gi|312793724|ref|YP_004026647.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180864|gb|ADQ41034.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 608 Score = 156 bits (393), Expect = 1e-35, Method: Composition-based stats. Identities = 74/412 (17%), Positives = 137/412 (33%), Gaps = 77/412 (18%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D IK + I I + IG+Y+ + Y A CPFH +K PSF S+ F++C Sbjct: 4 QDIIKAIKNKIDIVDYIGRYLSLQKEGN-----SYKAICPFHADKNPSFSIKPSEQFFHC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C V GD ++F F E+V+ LA G+ + + ++K Sbjct: 59 FGCGVSGDVITFAMKYHNVDFKEAVKMLAEEIGLSIDDKQAENNTQDKK----------- 107 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 ++ L + +G S + I Sbjct: 108 --------------------------LSLDQIVAYVEMCSQYAKLTNYFADRGISPDIIK 141 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + L YD N +I PI GQ++++ R L + Sbjct: 142 KYKLG---------YDVENNTVILPIVQE-GQIVSYVRRNL-----------------DE 174 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 K Y F + ++ + + + + EG D L++ A Q ++ G + Sbjct: 175 NKTRYEFPKGHKAI-PFNLDILKDDLQTNVFITEGIFDALTIEAAIGQPAIALNGCENQK 233 Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L++L + + FD D+ G +AA + D + + + +D + Sbjct: 234 EFLQVLNQIKPKGKKFYILFDNDEAGCKAAKQLFDKMKNQYE--VAICKWEGAPYKDINE 291 Query: 362 FIRCYGKTAFEKLIVE--SLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 F + L+ + + L + F ++ + K Sbjct: 292 FWQNSQSEVINFLLWQLKAAFYPYALINFAAQYVDFIKSEKFKAISTGFKQL 343 >gi|84685252|ref|ZP_01013151.1| DNA primase (DnaG) [Maritimibacter alkaliphilus HTCC2654] gi|84666984|gb|EAQ13455.1| DNA primase (DnaG) [Rhodobacterales bacterium HTCC2654] Length = 352 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 53/128 (41%), Positives = 80/128 (62%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M+ P ++ L +I ++++ ++V WD RK+N KGDYWA CPFH+E T SFH +D KG Sbjct: 1 MSLPPGYLDRLRDNISLTDVTSRWVRWDMRKSNPEKGDYWAPCPFHEETTASFHVDDRKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCF CH KGD +SFL G SF+++V++LA I G+ + E +L++L Sbjct: 61 FYYCFGCHAKGDVVSFLKEKRGISFMQAVRQLAFICGMDDELASNDDESHSAEPLNLLQL 120 Query: 121 IEVATDFF 128 ++ + F Sbjct: 121 KDLIVENF 128 >gi|283479896|emb|CAY75812.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 928 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 102/608 (16%), Positives = 180/608 (29%), Gaps = 74/608 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 3 RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAAAEPDVFADDEAG 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L+E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 118 R-QALLERVTAFYHQTLLNAP-EALAYLEKRRLNXPXLVAQFRPGFA---NRTLAYRLPP 172 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 173 KKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGRIREVYGRKIDKPQRGM--- 229 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 230 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 275 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + + D A+ L ++ + Sbjct: 276 AAYGVXGFTGDHRHAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELAAMQIDAFRIVFPQ 334 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI------- 406 G D + ++ + F L+ + P+ D + Sbjct: 335 GMDANGWLCRVAEPEREFGLLVESAQPMRDAVRVETPVAEPEPETLPALAASPSDPGVIV 394 Query: 407 -----------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 ++ + Q + F + S R Sbjct: 395 ERGEAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLXRESGAAFADSLDLISARSRS 454 Query: 450 WKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLLTLINHPA 496 + L +S + + + E A L L+N P Sbjct: 455 GYVRQAAAELGLAEDDLRRSLGKVLLALENLAAQPEAQESGPELTEAERAEALALLNDPR 514 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + +LA L + + + + Q G L+ + Sbjct: 515 LSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMXAVLGL 573 Query: 557 VRDAGLWS 564 + + Sbjct: 574 MPEEERMQ 581 >gi|318040132|ref|ZP_07972088.1| DNA primase [Synechococcus sp. CB0101] Length = 280 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 63/299 (21%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ + + +L G + + D+ A CP+HD++ PS + ++ Sbjct: 39 LTPTVLESVRERAQVMDLFGPS-ELKKAGR-----DFVARCPWHDDRHPSLTVSTTRNRV 92 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK-EKIQTDLIRLI 121 +CF C D + +L G SF E+V LA GV + DP+ +++ E+ + L+ Sbjct: 93 HCFVCGKGTDAIGWLQDRQGLSFQEAVLELARRTGVSVAEGDPEAQERFEQEWRERRALM 152 Query: 122 EVATDF---FHHSL--KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 T+ FH +L + + YL RGI + ++LG+A Sbjct: 153 AKRTEQRTQFHQALVQQLEQGGDGADYLQARGISADTARAWQLGFAG------------- 199 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 RL+ P+ + GQ + F GR + + KY NS Sbjct: 200 ---------------------------GRLVIPLNDASGQTVGFCGRA-TGNQEPKYRNS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 P +LF + ++ A + ++K +LVEG +DV+ L QAG N V Sbjct: 232 PNDLLFQRNGLVFGLDQAADAVRK----------EGTALLVEGPLDVIQLHQAGFTNAV 280 >gi|317134068|ref|YP_004089979.1| DNA primase catalytic core domain [Ruminococcus albus 7] gi|315450530|gb|ADU24093.1| DNA primase catalytic core domain [Ruminococcus albus 7] Length = 389 Score = 154 bits (389), Expect = 4e-35, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 170/402 (42%), Gaps = 40/402 (9%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPSFHCNDSKGFYYCFSCHVKGD 72 I +I G Y CPF + + + Y+CF+C GD Sbjct: 5 SILKIISVKTSLKHIGN----GLYRGKCPFCGAIQ-----LYVFEKENCYHCFNCGKNGD 55 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132 F + ++V V I K + L A FF L Sbjct: 56 QARF-MNENKIHYKDAV---GKKNHV--------IHTKPRDLKTFYELNYEAAKFFFERL 103 Query: 133 KNARDKRLHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 + ++ Y +++RG+ + I F++GYA + SL+EH+ G++ E+++++ L + Sbjct: 104 FSKKENVCLDYLINKRGLTTETICNFRMGYADGNFTSLKEHMLGLGYTIEQLLQSSL-VT 162 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 + D F NR IFP G +I FGGR L + KYLN+ T + K L++ Sbjct: 163 VSKNDEIIDFFNNRAIFPFIDINGNIIGFGGRKLDGDNNFKYLNTKNTPCYTKNNFLFSL 222 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311 A+ + K IL EG +DV+S+ QAG + V+S GTALT Q LL Sbjct: 223 NYAVKNISK----------GETPILCEGNLDVISMHQAGFRTAVASCGTALTTKQALLLK 272 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 + S I++C+D DD G+ A KAID+ G V + + +DPD FI+ +G F Sbjct: 273 RYSDEIIICYDNDDAGIAATEKAIDI---LESVGFTVYVISIRDAKDPDEFIKKFGAKQF 329 Query: 372 EKLIVES-LPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 +LI + ++ ++ D ++ + Sbjct: 330 YQLIRNDLKNSIFYRIEQLSQKYDLTDLDAQSYFIKDVTELS 371 >gi|312174393|emb|CBX82640.1| DnaG primase-like protein [Erwinia amylovora ATCC BAA-2158] Length = 1011 Score = 154 bits (388), Expect = 4e-35, Method: Composition-based stats. Identities = 73/392 (18%), Positives = 131/392 (33%), Gaps = 27/392 (6%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + L + ++ L Q ++ D CPFH E+TPS + K Sbjct: 3 RIPQKELDQLKRRVSLAALAESQGHKLRKQGR-----DLVLLCPFHQEQTPSCVISPEKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 ++CF C G + ++ G S +V RL A AG + L L Sbjct: 58 LWHCFGCGAAGSVVDWMMKTEGFSLPRAVLRLRAFAGSGSSSAAAVPVPSPSARQTLTDL 117 Query: 121 IE-------VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + TD++HH+L N+ + + Sbjct: 118 NDDGQALLRQVTDWYHHNLLNSPEALAWLEKRGLNHPGLVSHFRLGFAGAHGVAAALPSP 177 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K + L + +++ + R + + G A GR L Sbjct: 178 HGKEGKALRSRLTALGVVRESTRQDHFRGCLVVPVTGWAESGN-AAQRGRVLQLYGRRTL 236 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +S K+LY L + + + +SS IL E +D ++ AG +N Sbjct: 237 TDSQIKKG--SAKHLY-----LPAPLRGVWNEQALAASSEAILCEALIDAMTFWCAGYRN 289 Query: 294 VVSSLG-TALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 +++ G T L L R+++ +D D+ G R A G V Sbjct: 290 AIAAFGVNGFTADHLAALRCHGVKRVLIAYDRDEAGDRGAEVVA---SELQQSGIEAWRV 346 Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLV 382 +G D +++ ++ + L +ES + Sbjct: 347 RFPQGLDANAYALKSGNPESALALALESASRM 378 >gi|42869|emb|CAA23636.1| unnamed protein product [Escherichia coli] Length = 81 Score = 154 bits (388), Expect = 5e-35, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N + ACCPFH+EKTPSF N K F Sbjct: 4 RIPRVFINDLLARTDIVDLINARVKLKKQGKN-----FHACCPFHNEKTPSFTVNGEKQF 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCS 84 Y+CF C G+ + FL Sbjct: 59 YHCFGCGAHGNAIDFLMNYDKLE 81 >gi|310766354|gb|ADP11304.1| Dnag primase-like protein [Erwinia sp. Ejp617] Length = 947 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 139/389 (35%), Gaps = 34/389 (8%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D A CPFHDEKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116 Y+CF C G L +L S +V+RL A G V V + + + Sbjct: 58 LYHCFGCDAGGSVLDWLMQSENLSLRRAVERLRAELGDNPAVTPLVATAEPDVFADDEAG 117 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E T F+H +L NA + + Y R + F+LG+A +L L K Sbjct: 118 RQALLERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPPK 173 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 I A L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 174 KLKGGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM---- 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 +LY L + + S+ +IL E +D +S A +NV + Sbjct: 230 --------PAHLY-----LPGQHGGVWNEQALIGSTSVILCESLIDAMSFWVARQRNVTA 276 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + G R + + D A+ L + ++ G Sbjct: 277 AYGVNGFTDDHRRAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELVQMQIDTFRIVFPAG 335 Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLVD 383 D + ++ + F L + P+ D Sbjct: 336 MDANGYLCRVAEPEREFGLLAGSAQPMRD 364 >gi|310768309|gb|ADP13259.1| Dnag primase-like protein [Erwinia sp. Ejp617] Length = 390 Score = 153 bits (387), Expect = 6e-35, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 139/389 (35%), Gaps = 34/389 (8%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D A CPFHDEKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVALCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTD 116 Y+CF C G L +L S +V+RL A G V V + + + Sbjct: 58 LYHCFGCDAGGSVLDWLMQSENLSLRRAVERLRAELGDNPAVTPLVATAEPDVFADDEAG 117 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L+E T F+H +L NA + + Y R + F+LG+A +L L K Sbjct: 118 RQALLERVTAFYHQTLLNAP-EAIAYLEKRRLNHPDLVAQFRLGFA---NRTLAYRLPPK 173 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 I A L G + ++ F L+ P+ GQ+ GR + K + Sbjct: 174 KLKGGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGQIREVYGRKIDKPQRGM---- 229 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 +LY L + + S+ +IL E +D +S A +NV + Sbjct: 230 --------PAHLY-----LPGQHGGVWNEQALIGSTSVILCESLIDAMSFWVARQRNVTA 276 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + G R + + D A+ L + ++ G Sbjct: 277 AYGVNGFTDDHRRAFAQHGTKQVLI-AFDNDAAGNAAAVRLAAELVQMQIDTFRIVFPAG 335 Query: 357 EDPDSFIRC--YGKTAFEKLIVESLPLVD 383 D + ++ + F L + P+ D Sbjct: 336 MDANGYLCRVAEPEREFGLLAGSAQPMRD 364 >gi|283477641|emb|CAY73557.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 905 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 115/674 (17%), Positives = 209/674 (31%), Gaps = 84/674 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 14 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 68 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 69 LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 128 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 129 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 181 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 182 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 238 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 239 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 284 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + I D A+ L ++ Sbjct: 285 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 343 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406 G D + ++ + F L + P+ D M+ + + D +E Sbjct: 344 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 403 Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 ++ + Q + F + S R Sbjct: 404 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 463 Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + + +S + + + + + E A L L+N P + Sbjct: 464 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 523 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +LA L + + + + Q G L+ + + + Sbjct: 524 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 582 Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 E+N+ + + + L + + E IA + G+ Sbjct: 583 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 639 Query: 612 EKTAILISILHEVH 625 + T L++ + V Sbjct: 640 DATGNLVTKQYRVK 653 >gi|312621869|ref|YP_004023482.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202336|gb|ADQ45663.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 605 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 71/412 (17%), Positives = 140/412 (33%), Gaps = 77/412 (18%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ +K++ I I + IG+Y+ ++ + Y A CPFH +K PSF+ S+ F++C Sbjct: 4 QEIVKEIKSKIDIIDYIGRYLQLEKEGS-----SYKALCPFHPDKNPSFYIKPSEQFFHC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C V GD ++F F E+V+ LA G+ + +E+ Sbjct: 59 FGCGVGGDVITFAMKYYNVDFKEAVKMLAEEIGLSTGSKQTEENTQEEK----------- 107 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 L + + + + + +Y + Sbjct: 108 -------LSIDQIIAYVETCHQYASLTSYFADRGIPTSLIDKYKM--------------- 145 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +D N ++ PI GQ+I++ R L + Sbjct: 146 -------------GFDVENNAIVLPIFQD-GQIISYVRRNLDDNKPR------------- 178 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 Y F N + ++ + + + EG D L++ A Q ++ G + Sbjct: 179 ----YEFPKGSNAI-PFNVDLLKDDQQRNVFIAEGIFDALTIEAAIGQPAIALNGCENQK 233 Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L++L S + + FD D+ G +AA + D + + + +D + Sbjct: 234 EFLQVLNLIKPKSKKFYILFDNDEAGSKAAKQLFDKMKNQYE--VAICRWEGAPYKDINE 291 Query: 362 FIRCYGKT--AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 F++ F K +++ L + F D+ + K Sbjct: 292 FLQNSQDECIKFLKWQLKAAFYPYALINFAAQYVDFLKSDKFKAISTGFKQL 343 >gi|283479864|emb|CAY75780.1| DNA primase [Erwinia pyrifoliae DSM 12163] gi|283479873|emb|CAY75789.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 894 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 115/674 (17%), Positives = 209/674 (31%), Gaps = 84/674 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 3 RIAETELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + L Y R + F+ G+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EALAYLEKRRLNYPELVAQFRPGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G++ GR + K + Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGCLVVPVADLHGRIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + I D A+ L ++ Sbjct: 274 AAYGVNGFTDDHRRAFAQH-EIKQVLIAFDNDAAGNAAAVRLAAELAAMQIDTFRIVFPA 332 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNTPDERAELEI- 406 G D + ++ + F L + P+ D M+ + + D +E Sbjct: 333 GMDANGYLCRVAEPEQEFGLLAGSAQPMRDAVTVPEMVVPETLPALAASPSDPGVIVERG 392 Query: 407 --------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 ++ + Q + F + S R Sbjct: 393 EAGEVTIGLGAQRWRVRGLAQVKPGAAVMKLSLQVLDRESGAAFADSLDLISARSRGGYV 452 Query: 453 NARHRDQKGPSQRLMQS-----------SLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + + +S + + + + + E A L L+N P + Sbjct: 453 RQAATELGLAEDDVRRSLGKVLLALENLAPQPEETAPELTEAERAAALALLNDPDLSGRI 512 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +LA L + + + + Q G L+ + + + Sbjct: 513 TDDLAACGVVGESTN-LLAAYLAATSRRLERPLAVLIQSSSAAGKSSLMDAVLGLMPEEE 571 Query: 562 LW----------SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 E+N+ + + + L + + E IA + G+ Sbjct: 572 RMQYSAMTGQSLFYLGESNLQHKILAIAEEEGVRQAAYALKLLQSDGELTIA---STGKD 628 Query: 612 EKTAILISILHEVH 625 + T L++ + V Sbjct: 629 DATGNLVTKQYRVK 642 >gi|312876878|ref|ZP_07736855.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796393|gb|EFR12745.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 607 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 127/376 (33%), Gaps = 75/376 (19%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + +K++ + I IG+Y+ + Y A CPFH +K PSF S+ F++C Sbjct: 2 QKIVKEIKNTLDIVEYIGRYLSLQKEGN-----SYKAVCPFHADKNPSFSIKPSEQFFHC 56 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C V GD ++F F E+V+ LA G+ + K ++ + L Sbjct: 57 FGCGVSGDIITFAMKYHNVDFREAVKMLAEEIGLSI---GSKQTEENAQKEKL------- 106 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 ++ SL +G + Sbjct: 107 ---------------------------SIDQIIAYIETCHQYTSLTSCFTDRGIPNWLVN 139 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + L D D +A F++ GQ + + R L+ E + T++ Sbjct: 140 KYKLGFDVDKTAIVLPIFKD----------GQPVLYINRFLNDSERKYDVPKSATLI--- 186 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 +N + L + + + EG D L++ A Q ++ G + Sbjct: 187 ---PFNLDILRDDL------------QTNVFITEGIFDALTIEAAIGQPAIALNGCQNQK 231 Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L++L + + FD D+ G +AA + D + + + +D + Sbjct: 232 EFLQVLEQIKPKGKKFYILFDNDEAGSKAAKQLFDKMKNQYE--VAICKWEAAPYKDINE 289 Query: 362 FIRCYGKTAFEKLIVE 377 F + + L + Sbjct: 290 FWQNSQDECIKFLKWQ 305 >gi|295111804|emb|CBL28554.1| DNA primase (bacterial type) [Synergistetes bacterium SGP1] Length = 82 Score = 153 bits (385), Expect = 1e-34, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 5/82 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 D ++ + + I +++G V R D+ CPFH+EKTPSFH + + Y+C Sbjct: 3 NDDVQLVKEKLDIVDIVGDRVRLRRAGR-----DFVGLCPFHNEKTPSFHVSQERQNYHC 57 Query: 65 FSCHVKGDHLSFLSALLGCSFI 86 F C GD +F+ G F Sbjct: 58 FGCGKGGDVFTFVMETEGLDFP 79 >gi|283479905|emb|CAY75821.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 920 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 138/390 (35%), Gaps = 38/390 (9%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P ++ L + ++ ++ Q +R D CPFHDEKTPS + +K Sbjct: 3 RIPEAELQHLKAAVSLAAVVQAQGRQLFKRGK-----DLVXLCPFHDEKTPSCVISPAKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKIEKKEKIQT 115 Y+CF C G L +L S ++V+RL A G VPL E + Sbjct: 58 LYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDVFADDEAGRQ 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L +E T F+H +L NA + Y R + F+ G+A +L L Sbjct: 118 AL---LERVTAFYHQTLLNAP-EAXAYLEKRRLNHPDLVAQFRPGFA---NRTLAYRLPP 170 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 K + I A L G + ++ F L+ P+ G + GR + K + Sbjct: 171 KKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGXIREVYGRKIDKPQRGM--- 227 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 +LY L + + S +IL E +D +S AG +NV Sbjct: 228 ---------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFWVAGQRNVT 273 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 ++ G R + I D A+ L ++ + Sbjct: 274 AAXGVNGFTGDHRHAFARH-EIKQVLIAFDNDAAGNAAAVRLAXELAAMQIDAFRIVFPQ 332 Query: 356 GEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 G D + ++ + F L + P+ D Sbjct: 333 GMDANGYLCRVAEPEXEFGLLAGSAQPMRD 362 >gi|259909521|ref|YP_002649877.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965143|emb|CAX56675.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 1021 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 73/393 (18%), Positives = 132/393 (33%), Gaps = 28/393 (7%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q ++ + V CPFH EKTPS + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPSLVISPEKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ S +V RL +G P + + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLPEFSG-QNPSSSAAVPASPPARQTLTDL 116 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +HH+L N+ + L + Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K + L + + + + R + + G V A GR L Sbjct: 177 SSKEGKRLRDRLTLLGVLRETTRQDHFRGCLVVPVVGWAESGHV-AQRGRVLQLYGRRTL 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +S ++LY L + + +SS +IL E +D ++ AG +N Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+++ G ++ L W R+++ FD D+ G R A G V Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345 Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383 G D +++ ++ + L +ES + Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378 >gi|118197643|ref|YP_874036.1| DNA primase bacterial DnaG type [Thermus phage phiYS40] gi|116266334|gb|ABJ91417.1| DNA primase bacterial DnaG type [Thermus phage phiYS40] Length = 558 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 93/501 (18%), Positives = 182/501 (36%), Gaps = 48/501 (9%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + + + +Y + R G Y+ CP H E TPSFH + + G +YCF C+ Sbjct: 3 IEHRLDFFEIASKYTNLRHRG----GGKYYGLCPLHPEDTPSFHIDTNLGVFYCFGCNTG 58 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 G+ F+S + + + L G+ + +K E + +++ + + Sbjct: 59 GNIYQFISLVEHVPINQVGEILREKFGIDV--KTKGEKKYEDDHDLFSKFLKLLSKY--- 113 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 N + + + + G+ + Y P+ R + ++ E++I G+ Sbjct: 114 ---NDTETVDDFNIKKLGLKPKYP----MFYVPNERLLDFTNEVKEKLDIERLITLGIFS 166 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 R+ +R+I PI S +++ GR+L+ KYLN+ F K ++L Sbjct: 167 RD-EEGKLKFRYMSRIIIPIYSRVNRIVGLVGRSLNDMNLPKYLNTK----FSKTEHLPF 221 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 A+ +K + + I +VEG D L+L + + S LG T Q+ L Sbjct: 222 LNEAVKIAKKK--------NLNTIYIVEGPYDALALIERDIP-AASLLGIHFTVEQIN-L 271 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + FD DD G A + ++ P FV ED D ++ Sbjct: 272 LNSFSVVYFVFDNDDAGTSAYFNVAKTIIKTNRPSFSTMFVFYKDKEDIDEILKKKSFEE 331 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 F K ++ + D+ N + P + EL I+++ ++ Sbjct: 332 FIK-TADTKDVYDVFIDAHLRNIVKDLPIKNKEL----------IREELIKRLMKLFFNY 380 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL-MQSSLVKGKLSKKPSLREAALLL 489 R + + +Y R ++ L ++ +E LL Sbjct: 381 RENEHVYNLMLRICERSKYPFDALIRRVDYVINKGLSKAKKDIESVEIDYIPPKERKLLR 440 Query: 490 TLI-----NHPAILQEQYQEL 505 ++ +H ++ + + L Sbjct: 441 GVLYLVNGHHDKLMTLKRELL 461 >gi|310766558|gb|ADP11508.1| DNA primase [Erwinia sp. Ejp617] Length = 1002 Score = 150 bits (379), Expect = 5e-34, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 126/380 (33%), Gaps = 42/380 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q + + V CPFH EKTPS + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRLQGRDRVL-----LCPFHQEKTPSCVISPDKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ G S ++V RL AG + + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTEGFSLPKAVLRLREFAGHNPSSSAAAVPASPPARQTLTDL 117 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +H +L N+ + L + Sbjct: 118 DDDGQALLGQVVNGYHRNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 177 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225 K + L + + + D FR L+ P+ RG+V+ GR Sbjct: 178 SSKEGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGNAAQRGRVLQLYGRRT 235 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 +K ++LY L + + +S+ IIL E +D ++ Sbjct: 236 LSDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASADIILCEALIDAMT 281 Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 AG +N +++ G ++ L W R+++ FD D+ G R A Sbjct: 282 FWCAGYRNAIAAFGANGFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 338 Query: 344 PGNRVNFVLLSRGEDPDSFI 363 G V G D +++ Sbjct: 339 AGIDAWRVRFPLGLDANAYA 358 >gi|262193947|ref|YP_003265156.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM 14365] gi|262077294|gb|ACY13263.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM 14365] Length = 1026 Score = 150 bits (377), Expect = 9e-34, Method: Composition-based stats. Identities = 87/465 (18%), Positives = 167/465 (35%), Gaps = 35/465 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R I+ + + +L+G+ + + + P+ + TPS + Sbjct: 7 RSLIEQVRERTDLVSLVGETISLAPSGSV-----FKGSSPWTRDATPSLVVWPHTRTWRD 61 Query: 65 FSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 FS + GD +L G F+ ++Q+LA +GV +P D + + + Sbjct: 62 FSAGGSLGGDCFDWLQQRDGVPFLGALQQLAVRSGVEVPGGDAPALDAEIARIAERRRVE 121 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A ++H L R +Y + G ++ LG+A + + G Sbjct: 122 ALLTAAASYYHSVL--PTKIRSAWYRERYGFTDATVDDLLLGWA--NGQLYEHFVDLFGV 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++E+ + GL I + D F++RL+FP G+V+ F GR + + Sbjct: 178 TQEEALATGLFIR-CKTGRIVDFFQDRLVFPYWK-HGRVVYFIGRATELTGDEPWEQAKY 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN--VVS 296 L + + + + + + ++ + + +++ EG D +S QAGV V+ Sbjct: 236 KKLLTRSER--HPYVSQHIANETFYNEDAARARDTLMITEGVTDCISAMQAGVPCISPVT 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-- 354 +L L + I++C D +D G+ A AI+ G V + Sbjct: 294 VRFRKSDHDKLIALTERCGEIIICNDAEDSGVGEA-GAIETAHALQRAGRDVVLARIPRP 352 Query: 355 ---RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 D + + G A ++ + PL L T + L L Sbjct: 353 PGTEKIDVNEVVTRQGPEALRTILGAAKPLPLYLL------EGIPTETPKTALRKQLGPT 406 Query: 412 INHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 + ++ D R S +R R + + K NA Sbjct: 407 LEALQNADPLTREACSDELRTRFRLKAATINALLRQAEQTAKPNA 451 >gi|312135658|ref|YP_004002996.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311775709|gb|ADQ05196.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor owensensis OL] Length = 607 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 72/376 (19%), Positives = 131/376 (34%), Gaps = 72/376 (19%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 +D +K + I I + IG+++ + + Y A CPFH ++ PSF+ ++ F++C Sbjct: 4 KDIVKAIKEKIDIVDYIGRFLSLQKEGS-----SYKAICPFHPDRNPSFYIKPNEQFFHC 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F C GD + F SF E+V+ LAA G+ + + KK+ + +LI Sbjct: 59 FGCGTGGDIIRFAQLYHNISFGEAVKMLAAEIGLSISDDKQEENKKQTEKIPYEQLITYV 118 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 A Y RGI +E + +G Sbjct: 119 EK------CQANASLAKSYFASRGISEKFMEKYNVG------------------------ 148 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 +D N ++FPI G+VI + R L+ + + P+ Sbjct: 149 --------------FDVENNAVVFPIVQD-GKVICWTRRNLNNPDRKY--DFPQG----Y 187 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 +N + + + + + EG D L++ +A Q ++ + Sbjct: 188 NAIPFNLDVLKD------------DKQTNVFITEGVFDALTIEEAIGQPAIALNSCTNQQ 235 Query: 305 YQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 L+ L + + FD D G A K D + N+ +D + Sbjct: 236 NFLQELNRIKPQGKKFFILFDNDHDGKEQAKKLFDKMKKVYDVAL-CNWNNNLPYKDVNE 294 Query: 362 FIRCYGKTAFEKLIVE 377 F + L+ + Sbjct: 295 FWIADPANCTKFLLWQ 310 >gi|310765755|gb|ADP10705.1| DnaG primase-like protein [Erwinia sp. Ejp617] Length = 1018 Score = 149 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 72/380 (18%), Positives = 128/380 (33%), Gaps = 43/380 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q ++ + V CPFH EK+PS + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKSPSCVISPEKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ S +V RL +G P + + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTENVSLPRAVLRLREFSG-QNPSSSAAVPASPPARQTLTDL 116 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +HH+L N+ + L + Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAVAHGVAGLLPSV 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225 K + L + + + D FR L+ P+ RG+V+ GR Sbjct: 177 SSKAGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGHAAQRGRVLQLYGRRT 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 +K ++LY L + + +S+ IIL E +D ++ Sbjct: 235 LSDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASADIILCEALIDAMT 280 Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 AG +NV+++ G ++ L W R+++ FD D+ G R A Sbjct: 281 FWCAGYRNVIAAFGANGFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 337 Query: 344 PGNRVNFVLLSRGEDPDSFI 363 G V G D +++ Sbjct: 338 AGIDAWRVRFPLGLDANAYA 357 >gi|253990785|ref|YP_003042141.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639115|emb|CAR67727.1| DnaG primase-like [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639121|emb|CAR67733.1| DnaG primase-like [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782235|emb|CAQ85399.1| putative dna primase [Photorhabdus asymbiotica] Length = 1104 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 78/392 (19%), Positives = 131/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLAHLKQSVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109 Y+CF C G L ++ G + +++RL +AG+P P+ + Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAQPESQA 116 Query: 110 KEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 + L L+ DF+H +L + + + Sbjct: 117 APLPRPKLADLDDDGQALLRQVIDFYHQNLLASPEAKEWLERRGLNHPELVSHFKLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213 L K E + + L G T+ FR ++ P+ Sbjct: 177 HHGIGGSAGLLPSKSSQEGQQLRDKLSGLGVLRTTTRQDHFRGCVVVPVIGWAESASVAS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L + + ++S Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEEAMKAASE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAYGVNGFNRDHLDALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + L G V G D + + Sbjct: 343 ---ASVAADLLESGIEAWRVQFPPGMDVNDYA 371 >gi|262194072|ref|YP_003265281.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM 14365] gi|262077419|gb|ACY13388.1| DNA primase catalytic core domain protein [Haliangium ochraceum DSM 14365] Length = 1026 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 87/465 (18%), Positives = 166/465 (35%), Gaps = 35/465 (7%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R I+ + + +L+G+ + + + P+ + TPS + Sbjct: 7 RSLIEQVRERTDLVSLVGETIALAPSGSV-----FKGSSPWTRDATPSLVVWPHTRTWRD 61 Query: 65 FSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD----PKIEKKEKIQTDLI 118 FS + GD +L G F+ ++Q+LA +GV +P D + + + Sbjct: 62 FSAGGSLGGDCFDWLQQRDGVPFLGALQQLAVRSGVEVPGGDAPALDAEIARIAERRRVE 121 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L+ A ++H L R +Y + G ++ LG+A + + G Sbjct: 122 ALLTAAASYYHSVL--PTKIRSAWYRERYGFADATVDDLLLGWA--NGQLYEHFVDLFGV 177 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 ++E+ + GL I + D F++RL+FP G+V+ F GR + + Sbjct: 178 TQEEALATGLFIR-CKTGRIVDFFQDRLVFPYWK-HGRVVYFIGRATELTGDEPWEQAKY 235 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN--VVS 296 L + + + + + + ++ + + +++ EG D +S QAGV V+ Sbjct: 236 KKLLTRSER--HPYVSQHIANETFYNEDAARARDTLMITEGVTDCISAMQAGVPCISPVT 293 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-- 354 +L L + I++C D +D G A AI+ G V + Sbjct: 294 VRFRKSDHDKLIALTERCGEIIICNDAEDSGAGEA-GAIETAHALQRAGRDVVLARIPRP 352 Query: 355 ---RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 D + + G A ++ + PL L T + L L Sbjct: 353 PGTEKIDVNEVVTRQGPEALRTILGAAKPLPLYLL------EGIPTETPKTALRKQLGPT 406 Query: 412 INHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 + ++ D R S +R R + + K NA Sbjct: 407 LEALQRADPLTREACSDELRTRFRLKAATINALLRQAEQTTKPNA 451 >gi|283479603|emb|CAY75519.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 1021 Score = 148 bits (372), Expect = 4e-33, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 130/393 (33%), Gaps = 28/393 (7%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q ++ + V CPFH EKTP + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPXLVISPEKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ S +V RL +G P + + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLPEFSG-QNPSSSAAVPASPPARQTLTDL 116 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +HH+L N+ + L + Sbjct: 117 DDDGQALLGQVVNGYHHNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K + L + + + R + + G V A GR L Sbjct: 177 SSKEGKRLRDRLTLLGVLRXTTRQDHFRGCLVVPVVGWAESGHV-AQRGRVLQLYGRRTL 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +S ++LY L + + +SS +IL E +D ++ AG +N Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+++ G ++ L W R+++ FD D+ G R A G V Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345 Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383 G D +++ ++ + L +ES + Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378 >gi|156564217|ref|YP_001429727.1| dnaG primase [Bacillus phage 0305phi8-36] gi|154622914|gb|ABS83794.1| dnaG primase [Bacillus phage 0305phi8-36] Length = 424 Score = 147 bits (371), Expect = 5e-33, Method: Composition-based stats. Identities = 91/470 (19%), Positives = 170/470 (36%), Gaps = 85/470 (18%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKG 60 D I+ +L + + +Y + A CPFH++ + + H + K Sbjct: 5 KITDDHIRQILEENDLREVAKEY------GVVFNSSN-KATCPFHNDGEHGNLHIFEKKD 57 Query: 61 ---FYYCFS--CHVK-------------------------G-DHLSFLSALLGCSFIESV 89 Y+CFS C G + + F+ + SF E+ Sbjct: 58 EDPSYFCFSRKCSAGRKWADEKKTKPNILTLPDGHKIEDGGPNVIGFVMNMERVSFPEAC 117 Query: 90 QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149 L AG+ P + + ++ + ++ ++ + L N K + Y+ RGI Sbjct: 118 MILMERAGITPPKANVNYKLEQAKKKT----HKLNYEYCRNLLAN---KAVMEYVYSRGI 170 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209 +I+ F++GY + S ++ + Sbjct: 171 TKQSIKKFRMGYISEDDNSNPLFGQKVAG---------------------RLVFGLVEEG 209 Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269 + IA RTL K E KYLN + + K LY A ++ Sbjct: 210 FNLKTSKTIAMAYRTL-KDEQPKYLNDYTSEAYEKRHYLYGLTHARKAIR---------- 258 Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329 S + ++ EGY DV+ QAG++N +++ GTA T Q+ L +++ +V +DGD G Sbjct: 259 SRGYAMVFEGYTDVIIAHQAGLENSIATCGTAFTREQMEKLKRITSNLVFWYDGDSAGFD 318 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA---FEKLIVESLPLVDMLW 386 A ++I+ L G RV V +S G DP + + + + P + ++ Sbjct: 319 AMMESIE---DLLEFGFRVKIV-VSPGMDPAEVMNKLKQDEASILNFIKGNAKPALQVVA 374 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 ++ + D + E L + I++ + + + RL Sbjct: 375 EQTLSDFDRKMQDAQMEALDELLPILESIQNPSEKVVFKSMVEKRLGVSL 424 >gi|310766565|gb|ADP11515.1| DNA primase [Erwinia sp. Ejp617] Length = 1011 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 127/380 (33%), Gaps = 43/380 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q + + V CPFH EKTPS + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRLQGRDRVL-----LCPFHQEKTPSCVISPDKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ G S ++V RL AG P + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTEGFSLPKAVLRLREFAGHN-PSSSAAAVPAAPPRQTLTDL 116 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +H +L N+ + L + Sbjct: 117 DDDGQALLGQVVNGYHRNLLNSPEALTWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIAFGGRTL 225 K + L + + + D FR L+ P+ RG+V+ GR Sbjct: 177 SSKEGKRLRDRLTLLGVLRETTRQ--DHFRGCLVVPVVGWSESGHAAQRGRVLQLYGRRT 234 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 +K ++LY L + + +S+ IIL E +D ++ Sbjct: 235 LGDNQIKK---------GSARHLY-----LPAPLAGVWNEQALKASAEIILCEALIDAMT 280 Query: 286 LCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 AG +NV+++ G ++ L W R+++ FD D+ G R A Sbjct: 281 FWCAGYRNVIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQ 337 Query: 344 PGNRVNFVLLSRGEDPDSFI 363 G V G D +++ Sbjct: 338 AGIDAWRVRFPLGLDANAYA 357 >gi|297248756|ref|ZP_06932474.1| DNA primase [Brucella abortus bv. 5 str. B3196] gi|297175925|gb|EFH35272.1| DNA primase [Brucella abortus bv. 5 str. B3196] Length = 198 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 106/200 (53%), Gaps = 10/200 (5%) Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLS---KKPSLREAALLLTLINHPAILQEQYQELAD 507 + + S L +S+LVKG LRE A++LTL+NHP +++E ++ LA Sbjct: 1 RGGPAGSGRLAISDSLARSTLVKGGRQGGAAHAPLRETAIVLTLLNHPRLIEEDFETLAA 60 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + ++ L+ L + + + + L + G G+L+K L++ V+ A LW+ATT Sbjct: 61 LDLGHDALKTLHLAMLDVLAAGRVDDGIAMRRALVDAGHGDLIKMLEQVVKGAKLWTATT 120 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 A D R+ +QAL L++R R L ++ +E + E ++T L + L ++ Q Sbjct: 121 LAAEDDAREALRQALHLHQRARTLHKELRAVEAAL-------ETDETGELFARLRDIQNQ 173 Query: 628 IHQIESQEAMIEGFGKMSGR 647 I + ++ EA+I+GFG SGR Sbjct: 174 ILKADATEALIDGFGLSSGR 193 >gi|37525094|ref|NP_928438.1| hypothetical protein plu1126 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527553|ref|NP_930897.1| hypothetical protein plu3689 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784520|emb|CAE13420.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786988|emb|CAE16062.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1104 Score = 147 bits (370), Expect = 6e-33, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106 Y+CF C G L ++ G + +++RL +AG+P P Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPESQA 116 Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 DL L+ DF+H L + + + Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVSHFRLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213 L K E + + L G T+ FR ++ PI Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L+ + + +++ Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|37525113|ref|NP_928457.1| hypothetical protein plu1145 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784539|emb|CAE13439.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 603 Score = 146 bits (369), Expect = 8e-33, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106 Y+CF C G L ++ G + +++RL +AG+P P Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPGSQA 116 Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 DL L+ DF+H L + + + Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213 L K E + + L G T+ FR ++ PI Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L+ + + +++ Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|37524550|ref|NP_927894.1| hypothetical protein plu0544 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525104|ref|NP_928448.1| hypothetical protein plu1136 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783974|emb|CAE12839.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784530|emb|CAE13430.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1104 Score = 146 bits (369), Expect = 8e-33, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106 Y+CF C G L ++ G + +++RL +AG+P P Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPGSQA 116 Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 DL L+ DF+H L + + + Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213 L K E + + L G T+ FR ++ PI Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESASVAS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L+ + + +++ Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|153874053|ref|ZP_02002415.1| truncated DNA primase [Beggiatoa sp. PS] gi|152069483|gb|EDN67585.1| truncated DNA primase [Beggiatoa sp. PS] Length = 384 Score = 146 bits (369), Expect = 8e-33, Method: Composition-based stats. Identities = 107/396 (27%), Positives = 165/396 (41%), Gaps = 28/396 (7%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265 +FPI RG+VIAFGGR L E KYLNSPET LF K + LY ++ A Sbjct: 1 MFPILDVRGRVIAFGGRKLGTSEHEPKYLNSPETPLFQKSRELYGWYFAGKI-------- 52 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 S II+VEGYMDV++L Q G+ NVV++LGTA T L L++ P I+ FDGD Sbjct: 53 ---RSLQKIIVVEGYMDVVALMQYGITNVVATLGTATTHQHLTQLFRRVPEIIFGFDGDQ 109 Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385 G +AA++A++ L L G +V FV L +G DPD+ IR G F +V ++PL + L Sbjct: 110 AGQKAAWRALETALSLLKEGRQVRFVFLPQGSDPDTLIRQEGTENFNTRLVNAMPLSNFL 169 Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 + + + D RA L K + + Q + + T Sbjct: 170 FDTLMQQIDMTSIDGRARLVELAKPLLKQLPPGPYCDLMWQKLSELTGIHLGNLATLIQ- 228 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 ++ ++ + K K+ SL A+ L++ P + Q Sbjct: 229 -------------KETIPKQPTIKTSQKVTNLKELSLAHKAI-ACLLHKPVLSQSIDYPN 274 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + KL L I + + ++L QL + S Sbjct: 275 KKLSFFKQLDIKLLLELIEFTRHNPQLNLGAICEHWRGTEYEQILNQLAVKNTHLTDNSV 334 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + D + A +R L+++ + + Sbjct: 335 DIDKEFFDAINRLYKEYA-TQRLVFLTQKITNLTAE 369 >gi|28199480|ref|NP_779794.1| hypothetical protein PD1601 [Xylella fastidiosa Temecula1] gi|182682212|ref|YP_001830372.1| zinc finger CHC2-family protein [Xylella fastidiosa M23] gi|28057595|gb|AAO29443.1| conserved hypothetical protein [Xylella fastidiosa Temecula1] gi|182632322|gb|ACB93098.1| zinc finger CHC2-family protein [Xylella fastidiosa M23] gi|307578483|gb|ADN62452.1| zinc finger CHC2-family protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 351 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + L I + ++G+YV R +Y CPFHDE TPSF KGF +CF C Sbjct: 7 QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHDEHTPSFTVIPHKGFVHCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92 D + F+ L F E+V++L Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQL 85 >gi|283479610|emb|CAY75526.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 1021 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 72/393 (18%), Positives = 127/393 (32%), Gaps = 28/393 (7%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 P+ + +L + ++ L Q ++ + V CPFH EKTP + K Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTPXLVISPEKN 57 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Y+CF C G + ++ S +V RL AG P + L L Sbjct: 58 LYHCFGCGAAGSVVDWMMKTENFSLPRAVLRLREFAGHN-PSSSAAAVPASPPRQTLTDL 116 Query: 121 IEVATDF-------FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +H +L N+ + L + Sbjct: 117 DDDGQALLGQVVNGYHRNLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSV 176 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 K + L + + + R + S G A GR L Sbjct: 177 SSKEGKRLRDRLTLLGVLRXTTRQDHFRGCLVVPVVGWSESGN-AAQRGRVLQLYGRRTL 235 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 +S ++LY L + + +SS +IL E +D ++ AG +N Sbjct: 236 TDSQIKKG--SARHLY-----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRN 288 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 V+++ G ++ L W R+++ FD D+ G R A G V Sbjct: 289 VIAAFGANSFTADHLAALRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRV 345 Query: 352 LLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVD 383 G D +++ ++ + L +ES + Sbjct: 346 RFPLGLDANAYALKSGNPESAFALALESASRMH 378 >gi|37527577|ref|NP_930921.1| hypothetical protein plu3714 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787012|emb|CAE16086.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1105 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 130/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLVHLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-------------LPVVDPK 106 Y+CF C G L ++ G + +++RL +AG+P P Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAAPPESQA 116 Query: 107 IEKKEKIQTDL----IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 DL L+ DF+H L + + + Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVSHFRLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIRSS-------- 213 L K E + + L G T+ FR ++ PI Sbjct: 177 HHGISGSAGLLPSKDSQEGQQLRGKLSGLGVLRTTTRQDHFRGCVVVPIIGWAESTSVAS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L+ + + +++ Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LSSPLAGVWNEAAMKAAAE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 343 ---ANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|226327183|ref|ZP_03802701.1| hypothetical protein PROPEN_01048 [Proteus penneri ATCC 35198] gi|225204401|gb|EEG86755.1| hypothetical protein PROPEN_01048 [Proteus penneri ATCC 35198] Length = 105 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 33/75 (44%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 PR FI DLL I +LI V ++ N ACCPFH+EKTPSF N K F Sbjct: 23 RIPRSFINDLLARTDIIDLIDARVPLKKQGKNHS-----ACCPFHNEKTPSFTVNSDKQF 77 Query: 62 YYCFSCHVKGDHLSF 76 Y+CF C G+ + F Sbjct: 78 YHCFGCGAHGNAIDF 92 >gi|71898026|ref|ZP_00680231.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] gi|71732270|gb|EAO34325.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] Length = 351 Score = 145 bits (365), Expect = 2e-32, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 5/84 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + L I + ++G+YV R +Y CPFH E+TPSF KGF +CF C Sbjct: 7 QALRARIDLVEVVGRYVTLRRTGA-----EYTGLCPFHHERTPSFTVIPHKGFVHCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92 D + F+ L F E+V++L Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQL 85 >gi|253990781|ref|YP_003042137.1| DNA primase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782231|emb|CAQ85395.1| putative dna primase [Photorhabdus asymbiotica] Length = 1096 Score = 144 bits (362), Expect = 5e-32, Method: Composition-based stats. Identities = 75/366 (20%), Positives = 125/366 (34%), Gaps = 47/366 (12%) Query: 28 DRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 ++ DY CPFH+EKTPS + +K Y+CF C G L ++ G + Sbjct: 15 RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAKNLYHCFGCGAAGSVLDWVIQTEGVTL 74 Query: 86 IESVQRLAAIAGVP----------LPVVDPKIEKKEKIQTDLIR-------LIEVATDFF 128 +++RL +AG+P P+ + + L L+ DF+ Sbjct: 75 KIAIRRLRELAGLPDMDNAVVAASSLAAQPESQAAPLPRPKLADLDDDGQALLRQVIDFY 134 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H +L + + + L K E + + L Sbjct: 135 HQNLLASPEAKEWLERRGLNHPELVSHFKLGYAGHHGIGGSAGLLPSKSSQEGQQLRDKL 194 Query: 189 LIDGDNSATSYD-RFRNRLIFPIRSS--------RGQVIAFGGRTLSKGESVKYLNSPET 239 G T+ FR ++ P+ RG+V+ GR V Sbjct: 195 SGLGVLRTTTRQDHFRGCVVVPVIGWAESASVASRGRVLQLYGRRTQPDYKVLK------ 248 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 K+LY L + + ++S IIL E +D ++ AG +NV+++ G Sbjct: 249 ---DSPKHLY-----LPSPLAGVWNEEAMKAASEIILCEALIDAMTFWCAGFRNVIAAYG 300 Query: 300 -TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 L L R+++ FD D+ G R A + L G V G Sbjct: 301 VNGFNRDHLDALQYHGVKRVLIAFDRDEAGDRGA---ASVAADLLESGIEAWRVQFPPGM 357 Query: 358 DPDSFI 363 D + + Sbjct: 358 DVNDYA 363 >gi|15837107|ref|NP_297795.1| hypothetical protein XF0505 [Xylella fastidiosa 9a5c] gi|15838713|ref|NP_299401.1| hypothetical protein XF2122 [Xylella fastidiosa 9a5c] gi|9105358|gb|AAF83315.1|AE003899_7 hypothetical protein XF_0505 [Xylella fastidiosa 9a5c] gi|9107252|gb|AAF84921.1|AE004027_3 hypothetical protein XF_2122 [Xylella fastidiosa 9a5c] Length = 350 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + L I + L+G+ V R +Y CPFHDE TPSF KGF +CF C Sbjct: 7 QALRARIDLVELVGRSVTLRRTGA-----EYTGLCPFHDEHTPSFTVIPHKGFVHCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 D + F+ L F E+V++L A LP + + ++ Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQLDRGA---LPQAEQQAPRQRPKY 104 >gi|160331765|ref|XP_001712589.1| dnaG [Hemiselmis andersenii] gi|159766038|gb|ABW98264.1| dnaG [Hemiselmis andersenii] Length = 722 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 105/461 (22%), Positives = 189/461 (40%), Gaps = 50/461 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R+FI ++ + +I + +++ A CPFH EK+PSF ND KG Y+C Sbjct: 49 RNFINLIISRLSKL-IIENGIKLEKKGK-----YMVAQCPFHFEKSPSFFVNDKKGVYHC 102 Query: 65 FSCHVKGDHLSF---LSAL---LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL- 117 F C G+ SF L + S ++L + K + + Sbjct: 103 FGCGASGNLFSFQKHLKETTIFKNKNNANSEKKLNNEKFFKAYQKNLLDFKSSDNFSLIS 162 Query: 118 ---IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L++++++FF LK + + L R I ++F++GY+P + L E+L Sbjct: 163 FQEFFLLQLSSEFFLSLLKKSYKPKTL--LQLRNISFGTAKIFQIGYSPPRKKYLFEYLS 220 Query: 175 QKGFS---------------EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 F + + + +D F++R I PIR+ +G VI Sbjct: 221 DLRFPRKKLIKSGIFFFKKKPIEYEKFQKRKSKKLNYYYFDMFQDRFIIPIRNQKGLVIG 280 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 FGGR +SK KYLNS E+ LF K ++++ + + + +N ++LVEG Sbjct: 281 FGGRLISKTNFPKYLNSSESQLFKKNQSIF---------SQIMIINSLKNPPKILLLVEG 331 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDL 337 YMD ++L Q G++ +SLGT+ + +Q+ IV+CFD D+ G + + Sbjct: 332 YMDTMALFQNGLRFSAASLGTSFSFFQINKCRNLCSMKHIVVCFDSDNAGKNGIFLLLKK 391 Query: 338 VLCHLIPGNRVNFVLLSR------GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 + I N+ + +S +DPD F++ G F +I+ + + ++ Sbjct: 392 NFFNPIIQNKTSQFSISEIPSNFFSKDPDDFLQKEGCFNFSNIILNNSIPPMVWFENFLF 451 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 S + + + I ++ Sbjct: 452 LDSRENIFFLNNIFSQINYIKKKFLPLTKKENQYSQIFEKF 492 >gi|71276656|ref|ZP_00652927.1| Zn-finger, CHC2 type [Xylella fastidiosa Dixon] gi|71899153|ref|ZP_00681316.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] gi|71162528|gb|EAO12259.1| Zn-finger, CHC2 type [Xylella fastidiosa Dixon] gi|71731011|gb|EAO33079.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] Length = 351 Score = 143 bits (360), Expect = 8e-32, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + L I + ++G+YV R +Y CPFH E TPSF KGF +CF C Sbjct: 7 QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHHEHTPSFTVISHKGFVHCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 D + F+ L F E+V++L + A LP + + +++ Sbjct: 62 AHHDAIGFVMRYLNVDFREAVRQLDSGA---LPQAEQQTQRQRPEY 104 >gi|329121141|ref|ZP_08249772.1| DNA primase [Dialister micraerophilus DSM 19965] gi|327471303|gb|EGF16757.1| DNA primase [Dialister micraerophilus DSM 19965] Length = 77 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 6/80 (7%) Query: 1 MN-YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + +FI+ + +PI +IG YV ++ +WACCPFH EKTPSF + K Sbjct: 1 MKNFDNNFIQRIKDSLPIEQVIGAYVPLKKKGR-----SFWACCPFHQEKTPSFSVSPDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSA 79 GFY+CF C+ GD +SF+ Sbjct: 56 GFYHCFGCNESGDIVSFVEK 75 >gi|28628139|gb|AAO34622.1| unknown [Erwinia chrysanthemi] Length = 508 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 136/387 (35%), Gaps = 49/387 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + + + Q ++ ++V CPFH E TPS SK Sbjct: 3 RLTPAELEQLKRGVSLRAVAQSQGHRLKKQGADSV----VCRCPFHQENTPSCVITPSKN 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG----------VPLPVVDPKIEKK 110 Y+CF C G L +L ++ +++ RL +AG + P P +K Sbjct: 59 LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASFLAAAPELSSPPASPPRQKL 118 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SR 166 + D L+ DF+H SL + + + + + F+LG+A Sbjct: 119 ADLDDDGQALLHQVIDFYHQSLLASPEAQQ-WLAGRGLTHPELVSHFRLGFAGHHGIGGS 177 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVI 218 L + + AGL + + D FR ++ P+ RG+V+ Sbjct: 178 AGLLPSSSSQEGKRLREKLAGLGVLRATTRQ--DHFRGCVVMPVIGWAESANVAQRGRVM 235 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 GR + + SP K+LY L + + +SS +IL E Sbjct: 236 QLYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCE 281 Query: 279 GYMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAID 336 +D ++ AG +N + T L L R+ + +D D G R A Sbjct: 282 SLIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDAAGDRGAESVA- 340 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFI 363 L G V G D +++ Sbjct: 341 --AELLEAGIEAWRVRFPPGLDANAYA 365 >gi|71898850|ref|ZP_00681018.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] gi|71731436|gb|EAO33499.1| Zn-finger, CHC2 type [Xylella fastidiosa Ann-1] Length = 174 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 8/106 (7%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + L I + ++G+YV R +Y CPFH E TPSF KGF +CF C Sbjct: 19 QALRARIDLVEVVGRYVTLQRTGA-----EYTGLCPFHHEHTPSFTVIPHKGFVHCFGCG 73 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 D + F+ L F E+V++ + A LP + + +++ Sbjct: 74 AHHDAIGFVMRYLNVDFREAVRQFDSGA---LPQAEQQTQRQRPEY 116 >gi|37527449|ref|NP_930793.1| hypothetical protein plu3580 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527458|ref|NP_930802.1| hypothetical protein plu3589 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786884|emb|CAE15953.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786893|emb|CAE15962.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1104 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 131/392 (33%), Gaps = 53/392 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RIPDTDLAHLKQTVSLLGLA------RKQGRTMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109 Y+CF C G L ++ G + ++RL +AG+P P+++ Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIGIRRLRELAGLPDMDNAVVAASSLAAQPELQA 116 Query: 110 KEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 + L L+ DF+H L + + + Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLERRGLNHPELVSHFKLGYAG 176 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD-RFRNRLIFPIR--------SS 213 L K E + + L G T+ FR ++ P+ +S Sbjct: 177 HHGIGGSAGLLPSKSSQEGQQLRDKLSGLGVLRTTTRQDHFRGCVVVPVIGWTESVNVTS 236 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 RG+V+ GR V K+LY L + + +S+ Sbjct: 237 RGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNESAMQASNE 282 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAA 331 IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R A Sbjct: 283 IILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLEALQYHGVKRVLIAFDRDEAGDRGA 342 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 L G V G D + + Sbjct: 343 TSVA---ADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|37527561|ref|NP_930905.1| hypothetical protein plu3697 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786996|emb|CAE16070.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1104 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 131/394 (33%), Gaps = 57/394 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLARLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109 Y+CF C G L ++ G + +++RL +AG+P P+ + Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAALPESQA 116 Query: 110 KEKIQTDLIR-------LIEVATDFFHHSL-----------KNARDKRLHYYLDERGIDS 151 + L L+ DF+H L + + + G Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVNHFKLGYAG 176 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 H G P +HLR K S ++ D + Sbjct: 177 HHGIGGSAGLLPSKSSQEGQHLRDK-LSGLGVLRTTTRQDHFRGCVVVPVIGWAESASV- 234 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 +SRG+V+ GR V K+LY L + + ++ Sbjct: 235 ASRGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEAAMKAA 280 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLR 329 + IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R Sbjct: 281 AEIILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLDALQYHGVKRVLIAFDRDEAGDR 340 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 341 G---VANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|251789525|ref|YP_003004246.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591] gi|247538146|gb|ACT06767.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591] Length = 1084 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 132/393 (33%), Gaps = 48/393 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + + + Q ++ Y CPFH E TPS SK Sbjct: 3 RLTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118 Y+CF C G L +L ++ +++ RL +AG + + L Sbjct: 59 LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGTASSLAAAPALSSPPVPPRQKLA 118 Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167 L+ F+H SL ++ + + + + F+LG+A Sbjct: 119 DLDDDGQALLNQVIHFYHQSLLDSPEAQQ-WLAGRGLSHPELVSHFRLGFAGHHGIGGSA 177 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219 + + + AGL + + D FR ++ P+ RG+V+ Sbjct: 178 GVLPSSSSQEGKRLREKLAGLGVLRAATRQ--DHFRGCVVMPVIGWSESASVAQRGRVMQ 235 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 GR + + SP K+LY L + + +SS +IL E Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCES 281 Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337 +D ++ AG +N + T L L R+ + +D D+ G R A Sbjct: 282 LIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGAESVA-- 339 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 L G V G D +++ G Sbjct: 340 -AELLEAGIEAWRVRFPPGLDANAYALKSGHPE 371 >gi|293376955|ref|ZP_06623170.1| DNA primase family protein [Turicibacter sanguinis PC909] gi|292644436|gb|EFF62531.1| DNA primase family protein [Turicibacter sanguinis PC909] Length = 413 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 10/124 (8%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + L + I +I YV ++ N Y CPFHDEKTPSF + K Y Sbjct: 282 ISPHLTRHYLSQLDIVEVISDYVKLEKSGKN-----YKGICPFHDEKTPSFVVSKEKQIY 336 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 CF C G+ ++F++ + SF +++ L + V KE ++T L E Sbjct: 337 KCFGCGEGGNAINFIANIENISFKQALFLLKDKYNLKEYEV-----VKEPLKTRLDNASE 391 Query: 123 VATD 126 Sbjct: 392 KTKR 395 Score = 102 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 79/319 (24%), Positives = 136/319 (42%), Gaps = 32/319 (10%) Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + +L++ A + + SL N K YL ERGI +I+ F++G+ S L+ K Sbjct: 1 MKKLLDEANNIYQKSLLNN--KEQLEYLMERGITLESIKEFEIGF---SDSFCLNELKAK 55 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 L G + +R NR++FPIR +G++ F GRT+ VKYL S Sbjct: 56 HQD-------DLKALGLLNDRGGERNWNRIMFPIRDCKGEICGFNGRTVDVNNDVKYLLS 108 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PE++ F K K LYN A Y++ + + +VEG +DV++ Q G++NVV Sbjct: 109 PESMGFSKTKTLYNLDRAKKYIK----------EKNEVHIVEGILDVVAYHQNGIKNVVC 158 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV----- 351 +LGTALT+ + +L + + + +DGD G +A+ + + Sbjct: 159 TLGTALTKEHIDMLKPHAEKFIFGYDGDYAGFKASITNARFLSSVMREEVENYKATENIK 218 Query: 352 --LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 + DP ++ K+I + + N + E+ + + + Sbjct: 219 FSMFPENSDPCDCLKFE--DQLLKIINDPKDYYTYCRTKCELNSIYEKVFEKVDRKEKIT 276 Query: 410 NCINHIKDQKLRYYYSQAI 428 I I L +Y + Sbjct: 277 EEIKEI-SPHLTRHYLSQL 294 >gi|118588969|ref|ZP_01546376.1| DNA primase [Stappia aggregata IAM 12614] gi|118438298|gb|EAV44932.1| DNA primase [Stappia aggregata IAM 12614] Length = 421 Score = 141 bits (354), Expect = 4e-31, Method: Composition-based stats. Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 2/127 (1%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y + + + PIS +IG++V WDR KT+A GD+WACCPFH E +PSFHC D + Sbjct: 22 RYSEAEKERVKSNNPISTIIGRHVTWDRAKTSANAGDFWACCPFHAENSPSFHCVDREHR 81 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--PVVDPKIEKKEKIQTDLIR 119 Y CF C GD +FL + G SF+E+++RL A P + + + + + Sbjct: 82 YKCFGCGATGDQFTFLQNVEGLSFVEAMERLGGNAEAEPLSPEKIAEDKARAEDKRREQE 141 Query: 120 LIEVATD 126 A Sbjct: 142 AFAEARR 148 >gi|37527569|ref|NP_930913.1| hypothetical protein plu3705 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787004|emb|CAE16078.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 1104 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 131/394 (33%), Gaps = 57/394 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSK 59 P + L + + L ++ DY CPFH+EKTPS + +K Sbjct: 3 RVPDTDLVHLKQTVSLLGLA------RKQGRPMKKRGEDYVLRCPFHNEKTPSMVISPAK 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPVVDPKIEK 109 Y+CF C G L ++ G + +++RL +AG+P P+ + Sbjct: 57 NLYHCFGCGAAGSVLDWVIQTEGVTLKIAIRRLRELAGLPDMDNAVVAASSLAALPESQA 116 Query: 110 KEKIQTDLIR-------LIEVATDFFHHSL-----------KNARDKRLHYYLDERGIDS 151 + L L+ DF+H L + + + G Sbjct: 117 APLPRPKLADLDDDGQALLHQVIDFYHQHLLASPEAKAWLARRGLNHPELVNHFKLGYAG 176 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 H G P +HLR K S ++ D + Sbjct: 177 HHGIGGSAGLLPSKSSQEGQHLRDK-LSGLGVLRTTTRQDHFRGCVVVPVIGWAESASV- 234 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 +SRG+V+ GR V K+LY L + + ++ Sbjct: 235 ASRGRVLQLYGRRTQPDYKVLK---------DSPKHLY-----LPSPLAGVWNEAAMKAA 280 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLG-TALTEYQLRLLWKL-SPRIVLCFDGDDPGLR 329 + IIL E +D ++ AG +NV+++ G L L R+++ FD D+ G R Sbjct: 281 AEIILCEALIDAMTFWCAGFRNVIAAFGVNGFNREHLDALQYHGVKRVLIAFDRDEAGDR 340 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ L G V G D + + Sbjct: 341 G---VANVAADLLEAGIEAWRVQFPPGMDANDYA 371 >gi|218265562|ref|ZP_03478826.1| hypothetical protein PRABACTJOHN_04537 [Parabacteroides johnsonii DSM 18315] gi|218221454|gb|EEC94104.1| hypothetical protein PRABACTJOHN_04537 [Parabacteroides johnsonii DSM 18315] Length = 350 Score = 140 bits (353), Expect = 5e-31, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 131/329 (39%), Gaps = 46/329 (13%) Query: 51 PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110 PS N+ KG + C++C +GD +F+S + F E+ +RL + + IE+K Sbjct: 1 PSLSVNEEKGSFVCYACGERGDVFAFVSKIEKVGFAEAAKRLTKE--LTIENGQLTIERK 58 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170 + +A + + + + L Sbjct: 59 DNK--------------------DAGALPERLSVVDSRLSVENEVFLAM---------LL 89 Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 ++ G+ + RNRL+FP+R G+++ F R LS + Sbjct: 90 PAGSGCPELTPTWLDFGVGQSPFLVPERWKAMRNRLVFPVRDEEGRLVGFAARRLSDEDR 149 Query: 231 --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KY+NS L+ K + LY + A +++ + LVEGY DVL++ Sbjct: 150 DKPKYINSETGELYRKSELLYGLYEAREAIRR----------EGSVFLVEGYKDVLAMHA 199 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 AG ++ V+ GTAL + LL + + + + D D G +A +V + G V Sbjct: 200 AGFRHTVALCGTALCTGHIALLKRYTTSVRVMLDADKAGRKATDA---IVPTLVGEGMEV 256 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 + L G+DPDS R GK AF + E Sbjct: 257 VRIGLPEGDDPDSLFRRLGKEAFAAYVRE 285 >gi|242237764|ref|YP_002985945.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703] gi|242239428|ref|YP_002987609.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703] gi|242129821|gb|ACS84123.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703] gi|242131485|gb|ACS85787.1| zinc finger CHC2-family protein [Dickeya dadantii Ech703] Length = 1086 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 107/704 (15%), Positives = 205/704 (29%), Gaps = 114/704 (16%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + + + Q ++ Y CPFH E TPS SK Sbjct: 3 RMTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA--IAGVPLPVVDPKIEKKEKIQTDLI 118 Y+CF C G L +L ++ +++ RL + L + L Sbjct: 59 LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASSLAAAPALSSPPAPPRQKLA 118 Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167 L+ F+H SL + + + + F+LG+A Sbjct: 119 DLDDDGQALLNQVIQFYHQSLLAS-AEAQQWLAGRGLAHPELVSHFRLGFAGHHGIGGSA 177 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219 L + + AGL + + D FR ++ P+ RG+V+ Sbjct: 178 GLLPSSSSQEGKRLREKLAGLGVLRSATRQ--DHFRGCVVMPVIGWSESASVAQRGRVMQ 235 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 GR + + SP K+LY L + + +SS +IL E Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEDALKASSEVILCES 281 Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337 +D ++ AG +N + T L L R+ + +D D+ G R A + Sbjct: 282 LIDAMTFWCAGYRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGA---ASV 338 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLIVESLPLVDM------------ 384 L G V G D +++ + + L +E + Sbjct: 339 AAELLEAGIEAWRVRFPPGLDANAYALNSGSPESALGLALEQAQWMGNGSGPGVVFSHET 398 Query: 385 ------------------------------LWKRETENRSFNTPDERAELEIHLKNCINH 414 R + + + Sbjct: 399 VVTDGREPSSLAAPAGVPAPMVAGELTASGDLLLTHGPRVWRVRGWQKNTVAEVMKVNVQ 458 Query: 415 IKDQKLRYYYSQAI-----RDR---LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++D+ Y ++ R R + + E S R + +QK R Sbjct: 459 VRDESTGALYVDSLDLYSSRQRQGYVSAAAAELGCEASVIKRECGRVLLMLEQKQDDVRQ 518 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + EA L L+ P + +LA L + + Sbjct: 519 AAEQAERAPAVTVSAEEEADALA-LLKSPDLAARIVDDLAACGVVGESTN-LLTGYLAAT 576 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT----------EANIVDVRQ 576 + + Q G L++ + + + + E ++ Sbjct: 577 SRKLDKPLAVLIQSSSAAGKSSLMEAVLGMMPEEERIQYSAMTGQSLYYLGETSLQHKIL 636 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + + + L + + E +IA + G+ E++ L++ Sbjct: 637 AIAEEEGVRQAAYALKLLQSDGELKIA---STGKNEQSGELVTR 677 >gi|76799604|ref|ZP_00781724.1| DNA primase [Streptococcus agalactiae 18RS21] gi|76585039|gb|EAO61677.1| DNA primase [Streptococcus agalactiae 18RS21] Length = 383 Score = 138 bits (348), Expect = 2e-30, Method: Composition-based stats. Identities = 82/414 (19%), Positives = 159/414 (38%), Gaps = 36/414 (8%) Query: 216 QVIAFGGRTLSKGE----SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 + AF GR ++ + KY NS T +F+K LY+ A + K + Sbjct: 2 KSFAFSGRVWTQEDIDRNQAKYKNSRATPIFNKSYELYHLDKARAVINK----------A 51 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 + L+EG+MDV++ +AG++NVV+S+GTALT +R L + + ++VL +DGD G A Sbjct: 52 HEVYLMEGFMDVIAAYRAGIENVVASMGTALTNEHVRHLKRFTKKVVLTYDGDRAGQNAI 111 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 K+++L+ V+ V + DPD F++ F++L+ + + Sbjct: 112 DKSLELL-----SDMTVDIVRIPNKMDPDEFLQANSAEDFKQLLENGRISNTEFYIHYLK 166 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 + + + I + Y + + L + + R Sbjct: 167 PENTDNLQSEIAYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQVEQSVNNERLHH 226 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 ++ + + +Q L + + E L L+NHP +L E + +D Sbjct: 227 RSQQQASSSVQTSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNEFRNR-DNFYFD 283 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 E+Q L+ L + + +++R E +I Sbjct: 284 TTEIQVLYELLKESGE-------------ITSYDLSQESDKVNRTYYIILEEQLPVEVSI 330 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + ++A + R L +Q + I + Q +G LI+ + Sbjct: 331 GEI-EAVEKARDRLLKERDLRKQSQLIRQSSNQGDEEGALAALENLIAQKRNME 383 >gi|157695026|gb|ABV66102.1| DNA primase [Rickettsiella melolonthae] Length = 192 Score = 138 bits (347), Expect = 3e-30, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 101/195 (51%), Gaps = 7/195 (3%) Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 V G+ SFL SF+E+V LA G+ +P E K ++L L+E F+ Sbjct: 2 VGGNAFSFLMEYEKLSFVEAVNSLAEQIGMEVPQHSKNQEIYYKASSNLYGLLEEVAQFY 61 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L+ + YL +RG+ + F LGYAP + +L + E + AGL Sbjct: 62 AKELR--HNTLAINYLKQRGLSGEIAKRFNLGYAPAAWDTLLKTFN----DTENLFAAGL 115 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 L+ YDRFR+R++FPIR RG+VI FGGR L++ + KYLNSPET LFHKGK L Sbjct: 116 LVKKSEGQGYYDRFRDRILFPIRDRRGRVIGFGGRVLTQ-QEPKYLNSPETTLFHKGKEL 174 Query: 249 YNFFGALNYLQKSIR 263 Y + ++ R Sbjct: 175 YGLYETFQANRQVER 189 >gi|126640890|ref|YP_001083874.1| DNA primase [Acinetobacter baumannii ATCC 17978] gi|126386774|gb|ABO11272.1| DNA primase [Acinetobacter baumannii ATCC 17978] Length = 451 Score = 137 bits (345), Expect = 5e-30, Method: Composition-based stats. Identities = 121/492 (24%), Positives = 212/492 (43%), Gaps = 60/492 (12%) Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 K+L Y +RG+ I+ ++LGYAP+ HL + + + ++ LI +S Sbjct: 13 KKLKNYFKQRGLSDQTIQFWRLGYAPEDWQ----HLEKAFPYDIEGLKQLGLIRSSDSGR 68 Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257 +D R+R+IFPIR +G+V+ FGGR L+ KY+NSP++ +FHK + LY + Sbjct: 69 DFDLLRDRVIFPIRDPKGRVVGFGGRALNDEIKPKYINSPDSEVFHKNQLLYGLYEGRKL 128 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI 317 ++ ++VEGYMDV++L Q G+ V++LGTA L +L+K + RI Sbjct: 129 ------------KANDWLMVEGYMDVIALQQYGITGAVATLGTASNTEHLNILFKQNNRI 176 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 + FDGD G +AA + ++L L L G + F +L DPDS IR G F+KL+ + Sbjct: 177 TIAFDGDVAGQKAARRTLELALPLLNDGRELKFFVLPNDHDPDSLIRREGVENFQKLLQQ 236 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQLF 436 + L D ++ T +TP+ ++ + L+ + RY +Q+ R++L Sbjct: 237 APLLSDFVFAHLTGQHDISTPEGKSLVMGELRELTELLPKQGSFRYLLTQSFREKLGL-- 294 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 R S S ++ K E + L++HP Sbjct: 295 ------------------GKRFTPQISHDASLSFNIQTKD-------EDFAIAILMHHP- 328 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 L ++ L + L K+ + L F E +E+ ++ Sbjct: 329 FLYIHFEGLRAYIPQDELLAKILAILNRIFDELP--DDQELATYYVLGACSSYCHEIADI 386 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 ++ + + +V + AL + R L ++ + + ++ Sbjct: 387 MQRTNIQAL---TQAPEVADKLAKEYALGLQERYLRQKLKSKISLV----------ESRN 433 Query: 617 LISILHEVHIQI 628 L L+E+ QI Sbjct: 434 LRQQLNELTKQI 445 >gi|325914964|ref|ZP_08177296.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] gi|325914983|ref|ZP_08177315.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] gi|325538857|gb|EGD10521.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] gi|325538876|gb|EGD10540.1| DNA primase [Xanthomonas vesicatoria ATCC 35937] Length = 352 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 5/95 (5%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + ++ L + + ++ +YV R ++ CPFH+E +PSF SKG Sbjct: 1 MTHNKIDVEQLKAAVDLVAVVERYVQLRRTGK-----EHAGLCPFHNESSPSFTVIPSKG 55 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95 F +CF C D + FL A+ GC F E+ +L A Sbjct: 56 FVHCFGCGAHFDVIGFLMAITGCDFHEACVQLGAQ 90 >gi|251789531|ref|YP_003004252.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591] gi|247538152|gb|ACT06773.1| zinc finger CHC2-family protein [Dickeya zeae Ech1591] Length = 1118 Score = 135 bits (338), Expect = 3e-29, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 131/386 (33%), Gaps = 48/386 (12%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 ++ L + + + Q ++ Y CPFH E TPS SK Sbjct: 3 RMTPAELEQLKRGVSLRAVAQSQGHTLKKQGA----DSYVCRCPFHQENTPSCVITPSKN 58 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLI 118 Y+CF C G L +L ++ +++ RL +AG + + L Sbjct: 59 LYHCFGCGASGSVLDWLQHTERLTYPQTLLRLRELAGSASSLAAAPALSSPPVPPRQKLA 118 Query: 119 R-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRY 167 L+ F+H SL + + + + + F+LG+A Sbjct: 119 DLDDDGQALLNQVIGFYHQSLLASPEAQQ-WLAGRGLNHPELVSHFRLGFAGHHGIGGSA 177 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS--------RGQVIA 219 L + + AGL + + D FR ++ P+ RG+V+ Sbjct: 178 GLLPSSSSQEGKRLREKLAGLGVLRAATKQ--DHFRGCVVMPVIGWAESASVAQRGRVMQ 235 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 GR + + SP K+LY L + + +SS +IL E Sbjct: 236 LYGRRVQPDHKI-LKGSP--------KHLY-----LPSPLAGVWNEEALKASSDLILCES 281 Query: 280 YMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAIDL 337 +D ++ AG +N + T L L R+ + +D D+ G R A + Sbjct: 282 LIDAMTFWCAGFRNVTTAYGANGFTADHLAALQYHGVKRVQIAYDRDEAGDRGA---ASV 338 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI 363 L G V G D +++ Sbjct: 339 AAELLEAGIEAWRVRFPPGLDANAYA 364 >gi|304393959|ref|ZP_07375883.1| virulence-associated protein E [Ahrensia sp. R2A130] gi|303293934|gb|EFL88310.1| virulence-associated protein E [Ahrensia sp. R2A130] Length = 358 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 5/111 (4%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KG 60 + L PIS +IG++V++ +K+ KGD+WA C FH EK+PS H D K Sbjct: 3 RIDAHELARLKADTPISEIIGRHVNFCPKKSQPAKGDFWANCVFHGEKSPSLHVVDQGKN 62 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 F++CFSC KGD ++FL LG SF+++ + L G EK+ Sbjct: 63 FFHCFSCGAKGDAITFLQEHLGLSFMDAAKEL----GADPDRELTDDEKRA 109 >gi|217077378|ref|YP_002335096.1| DNA primase [Thermosipho africanus TCF52B] gi|217037233|gb|ACJ75755.1| DNA primase [Thermosipho africanus TCF52B] Length = 457 Score = 133 bits (335), Expect = 7e-29, Method: Composition-based stats. Identities = 102/546 (18%), Positives = 216/546 (39%), Gaps = 91/546 (16%) Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 +E++++LA AGV + + + + L + K YL Sbjct: 1 MEALKKLANEAGVKIEYSSSNSFQ-----QLYFNFYKEIHKEYMEKLFDE--KIALDYLF 53 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 RG I+ ++ G++P + ++ ++ + +++D+F R Sbjct: 54 SRGFSEEEIKEYEFGFSPINSKIPQKIAQK----------LDIKSLKKFGFSTHDQFEGR 103 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265 LI PI++ VIAFGGR L +G+ KYLNS ET F K K L+ A + ++ Sbjct: 104 LIIPIKNEYSNVIAFGGRLLGEGQP-KYLNSYETDFFKKSKTLFLLDIAKDKIK------ 156 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 ++ F I+ EGY D ++ +A +N V++LGT+ T++ + KL+ ++L FD D Sbjct: 157 ----TADFAIICEGYFDAIAFHRADFKNAVATLGTSFTKFHAFSIKKLTQNVILAFDTDS 212 Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML 385 G++AA ++I +++ V ++ +DPD + G + + E++P + + Sbjct: 213 AGIKAALQSIKILISMQ---FNVMVAGKTKEKDPDEIYKTQGSSGLYSFLKEAIPAEEFI 269 Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 ++N N + +KN ++ + + +++ Sbjct: 270 PYVLSKNYDLNNSNAIPLYTREIKNWEKIFENFPEKLETFRKTAEKI------------- 316 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 S+ + S+ K K + ++ L+N+P + Sbjct: 317 -----------------SKTSITVSVPKPKQKTNLPTLDEMVIYLLLNNPQV-------- 351 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 DI + +L K F E++ + L + +L ++++ Sbjct: 352 -DIEINPKIFNELTQEFIKSLKNLKNFSFEKLSKDLQ-KYIENILNKMEKF--------- 400 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 ++ + Y + + L ++ EEI+K + T E+ +L+ E+ Sbjct: 401 -------EINEDYINTVKKKIEEKTLEKRIEEIDKYLNSAT----EEEKRVLLQTRMELV 449 Query: 626 IQIHQI 631 ++ ++ Sbjct: 450 RKLKKL 455 >gi|124515194|gb|EAY56705.1| DNA primase [Leptospirillum rubarum] Length = 461 Score = 133 bits (334), Expect = 9e-29, Method: Composition-based stats. Identities = 114/496 (22%), Positives = 187/496 (37%), Gaps = 43/496 (8%) Query: 94 AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSH 152 AG+PLP + + + ++ + SL ++ ++ YL E R + Sbjct: 3 DQAGIPLPSGNG-----QDRRKACFQIFRETESIYRKSLSSSGAEQARKYLHETRRLKPV 57 Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212 +E F LG++ L + K + S + FRNR++ PIR Sbjct: 58 TMERFGLGWSMPGS------LLKSMAPSRKKEAEEYGLLKQGPGGSREFFRNRIMVPIRI 111 Query: 213 SRGQVIAFGGRTLSKG-ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 G +AFGGR L + KYLNSPE F K + L+ A ++K R Sbjct: 112 ENGATVAFGGRVLPGNAQGPKYLNSPEHPFFRKKEILFGLDQAGPAIEKKRR-------- 163 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 +++VEGY DV++L +AGV+ VV+ LGTALT+ L L +L+ +V+ FDGD G A Sbjct: 164 --VLVVEGYFDVMALSEAGVEAVVAPLGTALTQAHLIHLSRLADEVVVVFDGDRAGQTAI 221 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 + D + + L G+DPD +IR G+ F + I +++PL D + Sbjct: 222 ARLADRFVLDSR--ISIRAFSLPEGKDPDEWIREVGRDFFLESIEKAIPLADFVVDLFDI 279 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 R L + I D + ++ + Sbjct: 280 QLKSADATTRNHLLESFYDLAKRIPDPEAIDHFLSRGASVFRINKDLLAQGLFREESLSP 339 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIR 509 + ++ + S L E L+L L+ ++ L+ Sbjct: 340 REIPRQNSRETSSNR--------------HLMERNLVLELVRLWTDSLDPHPSDRLSPGD 385 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATT 567 +D L +F+ + K L E E+ Q LDR+ R L Sbjct: 386 FDFLSSGSLLTFVRDLWKNGKTNPETVRDMILKEPLLAEVWMQLPLDRETRPRRLEDLVF 445 Query: 568 EANIVDVRQGYQQALA 583 + + R+ AL Sbjct: 446 RVSRMSKRERLSAALK 461 >gi|206603676|gb|EDZ40156.1| DNA primase [Leptospirillum sp. Group II '5-way CG'] Length = 461 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 117/496 (23%), Positives = 193/496 (38%), Gaps = 43/496 (8%) Query: 94 AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE-RGIDSH 152 AG+PLP + + ++ A F SL ++ ++ YL E R + Sbjct: 3 DQAGIPLPSGNGHD-----RRKACFQICREAESIFRKSLSSSGAEQARKYLHETRRLKPV 57 Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212 +E F LG++ ++ + + FRNR++ PIR Sbjct: 58 TVERFGLGWSMPGALLKSMPYLKQK------EAIEYGLLKQVPGGPREFFRNRIMVPIRI 111 Query: 213 SRGQVIAFGGRTLSKGES-VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 G +AFGGR L KYLNSPE F K + L+ A ++K R Sbjct: 112 ENGASVAFGGRVLPGNSQGPKYLNSPEHPFFRKKEILFGLDQAGPAIEKKRR-------- 163 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 +++VEGY DV++L +AGV+ VV+ LGTALT+ L L +L+ +V+ FDGD G A Sbjct: 164 --VLVVEGYFDVMALSEAGVEAVVAPLGTALTQSHLIHLSRLADEVVVVFDGDKAGQTAI 221 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 + D + + L G+DPD +IR G+ F + I +++PL D + Sbjct: 222 ARLADRFVLDSR--ISIRAFSLPEGKDPDEWIREVGRDFFMESIEKAIPLADFVVDLFDI 279 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 R L + I D + ++ + + G + + Sbjct: 280 QLKTADTTTRNHLLESFYDLAKRIPDPEAIDHFLSR-----GASVFRLNKDLLAQGLFRE 334 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIR 509 ++ R+ G R ++S L E L+L L+ ++ + L+ Sbjct: 335 ESLSPRETPGQKSR---------EMSSNRDLMERNLVLELVRLWTDSLDPHPSERLSPGD 385 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ--LDRQVRDAGLWSATT 567 +D L +F+ + K L E E+ Q LDR+ R L Sbjct: 386 FDFLSSGSLLTFVRELWRNGKTNPDIVQDMILKEPLLAEVWMQLPLDRETRPRRLEDLVF 445 Query: 568 EANIVDVRQGYQQALA 583 + + R+ AL Sbjct: 446 RVSRMSKRERLSAALK 461 >gi|317126225|ref|YP_004100337.1| DNA primase catalytic core domain [Intrasporangium calvum DSM 43043] gi|315590313|gb|ADU49610.1| DNA primase catalytic core domain [Intrasporangium calvum DSM 43043] Length = 499 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 127/386 (32%), Gaps = 53/386 (13%) Query: 5 RDFIK--DLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + PI+ ++ VD R + CCPFHD+ +PS + Sbjct: 4 PSTVDFARIRSEHPIAEVVAASGVDLQPRG-----HGWVGCCPFHDDSSPSMTVDAIPDR 58 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL---- 117 ++CF C GD + F+ + G ++V L GV P + + L Sbjct: 59 FHCFGCGATGDVVDFVGRMHGLGVRDAVAFL-DTGGV------PTAAPAARPRLRLVRDH 111 Query: 118 ----------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK------LGY 161 + +A + L + + GY Sbjct: 112 DRPPVTPDRAFEINALAWNH----LGSPTAGWFASKFLWHARGIDLTALRAETGVELAGY 167 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 A SL + LR G S+++++ L + D R RLIFPI G++ F Sbjct: 168 ASHDWTSLTDRLRADGVSDDELLALDLSQRARTG-SLIDTLRGRLIFPITEPDGRIRGFI 226 Query: 222 GR-TLSKGESVKYLNSPETILFHKGKNLY---NFFGALNYLQKSIRKDVRRNSSSFIILV 277 GR T + KY N T + KG LY + A + + + + + Sbjct: 227 GRDTTGNPPAPKYRNPTRTPVHDKGDVLYRATHHRLAADGHVVVVEGVLDALALTAAAAE 286 Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDL 337 EG D ++ V +S T + ++L + DGD G + L Sbjct: 287 EGLTDRIAA-------VTASGVTVSSAQAEQVLALSDNPPRIALDGDQAGRDGTDR--WL 337 Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFI 363 L L G DP ++ Sbjct: 338 TALSLDRDRPTLVTTLPEGTDPAEWL 363 >gi|330040533|ref|XP_003239946.1| DNA primase [Cryptomonas paramecium] gi|327206872|gb|AEA39048.1| DNA primase [Cryptomonas paramecium] Length = 675 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 139/380 (36%), Gaps = 40/380 (10%) Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---L 81 V ++ Y CPFH EKTPSFH KG YYCF C G+ +F+ + Sbjct: 51 VKIKKKGK----TSYVTLCPFHQEKTPSFHIEQEKGLYYCFGCGESGNLYTFVKKINQKK 106 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT------DLIRLI--EVATDFFHHSLK 133 F ++ + L + +K KI + + DF+ Sbjct: 107 HTRF----EK--DLIHDVLYYFNQTKKKFSKINRNNSHLVSYQSVFFIKTECDFYEKFFH 160 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 L+ + Y G + +I + Sbjct: 161 RDMKLTLYTETRGLSNSILKLYKIGYSYVFKKNDLNIYGF---GLNTSNLISETNYRSIN 217 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETILFHKGKNLYNFF 252 S N+++ PI + +G I FG R+ + KY+NS ++ +F K + +Y+ + Sbjct: 218 LLEKSVQ---NKVVMPIFNEKGIAIGFGKRSTENLTKISKYINSQDSPIFKKQRCIYSSY 274 Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312 + + ILVEGYMD +L Q G++ ++SLGT + ++ L+ Sbjct: 275 HFKIVNKFKPKIG---------ILVEGYMDFTNLTQNGIRFCMASLGTNVNNSHIQKLFS 325 Query: 313 LSPR--IVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 + I++ FD D PGL + I +L + +F + +DPD + G Sbjct: 326 FNKNKHIIISFDCDRPGLASTRTIISNLFYFIKNYQFKTSFSYFNVHKDPDELVYFKGGN 385 Query: 370 AFEKLIVESLPLVDMLWKRE 389 F + + + + Sbjct: 386 FFTTFTLNYIKPGLIWIETL 405 >gi|126640891|ref|YP_001083875.1| DNA primase [Acinetobacter baumannii ATCC 17978] gi|126386775|gb|ABO11273.1| DNA primase [Acinetobacter baumannii ATCC 17978] Length = 165 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%) Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 + + Y CCPFH EKTPSFH K +Y+CF C G+ + FL + + Sbjct: 1 MKLKKTGR-----TYSGCCPFHQEKTPSFHVYRDKQYYHCFGCQANGNAIRFLMDIDNRN 55 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 FI+ ++ L++ GV LP + +K + Sbjct: 56 FIDVMKELSSNTGVELPKDNTDNKKLSYTRQ 86 >gi|23013685|ref|ZP_00053553.1| COG0358: DNA primase (bacterial type) [Magnetospirillum magnetotacticum MS-1] Length = 314 Score = 129 bits (324), Expect = 1e-27, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 111/299 (37%), Gaps = 13/299 (4%) Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 ++ L PG + F L EDPDS I+ G A ++ + +V++ W+ ENR Sbjct: 12 LERAFPILKPGLSLRFAALPSPEDPDSLIKARGPAAMATVLDSAQAMVEVAWRLALENRP 71 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 +TP+ RA L+ L I D+ +R+ Y R + + F+ + K + Sbjct: 72 LDTPEARALLDKDLAEKAFSIADEAVRFQYLATFRQKAKDHFRPKWEPRKSGSGFGKPSG 131 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSL----REAALLLTLINHPAILQEQYQELADIRY 510 R + L + P +E +L +++HP ++ + L + + Sbjct: 132 RFGGPPQAPLKGPDGLLPGAGRPRPPQPNSGAQEWMMLALVLDHPRLMDSIGERLGETTF 191 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + L L + + + + L G+ E+L + L + + + Sbjct: 192 TDKTLDNLRRGILKHLGAARDLDADGLATHLRTDGYSEILDHFL-DTNERRLRALRGDLS 250 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + R ++ LY R +++ +++ A+ TA S V Q Sbjct: 251 TEEARTHWEHVYNLYTR--------KDLLADVSEANAELAQGPTAASWSRFEAVKKQQQ 301 >gi|282890658|ref|ZP_06299181.1| hypothetical protein pah_c022o283 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499655|gb|EFB41951.1| hypothetical protein pah_c022o283 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 463 Score = 128 bits (321), Expect = 3e-27, Method: Composition-based stats. Identities = 107/492 (21%), Positives = 193/492 (39%), Gaps = 48/492 (9%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL +RGID I+ FK+G+AP LR+ L + S++ ++EAGL+I+ D Sbjct: 1 MQYLYKRGIDLAFIQHFKIGFAPP-FGMLRKVLHARSISDDAMLEAGLIIETKEGKKK-D 58 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQ 259 F +R++FPI G VI F GR + KY+N+ ET LF K + L+ + Sbjct: 59 FFYDRILFPIHHPTGGVIGFSGRKFKEETFGGKYVNTAETPLFKKSRVLFGLNYCRKRIA 118 Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319 K R I+VEG +D L L +G V+ GTA E ++ L +L ++V Sbjct: 119 KERRA----------IIVEGQVDALRLIYSGFNMTVAGQGTAFGEGHVKELMQLGVQVVY 168 Query: 320 CF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 D D G AA + G V V L G DPD F+R G +F+ L+ +S Sbjct: 169 LALDPDGAGQEAA---AKIGNLFQKEGVDVKIVALPLGMDPDIFLREKGPESFQILLQKS 225 Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438 + + L ++ + +P ++EL + I + + + + +Q + Sbjct: 226 VDYLSFLVTHLSKKFNSASPAGKSELVQTVTEQIQKWNHPVMVHESLRQLAHLMQV--PE 283 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI----NH 494 + R + G + ++ + E LL ++ H Sbjct: 284 NMVNQGVLPRSSHAFMKKGASIGTAAQVDPD-----------RILECDLLRWMLLMGETH 332 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 P ++ L + + +L++ + QK + + + L+ ++ Sbjct: 333 PHFIEMVCLNLKVEDFYHLVCGRLFTAFLEGYKNQKVPDLLSLAIAIDDEEGQTLISEIL 392 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + D +GY + R + +EEI+ +I + + ++ Sbjct: 393 EKKINK------------DKAEGYFKETVQRILDRNWMKMREEIKMKIQ--SGQLSDDEA 438 Query: 615 AILISILHEVHI 626 L E+ Sbjct: 439 LDLAKRFDELKR 450 >gi|225629744|ref|ZP_03787698.1| DNA primase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591402|gb|EEH12488.1| DNA primase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 295 Score = 128 bits (320), Expect = 4e-27, Method: Composition-based stats. Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 34/317 (10%) Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 SPE+ LF KG+NLY AL+ ++K I +VEGYMDV++L QA + N V Sbjct: 1 SPESQLFKKGENLYGLNFALSEIRKK----------QHIFVVEGYMDVIALHQAEISNTV 50 Query: 296 SSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 + LGTA++ Q++ LWK + I +C DGD G AA + +L L L PG + FV L Sbjct: 51 APLGTAISAEQIKNLWKFAKEISICMDGDSAGRHAATRVAELALLILEPGYTLKFVTLPS 110 Query: 356 GEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERAELEIHL 408 +DP Y K + S L +N P++ + LE Sbjct: 111 NKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHMIDSNLQNYEKLAPEKYSILEHKF 170 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 +N I + +R YY ++ +E + N++ KG Sbjct: 171 MEYVNTISNSSIRRYYRDYFYNK--------SSELRSSFKKQIFNSKTGATKGEYLHNKS 222 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDF 526 L++ + + +A +L + P IL +++ + + N E+++L + Sbjct: 223 PELIEAEQN------QAVILRIAVEFPEILNRPIFFEQFSHFEFTN-EMKRLQQRVIDVI 275 Query: 527 VEQKYFLPEEIHQRLCE 543 + E + Q L + Sbjct: 276 SNKSKLDIEALLQVLKQ 292 >gi|260892593|ref|YP_003238690.1| zinc finger CHC2-family protein [Ammonifex degensii KC4] gi|260864734|gb|ACX51840.1| zinc finger CHC2-family protein [Ammonifex degensii KC4] Length = 407 Score = 126 bits (315), Expect = 2e-26, Method: Composition-based stats. Identities = 65/356 (18%), Positives = 117/356 (32%), Gaps = 28/356 (7%) Query: 10 DLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KGF-YYCFS 66 +L + + ++ Y V+ + N ++ CP H EKTPSF ++ +G + CF Sbjct: 11 ELAREVSLLDVARAYGVELKKVGKN-----WFGLCPLHHEKTPSFTVYETPRGLRWKCFG 65 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRL-AA-IAGVPLPVVDPKIEKKEKIQTDLIRL--IE 122 C GD + ++ L S +E+ ++L A G P P +E+ Q + + +E Sbjct: 66 CGEGGDVIDLVAKLEALSPLEAARKLVADYRYGWT-PAPAPASRPREEKQATELGVAPLE 124 Query: 123 VATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 V + L R L RG+ AIE P R + + R Sbjct: 125 VRDAVYRELLDALDLLPRHRENLKARGLSDAAIERNMYRSLPSPREARQVAARLAKN--- 181 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 AG+ + + + P+R G+V R N + + Sbjct: 182 -YDLAGVPGFYRDGDSWTFTTCRGFLIPVRDVAGKVQGLQVRLDEP------KNGGKYVW 234 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F GA + L EG + + ++ G + Sbjct: 235 FSSAGKPSGT-GARTAAH-VATPLSGSFPRRRLWLTEGPLKADVAAEYLGVRFLAVPGVS 292 Query: 302 LTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLLSR 355 + + ++ +VL FD D +A++ L G + Sbjct: 293 VWRDAVEVVKALRPREVVLAFDADQATNEGVARAVEGLAAVLRDAGLELRRASWPP 348 >gi|167010406|ref|ZP_02275337.1| DNA primase [Francisella tularensis subsp. holarctica FSC200] Length = 435 Score = 125 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 97/398 (24%), Positives = 175/398 (43%), Gaps = 22/398 (5%) Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 YDRFR R++FPIR+ +G VIA+GGR + VKY+NSPET++F K LY + Sbjct: 26 NLYDRFRGRVMFPIRNIQGNVIAYGGRVTEDSDGVKYINSPETLVFQKNNILYGLYEYRE 85 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR 316 +K D+ S +++VEGYMDV+ L Q G V++LGTA + ++L++ + Sbjct: 86 --RKKQYPDLINQS---LVVVEGYMDVVGLAQHGFYAAVATLGTAFSPNHAKILFRETSS 140 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 ++LCFDGD+ G +AA + I ++L L ++ + L +DPD +I+ YG F + Sbjct: 141 VILCFDGDEAGQKAALRTIKILLPMLDGNKKLKILTLPDKDDPDDYIKKYGLERFLTALD 200 Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 SL + D + + + + +AE+ +LKN + ++D + I D++ Sbjct: 201 NSLAVADFVIDNLIQGKDLRKAEAKAEVLENLKNFLADVEDNIYSESITATIADKIGIKV 260 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 +++ + +K + + + ++ K K L E +L L + A Sbjct: 261 EQFKNLL-------------KIRKQTTLNVNRQQNIQQKKLAKNLLLEEFVLAELFVNIA 307 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLCER--GFGELLKQ 552 + + ++ + + E E + Q L E + E L + Sbjct: 308 DFRILQHTNDFEIFATSKNLDILAKSLKILKEDSSNQIEAVILIQLLAEDYPDYREYLFE 367 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 L + + ++ + RL Sbjct: 368 LLSYGIRNTQKKYAEDKYQEQMFVMLKRVENSSVKKRL 405 >gi|121583525|ref|YP_973951.1| zinc finger, CHC2-family protein [Polaromonas naphthalenivorans CJ2] gi|120596775|gb|ABM40209.1| zinc finger, CHC2-family protein [Polaromonas naphthalenivorans CJ2] Length = 2510 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 143/393 (36%), Gaps = 52/393 (13%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG----FY 62 I DLL +P+ ++ + ++ +RR A CPFH + PS + + G Y Sbjct: 6 IGDLLAKVPLEEVVTRLGIETERRGGVT-----RALCPFHQDTRPSLNLYSADGNSPAHY 60 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +CF+C G + + + G F+ +VQ LA + I + + E Sbjct: 61 HCFACGAHGIAIDLVKQVEGLEFLPAVQWLARQFSIRP------IRNQASRRAGRAGASE 114 Query: 123 VATDFFHHSLKNARD-KRLHYYLDERGIDSHAIEMFKLGYAPDS-------------RYS 168 A +F D ++ + DERG D + L R Sbjct: 115 TAQEFAQRIFNARHDVEQFQSWCDERGFDPAFLHGQGLRCITRGVLVESLQAEPVGERAG 174 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG-----QVIAFGGR 223 L + L+ G + + + + + I RG +V+ F GR Sbjct: 175 LIDELQSLGLIKRLRSYSPAAQGKLDLLDQFQDCFHDGRVVIPIRRGEAKRTEVVGFAGR 234 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 L T F K + L+N A + ++++ N S+ + LVEG++D Sbjct: 235 ALQSAPPEGVPKYLLTPGFEKSEYLFNEPEAFRAVAQALKN----NESARLYLVEGFLDA 290 Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRI--------VLCFDGDDPGLRAAYKAI 335 L L G V+ +G +L + Q L KLS ++ + D D G A + Sbjct: 291 LRLQSLGQP-AVALMGISLGKGQFERLTKLSQKMPGTAPLAYCIFLDNDPAGFGGADRLA 349 Query: 336 DLVLCHLIPGNRVNFVLLSR----GEDPDSFIR 364 +L R + G+DPDS +R Sbjct: 350 RGLLGLTGVDMRWVGMPWRTEPSLGKDPDSSLR 382 >gi|218670804|ref|ZP_03520475.1| DNA primase [Rhizobium etli GR56] Length = 163 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 2/157 (1%) Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEIHQRLCERGFGELLK 551 HPA++ + Y E+A I YD+ ELQ+LWS + + + + +RL GFG L+K Sbjct: 1 HPALMIDDYDEIAAIEYDSRELQRLWSAVLGAAAAVAGPHLTRDYLTERLEFEGFGPLIK 60 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 LD+QVR+A LW+AT EA + D R+GY+QALA +KR + L RQK E+E++IA T G+ Sbjct: 61 SLDQQVRNARLWTATEEAAMEDAREGYRQALAFHKRAKALRRQKMELEREIALATEAGDG 120 Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 E LI EVH++ ++E+QEA+I+GFG +SGR+ Sbjct: 121 EAIVQLIRAQQEVHLEGVRLENQEAIIDGFGVLSGRV 157 >gi|262067817|ref|ZP_06027429.1| putative toprim domain protein [Fusobacterium periodonticum ATCC 33693] gi|291378541|gb|EFE86059.1| putative toprim domain protein [Fusobacterium periodonticum ATCC 33693] Length = 807 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 87/500 (17%), Positives = 177/500 (35%), Gaps = 45/500 (9%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-----SFI-ESVQRLAA 94 P H++ PS H + +YCFSC+ D L FI E+V LA Sbjct: 34 CLNPEHEDHNPSMHFWEENNIFYCFSCNYTCDIFDLAHLLENKPICGPDFIEENVFYLAR 93 Query: 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 G P + ++ +E + + R+++ +D+ + +L++R I Sbjct: 94 KYGFPYEHLQKELTAEEIKKHTMYRIMKSFSDYITKN-------ANKNFLEKRNITEETA 146 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 + +G + + L + + I + I T + N+LIF I+ Sbjct: 147 KELNIGSVVNFEDCKKYLLNNFKLNNIEEILKEVGI------TKFKVNENKLIFIIKDKF 200 Query: 215 GQVIAFGGRTLSK-GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 G+ +F R ++ + KY+N ET +++K + + + + N Sbjct: 201 GRPCSFVSREMNDVVNNPKYINGAETEIYNKSEIFFGWSDIKK----------KFNPLGI 250 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAA 331 I++VEGY+D ++ Q G +NVV+ + T+ + L K +I + D D G + Sbjct: 251 ILIVEGYIDFVTAYQKGFRNVVALGSASFTDEHIAFLEKNKNINKIAIALDNDKTGNKRT 310 Query: 332 YKAIDLVLCHL-IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390 I+ V +S+ +D D + I + L + K+ Sbjct: 311 DSLIERFKNKKLNKDYVVAINKMSQYKDLDEILNNSEDDLTLIDIYDIYNLFEYELKKLK 370 Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLR-------YYYSQAIRDRLQQLFQKYITEH 443 E + + I ++ +++++ R Y + I ++++ + + Sbjct: 371 EGPFEESIIFDKFVSIIAQSKSPKLREEQARILSKYLNEYSYKTILEQIEYTLESKNELY 430 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + A ++ P L +K E + E + Sbjct: 431 KQEVKKLIDYASKNVERNPDNLLTIIEAIKEDYEDINKKFEKKKTDIFESGLEFFDEFER 490 Query: 504 -----ELADIRYDNNELQKL 518 +L +I + L L Sbjct: 491 NKSIYDLFNIDFQIPWLDDL 510 >gi|237750982|ref|ZP_04581462.1| DNA primase [Helicobacter bilis ATCC 43879] gi|229373427|gb|EEO23818.1| DNA primase [Helicobacter bilis ATCC 43879] Length = 113 Score = 118 bits (294), Expect = 4e-24, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 7/95 (7%) Query: 3 YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P++ I+++ + N+ + ++ + N Y A CPFH E SF N K Sbjct: 25 IPKERIQEVKDK-DLVNVCERLGIELQKNGRN-----YVAICPFHIENKASFTINTQKNL 78 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 +YCF C GD + + +F++++ L+ +A Sbjct: 79 WYCFGCGEGGDTIKLYMKMKNVNFVKAIDELSTLA 113 >gi|309783308|ref|ZP_07678019.1| DNA primase [Ralstonia sp. 5_7_47FAA] gi|308917940|gb|EFP63626.1| DNA primase [Ralstonia sp. 5_7_47FAA] Length = 328 Score = 117 bits (293), Expect = 5e-24, Method: Composition-based stats. Identities = 109/314 (34%), Positives = 155/314 (49%), Gaps = 16/314 (5%) Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 LI + A F+ L+ A R YL RG+ + LGYAP +LRE Sbjct: 5 LIDHLTQAASFYRGQLRAAH--RAVAYLKARGLRGDIAARYGLGYAPAGFQALREAF--P 60 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++ + +AGL + ++ YDRFR+R++FPI G VI FGGR L KYLNS Sbjct: 61 NYNDRALEKAGL-VAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVLEGD-GPKYLNS 118 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG+ L+ A + ++ +VEGY+DV+SL Q GVQN V+ Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIA----------ATGTAYVVEGYLDVVSLAQHGVQNAVA 168 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T + L L+ R++ CFDGDD G RAA +A+D+ L H+ V+F+ L R Sbjct: 169 TLGTATTGQHVERLLGLAKRVIFCFDGDDAGRRAAVRALDVCLPHVTDAADVSFLFLPRD 228 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF L +E+ L + + RA L + I Sbjct: 229 HDPDSYVRAKGGDAFNDLALEASSLEGFFLASAMQGCQLEYAEGRARLVATAAPRLQQIN 288 Query: 417 DQKLRYYYSQAIRD 430 + AI Sbjct: 289 APAMLCRILTAIAG 302 >gi|75761905|ref|ZP_00741830.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490613|gb|EAO53904.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 335 Score = 117 bits (292), Expect = 7e-24, Method: Composition-based stats. Identities = 66/354 (18%), Positives = 130/354 (36%), Gaps = 20/354 (5%) Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 ++L EGY DVL+ ++GV+ V+++GTALTE Q +LL + +VLC+DGD G A K Sbjct: 1 MVLFEGYADVLAAVKSGVEEAVATMGTALTEEQAKLLRRNVETVVLCYDGDKAGREATMK 60 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393 A L L G +V L DPD +++ YG TAFE L+ S+ V + Sbjct: 61 AGQL---LLKVGCQVKVTSLPDKLDPDEYVQQYGTTAFENLVKSSVSFVGFKINYLRLGK 117 Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453 + + E + ++ ++D Y +++ + + + Y + K Sbjct: 118 NLQDESGKEEYVKSVLKELSLLQDAMQAESYLKSLSQEFSYSMETLLNQLHQYRKEQKVQ 177 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 + Q +++Q+ E ++ ++ + + + Sbjct: 178 QKQIKQVAKPSQVVQT----KPKLTGFERAEREIIYHMLQSAEVAVRMESHIE--DFHTE 231 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 E + + L++ + + L + ++ + + E Sbjct: 232 EHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------STDEFINPEYTEE- 284 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 Q R +K EI ++ Q+ E ++ L + Sbjct: 285 ----VLQGHLETLRRHQEKLEKMEIIFKVKQMEKTDPVEAAKYYVAYLQNQKAR 334 >gi|283479881|emb|CAY75797.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 848 Score = 116 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 93/555 (16%), Positives = 169/555 (30%), Gaps = 69/555 (12%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKI 107 + +K Y+CF C G L +L S ++V+RL A G VPL Sbjct: 1 MVISPAKNLYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAAAEPD 60 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + L+E T F+H +L NA + Y R + FK G+A Sbjct: 61 VFADDEAGR-QALLERVTAFYHQTLLNAP-EAXAYLEKRRLHHPELVAAFKPGFA---NR 115 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 +L L K + I A L G + ++ F L+ P+ G++ GR + K Sbjct: 116 TLAYRLPPKKLKDGAAIRARLQALGIMRESGHEHFTGXLVVPVADLHGRIREVYGRKIDK 175 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + +LY L + + S +IL E +D +S Sbjct: 176 PQRGM------------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIDAMSFW 218 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 AG +NV ++ G R + ++++ FD D G AA + L + Sbjct: 219 VAGWRNVTAAYGVNGFTDDHRRAFAQHEXKQVLIAFDNDAAGNXAA---VRLAAELVQMQ 275 Query: 346 NRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD------MLWKRETENRSFNT 397 ++ G D + ++ + F L+ + P+ D M+ + + Sbjct: 276 IDTFRIVFPAGMDANGYLCRVAEPEREFGLLVESAQPMRDAVTVPEMVVPETLPALAASP 335 Query: 398 PDERAELEI---------------HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D +E ++ + Q + F + Sbjct: 336 SDPGVVVERGEAGEVLIGLGAQRWRVRGLAQVKPGAAVMKLNVQVLXRESGAAFADSLDL 395 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQS-------------SLVKGKLSKKPSLREAALLL 489 S R L +S + + + + +E A L Sbjct: 396 ISARSRGGXVRQAAAXLGLAEDDLRRSLGKVLLALENLTAQPQPEESAPQLTEQERAAAL 455 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 L+ P + +LA L + + + + Q G L Sbjct: 456 ALLRCPDLSGRITDDLAACGVVGES-GNLLAAYLAATSRRLERPLAVLIQSSSAAGKSSL 514 Query: 550 LKQLDRQVRDAGLWS 564 + + + + Sbjct: 515 MXAVLGLMPEEERMQ 529 >gi|58699734|ref|ZP_00374388.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533750|gb|EAL58095.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] Length = 337 Score = 116 bits (289), Expect = 2e-23, Method: Composition-based stats. Identities = 69/361 (19%), Positives = 141/361 (39%), Gaps = 39/361 (10%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MD ++L QAG+ N V+ LGTA++ Q++ LW+ + I +C DGD G AA + +L L Sbjct: 1 MDTIALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALP 60 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENR 393 L PG + FV L +DP Y K + S L +N Sbjct: 61 ILEPGYTLKFVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNY 120 Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453 P++ + LE +N I + +R YY ++ +E + N Sbjct: 121 EKLAPEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNK--------ASELRSSFKKQIFN 172 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE--QYQELADIRYD 511 ++ R KG L++ + + +A +L + P IL +++ + + Sbjct: 173 SKTRATKGEYLHNKSPELIEAEQN------QAVILRIAVEFPEILNRPIFFEQFSHFEFT 226 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 N E+++L + + E + Q L + + + ++ Sbjct: 227 N-EMKRLQQRIIDVISNKNKLDKEALLQELKQFNV---------------IKYVFEKTSV 270 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ + +++ + +L ++ + K+ + G + LI + ++ I ++ Sbjct: 271 LNSQLNERKSAEIVWNNIVLLKELNALRKERTEARLSGNLDLEERLIEQIEQIESSIQEM 330 Query: 632 E 632 + Sbjct: 331 Q 331 >gi|310830396|ref|YP_003965497.1| DNA primase [Paenibacillus polymyxa SC2] gi|309249863|gb|ADO59429.1| DNA primase [Paenibacillus polymyxa SC2] Length = 486 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 64/492 (13%), Positives = 150/492 (30%), Gaps = 53/492 (10%) Query: 6 DFIKDLLIH---IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGF 61 FI+ L+ IP+S ++G + R+ + Y CPFH+ K SF +D K Sbjct: 5 QFIEQLIDQARSIPMSTVVGSRMSLIRKGS-----SYKGLCPFHNGKKIGSFDVSDRKQI 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-------PLP----VVDPKIEKK 110 + CFSC V GD + F+S G ++ + R+A G+ +EK Sbjct: 60 WKCFSCGVGGDTIKFVSLYDGIDYLAAAFRVALECGIISSWEYDEFYANRRYRKHDVEKI 119 Query: 111 EKIQTDL-----------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 ++ L ++ F S + + H + + + Sbjct: 120 QRRYEALDKEKFQTNIADNETLDQVFRIFIKSCDLSEAHKNHLLKERGLTEEEISKGLYF 179 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR-------LIFPIRS 212 + S + F + + + + + + + + I++ Sbjct: 180 TFPTRKVLSKFCKNIRSAFDGSEEVLSTIPGFFRQESKKFPGQKMYSFAKHVGIGIGIKN 239 Query: 213 SRGQVIAFGGRT--LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 ++GQV+ R + S + + + + Sbjct: 240 AKGQVVGIQIRHDAKGDKDVRYVWFSSAFAMNDDK-----YDSGTSSGSPVDVVYPEVIT 294 Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGL 328 + +++ EG L ++ +S G + L ++ + ++GD Sbjct: 295 NRTVLITEGRFKAQHLAKSTGSITISVQGVTSWRGIVSELDEIPNSLAVKKRYNGDYNVH 354 Query: 329 RAAY-KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 D+ + ++ + + + + L K Sbjct: 355 CLCIAFDADMNYKWQVAEQLKKMADQLEAHGYFTYYLNWNEKDGKGVDDIILAGKQATIK 414 Query: 388 RETENRSFNTPDERAELEIHLKNC--INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 R + + ++ E + + + + + ++ Y+ +R + E SG Sbjct: 415 RYDKELWDKSYEKMCESILKNEPYTKMADVPEHVVKKYFEIYVRSK---TLPLEKGELSG 471 Query: 446 YGRYWKKNARHR 457 + + + R Sbjct: 472 VHQRGINSKKTR 483 >gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802] gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802] Length = 1172 Score = 114 bits (286), Expect = 4e-23, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 149/478 (31%), Gaps = 63/478 (13%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKG 60 YP F D R + PF + K+ SF G Sbjct: 23 RYPHQFFDD------------------RSGKLRGRP------PFRESKSGTSFTVFPDNG 58 Query: 61 FYYCFSCHVKGDHLSFL--SAL------LGCSFIESVQRLAAIAGVPLPVV--DPKIEKK 110 FY G +L + G F+E+V+ L IA + P P+ +K Sbjct: 59 FY-DAGDGFSGSAADYLHSMNIGRWERAKGRDFVEAVRELCTIASIEFPEQELTPEQIEK 117 Query: 111 EKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDSHAIEMFKLGYAPDSRYSL 169 +I A F L YL+ ERG+ I+ +LGY + R + Sbjct: 118 AAHWERRRGIIGSAIAFCEQVLWTDIGLEARRYLNEERGLSDQDIKTLQLGYFANYREVV 177 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + L+Q+GFS+E+I AGL ++ + +P +G+ + GR K Sbjct: 178 K-ILKQRGFSQEEIKAAGLAS---------PKWNGYITYPWHDDQGRPLTIYGRYHQKHP 227 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 + ++ V N I VEG D L Sbjct: 228 PEGLPKTLALPGGSTKRSPLYLDK------------VLANHHREAIFVEGVNDAAVLQTR 275 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G V+S + + + Q+ +L + + GD G +L L + Sbjct: 276 GETRVLSGVAASFSNEQIEILKRRGITKIY-HLGDPDGGGVGGTNSNLQRLTLAGISVFV 334 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 L G DPD F+ YG AF +LI S K+ ++ ++ Sbjct: 335 PPQLPDGLDPDEFVIKYGLEAFHQLISNSEHGFRWKAKQIIATHGTDSDAAIKKVLEEAI 394 Query: 410 NCINHIK---DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 I + L+ +Y I+ + E + S+ Sbjct: 395 AWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTIKTQASPVEGIPNWKASE 452 >gi|301063317|ref|ZP_07203862.1| putative DNA primase [delta proteobacterium NaphS2] gi|300442614|gb|EFK06834.1| putative DNA primase [delta proteobacterium NaphS2] Length = 933 Score = 114 bits (285), Expect = 4e-23, Method: Composition-based stats. Identities = 86/438 (19%), Positives = 152/438 (34%), Gaps = 41/438 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M DF K + I I + I + + D CPF F SKG Sbjct: 1 MQTNEDF-KAVKYRIDIVSEIRSRTGQPTKSIGSDCIDLK-ECPFCKGHD-CFRITPSKG 57 Query: 61 FYYCFSC---HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPKIEKKEKIQ 114 YYC C GD +F++ L CS +E+++ LAA G + K + ++K + Sbjct: 58 VYYCHECPGGGKGGDIFNFVANLDNCSRLEALEDLAASCGYEMAPATKGTNKEDPRQKER 117 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + +++H ++ ++ L Y +R ++ F++GY S L EHL Sbjct: 118 ETLQDVRNATAEYYHKNMFKDQNA-LRYQTQDRKHSHDVLKAFQVGY---SDGRLHEHLA 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 GF +E +++GL + Y + I+P R GQ+ F + + Sbjct: 174 GHGFPQELRLKSGLTNIHEGRERDYFT-KGLYIYPHRGRSGQIEHFTQKDPRGKMKYQLP 232 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N + + YN S+ +ILVEG D+L++ G Sbjct: 233 NDFKDP----ECHFYNMP--------------ALKSNGPLILVEGENDLLTVVDRGEFQN 274 Query: 295 VSSLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V + L++ QL L W + +C D D G +P Sbjct: 275 VIAGIGRLSKTQLDYLAKWAPGKTLFVCSDNDKGGENYREDVRKAFQALCMPPRLAKISN 334 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 P + ++ I + L + + + ++ + + Sbjct: 335 E-----PVTTLKFMRFDPEHNDIDDYLRSRKDAKRALIK--CLDQAEQILMPLKSVMHAY 387 Query: 413 NHIKDQKLRYYYSQAIRD 430 + D + R I + Sbjct: 388 RTLCDDQERKRNGDEIGE 405 >gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801] gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801] Length = 1172 Score = 113 bits (283), Expect = 7e-23, Method: Composition-based stats. Identities = 86/436 (19%), Positives = 143/436 (32%), Gaps = 39/436 (8%) Query: 44 PFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFL--SAL------LGCSFIESVQRLAA 94 PF + K SF GF+ G +L + G F+E+V+ L Sbjct: 41 PFRESKNGTSFTVFPDNGFF-DAGDGFSGSAADYLHSMKIGRWERAKGRDFVEAVRELCQ 99 Query: 95 IAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD-ERGIDS 151 +A +P P P+ +K +I A F L YL+ ERG+ Sbjct: 100 LARIPFPEQELSPEQIEKAAHWERRRGIIGSAIAFCEQVLWTDIGLEARRYLNEERGLSD 159 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 I+ +LGY + R ++ L+Q+GFS+E+I AGL ++ + +P Sbjct: 160 QDIKTLQLGYFANYREVVK-ILKQRGFSQEEIKAAGLAS---------PKWNGYITYPWH 209 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 +G+ + GR K + ++ V N Sbjct: 210 DDQGRPLTIYGRYHQKHPPEGLPKTLALPGGSTKRSPLYLDK------------VLANHH 257 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 I VEG D L G V+S + + + Q+ +L + + GD G Sbjct: 258 REAIFVEGVNDAAVLQTRGETRVLSGVAASFSNEQIEILKRRGITKIY-HLGDPDGGGVG 316 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 +L L + L G DPD F+ YG AF +LI S K+ Sbjct: 317 GTNSNLQRLTLAGISVFVPPQLPDGLDPDEFVIKYGLEAFHQLISNSEHGFRWKAKQIIA 376 Query: 392 NRSFNTPDERAELEIHLKNCINHIK---DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 ++ ++ I + L+ +Y I+ + E + Sbjct: 377 THGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTIK 436 Query: 449 YWKKNARHRDQKGPSQ 464 S+ Sbjct: 437 TQASLVEGIPNWKASE 452 >gi|124010376|ref|ZP_01695022.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134] gi|123983543|gb|EAY24008.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134] Length = 876 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 126/378 (33%), Gaps = 68/378 (17%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I+ + ++ I+ ++ Y N + CCPFH++ PS +CFS Sbjct: 2 TIQQIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHNDTKPSMEVFPKSDTVFCFS 54 Query: 67 --CHVKG---DHLSFLSALLGCSFIESVQR----LAAIAGVPLPVVDPKIEKKEKIQTDL 117 C V G D + F+ S E++ + L A GV P + + Sbjct: 55 SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGAPSPSLVQAQPAISEKVR 114 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 ++ + A F + ++ + + P Sbjct: 115 VKTMTAAFAHFQKAFAQSKAAQAYMQSRGLEGIQEVGFHDGKLSKP-------------- 160 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 L D S R +IFP++++ G +++F GR++S ++ S Sbjct: 161 ----------LRAGLDTLGISSAWGRGCIIFPLKNAEGDIVSFYGRSISNEGDQRHFYS- 209 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL-CQAGVQNVVS 296 + + LY + S+ +++L E +D S V++ Sbjct: 210 -----TQRQGLYPGYP-------------DAQSTKYLVLTESVIDAASFPVDDDATAVLA 251 Query: 297 SLGTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-----NRV 348 GT + L I L FDGDD G +A D + + G + Sbjct: 252 LYGTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKTRADELWKVWLHGASATTQTI 311 Query: 349 NFVLLSRGEDPDSFIRCY 366 + V GED +S + Y Sbjct: 312 SSVPTPEGEDVNSLLVAY 329 >gi|218507669|ref|ZP_03505547.1| DNA primase [Rhizobium etli Brasil 5] Length = 132 Score = 113 bits (282), Expect = 9e-23, Method: Composition-based stats. Identities = 57/125 (45%), Positives = 84/125 (67%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + V + + + +RL GFG L+K LD+QVR+A LW+AT EA + D R+GY+QALA Sbjct: 2 AAAVAGPHLTRDYLTERLEFEGFGSLIKSLDQQVRNARLWTATEEAAMEDAREGYRQALA 61 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 +KR + L RQK E+E++IA T G+ E LI EVH++ ++E+QEA+I+GFG Sbjct: 62 FHKRAKALRRQKMELEREIALATEAGDGEAIVQLIRAQQEVHLEGVRLENQEAIIDGFGV 121 Query: 644 MSGRL 648 +SGR+ Sbjct: 122 LSGRV 126 >gi|325103632|ref|YP_004273286.1| hypothetical protein Pedsa_0892 [Pedobacter saltans DSM 12145] gi|324972480|gb|ADY51464.1| hypothetical protein Pedsa_0892 [Pedobacter saltans DSM 12145] Length = 324 Score = 112 bits (279), Expect = 2e-22, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 52/166 (31%), Gaps = 12/166 (7%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ + + + CPFH EK+ S KG + CF C Sbjct: 9 IKEKADILQVVKSLIPLTAKG--------YGKCPFHTEKSGSLKVESKKGIFKCFGCGAS 60 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F+ ++ E+ +A + K E + + L + + F Sbjct: 61 GDVIDFVMKYKSITYKEAFTWIADFYRIGDFKDQAKDFVPEPAKELPVSL--IPKNIFIR 118 Query: 131 SLKNARDKRLHYYLDERGIDSH--AIEMFKLGYAPDSRYSLREHLR 174 S+++ + +L+ + + + Sbjct: 119 SIRHYFHNNFYEWLNRHFAPESCFHAANQYFIGSSKHWNNATVFWQ 164 >gi|124010517|ref|ZP_01695149.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134] gi|123982319|gb|EAY23874.1| CHC2 zinc finger domain protein [Microscilla marina ATCC 23134] Length = 819 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 124/376 (32%), Gaps = 66/376 (17%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I D+ ++ I+ ++ Y N + CCPFHD+K PS +CFS Sbjct: 2 TISDIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHDDKKPSMEVFPKSDTVFCFS 54 Query: 67 --CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIR 119 C V G D + F+ S E++ + ++ G + + + I+ Sbjct: 55 SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGASAVAQAQPVVSEKSRIK 114 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F S ++ + + P Sbjct: 115 TMTAVFAHFQKSFAQSKAAQAYMQNRGLERIQEVGFHDGTLSKP---------------- 158 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 L + + R +IFP+++++G++++F GR++S ++ S + Sbjct: 159 --------LRAGLEALGITSAWGRGCVIFPLKNAQGEIVSFYGRSISNNGDQRHFYSKDR 210 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-SSL 298 + A L + +++L E +D S V + Sbjct: 211 K---------GLYPAYPDL----------QGTKYLVLTESVIDAASFPVDDAATAVLALY 251 Query: 299 GTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG-----NRVNF 350 GT + L I L FDGDD G +A D + + G ++ Sbjct: 252 GTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKSRADELWKVWMHGSSATTQTISS 311 Query: 351 VLLSRGEDPDSFIRCY 366 V GED +S + Y Sbjct: 312 VPTPEGEDVNSLLVAY 327 >gi|269928748|ref|YP_003321069.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM 20745] gi|269788105|gb|ACZ40247.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 111 bits (277), Expect = 4e-22, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCND-SKG 60 + R+ I+ + PI +IG V Y CPFHD K+ S G Sbjct: 79 FERETIERIKTAWPIEAVIGLDVPLRPVGRG-----YRGKCPFHDGKSDNSLSVKPGVDG 133 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQT 115 +YCF C GD L+++ A C F E+++RLA +AG+P+P P+ K ++ Sbjct: 134 AFYCFGCRFGGDVLAWIMAFHRCEFSEALRRLAHMAGLPIPMRRRPQPPSKGPVRE 189 >gi|224010754|ref|XP_002294334.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969829|gb|EED88168.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 80 Score = 111 bits (276), Expect = 5e-22, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 P + I + I + ++I Y + T ACCPFHD+ PS +D++G Sbjct: 1 RIPTEQINQIKSTISLVDVIETY-NL-PSFTRTNSHIAKACCPFHDDNNPSMSIDDNRGL 58 Query: 62 YYCFSCHVKGDHLSFLSALLGC 83 Y CF+C GD +F+ Sbjct: 59 YKCFACGAGGDVFNFIREYDAL 80 >gi|257457792|ref|ZP_05622953.1| DNA primase [Treponema vincentii ATCC 35580] gi|257444842|gb|EEV19924.1| DNA primase [Treponema vincentii ATCC 35580] Length = 330 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 69/357 (19%), Positives = 135/357 (37%), Gaps = 31/357 (8%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MDV++ QAG+ N V+ LGTALTE Q+RL+ + I+L FD D G +A YKAI L Sbjct: 1 MDVIAFHQAGITNAVAPLGTALTEEQVRLIQSFADTIILSFDSDFAGQQATYKAIKLCRA 60 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 +V +++ G+DP + G + +L+ ++ D L + +P+ Sbjct: 61 GH---LQVRVLMIKEGKDPAEILVRKGAESLTELVKHAILDSDYLIQIAVGRFDVVSPEG 117 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 +A+ L I ++ + L + T++ Y + ++ R + Sbjct: 118 KAQAAAFLFPYIEVLESDIQKESTIHKFSADLGISSKALFTDYIQYDQRQERVPPTRKSE 177 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 K + E ++L +P + ++ EL +++ + L+ Sbjct: 178 TQ------------KRTALKMTAELRIVLAAAANPYLFKKMRAELTSDDFEDPAAKDLFI 225 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 L + + LL + + SA + + Sbjct: 226 VLEECYRADANT-------------YDSLLAHCPSETLKNAVSSAIIKGEFAENPDKLVH 272 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQ 634 Y + L RQKE I +++ V G+ ++ L+S + + +++ Sbjct: 273 DGIYYIKQNALQRQKELIIRKLQAVRESGDIDEIRHTNDLLSEKLHIDRMLAELKET 329 >gi|283851755|ref|ZP_06369033.1| zinc finger CHC2-family protein [Desulfovibrio sp. FW1012B] gi|283572875|gb|EFC20857.1| zinc finger CHC2-family protein [Desulfovibrio sp. FW1012B] Length = 345 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 76/375 (20%), Positives = 127/375 (33%), Gaps = 49/375 (13%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I D+ IPI + + + K N G HD KTPS K ++CF Sbjct: 5 INDIKS-IPIKEVALKLGIKVKGNKANCFGG--------HDNKTPSLSFTPGKNLWHCFG 55 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK-----IEKKEKIQTDLIRLI 121 C + G+++ + L C+F +S+Q A G+ + +K ++ + + Sbjct: 56 CGLGGNNIDLVEKSLRCTFKQSLQWFATNFGINIFNFRKTHDKLYNRQKVAVRQGIKKAT 115 Query: 122 EVATDFFHHSL--------KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 D + L K YL ERG+ I FKL E + Sbjct: 116 AEV-DTYKADLELYEWIIKKLELSPEGENYLRERGLKEETISYFKLCDIVSPNKLFMEAV 174 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 + G + +AGL N S+ + + +I P S G V R L +G Sbjct: 175 KAWGLER--LHKAGLTRINRNKTHSFIWWGHNIIIP-FMSNGHVTYIQARRLEQGGPKYI 231 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 + + K ++N S + + EG D + Q + N Sbjct: 232 N------ISNIQKPMFNLDILRK-----------LKPGSRVYICEGVFDCIVGWQFKL-N 273 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL 353 V LG + + L+ IV+ D D+ G + + + V L Sbjct: 274 TVGILGVGSFKDEWVDLFANF-NIVIIPDADEAGEAF---GLKVQKVFAKMAKVIQIVKL 329 Query: 354 SRGEDPDSFIRCYGK 368 G D + F+ + Sbjct: 330 PNGSDLNDFLTEKHR 344 >gi|23006857|ref|ZP_00048985.1| hypothetical protein Magn03002268 [Magnetospirillum magnetotacticum MS-1] Length = 249 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 89/237 (37%), Gaps = 20/237 (8%) Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-- 463 L+ + I+D+ +R +Y I +RL+ L + + ++ Sbjct: 5 RTLREAVAGIRDETVRRFYRDDIEERLRGLSGGRPERATARSTAPAQRGAPFARRPRPGD 64 Query: 464 -----------QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 L++++ + + REA ++++L+ HP +L + + LA + N Sbjct: 65 PPPSPRITTGFSPLLKAAAPVPVRGGRAAKREAMIVMSLLAHPELLGIEEEALAALELVN 124 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + L + L E PE + RL G E +L V W A+ Sbjct: 125 PDASALRTLLLDRAAEAGTPEPELLESRLRRAGLEEAHGRLAALVNPGDRWMLDPNADPQ 184 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + QA+ L+++ L + + E+ +A+ + + + L +V Q+ Sbjct: 185 RLEHTLHQAVILHRQSGALHSELHQAERALAE-------DGSEANFAWLCDVQQQLA 234 >gi|169834708|ref|YP_001693278.1| DNA primase [Clostridium botulinum B1 str. Okra] gi|169834993|ref|YP_001715818.1| DNA primase [Clostridium botulinum A3 str. Loch Maree] gi|169123256|gb|ACA47091.1| DNA primase [Clostridium botulinum B1 str. Okra] gi|169409100|gb|ACA57510.1| DNA primase [Clostridium botulinum A3 str. Loch Maree] Length = 474 Score = 109 bits (272), Expect = 1e-21, Method: Composition-based stats. Identities = 65/472 (13%), Positives = 134/472 (28%), Gaps = 63/472 (13%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63 + I+ + I + +IG + R+ Y CPFH++ K SF SKG + Sbjct: 8 EELIEKIKS-ISLEIIIGTRIQLIRKG-----MYYMGICPFHNDHKIGSFIVTPSKGIWK 61 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114 CF+C+V GD + F+S +++E+ + + + ++K K + Sbjct: 62 CFTCNVGGDAIQFISLHDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNIQK 121 Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 +++ + + F +H + + Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPQRINRDYFTFPT 181 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + L + G++E+ + + IR+++G+++ Sbjct: 182 RKIWNQFVDKLNKCGYNEKILKNIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241 Query: 223 R---TLSKGESVKYLNSPETILFHKGKNLYNF-FGALNYLQKSIRKDVRRNSSSFIILVE 278 R +K + S + K+ Y GA + + + + ++ + + E Sbjct: 242 RKDKKRNKQDQRYIWFSSSFANLEENKDKYKLGTGAGSPI--DVVYPSQITNNPTLAITE 299 Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEY------------------------QLRLLWKLS 314 G L + GV + T + Q + + Sbjct: 300 GRFKAEKLAERGVIAISVQGVTTWRKIIEVIGEIKRLQQYKEAINKFHLYCQYKGIKNKK 359 Query: 315 PRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 I +CFD D G Y + G+ D I Sbjct: 360 IPIYICFDADMIGNFQVYTQGKKMSDAIEKRFHEYKIIYLQWNEKYGKGIDDLIINNQTN 419 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + E+L + +K I Q R Sbjct: 420 KARRFKKETLDYIYGSLILNILKEYHEYEGPNKIPNELIKKEFYTIISQNER 471 >gi|58697685|ref|ZP_00372848.1| DNA primase [Wolbachia endosymbiont of Drosophila simulans] gi|58535810|gb|EAL59634.1| DNA primase [Wolbachia endosymbiont of Drosophila simulans] Length = 245 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 72/252 (28%), Positives = 111/252 (44%), Gaps = 17/252 (6%) Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 LS + KYLNSPE+ LF K +NLY AL+ ++K I++VEGYMD + Sbjct: 2 LSSEQQPKYLNSPESQLFKKRENLYGLNFALSEIRKK----------QHILVVEGYMDTI 51 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 +L QAG+ N V+ LGTA++ Q++ LW+ + I +C DGD G AA + +L L L P Sbjct: 52 ALHQAGISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEP 111 Query: 345 GNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNT 397 G + FV L +DP Y K + S L +N Sbjct: 112 GYTLKFVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLA 171 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 P++ + LE +N I + +R YY ++ +L + + K Sbjct: 172 PEKYSILEHKFMEYVNTISNSSIRRYYRDYFYNKASELRSSFKKQIFNSKTRATKGEYLH 231 Query: 458 DQKGPSQRLMQS 469 ++ Q+ Sbjct: 232 NKSPELIEAEQN 243 >gi|119357507|ref|YP_912151.1| zinc finger, CHC2-family protein [Chlorobium phaeobacteroides DSM 266] gi|119354856|gb|ABL65727.1| zinc finger, CHC2-family protein [Chlorobium phaeobacteroides DSM 266] Length = 350 Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats. Identities = 56/369 (15%), Positives = 112/369 (30%), Gaps = 39/369 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + IPI + + + + R T A+ + HD+ +PS + + + C Sbjct: 4 KSDLSPIKQ-IPIIEV-AKRLGIEVRGTKAM--CFMG----HDKASPSLSFSINYNTWRC 55 Query: 65 FS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE---KIQTDLIRL 120 F C GD ++ + G F +++ + + K+ K ++ Sbjct: 56 FGACGKHGDAINLVMEKEGLDFNAALEWFSNNFNADVKRQFSGQRKRTCSIKQNNAMVAP 115 Query: 121 IEVATDFFHHS-----LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 ++ ++FF S N + ++ + S R Sbjct: 116 VQKQSEFFSDSELYTWFVNKCAFVSNPVGVNYLESHGISDVAASRFNLRQMSSPARAFRM 175 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG-QVIAFGGRTLSKGESVKYL 234 + I ++ R K K+L Sbjct: 176 LLQQWGEDRVFRSGIAWGRDGKPISLIWGSYALLFPFYDEVKITYIQARMFEKEPKAKFL 235 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 N K L+N + + L EG DV+SL G+ + Sbjct: 236 NLRG-----ITKPLFNADRLK-----------SLPAGQTVHLCEGVPDVVSLESKGLIAL 279 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 T+ + K ++V+ DGD+ G + A D+ + G V + L Sbjct: 280 GVLGATSFRTEWVDRFLKF--KVVVLGDGDEGGAKFAK---DISKYFIDRGKPVQCMTLP 334 Query: 355 RGEDPDSFI 363 +G+D + Sbjct: 335 KGKDVSDVL 343 >gi|229587390|ref|YP_002860428.1| DNA primase [Clostridium botulinum Ba4 str. 657] gi|229260225|gb|ACQ51262.1| DNA primase [Clostridium botulinum Ba4 str. 657] Length = 474 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 61/473 (12%), Positives = 136/473 (28%), Gaps = 65/473 (13%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63 + I+ + I + +IG + R+ Y CPFH++ K SF SKG + Sbjct: 8 EELIEKIKS-ISLEIIIGTRIQLIRKG-----MHYMGICPFHNDHKIGSFIVTPSKGIWK 61 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114 CF+C V GD + F++ +++E+ + + + ++K K + Sbjct: 62 CFTCTVGGDAIQFIALYDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNMQK 121 Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 +++ + + F +H + + Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPHRINRDYFTFPT 181 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + L + G++E+ + + IR+++G+++ Sbjct: 182 RKIWNQFVDKLNKCGYNEKILESIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241 Query: 223 R----TLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277 R + + + +S L ++ K + GA + + + + ++ + + Sbjct: 242 RKDKKRNKQDQRYIWFSSSFANLEENEDKYKFGT-GAGSPI--DVVYPSQIINNPTLSIT 298 Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEY------------------------QLRLLWKL 313 EG L + GV + T + Q + + Sbjct: 299 EGRFKAEKLAERGVIAISVQGVTTWRKIIEVIEEIKRLQQYKEAINKFHLYCQYKGIKNK 358 Query: 314 SPRIVLCFDGDDPGLRAAYKAID-----LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 I +CFD D G Y + G+ D I Sbjct: 359 KIPIYICFDADMIGNLQVYTQGKKMSNAIEKKFPEYKIIYLQWNEKYGKGIDDLIINNQT 418 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + E+L + +K I ++ + Sbjct: 419 DKARRFKKETLDYIYESLISNILKEYHEYEGPNKIPNELIKKEFYTIINKNEK 471 >gi|269838258|ref|YP_003320486.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM 20745] gi|269787521|gb|ACZ39664.1| zinc finger CHC2-family protein [Sphaerobacter thermophilus DSM 20745] Length = 198 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 14/105 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS-----FHCND 57 + R I+ + +PI +IG V+ R CPFH +PS Sbjct: 83 FARSEIERIRTALPIEAVIGLDVELKPRGK-----SLRGRCPFH---SPSKSGMSLAVRP 134 Query: 58 SK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 G +YCF C V GD L+++ A C F E+++RLA +AG P+P Sbjct: 135 GHDGKWYCFGCGVGGDVLTWIMAFNHCEFTEALRRLAVMAGEPIP 179 >gi|124010293|ref|ZP_01694945.1| DNA primase, putative [Microscilla marina ATCC 23134] gi|123983627|gb|EAY24072.1| DNA primase, putative [Microscilla marina ATCC 23134] Length = 319 Score = 108 bits (268), Expect = 4e-21, Method: Composition-based stats. Identities = 61/350 (17%), Positives = 114/350 (32%), Gaps = 61/350 (17%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I D+ ++ I+ ++ Y N + CCPFHD+K PS +CFS Sbjct: 2 TISDIKQNLSITTVLAHY-GLSVNGNNRM------CCPFHDDKKPSMEVFPKSDTVFCFS 54 Query: 67 --CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIR 119 C V G D + F+ S E++ + ++ G + + + I+ Sbjct: 55 SNCEVHGKPIDVIDFVMHQEKLSKHEAILKCKSLLGATGGVGASAVAQAQPVVSEKSRIK 114 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + F S ++ + + P Sbjct: 115 TMTAVFAHFQKSFAQSKAAQAYMQNRGLERIQEVGFHDGTLSKP---------------- 158 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 L + + R +IFP+++++G++++F GR++S ++ S + Sbjct: 159 --------LRAGLEALGITSAWGRGCVIFPLKNAQGEIVSFYGRSISNNGDQRHFYSKDR 210 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-SSL 298 + A L + +++L E +D S V + Sbjct: 211 K---------GLYPAYPDL----------QGTKYLVLTESVIDAASFPVDDAATAVLALY 251 Query: 299 GTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 GT + L I L FDGDD G +A D + + G Sbjct: 252 GTNGLTPAHKQLVVQMPHLEEIYLFFDGDDAGRKALKSRADELWKVWMHG 301 >gi|330827380|ref|YP_004390618.1| DNA primase catalytic core domain-containing protein [Alicycliphilus denitrificans K601] gi|329312688|gb|AEB87102.1| DNA primase catalytic core domain protein [Alicycliphilus denitrificans K601] Length = 328 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 155/314 (49%), Gaps = 16/314 (5%) Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 LI + A F+ L+ + R YL RG+ + LGYAP +LRE Sbjct: 5 LIDHLTQAASFYRGQLRASH--RAVAYLKARGLRGDIAARYGLGYAPAGFQALREAF--P 60 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 +++ + +AGL + ++ YDRFR+R++FPI G VI FGGR L KYLNS Sbjct: 61 NYNDRALEKAGL-VAVNDGGRRYDRFRDRIMFPILDDAGSVIGFGGRVLEGD-GPKYLNS 118 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 PET +F KG+ L+ A + ++ +VEGY+DV+SL Q GVQN V+ Sbjct: 119 PETEVFQKGRVLFGLTQAAEAIA----------ATGTAYVVEGYLDVVSLAQHGVQNAVA 168 Query: 297 SLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 +LGTA T + L L+ R++ CFDGDD G RAA +A+D+ L H+ V+F+ L R Sbjct: 169 TLGTATTGQHVERLLGLAKRVIFCFDGDDAGRRAAARALDVCLPHVTDAADVSFLFLPRD 228 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPDS++R G AF L +E+ L + + RA L + I Sbjct: 229 HDPDSYVRAKGGDAFNDLALEASSLEGFFLASAMQGCQLEYAEGRARLVAMAAPRLQQIN 288 Query: 417 DQKLRYYYSQAIRD 430 + AI Sbjct: 289 APAMLCRILTAIAG 302 >gi|162606482|ref|XP_001713271.1| DNA primase [Guillardia theta] gi|12580737|emb|CAC27055.1| DNA primase [Guillardia theta] Length = 651 Score = 107 bits (267), Expect = 5e-21, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 149/403 (36%), Gaps = 59/403 (14%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD------HLS------ 75 +++ N ++A CPFH EKTPSF N +K +YCF C + G+ Sbjct: 67 EKKGEN-----FFAICPFHSEKTPSFCLNLNKNLFYCFGCGISGNYSKLVYLFKNKIDTH 121 Query: 76 -----FL--SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 F + +F I + + L ++ F+ Sbjct: 122 ELNDFFYTNTKSDNSNF--------NINNIEMSEFQTLN---------LYFKLD---KFY 161 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 H +LK + L+ + + + + + + +E+ + K ++ + Sbjct: 162 HKNLKETKFYMLYKFRNLSNLTMKILNLGYSNKKISQIINCQENHEYLRLLKTKTMKYVV 221 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 + D F RL+ PIR+ + FG RT++ + KYLNS E F K K L Sbjct: 222 FDKINKKVVIRDIFNERLVIPIRNIYCLTLGFGARTINSKKIPKYLNSKENKFFKKKKIL 281 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL- 307 + K S ++ EGY+D ++L Q G++ V+SLG + +Q+ Sbjct: 282 F----------SEEIKSNISLKSKCCLICEGYLDSITLFQNGIRFSVASLGGSSNNFQIF 331 Query: 308 -RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG---EDPDSFI 363 L +L FD D+ G ++ I L ++ + LS +DPD ++ Sbjct: 332 KSFLISDYFHTMLFFDFDNAGKLFTFRLIKYFLKLGKNDYILSAISLSDLDYIKDPDEYL 391 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 Y ++ + + + +F+ E+ Sbjct: 392 TEYKSQKLVNCLLNNFIPIYYWIYLNSRYTTFSNNLIYNEILK 434 >gi|312885823|ref|ZP_07745455.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM 18603] gi|311301630|gb|EFQ78667.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM 18603] Length = 89 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 5/93 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 F+ ++ I+ L ++ + + + CP H +F + K Y Sbjct: 2 ISPAFVDNVTAKTDIAELAAEFTELIPKGNSLA-----GPCPLHGGTGATFTVSPDKQVY 56 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95 CF G+ + + + CSF E+V LA Sbjct: 57 KCFKGGSGGNAIKLVMNVQKCSFPEAVVFLAKR 89 >gi|283479889|emb|CAY75805.1| DNA primase [Erwinia pyrifoliae DSM 12163] Length = 877 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 123/340 (36%), Gaps = 36/340 (10%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-----VPLPVVDPKI 107 + +K Y+CF C G L +L S ++V+RL A G VPL Sbjct: 1 MVISPAKNLYHCFGCDAGGSVLDWLMHSEXLSLRKAVERLRAELGENPALVPLVAQPDXF 60 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 E + L +E T F+HH+L NA + L Y R + F+ G A Sbjct: 61 ADDEAGRQAL---LERVTAFYHHTLLNAP-EALAYLEKRRLNHPDLVAQFRPGXA---NR 113 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 +L L K + I + L G + ++ F L+ P+ G + GR + K Sbjct: 114 TLAYRLPPKKLKDGAAIRSRLQALGIMRESGHEHFTGXLVVPVAXLHGXIREVYGRKIDK 173 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + +LY L + + S +IL E + +S Sbjct: 174 PQRGM------------PAHLY-----LPGQHGGVWNEQALIGSKSVILCESLIXAMSFW 216 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 AG +NV ++ G R + ++++ FD D G AA + L Sbjct: 217 VAGWRNVTAAYGVXGFTDDHRRAFAQHEIXQVLIAFDNDXAGNAAA---VRLAAELAAMQ 273 Query: 346 NRVNFVLLSRGEDPDSFIRC--YGKTAFEKLIVESLPLVD 383 ++ +G D + ++ + F L+ + P+ D Sbjct: 274 IDAFRIVFPQGMDANGWLCRVAEPEREFGLLVESAQPMRD 313 >gi|294672894|ref|YP_003573510.1| DNA-binding protein [Prevotella ruminicola 23] gi|294472179|gb|ADE81568.1| putative DNA-binding protein [Prevotella ruminicola 23] Length = 341 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ + +PI ++ + + + + C H++K PS H N K Sbjct: 1 MKYNELDLQKIRE-MPIFDVCSKLGITLKGKGKITKRT----LCWHHNDKHPSMHINKDK 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 Y CF C GD + + F+E+ L V Sbjct: 56 NIYKCFVCGEGGDVIKLVQEYENLDFLEACDWLVKEFDV 94 >gi|33322563|gb|AAQ07012.1|AF496332_1 DNA primase [Lactobacillus delbrueckii subsp. lactis] Length = 261 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 79/251 (31%), Positives = 137/251 (54%), Gaps = 15/251 (5%) Query: 115 TDLIRLIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + + A DF+ L +R Y +RG++ ++ FK+GYAP L +L Sbjct: 8 ESFDAMHKEAADFYQKVLMTTKIGERGLEYARKRGLNDDLLKHFKIGYAPGKSDLLLTYL 67 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-ESVK 232 R +G++++++ E+GL + + +DRFR+RL+FP+ G +AF GR +S E K Sbjct: 68 RGEGYTDDQLAESGLFVKSQDG-RLFDRFRDRLMFPMSDESGHPVAFSGRRISDDPEEPK 126 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 YLNSPET +F+K L++F A + +K ++L EG+MDV+S +AGV+ Sbjct: 127 YLNSPETSIFNKSDLLFHFSEAKKHARK----------EGHLVLFEGHMDVISAYKAGVK 176 Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 ++S+GT+LT+ Q+ ++ +++ ++V+ +DGDD G A + + L V Sbjct: 177 TGIASMGTSLTQQQVYMIRRITKQVVINYDGDDXGQHATERXVGLFKQAGNFDLGX--VX 234 Query: 353 LSRGEDPDSFI 363 L DPD ++ Sbjct: 235 LPDKLDPDEYV 245 >gi|327400620|ref|YP_004341459.1| DNA primase catalytic core domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316128|gb|AEA46744.1| DNA primase catalytic core domain protein [Archaeoglobus veneficus SNP6] Length = 1117 Score = 106 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 68/406 (16%), Positives = 136/406 (33%), Gaps = 33/406 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS-FHCNDSK 59 M + ++++ + + +LI + G+Y P H T + N Sbjct: 1 MVDKKALLEEIRSKLRLEDLID------LTGFKLIGGEYRGPHPVHGSTTGTNLAVNLDN 54 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCS-----------FIESVQRLAAIAGVPLPV--VDPK 106 +YCF C GD L++L+ G F E ++ G+ D + Sbjct: 55 QVWYCFRCQSGGDALAWLAVQEGLIDCSEADDIAHVFPEVLRIACERLGIDFNTTPEDRR 114 Query: 107 IEKKEKIQTDLIRLI-EVATDFFHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPD 164 +K + + L+ + + A FF L++ D + + +E F +GY P Sbjct: 115 AWRKLREEEQLLEAMFKEALAFFREQLEDCPDVKEWIREKYGLSWNDELLEKFGIGYCPP 174 Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 L +HL K + ++ D F R++FP RG+ F R Sbjct: 175 DGDRLAKHLITKFGEVNALKTGLII---PTKDGYRDFFAGRVVFP-YFVRGKPAYFIARQ 230 Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 + E + K N + +++ I + +++ EG D + Sbjct: 231 TPWTPDG---PTKEAKYLKQLKKSDNHQYVSSLVEEPIYGIDSLRGAKEVVITEGIADAI 287 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 + G +S + T + L K I + D ++ G L Sbjct: 288 TAIANGFP-AISPVTTRFKAEHVPDLQKYVRGRTIYIVNDNEESGAGLRGALAILRSIEG 346 Query: 343 IPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + + D + + + F +L+ +++P + L + Sbjct: 347 DARLVILPRPEGIEKIDVNDYFKALTAEEFRELLDKAVPKEEALLR 392 >gi|167957178|ref|ZP_02544252.1| DNA primase [candidate division TM7 single-cell isolate TM7c] Length = 350 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 153/396 (38%), Gaps = 47/396 (11%) Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + KYLN+P+T+L+ K +++ A ++ + ++VEG +DV+S Sbjct: 1 PNAPKYLNTPQTLLYDKSWHVFGLAQAKESIR----------QHDYAVIVEGNIDVVSSH 50 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 QAG+ VV++ GTA+T + L+++ + S I L FD D GL A +AI + G Sbjct: 51 QAGINYVVATAGTAMTIHHLKIIGRFSKNIRLAFDSDKAGLAATERAISIAQ---EAGID 107 Query: 348 VNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 ++ + L +DPD I+ ++ I P VD + ++ +N +T + Sbjct: 108 LSVISLPDYAKDPDELIQ-RDPKLWQGAIDAYEPAVDWILRQYYKNNDISTAAGKRAYTT 166 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 I++++D R +Y + + ++++ + + + R Sbjct: 167 AGLAVIHNLQDPVERDHYLRKMAEKIETDIEVLRAKMKN-----------NSDTEIAHRK 215 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + K ++ E LL I + + E +I + + L + L ++ Sbjct: 216 VVKVNPQNKSTQSEFELEDNLLALGITNKYVCDLILNEPIEI-FRGDNQYNLVNSLKNNL 274 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ + LL + D + EA+ L Sbjct: 275 LDLQNP----------PEYVKILLLRADARYAGWSDQDCRNEASR----------LIRRI 314 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 + ++KE + + G+ KT L+ + Sbjct: 315 KDEYKKQKKELLTAALRDAEDVGDDAKTRELLKKIQ 350 >gi|225350721|ref|YP_002720706.1| DNA primase-like protein [Brachyspira hyodysenteriae WA1] gi|225216405|gb|ACN85138.1| DNA primase-like protein [Brachyspira hyodysenteriae WA1] Length = 403 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 78/436 (17%), Positives = 153/436 (35%), Gaps = 43/436 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + I D+ + I ++ R + + A CPFH++ PS N +Y+CF Sbjct: 2 NKIDDIKRYYSIIDIA------KRLGFEIDRNN-KAICPFHNDTNPSLSFNIKDNYYHCF 54 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 SC GD++ + +L CSF E++ + G ++ KKE Sbjct: 55 SCGASGDNIKLVQEVLHCSFNEAINFI---TGNNYQYINKSNIKKEITNDKFKIDYSNIY 111 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ--KGFSEEKI 183 F L N + YL++R I + + K+ P + +++ + ++E+ + Sbjct: 112 KTFVDLLNN---EEAFQYLEKRCITKNQVIEHKIKNIPKDKKEQFLIIKKLLEVYNEKDL 168 Query: 184 IEAGLLIDGDNSATSY-DRFRNRLIFPIRSSRGQ-VIAFGGRTLSKGESVKYLNSPETIL 241 I +G++ Y +++RLI P + G+ + + GRT+ + Sbjct: 169 INSGIISKSKEYNNLYLFHYKHRLIIPYFNIDGETINSIQGRTIDEDI------------ 216 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 K K L+N SI + II+ EG +D LSL + G + S T Sbjct: 217 --KPKYLFN-----KNANDSIYNIDKIGDIKDIIICEGVIDCLSLERLGYNAIALSGATK 269 Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361 + + + + I D D G + + NF +D + Sbjct: 270 INILRDYPILEKY-NIYSFSDNDKAGKKLIKDIYNFNNYKGTF-LISNFSDDKEVKDINE 327 Query: 362 FIRCYGKTAF--EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + F + + L L + + + + + + + K Sbjct: 328 LLIKSQVKKFNINNIEYKYLELKNDKICILDYYIFTKNELKYIKKSNDFERTLYLLTEDK 387 Query: 420 LR---YYYSQAIRDRL 432 + Y + + + Sbjct: 388 KKLTEEEYIKKYGELI 403 >gi|58699769|ref|ZP_00374410.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533714|gb|EAL58072.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] Length = 225 Score = 104 bits (259), Expect = 4e-20, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 99/213 (46%), Gaps = 17/213 (7%) Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 V NSPE+ LF K +NLY AL+ ++K I++VEGYMD ++L QA Sbjct: 23 QVTITNSPESQLFKKRENLYGLNFALSEIRKK----------QHILVVEGYMDTIALHQA 72 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 G+ N V+ LGTA++ Q++ LW+ + I +C DGD G AA + +L L L PG + Sbjct: 73 GISNAVAPLGTAISAEQIKNLWRFAKEISICMDGDSAGRHAATRVAELALPILEPGYTLK 132 Query: 350 FVLLSRGEDPDSFIR--CYGKTAFEKLIVESLPLVDMLWKRE-----TENRSFNTPDERA 402 FV L +DP Y K + S L +N P++ + Sbjct: 133 FVTLPSNKDPYDICNELEYKKEDVLTALDHSTKLHSEYLWHHIIDSNLQNYEKLAPEKYS 192 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 LE +N I + +R YY ++ +L Sbjct: 193 ILEHKFMEYVNTISNSSIRRYYRDYFYNKASEL 225 >gi|168184390|ref|ZP_02619054.1| DNA primase [Clostridium botulinum Bf] gi|182672551|gb|EDT84512.1| DNA primase [Clostridium botulinum Bf] Length = 253 Score = 104 bits (259), Expect = 5e-20, Method: Composition-based stats. Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 28/241 (11%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYY 63 + I+ + I + +IG + R+ Y CPFH++ K SF SKG + Sbjct: 8 EELIEKIKS-ISLEIIIGTRIQLIRKG-----MHYMGICPFHNDHKIGSFIVTPSKGIWK 61 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEK-------IQ 114 CF+C V GD + F++ +++E+ + + + ++K K + Sbjct: 62 CFTCTVGGDAIQFIALYDKVNYVEAAFNIGLEFNLISSVEYEQYFSKRKYKAKEIKNMQK 121 Query: 115 TDLIRLIEVAT------------DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 +++ + + F +H + + Sbjct: 122 KYMVKTNNEKSIKANSYTLNKVYEIFTSCCDIYSAHYIHLLTKRQIAPHRINRDYFTFPT 181 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + L + G++E+ + + IR+++G+++ Sbjct: 182 RKIWNQFVDKLNKCGYNEKILESIPGFYFDIKRNQYTFAQYKGIGIKIRNTKGEIVGIQI 241 Query: 223 R 223 R Sbjct: 242 R 242 >gi|158320328|ref|YP_001512835.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs] gi|158140527|gb|ABW18839.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs] Length = 891 Score = 103 bits (256), Expect = 9e-20, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 139/502 (27%), Gaps = 83/502 (16%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 ++ + CPFH++K PSF N G Y C +C KG+ ++FLS S E+ Sbjct: 27 KKGK-ISGDNLVGLCPFHNDKKPSFGANLKTGVYNCLACGEKGNAITFLSKTQNISNKEA 85 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 + L AG+ D K + Y Sbjct: 86 YKILLKEAGL---YEDKTNSKTQNS----------------------------TYSTNSI 114 Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 ++ S + K E+ E L + S + + Sbjct: 115 NPINSTNPVDSTKLIKLTNSNKYTKPTKYTVEDYCKEKRLDVGFIRSLGIRNGRLG-ITI 173 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 P G+VI+ R + + NLY K + Sbjct: 174 PYMDEAGKVISNRQRYQKDHPTRFSWARGSKV------NLYGL-----------WKLNKV 216 Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVS-SLGTALTEYQLRLLW------KLSPRIVLCF 321 + +ILVEG D +L G++ + + P I + Sbjct: 217 REVNRVILVEGESDCHTLWCHGIEEALGVPGAITFHLDWVDKFKFSSEEGSTFPHIYIHH 276 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYG---KTAFEKLIVE 377 +GD K + ++ G S G +DP ++ ++ E Sbjct: 277 EGDAGADAFVDKICNALVKKDFKGRIYKISCSSLGAKDPSELHILDPDSFSEKWKVILNE 336 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELE--------IHLKNCINHIKDQKLRYYYSQAIR 429 + + + E +N N P + E I + N I R I Sbjct: 337 AEEIDIKSFSLEIDNLIPNAPVRLKQPEGFRVSENGIEMINYKTGIPQLICRTPIL--IS 394 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +RL+ L + R K + + Q L ++ Sbjct: 395 NRLKSLDSYDEKIEITFYRDKKWHRVTEQRSVIFQARTIIKLADVGVTVTSENA------ 448 Query: 490 TLINHPAILQEQYQELADIRYD 511 L + ++L +D Sbjct: 449 ------KFLVKFLEKLEAENFD 464 >gi|71899658|ref|ZP_00681812.1| TOPRIM [Xylella fastidiosa Ann-1] gi|71730610|gb|EAO32687.1| TOPRIM [Xylella fastidiosa Ann-1] Length = 340 Score = 103 bits (255), Expect = 1e-19, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 143/366 (39%), Gaps = 39/366 (10%) Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + LY + Q R +I+VEGYMDV+SL Q G+ V++LGTA T Sbjct: 1 SRELYGLWQVRQAHQNIER----------LIVVEGYMDVISLFQFGITQAVATLGTATTV 50 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 LL++ +P + CFDGD+ G +A ++A++ +L + G + F+ L GEDPD+ +R Sbjct: 51 EHAELLFRNTPDVYFCFDGDNAGRKAGWRALESILPRMKEGRQAFFLFLPDGEDPDTIVR 110 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AF + + +++PL + + + + +T D +A L + + I + Sbjct: 111 KEGKNAFNERLKQAIPLSQFFFDALSSDIALHTLDGKARLAERARPLLMKIPEGAFNDLM 170 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q + + P +S +L + Sbjct: 171 RQRLAHLTGV-----------------------NIAHPGPAPAATSRPATRLPAQKRNLI 207 Query: 485 AALLLTLINHPAILQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + ++ P++ LA + L ++ + + Sbjct: 208 HTTIAIILQQPSLAMTLNTPYPLAINDLKQPGIAL-LLELLDLIHQRPEITTGALLEHFT 266 Query: 543 ERGFGELLKQLDRQVRDAG--LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ER LL+ L Q W+ + + +++ Q + L++ ++I+K Sbjct: 267 EREEYVLLQTLATQTMPGDTATWTQELQGAMTQMQKQLLQQRLNALHTKQLTQPLDDIDK 326 Query: 601 -QIAQV 605 ++ ++ Sbjct: 327 YELREL 332 >gi|168236494|ref|ZP_02661552.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197290333|gb|EDY29689.1| DNA primase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 132 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I +I +V +R+ N Y CPFH EKTPSF + S+ + C C GD Sbjct: 2 TDILEIIRPHVHLERQGKN-----YVGLCPFHQEKTPSFTVDPSEQTFCCLGCGAHGDAG 56 Query: 75 SF--LSALLG 82 F L + G Sbjct: 57 EFAKLMLMKG 66 >gi|256423768|ref|YP_003124421.1| zinc finger CHC2-family protein [Chitinophaga pinensis DSM 2588] gi|256038676|gb|ACU62220.1| zinc finger CHC2-family protein [Chitinophaga pinensis DSM 2588] Length = 899 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 61/386 (15%), Positives = 125/386 (32%), Gaps = 52/386 (13%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS- 66 I + + +S ++ Y K + CPFHD+KTPS YCFS Sbjct: 4 IAAIKQQLTLSQVLMHY-GLKPDKHLRLH------CPFHDDKTPSLQVYYKTQTCYCFSS 56 Query: 67 -CHVKG---DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 C G D + F+ G S E++ + + G + ++ ++ Sbjct: 57 NCKTHGKSLDVIDFVMHKDGISKREAILKCKELIG----GSTSAVAAVPVSRSG---ILN 109 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDS-HAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +F +++ N++ + + I + R Sbjct: 110 YMFTYFKNAIHNSKPAQAYLQSRGLDITRLEVGYNTAQFHHGARRDEALI----SACVSV 165 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL 241 ++ A + + + + F +R S G++ R+ ++ + Sbjct: 166 GLLSAWGSNTREGTQAYKPFGKYCIAFALRDSGGEISGMYFRSTVNDSDQRHYYLKD--- 222 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG-----VQNVVS 296 +K + +++ + +IL E +D +L Q + Sbjct: 223 -----------------RKGLYPGYPKSAITRLILTESVIDAATLLQHHEIGKGYGILAC 265 Query: 297 SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 LT + I+ FDGD+ G R A + L +P +++ ++L Sbjct: 266 YGTNGLTSEHEAAIVGLGQLQEIIFAFDGDEAG-RKAVEKYSSSLKERLPYVQLSSIVLP 324 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLP 380 GED +S + F +L+ Sbjct: 325 DGEDINSMGVSHTAEVFTELLQSRTS 350 >gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424] gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424] Length = 1145 Score = 101 bits (250), Expect = 5e-19, Method: Composition-based stats. Identities = 86/564 (15%), Positives = 162/564 (28%), Gaps = 60/564 (10%) Query: 32 TNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFL--SAL------LG 82 + G PF + K+ SF GF+ G ++ + Sbjct: 44 KSDATGKLRGIPPFRESKSGTSFTVFPDGGFF-DAGDGFAGSPADYIHSMRVGRWERARK 102 Query: 83 CSFIESVQRLAAIAGVPLPVVDPKIEKKEK--IQTDLIRLIEVATDFFHHSLKNARDKRL 140 F+ +V+ L + +P P DP + EK + ++ L + + Sbjct: 103 ADFVAAVRELCELGSIPFPERDPSPSEIEKAVKEETRRAILRETIKICSDLLWSEFGREA 162 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL + R L ++L+ K FS +I A + Sbjct: 163 RQYLITERGLTEQQIKDFNLGYYRKRADLVDYLKHKKFSASEIKGAAVA---------LT 213 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 + +I P G+V+ GR K + + A+ + Sbjct: 214 SWEGYIIIPWLDENGRVLTLYGRYSQKTAPEGRPKTLALPGISTKRAPLYLDRAIASNHR 273 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 +I VEG D L L G VS + + + Q+ L + V Sbjct: 274 ------------EVIFVEGVFDALLLQALGETRAVSGVAASFSNEQIECLKRNRIEKVYH 321 Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL-SRGEDPDSFIRCYGKTAFEKLIVESL 379 DP ++ G V DPD F+ G TA ++L+ +S Sbjct: 322 L--GDPDGGGIGGTNSNLMRLTRSGISVYVPPTLPDVLDPDEFVLRKGITALKQLLEQSE 379 Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 K+ ++ + ++ I Y + Sbjct: 380 HGYRWKAKQIVAEHGNDSDEAIEKIFSIAVAYSRTIPS-----QYKLEEETFFWATIRNS 434 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS--LREAALLLTLINHPAI 497 + E K AR+ D + Q V + L E L+ Sbjct: 435 LGELDPEAFRAKLKARYGDTPSIPTKSGQDLKVPDWAQSSIAKWLAERY--RPLLAFNTD 492 Query: 498 LQEQYQ--ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--------GFG 547 ++E ++ + + + + +W + ++ +IH++L E+ GF Sbjct: 493 IEEWFRYSAINEGIWTKDPKYYIWQIIITELE-----TLADIHEQLHEKKKRPKYGSGFI 547 Query: 548 ELLKQLDRQVRDAGLWSATTEANI 571 ++ L + W Sbjct: 548 SGIEMLLKAYLPVRGWDEQPGLLP 571 >gi|167036519|ref|YP_001664097.1| zinc finger, CHC2-family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114950|ref|YP_004185109.1| zinc finger, CHC2-family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855353|gb|ABY93761.1| zinc finger, CHC2-family protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928041|gb|ADV78726.1| zinc finger, CHC2-family protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 203 Score = 99 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 6/123 (4%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + IP+ I +Y K +W CPFH++K PS + +YCF C Sbjct: 12 IKDSIPLVQAI-EYYGLHPIKR---GRYHWIKCPFHNDKNPSLAIYEES--FYCFGCGAH 65 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + F++ +E+V RLA VPLP ++++K IR + ++ Sbjct: 66 GDVIDFVARYFNLEPLEAVYRLAEDFNVPLPEERRLTKEEKKKIQQRIRQKQEEDKLYND 125 Query: 131 SLK 133 LK Sbjct: 126 FLK 128 >gi|319788811|ref|YP_004090126.1| DNA primase [Ruminococcus albus 7] gi|315450678|gb|ADU24240.1| DNA primase [Ruminococcus albus 7] Length = 207 Score = 99 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 9/93 (9%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + +D+ I + +L+ Y N +G + ACCPFH+E+ PSF + Y+CF Sbjct: 3 NIFQDIKDRIDLKDLVRYY------GLNVDRGGF-ACCPFHNERNPSFKVYEDH--YHCF 53 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 C GDH F+ L G S IE+ ++++ G+ Sbjct: 54 GCGAHGDHTDFVEKLYGVSNIEAAKKISHDFGL 86 >gi|228983124|ref|ZP_04143383.1| DNA primase [Bacillus thuringiensis Bt407] gi|228777307|gb|EEM25615.1| DNA primase [Bacillus thuringiensis Bt407] Length = 482 Score = 99 bits (247), Expect = 1e-18, Method: Composition-based stats. Identities = 72/490 (14%), Positives = 146/490 (29%), Gaps = 80/490 (16%) Query: 5 RDFIKDLLIHI---PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKG 60 +FI++++ + PIS+++ +D RR + A CPFH++ K SF ++ KG Sbjct: 6 EEFIEEVIAKVKQLPISSVMETRIDVVRRG-----HSFQAKCPFHNDNKLGSFSISNKKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI------------- 107 + CFSC GD + F++ SF S ++A G+ + Sbjct: 61 IFKCFSCDEGGDAVKFIAKYDKISFGASAIKIALEFGLITNEEYKEAFGDKAEVDVAETV 120 Query: 108 ----------EKKEKIQTDLIRLIEVATDFFHH-SLKNARDK---RLHYYLDERGIDSHA 153 E+ + D+ L V + F SL DK YL RG+ Sbjct: 121 RKTYIASMDKVDYEEERADIEVLHNVFSVFSKGISLCEGHDKLTEEHKAYLKGRGLSDKD 180 Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF----------- 202 IE P + + + E L T + Sbjct: 181 IEEDGYFSFPGRHSAFLTNFYNTMYEEFGYTPEILKDIPGFFCTENCKMDFQTKDGEITV 240 Query: 203 -------RNRLIFPIRSSRGQVIAFGGR---TLSKGESVKYLNSPETILFHKGKNLYNFF 252 + + P+++++GQ+ R + +S + N Sbjct: 241 PIYAYRRQEGICIPMKNAKGQIAGIQIRLDEVKDSSRRYIWFSSTFADAEDRSNMYINGT 300 Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312 GA L + + + + EG + +S G + + Sbjct: 301 GAGAPL---DVVYPEKIKHTTLFITEGRFKARKIASTYGCIAISVQGIGNWRNIEKEIKD 357 Query: 313 LSPR-------IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 + R I + +D D Y + L D + ++ Sbjct: 358 IEERTGYDIKHICIAYDADMSYNINVYNQFKKMTDKLKEEF-----------DKNIYVCM 406 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE--IHLKNCINHIKDQKLRYY 423 + + + + + + + + + ++ K L+ Y Sbjct: 407 WATELGKGIDDILENDKGNMIDKMEKTQFDSYYAQYVKMVTDKEGKKAFKEKPKPLLKAY 466 Query: 424 YSQAIRDRLQ 433 + + + + Sbjct: 467 FDREVLPKFN 476 >gi|154500297|ref|ZP_02038335.1| hypothetical protein BACCAP_03964 [Bacteroides capillosus ATCC 29799] gi|150271029|gb|EDM98303.1| hypothetical protein BACCAP_03964 [Bacteroides capillosus ATCC 29799] Length = 156 Score = 99.6 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 18/133 (13%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ +R ACCPFHD+K PS N+ ++Y Sbjct: 3 ESVFEAVKQSVTVRDAAQIYGIEVNRSG--------MACCPFHDDKNPSMKLNEE--YFY 52 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +++ + E Sbjct: 53 CFGCGATGDVIDFTARLYNLSPKEAAEKLAQDFGLAYDSQAPPRRRYIRQKSEAQKFKED 112 Query: 124 -------ATDFFH 129 D+FH Sbjct: 113 RDHTFRVLADYFH 125 >gi|260891954|ref|YP_003238051.1| zinc finger CHC2-family protein [Ammonifex degensii KC4] gi|260864095|gb|ACX51201.1| zinc finger CHC2-family protein [Ammonifex degensii KC4] Length = 200 Score = 99.6 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 8/92 (8%) Query: 10 DLLIHIPISNLIGQY---VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 L + + +I + ++ R+ + ACCPFH ++ PSF+ N +K ++CF Sbjct: 12 QLAREVSLLEVIRHFAPGLELTRKGR-----ELVACCPFHPDREPSFYVNPAKNVFFCFG 66 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 C GD + F++ LG +E+ + + G+ Sbjct: 67 CGAGGDGVEFVARTLGLGRLEAARAIVQEFGL 98 >gi|33595198|ref|NP_882841.1| putative DNA primase [Bordetella parapertussis 12822] gi|33565275|emb|CAE36074.1| putative DNA primase [Bordetella parapertussis] Length = 356 Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 64/382 (16%), Positives = 106/382 (27%), Gaps = 68/382 (17%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDSKG 60 + L +PI+++ V R A C F HD TPSF + ++ Sbjct: 16 LSDQALARLRE-LPIADVASA-VGITLRGN-------KAMC-FNGHDTATPSFTVSKARN 65 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV---PLPV----------VDPK- 106 + CF C GD ++ + + G F+++ L G+ +P PK Sbjct: 66 TWRCFGCGEYGDAITLVQKIHGLRFMDACNWLCHHFGIIGGDVPYGLRAHSLSRVTSPKP 125 Query: 107 -----IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161 +L + SL YL GI F + Sbjct: 126 VNPLPSAPSTSPDFELYTWLVARCGPVKASLGTT-------YLQTHGITPDLALRFGVVE 178 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 D + RE R G + + + F Sbjct: 179 LIDPVRAYRELERHWGPDRIRSAGLSGSRRALSWSGYALIFP-------FKFDAITQYLQ 231 Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 R L L+ +F+ + + S + + EG Sbjct: 232 VRCLQISRKFLGLSGIPKPMFNSQRL------------------SQLRPGSLLHICEGVP 273 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 D +S+ +G+ V T+ + L +V DGD G + L Sbjct: 274 DAISMEGSGLAAVAVLGATSFRSEWVEELLPF--DLVGVPDGDAAGEKFMKC---LANEF 328 Query: 342 LIPGNRVNFVLLSRGEDPDSFI 363 + FV+ G D I Sbjct: 329 RARSKSIRFVVPPEGMDASDVI 350 >gi|256751908|ref|ZP_05492779.1| zinc finger CHC2-family protein [Thermoanaerobacter ethanolicus CCSD1] gi|256749213|gb|EEU62246.1| zinc finger CHC2-family protein [Thermoanaerobacter ethanolicus CCSD1] Length = 203 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 9/130 (6%) Query: 7 FIKD---LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I + IP+ I +Y K +W CPFH++K PS + Y+ Sbjct: 5 TIDKFTLIKDSIPLMQAI-EYYGLHPIKK---GKYHWIRCPFHNDKNPSMVIYEE--AYH 58 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F++ +E+V RLA + LP ++++K I+ + Sbjct: 59 CFGCGAHGDVIDFVAEYFNLEPLEAVYRLARDFNIFLPEEKRLTKEEKKKIQQCIQQKQE 118 Query: 124 ATDFFHHSLK 133 ++ LK Sbjct: 119 EDKLYNDFLK 128 >gi|322420475|ref|YP_004199698.1| DNA primase catalytic core domain-containing protein [Geobacter sp. M18] gi|320126862|gb|ADW14422.1| DNA primase catalytic core domain protein [Geobacter sp. M18] Length = 1100 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 73/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68 L+ + I ++ + + R T CP H ++ S H K +YCF C Sbjct: 14 RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71 Query: 69 VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109 V GD L + + G S ++ LA AG+P + E Sbjct: 72 VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRFGLSQERLAQTEA 131 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + + +H LK + + L + + + I+ +GYA ++ ++ Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAV 190 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + +G ++ + A + F R++FP SRG+V+ GR Sbjct: 191 AQLTEGEGGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249 Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 V + + + + + Y N L +D +I+ EG D L+L Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLAKPGKVIITEGVTDCLALM 307 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G+ V RL+ V ++ A+ Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 V L P S + + + + + + R L Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFSLAASVGPKELAKLLSGRPAEEIQAAEALLA 422 Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430 K + ++I R + + + + Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447 >gi|255316548|ref|ZP_05358131.1| DNA primase [Clostridium difficile QCD-76w55] Length = 457 Score = 98.4 bits (243), Expect = 3e-18, Method: Composition-based stats. Identities = 66/462 (14%), Positives = 135/462 (29%), Gaps = 58/462 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGFYY 63 ++ I+ + + I I +D CPFH++K SF + +K + Sbjct: 8 KEIIELVREVVGIDE-IESRMDLKNG---------KGLCPFHNDKRIGSFSVSKNKKIFK 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESV--------------------QRLAAIAGVPLPVV 103 CFSC GD + F+S +++ES ++L+ + + Sbjct: 58 CFSCGTGGDIIKFVSLFENITYVESAFKIALEKRLISEEKYKQILSKKLSESENLKIEKT 117 Query: 104 DPKI-----EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMF 157 K + K+ L ++ + F + KN ++ +L ++RG+ IE Sbjct: 118 YIKQNLIEHQSKKADNETLNKIYSLFIKGFDYLGKNRLNEEDIKHLKNKRGLTDKEIEDT 177 Query: 158 KLGYAPD----SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213 P+ + S I +N R + PIR+ Sbjct: 178 GYFSFPNRYILKPFLTDLEKNNIKLSTLNNIPGFFYNKKNNRYDFTTIKRGGIAIPIRNE 237 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 Q+I R + + + + + Sbjct: 238 FKQIIGIQIRKNVVNSHESRYIWFSSAFAQENE---GYKFGTSAGVSVDVIYPEELKVKT 294 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS--------PRIVLCFDGDD 325 I + EG+ + + +S G + ++ + P I + FD D Sbjct: 295 IFITEGHFKAKKIAKEYNSIAISIQGVCAWGNIIEVIKNIQKLYSEVELPYIYVAFDADM 354 Query: 326 PGL----RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 + A K + + G+ D I K +K+ + + Sbjct: 355 GYNLAVYKQALKLGEALQKIENKKIFYVLWDSDFGKGIDDLIDNGKKDMVDKISFDEMNT 414 Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + + + + K I ++L+ Y Sbjct: 415 YYNKYIEILISLFGPDEKKYPKEAK--KELYEQIILRQLKKY 454 >gi|289812425|ref|ZP_06543054.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 169 Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 2/166 (1%) Query: 98 VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157 +P + + + +L +L+ DF+ SL + K YL +RG+ + I+ F Sbjct: 1 MPYEAGTGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRF 60 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 +G+AP + + ++ +++AG+L+ + ++YDRFRNR++FPIR RG+V Sbjct: 61 AIGFAPPGWDNALKRFGNNSDNKALLLDAGMLV-NNEQGSTYDRFRNRVMFPIRDKRGRV 119 Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 I FGGR L ++ KYLNSPET +FHKG+ LY + A Y + R Sbjct: 120 IGFGGRVL-GNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQR 164 >gi|295099472|emb|CBK88561.1| DNA primase (bacterial type) [Eubacterium cylindroides T2-87] Length = 1133 Score = 97.7 bits (241), Expect = 6e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L S E+ ++LA G+ Sbjct: 31 MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFNLSPKEAAEKLAQDFGLI 87 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 P + + +T+ + E + Sbjct: 88 YDSQAPPRRRYVRQKTEAQKFREDRQRCYR 117 >gi|313623756|gb|EFR93896.1| DNA primase [Listeria innocua FSL J1-023] Length = 222 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 30/232 (12%), Positives = 82/232 (35%), Gaps = 25/232 (10%) Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS---------- 463 + R Y + + D + + + + K +++ P Sbjct: 1 KLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNQSYNEPPIDDSFMGMIP 60 Query: 464 ---QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 ++ S + + E L+ ++ + Q L D + ++ Q L++ Sbjct: 61 QEDSEMLFSFEQPTQKLSAHTTAEQQLMKAMMENRDSFLLIKQLLGDTEFYHDNYQALYT 120 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +L F E P + + + G L+ L+ + + ++ Sbjct: 121 YLIGYFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFED 169 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + KRF+ L + K+E+E+Q+A + + E ++ + +++ +++ + Sbjct: 170 YIKSLKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLNNGQ 220 >gi|332653621|ref|ZP_08419365.1| putative CHC2 zinc finger containing protein [Ruminococcaceae bacterium D16] gi|332516707|gb|EGJ46312.1| putative CHC2 zinc finger containing protein [Ruminococcaceae bacterium D16] Length = 1016 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 25/136 (18%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113 CF C GD + F + L S E+ ++LA G+ P + ++ + Sbjct: 52 CFGCGEDGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 111 Query: 114 QTDLIRLIEVATDFFH 129 + R++ +D++H Sbjct: 112 RQRCYRVL---SDYYH 124 >gi|160914083|ref|ZP_02076310.1| hypothetical protein EUBDOL_00096 [Eubacterium dolichum DSM 3991] gi|158434016|gb|EDP12305.1| hypothetical protein EUBDOL_00096 [Eubacterium dolichum DSM 3991] Length = 1133 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + + + + E Sbjct: 52 CFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRRYVRQKNEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQRCYR 117 >gi|282600626|ref|ZP_05979268.2| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM 15176] gi|282571644|gb|EFB77179.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM 15176] Length = 1094 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 25/136 (18%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y + R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAELYGIKVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113 CF C GD + F + L S E+ ++LA G+ P + +K + Sbjct: 52 CFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111 Query: 114 QTDLIRLIEVATDFFH 129 + R++ +D++H Sbjct: 112 RQRCYRVL---SDYYH 124 >gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822] gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822] Length = 999 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 85/535 (15%), Positives = 156/535 (29%), Gaps = 49/535 (9%) Query: 32 TNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALL--------G 82 G PF K+ SF GF+ G ++ ++ G Sbjct: 44 RPDATGKLRGVPPFRHSKSGTSFTVFPDGGFF-DAGDGFAGCAADYIHSINRGGWERARG 102 Query: 83 CSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140 F+ +V+ L +A +P P P+ +K ++++ L + Sbjct: 103 RDFLNAVKELCELATIPFPEKTLSPQEIEKAHKWETKLQILAATNKICSDVLSSELGIVA 162 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 YL + R + ++L+ KGF+ +I EAG+ Sbjct: 163 REYLINERGLTEQQIKDFNLGYYRKRSDVVDYLKHKGFTATEIKEAGVAQQK-------- 214 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 + + P RG+ + GR K + ++ AL + Sbjct: 215 -WEGYITIPWLDERGRPLTLYGRYHKKVAPEGLPKTLALPGTSTKRSPLYLDRALAAGHR 273 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 +I VEG D L L G VVS + + + Q+ L + V Sbjct: 274 ------------EVIFVEGVFDALLLQALGETRVVSGVAASFSNEQIETLKRNRIEKVY- 320 Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 GD G +L+ + L G DPD F+ G A + LI +S Sbjct: 321 HLGDPDGGGIGGTNSNLMRLSREGISVYVPPTLPDGLDPDEFVNLQGIDALKSLIDQSEH 380 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 K+ N+ ++ I +Y + ++ Sbjct: 381 GYRWKAKQIINEYGTNSDAAIEKILTEAVAYSKTIP-----AHYKLEAETFFWNTIRGHL 435 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPAILQ 499 E + R + P+ L + L E ++ ++ Sbjct: 436 GEDAEAFRASLEMKYGNSSLIPNDEKDNLGLPVWAASNIAVWLAERY--RCVLAWNTQIE 493 Query: 500 EQYQELADIR--YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 E Y+ A + +W + ++ +I Q+L E+ Sbjct: 494 EWYRYAAQSEGVWSKEPKYYIWQIIITELE-----TLADIRQQLDEKNQRPTYSS 543 >gi|269926865|ref|YP_003323488.1| zinc finger CHC2-family protein [Thermobaculum terrenum ATCC BAA-798] gi|269790525|gb|ACZ42666.1| zinc finger CHC2-family protein [Thermobaculum terrenum ATCC BAA-798] Length = 654 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Query: 4 PRDFIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 P I+ + + +++L+ ++ + R G A CPFH EKTPS S+ + Sbjct: 29 PTTDIRQIKSKLDLASLVERHAGELRREG-----GYLKALCPFHKEKTPSLAIYPSRQRW 83 Query: 63 YCFSCHVKGDHLSFL 77 CF C KGD + FL Sbjct: 84 QCFGCDRKGDVIDFL 98 >gi|144138|gb|AAA73233.1| DNA primase [Buchnera aphidicola] Length = 319 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 62/324 (19%), Positives = 139/324 (42%), Gaps = 27/324 (8%) Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 ++VEGY+DV+ L Q ++ VVSSLGT++T+ +++L++ + ++ C+DGDD G A+++ Sbjct: 1 LVVEGYIDVIMLTQYNIEYVVSSLGTSITKEHIQILFRHTNTVIYCYDGDDAGRNASWRT 60 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 + + L ++ + F++L EDPD+ I+ G+ F+ I +L + +K +N Sbjct: 61 LKIALPYISDKKNIKFIILPNNEDPDTIIKKEGQKKFQLRIDNALTMSKFFFKNILKNVD 120 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 ++ D++ L + IN I +R Y Q + + + + KK+ Sbjct: 121 LSSDDDKFHLSVRALPLINCISSDTIRIYLRQILARTIGIVDDYQFEKFLYEKERKKKSL 180 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + + + P L+ LI +P + + + +++N + Sbjct: 181 QFQIKHTPM---------------------RTLIGLLIQNPNLARLVP---STKKFENEK 216 Query: 515 LQKL--WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 +Q L + + + F ++ + +LK L + + + Sbjct: 217 IQGLPIFLEILKTCSDNPNFNTGQLLEFYRYSKIINILKILSKWDHMI-IKEKIQNMFLD 275 Query: 573 DVRQGYQQALALYKRFRLLSRQKE 596 ++ Y + L + + + + Sbjct: 276 LLKNTYSKILEKRQEKLIAKERIQ 299 >gi|166033470|ref|ZP_02236299.1| hypothetical protein DORFOR_03196 [Dorea formicigenerans ATCC 27755] gi|166026655|gb|EDR45412.1| hypothetical protein DORFOR_03196 [Dorea formicigenerans ATCC 27755] Length = 1094 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAEFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +T+ + E Sbjct: 52 CFGCGADGDVIDFTAKLFNLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFREN 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQRCYR 117 >gi|302343260|ref|YP_003807789.1| DNA primase catalytic core domain protein [Desulfarculus baarsii DSM 2075] gi|301639873|gb|ADK85195.1| DNA primase catalytic core domain protein [Desulfarculus baarsii DSM 2075] Length = 1104 Score = 96.5 bits (238), Expect = 1e-17, Method: Composition-based stats. Identities = 75/445 (16%), Positives = 140/445 (31%), Gaps = 35/445 (7%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68 L+ I I ++ + + R T CP H ++ S H K +YCF C Sbjct: 14 RLVTEIDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71 Query: 69 VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109 V GD L + + G S ++ LA AG+P + E Sbjct: 72 VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + + +H LK + + L + + + I+ +GYA ++ ++ Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAV 190 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + R + ++ + A + F R++FP SRG+V+ GR Sbjct: 191 AQLTRGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249 Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 V + + + + + Y N L +D +I+ EG D L+L Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G+ V RL+ V ++ A+ Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 V L P S + + K + + + R L Sbjct: 368 DTRLVTL-----PLSETQISARQELTKRFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422 Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430 K + ++I R + + + + Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447 >gi|313618910|gb|EFR90771.1| DNA primase [Listeria innocua FSL S4-378] Length = 222 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 80/225 (35%), Gaps = 25/225 (11%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-------------Q 464 R Y + + D + + + + K +++ P Sbjct: 5 AVERELYLKQLADEFELTIETLKQQLQQSLKNTHKERQNQSYNEPPIDDSFMGMIPQEDS 64 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 ++ S + + E L+ ++ + Q L D + ++ Q L+++L Sbjct: 65 EMLFSFEQPTQKLSAHTTAEQQLMKAMMGNRDSFLLIKQLLGDTEFYHDNYQALYTYLIG 124 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 F E P + + + G L+ L+ + + ++ + Sbjct: 125 YFAEGNDADPHKFMDSVPDAGMKGLISSLEMVIS-----------PDEQGKTQFEDYIKS 173 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 KRF+ L + K+E+E+Q+A + + E ++ + +++ +++ Sbjct: 174 LKRFK-LEQAKKELEQQLAAFNRENDKENEIRVMLEIVQLNRKLN 217 >gi|31442394|ref|NP_852618.1| putative DNA primase [Peanut witches'-broom phytoplasma] gi|31335129|gb|AAP44294.1| putative DNA primase [Peanut witches'-broom phytoplasma] Length = 379 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 69/367 (18%), Positives = 126/367 (34%), Gaps = 49/367 (13%) Query: 43 CPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG---- 97 CPFHD K+ S N + C+SC D ++ + G F +S+ L Sbjct: 32 CPFHDSKSGLSADINRQNKIW-CWSCGKAFDTMTVYQKITGKDFAQSLTDLTNFYQSTEY 90 Query: 98 --VPLPVVDPKIEKKEKIQT---------------DLIRLIEVATDFFHHSLKNARDKRL 140 + K ++ + + + F+ L Sbjct: 91 QELTASAFTGNESFKLSNNENKALNNFANSNLHLDTILAIWDEISHFYQKQLWATPAALD 150 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 Y L +R ++ I+ F++G+A + +L +L + LL SYD Sbjct: 151 -YLLKKRQLNPLLIKKFQIGFANKNNQNLLNYLENQQADLTPYYAVDLLRKNPKF--SYD 207 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSK------GESVKYLNSPETILFHKGKNLYNFFGA 254 N + P+ G++I + R + N +F Y F A Sbjct: 208 GCLNCWLIPVFDENGKIIHYY-RFHYPAELPYRPKYQALRNLTNQTIFS---IPYGFHYA 263 Query: 255 LNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL--RLLWK 312 + + IL EG+ DVL Q ++NV+ + + K Sbjct: 264 KKAI----------LDTQTAILHEGFFDVLQSYQNQIENVIGLITVSNNFSPFILDFFKK 313 Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372 +++L D D+ GL+ A++ + I + + +D D +R YG ++ Sbjct: 314 YQIKVILGLDNDETGLKTAFRLSQQLKRLNIEN-YIKTIPHYDCKDADELLRKYGLKTYQ 372 Query: 373 KLIVESL 379 K+ +ES Sbjct: 373 KIYLESK 379 >gi|223985011|ref|ZP_03635109.1| hypothetical protein HOLDEFILI_02413 [Holdemania filiformis DSM 12042] gi|223962983|gb|EEF67397.1| hypothetical protein HOLDEFILI_02413 [Holdemania filiformis DSM 12042] Length = 1016 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +T+ + E Sbjct: 52 CFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQQCYR 117 >gi|326390616|ref|ZP_08212171.1| DNA primase [Thermoanaerobacter ethanolicus JW 200] gi|325993294|gb|EGD51731.1| DNA primase [Thermoanaerobacter ethanolicus JW 200] Length = 198 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 11 LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + +I + I Y R+ YW CPFH EK PSF N + CF C V Sbjct: 12 VKENIDLMEAIEYYGFQPIRKGR-----YYWLLCPFHSEKHPSFCIN--GNTFKCFGCGV 64 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 GD ++F+S L I++V RL G+ LP + K + + + Sbjct: 65 HGDVINFVSLLFNLKPIDAVYRLVTDFGIDLPYAKKIDKIYCKAKQNYEDI 115 >gi|308271319|emb|CBX27927.1| hypothetical protein N47_G32510 [uncultured Desulfobacterium sp.] Length = 612 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 89/528 (16%), Positives = 165/528 (31%), Gaps = 85/528 (16%) Query: 34 AVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCFS-CHVKGDHLSFLSALLGCSFIESV 89 Y A CPFH + SF + ++CF CH D + C F E+ Sbjct: 35 TGDKRYSAYCPFHSDNKDSFRVYVNGKDEVRFHCFGACHSDWDIYEIIMLRNKCGFKEAQ 94 Query: 90 QRLAAIAGVP-----------LPVVDPKIEKKE-------KIQTDLIRLIEVATDFFHHS 131 + + G+ +P D + E + ++ ++I ++ +F++ Sbjct: 95 KVWSEYLGIKDFSPFNGKSSHIPEPDTEHEPDDDVSFAEPEVDNEIITALDEGANFYNKL 154 Query: 132 LKNARDKRLHYYLD--ERGIDSHAIEMFKLGYAPDSRYSLRE------------------ 171 L + +K + RG+ I F +GYAP L E Sbjct: 155 LLSNEEKFKDIFAYLLRRGVGKELISKFNIGYAPPYSDELYEGRALIYNFLSRFEDDYKT 214 Query: 172 -------------HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 + + S ++ D F ++IFPI + G + Sbjct: 215 FNPFFKASLVRLLNDETSKAYFYYRSQIDFSKKDMFSNSNGDYFAGKIIFPIYNIDGSIA 274 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 GR ++++ + LY A Y++ +ILVE Sbjct: 275 GIIGRR-PDNRGMRWMKTKTDTSMSTKSWLYGIDKASRYIK----------QYRAVILVE 323 Query: 279 GYMDVLSLCQ----AGVQNVVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYK 333 G D + V+S+LG+ LT+ L +L V+ +DGD+ G + K Sbjct: 324 GIFDYFAFYNILQDQEKPIVLSTLGSHLTKEALNILKSLGVKHFVVAYDGDEAGRKGILK 383 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC-------YGKTAFEKLIVESLPLVDMLW 386 V G L G+DP ++ + + D Sbjct: 384 IASEV-----EGKVYFLGGLKEGQDPYDMLKHAVNAINGFSLDRLMTSASKMQEKTDKPV 438 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE--HS 444 +R + + N + +K + + + D L L + + Sbjct: 439 NIHIMSRGSSKRSDVVFEATDTGNTYDFLKGKSDAKEFIYDVNDFLPLLAYDHSNKVMLD 498 Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + K R +K S+++ + K L +A +L + Sbjct: 499 ENLQQIIKLLEARPEKPKSEKVFTIPVNFLKTEGYDDLGQALILWIRL 546 >gi|332655440|ref|ZP_08421178.1| putative CHC2 zinc finger containing protein [Ruminococcaceae bacterium D16] gi|332515627|gb|EGJ45239.1| putative CHC2 zinc finger containing protein [Ruminococcaceae bacterium D16] Length = 1122 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L S E+ ++LA G+ Sbjct: 31 MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLI 87 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 P ++ + +T+ + E + Sbjct: 88 YDSQAPPRKRYVRQKTEAQKFREDRQRCYR 117 >gi|297618194|ref|YP_003703353.1| DnaB domain protein helicase [Syntrophothermus lipocalidus DSM 12680] gi|297146031|gb|ADI02788.1| DnaB domain protein helicase domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 800 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 101/502 (20%), Positives = 163/502 (32%), Gaps = 73/502 (14%) Query: 31 KTNAVKGDYWACCP--FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 Y A CP H++K PSF+ + + +CF+C K L G + Sbjct: 26 GFKRSGSGYIARCPCETHEDKHPSFYMPAGRPYGFCFACGFKQSWWDVL-ESRGLRGWQV 84 Query: 89 VQRLAAIAGV---------PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139 V+ LA +AGV + +++ + + D A Sbjct: 85 VEELAKMAGVAPPPRSHSGEVEGEAGEVKDDGREREDWWETRRRAV-------WEPEGAD 137 Query: 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSY 199 + YL RG I+ +G P S + L+ G E Sbjct: 138 VLDYLRSRGYSDDLIQRMDVGARPVSEAGVPAGLKLPGGPEY------------------ 179 Query: 200 DRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQ 259 RL+ P RS G+++A GR L GE +Y+ P G+ L Sbjct: 180 -----RLLVPFRSRGGRLVAVAGRRLDGGEP-RYMYPPGM-----GRALLGQHVLRRDA- 227 Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319 ++VEG MD + L AGVQ VV+ G + Q+ +L + R+VL Sbjct: 228 -------------VPVVVEGLMDAIVLEAAGVQGVVALGGAQASGGQIEVLRQ-YQRVVL 273 Query: 320 CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVES 378 D DD G + LV + G + G +DPD R G + + I + Sbjct: 274 ALDADDAGRAGTER---LVRALVRSGVKTYVAEWVGGAKDPDELFRTAGASPIREAIENA 330 Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNC-INHIKDQKLRYYYSQAIRDRLQQLFQ 437 L +R + LE L C + + + + + + Sbjct: 331 TAGHKWLIRRLAPGPGATDQERDESLEKALDFCEVLARRSPAAAEDAVREMAAVYRLTVE 390 Query: 438 KYITEHSGYGRYW---KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLIN 493 E R ++ R +D +QR + ++ + E +LL + Sbjct: 391 ALGEEVQRLARKRAEEEEKKRWQDALLAAQRAVVEGKIEKAREMVRKVEETRPVLLPIPA 450 Query: 494 HPAILQEQYQELADIRYDNNEL 515 P L E D Sbjct: 451 DPEFLLRAAAE-TKDGLDTPWY 471 >gi|265763837|ref|ZP_06092405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263256445|gb|EEZ27791.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 1017 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 14/109 (12%) Query: 1 MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCN 56 M + D I+ + + ++ + + R N Y CP +K + Sbjct: 1 MYFNDDEIRRIKDAATGHLLDVAQDFHELKRSGVN-----YNCDCPRCKAAKK---LSIS 52 Query: 57 DSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 +K + CF C+ GD +SFL + G +F ++++ LA V L Sbjct: 53 PAKQIFKCFGCNELKGGDSVSFLMSAEGMTFNDALEYLAKKFNVILDQR 101 >gi|289804469|ref|ZP_06535098.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 193 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 89/189 (47%) Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329 +++VEGYMDV++L Q + V+SLGT+ T + +L++ + ++ C+DGD G Sbjct: 5 EPQRLLVVEGYMDVVALAQYDINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRD 64 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389 AA++A++ + ++ G +V F+ L GEDPD+ +R GK AFE + ++ PL L+ Sbjct: 65 AAWRALETAMPYMTDGRQVRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSL 124 Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 ++PD +L IN + R Q + +L + Sbjct: 125 LPQVDLSSPDGSTQLAALALPLINQVPGDTHRIQLRQTLGLKLGIFDDSQLDRLVPKQAE 184 Query: 450 WKKNARHRD 458 + Sbjct: 185 SGVSRPAPQ 193 >gi|218442838|ref|YP_002381158.1| DNA primase [Cyanothece sp. PCC 7424] gi|218175196|gb|ACK73928.1| DNA primase catalytic core domain protein [Cyanothece sp. PCC 7424] Length = 1117 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 85/513 (16%), Positives = 156/513 (30%), Gaps = 58/513 (11%) Query: 32 TNAVKGDYWACCPFHDEKT-PSFHCNDSKGFYYCFSCHVKGDHLSFLSALL--------G 82 + G PF + K+ SF GF+ G ++ +L G Sbjct: 44 KSDATGKLRGIPPFRESKSETSFTVFPDGGFF-DAGDGFGGYAPDYIHSLKIGRWERARG 102 Query: 83 CSFIESVQRL---------AAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHS 131 F+ +V+ L A AG+P P + +K + + ++ + Sbjct: 103 RDFVAAVRELCALAKPDPQADRAGIPFPELSLSQSEIEKAQKSENRRGILACLIKLGQDT 162 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 L + YL + R + ++L+ KG++ +I EAG+ + Sbjct: 163 LWSEFGTAARDYLINERGLTEQQIKDFHLGYYRKRSDVVDYLKHKGYTATEIKEAGVALK 222 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI-LFHKGKNLYN 250 + +I P G+ + GR K + + K LY Sbjct: 223 K---------WEGYIIIPWLDEGGRPLTLYGRYHQKTAPEGLPKTLALPGIGTKRSPLY- 272 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 A+ K +I VEG D L L G +S + + + Q+ L Sbjct: 273 LDRAIAAGHK------------EVIFVEGVFDALLLQALGETRAISGVAASFSNEQIETL 320 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + V GD G +L + +L DPD F+ +G A Sbjct: 321 KRNRIEKVY-HLGDPDGGGIGGTNSNLTRLLKACISVYVPPMLPDSLDPDEFVIRHGIEA 379 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ-----------K 419 ++LI S + + +T + + N + Q + Sbjct: 380 LKELIERSHHGLRWKAAQIVNKCGLDTDAAKERVLREALEVANSVPSQYKLELETFFWGE 439 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R D ++L ++ I + +A D P+ Q K+ Sbjct: 440 IRATMGDMDIDEFRELLERQINNDAQTLS--DSSADIPDSFSPNSEYTQQVYNVLYRDKR 497 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDN 512 E L NH ++ ++ + N Sbjct: 498 WICVEGKLYYWETNHYEHSKDVVEKKRIRDFLN 530 >gi|300088766|ref|YP_003759288.1| DNA primase catalytic core domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528499|gb|ADJ26967.1| DNA primase catalytic core domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1104 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 73/445 (16%), Positives = 139/445 (31%), Gaps = 35/445 (7%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68 L+ + I ++ + + R T CP H ++ S H K +YCF C Sbjct: 14 RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71 Query: 69 VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109 V GD L + + G S ++ LA AG+P + E Sbjct: 72 VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + + +H LK + + L + + + I+ +GYA ++ S+ Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGSV 190 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + ++ + A + F R++FP SRG+V+ GR Sbjct: 191 AQLTEGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249 Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 V + + + + + Y N L +D +I+ EG D L+L Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G+ V RL+ V ++ A+ Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 V L P S + + + + + + R L Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422 Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430 K + ++I R + + + + Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447 >gi|154502926|ref|ZP_02039986.1| hypothetical protein RUMGNA_00747 [Ruminococcus gnavus ATCC 29149] gi|153796465|gb|EDN78885.1| hypothetical protein RUMGNA_00747 [Ruminococcus gnavus ATCC 29149] Length = 1201 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + + L S E+ ++LA G+ P K + +T+ + E Sbjct: 52 CFGCGADGDVIDLTAQLYNLSPKEAAEKLAQDFGLIYDSQAPPRRKYVRQKTEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQRCYR 117 >gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223] gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223] Length = 900 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 138/397 (34%), Gaps = 70/397 (17%) Query: 2 NYPRDFIKDL-----LIHIPISNLIGQYVDWDRRKTNAVKGDYWAC----CPF------- 45 + + + ++ + LI + VD K DY CPF Sbjct: 11 RFNHETLNEIGLEGVKALYDLPELIAKLVD---NKIKPTSSDYCQLEDDVCPFCGHAGCF 67 Query: 46 ---HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL--GCSFIESVQRLAAIA-GVP 99 HD+ + Y+C+SC GD SFL+ + + + LA G+ Sbjct: 68 KIYHDD--------PADQNYHCYSCAEHGDIYSFLTCYDLADNPYDAANKLLAGEIEGIS 119 Query: 100 LPVVDPKIEKKEKIQTDL--------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151 + PK +K + + +L L++ A + + + + K +++R Sbjct: 120 I-NTQPKSKKVKPEKLELTEEQFLRRQDLMDAACEHYLEPMIADKSKPFAALMEKRKFSP 178 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 + +GY S+ L L +GFS ++ +GL+ +G ++ + + R+ IFP Sbjct: 179 EVLFDNDIGY---SQGQLWCALEAQGFSRNEMYASGLVKEGQSNPSDFFP-RDVYIFPHY 234 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 G + F + K + Y N + Sbjct: 235 DEDGNLCRFTFKDPKKEKQ------------------YQMPKQFWLNDIQFYGQHLINDA 276 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLR 329 + +VEG D L+L + V + L++ QL + + +++ FD D G + Sbjct: 277 GAVAIVEGEHDFLALLSHKWEGPVLATNGQLSQEQLAWIKQNLQERKVITFFDSDAAGDK 336 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 + + + +G+D D ++R Sbjct: 337 YR----ETFAGLGLASLIQVSLPEGQGKDIDDYLRHK 369 >gi|168187843|ref|ZP_02622478.1| CHC2 zinc finger domain protein [Clostridium botulinum C str. Eklund] gi|169294309|gb|EDS76442.1| CHC2 zinc finger domain protein [Clostridium botulinum C str. Eklund] Length = 731 Score = 95.0 bits (234), Expect = 3e-17, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 70/233 (30%), Gaps = 35/233 (15%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS-KGFYYCFS 66 +++L +I K N + CCPFH EKTPSF + K + CF Sbjct: 3 LEELKR------VIETETGLKFDKNNKI------CCPFHKEKTPSFSIFEDGKPKFKCFG 50 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAI----AGVPLPVVDPKIEKKEKIQT----DLI 118 C GD + F +IE+V+ L + +P V+ + ++ Sbjct: 51 CGENGDIIDFTRKYKNLDYIEAVRYLNNEGYSINSIDIPYVNIISYIQWQLNHLSDMKDF 110 Query: 119 RLIEVAT--------DFFHHSLKNARDKRLHYY------LDERGIDSHAIEMFKLGYAPD 164 +L+E+ + K K+ YY + + Sbjct: 111 KLMEIYNFKDYKGKFKYCKAKFKINDRKQCRYYSIINDKVQCKRNGEELPYNLYRLVKSK 170 Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 S + + K+ + + + RF + + Sbjct: 171 SNKVYITEGEKDANTLCKMGYLAVSLKNFKYDKFHCRFFKNKNIIVIPDNDRP 223 >gi|160914388|ref|ZP_02076603.1| hypothetical protein EUBDOL_00392 [Eubacterium dolichum DSM 3991] gi|158433546|gb|EDP11835.1| hypothetical protein EUBDOL_00392 [Eubacterium dolichum DSM 3991] Length = 1122 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L S E+ ++LA G+ Sbjct: 31 MACCPFHDDKNPSMKVD---QRFHCFGCGADGDVIDFTAKLFDLSPKEAAEKLAQDFGLI 87 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 P + + +T+ + E + Sbjct: 88 YDSQAPPRRRYVRQKTEAQKFREDRQRCYR 117 >gi|168181372|ref|ZP_02616036.1| CHC2 zinc finger domain protein [Clostridium botulinum Bf] gi|182675377|gb|EDT87338.1| CHC2 zinc finger domain protein [Clostridium botulinum Bf] Length = 863 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 31/158 (19%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDS--KGFYYCFSC 67 L I + +LI K Y CPFH EKTPS N K F+ CF C Sbjct: 3 LQDIDLRDLIEN-----ETGEKFNKQGYI-KCPFHSEKTPSLRVKFNPDTNKDFFKCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK------------KEKIQT 115 GD + F+ ++ E+ + L G+ + + ++++ K + Sbjct: 57 SECGDAIDFIIKYKNLNYTEAREYL----GIEVEKTEKELQEEKVKDYVDWELSKFRQNQ 112 Query: 116 DLIRLIEVATD-----FFHHSLKNARDKRLHYYLDERG 148 L+ + + + +F N K+ Y G Sbjct: 113 KLLGIFKFVNERDEIVYFKAKFANGEGKKQLSYYHLEG 150 >gi|239624275|ref|ZP_04667306.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520661|gb|EEQ60527.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1123 Score = 94.6 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 57/136 (41%), Gaps = 24/136 (17%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ R ACCPFHD+K PS N+ ++Y Sbjct: 3 ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP----------KIEKKEKI 113 CF C GD + F + L S E+ ++LA G+ P + ++ + Sbjct: 53 CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 112 Query: 114 QTDLIRLIEVATDFFH 129 + R++ +D++H Sbjct: 113 RQRCYRVL---SDYYH 125 >gi|116751207|ref|YP_847894.1| DNA primase catalytic core [Syntrophobacter fumaroxidans MPOB] gi|116700271|gb|ABK19459.1| DNA primase catalytic core, N-terminal domain [Syntrophobacter fumaroxidans MPOB] Length = 1103 Score = 94.2 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 72/445 (16%), Positives = 139/445 (31%), Gaps = 35/445 (7%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68 L+ + I ++ + + R T CP H ++ S H K +YCF C Sbjct: 14 RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCG 71 Query: 69 VKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109 V GD L + + G S ++ LA AG+P + E Sbjct: 72 VGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEA 131 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + + +H LK + + L + + + I+ +GYA ++ ++ Sbjct: 132 DRAFELRVKDALTALARLYHARLKESP-EVLDWLKSKYALSEKTIDDLLIGYADNASGAV 190 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + + ++ + A + F R++FP SRG+V+ GR Sbjct: 191 AQLTGGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTP 249 Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 V + + + + + Y N L +D +I+ EG D L+L Sbjct: 250 DVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALM 307 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 Q G+ V RL+ V ++ A+ Sbjct: 308 QLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEHKI 367 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 V L P S + + + + + + R L Sbjct: 368 DTRLVTL-----PLSETQISARQELTERFGLTASVGPKELAKLLAGRPAEEIQAAEALLA 422 Query: 407 HLK-NCINHIKDQKLRYYYSQAIRD 430 K + ++I R + + + + Sbjct: 423 TAKIDVNDYIAAGHTREDFERLLAE 447 >gi|225376796|ref|ZP_03754017.1| hypothetical protein ROSEINA2194_02438 [Roseburia inulinivorans DSM 16841] gi|225211422|gb|EEG93776.1| hypothetical protein ROSEINA2194_02438 [Roseburia inulinivorans DSM 16841] gi|291524352|emb|CBK89939.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629] Length = 1094 Score = 94.2 bits (232), Expect = 6e-17, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 47/126 (37%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y + R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAIKQSVSTREAAEFYGIKVRRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + + + + E Sbjct: 52 CFGCGEDGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKNEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQRCYR 117 >gi|254367580|ref|ZP_04983603.1| DNA primase [Francisella tularensis subsp. holarctica 257] gi|134253393|gb|EBA52487.1| DNA primase [Francisella tularensis subsp. holarctica 257] Length = 203 Score = 94.2 bits (232), Expect = 7e-17, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 108/197 (54%), Gaps = 7/197 (3%) Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDK-RLHYYLDERGIDSHAIEMFKLGYA 162 + +KE++ I + A ++ +L N+ K + YL +RGIDS + F +GY+ Sbjct: 5 SQEDIQKEQLYNKCISFLAAAQKYYRWNLGNSVTKDKAINYLKKRGIDSSLAKFFGIGYS 64 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + ++ E + EE +++ GL I D YDRFR R++FPIR+ +G VIA+GG Sbjct: 65 SEGWNNITELAKSINIPEEILVDTGLAIKNDKG-NLYDRFRGRVMFPIRNIQGNVIAYGG 123 Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 R + VKY+NSPET++F K LY + +K D+ S +++VEGYMD Sbjct: 124 RVTEDSDGVKYINSPETLVFQKNNILYGLYEYRE--RKKQYPDLINQS---LVVVEGYMD 178 Query: 283 VLSLCQAGVQNVVSSLG 299 V+ L Q G V++LG Sbjct: 179 VVGLAQHGFYAAVATLG 195 >gi|266624133|ref|ZP_06117068.1| putative CHC2 zinc finger [Clostridium hathewayi DSM 13479] gi|288864039|gb|EFC96337.1| putative CHC2 zinc finger [Clostridium hathewayi DSM 13479] Length = 1122 Score = 93.8 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + + + +Y ++ R ACCPFHD+K PS N+ ++YCF C Sbjct: 7 ETVKQSVTVREAAERYGIEVKRGG--------MACCPFHDDKNPSMKLNEE--YFYCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120 GD + + L S E+ ++LA G+ P + + + +K + + Sbjct: 57 GATGDVIDLTARLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTEAQKFRENRDHA 116 Query: 121 IEVATDFFH 129 V D+FH Sbjct: 117 FRVLADYFH 125 >gi|291524647|emb|CBK90234.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629] Length = 212 Score = 93.8 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 ++ + ++ +R + + CPFH +KT S + Y+CF C Sbjct: 5 DEVKERVTAREVM------ERAGIVFNRNN-MCRCPFHQDKTASMKVKPTDKKYFCFGCG 57 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 KGD + F++ S E+ ++A G+ K + + ++++E Sbjct: 58 EKGDAIDFVAKYYNRSPREAAMQIADEFGIIYDSSVRSPPKPVRREKSPMQILEETK 114 >gi|167947492|ref|ZP_02534566.1| DNA primase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 152 Score = 93.8 bits (231), Expect = 8e-17, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 10/146 (6%) Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 KYLNSPET LFHKG+ LY F A L+K +++VEGYMDV++L Q G Sbjct: 16 PKYLNSPETPLFHKGRELYGLFEASQALRKI----------DSLLVVEGYMDVVALAQFG 65 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 ++NVV++LGTA T+ L L++++ P ++ CFDGD G AA+KA+ L + G V F Sbjct: 66 IRNVVATLGTATTKEHLELIFRICPEVIFCFDGDRAGRDAAWKALQTSLPVMREGREVRF 125 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIV 376 + L GEDPD+ +R G F Sbjct: 126 LFLPDGEDPDTLVRKEGVEQFSDRAK 151 >gi|291530977|emb|CBK96562.1| DNA primase (bacterial type) [Eubacterium siraeum 70/3] gi|295104168|emb|CBL01712.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] gi|295115230|emb|CBL36077.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1] Length = 1123 Score = 93.8 bits (231), Expect = 9e-17, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ R ACCPFHD+K PS N+ ++Y Sbjct: 3 ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +T+ + E Sbjct: 53 CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQQFRED 112 Query: 124 ATDFFH 129 + Sbjct: 113 RQRCYR 118 >gi|160939440|ref|ZP_02086790.1| hypothetical protein CLOBOL_04333 [Clostridium bolteae ATCC BAA-613] gi|158437650|gb|EDP15412.1| hypothetical protein CLOBOL_04333 [Clostridium bolteae ATCC BAA-613] Length = 1133 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAAFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +T+ + E Sbjct: 52 CFGCGADGDVIDFTARLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RRRCYR 117 >gi|325263021|ref|ZP_08129756.1| putative CHC2 zinc finger [Clostridium sp. D5] gi|324031414|gb|EGB92694.1| putative CHC2 zinc finger [Clostridium sp. D5] Length = 1094 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 18/129 (13%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + + + +Y ++ R ACCPFHD+K PS N+ ++YCF C Sbjct: 7 ETVKQSVTVREAAERYGIEVKRGG--------MACCPFHDDKNPSMKLNEE--YFYCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120 GD + + L S E+ ++LA G+ P + + + +K + + Sbjct: 57 GATGDVIDLTARLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTEAQKFRENRDHA 116 Query: 121 IEVATDFFH 129 V D+FH Sbjct: 117 FRVLADYFH 125 >gi|261884440|ref|ZP_06008479.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 143 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 85/143 (59%), Gaps = 1/143 (0%) Query: 120 LIEVATDFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++A +F+HH L N + YL +RG IE + +G++ + SL L++ G+ Sbjct: 1 MHKIAANFYHHLLLNTVEGENALSYLKKRGFSRELIEKYGIGWSLPNWDSLSLLLKRNGY 60 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 E+ ++GL+I ++ ++DRFR R++FP+ G+VI F GR + + KYLNSPE Sbjct: 61 GMEEAEKSGLVILREDGEGAFDRFRGRVMFPLHDDHGKVIGFSGRIIDAQDEPKYLNSPE 120 Query: 239 TILFHKGKNLYNFFGALNYLQKS 261 T +F+KGK LYN A ++KS Sbjct: 121 TPIFNKGKLLYNLHRARVQIRKS 143 >gi|317498262|ref|ZP_07956561.1| CHC2 zinc finger protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894471|gb|EFV16654.1| CHC2 zinc finger protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 909 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 54/362 (14%), Positives = 107/362 (29%), Gaps = 82/362 (22%) Query: 13 IHIPISNLIGQYVDWDR--RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I NLI ++ R +K + CCPFH++++ SF N G ++CF+ + Sbjct: 3 AEVNIDNLIDYKTEYSRVIKKAHITGDQMTGCCPFHEDRSSSFSVNLKTGMWHCFTEDIG 62 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 G++L F + + G E+ +++ G + +++++ + + + A F Sbjct: 63 GNYLDFYARMNGIDTKEAYKQILEQNG-----YSEEDQQEQERRAKCYSVAQYA---FEK 114 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 L K ER + M D R Sbjct: 115 RLPEDWLKTDCRITTERDRKTKITYMKIPYMNEDGRELTFRKRYAHKD------------ 162 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 F + G+ + G L+ Sbjct: 163 -----------------FRWKYGAGKTMCLYG-------------------------LWK 180 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL 310 +++LVEG D S+ + + T + ++ L Sbjct: 181 LHQIKQS--------------GYVVLVEGESDSQSMWMMSISCLGVPGATMFRQDWVKHL 226 Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL--LSRGEDPDSFIRCYGK 368 ++ + + D G K I + G+ F + +DP +GK Sbjct: 227 --QDLKVYIHQEQDHGGEVMIKKVITTLKDAGFMGDVYKFTCGNIPECKDPSDVYVKFGK 284 Query: 369 TA 370 Sbjct: 285 DD 286 >gi|266621533|ref|ZP_06114468.1| DNA primase [Clostridium hathewayi DSM 13479] gi|288866796|gb|EFC99094.1| DNA primase [Clostridium hathewayi DSM 13479] Length = 121 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 21/128 (16%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + I I +Y ++ R CCPFHD+K PS N K ++Y Sbjct: 2 DNLFETVKQSITIREAAERYGIEVKRGG--------MVCCPFHDDKNPSMKLN--KEYFY 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD-----PKIEKKEKI 113 CF C GD + S L S E+ ++LA G+ P + + ++ + Sbjct: 52 CFGCGATGDVIDLASRLYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTETQQFRED 111 Query: 114 QTDLIRLI 121 + R++ Sbjct: 112 RQRCYRIL 119 >gi|149927882|ref|ZP_01916132.1| DNA primase [Limnobacter sp. MED105] gi|149823321|gb|EDM82554.1| DNA primase [Limnobacter sp. MED105] Length = 356 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 75/368 (20%), Positives = 137/368 (37%), Gaps = 29/368 (7%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MDV++L Q G +N V++LGTA+T + L+K + R+V FDGD G +AA++A+ L Sbjct: 1 MDVVALAQWGFENAVATLGTAVTPDHVLKLFKQTDRLVFAFDGDGAGQKAAWRALQACLP 60 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 H+ R +F+ L DPDSFIR G FE ++ ++ L + L + N + Sbjct: 61 HVSENKRADFIFLPAEHDPDSFIRTEGPDGFEAMVAQAASLSEFLARYLERNYPLQQIEG 120 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 A LK I ++ R +A+ + L + R + K Sbjct: 121 SAAAISFLKPLIVQMQPTVYRSSLLRALANLLGATPMELSRHLGLKSRESGGDYFSPKNK 180 Query: 461 GPSQRLMQSSLVKGKLSKKPSLRE-------------AALLLTLINHPAILQEQYQELAD 507 G + + K + +L +I P +Q L Sbjct: 181 GQQGQFPEKKFGKRFGKFNDEPLQNNWGPRPTAKSPLLSLAARVIRAPQHVQLCNSLLEL 240 Query: 508 IRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + N ++ S L L + + + + ++ R Sbjct: 241 YEREQNPAAEVHSFVHLLEKVRNDPNLLEARLQHAFNDEVHQNWVNSVLKEARGLDDSLD 300 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAILISILHEV 624 ++R G Q L+ + E+E+ A++ +GE + + E+ Sbjct: 301 FE----TELRSGVYQCSELWFK--------AELERLTAEMPTQGEQLRWYHECMQRFQEL 348 Query: 625 H-IQIHQI 631 +++Q+ Sbjct: 349 KQKRVNQL 356 >gi|309776202|ref|ZP_07671193.1| putative CHC2 zinc finger [Erysipelotrichaceae bacterium 3_1_53] gi|308916153|gb|EFP61902.1| putative CHC2 zinc finger [Erysipelotrichaceae bacterium 3_1_53] Length = 1095 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 11/126 (8%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + + Y ++ R ACCPFHD+K PS N+ ++Y Sbjct: 3 ENVFEAVKQSVSTRDAAAFYGIEVKRNG--------MACCPFHDDKNPSMKLNEE--YFY 52 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P + + +T+ + E Sbjct: 53 CFGCGATGDVIDFTAKLFDLSPKEAAEKLAQDFGLIYDSQAPPRRRYVRQKTEAQKFRED 112 Query: 124 ATDFFH 129 + Sbjct: 113 RQRCYR 118 >gi|254229774|ref|ZP_04923182.1| hypothetical protein VEx25_0260 [Vibrio sp. Ex25] gi|151937741|gb|EDN56591.1| hypothetical protein VEx25_0260 [Vibrio sp. Ex25] Length = 257 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 99/284 (34%), Gaps = 32/284 (11%) Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 G ++ F+ L GEDPDS+IR GK AFE+ + ++PL + ++ T+ +T + A Sbjct: 6 TDGRQLKFMFLPDGEDPDSYIRQNGKQAFEQQVSNAMPLSEFMFSLLTQQVDMSTKEGMA 65 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 +L I+ + LR Y + + RL + ++ + + K + + Sbjct: 66 KLSTLAVPLIDKVPGGTLRLYLRELLGRRLGLVDERQLQQLISKQGKEDKRPQPHKEIKR 125 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + ++ LI +P + + L L+ + Sbjct: 126 TPM-------------------REVIALLIQNPQYVSMVPDLTSVRDLPIPGL-SLFVDV 165 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + ++ + LL +L E + + + Q + Sbjct: 166 LDKCQAHPHINTGQLLEHWRNSQNETLLSRLASWDIPLD-EDNQEEIFLDSLDKIIAQCV 224 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +Q E ++ + V AE+ L++++ ++ Sbjct: 225 ---------EKQIENLQAKARSVGLS--AEEKRELLALMLDLKA 257 >gi|317153304|ref|YP_004121352.1| DNA primase catalytic core domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943555|gb|ADU62606.1| DNA primase catalytic core domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 1104 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 71/447 (15%), Positives = 134/447 (29%), Gaps = 37/447 (8%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHL 74 I ++ + + R T CP H ++ S H K +YCF C V GD L Sbjct: 20 DIGDVARELLP--GRITQETGQRLMCDCPNHQSQSRLSLHVMLDKQGWYCFGCGVGGDVL 77 Query: 75 SFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKIEKKEKIQT 115 + + G S ++ LA AG+P + E + Sbjct: 78 QLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQTEADRAFEL 137 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + +H LK + + L + + + I+ +GYA ++ ++ + Sbjct: 138 RVKDALTSLARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASGAVAQLTGG 196 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 + ++ + A + F R++FP SRG+V+ GR V + Sbjct: 197 EDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPWTPDVGWEQ 255 Query: 236 S--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 + + + + Y N L +D +I+ EG D L+L Q G+ Sbjct: 256 GKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLALMQLGLPT 313 Query: 294 VVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 V RL+ V ++ A+ V Sbjct: 314 VSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTAHTLAEHKIDTRLVT 373 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 L P S + + + + + + +E E L Sbjct: 374 L-----PLSETQLSARQELTERFGLTASVGPKELAKLLAG---RPAEEIQAAEALLAIAK 425 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKY 439 + D + + L + Sbjct: 426 IDVNDYIAAGHTLEDFERLLAEASTPI 452 >gi|154498728|ref|ZP_02037106.1| hypothetical protein BACCAP_02719 [Bacteroides capillosus ATCC 29799] gi|150272268|gb|EDM99466.1| hypothetical protein BACCAP_02719 [Bacteroides capillosus ATCC 29799] Length = 980 Score = 93.0 bits (229), Expect = 1e-16, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 9/97 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS N+ ++YCF C GD + F + L S E+ ++LA G+ Sbjct: 31 MACCPFHDDKNPSMKLNEE--YFYCFGCGATGDVIDFTARLYNLSPKEAAEKLAQDFGLA 88 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEV-------ATDFFH 129 P + + +++ + E D+FH Sbjct: 89 YDSQAPPRRRYVRQKSEAQKFKEDRDHTFRVLADYFH 125 >gi|170761722|ref|YP_001787280.1| DNA primase related protein [Clostridium botulinum A3 str. Loch Maree] gi|169408711|gb|ACA57122.1| DNA primase related protein [Clostridium botulinum A3 str. Loch Maree] Length = 863 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 25/127 (19%) Query: 43 CPFHDEKTPSFHC--NDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CPFH EKTPS N K F+ CF C GD + F+ ++ E+ + L G+ Sbjct: 28 CPFHSEKTPSLRVKFNPDTNKDFFKCFGCSECGDAIDFIIKYKNLNYTEAREYL----GI 83 Query: 99 PLPVVDPKIEK------------KEKIQTDLIRLIEVATD-----FFHHSLKNARDKRLH 141 + + ++++ K + L+ + + + +F N K+ Sbjct: 84 EVEKTEKELQEEKVKDYVDWELSKFRQGQKLLGIFKFVNERDEIVYFKAKFANGEGKKQL 143 Query: 142 YYLDERG 148 Y G Sbjct: 144 SYYHLEG 150 >gi|295090446|emb|CBK76553.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 111 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPFH+++TPS + ++CF C GD + F+S + G S +E+ Q++A+ G+ V Sbjct: 32 CPFHNDRTPSMKVD---NRFHCFGCGADGDVIDFVSRIFGISSLEAAQKIASDFGISYDV 88 Query: 103 VDPKIEKKE 111 + K+ Sbjct: 89 KSAVTKPKK 97 >gi|160894307|ref|ZP_02075084.1| hypothetical protein CLOL250_01860 [Clostridium sp. L2-50] gi|225375482|ref|ZP_03752703.1| hypothetical protein ROSEINA2194_01107 [Roseburia inulinivorans DSM 16841] gi|257414265|ref|ZP_04745803.2| DNA primase [Roseburia intestinalis L1-82] gi|156864008|gb|EDO57439.1| hypothetical protein CLOL250_01860 [Clostridium sp. L2-50] gi|225212679|gb|EEG95033.1| hypothetical protein ROSEINA2194_01107 [Roseburia inulinivorans DSM 16841] gi|257200633|gb|EEU98917.1| DNA primase [Roseburia intestinalis L1-82] gi|295091786|emb|CBK77893.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 225 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 8/88 (9%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N CPFH +K PS + ++CF C GD + F+S L S E+ Sbjct: 35 RVGRNG-----MCVCPFHADKNPSMKVDR---RFHCFGCQADGDVIDFVSRLEAVSPKEA 86 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 LA +P +P +K K + + Sbjct: 87 ALMLAQEFSIPYEDREPPGRRKPKPRQE 114 >gi|291548617|emb|CBL24879.1| DNA primase (bacterial type) [Ruminococcus torques L2-14] Length = 989 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L S E+ ++LA G+ Sbjct: 31 MACCPFHDDKNPSMKVD---QRFHCFGCGEDGDVIDFTAKLFDLSSKEAAEKLAQDFGLI 87 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 P + + +T+ + E + Sbjct: 88 YDSQAPPRRRYVRQKTEAQKFREDRQSCYR 117 >gi|317501824|ref|ZP_07960009.1| LOW QUALITY PROTEIN: DNA primase [Lachnospiraceae bacterium 8_1_57FAA] gi|316896714|gb|EFV18800.1| LOW QUALITY PROTEIN: DNA primase [Lachnospiraceae bacterium 8_1_57FAA] Length = 207 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 9/102 (8%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N + CCPFH+++TPS + +YCF C GD + F + L G E+ Sbjct: 23 RVGRNGMV-----CCPFHNDRTPSMKVDS---RFYCFGCGASGDVIDFAALLHGLGKREA 74 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 RLA GV K + A F Sbjct: 75 AVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPRQKSAEQRFQE 115 >gi|78355954|ref|YP_387403.1| Zn-finger, CHC2 type [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218359|gb|ABB37708.1| Zn-finger, CHC2 type [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1098 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 62/344 (18%), Positives = 116/344 (33%), Gaps = 32/344 (9%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH 68 L+ + I ++ R T + CP H ++ S H K +YCF C Sbjct: 12 RLITELDIGDVARD--LLAGRITQESRQRLQCDCPHHQSQSRRSLHVMLDKQGWYCFGCG 69 Query: 69 VKGDH---LSFLSA---LLGCSFI------ESVQRLAAIAGVPL-------PVVDPKIEK 109 V GD + F+ + G S ++ LA AG+P + E Sbjct: 70 VGGDVLQLVEFVQSGTVTAGQSGPMPDSHRQARDFLAGKAGMPPLSRYGLTQERLEQTEN 129 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + + + ++H LK + + L + ++ I I+ +G+A + + Sbjct: 130 DRSFEIRVKDALTELARYYHQRLKENQ-EALTWLKEKYAISDETIDDLLIGFADNESGVI 188 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 + ++ + A + F R+IFP SRG+V+ GR Sbjct: 189 AALRSGEHGFSKRELSATGAFRPTSQDGLNPFFEKRIIFPYW-SRGRVVFMIGRKTPWTP 247 Query: 230 SVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 V + + + + + Y N + +D II+ EG D ++L Sbjct: 248 DVNWEQGKYKKLPVHDEHQRPYVARFINNAV--LFNEDCLLGKPDHIIITEGVTDCIALM 305 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSP---RIVLCFDGDDPGL 328 Q G +S + + L + +C D + Sbjct: 306 QQGFP-ALSPVTVRIRAADWERLVPKMRGLKTVYICQDNEISEA 348 >gi|295101706|emb|CBK99251.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6] Length = 206 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 11/106 (10%) Query: 10 DLLIHIPISNLIGQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + + + +Y + +R + CCPFH+++TPS N+ ++YCF C Sbjct: 6 QVKMAVSVKE-AAEYYGLEVKRGS-------MVCCPFHNDRTPSMKLNED--YFYCFGCG 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 GD + ++ L S ++ ++LA G+ ++ Sbjct: 56 ATGDVIDLVAKLFNLSSYDAAKKLADDFGIDPDKPPAAAALRKTKY 101 >gi|266625761|ref|ZP_06118696.1| DNA primase [Clostridium hathewayi DSM 13479] gi|288862337|gb|EFC94635.1| DNA primase [Clostridium hathewayi DSM 13479] Length = 258 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + + Y ++ R ACCPFHD+K PS + ++ Sbjct: 3 ENVFEAVKQSVSTREAAEFYGIEVKRNG--------MACCPFHDDKNPSMKVD---QRFH 51 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 CF C GD + F + L S E+ ++LA G+ P K + +T+ + E Sbjct: 52 CFGCGADGDVIDFTAKLFDLSSKEAAEKLAQDFGLIYDSQAPPRRKYVRQKTEAQKFRED 111 Query: 124 ATDFFH 129 + Sbjct: 112 RQRCYR 117 >gi|119716477|ref|YP_923442.1| DNA primase catalytic core [Nocardioides sp. JS614] gi|119537138|gb|ABL81755.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp. JS614] Length = 1976 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 155/398 (38%), Gaps = 39/398 (9%) Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + ++ + ++A FF ++ + GID E F+ G AP +L +HL Sbjct: 1519 RERMLEINDMAQAFFEARFTDSWGRDYL--TGRFGIDLAGDERFRPGQAPAGWTNLVDHL 1576 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-----KG 228 R +G S+ +++ G+ I+ ++ DRFR+R++FP+ +G+V+ F GR Sbjct: 1577 RGRGVSDAEMVATGVAIEA-STGRLIDRFRDRVMFPVIH-QGEVLGFVGRRRPDLTDADK 1634 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--L 286 KYLN+ +T LFHKG L+ D + ++VEG +D ++ L Sbjct: 1635 GGPKYLNTADTPLFHKGAQLFG------------VVDELLAEGAVPVIVEGPIDAVAVTL 1682 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 AG+ V+ LGT+LT+ Q L + ++ D D G AA + ++ H G Sbjct: 1683 ASAGLYLGVAPLGTSLTDEQAAQLAAVGRDPIVATDADLAGQVAAERDFWMLTPH---GL 1739 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV----DMLWKRETENRSFNTPDERA 402 F G DP + G A + P D L +N + A Sbjct: 1740 DPGFARFPDGLDPADLLAQRGPAALTAALASGQPAFRSLGDQLLTERLDNLAPEQAQMAA 1799 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 I + +R RLQ + + + W + R Sbjct: 1800 MRVISARPSRAWEPGA-------NQVRARLQLSQLQARRDLRDAIKTWDADPRKAALAEL 1852 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + + K P+ R A L L P +L++ Sbjct: 1853 HKSSEVRARLSAAAEKTPAERWAPLAREL--DPRLLEQ 1888 >gi|293115670|ref|ZP_06604562.1| DNA primase [Butyrivibrio crossotus DSM 2876] gi|292808731|gb|EFF67936.1| DNA primase [Butyrivibrio crossotus DSM 2876] Length = 214 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N CPFHD+K PS + ++CF C GD + F+S L S E+ Sbjct: 23 RVGRNG-----MCVCPFHDDKNPSMKVDR---RFHCFGCQADGDVIDFVSRLENVSPKEA 74 Query: 89 VQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 LA +P +P + + Q + + + L + + + D Sbjct: 75 ALMLAQDFSIPYEDKEPPGRSRRPHPRQETPEQQFKRMERYCFRVLSDYHNLLRRWKRDY 134 Query: 147 RGIDSHAIEM 156 Sbjct: 135 APKTPDEEWH 144 >gi|160894277|ref|ZP_02075054.1| hypothetical protein CLOL250_01830 [Clostridium sp. L2-50] gi|156863978|gb|EDO57409.1| hypothetical protein CLOL250_01830 [Clostridium sp. L2-50] Length = 211 Score = 92.3 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%) Query: 11 LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + ++ + QY + +R ACCPFH +KTPS + YYCF C Sbjct: 7 VKENVTARQVAMQYGIKINRSG--------LACCPFHKDKTPSMKIDK---RYYCFGCGD 55 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 GD + F++ G + E+ ++A+ G+ + KK + ++++ Sbjct: 56 TGDAIDFVAKYFGLAPKEAAMKIASDFGLNYDATNRAPPKKMAPKKTPEQILDEEQKQCF 115 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 L + + + A + Sbjct: 116 CVLSDYYHLLRKWKTEYALKSMDEEWHPCFVEALQN 151 >gi|153815824|ref|ZP_01968492.1| hypothetical protein RUMTOR_02069 [Ruminococcus torques ATCC 27756] gi|145846849|gb|EDK23767.1| hypothetical protein RUMTOR_02069 [Ruminococcus torques ATCC 27756] Length = 161 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 21/160 (13%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ + +++G+Y + + CCPFH EKT S YYCF C Sbjct: 4 EEIKKTYSMRDILGRY------GMQPNRAGFI-CCPFHKEKTASMKIYQDS--YYCFGCG 54 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIA---------GVPLPVVDPKIEKKEKIQTDLIR 119 GD F+S + +F E+ L + + E +++ + +L Sbjct: 55 AHGDIFDFVSQMEDITFREAFFNLGGTYEQKKETFGERMSRYHARKEWEMQQRQKENLEE 114 Query: 120 ---LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156 + D + L + + Sbjct: 115 RRKVNSELIDIYRDCLILTVPLSDLWTESYNKLQYQLYLH 154 >gi|257439527|ref|ZP_05615282.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257198054|gb|EEU96338.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 214 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N CPFH++K PS + ++CF C GD + F+S L S E+ Sbjct: 23 RVGRNG-----MCACPFHNDKNPSMKVDR---RFHCFGCQADGDVIDFVSRLENISPREA 74 Query: 89 VQRLAAIAGVPLPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 LA +P +P + + + Q + L + + + LD Sbjct: 75 ALMLAQDFSIPYEDKEPPSRSRRPQPRQESPEQQFRRMERHCFRVLSDYHNLLHRWKLDY 134 Query: 147 RGIDSHAIEM 156 Sbjct: 135 APKTPDEEWH 144 >gi|158079345|ref|YP_001504158.1| putative primase [Enterococcus phage phiEF24C] gi|157890189|dbj|BAF81317.1| putative primase [Enterococcus phage phiEF24C] Length = 352 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 67/379 (17%), Positives = 120/379 (31%), Gaps = 83/379 (21%) Query: 33 NAVKGDYWACCPFHD-EKTPSFHC-----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFI 86 DY CPF D + F+ + ++CF C G+ +SF+ SF Sbjct: 14 KYAVRDYRYNCPFCDYDTKYKFYVRVEEGHPKNNLWHCFKCGSSGNPVSFVMKYYNVSFK 73 Query: 87 ESVQRLAAIAGVP------LPVVD-----------------PKIEKKEKIQTDLIRLIEV 123 E+++ L G +P D PK E K+ + + + Sbjct: 74 EALEIL-EEYGYRFNNKNYVPKSDKLTDEEYLLLLLGSLGKPKEETKQAKKELVAPPLPD 132 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 +L+ Y ++RG + I M +GY DS Sbjct: 133 GFKLLSQNLREPEAYPFLLYCNKRGFTLNDIYMHNIGYVKDSW----------------- 175 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH 243 R ++ L+F G+ + R + +K LN+P H Sbjct: 176 --------VPLENGKSVRLKDHLVFLTHGKDGKYQYWNTRAI-GESFIKSLNAPSKEGEH 226 Query: 244 KGK-NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 K ++N A + + I++ EG D L++ ++ V + G + Sbjct: 227 SKKDTIFNINRA--------------SQTPQIVITEGVPDALTVGES----GVGTFGKQV 268 Query: 303 TEYQLRLLW---KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T+ Q+ L+ +I + D D + L N V+ +D Sbjct: 269 TDEQVELILDSVNEEQKIFIYLDKDAK-----KEIKKLAEKLYKRHNETYVVISPTTQDA 323 Query: 360 DSFIRCYGKTAFEKLIVES 378 +S R V++ Sbjct: 324 NSLGREEAWNIINNYSVKA 342 >gi|218779953|ref|YP_002431271.1| DNA primase catalytic core domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761337|gb|ACL03803.1| DNA primase catalytic core domain protein [Desulfatibacillum alkenivorans AK-01] Length = 921 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 73/401 (18%), Positives = 131/401 (32%), Gaps = 62/401 (15%) Query: 4 PRDFIKDLLIHIPISNLIGQYVD-----WDRR---KTNAVKGDYWACCPFHDEKTPSFHC 55 L IP+ + Y+ + N + H++ Sbjct: 2 DNSLFDRLKQAIPLED----YLTAENQCLIKPVGDGINRANPCFACG---HND---CLTL 51 Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVP-----LPVVDPKIEK 109 ++CFSC + GD ++ + G S E+ +RLA + P K E Sbjct: 52 YSD-NTFHCFSCTITGDVINAEQIIHGHESPGEAARRLAEKYNIDAKTSKPPSRPSKAEN 110 Query: 110 KEK------IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 K+ Q + +A +F+H L N + Y +R + ++ ++GYA Sbjct: 111 KKDSTIPKLEQARAFEIRRMAAEFYHAQLLNDPKAQE-YLTSKRKHSAEILKGCQVGYAS 169 Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223 + L +H + G++ E + GL+ DN + G+V R Sbjct: 170 GN---LIKHAKSLGYTVEDLKGVGLVKPKDNGVRLVIPQGAYVFP--HFGNGEV-----R 219 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 + + LN Y S +++VEG D Sbjct: 220 FFTFKDPTGNLN-------------YQLNKEFKDPGYVCLGQDCLTSKGPVVIVEGENDY 266 Query: 284 LSLCQA-GVQNVVSSLGTALTEYQLRLLWKLSP--RIVLCFDGDDPGLRAAYKAIDLVLC 340 LS+ V+++ G A T + + + L FD D G + + Sbjct: 267 LSVVDKGKWPRVIATNGNANTTAPSKHIKENCQGWTFYLAFDNDQAGDKYTRRFA--AAI 324 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIR--CYGKTAFEKLIVESL 379 H G + S +D D ++R + AF+ LI + Sbjct: 325 HAANGQAFKLEIPSPHKDIDEYLRSSENPEDAFQCLIDSAK 365 >gi|49234752|ref|YP_025461.1| putative DNA primase [Beet leafhopper transmitted virescence phytoplasma] gi|40288356|gb|AAR84211.1| putative DNA primase [Beet leafhopper transmitted virescence phytoplasma] Length = 382 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 130/376 (34%), Gaps = 54/376 (14%) Query: 35 VKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93 Y C FH+ + S N K YC++C D + SF E+V+ L Sbjct: 25 AGISYRFPCLFHESTSGLSASVN-KKNRVYCWACEKPFDTIDIYQKKCSVSFYEAVKELG 83 Query: 94 AIAGV-------------PLPVVDPK---------------IEKKEKIQTDLIRLIEVAT 125 + + I++K+ I L+ T Sbjct: 84 LFYNNDEYLEMKNQPINPQIETRTKQLLKNSQPIITDNQEIIKQKQNILQKYSPLLNQIT 143 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 +F+H L N + + + I+ FKLGY+ + L + + ++ Sbjct: 144 NFYHQQLLNNQGMLNYLLEIRKLN-LDIIKKFKLGYSDANNNKLLKVFSKDKDLLLELDL 202 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR----TLSKGESVKYLNSPETIL 241 + YD N L+ P+ + + T + N T + Sbjct: 203 IRFNNKYNFH---YDTLENCLVIPVLHENQTMHFYKNNFGVVTTFNPKYKALKNFSNTPI 259 Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301 F+ + F A ++K+ + +I+ EG+ DV++ Q ++N + + Sbjct: 260 FYYP---FGFSFAKEEIKKARK----------VIIHEGFYDVINTHQHNIKNTIGLITIK 306 Query: 302 LT--EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 + L K + ++++ D DD GL + + + + L N + + L +D Sbjct: 307 SYLSNPIITFLTKNNIKVIIGLDNDDAGLNNSQR-LKMQLDSENIENEIKTIQLKDCKDA 365 Query: 360 DSFIRCYGKTAFEKLI 375 D ++ Y ++++ Sbjct: 366 DDILKKYNVELYKQIY 381 >gi|119952351|ref|YP_949952.1| DNA primase [Arthrobacter aurescens TC1] gi|119951481|gb|ABM10391.1| DNA primase [Arthrobacter aurescens TC1] Length = 363 Score = 91.9 bits (226), Expect = 3e-16, Method: Composition-based stats. Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 29/333 (8%) Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI-DSHAIEMFKLGYAPDSRYS 168 + + LI E A +F+ L YL +RG + +G+AP + Sbjct: 3 RAPSRDQLIAANEDAAEFYRRHLLGPDGAGPRRYLTQRGFATLLNDTPWTVGHAPATWTP 62 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 L +HL + G+S+E + AGL DRFR+R+ F IR + Q++ F RT G Sbjct: 63 LHDHLSELGYSDEAQLGAGLTSISRRGH-MIDRFRDRITFGIRDQQDQLVGFTARTGPVG 121 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 KYLN+P T LF K L+ A R+ + +LVEG +D +++ Sbjct: 122 RDPKYLNTPRTDLFDKSAELFGLGEA------------TRSPAQTCVLVEGPLDAIAVTI 169 Query: 289 AGVQN-VVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 A + GTALT+ RLL +++L FDGD G R A ++ Sbjct: 170 AEPATAAQALCGTALTDKHARLLRSASHEQLILAFDGDPAGARGLDNAASVMCDDRA--- 226 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP--DERAEL 404 + +DP F+ G A + + P ++L + + Sbjct: 227 ---VAVRRPQQDPAGFLANEGPLALSAALSSARPAAEVLLEAHLAKWPDRLDSAEAAIGC 283 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 I I+ + A+ RL + Sbjct: 284 LREAATMIARIRPADVA-----ALATRLSHETR 311 >gi|60681803|ref|YP_211947.1| putative DNA primase [Bacteroides fragilis NCTC 9343] gi|60493237|emb|CAH08019.1| putative DNA primase [Bacteroides fragilis NCTC 9343] Length = 1017 Score = 91.5 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 14/104 (13%) Query: 1 MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCN 56 M + D I+ + + ++ + + R N Y CP +K + Sbjct: 1 MYFNDDEIRRIKDAATGHLLDVAQDFHELKRSGVN-----YNCDCPRCKAAKK---LSIS 52 Query: 57 DSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 +K + CF C+ GD +SFL + G +F +++ LA V Sbjct: 53 PAKQIFKCFGCNELKGGDSVSFLMSAEGMTFNDALDYLAKKFNV 96 >gi|315650019|ref|ZP_07903099.1| DNA primase [Eubacterium saburreum DSM 3986] gi|315487789|gb|EFU78092.1| DNA primase [Eubacterium saburreum DSM 3986] Length = 182 Score = 91.5 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 12/108 (11%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ +S ++ QY + + CCPFH EKTPS +YCF C Sbjct: 4 EEIKEKYSMSEILEQY------GFKPNRAGFI-CCPFHKEKTPSMKIYAKS--FYCFGCG 54 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 GD F++ + C+F E+ + L GV K + + + Sbjct: 55 RHGDIFDFVAGMENCNFSEAYRSLG---GVEDNSRKAKFAEYRRRKAR 99 >gi|254884976|ref|ZP_05257686.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837769|gb|EET18078.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 1019 Score = 91.5 bits (225), Expect = 4e-16, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%) Query: 1 MNYPRDFIKDLLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS---FHC 55 M + + I + + +++ + + + DY CP K S F Sbjct: 1 MYFNENEISRIKSASDGRLLDVVQDFRELRKSGK-----DYVCECP----KCRSAKKFTV 51 Query: 56 NDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI 113 + K + CFSC + G +S+L + G + ++++ LA V L P D K + Sbjct: 52 SPGKNLFKCFSCQIGGEGAVSYLMNIEGYGYTDALEYLAKKFCVLLDPHPDKPAGKPVQK 111 Query: 114 QTD 116 Sbjct: 112 MKK 114 >gi|86741052|ref|YP_481452.1| DNA primase catalytic core-like protein [Frankia sp. CcI3] gi|86567914|gb|ABD11723.1| DNA primase catalytic core-like [Frankia sp. CcI3] Length = 641 Score = 91.5 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 136/354 (38%), Gaps = 31/354 (8%) Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 P + L I A ++ L A + D + + +GYAP Sbjct: 225 PPPRQASAEHARLYDAIRAAARWYTLHLTGAADGPAGRMLAERGLADVASDPRWMVGYAP 284 Query: 164 DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGR 223 L + L GF+E+++++AGL T DRFR+RL+F +R G+++ F GR Sbjct: 285 PGWTGLVDQLHALGFTEQELLDAGLAARTRRG-TLVDRFRHRLLFGLRDPDGRIVGFIGR 343 Query: 224 TLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV 283 L G++ KYLNSP T+LF K + L+ + L R ++VEG DV Sbjct: 344 AL-DGQTPKYLNSPTTVLFDKSRLLFGLAEQRDLLAAGARP----------VVVEGPTDV 392 Query: 284 LSLCQAGVQN-----VVSSLGTALTEYQLRLL---WKLSPRIVLCFDGDDPGLRAAYKAI 335 L++ A Q V++ GTA T R+L I + D D GLRAA +A Sbjct: 393 LAVAVAARQTGRALAAVAACGTAFTADHARVLGSATPGRDGITVAHDPDPAGLRAAARAY 452 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES---LPLVDMLWKR---E 389 ++ R++ L G DP + G A + + PL + + Sbjct: 453 QVLRDL---DTRLHHADLPAGADPAGLLATAGPDALRAALSDPARLRPLAAAVIDQRLAW 509 Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 ++ + + + I +D L R+ I Sbjct: 510 LDDDHRRFLEHQFTALRAVAPIIAT-EDPALVGGLVSYTAGRIGLDASDVIGAV 562 >gi|163816297|ref|ZP_02207664.1| hypothetical protein COPEUT_02485 [Coprococcus eutactus ATCC 27759] gi|238925940|ref|YP_002939458.1| DNA primase [Eubacterium rectale ATCC 33656] gi|158448492|gb|EDP25487.1| hypothetical protein COPEUT_02485 [Coprococcus eutactus ATCC 27759] gi|238877617|gb|ACR77324.1| DNA primase [Eubacterium rectale ATCC 33656] gi|295093150|emb|CBK82241.1| DNA primase (bacterial type) [Coprococcus sp. ART55/1] Length = 211 Score = 91.1 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 61/154 (39%), Gaps = 18/154 (11%) Query: 11 LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + ++ + QY + +R ACCPFH +KTPS + YYCF C Sbjct: 7 VKENVTARQVAMQYGIKINRSG--------LACCPFHKDKTPSMKIDK---RYYCFGCGD 55 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 GD + F++ G + E+ ++A+ G+ + KK + ++++ Sbjct: 56 TGDAIDFVAKYFGLAPKEAAMKIASDFGLNYDATNRAPPKKMAPKKTPEQILDE------ 109 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 + +Y+L + +A + + P Sbjct: 110 EQKQCFCVLSDYYHLLRKWKTEYAPKSMDEEWHP 143 >gi|295103872|emb|CBL01416.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] Length = 218 Score = 91.1 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 4/89 (4%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH+++TPS + +YCF C GD + F + L G E+ RLA GV Sbjct: 3 CCPFHNDRTPSMKVDS---RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-Y 58 Query: 102 VVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 K + A F Sbjct: 59 EKSGNAPPDRKRHNRSQPRQKSAEQRFQE 87 >gi|283796264|ref|ZP_06345417.1| putative DNA primase [Clostridium sp. M62/1] gi|291076200|gb|EFE13564.1| putative DNA primase [Clostridium sp. M62/1] Length = 211 Score = 91.1 bits (224), Expect = 5e-16, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 56/164 (34%), Gaps = 10/164 (6%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N CPFH +K PS + ++CF C GD + F+S L S E+ Sbjct: 23 RVGRNG-----MCVCPFHADKNPSMKVDR---RFHCFGCQADGDVIDFVSRLEAVSPKEA 74 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 LA +P D + + K + + + + + L + + Sbjct: 75 ALMLAQEF--SIPYEDKEPPRHRKPRQETPEQRFRRMERYCFRVLCDYRNLLRRWKRDYA 132 Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG 192 + + L + ++L S + A L+ID Sbjct: 133 PKTPDEDFHPLFVEALQKQDYVDYLLDVLLSPDMEERAALIIDC 176 >gi|160945890|ref|ZP_02093116.1| hypothetical protein FAEPRAM212_03423 [Faecalibacterium prausnitzii M21/2] gi|158443621|gb|EDP20626.1| hypothetical protein FAEPRAM212_03423 [Faecalibacterium prausnitzii M21/2] Length = 930 Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + + + Y ++ R ACCPFHD+K PS N+ ++YCF C Sbjct: 7 ETVKQAVTVKEAAQLYGIEVKRGG--------MACCPFHDDKNPSMKLNED--YFYCFGC 56 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGV-----PLPVVD--PKIEKKEKIQTDLIRL 120 GD + + S E+ ++LA G+ P + + +++K + D Sbjct: 57 GASGDVIDLTARFYNLSPKEAAEKLAQDFGLIYDSQAPPRRNYVRQKTQRQKFKEDRDHT 116 Query: 121 IEVATDFFH 129 V D+FH Sbjct: 117 FRVLADYFH 125 >gi|78356964|ref|YP_388413.1| DNA primase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219369|gb|ABB38718.1| DNA primase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1103 Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 72/447 (16%), Positives = 138/447 (30%), Gaps = 39/447 (8%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS---FHCNDSKGFYYCFS 66 L+ + I ++ + + R T CP H + S H K +YCF Sbjct: 14 RLVTEMDIGDVARELLP--GRITQETGQRLMCDCPNHQ--SQSRLALHVMLDKQGWYCFG 69 Query: 67 CHVKGDHLSFLSALL------GCSFI------ESVQRLAAIAGVPL-------PVVDPKI 107 C V GD L + + G S ++ LA AG+P + Sbjct: 70 CGVGGDVLQLVEFIQTGSVTAGQSGPMPDSHRQARDYLAKKAGLPPLSRYGLSQERLAQT 129 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 E + + + +H LK + + L + + + I+ +GYA ++ Sbjct: 130 EADRAFELRVKDALTSLARLYHARLKESP-EVLDWLKSKYALSEETIDDLLIGYADNASG 188 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 ++ + + ++ + A + F R++FP SRG+V+ GR Sbjct: 189 AVAQLTGGEDGFSKRELAATGAFRPTSQDGLTPFFERRIVFPYW-SRGRVVFMIGRKTPW 247 Query: 228 GESVKYLNS--PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 V + + + + + Y N L +D +I+ EG D L+ Sbjct: 248 TPDVGWEQGKYKKLPVHDEHQRPYVADFINNAL--LFNEDCLLARPGKVIITEGVTDCLA 305 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 L Q G+ V RL+ V ++ A+ Sbjct: 306 LMQLGLPTVSPVTVRIRAADWERLIPKLRGVETVYICQDNELSQAGLKGALQTARTLAEH 365 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 V L P S + + + + + + R L Sbjct: 366 KIDTRLVTL-----PLSETQISARQELTERFSLTASVGPKELAKLLAGRPAEEIQAAEAL 420 Query: 405 EIHLK-NCINHIKDQKLRYYYSQAIRD 430 K + ++I R + + + + Sbjct: 421 LATAKIDVNDYIAAGHTREDFERLLAE 447 >gi|39939035|ref|NP_950801.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722144|dbj|BAD04634.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 441 Score = 90.7 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 91/430 (21%), Positives = 165/430 (38%), Gaps = 76/430 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57 MNY +D I + + P+ V + Y CP H P+ H Sbjct: 1 MNY-QDKINHIKTNFPMI------VLLKKLNIIPPNFNTKYRFPCPIHQGNNPTCCHLTS 53 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAA---------------------- 94 +C+ C D + + G +F +++++ Sbjct: 54 DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTSTPNISY 112 Query: 95 ---IAGVPLPVVDPKIEKKE------KIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141 ++ I++KE ++ ++ L D++H+ L R+ H Sbjct: 113 KPFKYQFQPNKINNPIDEKEINTTKTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGLE 172 Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 Y +R + I+ FKLGYAP S + L + ++K + ++++E G + + N Sbjct: 173 YLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYFKKKNINIDQLLEYGFIKEKTNQQN 232 Query: 198 ---SYDRFRNRLIFPIRSSRGQVIAFGGR-----TLSKGESVKYLNSPETILFHKGKNLY 249 +D F +I PI + + F T + + N +T FH Y Sbjct: 233 KKYYHDTFHGSIIIPIENGYNKTFHFYQNHFRDTTYFQPKYQSLNNFSQTPTFHFS---Y 289 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307 FF AL Y++K + II+ EG+ DV+S Q G++NVV + A L++ Q+ Sbjct: 290 RFFEALPYIKK----------TKTIIIHEGFFDVISCWQHGIKNVVGLICVAQLLSQTQM 339 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365 +L K +++ D D+ G + + + IP + +D D +R Sbjct: 340 DILKKEKIKVITALDNDETGRKRNAALGEQLKEQQIPYEIRRILSPYDKTCKDVDDLLRQ 399 Query: 366 YGKTAFEKLI 375 YGK A++K Sbjct: 400 YGKEAYQKCF 409 >gi|85057499|ref|YP_456415.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789604|gb|ABC65336.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] Length = 441 Score = 90.7 bits (223), Expect = 7e-16, Method: Composition-based stats. Identities = 88/426 (20%), Positives = 156/426 (36%), Gaps = 75/426 (17%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD--YWACCPFHDEKTPSF-HCNDSKGF 61 ++ IK + + P+ V + K + Y CP H + P+ H ND Sbjct: 4 QNKIKHIKTNFPMI------VLLKKLKILPTNFNIKYRFPCPIHQGQNPTCCHINDHNQI 57 Query: 62 YYCFSCHVKGDHLSFLSALLGC-SFIESVQRLA-----AIAG--------VPLPVVDPKI 107 +C+ C D + + SF E++QR+ + +P Sbjct: 58 -HCWKCGRDYDIIDVYREIRQIKSFSEAIQRIGHFMKNQEFNNLIQQEKEITTTSSNPFQ 116 Query: 108 EKKEK---------------IQTDLIR---LIEVATDFFHHSLKNARDKRLHY----YLD 145 + + L L D++H+ L + Sbjct: 117 HQYQTKQSQNPIDEHQIQLIKNQLLKETSPLFNQIRDYYHYLLITNHNNESSMGLEYLTQ 176 Query: 146 ERGIDSHAIEMFKLGYAP----DSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT---S 198 +R + I+ FKLGYAP + L L++K K++E G + + N Sbjct: 177 KRKLTLETIKEFKLGYAPLLNKPLSFRLSNFLKKKNIDTTKLVEYGFIKEKTNQKGTKYY 236 Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLYNFFG 253 +D F +I PI + + F + + N + FH Y FF Sbjct: 237 HDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQSKYQSINNFSQIPTFHFS---YRFFE 293 Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLRLLW 311 AL Y++K + II+ EG+ DV+S Q G++NVV + A L++ Q+ +L Sbjct: 294 ALPYIKK----------TKTIIIHEGFFDVISCWQHGIKNVVGLICVAQLLSQTQMDILK 343 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGKT 369 K + ++++ D D+ G + + + IP + +D D +R YGK Sbjct: 344 KEAIKVIIALDNDETGRKRNEALGEQLKEQQIPYEIRRILPPYDKTCKDVDDLLRQYGKE 403 Query: 370 AFEKLI 375 ++K Sbjct: 404 VYQKCF 409 >gi|197294439|ref|YP_001798980.1| DNA primase [Candidatus Phytoplasma australiense] gi|171853766|emb|CAM11695.1| DNA primase [Candidatus Phytoplasma australiense] Length = 598 Score = 90.3 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 81/437 (18%), Positives = 159/437 (36%), Gaps = 65/437 (14%) Query: 36 KGDYWACCPFHDEKTPSF-HCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL-- 92 Y CP H K P+ + +CF C + D + G F ES++R+ Sbjct: 31 NRKYRFPCPIHQGKNPTCCRITEDNAI-HCFKCTKRYDIVDVYQRTRGLDFNESIRRILS 89 Query: 93 -------------------------AAIAGVPLPVVDPKIEKKEKIQTDLIRL---IEVA 124 + + K + L + Sbjct: 90 FMKSQEFKTLLQEEQQITKLTKSPFKQQYHSKSAYPTDETQLKTAKRKLLKEVSPLFNQI 149 Query: 125 TDFFHHSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQK 176 D++H+ L ++ H Y ++R + I+ F LG+AP S + + ++K Sbjct: 150 RDYYHYLLTANQNNESHQGIKYLTEKRKLTPATIKEFSLGFAPLSDKPLSFRFFNYCQKK 209 Query: 177 GFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRGQVIAFGGRT-----LSKG 228 + K+IE G + + + +D F +I PI + R F + K Sbjct: 210 NINIHKLIEYGFIKEKTSKKGSKYYHDAFNGSVIIPIENGRQHTFHFYQNNFQNTGIFKP 269 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + N +T F+ Y FF AL Y++ + +I+ EG+ DV+S Q Sbjct: 270 KYQSLTNFSQTPTFYFS---YRFFEALPYIK----------QAKTVIIHEGFFDVISCWQ 316 Query: 289 AGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 G++NVV + A L++ Q+ + K ++++ D D+ GL + + + + Sbjct: 317 RGIKNVVGLICIAQQLSQAQIDIFKKEQIKVIIALDNDETGLNRNKELAAQLKSNQVDCE 376 Query: 347 RVNFVLLSR--GEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 + +D D +R +G A++K +++ + + N + Sbjct: 377 IRRILPPYSKTCKDVDDLLRNHGYQAYKKCFLDNSDPYAGYEGYPPYDFAVNLFGKNTVE 436 Query: 405 EIHLKNCINHIKDQKLR 421 ++ K +N + L+ Sbjct: 437 IVNSKRSLNSKESPTLQ 453 >gi|295090195|emb|CBK76302.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 1043 Score = 90.3 bits (222), Expect = 1e-15, Method: Composition-based stats. Identities = 74/602 (12%), Positives = 171/602 (28%), Gaps = 57/602 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD++ PS + ++CF C GD + F + L S E+ ++LA G Sbjct: 31 MACCPFHDDRHPSMKVDA---RFHCFGCGADGDVIDFTARLYDLSPKEAAEKLAQDFG-- 85 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 L + ++ ++ ++ + + L + H + ++ Sbjct: 86 LSYDNKAPPRRSYVRQKS-----------EAQVRKEKREHGWRVLTDY---YHLLRKWEA 131 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 Y+P + ++ + L D+S D++ I + G+V Sbjct: 132 DYSPKMPDEDPHPRFLEAIQKKDYMGYLLDTFLDSSTEEQDQWIAEHTAEISAIEGRVNI 191 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 + ++ + E + K L+ + YL R +++ +I ++ Sbjct: 192 MADKPTNRERLQQITAGIEQGI----KELFESEKYMRYLSVMSRFHRYSVNNTMLIYMQK 247 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339 L +N + + + D + Sbjct: 248 PDATLVAGYNKWKNQFERHVKRGEHGITIIAPTPFKKKIEEQKLDPDTKAP-ILDAEGKA 306 Query: 340 CHLIPGNRVNFVLLSRGEDPDSF-------------IRCYGKTAFEKLIVESLPLVDMLW 386 + + D AF + + S P+ + Sbjct: 307 VMEEREVEIPMFRPVKVFDVSQTDGKPLPELASTLSGNVQNYEAFMEALRRSAPVPLSVE 366 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 + +PD++ + + + I Y Sbjct: 367 PMAANMDGYFSPDQQRIAIRAGMSEVQTVSAAV------HEIA---HSKLHNYAKAQEEA 417 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 R K + + + +S E + I + + +E + A Sbjct: 418 ARAGDKEPPKKKDRNTEEVEAESISYAVCQYYGIQTGENSF--GYIANWSQGKELPELRA 475 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + N +L + + + ++ L +++ D +S Sbjct: 476 SLETINKTAGELINDIDRHYKVICKERGIDL-----TAAPEPQLDPIEQLAADIDQFSFD 530 Query: 567 TEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 + + VD R+ + L R S ++ +++ + K A L+ L Sbjct: 531 YDTYEYRDQVDNREDALRELTATLRSGDASGVRDWLQEFADENEPGEAVTKAAELLDRLD 590 Query: 623 EV 624 ++ Sbjct: 591 QL 592 >gi|261366489|ref|ZP_05979372.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM 15176] gi|282571761|gb|EFB77296.1| putative CHC2 zinc finger protein [Subdoligranulum variabile DSM 15176] Length = 1043 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 74/602 (12%), Positives = 170/602 (28%), Gaps = 57/602 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD++ PS + ++CF C GD + F + L S E+ ++LA G Sbjct: 31 MACCPFHDDRHPSMKVDA---RFHCFGCGADGDVIDFTARLYDLSPKEAAEKLAQDFG-- 85 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 L + ++ ++ ++ + + L + H + ++ Sbjct: 86 LSYDNKAPPRRSYVRQKS-----------EAQVRKEKREHGWRVLTDY---YHLLRKWEA 131 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 Y+P + ++ + L D+S D++ I + G+V Sbjct: 132 DYSPKMPDEDPHPRFLEAIQKKDYMGYLLDTFLDSSTEEQDQWIAEHTAEISAIEGRVNI 191 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 + ++ + E + K L+ + YL R +++ +I ++ Sbjct: 192 MADKPTNRERLQQITAGIEQGI----KELFESEKYMRYLSVMSRFHRYSVNNTMLIYMQK 247 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339 L +N + + + D + Sbjct: 248 PDATLVAGYNKWKNQFERHVKRGEHGITIIAPTPFKKKIEEQKLDPDTKAP-ILDAEGKA 306 Query: 340 CHLIPGNRVNFVLLSRGEDPDSF-------------IRCYGKTAFEKLIVESLPLVDMLW 386 + + D AF + + S P+ + Sbjct: 307 VMEEREVEIPMFRPVKVFDVSQTDGKPLPELASTLSGNVQNYEAFMEALRRSAPVPLSVE 366 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 + +PD + + + + I Y Sbjct: 367 PMAANMDGYFSPDRQRIAIRAGMSEVQTVSAAV------HEIA---HSKLHNYAKAQEEA 417 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 R K + + + +S E + I + + +E + A Sbjct: 418 VRAGDKEPPKKKDRNTEEVEAESISYAVCQYYGIQTGENSF--GYIANWSQGKELPELRA 475 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + N +L + + + ++ L +++ D +S Sbjct: 476 SLETINKTAGELINDIDRHYKVICKERGIDL-----TAAPEPQLDPIEQLAADIDQFSFD 530 Query: 567 TEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 + + VD R+ + L R S ++ +++ + K A L+ L Sbjct: 531 YDTYEYRDQVDNREDALRELTATLRSGDASGVRDWLQEFADENEPGEAVTKAAELLDRLD 590 Query: 623 EV 624 ++ Sbjct: 591 QL 592 >gi|329898804|ref|ZP_08272473.1| DNA primase [gamma proteobacterium IMCC3088] gi|328920739|gb|EGG28204.1| DNA primase [gamma proteobacterium IMCC3088] Length = 284 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 104/296 (35%), Gaps = 15/296 (5%) Query: 338 VLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT 397 +L L G + F+ L GEDPD+ +R G AFE LI ++ P+ L+ E + + Sbjct: 1 MLPLLEDGRQAKFLFLDEGEDPDTLVRKLGTQAFESLIKDARPVEQFLFDMAAEGLNQES 60 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + +A + + + QA+ DR K Sbjct: 61 LEGKASFSKRAVPLVQQLPSGVFKQLMWQALADRTGVDLASLTELAQIQTPKPKPILAQD 120 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + L + + + + PS + L+ P + + E DI N+ + Sbjct: 121 LEPNSPNSLAPKPIQRHEKNSGPSKLALTCISLLLQRPDVATQVENE--DIAILNDSGES 178 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 L S L + +Q + + GELL +L + + Sbjct: 179 LLSELLTLLRKQPHSNTAMLLGHWYGTAEGELLARLAGEESII---------PFDGLPVQ 229 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ L + + + ++++I ++ +G + S L E+ ++ +ES Sbjct: 230 FKDCLRRLTK----HPKLKVLQERINDLSKRGIGSLSDTEKSELKELLAELRALES 281 >gi|260589349|ref|ZP_05855262.1| putative CHC2 zinc finger protein [Blautia hansenii DSM 20583] gi|260540430|gb|EEX20999.1| putative CHC2 zinc finger protein [Blautia hansenii DSM 20583] Length = 229 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%) Query: 15 IPISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 + I ++ + V + K CCPFHD++ PS KGF CF+C K Sbjct: 26 LNIFQVVKENVTARQAAEQYGLKVNKNGMV-CCPFHDDRHPSMKV--DKGFC-CFACGAK 81 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDLIRLIEVATD 126 GD ++F++ + +E+ ++LA +P+ K ++KEK + L + + + Sbjct: 82 GDVITFVADFFHLTPLEAAKKLAEDFRIPIFTDSSKKRNTGKEKEKPKRTLYQTEKKFEE 141 Query: 127 F 127 + Sbjct: 142 W 142 >gi|239622968|ref|ZP_04665999.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522620|gb|EEQ62486.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 210 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 11/107 (10%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + +P+ Y + +R ACCPFH+++ PS N+ ++YCF C Sbjct: 5 ETIKAAVPVRQAAEHYGLRVNRNG--------MACCPFHNDRNPSLKLNEE--YFYCFGC 54 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 KGD + F++ L S E+ QRLAA G+ + + Sbjct: 55 GAKGDVIDFVARLFDLSNYEAAQRLAADFGISTEPGQAVAVPHKTKR 101 >gi|182418565|ref|ZP_02949846.1| CHC2 zinc finger domain protein [Clostridium butyricum 5521] gi|237667978|ref|ZP_04527962.1| DNA primase related protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377568|gb|EDT75119.1| CHC2 zinc finger domain protein [Clostridium butyricum 5521] gi|237656326|gb|EEP53882.1| DNA primase related protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 856 Score = 88.8 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 14/89 (15%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYY 63 + ++ + + I IG+ + Y CPFH EKTPS N +K Y Sbjct: 4 LNEIDLKVLIEQEIGE---------KFNRDGYI-KCPFHSEKTPSMSVKFFPNANKQRYK 53 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92 C+ C KGD + F+ + E+ + L Sbjct: 54 CWGCECKGDAIDFIMNYKNMKYNEAREYL 82 >gi|323451887|gb|EGB07763.1| hypothetical protein AURANDRAFT_9441 [Aureococcus anophagefferens] Length = 56 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%) Query: 15 IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73 I + ++ + R WA CPFHDE+T SF N +G Y CF C GD Sbjct: 1 TDIVAVAEHLGLELETRGAAT-----WALCPFHDERTASFSLNSERGLYKCFGCGAGGDV 55 Query: 74 L 74 + Sbjct: 56 I 56 >gi|39939055|ref|NP_950821.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722164|dbj|BAD04654.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 441 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 91/430 (21%), Positives = 164/430 (38%), Gaps = 76/430 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57 MNY +D I + + P+ V + Y CP H P+ H Sbjct: 1 MNY-QDKINHIKTNFPMI------VLLKKLNIIPPNFNTKYRFPCPIHQGNNPTCCHLTS 53 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAA---------------------- 94 +C+ C D + + G +F +++++ Sbjct: 54 DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTATPNISY 112 Query: 95 ---IAGVPLPVVDPKIEKKE------KIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141 ++ I++KE ++ ++ L D++H+ L R+ H Sbjct: 113 KPFKYQFQPNKINNPIDEKEINTTKTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGLE 172 Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 Y +R + I+ FKLGYAP S + L + +++ K++E G + + N Sbjct: 173 YLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYCKKQNIDTTKLVEYGFVKEKTNQQN 232 Query: 198 ---SYDRFRNRLIFPIRSSRGQVIAFGGR-----TLSKGESVKYLNSPETILFHKGKNLY 249 +D F +I PI + + F T + + N +T FH Y Sbjct: 233 KKYYHDTFHGSIIIPIENGYNKTFHFYQNHFRDTTYFQPKYQSLNNFSQTPTFHFS---Y 289 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307 FF AL Y++K + II+ EG+ DV+S Q G++NVV + A L++ Q+ Sbjct: 290 RFFEALPYIKK----------TKTIIIHEGFFDVISCLQHGIKNVVGLICVAQLLSQTQM 339 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365 +L K ++++ D D+ G + + + IP + +D D +R Sbjct: 340 DILKKEKIKVIIALDNDETGRKRNAALGEQLKEQQIPYEIRRILSPYDKTCKDVDDLLRQ 399 Query: 366 YGKTAFEKLI 375 YGK A++K Sbjct: 400 YGKEAYQKCF 409 >gi|119714237|ref|YP_919379.1| DNA primase catalytic core [Nocardioides sp. JS614] gi|119526146|gb|ABL79516.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp. JS614] Length = 1980 Score = 88.4 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 84/415 (20%), Positives = 138/415 (33%), Gaps = 39/415 (9%) Query: 99 PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + + + + + L + A +F + G D + Sbjct: 1559 EVTAENAFPDPNQIPAERIHELNQQALAYFESCYPRSWAPDYLRERM--GTDLTDQPNYA 1616 Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS---YDRFRNRLIFPIRSSRG 215 LGYAP SL HL +G + +++ +AGL+ + + D FR+RL+ PIR Sbjct: 1617 LGYAPGGGRSLMRHLTDQGATLDELTQAGLVSQRERDDGTTYCRDFFRDRLVLPIRDPHD 1676 Query: 216 ----QVIAFGGRTLSKGES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 ++ F GR KYLN+ T +F KG+ L+ + A L Sbjct: 1677 PTSEAILGFVGRRNPTKTDDDFAGPKYLNTRNTSIFTKGEALFGYAEARELLANGALP-- 1734 Query: 267 RRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIV 318 ++VEG MD L+ L G ++ +GTALT Q++LL RI Sbjct: 1735 --------VIVEGPMDALAITLGSNGAAVGLAPMGTALTINQIKLLRANIEMVNGRDRIA 1786 Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 + D D G ++A KA + L G DP G A I Sbjct: 1787 VATDSDPAGWKSAQKAF---WHLTAADLDPTQLELPDGLDPAKLFETEGADAIAAAIENR 1843 Query: 379 LPLVDMLWKRETENR-SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 PL D + ++ D R +L + + + + +R +L Sbjct: 1844 SPLGDAMIDHLLRTAGHWSETDVRQKLIHQAARILGSRGSESWLDGF-ERLRHKLHLAPG 1902 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQ--RLMQSSLVKGKLSKKPSLREAALLLT 490 + +N Q + + K + E L Sbjct: 1903 ILEHQTVTESMERDRNRPAYAQARIDEINAEERKRTAKADPQSRRRAAEQRLAAA 1957 >gi|327404127|ref|YP_004344965.1| CHC2-family protein [Fluviicola taffensis DSM 16823] gi|327319635|gb|AEA44127.1| zinc finger, CHC2-family protein [Fluviicola taffensis DSM 16823] Length = 335 Score = 88.4 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 64/376 (17%), Positives = 127/376 (33%), Gaps = 48/376 (12%) Query: 1 MNYPRDFIKDLLIHIPISNL-IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + + L + I+ + I ++ R+ C H+E TPS ++ K Sbjct: 1 MKFD---LNRLRE-LSITEVAIKLGIEVKRK---------KVLCFMHEENTPSLEFDEKK 47 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQR-----LAAIAGVPLPVVDPKIEKKEKIQ 114 G ++C C+ GD ++ + G +F+ S L A + P ++K+ + Sbjct: 48 GMFFCHGCNQGGDVITLVEKYSGSNFLSSCSWLENAFLGGTANIQ-QFSSPSLKKRVIPK 106 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ ++ K YL RG IE ++ S+ Sbjct: 107 IEIH-ANSEIYEWLIS--HATISKSGIDYLKNRGFKESIIEQMQIRDL--QHPSIFFEDL 161 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 +K + +++++ GL + D + + ++FP +V R ++ E Sbjct: 162 RKKWGDDQLLNCGLAKNHDKYGITSIWWDPVILFPFIDPVSRVNYIQARRINNKEPKYLN 221 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 L NL + + EG D LS+ Q G + Sbjct: 222 L---IGLIKPTYNLSCLQQMK--------------LGDHLFICEGIPDTLSMIQLGYYCI 264 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 ++ + + L + I++ D DD G R K L G + L Sbjct: 265 GVLGASSFDKSLIPAL--MDFEIIVIPDRDDAGERFFQK---LRSEFNSVGKSIAKRQLP 319 Query: 355 RG-EDPDSFIRCYGKT 369 +D + ++R + Sbjct: 320 NNFKDVNEYLRSNSRN 335 >gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822] gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822] Length = 1087 Score = 88.4 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 5/77 (6%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 I+ L + + ++IG+Y+ R N Y CP H+ K P+ K Sbjct: 239 KIDGSIIERLHKKVDLLSVIGEYIPLYERGKN-----YVGHCPVHESKAPNLMVYPDKKM 293 Query: 62 YYCFSCHVKGDHLSFLS 78 + C C + G+ +FL Sbjct: 294 FTCHDCGIGGNIFNFLQ 310 >gi|124008858|ref|ZP_01693545.1| DNA primase [Microscilla marina ATCC 23134] gi|123985546|gb|EAY25438.1| DNA primase [Microscilla marina ATCC 23134] Length = 174 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 12/90 (13%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I D+ ++ I+ ++ Y +N + CCPFHD+K PS +CFS Sbjct: 14 TISDIKQNLSITTVLAHY-GLSVNGSNRL------CCPFHDDKKPSMEMFPKSDTVFCFS 66 Query: 67 --CHVKG---DHLSFLSALLGCSFIESVQR 91 C V G D + F+ S E++ + Sbjct: 67 SNCKVHGKPIDVIDFVMHQEKLSKHEAILK 96 >gi|160944425|ref|ZP_02091653.1| hypothetical protein FAEPRAM212_01935 [Faecalibacterium prausnitzii M21/2] gi|166033496|ref|ZP_02236325.1| hypothetical protein DORFOR_03222 [Dorea formicigenerans ATCC 27755] gi|226325442|ref|ZP_03800960.1| hypothetical protein COPCOM_03247 [Coprococcus comes ATCC 27758] gi|282601123|ref|ZP_05980798.2| DNA primase [Subdoligranulum variabile DSM 15176] gi|293115434|ref|ZP_06604509.1| DNA primase [Butyrivibrio crossotus DSM 2876] gi|158444207|gb|EDP21211.1| hypothetical protein FAEPRAM212_01935 [Faecalibacterium prausnitzii M21/2] gi|166026681|gb|EDR45438.1| hypothetical protein DORFOR_03222 [Dorea formicigenerans ATCC 27755] gi|225206185|gb|EEG88539.1| hypothetical protein COPCOM_03247 [Coprococcus comes ATCC 27758] gi|282570728|gb|EFB76263.1| DNA primase [Subdoligranulum variabile DSM 15176] gi|292810003|gb|EFF69208.1| DNA primase [Butyrivibrio crossotus DSM 2876] Length = 227 Score = 88.0 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 5/119 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + ++CF C GD + F++AL G E+ +LA+ G+ Sbjct: 42 MACCPFHNDKTPSMKLDK---RFHCFGCGADGDVIDFVAALYGLGKKEAAAQLASDFGLA 98 Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156 P + K + Q A L + + D Sbjct: 99 YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVLADYLHLLRVWKTDYAPHSPEEAFH 157 >gi|291086761|ref|ZP_06344373.2| DNA primase [Clostridium sp. M62/1] gi|291076865|gb|EFE14229.1| DNA primase [Clostridium sp. M62/1] Length = 227 Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 5/119 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + ++CF C GD + F++AL G E+ +LA+ G+ Sbjct: 42 MACCPFHNDKTPSMKLDK---RFHCFGCGADGDVIDFVAALYGLGKKEAAAQLASDFGLA 98 Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEM 156 P + K + Q A L + + D Sbjct: 99 YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVLADYLHLLRVWKTDYAPHSPEEAFH 157 >gi|291537750|emb|CBL10861.1| DNA primase (bacterial type) [Roseburia intestinalis XB6B4] Length = 96 Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH+++ PS + D +YCF+C GD + F + E+ QRLAA GV Sbjct: 29 KALCPFHNDRHPSLYVADDH--FYCFACGAHGDVIDFAANFFDLPLYEAAQRLAADFGVD 86 >gi|325263239|ref|ZP_08129974.1| DNA primase [Clostridium sp. D5] gi|324031632|gb|EGB92912.1| DNA primase [Clostridium sp. D5] Length = 227 Score = 87.6 bits (215), Expect = 5e-15, Method: Composition-based stats. Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 7/164 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +KTPS + YYCF C GD + F+S+L G ++ ++L G+ Sbjct: 29 MACCPFHPDKTPSMKVD---QRYYCFGCGETGDVIDFVSSLFGLGKKDAAEKLILDFGI- 84 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 + D + +K + + E + + L+ ++ + + + +K Sbjct: 85 --LYDNEQFQKNGKKRKQTKQAERGSPKYTE-LEERLEEMVEHSFGVLCDYMLWLRSWKE 141 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 YAP L + + I L I + Sbjct: 142 EYAPKPDDENWHPLFVEALAMITYINYQLDILQYGLFEEKAMWM 185 >gi|119714105|ref|YP_919247.1| DNA primase catalytic core [Nocardioides sp. JS614] gi|119526014|gb|ABL79384.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp. JS614] Length = 1967 Score = 87.6 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 152/398 (38%), Gaps = 39/398 (9%) Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +I + E+ FF ++ + GID E F+ G AP +L +HL Sbjct: 1510 RERMIEINEITQTFFESRFTDSWGRDYL--TGRFGIDLAGHEHFRPGQAPAGWTNLVDHL 1567 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------ 227 R +G S +++ G+ ++ DRFR+R++FP+ G+V+ F GR + Sbjct: 1568 RHRGVSGAEMLATGVAT-TASTGRLIDRFRDRVMFPVVH-NGEVLGFVGRRRPELTDADQ 1625 Query: 228 ---GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 KYLN+ +T LFHKG LY D + ++VEG MD + Sbjct: 1626 ANGRGGPKYLNTADTPLFHKGAQLYG------------VVDELLAEGAVPVIVEGPMDAI 1673 Query: 285 S--LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 + L A V+ LGT+LT+ Q L + ++ D D G AA + ++ H Sbjct: 1674 AVTLASAARYVGVAPLGTSLTDEQASQLGGIGRDPIVATDADLAGEVAAERDFWMLTPH- 1732 Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 G + G DP + G A + L D L +N + A Sbjct: 1733 --GLDPGYARFPEGLDPADLLAQRGPAALTASLASGQTLGDQLLSERLDNLAPEQARVAA 1790 Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 + + L +R RL+ + + + W + R + Sbjct: 1791 MRVLAARPSRAWAPGTNL-------VRARLKLSQLQSRRDLRDAIKAWDADPRRAARAEL 1843 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + ++ +K P+ R A L + P + ++ Sbjct: 1844 NSSSEVRARLEAAAAKSPAERWAPLAREV--DPRLAEQ 1879 >gi|317055406|ref|YP_004103873.1| DNA primase [Ruminococcus albus 7] gi|315447675|gb|ADU21239.1| DNA primase [Ruminococcus albus 7] Length = 197 Score = 87.6 bits (215), Expect = 6e-15, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 20/149 (13%) Query: 3 YPRDFI-KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 +P+ + ++ + + + Y + +R CPFH EKTPS Sbjct: 2 FPKITVFEEARQAVDMKTVALGYGLHINRSG--------MCLCPFHAEKTPSAKVYP--Q 51 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLP-------VVDPKIEKKEK 112 +CF C D +SF + G + ++V++L + G+ + + K+ + Sbjct: 52 RLHCFGCGESADVISFTQKMFGLAKPIDAVKKLNSDFGLNISIGQAPTAKEASEYVKRAE 111 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLH 141 + + + A + L RD + + Sbjct: 112 ERRAYEQWEKQAWRTLNDYLWLMRDWQEY 140 >gi|257438315|ref|ZP_05614070.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257199277|gb|EEU97561.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 88 Score = 87.2 bits (214), Expect = 7e-15, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 31 KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90 N ACCPFH++KTPS + Y+CF C GD + F +AL G E+ Sbjct: 25 GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAV 76 Query: 91 RLAAIAGVPLP 101 +LA G+ Sbjct: 77 QLANDFGLSYE 87 >gi|148245108|ref|YP_001219801.1| DNA primase related protein [Clostridium kluyveri DSM 555] gi|219684068|ref|YP_002470450.1| hypothetical protein CKR_P40 [Clostridium kluyveri NBRC 12016] gi|146336988|gb|ABQ23599.1| DNA primase related protein [Clostridium kluyveri DSM 555] gi|219570576|dbj|BAH08559.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 868 Score = 87.2 bits (214), Expect = 8e-15, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 8/76 (10%) Query: 43 CPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 C FH +K PS N++K + CF C GD + F+ +IE+ + L G+ Sbjct: 30 CMFHPDKNPSLSIKFDGNNNKFKFKCFGCGEGGDAIDFIMKYRNMDYIEAREFL----GL 85 Query: 99 PLPVVDPKIEKKEKIQ 114 P+ + + + + + Sbjct: 86 PVEKTESENQMERIEK 101 >gi|319902214|ref|YP_004161942.1| DNA primase [Bacteroides helcogenes P 36-108] gi|319417245|gb|ADV44356.1| putative DNA primase [Bacteroides helcogenes P 36-108] Length = 1033 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 34/172 (19%), Positives = 59/172 (34%), Gaps = 15/172 (8%) Query: 1 MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCN 56 M + ++ IK + + ++IG + + +R + +Y CP EK H + Sbjct: 17 MYFTQNDIKRIKEASKGRLLDVIGDFHELRKRGS-----EYKCECPKCHGQEK---LHIS 68 Query: 57 DSKGFYYCFSC-HVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL-PVVDPKIEKKEKI 113 +K + CFSC +KG L +L F+E+ LA V L P + K K K+ Sbjct: 69 PAKQIFKCFSCPDIKGTEPLDYLQRAEDMQFLEACDYLARKFNVLLDPKPEKKTPKAAKM 128 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + D F + +F+ Sbjct: 129 KKRSKEAKGENVDTFCARMLAGSGLTYQDVTAHIFKKGDTQSIFEAKTFRPG 180 >gi|299783171|gb|ADJ41169.1| DNA primase [Lactobacillus fermentum CECT 5716] Length = 277 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 96/275 (34%), Gaps = 21/275 (7%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MDV+S AGV++ ++S+GT+ T+ Q+ ++ + + ++ +C+DGD G A +A+ + Sbjct: 1 MDVISAFGAGVRSGIASMGTSFTDEQVAVIARTTDKLTICYDGDAAGQNAINRALTM--- 57 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES-LPLVDMLWKRETENRSFNTPD 399 + V L G DPD +++ G+ F++ + + + + Sbjct: 58 LAASRLTLRVVQLPAGMDPDEYVQANGQAKFQEYLAHAEETPTAFRLHFLKQGLNLANQS 117 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIR--------------DRLQQLFQKYITEHSG 445 E + + D R Y Q + L Sbjct: 118 ELLHYVEAALREVAKVTDPVERDLYIQQLAKDYHLNPATLTGQVQELAATAAPRPAYPEX 177 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 R ++ R Q P S L K L + LL + ++PA ++ + Sbjct: 178 SPRQPRQAGTRRYQSTPPTTTTAPSTQAPPLLGKVELAQQRLLREMFHNPA-VRSHVGAI 236 Query: 506 ADIRYDNNELQKLWSFLFSDFVE--QKYFLPEEIH 538 + + + Q L + ++ Sbjct: 237 ENFHFVDRPYQLLDAAAKEQLQRTGADEVDVAQLM 271 >gi|77414850|ref|ZP_00790964.1| DNA primase [Streptococcus agalactiae 515] gi|77159100|gb|EAO70297.1| DNA primase [Streptococcus agalactiae 515] Length = 283 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 99/305 (32%), Gaps = 22/305 (7%) Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 +DGD G A K+++L+ V+ V + DPD F++ F++L+ Sbjct: 1 YDGDRAGQNAIDKSLELL-----SDMTVDIVRIPNKMDPDEFLQANSAEDFKQLLENGRI 55 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + + + + + I + Y + + L + Sbjct: 56 SNTEFYIHYLKPENTDNLQSEIAYVEKIAKLIAKSPSITAQNSYITKVAELLPDFDYFQV 115 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + R ++ + + +Q L + + E L L+NHP +L E Sbjct: 116 EQSVNNERLHHRSQQQASSSVQTSATVQ--LPQTGKLSAITKTEMQLFHRLLNHPYLLNE 173 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + +D E+Q L+ L + + +++R Sbjct: 174 FRNR-DNFYFDTTEIQVLYELLKESGE-------------ITSYDLSQESDKVNRTYYII 219 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 E +I ++ + ++A + R L +Q + I + Q +G LI+ Sbjct: 220 LEEQLPVEVSIGEI-EAVEKARDRLLKERDLRKQSQLIRQSSNQGDEEGALAALENLIAQ 278 Query: 621 LHEVH 625 + Sbjct: 279 KRNME 283 >gi|257414234|ref|ZP_05591948.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257200738|gb|EEU99022.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 277 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 10/272 (3%) Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + +DPD FI+ G ++K I + + + + P+ + + + + Sbjct: 1 MKPYKDPDEFIKALGAEEYQKRIDTAENSFMFEIRILEQQYDMHDPESKTKFYNAVAEKL 60 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 ++ R Y A+ D+ + + YG A L + Sbjct: 61 CTFGEKLERDNYIAAVADKYMIGIEDLRRLVNQYGAKIGMAAGGAPPVRERSELRREQGS 120 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + K + LL LI H + + + ++ + K L+ + Sbjct: 121 EKKKENGMIQSQKLLLTWLIEHTGLFPKIEKYISPEDFTEEIYHKAAEILYEQYRNTGTV 180 Query: 533 LPEEIHQRLCERGFGELLKQL----------DRQVRDAGLWSATTEANIVDVRQGYQQAL 582 P +I + L + + G T E + + +Q Sbjct: 181 NPAKIVSMFQNEEEQREIAGLFHATIRGVETEGDKENGGYSKETFEKALKETIVRVKQNS 240 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 Y + +++ +A A E EK Sbjct: 241 IEYHLKNMAPTDMAALQRSVADKKALEELEKV 272 >gi|240145189|ref|ZP_04743790.1| putative DNA primase [Roseburia intestinalis L1-82] gi|257202745|gb|EEV01030.1| putative DNA primase [Roseburia intestinalis L1-82] gi|291537613|emb|CBL10725.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1] Length = 161 Score = 86.9 bits (213), Expect = 9e-15, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH+++ PS + D +YCF+C GD + F + E+ QRLAA GV Sbjct: 29 KALCPFHNDRHPSLYVADDH--FYCFACGAHGDVIDFAANFFDLPLYEAAQRLAADFGVD 86 Query: 100 ---------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132 L K E ++ + ++ A +++ L Sbjct: 87 ANQPPTKEVLEKRRQKAEAPDERFEEACHKLDEA-EYYLDIL 127 >gi|317056911|ref|YP_004105378.1| DNA primase [Ruminococcus albus 7] gi|319788915|ref|YP_004090230.1| DNA primase [Ruminococcus albus 7] gi|315449180|gb|ADU22744.1| DNA primase [Ruminococcus albus 7] gi|315450782|gb|ADU24344.1| DNA primase [Ruminococcus albus 7] Length = 204 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 67/198 (33%), Gaps = 18/198 (9%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 ++ + + Y +G+ A CPFH E+ PS D YYCF C Sbjct: 5 DEVKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYDDH--YYCFGCQ 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 GD + + L G S IE+V++L + + L V P +K + + E + Sbjct: 56 AHGDVIKLVQELFGLSSIEAVKQLNSDFALGLDVDKPPDMEKVNRRRR--EIAERKAE-- 111 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 AR + ++ L +M + +PD R + + + Sbjct: 112 -----KARAEHMYDVLLRYFTLLDKYKMLYVPTSPDDETDRRFVYALQNIGYAEYMLETF 166 Query: 189 LIDGDNSATSYDRFRNRL 206 +R+ Sbjct: 167 NRFDKEQQEEIKTEVDRI 184 >gi|291086756|ref|ZP_06344357.2| putative CHC2 zinc finger protein [Clostridium sp. M62/1] gi|291076847|gb|EFE14211.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1] Length = 1097 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + +PI Y ++ R ACCPFHD+K PS N+ ++YCF C Sbjct: 6 ETVKQSVPIKEAAQMYGIEVKRGG--------MACCPFHDDKHPSMKLNED--YFYCFGC 55 Query: 68 HVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDP-------KIEKKEKIQTDLIR 119 GD + + L F E+ ++LA G+ P + + +K + Sbjct: 56 GATGDVIELTARLYNL-FPKEAAEKLAQDFGLIYDSQAPPRRYYVRQKSEAQKFKESRDH 114 Query: 120 LIEVATDFFH 129 V D+FH Sbjct: 115 AFRVLADYFH 124 >gi|20808421|ref|NP_623592.1| DNA primase [Thermoanaerobacter tengcongensis MB4] gi|20517037|gb|AAM25196.1| DNA primase (bacterial type) [Thermoanaerobacter tengcongensis MB4] Length = 358 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 57/333 (17%), Positives = 100/333 (30%), Gaps = 39/333 (11%) Query: 15 IPISNLIGQYVDWDRRK----TNAVKGDYWACCPFHDE--KTPS---FHCNDSKGFYYCF 65 + I ++ R A +Y A CPF + K P + N SK YYC Sbjct: 5 LDILDVA------KRLGIRILRRASNEEYIARCPFCGDSKKDPEHGHLYLNVSKNVYYCV 58 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL--IEV 123 C GD + + L S E+ +R+ +P +++ + + IE Sbjct: 59 RCGEGGDAVDLYAKLENISRKEAYKRIKEEN----YPTNPAAKERADKRIKYNSVAPIET 114 Query: 124 ATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ--KGFSE 180 + L K + L +RG+ P+ E ++ K Sbjct: 115 RDKVYRAFLDKLVLEPEHRKKLLKRGLSWEETVKNLYKSLPEEPQQRWEICKELIKEGYN 174 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 K I + D + P++ +G++ F R + Sbjct: 175 LKGIPGFYQREKDGERYWDFVDYKGFLIPVKDVQGRIQGFQIRLDEEEFGKYVW------ 228 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 F L + V S +I+ EG + VS G Sbjct: 229 -FSSRNKLNGTP-------AHAWQGVHGEPSKVVIVTEGPLKADVAHYLSRFTFVSVPGV 280 Query: 301 ALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAY 332 + +L + + +I + FD D +A Sbjct: 281 TAIKGIEVVLKQLGAEKIYIAFDMDSLTNKAVQ 313 >gi|283795091|ref|ZP_06344244.1| DNA primase [Clostridium sp. M62/1] gi|291076733|gb|EFE14097.1| DNA primase [Clostridium sp. M62/1] Length = 209 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 16 PISNLIGQYVDWDRRKT--NAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 I ++ + V+ Y A CPFH+++ PS + D YYCF+C GD Sbjct: 2 RIFEIVKENVNLREAAELYGIDVNRYGKALCPFHNDRNPSLYVADDH--YYCFACGEHGD 59 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122 + F+ L S ++ ++L A + K +T+ +L+E Sbjct: 60 VIDFVGKLFQLSPYDAARKLMADFHLSPDKPPSAAALHAKRIRTEAQQLME 110 >gi|119383200|ref|YP_914256.1| zinc finger, CHC2-family protein [Paracoccus denitrificans PD1222] gi|119372967|gb|ABL68560.1| zinc finger, CHC2-family protein [Paracoccus denitrificans PD1222] Length = 345 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 102/350 (29%), Gaps = 49/350 (14%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACC--PFHDEKTPSFHCND 57 M+ R ++ + IPI+ + R T C P H ++ PSF Sbjct: 1 MSRKRYDLERIKA-IPIATVAADLGFALSPRGT--------GRCRLPGHPDQRPSFSLRS 51 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 + CF C G + + A+ F+ + + L + + IQ L Sbjct: 52 ISNGFSCFGCQRSGSVIDLVMAMDNLDFLAACRWLDDNYLNSISAQPRSRRRPSTIQQTL 111 Query: 118 -----IRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 +A + + L ++ YL R + I F++G D R Sbjct: 112 PVPVQSSSHGMAPEVYGWILDQSPLSASGRAYLQRRAFSAETIAHFRVGQIGDRTSLFRR 171 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 L G + + + + G V R Sbjct: 172 ALSAFGMPRLEEAGLVM----QGRYGPLLCLPSNYLLFPFLQDGTVTYLQAR-------- 219 Query: 232 KYLNSPETILFHKGKNL---YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + + E F K L YN S I + EG DVLS + Sbjct: 220 RADDGKEYRWFCPAKLLPPPYNLD-------------ALAKPGSTITICEGITDVLSAHE 266 Query: 289 AGVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDL 337 G+ + L A+ ++ + + + D D G A + D Sbjct: 267 LGMLPI--GLLGAMRNLGTDIIDRLIGRNVAIFADADRSGRSLAKRLSDR 314 >gi|323484963|ref|ZP_08090317.1| hypothetical protein HMPREF9474_02068 [Clostridium symbiosum WAL-14163] gi|323401705|gb|EGA94049.1| hypothetical protein HMPREF9474_02068 [Clostridium symbiosum WAL-14163] Length = 214 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 29 MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAVQLAQDFGLS 85 Query: 100 LP--VVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132 K +K + Q + A + L Sbjct: 86 YEDWKPTGKAKKPKPRQKSPEEQFQEAKNRCFRIL 120 >gi|317057152|ref|YP_004105619.1| DNA primase [Ruminococcus albus 7] gi|315449421|gb|ADU22985.1| DNA primase [Ruminococcus albus 7] Length = 195 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 48/134 (35%), Gaps = 19/134 (14%) Query: 9 KDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + I + + Y ++ R A CPFH+E+TPS +CF C Sbjct: 5 EQVKSAIDMRTVAEGYGLEISRGG--------MALCPFHNERTPSAKIYPD--ALHCFGC 54 Query: 68 HVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLP-------VVDPKIEKKEKIQTDLIR 119 D + F + G ++V++L G+ + + +K+ + + Sbjct: 55 GTHVDVIGFTQKMFGLDKPIDAVKKLNEDFGLNIEIGKAPAAKEVSEYQKRVQEKRAYEE 114 Query: 120 LIEVATDFFHHSLK 133 + A + L Sbjct: 115 WEKSAWRTLNDYLW 128 >gi|283796850|ref|ZP_06346003.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1] gi|291075256|gb|EFE12620.1| putative CHC2 zinc finger protein [Clostridium sp. M62/1] Length = 916 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 60/525 (11%), Positives = 147/525 (28%), Gaps = 18/525 (3%) Query: 13 IHIPISNLIG---QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + + L+ +Y ++ + CPFHD++ SF + G ++CF+ Sbjct: 5 AEVDLDRLVDYKTEYCSVIKK-HKITGDNLTGLCPFHDDRANSFSVDLKTGMWHCFAEDE 63 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 G+ ++F + L G E+ +++ G + ++K K + + V+ F Sbjct: 64 GGNFVTFYAKLNGLDTKEAYKQILEKYG-----ALNEPQEKPKEKKPGLDHYTVSQYSFE 118 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 L K ++ + A + R+ K F E L Sbjct: 119 KRLPEDWLKEQCCLQTKKDRNGVQYLYIPYFDAEKNLALHRKRYGGKQFRWEYGKTDRLC 178 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249 + G + + S + G TL + + + LY Sbjct: 179 MYGLWQIEAIRNIGYAALVEGESDSQSMWYMGISTLGIPGASMMR--ADWAGVLQDLKLY 236 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 + + K R + +L V G ++R Sbjct: 237 IHVEPDKGGEAFLAKVTRALREGKFVGEVYKWSCRTLGCKDPSEVYMKYGKEEASEKIRK 296 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 + +I + D + A + + ++ + + T Sbjct: 297 AISNAEQIDIEEDNIPEAVEGAPVNLRQPEGWIYSEKGISVIDEKKYAPVMVCRTPIIIT 356 Query: 370 AFEKLIVESLPLVDMLWKR---ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 + + +++ +KR + + + L + + + + + + Sbjct: 357 QRLRSMETGEEKIEVAFKRDGQWHKAIYPRSTIFTSRAITALADLGCTVTSENAK-HIVK 415 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REA 485 + + S W+ R L +G + A Sbjct: 416 FLAALEAENIDIIKKADSTSTFGWQSGKRFVPGHDKDIVLDIDPSQRGMAAAYCQNGTMA 475 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 L + P +++++ + + L+ + +F + Sbjct: 476 DWLKMI--KPHRSRDKFRFILAASFTAPLLRIIKQRIFFVYNWGG 518 >gi|295094133|emb|CBK83224.1| DNA primase (bacterial type) [Coprococcus sp. ART55/1] Length = 206 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 16 PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + + V + +GD CCPFHD++ PS N ++YCF C G Sbjct: 2 NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGATG 58 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 D + F++ L G S E+ ++LA G+ Sbjct: 59 DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90 >gi|295104069|emb|CBL01613.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] Length = 206 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 7/92 (7%) Query: 16 PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + + V + +GD CCPFHD++ PS N ++YCF C G Sbjct: 2 NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGATG 58 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 D + F++ L G S E+ ++LA G+ Sbjct: 59 DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90 >gi|210612416|ref|ZP_03289304.1| hypothetical protein CLONEX_01505 [Clostridium nexile DSM 1787] gi|210151586|gb|EEA82593.1| hypothetical protein CLONEX_01505 [Clostridium nexile DSM 1787] Length = 214 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 9/87 (10%) Query: 31 KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90 N ACCPFH++KTPS + Y+CF C GD + F +AL G E+ Sbjct: 25 GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAV 76 Query: 91 RLAAIAGVPLPV-VDPKIEKKEKIQTD 116 +LA G+ P KK K + Sbjct: 77 QLAQDFGLSYEDWKSPGKAKKPKPRQK 103 >gi|210613280|ref|ZP_03289645.1| hypothetical protein CLONEX_01852 [Clostridium nexile DSM 1787] gi|210151241|gb|EEA82249.1| hypothetical protein CLONEX_01852 [Clostridium nexile DSM 1787] Length = 227 Score = 85.7 bits (210), Expect = 2e-14, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89 N ACCPFH++KTPS + Y+CF C GD + F +AL G E+ Sbjct: 37 AGRNG-----MACCPFHNDKTPSMKLD---QRYHCFGCGADGDVIDFTAALYGLGKKEAA 88 Query: 90 QRLAAIAGVPLP 101 +LA G+ Sbjct: 89 VQLAQDFGLSYE 100 >gi|302534591|ref|ZP_07286933.1| predicted protein [Streptomyces sp. C] gi|302443486|gb|EFL15302.1| predicted protein [Streptomyces sp. C] Length = 139 Score = 85.3 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 CPFH++ TPSF N + + C SC GD + + G F+ + + LAA Sbjct: 42 CPFHEDDTPSFSWNTDRQLWKCHSCGKGGDSFNLIMEKEGTDFVGA-RALAA 92 >gi|153812928|ref|ZP_01965596.1| hypothetical protein RUMOBE_03335 [Ruminococcus obeum ATCC 29174] gi|149831006|gb|EDM86096.1| hypothetical protein RUMOBE_03335 [Ruminococcus obeum ATCC 29174] Length = 206 Score = 85.3 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 14/109 (12%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 + N + CCPFH++ PS N + +YYCF C GD + F++ L G S E+ Sbjct: 23 KIGRNNMI-----CCPFHNDHYPSMKLNTT--YYYCFGCGATGDVIQFVANLFGLSNYEA 75 Query: 89 VQRLAAIAGVPLPVV-------DPKIEKKEKIQTDLIRLIEVATDFFHH 130 +++A G+ P+ + + Q +L ++ ++ H Sbjct: 76 AKKIAVDFGITPDNPPVIAALKKPEYMETKSRQKELHECQKMVCEYLHR 124 >gi|119715816|ref|YP_922781.1| DNA primase catalytic core [Nocardioides sp. JS614] gi|119536477|gb|ABL81094.1| DNA primase catalytic core, N-terminal domain [Nocardioides sp. JS614] Length = 1797 Score = 85.3 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 94/354 (26%), Positives = 140/354 (39%), Gaps = 29/354 (8%) Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 +I L A D + + D G D +++GYAP SL +HL Sbjct: 1412 ERIIELNHWALDHYSAMYPKSWAPDYL--RDRLGNDLTDDPRYQVGYAPPGPTSLIQHLA 1469 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES---- 230 +G SEE++++AGL + D FR+RL+FPI S V G R +K + Sbjct: 1470 TRGTSEEELLDAGLARRTERGH-LVDAFRDRLVFPIYSGSDLVGFIGRRNPTKPDGEFSG 1528 Query: 231 VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQ 288 KYLN+ T +F KG+ L+ A ++ S +LVEG MD ++ L Sbjct: 1529 PKYLNTRSTAVFAKGEALFGLTEA----------TADLDAGSTPVLVEGPMDAIAVTLAS 1578 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 G ++ LGTA TE Q L IV+ D D G ++A +A + Sbjct: 1579 GGEYVGIAPLGTAFTETQAATLKPHLREAPSNIVIATDPDSAGWQSAQRAFWRLAALRAA 1638 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 + L G DP +R +GK A + +S +L R ++ T D+ Sbjct: 1639 ---PRHLTLPEGVDPADALRKHGKAALRTGLADSRDFALVLVDRVLDD-RLATHDDAFAR 1694 Query: 405 EIHLKNCINHIK--DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH 456 H + I Y+Q +RL Q I E G W + R Sbjct: 1695 VDHCREAARTIGTLAPDRWLAYAQHASERLDLPLQAVIDEVLEAGAEWTDDPRA 1748 >gi|39939010|ref|NP_950776.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722119|dbj|BAD04609.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 441 Score = 85.3 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 89/438 (20%), Positives = 164/438 (37%), Gaps = 80/438 (18%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPS-FHCNDSKG 60 + I + + P+S V + Y CP H + P+ H N++ Sbjct: 3 NQTKINHIKTNFPMS------VLLKKLNILPPNFNDKYRFPCPIHQGQNPTTCHINENNN 56 Query: 61 FYYCFSCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGV-------PLPVVDPKIEK--- 109 +C+ C D + + +F E V R+ L + + K Sbjct: 57 I-HCWKCGRDYDVIDVYQEVRRNKNFPEVVNRI---YHFMKTQEFKTLNQQEKESNKITT 112 Query: 110 -----------------------KEKIQTDLIRLIEVATDFFHHSLKNARDKRLH----Y 142 K ++ ++ L D++H+ L + R+ H Y Sbjct: 113 NPFKKPYQSQTSHPIDETQIQLIKNQLFKEISPLFNQIRDYYHYLLTSNRNNESHLGIEY 172 Query: 143 YLDERGIDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSAT- 197 +R + I+ FKLGYAP S L++K + +K++E G + + N Sbjct: 173 LTQKRKLTLETIKEFKLGYAPLSNKPLSFRFINFLKKKNINIDKLLEYGFIKEKTNHQGT 232 Query: 198 --SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK-----YLNSPETILFHKGKNLYN 250 +D F +I PI + Q F + + N +T F+ Y Sbjct: 233 KYYHDTFHGSIIIPIENGYHQTFHFYQNHFRETSYFQPKYQSLTNFSQTPTFYFS---YR 289 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308 FF AL Y++ + II+ EG+ DV+S Q G++NVV + L++ Q+ Sbjct: 290 FFEALPYIK----------QTKTIIIHEGFFDVISCYQYGIKNVVGLICVTQLLSQVQIE 339 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCY 366 +L + ++++ D D+ G + + + + IP + +D D +R Y Sbjct: 340 ILKTENIKVIIALDNDETGRKRSEVLGKQLKLNQIPYEIRRILPPYDETCKDVDDLLRQY 399 Query: 367 GKTAFEKLIVESLPLVDM 384 GKTA++K ++ + Sbjct: 400 GKTAYQKCFLDPYITYEE 417 >gi|225573548|ref|ZP_03782303.1| hypothetical protein RUMHYD_01741 [Blautia hydrogenotrophica DSM 10507] gi|225039090|gb|EEG49336.1| hypothetical protein RUMHYD_01741 [Blautia hydrogenotrophica DSM 10507] Length = 161 Score = 84.9 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 58/168 (34%), Gaps = 24/168 (14%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67 +++ + +I +Y + + + CPFH ++ S D ++CF C Sbjct: 4 EEIKERYSMREIIARY------GLYPNRSGFIS-CPFHKGDREASMKIYDKD--FHCFGC 54 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEKIQ-----T 115 GD SF+ + SF E+ Q L + + + E ++K + Sbjct: 55 GANGDIFSFVQRMEDISFREAFQSLGGTYQSPTFSSQLAIYRAKKRQEMRQKKKEREAQE 114 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAP 163 L+ + ++ F LK + + + +L P Sbjct: 115 RLLNIKKIGA--FQEQLKKLQPLSEEWCECYNALQYQLYVHGELNGIP 160 >gi|284989333|ref|YP_003407887.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160] gi|284062578|gb|ADB73516.1| TrwC relaxase [Geodermatophilus obscurus DSM 43160] Length = 1836 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 137/373 (36%), Gaps = 30/373 (8%) Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + LI L A FF + + G D A F GYAP +L +HL Sbjct: 1460 RDRLIALNTQAAAFFTDRYVTSWAPGYL--RERLGTDLTADPRFSPGYAPAGWTALVDHL 1517 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES--- 230 R G +E++++ AGL + DRFR+RL FPI +G V+ F R Sbjct: 1518 RGLGATEDELLAAGLA-QCARTGALIDRFRDRLTFPIHDLQGTVVGFIARRNPTAPHDGP 1576 Query: 231 --VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD--VLSL 286 KYLN+P T L+ KG++L+ A L LVEG +D L+L Sbjct: 1577 AGPKYLNTPGTDLYRKGEHLFGLHEARAALTADATPA----------LVEGPLDALALAL 1626 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLS-----PRIVLCFDGDDPGLRAAYKAIDLVLCH 341 AG V++LGTALT+ Q LL P I++ D D PG +AA + + Sbjct: 1627 AGAGQTVGVATLGTALTDRQADLLRPYIRGGDGPGILVATDNDPPGRQAAER---IYWQL 1683 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK-RETENRSFNTPDE 400 G+ + L G DP + G TA + S L D L R T +P + Sbjct: 1684 TTRGDDPRRLALPDGLDPADLLHRDGPTALRTAVDTSSSLADSLLDARLTPAAHDRSPSD 1743 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 I + + + + + L Sbjct: 1744 IHTALRDAAAVIVALPPGRWLAH-IDRVTEVLGVPPGTVHRAVLDTEPITAAPRGATTGP 1802 Query: 461 GPSQRLMQSSLVK 473 + RL S + Sbjct: 1803 QRTSRLTPPSEDR 1815 >gi|291529692|emb|CBK95278.1| DNA primase (bacterial type) [Eubacterium rectale M104/1] Length = 490 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 65/457 (14%), Positives = 125/457 (27%), Gaps = 53/457 (11%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGFY 62 RD +++ + +S ++ + V + + A CPFH + T SF ND KG Sbjct: 23 RDIAEEVRG-LRLSEVLEHHGVHIE----IDTGSEKKALCPFHMDNTIGSFSINDDKGIC 77 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLA----------------AIA------GVPL 100 CF+C GD + + L S+ +++ +LA G+ Sbjct: 78 KCFACGGGGDAIHSMMQLNNMSYKDALLQLAADEQIISKEKFKELSQREYSDEFIKGMEG 137 Query: 101 PVVDPKIEKK--------EKIQTDLIRLIEVATDF---FHHSLKNARDKRLHYYLDERGI 149 P KK +K + + ++I+ L+ R + Sbjct: 138 PAEKMFSVKKSKVIESGEQKRRNAVYQIIKDVCGLKKEHEKYLREKRALSDARIKKDYFS 197 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209 S+ + + + L+ I + Y + + Sbjct: 198 ISNGKLTKVIKAVREQCPEYLDDLQTLPGFFTNIDYEFRGNEKVKKEKLYWSVSDGIGIL 257 Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269 IR + + A R E + N Y G + R Sbjct: 258 IRDAYDNIKAIQIRRDHIEEDEFRYVWFSSAFAMARGNKYTKGGGAVGAPIDVLFPQREK 317 Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK-------LSPRIVLCFD 322 ++ + + EG L Q G +S G + I + +D Sbjct: 318 PNTTLCVAEGRFKTEILSQWG-NVALSVQGVGNYSGIDDDIKNVIDVTGKKFDNIFVFYD 376 Query: 323 GDDPGLRAAYKAI-----DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 D A + L + G+ D + + Sbjct: 377 ADMLRNSAVFAQAMKLGQYLNQTMPELTVKYCIWPEYLGKGIDDMYLSNPDNVSQIRTFD 436 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 L+D+ K E + A+ + + + Sbjct: 437 EKYLMDIWSKEVLEIFAKLGIQSVAKTDKETREKFAN 473 >gi|240145576|ref|ZP_04744177.1| DNA primase [Roseburia intestinalis L1-82] gi|257202390|gb|EEV00675.1| DNA primase [Roseburia intestinalis L1-82] Length = 166 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 20/147 (13%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCF 65 + ++ + +++ Y + + + CPFH + T S Y CF Sbjct: 2 TVDEIKQSHSMCDIVESY------GFHPNRAGFV-PCPFHTGDHTASMKIYKDS--YNCF 52 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEKIQTDL- 117 C GD SF+ + C F + L + + + EK+++ + L Sbjct: 53 GCGANGDIFSFVQGMEHCDFKTAFYSLGGTYEKPTKASEMTIYHMQKAKEKRKREEESLK 112 Query: 118 --IRLIEVATDFFHHSLKNARDKRLHY 142 I L + LK + + Sbjct: 113 RKIDLNNQLIGIYVTWLKKSEPLSDVW 139 >gi|186471868|ref|YP_001863186.1| zinc finger CHC2-family protein [Burkholderia phymatum STM815] gi|184198177|gb|ACC76140.1| zinc finger CHC2-family protein [Burkholderia phymatum STM815] Length = 71 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 14 HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEK--TPSFHCNDSKGFYYCFSCHVKG 71 I ++ Q+V + YW CPFHDE+ T F N++ +YCF C G Sbjct: 2 ASDIIAVVSQFVSLQK-----GLRAYWGRCPFHDERGMT-HFSVNEATQRFYCFGCGRGG 55 Query: 72 DHLSFLSALL 81 FL + Sbjct: 56 SVDDFLRYIE 65 >gi|212702854|ref|ZP_03310982.1| hypothetical protein DESPIG_00886 [Desulfovibrio piger ATCC 29098] gi|212673716|gb|EEB34199.1| hypothetical protein DESPIG_00886 [Desulfovibrio piger ATCC 29098] Length = 496 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 64/373 (17%), Positives = 107/373 (28%), Gaps = 55/373 (14%) Query: 17 ISNLIGQYVDWDRRK-TNAVKGDYWACCPFHDEKTPSFHCND---SKGFYYCFSCHVKGD 72 I +LI K G++ CP K F G +YC C GD Sbjct: 13 IESLIQDR-GLKAVKVAGTHGGEWACPCPACGGKD-RFRFWPAQGEGGTWYCRQCDKGGD 70 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR-----------LI 121 + FL G S+ E+ +RL GV I + + Sbjct: 71 SIQFLREFEGLSYTEACRRL----GVERAAAPTSIMPRADKEERPWEPSPTPADPGPVWQ 126 Query: 122 EVATD---FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E A + H L D+ +L RGI A+E F+LG+ P H + + Sbjct: 127 EHAAKLLDYAHAKLLADEDR--MMWLAMRGIFPDAVERFRLGWLPGENGKDCYHRDRGAW 184 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 A L+ P + G V R + Sbjct: 185 GLPPETNARGRKKS-------LWIPAGLVVPALTEDGAVRRLRIRRTDEARERFGAEMKY 237 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 ++ S+R + R + ++VE +D ++ A + + Sbjct: 238 VVV----------------PGSSMRPLLLRPEARAFVVVEAELDAMACVAAAMDAGLDVG 281 Query: 299 GTALTEYQLRL------LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL 352 A R + + + I++ D D P + + Sbjct: 282 AFAAGTNMGRPDAAAHAVLRRALCILVALDFDQPDEKGQRAGAKGMPFWARTYRTARRWP 341 Query: 353 LSRGEDPDSFIRC 365 + +G+DP R Sbjct: 342 VPKGKDPGDAFRE 354 >gi|218132802|ref|ZP_03461606.1| hypothetical protein BACPEC_00663 [Bacteroides pectinophilus ATCC 43243] gi|217992528|gb|EEC58531.1| hypothetical protein BACPEC_00663 [Bacteroides pectinophilus ATCC 43243] Length = 233 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 18/154 (11%) Query: 31 KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90 N ACCPFHD+K PS + ++CF C GD + F + L G S E+ Sbjct: 44 GRNG-----MACCPFHDDKHPSMKIDR---RFHCFGCQADGDVIDFTARLFGLSSKEAAL 95 Query: 91 RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150 +LA V ++ ++ + + + + +++ L + Sbjct: 96 KLAEDFSVSYDAKGHDPPRRRPVKRKISEELR-----YRQA-----EQKCFRVLCDYLHL 145 Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 E PD ++ + S + + Sbjct: 146 LEHWEQEYAPQNPDEAWNPLFVEALQKKSYTEYL 179 >gi|253580540|ref|ZP_04857805.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848270|gb|EES76235.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|295108930|emb|CBL22883.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162] Length = 234 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 53/149 (35%), Gaps = 12/149 (8%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH +K PS + ++CF C GD + F + L E+ ++LA + Sbjct: 29 MAVCPFHRDKNPSMKVDR---RFHCFGCQADGDVIDFTAHLYNLKPKEAAEKLARDFSIH 85 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 + ++++I+ L + A ++ D + E Sbjct: 86 YENMGHSPPQRKQIKRQLTQ---------EQRYLQAENRYFRALADYLHLLKQWKEECAP 136 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 D + L +K E +++ L Sbjct: 137 KQVEDVWHPLFMEALEKISETEYLLDTLL 165 >gi|218132427|ref|ZP_03461231.1| hypothetical protein BACPEC_00286 [Bacteroides pectinophilus ATCC 43243] gi|217992765|gb|EEC58767.1| hypothetical protein BACPEC_00286 [Bacteroides pectinophilus ATCC 43243] Length = 253 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%) Query: 11 LLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + I + Y + +R ACCPFH+++ PS N+ +++CF C Sbjct: 13 IKAAISVKQAAEHYGLKVNRNG--------MACCPFHNDRHPSLKLNED--YFFCFGCGA 62 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 KGD + ++ L S E+ Q+LA+ G+ K K Sbjct: 63 KGDVIDLVARLFNMSSYEAAQKLASDFGLDPKPPTAAAMAKPKR 106 >gi|295092259|emb|CBK78366.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 206 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%) Query: 16 PISNLIGQYVDWDRR----KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 + + V + +GD CCPFHD++ PS N ++YCF C V G Sbjct: 2 NLFETVKSAVTVKQAAEYYGCKVNRGDMI-CCPFHDDRHPSMKLNRD--YFYCFGCGVTG 58 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 D + F++ L G S E+ ++LA G+ Sbjct: 59 DVIDFVARLFGLSSYEAAKKLAYDFGIDPDKP 90 >gi|119952478|ref|YP_949958.1| TOPRIM domain-containing protein [Arthrobacter aurescens TC1] gi|119951608|gb|ABM10518.1| Toprim domain [Arthrobacter aurescens TC1] Length = 2109 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%) Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + L + A +F + + G D + +GYAP SL HL Sbjct: 1704 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1761 Query: 175 QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227 +G + +++ +AGL+ + + D FR+RL+ PIR ++ F GR Sbjct: 1762 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1821 Query: 228 GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 KYLN+ T +F KG+ L+ + A L + ++VEG MD Sbjct: 1822 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1871 Query: 283 VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334 L+ L G ++ +GTALT Q++LL RI + D D G +A KA Sbjct: 1872 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1931 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393 + L G DP + + G A I PL D + Sbjct: 1932 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1988 Query: 394 SFNTPDERAELEIHLKNCINH 414 ++ D R +L + Sbjct: 1989 HWSDTDVRQKLIHQTARILGS 2009 >gi|119952294|ref|YP_949965.1| TOPRIM domain-containing protein [Arthrobacter aurescens TC1] gi|119951424|gb|ABM10334.1| Toprim domain protein [Arthrobacter aurescens TC1] Length = 1708 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%) Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + L + A +F + + G D + +GYAP SL HL Sbjct: 1303 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1360 Query: 175 QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227 +G + +++ +AGL+ + + D FR+RL+ PIR ++ F GR Sbjct: 1361 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1420 Query: 228 GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 KYLN+ T +F KG+ L+ + A L + ++VEG MD Sbjct: 1421 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1470 Query: 283 VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334 L+ L G ++ +GTALT Q++LL RI + D D G +A KA Sbjct: 1471 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1530 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393 + L G DP + + G A I PL D + Sbjct: 1531 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1587 Query: 394 SFNTPDERAELEIHLKNCINH 414 ++ D R +L + Sbjct: 1588 HWSDTDVRQKLIHQTARILGS 1608 >gi|42558837|gb|AAS20177.1| TraA-like protein [Arthrobacter aurescens] Length = 1554 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 76/321 (23%), Positives = 120/321 (37%), Gaps = 36/321 (11%) Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + L + A +F + + G D + +GYAP SL HL Sbjct: 1149 ERIHELNKQALAYFESCYPRSWAPGYL--RERLGTDLTDYPAYSVGYAPGGGRSLLRHLT 1206 Query: 175 QKGFSEEKIIEAGLLIDGDNSAT---SYDRFRNRLIFPIRSSRG----QVIAFGGRTLSK 227 +G + +++ +AGL+ + + D FR+RL+ PIR ++ F GR Sbjct: 1207 DQGATLDELEQAGLISKRERNDGTSYYRDFFRDRLVMPIRDPHDPTGEAILGFVGRRNPT 1266 Query: 228 GES-----VKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 KYLN+ T +F KG+ L+ + A L + ++VEG MD Sbjct: 1267 KTDDDYAGPKYLNTRTTPIFTKGEALFGYTEARELLA----------GGALPVIVEGPMD 1316 Query: 283 VLS--LCQAGVQNVVSSLGTALTEYQLRLLWKL------SPRIVLCFDGDDPGLRAAYKA 334 L+ L G ++ +GTALT Q++LL RI + D D G +A KA Sbjct: 1317 ALAITLGSNGAAVGIAPMGTALTVNQIKLLRSHIDLVNGRDRIAVATDSDPAGWNSAQKA 1376 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR- 393 + L G DP + + G A I PL D + Sbjct: 1377 F---WHLTAADLDPTHLDLPDGLDPANLLETQGADAIAAAIENRSPLGDAMIDHLLRTAG 1433 Query: 394 SFNTPDERAELEIHLKNCINH 414 ++ D R +L + Sbjct: 1434 HWSDTDVRQKLIHQTARILGS 1454 >gi|255524775|ref|ZP_05391726.1| zinc finger CHC2-family protein [Clostridium carboxidivorans P7] gi|296185004|ref|ZP_06853415.1| CHC2 zinc finger domain-containing protein [Clostridium carboxidivorans P7] gi|255511548|gb|EET87837.1| zinc finger CHC2-family protein [Clostridium carboxidivorans P7] gi|296050786|gb|EFG90209.1| CHC2 zinc finger domain-containing protein [Clostridium carboxidivorans P7] Length = 203 Score = 84.6 bits (207), Expect = 5e-14, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 54/126 (42%), Gaps = 11/126 (8%) Query: 6 DFIKDLLIHIPISNLIGQYVD--WDR-RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ + ++ I + +Y + R CPFH EKT SF + + Sbjct: 2 QLVEQIKDNLDILTALQKYTTADLSKLRGKKGNI-----LCPFHHEKTGSFLVDTINNTW 56 Query: 63 YCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +CF C GD ++ + G S +S++ LA+ G L + K+ KK KI + Sbjct: 57 HCFGSCATGGDVITLYAFSNGISNKDSIKLLASDLG--LKQENKKLSKKVKIDFIKKKTE 114 Query: 122 EVATDF 127 + A +F Sbjct: 115 KEALNF 120 >gi|291517916|emb|CBK73137.1| DNA primase (bacterial type) [Butyrivibrio fibrisolvens 16/4] Length = 140 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 8/120 (6%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 L + + Y K CC FH++K PS N K ++YCFSC Sbjct: 7 LKQAVSLEEAASFY------GIFYDKRSKKCCCLFHNDKHPSMKLN--KEYFYCFSCGAH 58 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD ++ + + G S IES Q++ + K K + I + FH Sbjct: 59 GDVINLVQQIYGLSAIESAQKICNDFNLNGSTDTCKSPSIIKQRQQEIEHRKALERAFHQ 118 >gi|85057565|ref|YP_456481.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789670|gb|ABC65402.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] Length = 441 Score = 84.2 bits (206), Expect = 6e-14, Method: Composition-based stats. Identities = 85/440 (19%), Positives = 163/440 (37%), Gaps = 78/440 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57 MNY ++ IK + + P++ V + Y CP H + P+ H Sbjct: 1 MNY-QEKIKHIQTNFPMT------VLLKKLNIIPTNFNTKYRFPCPIHQGQNPTCCHLTS 53 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRL------------------------ 92 +C+ C D + + G +F +++++ Sbjct: 54 DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKNQEFKNLIQQQTSTPNISC 112 Query: 93 --------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH--- 141 P+ + K ++ ++ L D++H+ L R+ H Sbjct: 113 EPFKYQFHHNKINNPIDEKEINAT-KTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGL 171 Query: 142 -YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 Y +R + I+ FKLGYAP S + L + +++ K+IE G + D N Sbjct: 172 EYLTQKRKLTLETIKEFKLGYAPLSDKPLSFRLVNYCKKQNIDTTKLIEYGFIKDKTNQQ 231 Query: 197 T---SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNL 248 +D F +I PI + + F + + N +T FH Sbjct: 232 NKTYYHDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQPKYKSLNNFSQTPTFHFS--- 288 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQ 306 Y FF AL ++ + II+ EG+ DV+S Q ++NVV + L++ Q Sbjct: 289 YRFFEALPSIK----------QTKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSKSQ 338 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIR 364 + +L K + ++++ D D+ G + + + + I + +D D +R Sbjct: 339 IEILKKENIKVIIALDNDETGQKRSEALGEQLKEENIIYEIRRILPPYDKTCKDVDDLLR 398 Query: 365 CYGKTAFEKLIVESLPLVDM 384 +GK A++K ++ + Sbjct: 399 QFGKEAYQKCFLDPYITYEE 418 >gi|167771871|ref|ZP_02443924.1| hypothetical protein ANACOL_03244 [Anaerotruncus colihominis DSM 17241] gi|167665669|gb|EDS09799.1| hypothetical protein ANACOL_03244 [Anaerotruncus colihominis DSM 17241] Length = 209 Score = 84.2 bits (206), Expect = 6e-14, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 6/111 (5%) Query: 16 PISNLIGQYVDWDRRKT--NAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 I ++ + V+ Y A CPFH+++ PS + D YYCF+C GD Sbjct: 2 RIFEIVKENVNLREAAELYEIDVNRYGKALCPFHNDRHPSLYVADDH--YYCFACGEHGD 59 Query: 73 HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-QTDLIRLIE 122 + F+ L S ++ ++L A + + K +T+ +L+E Sbjct: 60 VIDFVGRLFQLSPYDAARKLMADFHLAPDKPPSAAAIQAKRIRTEAQQLME 110 >gi|207743819|ref|YP_002260211.1| dna primase protein (partial sequence c terminus) [Ralstonia solanacearum IPO1609] gi|206595219|emb|CAQ62146.1| dna primase protein (partial sequence c terminus) [Ralstonia solanacearum IPO1609] Length = 320 Score = 84.2 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 128/343 (37%), Gaps = 29/343 (8%) Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 N V++LGTA T ++ L + ++ FDGD G RAA +A++ L H+ V F Sbjct: 1 FANAVATLGTACTPVHVQKLLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKF 60 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L DPD+FIR G AF + ++PL L + +E+ P+ RA + K Sbjct: 61 LFLPPEHDPDTFIREEGTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKP 120 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ + LR + + + I G + R ++ R ++ Sbjct: 121 LLSAMPPGGLRLQIVRGLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTA 179 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFV 527 L E +L L+ +PA+ + EL + L L Sbjct: 180 L------------EQKVLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDA 226 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 +RL + + E L V D + E + Q+ LA Sbjct: 227 VGPEMHFGAFVERLGQTPYAEAFAGLRVAVLDDDIEL---EPATQEFDAAVQKMLA---- 279 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-EVHIQIH 629 L R+ + +++++ + +A+K + L E+ + Sbjct: 280 -EPLRRELDMLQRKM-EGGHASDADK--ERLRWLVSEISRRRR 318 >gi|302876362|ref|YP_003844995.1| Sigma 54 interacting domain-containing protein [Clostridium cellulovorans 743B] gi|302579219|gb|ADL53231.1| Sigma 54 interacting domain protein [Clostridium cellulovorans 743B] Length = 868 Score = 84.2 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVK 70 I + +LI + + CPFH EKTPS + +K + C+ C + Sbjct: 6 IDLKDLIE-----KETGERFNREGFT-KCPFHKEKTPSLSVKFFPDKNKQKFKCWGCEEQ 59 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 GD + F++ L + E+ + L G+ + ++++ + Sbjct: 60 GDAIDFITKLKNLGYKEAREYL----GMENIKTEKELQEDNIKK 99 >gi|295105017|emb|CBL02561.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] Length = 205 Score = 83.8 bits (205), Expect = 7e-14, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFHD++ PS N+ ++YCF C KGD + F++ LL S E+ QRLAA G+ P Sbjct: 31 CCPFHDDRHPSLKLNED--YFYCFGCGAKGDVIDFVARLLDLSAYEAAQRLAADFGLDRP 88 Query: 102 VVDPKIEKKEKIQ 114 KK + + Sbjct: 89 PSVVAQVKKYRPR 101 >gi|322374451|ref|ZP_08048965.1| DNA primase [Streptococcus sp. C300] gi|321279951|gb|EFX56990.1| DNA primase [Streptococcus sp. C300] Length = 250 Score = 83.8 bits (205), Expect = 8e-14, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 89/273 (32%), Gaps = 23/273 (8%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 DPD +++ L+ ++ + + + + + + E + I K Sbjct: 1 MDPDEYLQKNSAEDLAYLLTKTRISPIEFYIHQLKPENSDNLQAQIEFIEKIAPLIAKEK 60 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + D L + + + R ++ R ++++ P+ SL + Sbjct: 61 SITAQNSYIHILADNLPSFDYQQVEQIVNESRIVQRQERVKEEQPPA----AISLPVTRQ 116 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 EA LL + +P +L + + D +D E Q L+ L Sbjct: 117 LTAVMRAEAHLLYRMAENPVVLNDY-RLREDFFFDTPEFQILYELLSEQGE--------- 166 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + +++ E + ++ + + + LLS+ Sbjct: 167 ----IGSEELSHQTPEVENAWYHVLSLDLPAEMSPQELAE-----VEATRNRALLSKDNL 217 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 I+K++ + + G+ + + L ++ Sbjct: 218 RIKKKVQEASHVGDTDTALEELQRLISQKRRME 250 >gi|39939058|ref|NP_950824.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722167|dbj|BAD04657.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 441 Score = 83.8 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 93/429 (21%), Positives = 157/429 (36%), Gaps = 74/429 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSFHCNDS 58 MNY +D IK + H P+S V + Y CP H P+ S Sbjct: 1 MNY-QDKIKHIQTHFPMS------VLLKKLNIIPSNFNPKYRFPCPLHQGNNPTCCHFTS 53 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR------------LAAI---------- 95 +C+ C D + + SF E++QR L+ Sbjct: 54 TNKIHCWKCVRDYDIIDVYMTIRQIKSFYEAIQRIEGFMNSFEFKTLSQQEKEITKIITN 113 Query: 96 -----AGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFHHSLKNARDKRLH----Y 142 P ++ + L + L D++H+ L + R+ Y Sbjct: 114 PFPQPYHPMKPKQPVDEQEINIKKKQLFKDISPLFNQIRDYYHYLLISNRNNESQPGLTY 173 Query: 143 YLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT- 197 +R + I+ F+LGYAP S + L + ++K K++E G + + N Sbjct: 174 LTQKRKLTLETIKEFQLGYAPLSDKPLSFRLVNYCQKKNIDTTKLVEYGFIKEKTNQQNK 233 Query: 198 --SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLYN 250 +D F +I PI + Q F + + N +T FH Y Sbjct: 234 KYYHDTFHGSIIIPIENGYHQTFHFYQNHFREVSYFQPKYQALTNFSQTPTFHFS---YR 290 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308 FF AL Y++ + II+ EG+ DV+S Q ++NVV + L++ QL Sbjct: 291 FFEALPYIK----------QTKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSQSQLE 340 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAID--LVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 +L K ++++ D D+ G + + + L + +D D +R Y Sbjct: 341 ILKKEKIKVIIALDNDETGRKRSEALGEQLKETNILYEIRHILPPYNQTCKDVDDLLRQY 400 Query: 367 GKTAFEKLI 375 GK A++K Sbjct: 401 GKEAYQKCF 409 >gi|293400201|ref|ZP_06644347.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306601|gb|EFE47844.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 209 Score = 83.8 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH+++ PS + D YYCF+C GD + F + L G E+ QRLAA + Sbjct: 29 MALCPFHNDRHPSLYVADDH--YYCFACGEHGDVIDFAARLFGLPLYEAAQRLAADFHLT 86 Query: 100 LPVVDPKIEKKEKI 113 K Sbjct: 87 PDKPPSAAALHAKR 100 >gi|325954494|ref|YP_004238154.1| TOPRIM domain-containing protein [Weeksella virosa DSM 16922] gi|323437112|gb|ADX67576.1| TOPRIM domain-containing protein [Weeksella virosa DSM 16922] Length = 381 Score = 83.8 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 53/368 (14%), Positives = 113/368 (30%), Gaps = 50/368 (13%) Query: 33 NAVKGDYWAC---------CPFHDEKTPSFHCNDSKGFYYCFS--C---HVKGDHLSFLS 78 N + Y+ CPFH++KTPS YCFS C D + F+ Sbjct: 37 NGKRTHYYGLKTDKQSRISCPFHEDKTPSMQVYYKTQTAYCFSSNCKTNGKSMDVIDFIM 96 Query: 79 ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDK 138 + +++ + I G P + + + + L + + + + + Sbjct: 97 HKENSTKAQAINKAKEIVGYQKPDSKERYQPELTREQFLGNMYQ-----YFKNAVSNSKP 151 Query: 139 RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198 Y + G + Q I + L G+ + Sbjct: 152 AKDYLQQRNLDFKKTEIGYNAGQFHHGARKDENVIAQCLEYGLLIDKNILGRTGEKAYGV 211 Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYL 258 + ++ + F +++ +V R+ LN E+ F+ Sbjct: 212 FGKW--CICFALKNKENEVTGLYFRS--------TLNDKESKHFYLKN------------ 249 Query: 259 QKSIRKDVRRNSSSFIILVEGYMDVLSL-----CQAGVQNVVSSLGTALTEYQLRLLW-- 311 ++ + + ++ +IL E +D SL + LTE + + Sbjct: 250 RQGLYPNYPDKNTKKLILTESIIDGASLLQIKEIADNYSVLACYGTNGLTEEHQQAIKDL 309 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 I+ FD D G A K ++ + +D + ++ + ++ F Sbjct: 310 PQLEEIIFFFDNDTAGKEAVKKYGAMLKAEYPKLKLTTAEPI--NKDINETLQGHDESIF 367 Query: 372 EKLIVESL 379 +L+ Sbjct: 368 IELLNNRT 375 >gi|302873087|ref|YP_003841720.1| Sigma 54 interacting domain-containing protein [Clostridium cellulovorans 743B] gi|307688755|ref|ZP_07631201.1| Sigma 54 interacting domain-containing protein [Clostridium cellulovorans 743B] gi|302575944|gb|ADL49956.1| Sigma 54 interacting domain protein [Clostridium cellulovorans 743B] Length = 852 Score = 83.8 bits (205), Expect = 9e-14, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Query: 42 CCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 CCPFH EKTPS + +K + C+ C +GD L F+ + + + L G Sbjct: 27 CCPFHKEKTPSLSVKFFPDRNKQRFMCWGCTEQGDALDFIMKYRNLDYKAARKYL----G 82 Query: 98 VPLPVVDPKIEKK 110 + + +++++ Sbjct: 83 MENKKSENQLQEE 95 >gi|325662742|ref|ZP_08151336.1| hypothetical protein HMPREF0490_02076 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470979|gb|EGC74207.1| hypothetical protein HMPREF0490_02076 [Lachnospiraceae bacterium 4_1_37FAA] Length = 217 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 7/90 (7%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFHD++ PS KGF CF+C KGD ++F++ +E+ ++LA +P+ Sbjct: 31 CCPFHDDRHPSMKV--DKGFC-CFACGAKGDVITFVADFFHIVPLEAAKKLAEDFRIPIF 87 Query: 102 VVDPK----IEKKEKIQTDLIRLIEVATDF 127 K +KKEK + L + + ++ Sbjct: 88 TDSSKKRNTSKKKEKPKRTLYQTEKKFEEW 117 >gi|320104081|ref|YP_004179672.1| hypothetical protein Isop_2552 [Isosphaera pallida ATCC 43644] gi|319751363|gb|ADV63123.1| hypothetical protein Isop_2552 [Isosphaera pallida ATCC 43644] Length = 631 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 55/407 (13%), Positives = 119/407 (29%), Gaps = 52/407 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD---EKTPSFHCNDSKGF 61 R+ +++ + ++ + + R + CP +TP + Sbjct: 10 RERLEEWKTRLD-CRVVARSLGLAGRGSRWF-------CPSCQPGGGRTPDLAAEAER-- 59 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV----------------DP 105 + CF C GD ++ + G F ++V+ L PL Sbjct: 60 FRCFKCGAGGDVIALVRLATGLDFAQAVEWLEQRFAAPLERERNGPKGTRSLTRPTIRTN 119 Query: 106 KIEKKEKIQTDLIRLIEVAT-----DFFHHSLKNA-RDKRLHYYLDERGIDSHAIEMFKL 159 + +E+ + + ++++ + F ++ +L ER I A ++ Sbjct: 120 RPSLRERARAEASNAVDLSARAMVFERFRAGCRDPRPGDPAWTFLVERSIHPEAFRRLRV 179 Query: 160 GYAPDSRY-SLREHLRQKGFSEEKIIEAGLLIDGDNS--------ATSYDRFRNRLIFPI 210 G+ + + + + E +I AGL G Y ++ Sbjct: 180 GWLANGGELADLMARLTREWDEPTLIRAGLWRLGRTRTPRTGGPVFRPYGHLDRPILVLP 239 Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 G+++ R L + P ++ + A +R+ Sbjct: 240 YPWNGRLVHLKVRALIDSSEAEAQGIP--RFLSAAGSIPCPYHA----DALVREPTEETR 293 Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330 + + EG D L+ G + + + + + + L DGD+ G R Sbjct: 294 RGTLWICEGETDTLAALSRGWRAIGVPGWSGFKAGWIARIKGTFRAVRLAMDGDEAGARG 353 Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 A + G D +R A L+ Sbjct: 354 AADIAAKFRR--AGAPAPRLLPPRPGHDLGDRLRAPNAEALRALLDR 398 >gi|237749745|ref|ZP_04580225.1| predicted protein [Helicobacter bilis ATCC 43879] gi|229374674|gb|EEO25065.1| predicted protein [Helicobacter bilis ATCC 43879] Length = 60 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 26/52 (50%) Query: 45 FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 FH E SF N K +YCF C GD + + +FI+++ L+ +A Sbjct: 9 FHVENKASFTINPQKNLWYCFGCGNGGDTIKLYMKIKDVNFIKAIDELSRLA 60 >gi|160914404|ref|ZP_02076619.1| hypothetical protein EUBDOL_00408 [Eubacterium dolichum DSM 3991] gi|158433562|gb|EDP11851.1| hypothetical protein EUBDOL_00408 [Eubacterium dolichum DSM 3991] Length = 179 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 16/94 (17%) Query: 16 PISNLIGQYVDWDRR--------KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + ++ Q V + N ACCPFH +KTPS + Y+CF C Sbjct: 2 NVFEVVKQSVTTRQAAEHYGIHAGRNG-----MACCPFHHDKTPSMKLDR---RYHCFGC 53 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F +AL G E+ +LA G+ Sbjct: 54 GADGDVIDFAAALYGLGKKEAAVQLAQDFGISYE 87 >gi|291530655|emb|CBK96240.1| DNA primase (bacterial type) [Eubacterium siraeum 70/3] Length = 227 Score = 83.0 bits (203), Expect = 1e-13, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 5/95 (5%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + ++CF C D + F++AL G E+ +LA+ G+ Sbjct: 42 MACCPFHNDKTPSMKLDK---RFHCFGCGADADVIDFVAALYGLGKKEAAAQLASDFGLA 98 Query: 100 LPVVDP--KIEKKEKIQTDLIRLIEVATDFFHHSL 132 P + K + Q A L Sbjct: 99 YEDWKPPGRARKPKPRQKSPEEQFREAKAHCFRVL 133 >gi|261414853|ref|YP_003248536.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371309|gb|ACX74054.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302325858|gb|ADL25059.1| putative DNA primase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 627 Score = 83.0 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 78/535 (14%), Positives = 164/535 (30%), Gaps = 73/535 (13%) Query: 25 VDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGF--YYCFSCHVKGDHLSFLSA-- 79 + R N ACCPFH E+T S D+ G+ Y C C +GD + FL Sbjct: 22 IPLSRWGRNL-----IACCPFHAPEET-SLFFYDALGYWRYRCLQCGAEGDLVDFLMKSR 75 Query: 80 LLGCS----FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 G E+ + L A+ + D + +++ + +++E + H Sbjct: 76 FNGVDEQTARSEAFEFLGALDKDLVNNQDSEHPWVKEVGGEKSKVLECFVRYCH--WAAC 133 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + +L+ RG +++ LGY + G +I ++ + Sbjct: 134 KSPSSAKFLEARGWSIGQAQLYGLGYYSGDPEPFISYCMLSGIERHQISFYLDNLEAYHE 193 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 + P R+S+G + + GR + E + + +N Sbjct: 194 PR--------ITIPARNSKGFIHSVYGRLIDDNEKSHTYITYASG---PTVIPFNI---- 238 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 + S I+V+G+ D L+ AG+ VVS++ L L L Sbjct: 239 ------------QADSENPIIVQGFFDALTADLAGIPGVVSTMFQELNVNHLYKLKACGA 286 Query: 316 R---IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-------PDSFIRC 365 ++L + D + + + + + D D I Sbjct: 287 ESFTVILRREEDRRNQELKIQKYLKLAEQMHMSLKSIVLPKDESVDTFVRKNGADQLIDL 346 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK------ 419 T + + ++ K + PD+ ++ + D Sbjct: 347 IANTEVDTIHSHRRSMLLQDIKENFDTAMACPPDQSVGYKLSTFPKLTKEIDGVQSGCFF 406 Query: 420 -------LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 L+ + ++ L + + Y ++ + ++ Sbjct: 407 VSSQPFGLKTFLLSSLTLDLIESNPNLKVIYVAYETPRRQIFDRFVSMLIGESILNVRKQ 466 Query: 473 KGKLSKKPSLRE--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + E L+ + N+ E + ++ + + N+ L+ L L Sbjct: 467 NADNEINKKITEATRDLMAYVRNN---RLEIWDDMPSLDF-NDLLKTLSQELKDH 517 >gi|148257831|ref|YP_001242416.1| putative DNA primase [Bradyrhizobium sp. BTAi1] gi|146410004|gb|ABQ38510.1| putative DNA primase [Bradyrhizobium sp. BTAi1] Length = 437 Score = 83.0 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 53/176 (30%), Gaps = 58/176 (32%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP---S---FHCN 56 P + L P+ + G++V R Y CP E P S F CN Sbjct: 18 IPDHELLALKERNPVHEIAGRWVKLRRNGRKG----YIGPCPMCSE-NPQGRSATKFECN 72 Query: 57 DSKGFYYCFS-CHVKGDHLSFLSALLGCSFIESVQR------------LAAIAGV----- 98 K + C C GD + + G F +++R LA +AG+ Sbjct: 73 SVK--WVCAGQCQDGGDVIKLVQKREGVDFRAAIERLGGVRDEKPTPALARMAGLRAYQA 130 Query: 99 -----PLP----------------------VVDPKIEKKEKIQTDLIRLIEVATDF 127 +P D ++ +E+ + L + + + Sbjct: 131 GEPLGEVPAPFGDDPDLRMAWVRGWGDGRKRADYEVFARERERKRLYDFWQAGSRW 186 >gi|291556151|emb|CBL33268.1| DNA primase (bacterial type) [Eubacterium siraeum V10Sc8a] Length = 212 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 9/105 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + I + Y V + ACCPFH+++ PS N+ +++CF C Sbjct: 11 ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 61 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 KGD + ++ L S E+ Q+LAA G+ K K Sbjct: 62 AKGDVIDLVARLFDLSSYEAAQKLAADFGLDPKPPTAAAMVKPKR 106 >gi|295115815|emb|CBL36662.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1] Length = 186 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L G + E+ +LA V Sbjct: 1 MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKEAALKLAEDFSVS 57 Query: 100 LPVVDPKIEKKEKIQTDLIR 119 ++ ++ + Sbjct: 58 FDAKGHDPPRRRPVKRKISE 77 >gi|257879418|ref|ZP_05659071.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257813646|gb|EEV42404.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] Length = 214 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 24/113 (21%) Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89 N ACCPFH +KTPS + Y+CF C GD + F +AL G E+ Sbjct: 24 AGRNG-----MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAA 75 Query: 90 QRLAAIAGVPLP-------------VVDPKIEKKEKIQTDLIRLIEVATDFFH 129 +LA G+ E+ ++ + R++ D+FH Sbjct: 76 VQLAQDFGLSYEDWKPPGKAKKPKPRQKSPEEQFQEAKNRCFRIL---ADYFH 125 >gi|218673939|ref|ZP_03523608.1| DNA primase [Rhizobium etli GR56] Length = 48 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 25/48 (52%), Positives = 34/48 (70%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE 48 M + F+ ++ +PISN+I + V WD+RKTN +GDYWACCPFH E Sbjct: 1 MRFSNTFLDEIRDRVPISNVIARRVSWDKRKTNVSRGDYWACCPFHGE 48 >gi|52697314|gb|AAU86394.1| primase [Shigella boydii] Length = 169 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|85057458|ref|YP_456374.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789563|gb|ABC65295.1| DNA primase [Aster yellows witches'-broom phytoplasma AYWB] Length = 441 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 88/440 (20%), Positives = 166/440 (37%), Gaps = 78/440 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVK--GDYWACCPFHDEKTPSF-HCND 57 MN+ ++ IK++ I+ P+S V + K Y CP H + P+ H Sbjct: 1 MNF-QEKIKNIQINFPMS------VLLKKLNIIPPKFNPKYRFPCPIHQGQNPTCCHLTS 53 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRL------------------------ 92 +C+ C D + + G +F +++++ Sbjct: 54 DNKI-HCWKCCKDYDIIDVYMEIRGIKTFNNALEKINNFMKTQEFKNLIQQQTSTPNISY 112 Query: 93 --------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH--- 141 P+ + K ++ ++ L D++H+ L R+ H Sbjct: 113 EPFKYQYHHNKINNPIDEKEINAT-KTQLFKEISPLFNQIRDYYHYLLTTNRNNESHLGL 171 Query: 142 -YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 Y +R + I+ FKLGYAP S + L + +++ K+IE G + D N Sbjct: 172 EYLTQKRKLTIETIKEFKLGYAPLSDKPLSFRLLNYCKKQNIDTIKLIEYGFIKDKTNQQ 231 Query: 197 T---SYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNL 248 +D F +I PI + + F + + N +T FH Sbjct: 232 NKTYYHDTFHGSIIIPIENGYNKTFHFYQNNFREVSYFQPKYKSLNNFSQTPTFHFS--- 288 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQ 306 Y FF AL Y++ II+ EG+ DV+S Q ++NVV + L++ Q Sbjct: 289 YRFFEALPYIK----------QMKTIIIHEGFFDVISCWQNNIKNVVGLICVTQLLSKSQ 338 Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIR 364 + +L K + ++++ D D+ G + + + + I + +D D +R Sbjct: 339 IEILKKENIKVIIALDNDETGQKRSEALGEQLKEENIIYEIRRILPPYDKTCKDVDDLLR 398 Query: 365 CYGKTAFEKLIVESLPLVDM 384 +GK A++K ++ + Sbjct: 399 QFGKEAYQKCFLDPYITYEE 418 >gi|52697312|gb|AAU86393.1| primase [Shigella boydii] Length = 168 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|160939408|ref|ZP_02086758.1| hypothetical protein CLOBOL_04301 [Clostridium bolteae ATCC BAA-613] gi|158437618|gb|EDP15380.1| hypothetical protein CLOBOL_04301 [Clostridium bolteae ATCC BAA-613] Length = 206 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 CPFH+++ PS N+ ++YCF C GD + F++ L G + E+ Q+LA G+ Sbjct: 29 MCSCPFHEDQHPSMKLNER--YFYCFGCGATGDVIDFVARLFGLNSYEAAQKLAQDFGID 86 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEV 123 P P K + L++ Sbjct: 87 -PDKPPAAIALPKPERPLLKAYRQ 109 >gi|52697298|gb|AAU86386.1| primase [Shigella boydii] Length = 166 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|52697326|gb|AAU86400.1| primase [Shigella dysenteriae] Length = 167 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|283796097|ref|ZP_06345250.1| DNA primase [Clostridium sp. M62/1] gi|291076310|gb|EFE13674.1| DNA primase [Clostridium sp. M62/1] Length = 217 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 13/120 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M F + + +P Y V + ACCPFHD+K PS + Sbjct: 1 MRKSNVF-EAVKQSVPTRQAAEYYGVQIGKNG--------MACCPFHDDKHPSMKVDR-- 49 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 ++CF C GD + F + L S E+ +LA V ++ ++ + Sbjct: 50 -RFHCFGCQADGDVIDFTARLFSLSSKEAALKLAEDFSVRYDAKGHDPPRRRPVKRKISE 108 >gi|160944095|ref|ZP_02091325.1| hypothetical protein FAEPRAM212_01597 [Faecalibacterium prausnitzii M21/2] gi|158444771|gb|EDP21775.1| hypothetical protein FAEPRAM212_01597 [Faecalibacterium prausnitzii M21/2] Length = 864 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 71/557 (12%), Positives = 155/557 (27%), Gaps = 42/557 (7%) Query: 13 IHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 + I L+ +Y + ++ + CPFHD++ PSF + G + CF+C Sbjct: 7 DKVNIDELVNYKEEYTKFVQKP-EFKHDRMVSLCPFHDDRKPSFSVDLKTGKFVCFACGK 65 Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 G+++SF + L G S ++ +++ GV KKE + + + A + Sbjct: 66 AGNYVSFRAELDGTSNADAYKKILREHGVD-------ETKKEPAKPKSYTVEDYAAE--- 115 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 L + ++ D R+ + F ++ Sbjct: 116 KKLPAEWLHMVCSLESKQEQDGTPYVKIPYFNIESKVQVTRKRMGNHSFKWGYGSAGKMI 175 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE-TILFHKGKNL 248 G + ++ S + G L + + PE + L Sbjct: 176 PYGLWRKEGMEVAGYTILVEGESDSQTLWFLGYPALGIPGASTFK--PEWVEDLKSIETL 233 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLR 308 Y + + + +G + S AG ++ + + Sbjct: 234 YIH---KEPDRGGQTFFEKVTEALKNAGYKGEVKTFSCADAGEKDPSALYIKLGKDAAQD 290 Query: 309 LLWKLSPRI-VLCFDGDDPGLRAAYKAIDLVLCHLIPGNR--VNFVLLSRGEDPDSFIRC 365 L +L V+ D + AA + L + D + Sbjct: 291 KLDELLENAKVVDLDHLADDVPAAIEGAPKNLRQPPGWQYGEFGISRIDEKTDQLVCVCR 350 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 ++L + + + + R+ + K + + Sbjct: 351 TPIILTKRLKRTDTGEEKIEVAWKRDGEWHDAIFPRSMIFQSRSITALADKGCTVTSENA 410 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP----------SQRLMQSSLVKGK 475 + + L L Q+ I + R + P + + + K Sbjct: 411 KQVVRFLGALEQENIDALGLQESTSTFGWQSRHRFLPGHAPDMVLDIEPSMTRWATAYLK 470 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--L 533 + RE T+ H + +++ + + L + +F + Sbjct: 471 NGTLDAWRE-----TMTQHRN--RYRFRFILASSFAAPLLAIIKQRIFFVYNWGGSRGGK 523 Query: 534 PEEIHQRLCERGFGELL 550 + L G E L Sbjct: 524 TAALKAALSAWGDPERL 540 >gi|52697284|gb|AAU86379.1| primase [Escherichia coli] gi|52697320|gb|AAU86397.1| primase [Shigella dysenteriae] gi|52697324|gb|AAU86399.1| primase [Shigella dysenteriae] gi|52697332|gb|AAU86403.1| primase [Shigella dysenteriae] gi|52697364|gb|AAU86419.1| primase [Shigella flexneri 2a] Length = 169 Score = 82.2 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|52697296|gb|AAU86385.1| primase [Shigella flexneri] gi|52697334|gb|AAU86404.1| primase [Shigella dysenteriae] gi|52697346|gb|AAU86410.1| primase [Escherichia coli] gi|52697768|gb|AAU86621.1| primase [Escherichia coli] Length = 168 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|210613345|ref|ZP_03289665.1| hypothetical protein CLONEX_01872 [Clostridium nexile DSM 1787] gi|210151187|gb|EEA82195.1| hypothetical protein CLONEX_01872 [Clostridium nexile DSM 1787] Length = 228 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD++ PS + ++CF+C GD + F S L G S E+ +LA + Sbjct: 43 MACCPFHDDRHPSMKVDR---RFHCFACQADGDVIDFTSRLFGLSSKEAALKLAEDFSIS 99 Query: 100 LPVVDPKIEKKEKIQTDLIRLIE 122 +K I+ + + Sbjct: 100 FDRKGHDPPQKRVIKRKISEEMR 122 >gi|291562405|emb|CBL41221.1| DNA primase (bacterial type) [butyrate-producing bacterium SS3/4] Length = 206 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + I + Y V + ACCPFH+++ PS N+ +++CF C Sbjct: 5 ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 KGD + ++ L S E+ Q+LA G+ K K Sbjct: 56 AKGDVIDLVARLFNLSSYEAAQKLALDFGLDPKPPTAAAMVKPKR 100 >gi|310825843|ref|YP_003958200.1| hypothetical protein ELI_0217 [Eubacterium limosum KIST612] gi|308737577|gb|ADO35237.1| hypothetical protein ELI_0217 [Eubacterium limosum KIST612] Length = 228 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD++ PS + ++CF+C GD + F S L G S E+ +LA + Sbjct: 43 MACCPFHDDRHPSMKVDR---RFHCFACQADGDVIDFTSRLFGLSSKEAALKLAEDFSIS 99 Query: 100 LPVVDPKIEKKEKIQTDLIRLIE 122 +K I+ + + Sbjct: 100 FDRKGHDPPQKRVIKRKISEEMR 122 >gi|224024339|ref|ZP_03642705.1| hypothetical protein BACCOPRO_01063 [Bacteroides coprophilus DSM 18228] gi|224017561|gb|EEF75573.1| hypothetical protein BACCOPRO_01063 [Bacteroides coprophilus DSM 18228] Length = 292 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 9/100 (9%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + IP+++ + + + R + W P+ +E+TPSF N K +Y F Sbjct: 6 IDAMRQ-IPLADFLARLGHEPIRRSGN-----ELWYRAPYRNERTPSFRVNVKKQLWYDF 59 Query: 66 SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVD 104 GD + +G F+E V+ +A A +P+PV + Sbjct: 60 GTGRGGDIFTLAGEFIGSGDFMEQVKFIAETANIPMPVPE 99 >gi|238923195|ref|YP_002936710.1| DNA primase [Eubacterium rectale ATCC 33656] gi|238925053|ref|YP_002938569.1| DNA primase [Eubacterium rectale ATCC 33656] gi|238874869|gb|ACR74576.1| DNA primase [Eubacterium rectale ATCC 33656] gi|238876728|gb|ACR76435.1| DNA primase [Eubacterium rectale ATCC 33656] Length = 214 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 8/72 (11%) Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89 N ACCPFH +KTPS + Y+CF C GD + F +AL G E+ Sbjct: 24 AGRNG-----MACCPFHHDKTPSMKLD---QRYHCFGCGADGDVIDFAAALYGLGKKEAA 75 Query: 90 QRLAAIAGVPLP 101 +LA G+ Sbjct: 76 VQLAQDFGLSYE 87 >gi|223985976|ref|ZP_03636008.1| hypothetical protein HOLDEFILI_03314 [Holdemania filiformis DSM 12042] gi|223962032|gb|EEF66512.1| hypothetical protein HOLDEFILI_03314 [Holdemania filiformis DSM 12042] Length = 222 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%) Query: 31 KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90 N ACCPFH++KTPS + Y+CF C GD + F +AL G E+ Sbjct: 35 GRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFTAALYGLGKKEAAV 86 Query: 91 RLAAIAGVPLP 101 +LA G+ Sbjct: 87 QLAQDFGLSYE 97 >gi|323693688|ref|ZP_08107887.1| DNA primase [Clostridium symbiosum WAL-14673] gi|323502302|gb|EGB18165.1| DNA primase [Clostridium symbiosum WAL-14673] Length = 214 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 R N ACCPFH++KTPS + Y+CF C GD + F +AL G E+ Sbjct: 23 RVGRNG-----MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEA 74 Query: 89 VQRLAAIAGVPLP 101 +LA G+ Sbjct: 75 AVQLAQDFGLSYE 87 >gi|301309569|ref|ZP_07215511.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] gi|300832658|gb|EFK63286.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] Length = 292 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 9/100 (9%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + IP+++ + + + R + W P+ +E+TPSF N +K +Y F Sbjct: 6 IDAMRH-IPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLSFLSALLG-CSFIESVQRLAAIAGVPLPVVD 104 GD + +G F+E V+ +A A +P+PV + Sbjct: 60 GTGKGGDIFTLAGEFIGSNDFMEQVKFIAETANMPMPVPE 99 >gi|52697304|gb|AAU86389.1| primase [Shigella boydii] Length = 163 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697300|gb|AAU86387.1| primase [Shigella sonnei] gi|52697338|gb|AAU86406.1| primase [Escherichia coli] Length = 168 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|149003982|ref|ZP_01828790.1| DNA primase [Streptococcus pneumoniae SP14-BS69] gi|147758041|gb|EDK65047.1| DNA primase [Streptococcus pneumoniae SP14-BS69] Length = 187 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 17/178 (9%) Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFG 253 D F NR++FP+ + +G+VIAF GR K +S KY NS T +F+K LY+ Sbjct: 22 NQFVDTFHNRIMFPLTNDQGKVIAFSGRIWQKTDSQTSKYKNSRSTAIFNKSYELYHMDR 81 Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL 313 A K +S I L+EG+MDV++ +AG++N V+S+GTAL+ + L +L Sbjct: 82 AKKSSGK----------TSEIYLMEGFMDVIAAYRAGIENAVASMGTALSREHVEHLKRL 131 Query: 314 SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 + ++VL +DGD G A KA+D I V V + DPD +++ + + Sbjct: 132 TKKLVLVYDGDKAGQAAILKALD-----EIGDMPVQIVSMPDNLDPDEYLQKMVQKTW 184 >gi|52697354|gb|AAU86414.1| primase [Escherichia coli] gi|52697766|gb|AAU86620.1| primase [Escherichia coli] Length = 167 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|52697306|gb|AAU86390.1| primase [Shigella boydii] gi|52697348|gb|AAU86411.1| primase [Escherichia coli] gi|52697380|gb|AAU86427.1| primase [Escherichia coli] gi|52697776|gb|AAU86625.1| primase [Escherichia coli] gi|52697780|gb|AAU86627.1| primase [Escherichia coli] Length = 167 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697292|gb|AAU86383.1| primase [Shigella flexneri] gi|52697310|gb|AAU86392.1| primase [Shigella sonnei] gi|52697330|gb|AAU86402.1| primase [Shigella flexneri 2a] gi|52697350|gb|AAU86412.1| primase [Escherichia coli] gi|52697762|gb|AAU86618.1| primase [Escherichia coli] gi|52697764|gb|AAU86619.1| primase [Escherichia coli] Length = 166 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|52697318|gb|AAU86396.1| primase [Shigella dysenteriae] gi|52697368|gb|AAU86421.1| primase [Shigella flexneri] gi|52697370|gb|AAU86422.1| primase [Shigella flexneri] gi|52697782|gb|AAU86628.1| primase [Escherichia coli] Length = 166 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697240|gb|AAU86357.1| primase [Escherichia albertii] gi|52697242|gb|AAU86358.1| primase [Shigella boydii] gi|52697244|gb|AAU86359.1| primase [Shigella boydii] Length = 169 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163 >gi|52697302|gb|AAU86388.1| primase [Shigella sonnei] gi|52697772|gb|AAU86623.1| primase [Escherichia coli] gi|52697774|gb|AAU86624.1| primase [Escherichia coli] gi|52697790|gb|AAU86632.1| primase [Escherichia coli] Length = 165 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|331088121|ref|ZP_08337042.1| hypothetical protein HMPREF1025_00625 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409077|gb|EGG88536.1| hypothetical protein HMPREF1025_00625 [Lachnospiraceae bacterium 3_1_46FAA] Length = 187 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L G S E+ +LA V Sbjct: 1 MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLSGKEAALKLAEDFSVR 57 Query: 100 LPVVDPKIEKKEKIQTDLIR 119 ++ ++ + Sbjct: 58 YDAKGHDPPRRRPVKRKISE 77 >gi|160934589|ref|ZP_02081975.1| hypothetical protein CLOLEP_03462 [Clostridium leptum DSM 753] gi|156866042|gb|EDO59414.1| hypothetical protein CLOLEP_03462 [Clostridium leptum DSM 753] Length = 214 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 19/103 (18%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 29 MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 85 Query: 100 LP-------------VVDPKIEKKEKIQTDLIRLIEVATDFFH 129 E+ ++ + R++ D+FH Sbjct: 86 YEDWKPPGKAKKPKPRQKSPEEQFQEAKNRCFRIL---ADYFH 125 >gi|332661927|ref|YP_004451396.1| hypothetical protein Halhy_6708 [Haliscomenobacter hydrossis DSM 1100] gi|332337424|gb|AEE54523.1| hypothetical protein Halhy_6708 [Haliscomenobacter hydrossis DSM 1100] Length = 348 Score = 81.9 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M P +IP+ +L+ + + + D W PF EKTPSFH + + Sbjct: 40 MTVPEA------KNIPLVDLLAR-LGHQPAEVRQGGNDVWYLSPFRQEKTPSFHIHQGRN 92 Query: 61 FYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAG 97 +Y F G+ + F+ CSF ++ L + G Sbjct: 93 VWYDFGDGSSEGGNLIDFVMRQQQCSFARAMAFLEKLYG 131 >gi|291535048|emb|CBL08160.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1] Length = 234 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 13/145 (8%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L G S E+ +LA V Sbjct: 49 MACCPFHDDKHPSMKIDR---RFHCFGCQADGDVIDFTARLFGLSNKEAALKLAEDFSVR 105 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 ++ ++ + + + + +++ L + E Sbjct: 106 YDAKGHDPPRRRPVKRKISEELR-----YRQA-----EQKCFRVLCDYLHLLEQWEQEYS 155 Query: 160 GYAPDSRYSLREHLRQKGFSEEKII 184 P+ ++ + + + Sbjct: 156 PQTPEEAWNPLFVEALQKKPYTEYL 180 >gi|52697282|gb|AAU86378.1| primase [Escherichia coli] gi|52697786|gb|AAU86630.1| primase [Escherichia coli] Length = 163 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|55420478|gb|AAV52093.1| putative TraA conjugation protein [Nocardioides sp. JS614] Length = 1818 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 124/318 (38%), Gaps = 30/318 (9%) Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + +I + E+ FF ++ + GID E F+ G AP +L +HL Sbjct: 1516 RERMIEINEITQTFFESRFTDSWGRDYL--TGRFGIDLAGHEHFRPGQAPAGWTNLVDHL 1573 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------ 227 R +G S +++ G+ ++ DRFR+R++FP+ G+V+ F GR + Sbjct: 1574 RHRGVSGAEMLATGVAT-TASTGRLIDRFRDRVMFPVVH-NGEVLGFVGRRRPELTDADQ 1631 Query: 228 ---GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 KYLN+ +T LFHKG LY D + ++VEG MD + Sbjct: 1632 ANGRGGPKYLNTADTPLFHKGAQLYG------------VVDELLAEGAVPVIVEGPMDAI 1679 Query: 285 S--LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 + L A V+ LGT+LT+ Q L + ++ D D G AA + ++ H Sbjct: 1680 AVTLASAARYVGVAPLGTSLTDEQASQLGGIGRDPIVATDADLAGEVAAERDFWMLTPH- 1738 Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 G + G DP + G A + L D L +N + A Sbjct: 1739 --GLDPGYARFPEGLDPADLLAQRGPAALTASLASGQTLGDQLLSERLDNLAPEQARVAA 1796 Query: 403 ELEIHLKNCINHIKDQKL 420 + + + Sbjct: 1797 MRVLAARPSRAWRRAPTW 1814 >gi|52697784|gb|AAU86629.1| primase [Escherichia coli] Length = 162 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697770|gb|AAU86622.1| primase [Escherichia coli] Length = 164 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|296450780|ref|ZP_06892532.1| DNA primase [Clostridium difficile NAP08] gi|296260402|gb|EFH07245.1| DNA primase [Clostridium difficile NAP08] Length = 177 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 17/101 (16%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH++K PS + ++CF+C GD + F+S L G E+ +LA G+ Sbjct: 1 MAVCPFHNDKNPSMKVDK---RFHCFACQADGDVIDFVSRLCGLPCKEAAMKLADDFGIS 57 Query: 100 ----------LPVVDPKIEK-KEKIQTDLIRLIEVATDFFH 129 + +P E+ +K + R++ TD+FH Sbjct: 58 YDSRHKPTVRPHIREPTAEQLYQKEEARCYRVL---TDYFH 95 >gi|52697236|gb|AAU86355.1| primase [Escherichia albertii] gi|52697238|gb|AAU86356.1| primase [Shigella boydii] gi|52697246|gb|AAU86360.1| primase [Escherichia albertii] gi|52697248|gb|AAU86361.1| primase [Escherichia albertii] gi|52697254|gb|AAU86364.1| primase [Shigella boydii] gi|52697256|gb|AAU86365.1| primase [Shigella boydii] gi|52697258|gb|AAU86366.1| primase [Shigella boydii] gi|52697260|gb|AAU86367.1| primase [Shigella boydii] Length = 168 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163 >gi|52697316|gb|AAU86395.1| primase [Shigella dysenteriae] gi|52697778|gb|AAU86626.1| primase [Escherichia coli] gi|52697788|gb|AAU86631.1| primase [Escherichia coli] Length = 161 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 77/161 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 Q + ++L L + + K + R Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMR 161 >gi|52697252|gb|AAU86363.1| primase [Shigella boydii] Length = 166 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163 >gi|52697262|gb|AAU86368.1| primase [Shigella boydii] gi|52697382|gb|AAU86428.1| primase [Shigella boydii] Length = 167 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162 >gi|189459508|ref|ZP_03008293.1| hypothetical protein BACCOP_00132 [Bacteroides coprocola DSM 17136] gi|189433760|gb|EDV02745.1| hypothetical protein BACCOP_00132 [Bacteroides coprocola DSM 17136] Length = 303 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 5/105 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I + +PI + + + W P+ +EKTPSF N K +Y Sbjct: 2 ETEIDRMK-KMPIEDFLAR---LGHHPVQRRANAVWYRSPYREEKTPSFKVNPEKNLWYD 57 Query: 65 FSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIE 108 F G+ + + F+ V+ +A ++G+PLP +P+ Sbjct: 58 FGEGKGGNIFALAGEFIRTDDFLAQVKYVAEMSGMPLPEHEPRQS 102 >gi|52697264|gb|AAU86369.1| primase [Shigella boydii] Length = 166 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162 >gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1] gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1] Length = 906 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 68/356 (19%), Positives = 124/356 (34%), Gaps = 52/356 (14%) Query: 43 CPFHDEKTPSFHCN---DSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL------ 92 CPF K F + Y+C+SC V+GD +FL ++ +L Sbjct: 58 CPFCGHK-GCFKLHCEESENEHYFCYSCGVRGDIFNFLVHFDQAKHSRDAAIKLINGELD 116 Query: 93 ---------AAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143 A V ++ E+ + L A +++ + + L Sbjct: 117 GVTILPAPRANRTKVEAERIELTAEQ-FARRQALYLA---AWEYYFEQMIDGESTPLQSL 172 Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 +D+R + + + +++GY SR +L +L F+ E++ +GL+ + S + Sbjct: 173 MDKRKLSQNVLIDYEVGY---SRGALWRYLIDSEFTLEEMYASGLVKESPQSP-YDFFPK 228 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 IFP G + PE K Y Sbjct: 229 GVYIFPHYDETGAIC------------RFTFKDPE------KKVAYQLSKLFWLNNIQFY 270 Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCF 321 N + +VEG D+L+L G Q V + +++ QL + + +V F Sbjct: 271 GQHTMNRQGTVAVVEGEFDLLALMDHGWQGPVIATNGQISQAQLAWIKENLHDRNVVTFF 330 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 D D G + K + L L + +G+D D ++R + E L+ + Sbjct: 331 DSDPAGDKYREKLVQLGLPA----LVQVTLPEGQGKDIDDYLRQDNALSIEVLVEQ 382 >gi|157325072|ref|YP_001468497.1| gp117 [Listeria phage A511] gi|66733080|gb|AAY52898.1| gp117 [Listeria phage A511] Length = 353 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 50/361 (13%) Query: 33 NAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 + + CCPF E F+ + ++G ++C C+ KG+ ++F+ L +F ++ Sbjct: 14 KDIGHELRFCCPFCGEDDYKFYVKVSGDKTEGLWHCKKCNEKGNPVTFVMKYLNINFKDA 73 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 + L + + + + + ++ LK + + +E Sbjct: 74 LDIL-EVYDYEIDENSLSSRDVGVTEEEFLLIL----------LKKSSEPEEVETSEEMT 122 Query: 149 IDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR- 203 + + A + + +G + +++ + + D Sbjct: 123 LTPPRLPTNFKRLADNMNNPEALPFLNYAHSRGITLDQLFLHNIGYVIEGQVEKVDGNMM 182 Query: 204 ---NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 N L+F + GQ + R ++ + + + K ++N A Sbjct: 183 TLRNHLVFLTHGNDGQYQYWNTRAITPTGIKAFNAPSKQDEYSKRTTVFNLNIAK----- 237 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---I 317 ++ ++I+ EG +D L++ ++ V++ G +T Q+ LL I Sbjct: 238 ---------NTPYVIVHEGVIDALTMGES----GVATFGKQITREQIELLLNNVREDQPI 284 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 L D + A + V+ ED + V Sbjct: 285 YLFLDTE-----AYEVTTKIASSLYEKHKETYIVIHGD-EDANDMGYEKSWDCLRNNSVR 338 Query: 378 S 378 + Sbjct: 339 A 339 >gi|254977003|ref|ZP_05273475.1| DNA primase [Clostridium difficile QCD-66c26] gi|255651922|ref|ZP_05398824.1| DNA primase [Clostridium difficile QCD-37x79] Length = 217 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 20/121 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M F + + +P Y + R CCPFHD+K PS + Sbjct: 1 MRKSNVF-EAVKQAVPTRQAAESYGIQLGRNG--------MTCCPFHDDKHPSMKVDR-- 49 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA-------GVPLPVVDPKIEKKEK 112 ++CF C GD + F + L G + ++ +LA G P P K + Sbjct: 50 -RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVGFDAKGHDPPRRKPGKRKISE 108 Query: 113 I 113 Sbjct: 109 E 109 >gi|326569162|gb|EGE19224.1| CHC2 zinc finger family protein [Moraxella catarrhalis BC1] Length = 185 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 12 LIHIPISNL---IGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ L I Y + A CPFHD++ PS N G Y C Sbjct: 99 RQRADLARLPSPIDFYHTYGLTLKGGGVWR-----MAVCPFHDDRHPSLSINTDHGGYIC 153 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 C GD + F A G F+++ + L Sbjct: 154 HVCGASGDMVGFYMARFGVDFVQACKEL 181 >gi|296113715|ref|YP_003627653.1| CHC2 zinc finger family protein [Moraxella catarrhalis RH4] gi|295921409|gb|ADG61760.1| CHC2 zinc finger family protein [Moraxella catarrhalis RH4] Length = 185 Score = 81.5 bits (199), Expect = 4e-13, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 12 LIHIPISNL---IGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ L I Y + A CPFHD++ PS N G Y C Sbjct: 99 RQRADLARLPSPIDFYHTYGLTLKGGGVWR-----MAVCPFHDDRHPSLSINTDHGGYIC 153 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 C GD + F A G F+++ + L Sbjct: 154 HVCGASGDMVGFYMARFGVDFVQACKEL 181 >gi|52697250|gb|AAU86362.1| primase [Shigella boydii] Length = 165 Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 163 >gi|52697266|gb|AAU86370.1| primase [Escherichia albertii] Length = 163 Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 162 >gi|66732761|gb|AAY53352.1| gp49 [Listeria phage P100] Length = 353 Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 49/361 (13%), Positives = 116/361 (32%), Gaps = 50/361 (13%) Query: 33 NAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 + + CCPF E F+ + ++G ++C C+ KG+ ++F+ L +F ++ Sbjct: 14 KDIGHELRFCCPFCGEDDYKFYVKVSGDKTEGLWHCKKCNEKGNPVTFVMKYLNINFKDA 73 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 + L + + + + + ++ LK + + +E Sbjct: 74 LDIL-EVYDYEIDENSLSSRDVGVTEEEFLLIL----------LKKSSEPEEVEISEEVT 122 Query: 149 IDSHAIEMFKLGYAPDSRY----SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR- 203 + + A + + +G + +++ + + D Sbjct: 123 LTPPRLPTNFKRLADNMNNPEALPFLNYAHSRGITLDQLFLHNIGYVIEGQVEKVDGNMM 182 Query: 204 ---NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 N L+F + GQ + R ++ + + + K ++N A Sbjct: 183 TLRNHLVFLTHGNDGQYQYWNTRAITPMGIKAFNAPSKQDEYSKRTTVFNLNIAK----- 237 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---I 317 ++ ++I+ EG +D L++ ++ V++ G +T Q+ LL I Sbjct: 238 ---------NTPYVIVHEGVIDALTMGES----GVATFGKQITREQIELLLNNVREDQPI 284 Query: 318 VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 L D + A + V+ ED + V Sbjct: 285 YLFLDTE-----AYEVTTKIASSLYEKHKETYIVIHGD-EDANDMGYEKSWDCLRNNSVR 338 Query: 378 S 378 + Sbjct: 339 A 339 >gi|52697268|gb|AAU86371.1| primase [Shigella boydii] gi|52697270|gb|AAU86372.1| primase [Shigella boydii] gi|52697276|gb|AAU86375.1| primase [Shigella boydii] gi|52697322|gb|AAU86398.1| primase [Shigella boydii] gi|52697358|gb|AAU86416.1| primase [Escherichia coli] gi|52697366|gb|AAU86420.1| primase [Shigella flexneri] Length = 165 Score = 81.1 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161 >gi|52697274|gb|AAU86374.1| primase [Shigella boydii] gi|52697792|gb|AAU86633.1| primase [Escherichia coli] Length = 164 Score = 81.1 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161 >gi|326562838|gb|EGE13128.1| CHC2 zinc finger family protein [Moraxella catarrhalis 46P47B1] Length = 185 Score = 81.1 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 27/53 (50%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 A CPFHD++ PS N G Y C C GD + F A G F+++ + L Sbjct: 129 MAVCPFHDDRHPSLSINTDHGGYICHVCGASGDMVGFYMARFGVDFVQACKEL 181 >gi|52697342|gb|AAU86408.1| primase [Escherichia coli] Length = 163 Score = 81.1 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 ELGNKLGILDDSQLERLIPKAAESGVSRPVPQLKRTTMRI 160 >gi|281422162|ref|ZP_06253161.1| putative DNA primase [Prevotella copri DSM 18205] gi|281403667|gb|EFB34347.1| putative DNA primase [Prevotella copri DSM 18205] Length = 356 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 47/364 (12%), Positives = 96/364 (26%), Gaps = 40/364 (10%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + +I+ L + I + + A C HD+ PS N K Sbjct: 2 IDKMYIQKLRE-LDIMKVADA--------LGMGIRNKRALCIHHDDHHPSLAFNPRKNSC 52 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +C+SC D + + +F+++ + LA V + ++ K L+ + Sbjct: 53 HCYSCGFSADTIGLVMERFQMNFLDACKWLANQFDVYI-----GDTEQYKSHNQLVTASQ 107 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR---EHLRQKGFS 179 D + H +D E L + + Sbjct: 108 RRLDSIRSICAQRMVEHGHVDATCSRVDVEYFERLFAQMHLTESGELFLLEKRMLSPEVV 167 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 E I + LIFP + G++++ R L + + Sbjct: 168 ERCHIVSTETKVCMGRVGQGTFDAPSLIFPYFNQEGKLVSVQSRYLGEEKEKSRFKFAPG 227 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 + +Y Y + +++ EG D + G + Sbjct: 228 ----SHRMVYGLERLKEYPK-----------QEPLLITEGPSDCWTALTLGFHAIAIPSA 272 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 T + L + + + D D+ G ++ +D Sbjct: 273 TLFDS-HCQPLLE-GRNLHMFPDQDEAGFNLYFELKKSFPQLKYHQL------PDGCKDL 324 Query: 360 DSFI 363 Sbjct: 325 SEHY 328 >gi|52697308|gb|AAU86391.1| primase [Shigella boydii] Length = 159 Score = 80.7 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 77/159 (48%) Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R G Sbjct: 1 QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 K AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLTLPLISQVPGETLRIYLRQE 120 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 LGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 159 >gi|332877361|ref|ZP_08445109.1| CHC2 zinc finger domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684744|gb|EGJ57593.1| CHC2 zinc finger domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 290 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRL 92 + W P+ +E+TPSF N +K +Y F GD + + F+E V+ + Sbjct: 28 RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIRSGDFMEQVKFI 87 Query: 93 AAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143 A A +P+PV + + + K +E A FH L + +R Y Sbjct: 88 AETANMPMPVPEVSRPTFQPKPSEPAFEGVE-AAPLFHSPLTDYLAERGIPY 138 >gi|294645853|ref|ZP_06723533.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a] gi|294805773|ref|ZP_06764651.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292638804|gb|EFF57142.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a] gi|294447024|gb|EFG15613.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 290 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRL 92 + W P+ +E+TPSF N +K +Y F GD + + F+E V+ + Sbjct: 28 RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIRSGDFMEQVKFI 87 Query: 93 AAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYY 143 A A +P+PV + + + K +E A FH L + +R Y Sbjct: 88 AETANMPMPVPEVSRPTFQPKPSEPAFEGVE-AAPLFHSPLTDYLAERGIPY 138 >gi|52697272|gb|AAU86373.1| primase [Shigella boydii] Length = 165 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 EGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 161 >gi|52697294|gb|AAU86384.1| primase [Shigella boydii] gi|52697796|gb|AAU86635.1| primase [Escherichia coli] Length = 164 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160 >gi|52697344|gb|AAU86409.1| primase [Escherichia coli] gi|52697376|gb|AAU86425.1| primase [Escherichia coli] gi|52697794|gb|AAU86634.1| primase [Escherichia coli] Length = 163 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160 >gi|52697336|gb|AAU86405.1| primase [Escherichia coli] Length = 162 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 77/159 (48%) Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R G Sbjct: 1 QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 K AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 120 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 LGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 159 >gi|310826737|ref|YP_003959094.1| DNA primase [Eubacterium limosum KIST612] gi|308738471|gb|ADO36131.1| DNA primase [Eubacterium limosum KIST612] Length = 203 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 2/95 (2%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH+++ PS + D Y+CF+C GD + + L ++ ++LA+ + Sbjct: 29 MALCPFHNDRHPSLYVLDDH--YHCFACGEHGDVIDLTAKLFDLRLYDAARKLASDFHLA 86 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKN 134 P+ +++ + + L Sbjct: 87 PDKPLPEAIRRKMQHKTKAQQLRENERLCFSVLNE 121 >gi|309778118|ref|ZP_07673055.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53] gi|308914124|gb|EFP59927.1| DNA primase [Erysipelotrichaceae bacterium 3_1_53] Length = 214 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + Y+CF C GD + F +A+ G + E+ +LA G+ Sbjct: 29 MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAAMYGLAKKEAAVQLANDFGLS 85 Query: 100 LP 101 Sbjct: 86 YE 87 >gi|154502942|ref|ZP_02040002.1| hypothetical protein RUMGNA_00763 [Ruminococcus gnavus ATCC 29149] gi|153796481|gb|EDN78901.1| hypothetical protein RUMGNA_00763 [Ruminococcus gnavus ATCC 29149] Length = 214 Score = 80.7 bits (197), Expect = 7e-13, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 29 MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 85 Query: 100 LP 101 Sbjct: 86 YE 87 >gi|294775591|ref|ZP_06741100.1| CHC2 zinc finger domain protein [Bacteroides vulgatus PC510] gi|294450533|gb|EFG19024.1| CHC2 zinc finger domain protein [Bacteroides vulgatus PC510] Length = 290 Score = 80.7 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL 92 + W P+ +E+TPSF N +K +Y F GD + +G F+E V+ + Sbjct: 28 RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIGSNDFMEQVKFI 87 Query: 93 AAIAGVPLPVVD 104 A A +P+PV + Sbjct: 88 AETANMPMPVPE 99 >gi|46242777|gb|AAS83482.1| TraP [Bacteroides fragilis] Length = 292 Score = 80.7 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG-CSFIESVQRL 92 + W P+ +E+TPSF N +K +Y F GD + +G F+E V+ + Sbjct: 28 RSGNELWYRAPYRNERTPSFRVNVAKQLWYDFGTGKGGDIFTLAGEFIGSNDFMEQVKFI 87 Query: 93 AAIAGVPLPVVD 104 A A +P+PV + Sbjct: 88 AETANMPMPVPE 99 >gi|52697378|gb|AAU86426.1| primase [Escherichia coli] Length = 161 Score = 80.7 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 43/160 (26%), Positives = 78/160 (48%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKE 60 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160 >gi|52697372|gb|AAU86423.1| primase [Escherichia coli] gi|52697374|gb|AAU86424.1| primase [Escherichia coli] Length = 165 Score = 80.3 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 43/161 (26%), Positives = 78/161 (48%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 1 HIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRK 60 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 EGKQAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLR 120 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 QELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 161 >gi|52697280|gb|AAU86377.1| primase [Shigella boydii] gi|57996852|emb|CAI45874.1| negative response regulator [Escherichia coli] Length = 159 Score = 80.3 bits (196), Expect = 8e-13, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%) Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK Sbjct: 2 LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 61 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 AFE + +++PL L+ +TPD RA L I+ + + LR Y Q + Sbjct: 62 AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 121 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++L L + + K + R+ Sbjct: 122 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 158 >gi|52697278|gb|AAU86376.1| primase [Shigella boydii] Length = 163 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 77/159 (48%) Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R G Sbjct: 1 QLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEG 60 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 K AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 KEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQE 120 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 LGNKLGILDDSQLERLMPKAAESVVSRPVPQLKRTTMRI 159 >gi|52697798|gb|AAU86636.1| primase [Escherichia coli] Length = 158 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%) Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK Sbjct: 2 LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 61 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 AFE + +++PL L+ +TPD RA L I+ + + LR Y Q + Sbjct: 62 AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 121 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++L L + + K + R+ Sbjct: 122 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 158 >gi|52697800|gb|AAU86637.1| primase [Escherichia coli] Length = 158 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 75/157 (47%) Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK Sbjct: 1 LFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKE 60 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 AFE + +++PL L+ +TPD RA L I+ + + LR Y Q + Sbjct: 61 AFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELG 120 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++L L + + K + R+ Sbjct: 121 NKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 157 >gi|52697352|gb|AAU86413.1| primase [Escherichia coli] Length = 168 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRLVPQLKRTTMRI 163 >gi|52697356|gb|AAU86415.1| primase [Escherichia coli] Length = 166 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 78/162 (48%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRLVPQLKRTTMRI 163 >gi|251780062|ref|ZP_04822982.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084377|gb|EES50267.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 879 Score = 80.3 bits (196), Expect = 9e-13, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 43 CPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CPFH EKTPSF N +K Y C+ C GD + F+ + + ++ + L G+ Sbjct: 29 CPFHSEKTPSFSIKFIPNANKYRYRCWGCDATGDAIDFIMNIKNVDYKKAREIL----GI 84 Query: 99 PLPVVDPK 106 + + Sbjct: 85 QGEKTERE 92 >gi|288926511|ref|ZP_06420430.1| mobilizable transposon, excision protein [Prevotella buccae D17] gi|288336723|gb|EFC75090.1| mobilizable transposon, excision protein [Prevotella buccae D17] Length = 296 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 19/231 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+ + IPI++ + Q Y + YW C P +E TPSF N + +Y F Sbjct: 3 IQHIKQ-IPITDYLQQQCYTPTRVQG-----IHYWYCSPLRNEGTPSFKVNTERNQWYDF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 GD + + L C+ E+++ L + E+K +E+ + Sbjct: 57 GTGEHGDIIDLVCTLQHCTMNEAIELLIDSKQIVHQDFSFGGERKTSKHK-----LEIIS 111 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 SL N L Y+ ERGI F ++ + + I Sbjct: 112 ---VQSLTNPY---LLRYIVERGISLSIANRFCSEIRYNNTNRTYYAIGFANDAGGWEIR 165 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + + I +++ LS LNS Sbjct: 166 SPYFKGCIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNLSSICDTIVLNS 216 >gi|293400255|ref|ZP_06644401.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306655|gb|EFE47898.1| DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 208 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+K PS + ++CF C GD + F + L G + ++ +LA V Sbjct: 23 MACCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVG 79 Query: 100 LPVVDPKIEKKEKIQTDLIR 119 +++ ++ + Sbjct: 80 FDAKGHDPPRRKPVKRKISE 99 >gi|260588276|ref|ZP_05854189.1| DNA primase [Blautia hansenii DSM 20583] gi|260541414|gb|EEX21983.1| DNA primase [Blautia hansenii DSM 20583] Length = 208 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 23 MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 79 Query: 100 LP 101 Sbjct: 80 YE 81 >gi|281420593|ref|ZP_06251592.1| putative DNA primase [Prevotella copri DSM 18205] gi|281405366|gb|EFB36046.1| putative DNA primase [Prevotella copri DSM 18205] Length = 364 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 92/369 (24%), Gaps = 48/369 (13%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ L +PI + + + A CPFHD+ S N +K C+ C Sbjct: 7 IQKLRE-LPIEKVAKE--------MGMKVEHHKALCPFHDDHHASLTFNKTKNSCRCYVC 57 Query: 68 HVK--GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 G + LG F + + LA + L + + Sbjct: 58 MRSSIGT-IDLAMRYLGKDFPSACRWLAEEHQIQLEEDSSSGKSSSFGGSSG-------- 108 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEEKII 184 + + D A + P + R ++ + Sbjct: 109 ---RGASSGSSSDGSSSGDDSGKSSFDASRYARFFEHPWLNQAARRFLFEERKIDWRVVN 165 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS-------------KGESV 231 L D N L P + G++I R L Sbjct: 166 WCRLTSWTDKKGI------NWLQIPYFDTDGRLIGIQNRNLDYTKKKSSSGGCSSDENVS 219 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 P +GA + R + + EG D ++ AG Sbjct: 220 SEEKRPGEEKEQDAPRFRFPYGARCSIYNL-PVVKRLKPGERLFITEGCSDCWAMLSAGH 278 Query: 292 QNVVSSLGTALTEYQLRLL----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 + + T L +LL + D D PG + +++ + Sbjct: 279 KAIAIPSATLLKPEDKQLLTDIGKLYQVEFHMFPDQDVPGESLFMQLREMLPQLVHHQLP 338 Query: 348 VNFVLLSRG 356 S Sbjct: 339 PGCKDFSEY 347 >gi|52697360|gb|AAU86417.1| primase [Escherichia coli] Length = 169 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|52697288|gb|AAU86381.1| primase [Escherichia coli] Length = 168 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 2 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 61 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 62 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 121 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 122 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 163 >gi|153810252|ref|ZP_01962920.1| hypothetical protein RUMOBE_00633 [Ruminococcus obeum ATCC 29174] gi|253578305|ref|ZP_04855577.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|149833431|gb|EDM88512.1| hypothetical protein RUMOBE_00633 [Ruminococcus obeum ATCC 29174] gi|251850623|gb|EES78581.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 227 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 42 MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLS 98 Query: 100 LP 101 Sbjct: 99 YE 100 >gi|325270572|ref|ZP_08137172.1| DNA primase [Prevotella multiformis DSM 16608] gi|324987148|gb|EGC19131.1| DNA primase [Prevotella multiformis DSM 16608] Length = 296 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 74/232 (31%), Gaps = 21/232 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNENTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 F GD + + AL C+ ++++ L I V E+K +E+ Sbjct: 56 FGTGEHGDIIDLVCALQHCTISKAIELLGDIKQVAHRDFSFGGERKTSKHK-----LEII 110 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + SL N L Y+ ERGI ++ + + I Sbjct: 111 S---VQSLTNPY---LLRYIAERGISLSIANRLCSEIRYNNTNRTYYAIGFSNDAGGWEI 164 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + + I +++ LS LNS Sbjct: 165 RSPYFKGCIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNLSSTCDTIVLNS 216 >gi|52697340|gb|AAU86407.1| primase [Escherichia coli] Length = 167 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697290|gb|AAU86382.1| primase [Escherichia coli] Length = 166 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|52697362|gb|AAU86418.1| primase [Escherichia coli] Length = 165 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 42/162 (25%), Positives = 77/162 (47%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 1 DHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVR 60 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Sbjct: 61 KEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYL 120 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 Q + ++L L + + K + R+ Sbjct: 121 RQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 162 >gi|225377312|ref|ZP_03754533.1| hypothetical protein ROSEINA2194_02959 [Roseburia inulinivorans DSM 16841] gi|225210843|gb|EEG93197.1| hypothetical protein ROSEINA2194_02959 [Roseburia inulinivorans DSM 16841] Length = 214 Score = 79.5 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH++KTPS + Y+CF C GD + F +AL G + E+ +LA G+ Sbjct: 29 MACCPFHNDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLAKKEAAVQLANDFGLS 85 Query: 100 LP 101 Sbjct: 86 YE 87 >gi|160890228|ref|ZP_02071231.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC 8492] gi|317480211|ref|ZP_07939318.1| DNA primase [Bacteroides sp. 4_1_36] gi|156859960|gb|EDO53391.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC 8492] gi|316903593|gb|EFV25440.1| DNA primase [Bacteroides sp. 4_1_36] Length = 1017 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 18/106 (16%) Query: 1 MNYPRDFIKDLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCN 56 M + +D IK + + ++IG + + +R +Y CP EK H + Sbjct: 1 MYFTQDDIKRIKEASKGRLLDVIGDFHELRKRGA-----EYKCECPKCHGQEK---LHIS 52 Query: 57 DSKGFYYCFSC----HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 +K + CFSC + L +L F+E+ LA V Sbjct: 53 PAKQIFKCFSCPDIKGK--EPLDYLQRAEDMQFLEACDYLARKFNV 96 >gi|325680135|ref|ZP_08159701.1| CHC2 zinc finger domain protein [Ruminococcus albus 8] gi|324108210|gb|EGC02460.1| CHC2 zinc finger domain protein [Ruminococcus albus 8] Length = 198 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 12/111 (10%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ + + Y +G+ A CPFH E+ PS + YYCF C Sbjct: 5 EEVKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYEDH--YYCFGCQ 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIA--GVPLPVVDPKIEKKEKIQTDL 117 GD + + L G S IE+V+++ + G+ L P + +K + ++ Sbjct: 56 AHGDVIKLVQELFGLSAIEAVKQINSDFALGLDLDKP-PDNKAIQKRRREI 105 >gi|160943487|ref|ZP_02090720.1| hypothetical protein FAEPRAM212_00978 [Faecalibacterium prausnitzii M21/2] gi|158445166|gb|EDP22169.1| hypothetical protein FAEPRAM212_00978 [Faecalibacterium prausnitzii M21/2] Length = 151 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH +K PS + ++CF+C GD + F+ L S ++V++L G+ L Sbjct: 3 CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMELA 59 Query: 102 VVDPKIEKKEKI--QTDLIRLIEVATDF 127 ++ + + L+ + Sbjct: 60 DGKVRLAPRRPPTVRQQLLDYYRCLQRW 87 >gi|109392511|ref|YP_655640.1| gp61 [Mycobacterium phage Che12] gi|91980661|gb|ABE67380.1| gp61 [Mycobacterium phage Che12] Length = 129 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 CPFH E+TPS + + CF+C V+GD +S + SF E+V+ +A G+ Sbjct: 28 KCLCPFHGEETPSAAVSYDNQGFNCFACSVRGDVISIIRHEEEVSFAEAVR-IAE--GIS 84 Query: 100 LPVVDPKIEKKEKI 113 + P K + Sbjct: 85 VGSNVPLQRKPPRK 98 >gi|325860513|ref|ZP_08173621.1| CHC2 zinc finger domain protein [Prevotella denticola CRIS 18C-A] gi|325481977|gb|EGC85002.1| CHC2 zinc finger domain protein [Prevotella denticola CRIS 18C-A] Length = 225 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IS I +Y ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ---IS--ITEY--LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 F GD + + AL C+ E+++ L Sbjct: 56 FGTGEHGDIIDLVCALQHCTMNEAIELL 83 >gi|305432456|ref|ZP_07401618.1| DNA primase [Campylobacter coli JV20] gi|304444495|gb|EFM37146.1| DNA primase [Campylobacter coli JV20] Length = 359 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 68/354 (19%), Positives = 141/354 (39%), Gaps = 24/354 (6%) Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 +I+ EGYMD ++ +AG N V+ LGTALTE L L+ + +++LCFD D+ GL AA + Sbjct: 1 MIVCEGYMDAIAFHKAGFNNAVAVLGTALTENHLPLIHRYEAKVILCFDNDEAGLNAATR 60 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393 + L+ H I G LL G+DP + L+ + + L + +R + Sbjct: 61 SAFLLSTHKIDGK---VALLEGGKDPAELVANNQSAKLHTLLEKGMDLGEFYIRRILSSF 117 Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453 S N+ ++ + +++ ++ + Y + L + + + Sbjct: 118 SLNSALDKQKALENIQKYTFSLE-PLVASSYVGLVSKLLGVDEKLIVLTSNR-------- 168 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 + + S + K + E LL L N+P + E + +++DIR Sbjct: 169 -----KPSKTINFNTSFQQTQNHNPKSHITELELLNYLKNNPN-MHELFIKISDIRCF-- 220 Query: 514 ELQKLWSFLFSDF----VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + L + + + F + + L + F + +++ + + + A Sbjct: 221 KHKVLLEKILEHKSYEDSDIREFESKNFSKDLSQIEFLWGICKVNLAFLNHINITNSYLA 280 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + ++ L + E +++ + + + + EK L LH Sbjct: 281 LKKQIFTLIEKNFVLLSKNLNDHELVEFLKENLFLLKNEKDEEKLEALFKNLHR 334 >gi|288871616|ref|ZP_06118254.2| putative DNA primase [Clostridium hathewayi DSM 13479] gi|288862782|gb|EFC95080.1| putative DNA primase [Clostridium hathewayi DSM 13479] Length = 161 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKGFYYCFSC 67 +++ + +++ +Y + + CPFH ++ S D ++C +C Sbjct: 2 EEIKAAYSMRDIVERY------GFRPTRAGFI-PCPFHSGDRQASLKVYDRD--FHCHAC 52 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 GD + F+ + F + Q L P + + +K + ++ E Sbjct: 53 GAHGDIIDFVMMMDDVDFKTAYQSLGGEYQKPTFSSRLAVYEAQKQREMRHKMQERIAA- 111 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMF 157 L N Y++ S Sbjct: 112 -QKDLNNTLLTVYRTYMERSEPLSDIWTDC 140 >gi|291460782|ref|ZP_06600172.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262] gi|291416741|gb|EFE90460.1| DNA primase [Oribacterium sp. oral taxon 078 str. F0262] Length = 203 Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 23/125 (18%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 + N + CPFHD++ PS + + CF C KGD + F+S L ++ Sbjct: 25 KVGRNGMMK-----CPFHDDRNPSMKVD---QNFICFGCQEKGDVIRFVSKLFDLPPYDA 76 Query: 89 VQRLAAIAGVPLPVVD---------PKIEKKEKIQTDLIR----LIEVATDFFHHSLKNA 135 +L G+ + + K +++ + + + V D+F L N Sbjct: 77 AVKLTEDMGLTVTAENRPGVQPGIRKKAKRERTERQQFEQSVDRVYGVYCDYFR--LLNQ 134 Query: 136 RDKRL 140 + Sbjct: 135 WAEEY 139 >gi|332654349|ref|ZP_08420093.1| DNA primase [Ruminococcaceae bacterium D16] gi|332517435|gb|EGJ47040.1| DNA primase [Ruminococcaceae bacterium D16] Length = 208 Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +KTPS + Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 23 MACCPFHHDKTPSMKLDR---RYHCFGCGADGDVIDFAAALYGLGKKEAAIQLANDFGLS 79 Query: 100 LP 101 Sbjct: 80 YE 81 >gi|52697286|gb|AAU86380.1| primase [Escherichia coli] Length = 163 Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 77/160 (48%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 ++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R Sbjct: 1 IQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVRKE 60 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 GK AFE + +++PL L+ +TPD RA L I+ + + LR Y Q Sbjct: 61 GKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQ 120 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++L L + + K + R+ Sbjct: 121 ELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRI 160 >gi|317501741|ref|ZP_07959928.1| hypothetical protein HMPREF1026_01872 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896863|gb|EFV18947.1| hypothetical protein HMPREF1026_01872 [Lachnospiraceae bacterium 8_1_57FAA] Length = 224 Score = 78.8 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 11/95 (11%) Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 + R ACCPFH ++ PS + Y+CF+C V GD + F + L G S Sbjct: 22 IKVKRNG--------MACCPFHKDRHPSM---KADKIYHCFACGVGGDAIDFTARLFGIS 70 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 E+ ++L G+ + V + ++ +++ Sbjct: 71 QYEAAKKLVEDFGLDIKVGNRSKYERTPRNRAILK 105 >gi|225377670|ref|ZP_03754891.1| hypothetical protein ROSEINA2194_03321 [Roseburia inulinivorans DSM 16841] gi|225210534|gb|EEG92888.1| hypothetical protein ROSEINA2194_03321 [Roseburia inulinivorans DSM 16841] Length = 206 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CPFH+++ PS N+ ++YCF C GD + ++ L S E+ Q+LA G+ Sbjct: 29 MCSCPFHEDRHPSMKLNER--YFYCFGCGATGDVIDLVAKLFDLSSYEAAQKLAQDFGI 85 >gi|149003983|ref|ZP_01828791.1| DNA primase [Streptococcus pneumoniae SP14-BS69] gi|147758042|gb|EDK65048.1| DNA primase [Streptococcus pneumoniae SP14-BS69] Length = 236 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 33/259 (12%), Positives = 79/259 (30%), Gaps = 23/259 (8%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 L+ ++ + + + + + E + I K + Y + D Sbjct: 1 MAYLLTKTRISPIEFYIHQYKPENSENLQAQIEFIEKIAPLIVQEKSIAAQNSYIHILAD 60 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L I + R ++ R P+ + K EA LL Sbjct: 61 SLASFDYTQIEQIVNESRQVQRQNRMERISRPTPIT----MPVTKQLSAIMRAEAHLLYR 116 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 ++ P ++ Y+ D + E Q L+ L L E Sbjct: 117 MMESP-LVLNDYRLREDFAFATPEFQVLYDLLGQYGN-------------LPPEVLAEQT 162 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++++R E + ++ + + + + LL++ I+K++ + + G+ Sbjct: 163 EEVERAWYQVLAQDLPAEISPQELSE-----VEMTRNKALLNQDNMRIKKKVQEASHVGD 217 Query: 611 AEKTAILISILHEVHIQIH 629 + + L ++ Sbjct: 218 TDTALEELERLISQKRRME 236 >gi|255690379|ref|ZP_05414054.1| putative mobilizable transposon, excision protein [Bacteroides finegoldii DSM 17565] gi|260624060|gb|EEX46931.1| putative mobilizable transposon, excision protein [Bacteroides finegoldii DSM 17565] Length = 292 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 10 DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 D++ HIP+++ + + + R + W P+ +E+TPSF N +K +Y F Sbjct: 7 DVMRHIPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVVDPK 106 GD + + F+E V+ +A +P+PV + Sbjct: 62 GKGGDIFTLAGEFIRSNDFMEQVKFIAETVNMPMPVPEGS 101 >gi|327198048|ref|YP_004306415.1| gp3 [Burkholderia phage KL3] gi|310657182|gb|ADP02296.1| gp3 [Burkholderia phage KL3] Length = 931 Score = 78.0 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 8/116 (6%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R + Y P HD+K+PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 S V G + + G + ++V+ L G+PL P +++ + Sbjct: 60 DHSADVGGSCIDLVIHTRGGTVADAVRYLHDAYGIPLDRQAPAERREKTKFEYIAD 115 >gi|167770082|ref|ZP_02442135.1| hypothetical protein ANACOL_01424 [Anaerotruncus colihominis DSM 17241] gi|167667714|gb|EDS11844.1| hypothetical protein ANACOL_01424 [Anaerotruncus colihominis DSM 17241] Length = 637 Score = 78.0 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 55/390 (14%), Positives = 98/390 (25%), Gaps = 83/390 (21%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDR-----RKTNAVKGDYWACCPFHDEKTPSFHC 55 M + F+ +L +P +Y+ R R + P H ++TPS Sbjct: 4 MQWDERFLNELRALLP------EYMAQKRIVVGTRGKKLIH----CINPEHRDRTPSMSY 53 Query: 56 NDSKGFYYCFSCHVKGDHLSFL-SALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 + +CF C D + C SF V++ + +PLP P + + Sbjct: 54 HPQSRRLHCFGCGANYDLFDVIAMDYPDCDSFPRQVKKACELFCIPLPDNAPASKPGVR- 112 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + A L + + E G Sbjct: 113 -----AVRRAAAQ--PARLTADYTDMVRAAVAEHGAGGSYFTARG--------------- 150 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 I + G+ + R S + +Y Sbjct: 151 ----------------IPRALCERYSLYEAGGRAWMPVFLDGKCTCYCARATSDNITPRY 194 Query: 234 LNSPE-TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL----CQ 288 NSP +F+ G + + E +D LS+ + Sbjct: 195 KNSPGAMDIFNAGYL------------------TGEGKGGALFIAEAILDALSIEACGYR 236 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 A +++G L+ +V D D G R + G Sbjct: 237 AVALCGAANVGKFLSLCAAHPAAAAGYTLVAAGDMDAAGERMNRSLKE---GLEALGLSC 293 Query: 349 NFVLLSRG-EDPDSFIRCYGKTAFEKLIVE 377 + L G +D + + L Sbjct: 294 AVLQLPGGAKDANELLLSDRAALARALAES 323 >gi|74315212|gb|ABA02284.1| DNA primase [Tomato big bud phytoplasma] Length = 551 Score = 78.0 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 55/311 (17%), Positives = 98/311 (31%), Gaps = 52/311 (16%) Query: 43 CPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CPFHD K+ S N + C+SC D ++ + G F +S L Sbjct: 33 CPFHDSKSGLSADINRQNKIW-CWSCGKAFDTITVYQKITGKDFAQSFTDLTNFYQSAEY 91 Query: 102 VVDPKIEKKEK-------------------------IQTDLIRLIEVATDFFHHSLKNAR 136 + + ++ + + + F+ L Sbjct: 92 QELTQAKSASAFTCNESFKLSNNENKALNNFANNNLHLDTILAIWDEISHFYQKQLWATP 151 Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 Y L +R ++ I+ F++G+A + +L +L + LL Sbjct: 152 AALD-YLLRKRQLNPLLIKEFQIGFANKNNQNLLNYLENQQADLMPYYAVDLLRKNPKF- 209 Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------GESVKYLNSPETILFHKGKNLYN 250 SYD N + P+ GQ+I + R + N +F Y Sbjct: 210 -SYDGCLNCWLIPVFDENGQIIHYY-RHHYPAELPYRPKYQALRNLTNQTIFS---IPYG 264 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL--R 308 F A + + IL EG+ DVL Q ++NV+ + + Sbjct: 265 FHYAKKAI----------LDTKTAILHEGFFDVLQSYQNQIKNVIGLITVSNNFSPFILD 314 Query: 309 LLWKLSPRIVL 319 K +++L Sbjct: 315 FFKKYQIKVIL 325 >gi|313112557|ref|ZP_07798220.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310625123|gb|EFQ08415.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 151 Score = 78.0 bits (190), Expect = 4e-12, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH +K PS + ++CF+C GD + F+ L S ++V++L G+ L Sbjct: 3 CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMALA 59 Query: 102 VVDPKIEKKEKI--QTDLIRLIEVATDF 127 ++ + + L+ + Sbjct: 60 DGKVRLAPRRPPTVRQQLLDYYRCLQRW 87 >gi|769797|emb|CAA60112.1| dnaE [Enterococcus faecalis] Length = 264 Score = 78.0 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 84/264 (31%), Gaps = 19/264 (7%) Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + R+ N E+ + L + +++ R Y I Q Sbjct: 7 NHGRETVFSFKMNYHRLTRNMNNEKEQLDYVNELLRELTNVQSPLERDRYLNQIAQEFQL 66 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQK----------GPSQRLMQSSLVKGKLSKKPSLRE 484 + + + + R Q+ ++ + + E Sbjct: 67 SVHSLEEQFNQLKQEQRSVQRQERQQFYQDEMMPPPMEEPVFEENHVQNKLPLTQVQKAE 126 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 +LL L+N + Q Q+L D + ++E Q+L+ L S + F + L + Sbjct: 127 RSLLFRLMNEQGVRQTV-QQLPDFSFAHDEYQELYFLLESYATLHQSFDIADFINFLQDN 185 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 +L ++ + +E + +AL + ++K + ++ Sbjct: 186 QTKQLAIEIA--------YQNLSEESSEREVADLLHVIALSSIAEAIEQKKIQQQEAKRV 237 Query: 605 VTAKGEAEKTAILISILHEVHIQI 628 + EAE T +I + ++ Q Sbjct: 238 GNQQLEAELTMEIIQLARQLKAQR 261 >gi|257437683|ref|ZP_05613438.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257199990|gb|EEU98274.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 151 Score = 78.0 bits (190), Expect = 5e-12, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH +K PS + ++CF+C GD + F+ L S ++V++L G+ L Sbjct: 3 CCPFHGDKHPSMKVDS---RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKNDFGMALA 59 Query: 102 VVDPKIEKKE--KIQTDLIRLIEVATDF-FHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 ++ + ++ L+ + ++ ++ ++ +L+ Sbjct: 60 DGKVRLAPRRPPSVRQQLLDYYRCLQRWRIRYAPQSPTEELHPCFLEAIKNLDIVEYYLD 119 Query: 159 LGYAPD 164 PD Sbjct: 120 CSVLPD 125 >gi|9630442|ref|NP_046874.1| gp58 [Mycobacterium phage D29] gi|6136229|sp|O64249|VG58_BPMD2 RecName: Full=Gene 58 protein; AltName: Full=Gp58 gi|3172306|gb|AAC18499.1| putative DNA primase [Mycobacterium phage D29] Length = 129 Score = 77.6 bits (189), Expect = 5e-12, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 8/101 (7%) Query: 17 ISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I+ +I +Y WD ++ CPFH ++TPS + + C +C V+GD + Sbjct: 6 IAEVIQRYYPDWDP---PPDHYEWNKCLCPFHGDETPSAAVSYDLQGFNCLACGVRGDVI 62 Query: 75 SFLSALLGCSFIESVQRLAA--IAGVPLPVVDPKIEKKEKI 113 S + SF E+V+ +A G +PV K + Sbjct: 63 SIIRHEEEVSFAEAVR-IAEGLSVGGNIPVQRKPARKPSRR 102 >gi|294855367|gb|ADF44621.1| DNA primase [Escherichia sp. TW09276] gi|294855369|gb|ADF44622.1| DNA primase [Escherichia sp. TW09254] gi|294855371|gb|ADF44623.1| DNA primase [Escherichia sp. TW09266] gi|294855373|gb|ADF44624.1| DNA primase [Escherichia sp. TA04] gi|294855375|gb|ADF44625.1| DNA primase [Escherichia sp. B685] gi|294855381|gb|ADF44628.1| DNA primase [Escherichia sp. H605] gi|294855383|gb|ADF44629.1| DNA primase [Escherichia sp. B49] gi|294855385|gb|ADF44630.1| DNA primase [Escherichia sp. TW09308] gi|294855387|gb|ADF44631.1| DNA primase [Escherichia sp. B1225] gi|294855389|gb|ADF44632.1| DNA primase [Escherichia sp. B646] gi|294855391|gb|ADF44633.1| DNA primase [Escherichia sp. E1118] gi|294855393|gb|ADF44634.1| DNA primase [Escherichia sp. E1195] gi|294855395|gb|ADF44635.1| DNA primase [Escherichia sp. E1196] gi|294855397|gb|ADF44636.1| DNA primase [Escherichia sp. E471] gi|294855399|gb|ADF44637.1| DNA primase [Escherichia sp. E472] gi|294855401|gb|ADF44638.1| DNA primase [Escherichia sp. E620] gi|294855403|gb|ADF44639.1| DNA primase [Escherichia sp. M1108] gi|294855405|gb|ADF44640.1| DNA primase [Escherichia sp. TA290] gi|294855417|gb|ADF44646.1| DNA primase [Escherichia sp. RL325/96] gi|294855419|gb|ADF44647.1| DNA primase [Escherichia sp. Z205] Length = 148 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAENGVSRPVPQLKR 148 >gi|52697328|gb|AAU86401.1| primase [Shigella flexneri] Length = 153 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 69/149 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 4 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 63 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 64 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 123 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPS 463 L + + K + Sbjct: 124 LDDSQLERLMPKAAESGVSRPVPQLKRTT 152 >gi|268610078|ref|ZP_06143805.1| DNA primase [Ruminococcus flavefaciens FD-1] Length = 197 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 9/108 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 D+ + + Y +G+ A CPFH E+ PS YYCF C Sbjct: 5 DDIKELVDVPTAARSY------GVEVHRGN-MALCPFHRERHPSCKLYADH--YYCFGCQ 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 GD + + L G IE+V++L + + L + P +K + Sbjct: 56 AHGDVIRLVQELFGLRAIEAVKQLNSDFALGLDLDKPPDMEKINRRRR 103 >gi|237726509|ref|ZP_04556990.1| TraP [Bacteroides sp. D4] gi|229435035|gb|EEO45112.1| TraP [Bacteroides dorei 5_1_36/D4] Length = 292 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%) Query: 10 DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 D++ +PI+ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 7 DIIRQMPIAVFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLSFLSALLG-CSFIESVQRLAAIAGVPLPVVD 104 GD + +G F+E V+ +A A +P+PV + Sbjct: 62 GKGGDIFTLAGEFIGSNDFMEQVKFIAETANMPMPVPE 99 >gi|168207054|ref|ZP_02633059.1| CHC2 zinc finger domain protein [Clostridium perfringens E str. JGS1987] gi|170661571|gb|EDT14254.1| CHC2 zinc finger domain protein [Clostridium perfringens E str. JGS1987] Length = 625 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 9/95 (9%) Query: 8 IKDLLIHIPISNLIGQ-YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 + + IP+ ++ + V+ + C EKTPS N K ++Y F Sbjct: 277 LDKIKE-IPLEDVCNRLRVNTSSKGKKLW-------CNIRGEKTPSCCINIDKNYWYDFG 328 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F+S + + E++ +LA + G+ Sbjct: 329 TSKGGDVIKFVSEVEKINSKEAIYKLADMFGIEPE 363 >gi|160943406|ref|ZP_02090640.1| hypothetical protein FAEPRAM212_00897 [Faecalibacterium prausnitzii M21/2] gi|158445266|gb|EDP22269.1| hypothetical protein FAEPRAM212_00897 [Faecalibacterium prausnitzii M21/2] Length = 202 Score = 77.6 bits (189), Expect = 6e-12, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH + PS ND+ +YYCF C GD + + L + ++ ++LA+ G+ Sbjct: 33 CCPFHSDSDPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLASDFGLDPD 90 Query: 102 VVDPKIEKKEKIQTDLIR 119 + L Sbjct: 91 KPPANAIALPPPKRGLTD 108 >gi|293373483|ref|ZP_06619838.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] gi|292631621|gb|EFF50244.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] Length = 297 Score = 77.6 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+ + IP+++ + + + R + W P+ E+TPSF N +K F+Y F Sbjct: 3 IEAIRT-IPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQFWYDF 56 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F+E + +A A + + Sbjct: 57 GLGKGGDIFTLAGEFLQ---SNDFMEQAKFIAEAANITV 92 >gi|34540614|ref|NP_905093.1| mobilizable transposon, excision protein [Porphyromonas gingivalis W83] gi|34396927|gb|AAQ65992.1| mobilizable transposon, excision protein, putative [Porphyromonas gingivalis W83] Length = 297 Score = 77.6 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 74/217 (34%), Gaps = 15/217 (6%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + D+ + I + + +YW C P E TPSF N + +Y Sbjct: 3 LHDIKQ-VSIVDY------LAQAGFEAKLIKGVNYWYCSPLRSELTPSFKVNAERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-PVVD-PKIEKKEKIQTDLIRLIE 122 F+ GD + + L CS E+++RL+A+ GV L P I ++ + + Sbjct: 56 FATGDHGDIIDLVCTLQHCSTAEAMKRLSALKGVRLAPSFSFGGITPVSLQRSSMELISV 115 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-RYSLREHLRQKGFSEE 181 A L + + + K +A + LR F Sbjct: 116 QAVKHPKLLLYLSERGLQPSDASPFLSEVYYKVSRKCFFALGFPNDAGGWELRNPYFKGC 175 Query: 182 KIIEAGLLIDGDNSAT--SYDRFRNRLIFPIRSSRGQ 216 +A I G +S ++ F + L + GQ Sbjct: 176 FAPKAITTIKGTDSHKLLLFEGFMDFLSWRKLHPEGQ 212 >gi|168983697|dbj|BAG11727.1| DNA primase [Escherichia coli O55:H7] gi|168983699|dbj|BAG11728.1| DNA primase [Escherichia coli O55:H7] gi|168983701|dbj|BAG11729.1| DNA primase [Escherichia coli O55:H7] gi|168983703|dbj|BAG11730.1| DNA primase [Escherichia coli O55:H7] gi|168983705|dbj|BAG11731.1| DNA primase [Escherichia coli O55:H7] gi|168986105|dbj|BAG11734.1| DNA primase [Escherichia coli O55:H6] gi|168986107|dbj|BAG11735.1| DNA primase [Escherichia coli O55:H6] gi|168986109|dbj|BAG11736.1| DNA primase [Escherichia coli O55:H6] gi|258642957|gb|ACV86042.1| DNA primase [Shigella flexneri] gi|294855365|gb|ADF44620.1| DNA primase [Escherichia sp. TW09231] gi|294855377|gb|ADF44626.1| DNA primase [Escherichia sp. TW14182] gi|294855379|gb|ADF44627.1| DNA primase [Escherichia albertii TW11588] gi|294855407|gb|ADF44641.1| DNA primase [Escherichia sp. TW14263] gi|294855409|gb|ADF44642.1| DNA primase [Escherichia sp. TW14264] gi|294855411|gb|ADF44643.1| DNA primase [Escherichia sp. TW14265] gi|294855413|gb|ADF44644.1| DNA primase [Escherichia sp. TW14266] gi|294855415|gb|ADF44645.1| DNA primase [Escherichia sp. TW14267] gi|294855437|gb|ADF44656.1| DNA primase [Escherichia coli] gi|294855439|gb|ADF44657.1| DNA primase [Escherichia fergusonii] Length = 148 Score = 77.2 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148 >gi|295108029|emb|CBL21982.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162] Length = 206 Score = 77.2 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + I + Y V + ACCPFH+++ PS N+ +++CF C Sbjct: 5 ETIKAAISVKQAAEHY-GLK------VSHNGMACCPFHNDRHPSLKLNED--YFFCFGCG 55 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 KGD + ++ L S E+ Q+L A G+ K K Sbjct: 56 AKGDVIDLVARLFDLSSYEAAQKLDADFGLDPKPPTAAAMVKPKR 100 >gi|282877487|ref|ZP_06286306.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC 35310] gi|281300373|gb|EFA92723.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC 35310] Length = 296 Score = 77.2 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 10/88 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ T +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LQQQGYSPTRIQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 F GD + + L C+ E+++ L Sbjct: 56 FGTGEHGDIIDLVRTLQHCTMYEAIELL 83 >gi|294855347|gb|ADF44611.1| DNA primase [Escherichia sp. B827] gi|294855353|gb|ADF44614.1| DNA primase [Escherichia sp. H442] gi|294855357|gb|ADF44616.1| DNA primase [Escherichia sp. TW10509] gi|294855359|gb|ADF44617.1| DNA primase [Escherichia sp. TW11930] gi|294855361|gb|ADF44618.1| DNA primase [Escherichia sp. TW11966] gi|294855443|gb|ADF44659.1| DNA primase [Escherichia fergusonii] Length = 148 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESSVSRPVPQLKR 148 >gi|294855349|gb|ADF44612.1| DNA primase [Escherichia sp. E1492] gi|294855351|gb|ADF44613.1| DNA primase [Escherichia sp. E807] Length = 148 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKATESSVSRPVPQLKR 148 >gi|224010756|ref|XP_002294335.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220969830|gb|EED88169.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 910 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 126/319 (39%), Gaps = 39/319 (12%) Query: 199 YDRFRNRLIFPIRSSRGQ-VIAFGGRTLSKGE---------SVKYLNSPETILFHKGKNL 248 DRFR+RL+ PI GQ VI FGGR L KY+NSP++ +F K L Sbjct: 1 MDRFRSRLMIPILDKSGQHVIGFGGRHLESNHGDEEEKSFTPAKYINSPDSPVFTKKFIL 60 Query: 249 YNFFGALNYLQKSIRKDVRRNSSS-----------FIILVEGYMDVLSLCQAGVQNVVSS 297 +N A + + ++ +++VEGY D ++L GV++VV+S Sbjct: 61 FNEHKAKVAIGEKSKRTSVEREGDPSLLKALDKTPPVVIVEGYFDAIALSNVGVKSVVAS 120 Query: 298 LGTALTEYQLRLLWKLSP----RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL- 352 +GTAL QL++ ++ RI+LC DGDD G A + + P N + Sbjct: 121 MGTALPVEQLKIASDMADIPGGRIILCMDGDDAGKNAVERICSSNILTKTPELNRNEIYV 180 Query: 353 ---LSRGEDPDSFIR-----CYGKTAFE-KLIVESLPLVDMLWKRETENRSFNTPD---- 399 +DP F+ K F+ +++ + P D +R + + D Sbjct: 181 ATLPDEVKDPSDFVDYAGGGSKAKERFDIEVMDTAQPWDDWYVERILSRYNADAKDGADG 240 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 + L + + + + R I + L L K +S + Sbjct: 241 SFSTLCDEVSSFLATFTNPADRTRRVYNIAEMLVDLIVKDSDRNSSSLGMMRVQMESDIL 300 Query: 460 KGPSQRLMQSSLVKGKLSK 478 S++ ++ ++ + Sbjct: 301 NMASRKASVRESMERRIEQ 319 >gi|331091851|ref|ZP_08340683.1| hypothetical protein HMPREF9477_01326 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402750|gb|EGG82317.1| hypothetical protein HMPREF9477_01326 [Lachnospiraceae bacterium 2_1_46FAA] Length = 224 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 18/99 (18%) Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 + R ACCPFH ++ PS + Y+CF+C V GD + F + L G S Sbjct: 22 IKVKRNG--------MACCPFHKDRHPSM---KADKIYHCFACGVGGDAIDFTARLFGIS 70 Query: 85 FIESVQRLAAIAGVPL-------PVVDPKIEKKEKIQTD 116 E+ ++L G+ + P+ K + Sbjct: 71 QYEAAKKLVEDFGLDIKVGNRSKYERTPRSRASLKQKQS 109 >gi|260687126|ref|YP_003218260.1| hypothetical protein CDR20291_1769 [Clostridium difficile R20291] gi|306521672|ref|ZP_07408019.1| hypothetical protein CdifQ_19545 [Clostridium difficile QCD-32g58] gi|260213143|emb|CBE04576.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 186 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 10/79 (12%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----- 96 CCPFHD+K PS + ++CF C GD + F + L G + ++ +LA Sbjct: 3 CCPFHDDKHPSMKVDR---RFHCFGCQADGDVIDFTARLFGLNKKDAALKLAEDFSVGFD 59 Query: 97 --GVPLPVVDPKIEKKEKI 113 G P P K + Sbjct: 60 AKGHDPPRRKPGKRKISEE 78 >gi|182624879|ref|ZP_02952658.1| CHC2 zinc finger domain protein [Clostridium perfringens D str. JGS1721] gi|177909885|gb|EDT72295.1| CHC2 zinc finger domain protein [Clostridium perfringens D str. JGS1721] Length = 543 Score = 77.2 bits (188), Expect = 8e-12, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 10/104 (9%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 + + IP+ ++ + V + C EKTPS N K ++Y F Sbjct: 195 LDKIKE-IPLEDVCNRLGVHTSPKGKKLW-------CDIRGEKTPSCCINTDKNYWYDFG 246 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110 GD + F+S + + E++ RLA + G+ P + + + K Sbjct: 247 SSTGGDVIKFVSEVEKINAKEAIYRLADMFGIE-PENNIENQNK 289 >gi|294855423|gb|ADF44649.1| DNA primase [Escherichia albertii] Length = 148 Score = 77.2 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLIPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESVVSRPVPQLKR 148 >gi|301057719|ref|ZP_07198792.1| zinc-binding domain of primase-helicase [delta proteobacterium NaphS2] gi|300448180|gb|EFK11872.1| zinc-binding domain of primase-helicase [delta proteobacterium NaphS2] Length = 363 Score = 77.2 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 59/395 (14%), Positives = 111/395 (28%), Gaps = 61/395 (15%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK----GFYYCFSCHVKG 71 + +LI +Y + + + G+Y + CP K FH + G ++C C G Sbjct: 3 KVIDLIRKYHEPTKV-ASTNGGEYHSPCPGCGGKD-RFHVWPEENQGEGSWWCRQCGKGG 60 Query: 72 DHLSFLSALLGCSFIESVQRLA----AIAGVPLPVVDPKIEKKEKIQTDLIR-------L 120 D + FL G +F E+ +RL I+ P V +K E++ Sbjct: 61 DAIQFLRDFEGLTFREACERLGKTPREISNHENPWVHKDQKKPEEVWRPDPEQGPPPEIW 120 Query: 121 IEVATDF----FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 + A F F + + + + L RGI+ I+ F LG+ P + R+ Sbjct: 121 RKKARKFVNWAFENLILMDSGEGIKARLFRRGINEWVIKHFGLGWNPGNEGKDLFRPRES 180 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 ++ G + ++ R + L Sbjct: 181 WGLPTELKPDGHKKKLWIPSGLVIP---------HLVGKEIHRIRIRRENGDPKYYVLPG 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL-------CQA 289 + + + S +LVE +D + + + Sbjct: 232 SSMNCLVEDC--------------GVPQLQWPLGSRCYVLVEAELDAMMIRYWANRGHEM 277 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN 349 + + L + I+ D D G R + + Sbjct: 278 TGVVALGNSSRKPDAKTTDFLKNAAL-ILNALDFDPAGARQIKWWRENFP-------QSK 329 Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384 + G+DP + I P Sbjct: 330 RWPVPIGKDPGEAFEQGVP--IQNWIKAGQPKGWF 362 >gi|294855421|gb|ADF44648.1| DNA primase [Escherichia albertii] gi|294855425|gb|ADF44650.1| DNA primase [Escherichia albertii] gi|294855427|gb|ADF44651.1| DNA primase [Escherichia albertii] gi|294855429|gb|ADF44652.1| DNA primase [Escherichia albertii] gi|294855431|gb|ADF44653.1| DNA primase [Escherichia albertii] gi|294855433|gb|ADF44654.1| DNA primase [Escherichia albertii] Length = 148 Score = 76.8 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESVVSRPVPQLKR 148 >gi|294855355|gb|ADF44615.1| DNA primase [Escherichia sp. M863] Length = 148 Score = 76.8 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKTAESSVSRPVPQLKR 148 >gi|319644360|ref|ZP_07998833.1| TraP protein [Bacteroides sp. 3_1_40A] gi|317384157|gb|EFV65131.1| TraP protein [Bacteroides sp. 3_1_40A] Length = 300 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 9/101 (8%) Query: 5 RDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I + IP+++ + + + R + W P+ E+TPSF N +K + Sbjct: 3 QTEIDAIRQ-IPLADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKQLW 56 Query: 63 YCFSCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGVPLPV 102 Y F GD + F+E + +A A + + Sbjct: 57 YDFGLGKGGDIFTLAGEFAQSVDFMEQARFIAKAANMVVDR 97 >gi|294855435|gb|ADF44655.1| DNA primase [Escherichia coli] Length = 148 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 67/147 (45%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + ++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MERAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148 >gi|295090425|emb|CBK76532.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 215 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 3/77 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFHD+ PS + YYCF+C VKGD + F S L G S E+ Q+L G+P Sbjct: 29 MACCPFHDDHHPSMKID---QNYYCFACGVKGDVIDFTSRLFGISQFEAAQKLITDFGLP 85 Query: 100 LPVVDPKIEKKEKIQTD 116 + K + + Sbjct: 86 IRSEKRKHAPGKSRNRE 102 >gi|258642959|gb|ACV86043.1| DNA primase [Shigella flexneri] Length = 148 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 67/147 (45%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + K Sbjct: 122 LDDXQXERLMPKAAESGVSRPVPQLKR 148 >gi|168210936|ref|ZP_02636561.1| CHC2 zinc finger domain protein [Clostridium perfringens B str. ATCC 3626] gi|170710977|gb|EDT23159.1| CHC2 zinc finger domain protein [Clostridium perfringens B str. ATCC 3626] Length = 625 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 12/119 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + IP+ ++ R N C EKTPS N K ++Y F Sbjct: 277 LDKIKE-IPLEDVCN------RLGVNTSSKGKKLWCNIRGEKTPSCCINIDKNYWYDFGT 329 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 GD + F+S + + E++ RLA + G+ DP+ K + +L Sbjct: 330 STGGDVIKFVSEVEKINTKEAIYRLADMFGI-----DPENNIPNKNKFNLYISNSDYRK 383 >gi|238026043|ref|YP_002910274.1| Zinc finger protein, CHC2-type [Burkholderia glumae BGR1] gi|237875237|gb|ACR27570.1| Zinc finger protein, CHC2-type [Burkholderia glumae BGR1] Length = 931 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 8/108 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R + Y P HD+K+PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S G + + G + ++V+ L G+PL P +++ Sbjct: 60 DHSADAGGSCIDLVIHARGGTVADAVRYLHDTYGIPLDRQAPAERREK 107 >gi|171316505|ref|ZP_02905722.1| zinc finger CHC2-family protein [Burkholderia ambifaria MEX-5] gi|171098339|gb|EDT43144.1| zinc finger CHC2-family protein [Burkholderia ambifaria MEX-5] Length = 931 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R + Y P HD+K+PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S V G + + G + ++V+ L G+PL P +++ Sbjct: 60 DHSADVGGSCIDLVIHTRGGTVADAVRYLHDAYGIPLDRQGPAERREK 107 >gi|166033475|ref|ZP_02236304.1| hypothetical protein DORFOR_03201 [Dorea formicigenerans ATCC 27755] gi|166026660|gb|EDR45417.1| hypothetical protein DORFOR_03201 [Dorea formicigenerans ATCC 27755] Length = 212 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +K+PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85 Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +K +K + +++ TD+FH L +K+ + Sbjct: 86 YDSRQKPSVRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140 Query: 149 IDS 151 + Sbjct: 141 WNP 143 >gi|168206962|ref|ZP_02632967.1| CHC2 zinc finger domain protein [Clostridium perfringens E str. JGS1987] gi|170661629|gb|EDT14312.1| CHC2 zinc finger domain protein [Clostridium perfringens E str. JGS1987] Length = 625 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 7/94 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 + + IP+ ++ R N C EKTPS N K ++Y F Sbjct: 277 LDKIKE-IPLEDVCN------RLGVNTSFKGKKLWCNIRGEKTPSCCINIDKNYWYDFGT 329 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F+S + + E++ +LA + G+ Sbjct: 330 SKGGDVIKFVSEVEKINSKEAIYKLADMFGIEPE 363 >gi|254445996|ref|ZP_05059472.1| CHC2 zinc finger, putative [Verrucomicrobiae bacterium DG1235] gi|198260304|gb|EDY84612.1| CHC2 zinc finger, putative [Verrucomicrobiae bacterium DG1235] Length = 119 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 9/111 (8%) Query: 1 MN--YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCND 57 M + I+ L + + +L+ + + R Y A PF P + N Sbjct: 1 MKKIIKKSSIEALKRQVSLLDLLSEDMQLTRVG-----DYYVAPSPFVP-TNPVTLCVNC 54 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108 + C + GD + +L FI +V+ LA G L P Sbjct: 55 HVNRWRCTATGKHGDAIEYLKLAYRLPFIAAVEWLAKRYGFRLEYEGPTGA 105 >gi|281426344|ref|ZP_06257257.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] gi|281399522|gb|EFB30353.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] Length = 296 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 62/215 (28%), Gaps = 19/215 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LLQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLIEV 123 F GD + + L C+ E+++ L + E+K ++I + + Sbjct: 56 FGTGEHGDIIDLVRTLQHCTMYEAIELLIGSKQIVHQDFSFGGERKTSKHKLEIISVQSL 115 Query: 124 ATDF---FHHSLKNARDKRLH-YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + + D + + Sbjct: 116 TNPYLLRYIAERGVPLSIANRFCSQIRYNNTNRTYYAIGFANDADGWEIRSPYFKG---- 171 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 + G + ++ F + L + + Sbjct: 172 CIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNPS 206 >gi|294855441|gb|ADF44658.1| DNA primase [Escherichia fergusonii] Length = 148 Score = 76.5 bits (186), Expect = 1e-11, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 68/147 (46%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +S+PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQSMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESSVSRPVPQLKR 148 >gi|118579553|ref|YP_900803.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379] gi|118502263|gb|ABK98745.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379] Length = 277 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 8/100 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + + +L I L+ + + T+ V + C +HD+ PS S Sbjct: 1 MGLDK---EKILASTDIPTLVRELLPEMKPVGTDQVLVN----CVYHDDSNPSMSVQLST 53 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 G + C C G + G F + +A AG+ Sbjct: 54 GLHNCRGCGTTGTLFDLVMKCRGLDFAAACAWMAERAGLK 93 >gi|221214611|ref|ZP_03587581.1| conserved hypothetical protein [Burkholderia multivorans CGD1] gi|221165501|gb|EED97977.1| conserved hypothetical protein [Burkholderia multivorans CGD1] Length = 931 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R K Y P H++K PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGNKALYH--SPQHEDKNPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S V G + + + G + ++V+ L G+PL P +++ Sbjct: 60 DHSAGVGGSCIDLVIYVRGGTVADAVRYLHDAYGIPLDRSAPTERREK 107 >gi|226322835|ref|ZP_03798353.1| hypothetical protein COPCOM_00607 [Coprococcus comes ATCC 27758] gi|225208816|gb|EEG91170.1| hypothetical protein COPCOM_00607 [Coprococcus comes ATCC 27758] Length = 212 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +K+PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85 Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +K +K + +++ TD+FH L +K+ + Sbjct: 86 YDSRQKPSIRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140 Query: 149 IDS 151 + Sbjct: 141 WNP 143 >gi|257438341|ref|ZP_05614096.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257199172|gb|EEU97456.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 212 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 19/123 (15%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +K+PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAKDFGLN 85 Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +K +K + +++ TD+FH L +K+ + Sbjct: 86 YDSRQKPSVRPRIREPTPEQKYQKEENHCYKVL---TDYFH--LLREWEKKYAPKQPDEE 140 Query: 149 IDS 151 + Sbjct: 141 WNP 143 >gi|167813644|ref|ZP_02445324.1| hypothetical protein Bpse9_00814 [Burkholderia pseudomallei 91] Length = 930 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R K Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|134288779|ref|YP_001111042.1| gp11, conserved hypothetical protein [Burkholderia phage phiE202] gi|134131992|gb|ABO60740.1| gp11, conserved hypothetical protein [Burkholderia phage phiE202] Length = 930 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R K Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|53717771|ref|YP_106757.1| hypothetical protein BPSL0130 [Burkholderia pseudomallei K96243] gi|52208185|emb|CAH34116.1| conserved hypothetical phage protein [Burkholderia pseudomallei K96243] Length = 930 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R K Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|254197111|ref|ZP_04903534.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|169653853|gb|EDS86546.1| conserved hypothetical protein [Burkholderia pseudomallei S13] Length = 930 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R K Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|72537680|ref|YP_293710.1| hypothetical protein BPSphi5223_0004 [Burkholderia phage phi52237] gi|72398370|gb|AAZ72605.1| conserved hypothetical phage protein [Burkholderia phage phi52237] Length = 930 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R K Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|310829517|ref|YP_003961874.1| DNA primase [Eubacterium limosum KIST612] gi|308741251|gb|ADO38911.1| DNA primase [Eubacterium limosum KIST612] Length = 237 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 11/108 (10%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 R + I Y + DR A CPFH + PS D + Sbjct: 6 RSIFDVVREETNIVTAARFYGMAVDRHGR--------ALCPFHSDHHPSLSFKD--NRFT 55 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 CF+C +G + + + S +E+ +L + + V + + Sbjct: 56 CFACGARGSVIDLVMQIFHISPLEAAVKLQEDFNLKVEVRGQSHKAND 103 >gi|300214612|gb|ADJ79028.1| DNA primase [Lactobacillus salivarius CECT 5713] Length = 210 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 23/219 (10%), Positives = 73/219 (33%), Gaps = 16/219 (7%) Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRY--WKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + R + ++ ++ + +Q +Q++ ++ + K ++ Sbjct: 1 MEQDLYLNRLAQRFNVAKENLDSQLRQIREKIFAQRAEKQEEQSYQAQQIPRTVIQKNEV 60 Query: 477 S--KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E LL +++ + + D + + Q +++ + F + Sbjct: 61 QHFSKAEKAERLLLYRMLHDKNVWLRI-NGIPDFNFIHENYQVIYNLSEAYFDTHDEYEV 119 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + E G +++ L+ + Q L+L L + Sbjct: 120 ADFLDFINEDGLRQVVVTLEM-----------GDYADEVSEQEINDCLSLIMSQTPLEDK 168 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++++ ++ + + + K L L + + +S Sbjct: 169 IKKVQTEMLEAKRQNDTAKITKLTMDLISLLKEQQNAKS 207 >gi|167561041|ref|ZP_02353957.1| hypothetical protein BoklE_00679 [Burkholderia oklahomensis EO147] Length = 110 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%) Query: 6 DFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF- 61 I +L I + +L + R + Y P H++K+PS G Sbjct: 2 ATIDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHEDKSPSLSIYVNHPKHGTG 57 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + S G + + G + ++V+ L G+PL P +++ Sbjct: 58 WRDHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREKS 108 >gi|294855363|gb|ADF44619.1| DNA primase [Escherichia sp. B1147] Length = 148 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ +DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +R GK AFE Sbjct: 2 NNVICWYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNTLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148 >gi|312136013|ref|YP_004003351.1| toprim domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776064|gb|ADQ05551.1| TOPRIM domain-containing protein [Caldicellulosiruptor owensensis OL] Length = 367 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 62/404 (15%), Positives = 135/404 (33%), Gaps = 53/404 (13%) Query: 3 YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPS---FHCNDS 58 + + ++ + + L+ V + R CPFH + + N Sbjct: 2 ISKRIERTVIRNTNVVELLENLDVSYKRYGDEVRIV-----CPFH--RNANGYNLSINVK 54 Query: 59 KGFYYCF--SCHVKG-DHLSFLSALLGCSFIE-SVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 K + CF C G + + + ++ E +V+ +A++A + + ++ I K Sbjct: 55 KRVFCCFSNGCEKNGYNLVDLVMRIMKTDDRERTVRYMASLANLEIDLLCRNIMKYSYKN 114 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + +D L + + R ++ + ++ + Sbjct: 115 KK--------------GLLSFKDSTLSFIREFRTVEEEGEYVVYQESQIREWHNALLESK 160 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 + + + ++ +IFP+ S+ G++ A RTLS+ ++ + Sbjct: 161 YPLRYLTEERKLTEWDIENFYLGFDPEEKD-IIFPVYSTEGKLKAVVRRTLSEEKAEYF- 218 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 ++ K + LY + A + IILVEG D ++L + G V Sbjct: 219 -GKYKVIGAKSECLYGLYEAQGA----------DYDLNKIILVEGVFDAIALHRMGYTAV 267 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGD----DPGLRAAYKAIDLVLCHLIPGNR--- 347 + L I+LC D D D + ++ G Sbjct: 268 ALLGTSISKYQLKMLYELSPAEIILCLDNDSCKGDDENSGKNGVLRIINQFSKAGFNLDE 327 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 ++ + L +DPD + F ++ +P +D ++ Sbjct: 328 ISVIQLDGYQDPDEV----PEKEFRRIYENRMPAIDFYLTQQIR 367 >gi|218281845|ref|ZP_03488184.1| hypothetical protein EUBIFOR_00752 [Eubacterium biforme DSM 3989] gi|283795126|ref|ZP_06344279.1| DNA primase [Clostridium sp. M62/1] gi|218217134|gb|EEC90672.1| hypothetical protein EUBIFOR_00752 [Eubacterium biforme DSM 3989] gi|291076770|gb|EFE14134.1| DNA primase [Clostridium sp. M62/1] Length = 212 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +K+PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 MACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85 Query: 100 LPVVDPKIEKKE 111 + Sbjct: 86 YDSRQKPSVRPR 97 >gi|210613633|ref|ZP_03289792.1| hypothetical protein CLONEX_01999 [Clostridium nexile DSM 1787] gi|210151063|gb|EEA82071.1| hypothetical protein CLONEX_01999 [Clostridium nexile DSM 1787] Length = 208 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 19/123 (15%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFH++K PS + ++CF C GD + F+S L G E+ ++A G+ Sbjct: 29 MAVCPFHNDKNPSMKLDR---RFHCFGCQADGDAVDFVSRLFGLPSKEAAMKIADDFGIS 85 Query: 100 LPVVDP-----------KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +K ++ + +++ +D+FH L +K+ + Sbjct: 86 YDSRQKPSIRPKIREPTPEQKYQQEENHCYKVL---SDYFH--LLRKWEKQYAPQRTDEV 140 Query: 149 IDS 151 Sbjct: 141 WHP 143 >gi|282858524|ref|ZP_06267696.1| CHC2 zinc finger domain protein [Prevotella bivia JCVIHMP010] gi|282588709|gb|EFB93842.1| CHC2 zinc finger domain protein [Prevotella bivia JCVIHMP010] Length = 296 Score = 75.7 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 19/215 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LQQQGYSPARIQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT-DLIRLIEV 123 F GD + + L C+ E++ L + E+K ++I + + Sbjct: 56 FGTGEHGDIIDLVRTLQHCTMYEAIDFLIGSKQIVHQDFSFGGERKTSKHKLEIISVQSL 115 Query: 124 AT----DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + + D + + Sbjct: 116 TNPYLLRYIAERGISLSIANRFCSEIRYNNTNRTYYAIGFANDADGWEIRSPYFKG---- 171 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 + G + ++ F + L + + Sbjct: 172 CIAPKAITTISKGTDVLQIFEGFMDFLSWQTLNPS 206 >gi|323527811|ref|YP_004229964.1| Toprim sub domain-containing protein [Burkholderia sp. CCGE1001] gi|323384813|gb|ADX56904.1| Toprim sub domain-containing protein [Burkholderia sp. CCGE1001] Length = 930 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I++L I + +L + R K Y P H++K+PS G + Sbjct: 4 IEELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDKSPSLSVYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 S G + + G + ++++ L G+PL +P +++ Sbjct: 60 DHSADKGGSCIDLVIHARGGTVADALRYLHDAYGIPLDRPEPAERREKS 108 >gi|48696464|ref|YP_024506.1| putative primase [Staphylococcus phage K] gi|66394975|ref|YP_240942.1| ORF026 [Staphylococcus phage G1] gi|37729158|gb|AAO47525.1| ORF76 [Staphylococcus phage K] gi|62636997|gb|AAX92108.1| ORF026 [Staphylococcus phage G1] gi|119658112|gb|ABL87147.1| putative primase [Staphylococcus phage 812] gi|182627936|gb|ACB89098.1| gp ORF105 [Staphylococcus phage A5W] Length = 355 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 113/352 (32%), Gaps = 42/352 (11%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHC----NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87 G+ CCPF EK+ F+ + S G Y+C C G+ ++F+ + + Sbjct: 15 KENTIGELRYCCPFCGEKSYKFYVKQALDSSNGQYHCKKCDESGNPITFMKTYYNITGKQ 74 Query: 88 SVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 + L + + + K LI ++ H K + + Sbjct: 75 AFDLLESK-NIDIERAPLLTTNNKDLTESEKLILMLRGV-----HQDKGNTSIKPPRLPE 128 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 + + ++ L Q + + G D + RN Sbjct: 129 GYKLLKDNLNNKEIIPFLKYLKGRGITLEQIINNNIGYVINGSFYKVDGESK--VSLRNS 186 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK-NLYNFFGALNYLQKSIRK 264 +IF + G + R++ K +K +N+P K ++N A Sbjct: 187 IIFFTYDNDGNYQYWNTRSIEKNPYIKSINAPAKQDEVGRKDVIFNLNIARK-------- 238 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL---SPRIVLCF 321 F+++ EG D L+ + V++LG +TE Q++ + I + Sbjct: 239 ------KKFLVITEGVFDALTFH----EYGVATLGKQVTENQIKKIIDYVSIDTSIYIML 288 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D D IDL N+V FV ED + ++ Sbjct: 289 DTDALDNN-----IDLAYKLKTHFNKVYFVPHGD-EDANDMGTRKAFELLKQ 334 >gi|265751714|ref|ZP_06087507.1| TraP protein [Bacteroides sp. 3_1_33FAA] gi|263236506|gb|EEZ21976.1| TraP protein [Bacteroides sp. 3_1_33FAA] Length = 292 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%) Query: 10 DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 D++ +PI+ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 7 DIIRQMPIAVFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVD 104 GD + F+E V+ +A A +P+PV + Sbjct: 62 GKGGDIFTLAGEFARSGDFMEQVKFIAGTANIPMPVPE 99 >gi|237742426|ref|ZP_04572907.1| predicted protein [Fusobacterium sp. 4_1_13] gi|229430074|gb|EEO40286.1| predicted protein [Fusobacterium sp. 4_1_13] Length = 574 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 41/359 (11%), Positives = 93/359 (25%), Gaps = 36/359 (10%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85 ++ N K + P H++K PS K CF+C D + +F Sbjct: 238 LQKKGIN-TKELFRCISPDHEDKNPSMSFYTKKNKCTCFACGKNYDIFDLVKMEYGLKTF 296 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 E +++ + + E + + + L + +K Sbjct: 297 PEQLKK--------VEEFMKNPDLIEDANKTIYSKKNTSIE-----LGSNIEKNKSTSNK 343 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 + +D + + Y K I + F+ Sbjct: 344 KSVLDPNNPNDIE-RIIKYQNYIKYCMSNLKECDYLTKRGISEKIQKEYHIGYDPNFKYA 402 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265 R + + +FH + Sbjct: 403 SFNKAIIIPTYYGCLTARNIDDNSKDRLRKLGNAQIFHYDRI------------------ 444 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 + N +VEG +D LS+ + G + + + +L + +D Sbjct: 445 -KENPGKEFYIVEGEIDALSVAEVGKKAIALGSVNEINLLVNKLKKDKFKNKFILMLDND 503 Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384 + A + + + L + +L + +DP+ F+ + + + Sbjct: 504 EIGKKAQEILYIRLKEIGINVE-KSNILGKYKDPNEFLMKDREKFLALFQKKERENLWQ 561 >gi|319654116|ref|ZP_08008206.1| hypothetical protein HMPREF1013_04826 [Bacillus sp. 2_A_57_CT2] gi|317394201|gb|EFV74949.1| hypothetical protein HMPREF1013_04826 [Bacillus sp. 2_A_57_CT2] Length = 463 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 93/296 (31%), Gaps = 38/296 (12%) Query: 2 NYPRDFIKDLLIHIPIS---NLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 I+ + + + ++G ++ + E TPS N + Sbjct: 3 RISEVTIQKVKE-VDLVFLAEMLGD--PLNKVGHSYFTYRNEG------ENTPSLAINPT 53 Query: 59 KGFYYCFSCHVKG-DHLS-FLSAL-------LGCSFIESVQRLAAIAGVPLPVVDPKIEK 109 KG + F+ G D +S F + G FIE+V+++ + G+ + D + + Sbjct: 54 KGIWKDFAGTAGGRDAISYFYYRVKQSNSYPKGMDFIETVEKICELCGITIEYEDGQSRE 113 Query: 110 ----KEKIQTDLIRLIEVA-----TDFFHHSLK--NARDKRLHYYLDERGIDSHAIEMFK 158 + K + ++R + A + + LK + + + R I + ++ + Sbjct: 114 FKQVEYKPREVIVRASDKAPIERLHEVYSSILKELSLHKSHYMHLKEVRKITAPYAKIRE 173 Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 + + + + + Y R I + Sbjct: 174 YRSFVQDKKERYLKTKAIKRAAGSLEGIPGFAEMKGQYGLYWSMIGRAGMLIPFRNIRNQ 233 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274 G + + + +F K + + + ++KS + + ++ + Sbjct: 234 IAGFQVMYDERPELVTAEGDLRVFMKD------YHSFSIIRKSTGEIIGESNRDQL 283 >gi|169839328|ref|ZP_02872516.1| DNA primase [candidate division TM7 single-cell isolate TM7a] Length = 255 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 52/256 (20%), Positives = 105/256 (41%), Gaps = 16/256 (6%) Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 + ++VEG +DV+S QAG+ VV++ GTA+T + L+++ + S I L FD Sbjct: 1 AKESIRQHDYAVIVEGNIDVVSSHQAGINYVVATAGTAMTIHHLKIIGRFSKNIRLAFDS 60 Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIVESLPLV 382 D GL A +AI + G ++ + L +DPD I+ ++ I P V Sbjct: 61 DKAGLAATERAISIAQ---EAGIDLSVISLPDYAKDPDELIQ-RDPKLWQGAIDAYEPAV 116 Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + ++ +N +T + I++++D R +Y + + ++++ + + Sbjct: 117 DWILRQYYKNNDISTAAGKRAYTTAGLAVIHNLQDPVERDHYLRKMAEKIETDIEVLRAK 176 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 + R + + K ++ E LL I + + Sbjct: 177 MKN-----------NSDTEIAHRKVVKVNPQNKSTQSEFELEDNLLALGITNKYVCDLIL 225 Query: 503 QELADIRYDNNELQKL 518 E +I +N+ + Sbjct: 226 NEPIEIFRGDNQYNLV 241 >gi|168983707|dbj|BAG11732.1| DNA primase [Escherichia coli O55:H7] gi|168986103|dbj|BAG11733.1| DNA primase [Escherichia coli O55:H7] Length = 148 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 67/147 (45%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 ++ C+DGD G AA++A++ L ++ G ++ F+ L EDPD+ +R GK AFE Sbjct: 2 NNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDDEDPDTLVRKEGKEAFEAR 61 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + +++PL L+ +TPD RA L I+ + + LR Y Q + ++L Sbjct: 62 MEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGI 121 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKG 461 L + + K Sbjct: 122 LDDSQLERLMPKAAESGVSRPVPQLKR 148 >gi|315650308|ref|ZP_07903380.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315487419|gb|EFU77729.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 901 Score = 75.3 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 65/222 (29%), Gaps = 16/222 (7%) Query: 1 MNYPRDFIKDLLI-HIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M I L+ S +I +Y N CPFHD+K SF + Sbjct: 1 MRVDEVDIDHLVDYKTEYSRIIPKY---KISGDNLT-----GLCPFHDDKNNSFSVDLKT 52 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G + C + G+ SF + L G E+ + + G K E+ +K + L+ Sbjct: 53 GCWKCHAEDRGGNFTSFYAELNGIDTKEAYKAILKKYG------AYKAEEDKKPEGSLLS 106 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 VA L K ++ + R+ K F Sbjct: 107 -YSVAQYVLEKRLPEEFLKEQCCLQTKKDKQGIQYLYIPYFNENSDEVTYRKRYGNKQFR 165 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 + + + G+ ++ S + G Sbjct: 166 WKYGAGKDICMYGEWKLEQIRTAGYVVLVEGESDSQSMWYMG 207 >gi|295108179|emb|CBL22132.1| DNA primase (bacterial type) [Ruminococcus obeum A2-162] Length = 212 Score = 74.9 bits (182), Expect = 3e-11, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH +K+PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 IACCPFHSDKSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85 Query: 100 LPVVDPKIEKKE 111 + Sbjct: 86 YDSRQKPSVRPR 97 >gi|313145958|ref|ZP_07808151.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313134725|gb|EFR52085.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 297 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + I +++ + + + + + N + Y A P+ +E+TPSF N +K +Y F Sbjct: 10 IDTMRQ-ISLADFLAR-LGHEPVRRNGNELWYRA--PYRNERTPSFRVNVAKQLWYDFGL 65 Query: 68 HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPV 102 GD + + F+E V+ +A A + + Sbjct: 66 GKGGDIFTLAGEFIRSGDFMEQVRFIANAANMTVDR 101 >gi|255008239|ref|ZP_05280365.1| hypothetical protein Bfra3_03806 [Bacteroides fragilis 3_1_12] Length = 293 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 5/96 (5%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + I +++ + + + + + N + Y A P+ +E+TPSF N +K +Y F Sbjct: 6 IDTMRQ-ISLADFLAR-LGHEPVRRNGNELWYRA--PYRNERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPV 102 GD + + F+E V+ +A A + + Sbjct: 62 GKGGDIFTLAGEFIRSGDFMEQVRFIANAANMTVDR 97 >gi|161521410|ref|YP_001584837.1| zinc finger CHC2-family protein [Burkholderia multivorans ATCC 17616] gi|189352422|ref|YP_001948049.1| probable bacteriophage protein [Burkholderia multivorans ATCC 17616] gi|327198000|ref|YP_004306368.1| gp2 [Burkholderia phage KS5] gi|160345460|gb|ABX18545.1| zinc finger CHC2-family protein [Burkholderia multivorans ATCC 17616] gi|189336444|dbj|BAG45513.1| probable bacteriophage protein [Burkholderia multivorans ATCC 17616] gi|310657134|gb|ADP02249.1| gp2 [Burkholderia phage KS5] Length = 931 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R K Y P H++++PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGDKALYH--SPQHEDRSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S V G + + G + ++V+ L G+PL P +++ Sbjct: 60 DHSAGVGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRPAPAERREK 107 >gi|167724583|ref|ZP_02407819.1| DNA primase [Burkholderia pseudomallei DM98] Length = 298 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 54/312 (17%), Positives = 104/312 (33%), Gaps = 31/312 (9%) Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRET 390 A +A++ L H + F+ L DPDS++R +G AF + + ++PL L T Sbjct: 2 ARRALEACLPHAADNRTIRFLFLPPEHDPDSYVREFGTDAFSEQVKRAMPLSQFLLNEAT 61 Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 + + P+ RA+ K + + LR DRLQ F + R Sbjct: 62 AGKELDQPEGRAKALFDAKPLLQALPANALRAQIMHMFADRLQIPFDEVAALAEVDARIA 121 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 ++ + E L L+ HP I E Sbjct: 122 A---------------PARQAPARNERRRVTESEKRALRNLVMHPRIAAAIDDESVATLR 166 Query: 511 DNNELQKLWSFLFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL---DRQVRDAGL 562 + +L+ + L + + + E+ +++ D VRD Sbjct: 167 ALPRIGELFDEVIGHARALGDGAEFRLLSDVLRNSANAPTYDEIFREILVYDENVRDLMQ 226 Query: 563 WSATTEANIVDVRQGYQ------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + ++A +R+ + QA L R+ + + K+ + E + Sbjct: 227 QNPESDAAQEGLRERERIAGEELQAAVLKMRYDACCDRLNSLSKR--SAPSSEELAEIKD 284 Query: 617 LISILHEVHIQI 628 L L ++ ++ Sbjct: 285 LHQNLADMKRRL 296 >gi|255505538|ref|ZP_05346726.3| putative CHC2 zinc finger [Bryantella formatexigens DSM 14469] gi|255267119|gb|EET60324.1| putative CHC2 zinc finger [Bryantella formatexigens DSM 14469] Length = 916 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 67/187 (35%), Gaps = 14/187 (7%) Query: 15 IPISNLI------GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + I L+ Y+ +K CPFHD+K SF + G +YCF+ Sbjct: 5 VNIDQLVDYQTEYSSYI----KKHKITGDRLTGLCPFHDDKNNSFSADLKTGQWYCFAEG 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 G+ +F + L G S E+ +++ G L +P +K++ + L E A F Sbjct: 61 RGGNFTTFYAELNGISTDEAYKQILDKYG-ALRAPEPPQKKEKTPGPESYSLEEYA---F 116 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 + L K + + D + + R+ K F L Sbjct: 117 NKRLPVEFLKEVCGASTGKDKDKKSFLKLPYFNEEKTDPIFRKRYAHKEFRWSWGSSGKL 176 Query: 189 LIDGDNS 195 ++ GD Sbjct: 177 ILYGDWR 183 >gi|170731521|ref|YP_001763468.1| zinc finger CHC2-family protein [Burkholderia cenocepacia MC0-3] gi|169814763|gb|ACA89346.1| zinc finger CHC2-family protein [Burkholderia cenocepacia MC0-3] Length = 930 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 8/108 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + +L + R + Y P HD+K+PS G + Sbjct: 4 IDELKQRIDLHDL-ADRLGLKR-GRGGDRALYH--SPQHDDKSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S V G + + G + ++V+ L G+PL P +++ Sbjct: 60 DHSADVGGSCIDLVIHARGGTVADAVRYLHDAYGIPLDRQAPAERREK 107 >gi|9625488|ref|NP_039722.1| predicted 14.5Kd protein [Mycobacterium phage L5] gi|465296|sp|Q05271|VG58_BPML5 RecName: Full=Gene 58 protein; AltName: Full=Gp58 gi|15914|emb|CAA79434.1| gene 58 [Mycobacterium phage L5] Length = 130 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI--AG 97 CPFH ++TPS + Y C +C V+GD +S + +F E+ +R+A G Sbjct: 28 KCLCPFHGDETPSAAVSYDLQGYNCMACGVRGDVISIIRHEEEVTFAEA-KRIAENLSVG 86 Query: 98 VPLPVVDPKIEKKEKI 113 +PV K + Sbjct: 87 GNVPVQRKPARKPSRR 102 >gi|238909187|ref|YP_002939654.1| DNA primase [Eubacterium eligens ATCC 27750] gi|238873424|gb|ACR73133.1| DNA primase [Eubacterium eligens ATCC 27750] Length = 341 Score = 74.5 bits (181), Expect = 5e-11, Method: Composition-based stats. Identities = 68/378 (17%), Positives = 125/378 (33%), Gaps = 78/378 (20%) Query: 14 HIPISNLIGQ-----YVDWDRRK----TNAVKGDYWACCPFH---DEKTPSF------HC 55 PI + Q + D CPFH E PS Sbjct: 6 KTPIVATVEQVLKDLKLQLYGAGLLKEIKNTGSDLMCTCPFHANGKEHNPSCGVLLQQKV 65 Query: 56 NDSK----GFYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKK 110 K G +C++C D F++ LLG S E + L + Sbjct: 66 TKDKTYEAGTVHCYTCGYTADLPQFVADLLGLSSPVEGFKWLVNQYNYQTEERELPDLDM 125 Query: 111 EKIQTDLIRLIEVA-TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 + ++E + + +L + + YL +R I + +E ++LG+ P+ + Sbjct: 126 YRGSIAKSSVLEESLVKQYTQNLL--QSEEACRYLHKRRIANWVLEAYELGFDPEDKT-- 181 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 ++FP+R G+VI + GR+++ Sbjct: 182 ------------------------------------VLFPVRGMDGKVIFYKGRSIAGK- 204 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 + N+ E K ++ + + + + E +D LSL Sbjct: 205 --HFYNAKEV---DKTSVVFGL----WEILNGSFSWGTADQIEEVWITESEIDALSLISY 255 Query: 290 GVQNVVSSLGTALTEYQLRLL-WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 GV V+ +G+ ++E Q + L R VL D DD G + A + L+ + Sbjct: 256 GVP-AVAIMGSHISEEQCKELERTPFRRFVLATDNDDAGRKGASQIKRLL--IPKGFRFI 312 Query: 349 NFVLLSRGEDPDSFIRCY 366 N + +D + ++ Y Sbjct: 313 NLKWHTSLKDINDLVKEY 330 >gi|295102579|emb|CBL00124.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6] Length = 182 Score = 74.5 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH + PS ND+ +YYCF C GD + + L + ++ ++L G+ Sbjct: 13 CCPFHSDNHPSMMLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLIHDFGIDPD 70 Query: 102 VVDPKIEKKEKIQTDLIR 119 + L Sbjct: 71 KPPANAIALPPPKRGLTD 88 >gi|254304164|ref|ZP_04971522.1| possible primase/helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324356|gb|EDK89606.1| possible primase/helicase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 922 Score = 74.5 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 63/181 (34%), Gaps = 33/181 (18%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I++L +G+Y+ N + P H++K PS CF+ Sbjct: 6 TIEELKN------FLGEYLVLK--GINTSSV-FRCFSPTHEDKHPSMSFYKKGNICNCFA 56 Query: 67 CHVKGDHLSFL-SALLGCSFIESVQRLAAIA---------GVPLP-------VVDPKIEK 109 C K + S + F E +++ + V + ++ +K Sbjct: 57 CGEKYNIFSLVGMEYNLKGFKEQKEKVIELYKNKELIQDINVTIYSKKNTKVELESAPQK 116 Query: 110 KEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 KEK + L D+++ K + YL RGI + + +GY P+ + + Sbjct: 117 KEKKERKYPEL-----DYYYLECKKRISETD--YLQRRGISIEVQDRYNIGYDPNFKNNT 169 Query: 170 R 170 Sbjct: 170 W 170 >gi|295101832|emb|CBK99377.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii L2-6] Length = 182 Score = 74.2 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH + PS ND+ +YYCF+C GD + + L + ++ ++LA+ G+ Sbjct: 13 CCPFHSDNDPSMKLNDT--YYYCFACGANGDAIDLTAKLFDLNPRQAAEKLASDFGLDPD 70 Query: 102 VVDPKIEKKEKIQTDLIR 119 + L Sbjct: 71 KPPANAIALPPPKRGLTD 88 >gi|282879955|ref|ZP_06288679.1| mobilizable transposon, excision family protein [Prevotella timonensis CRIS 5C-B1] gi|281306197|gb|EFA98233.1| mobilizable transposon, excision family protein [Prevotella timonensis CRIS 5C-B1] Length = 228 Score = 74.2 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 10/88 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 F GD + + L C+ E++ L Sbjct: 56 FGTGEYGDIIDLVRTLQHCTMYEAIDFL 83 >gi|329955471|ref|ZP_08296379.1| hypothetical protein HMPREF9445_01226 [Bacteroides clarus YIT 12056] gi|328525874|gb|EGF52898.1| hypothetical protein HMPREF9445_01226 [Bacteroides clarus YIT 12056] Length = 286 Score = 74.2 bits (180), Expect = 7e-11, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 96/284 (33%), Gaps = 19/284 (6%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I + + ++ R+ + W PF +E+T SF + + ++ F Sbjct: 3 LEQVR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 GD L G + F+E ++ L+ +G+ LP+ + KK + + Sbjct: 57 GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDV--KV 113 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 T+ H +LK+ +R + I + G +++ R G+ + Sbjct: 114 TELSHEALKSYLKERGI----DPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPM 169 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 G + D S S + + + A RT K E LNS L Sbjct: 170 FKGCISPKDISCVSLSGKKQDMCCVFEGFVDFLSALVLRT-VKDEDCLVLNSVSN-LERS 227 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 L + +L + R + + I D L Sbjct: 228 YAVLEGYGKIRCFLDR-DRAGITALETLNIHFGNKVTDCSGLYD 270 >gi|207723754|ref|YP_002254152.1| dna primase protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] gi|206588958|emb|CAQ35920.1| dna primase protein (partial sequence c terminus) [Ralstonia solanacearum MolK2] Length = 318 Score = 74.2 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 117/327 (35%), Gaps = 29/327 (8%) Query: 307 LRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 R + ++ FDGD G RAA +A++ L H+ V F+ L DPD+FIR Sbjct: 15 CRSSLRQVDTVIFSFDGDAAGRRAARRALEACLPHVTDNKVVKFLFLPPEHDPDTFIREE 74 Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 G AF + ++PL L + +E+ P+ RA + K ++ + LR + Sbjct: 75 GTEAFAAEVRNAMPLSRFLLQAVSEDLDLRQPEGRARAQYEAKPLLSAMPPGGLRLQIVR 134 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + + I G + R ++ R ++L E Sbjct: 135 GLAEMTG-TTPADIEALCGLRSDPAQAGRMTQKRPRVARTAPTAL------------EQK 181 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNEL---QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 +L L+ +PA+ + EL + L L +RL + Sbjct: 182 VLRLLMRYPALAAR-LDADTRAQLTAPELPQGEVLSGLLTECDAVGPEMHFGAFVERLGQ 240 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L V D + E + Q+ LA L R+ + +++++ Sbjct: 241 TPYAEAFAGLRVAVLDDDIEL---EPATQEFDVAVQKMLA-----EPLRRELDMLQRKM- 291 Query: 604 QVTAKGEAEKTAILISILH-EVHIQIH 629 + +A+K + L E+ + Sbjct: 292 EGGHASDADK--ERLRWLVSEISRRRR 316 >gi|327197754|ref|YP_004301452.1| gp119 [Brochothrix phage A9] gi|299810354|gb|ADJ53153.1| gp119 [Brochothrix phage A9] Length = 351 Score = 73.8 bits (179), Expect = 8e-11, Method: Composition-based stats. Identities = 49/331 (14%), Positives = 106/331 (32%), Gaps = 42/331 (12%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPF + + + ++CF C G+ +SF + S+ ++++ L Sbjct: 24 CPFCADDKRRLYLDTESNVWHCFHCDKAGNSVSFTKEVFEVSYRDALEIL--------KT 75 Query: 103 VD-PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGY 161 D + + + A F +N ++ + + + Sbjct: 76 FDCEPGREHVAYFSKYGDSLTDAEKLFLAMHENDEEEETVEVVKTCPAFPVGYKPIIPNF 135 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD----RFRNRLIFPIRSSRGQV 217 E+L + S E + + + + RN ++FP + G Sbjct: 136 NEPEARPFIEYLANRNVSYEDVERHMMCYVVEGTVQRVGKTPLNLRNHIVFPTFNDDGSA 195 Query: 218 IAFGGRTLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276 + R++ VK N+P + K +++N A + +I+ Sbjct: 196 RYWNTRSIEPDAYVKAYNAPSEPHEYGKRDSIFNINQA--------------QYTDKLII 241 Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAA 331 EG D L+ + +++ G +T+ Q+ L+ + ++ + D D Sbjct: 242 CEGVFDALTCG----PSGIATFGKQVTDEQVLLIEQAIAKNPTLKVYIFLDRDAVEQGD- 296 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L L V V + G D + Sbjct: 297 ----KLAKQLLNTTQNVYLVNNTMGGDANDL 323 >gi|288801431|ref|ZP_06406884.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331642|gb|EFC70127.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] Length = 294 Score = 73.8 bits (179), Expect = 8e-11, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 10/111 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+ + I Y+ ++ YW P +E TPSF N + +Y Sbjct: 3 IQHIKQIA-----ITDYMQ--QQGYAPARVQGIHYWYYSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 F GD + + AL C+ E+++ L+ V ++K + Sbjct: 56 FGSGEHGDIIDLVCALHRCTISEAIRLLSGAKQVAHQEFSFGGKRKFSERK 106 >gi|192824234|ref|YP_001994875.1| gp58 [Mycobacterium phage Pukovnik] gi|190610464|gb|ACE79984.1| gp58 [Mycobacterium phage Pukovnik] Length = 133 Score = 73.8 bits (179), Expect = 8e-11, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 8/102 (7%) Query: 16 PISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73 PI+ +I +Y W+ ++ CPFH ++TPS + + C +C+V+GD Sbjct: 9 PIAQVINRYYPDWE---APPDHQEWNKCLCPFHGDETPSAAVSYDLDGFNCMACNVRGDV 65 Query: 74 LSFLSALLGCSFIESVQRLAAI--AGVPLPVVDPKIEKKEKI 113 +S + G +F+ + +R+A G+ +P+ K + Sbjct: 66 ISIIRHEEGVNFVTA-KRIAEEISVGLNVPLQGKPQRKPSRR 106 >gi|66391278|ref|YP_238591.1| ORF023 [Staphylococcus phage Twort] gi|62637208|gb|AAX92319.1| ORF023 [Staphylococcus phage Twort] Length = 353 Score = 73.8 bits (179), Expect = 9e-11, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 120/356 (33%), Gaps = 41/356 (11%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCND----SKGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 G+Y CCPF E+ F+ D G Y+C C G+ ++F+ S ++ Sbjct: 15 KINNGEYQYCCPFCGEQKYKFYVKDSLQSDNGLYHCKKCDATGNPITFMKGYYSVSAKQA 74 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 + L + + P ++ ++ + + + RL Sbjct: 75 IDLLETK-NITF-EISPLDNYSNELSESDKLILHLRKKNHKQETRPTKPPRLPIGFKYLK 132 Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 + E + Y +R + + + I + RN +IF Sbjct: 133 DNLQNKESYPFLYYLKNRGITLDQIIEHN------IAYVTDGYFYKTNGEKASLRNSVIF 186 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETIL-FHKGKNLYNFFGALNYLQKSIRKDVR 267 + G+ + R++ +K +N+P + + ++NF A Sbjct: 187 FTYDNNGKYKYWNTRSIEPNPYLKSINAPSKEQEYARKNCIFNFNVAR------------ 234 Query: 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR---IVLCFDGD 324 + +I+ EG D L+ ++ V++ G +T+ QL + + + + I + D D Sbjct: 235 --NERVMIITEGVFDALTFGKS----GVATFGKQVTQSQLDQIIQHTNKDTIIYIMLDSD 288 Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 + L + + FV+ ED + + ++ + + P Sbjct: 289 ALTNN-------IKLARRLHEHFTTFVVPHGVEDANDMGKEKAVKVLKENRILATP 337 >gi|298383622|ref|ZP_06993183.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] gi|298263226|gb|EFI06089.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] Length = 300 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|78098686|gb|ABB20644.1| DnaG [Bifidobacterium choerinum] Length = 123 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KG++++++++AGL G YD Sbjct: 3 RQLLGGRDFSREDCARFGCGYAPQGWDNLVRHLSGKGYTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R +PIR S G+ + FG R L + + KY+N+P+T L+HK + LY A + + Sbjct: 61 YFRGRATWPIRDSTGRTLGFGARKLYDDDQIGAKYINTPDTQLYHKNQVLYGIDLAKDAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|328952266|ref|YP_004369600.1| P4 alpha zinc-binding domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452590|gb|AEB08419.1| P4 alpha zinc-binding domain protein [Desulfobacca acetoxidans DSM 11109] Length = 354 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 57/363 (15%), Positives = 102/363 (28%), Gaps = 68/363 (18%) Query: 26 DWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83 + + +Y CP+ +++ F G Y+C C KGD + +L G Sbjct: 12 ELKKV-ATTKGVEYAGACPWCGGNDR---FRVWPETGRYWCRGCGKKGDVIQYLRDKRGL 67 Query: 84 SFIESVQ------RL-AAIAGVPLPVVDPKIEKK--------EKIQTDL--IRLIEVATD 126 SF ++ + +L AG P + + + + L + E A Sbjct: 68 SFPDACRVAGREDKLNGGRAGGRGPSTGARSAARPTEGPGPWKPKTSSLPGEQWQEQAGK 127 Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 ++ + YL+ RG+ I+ +LG P +Y R Sbjct: 128 LVEYA-AGKLNSDTWAYLNGRGLADDTIQARRLGLLPAEKYVKRGPWG------------ 174 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 L D + + G+V R E + S + Sbjct: 175 -LPKQLTQHDREKDLWLPAGVVIPYFIGGKVARVRIRRQEAVEDRYWNVSGSYMG----- 228 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN---VVSSLGTALT 303 V II+VE +D L Q V + Sbjct: 229 -----------------PMVLGPEGDVIIVVESELDGFLLAQDCGDMAGVVALGNAQSKP 271 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + + S I++ D D G A+++ G+DP Sbjct: 272 DTGSAAILAKSKLILVALDADQAGAVASWQWWLKTFTQ------ARRWPPVGGKDPGEMW 325 Query: 364 RCY 366 + + Sbjct: 326 QAW 328 >gi|251778782|ref|ZP_04821702.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083097|gb|EES48987.1| DNA primase related protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 866 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDSKGFYY--CFSC 67 L I + LI Q K Y CPFH+EKTPS + Y C+ C Sbjct: 4 LQDIDLKELIEQ-----ETGEKFNKEGYI-KCPFHNEKTPSMSIKFFPDRNKYKFMCWGC 57 Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92 + +GD L F++ ++ + + L Sbjct: 58 NEQGDALDFVTKFKRLNYKSAREYL 82 >gi|78098688|gb|ABB20645.1| DnaG [Bifidobacterium merycicum] Length = 123 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL +GF+++++++AGL G YD Sbjct: 3 RKLLGGRIFTQADCERFGCGYAPQGWDNLVRHLASQGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+HK + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYHKNQVLYGIDLAKQAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|325300217|ref|YP_004260134.1| hypothetical protein Bacsa_3133 [Bacteroides salanitronis DSM 18170] gi|324319770|gb|ADY37661.1| hypothetical protein Bacsa_3133 [Bacteroides salanitronis DSM 18170] Length = 286 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I + + ++ R+ + W PF +E+T SF + + ++ F Sbjct: 3 LEQIR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120 GD L G + F+E ++ L+ +G+ LP+ + KK + + Sbjct: 57 GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDVKVTE 115 Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E + + GI + Sbjct: 116 LNHEALKAYLKERGIDPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207 S + I L ++ ++ F + L Sbjct: 175 SPKDISCVSLSGKKQDTCCVFEGFIDFLS 203 >gi|39939171|ref|NP_950937.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722280|dbj|BAD04770.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 441 Score = 73.0 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 87/439 (19%), Positives = 165/439 (37%), Gaps = 76/439 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRK--TNAVKGDYWACCPFHDEKTPS-FHCND 57 MNY ++ IK + P+S V + + Y CP H + P+ Sbjct: 1 MNY-QNKIKHIQTQFPMS------VLLKKLNIISPNFNIKYRFPCPIHQGQNPTCCQITS 53 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR------------LAAIAGVPL---- 100 +C+ C D + + G +F +++R L + Sbjct: 54 DNKI-HCWKCCCDFDIIDVYMEIRGIKTFNLALERINNFMQTQEFKTLIEQQNLTPNSLT 112 Query: 101 --------------PVVDPK-IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH---- 141 P + + KK ++ ++ L D++++ L + R+ H Sbjct: 113 NPFKYQYHPKNASNPTDEKEINAKKTQLFKEISPLFNQIRDYYNYLLTSNRNNESHLGLE 172 Query: 142 YYLDERGIDSHAIEMFKLGYAPDS----RYSLREHLRQKGFSEEKIIEAGLLIDGDNS-- 195 Y +R ++ I+ FKLGYAP S + L + ++K K++E G + + N Sbjct: 173 YLTQKRKLNLKTIQEFKLGYAPLSDKPLSFRLINYCKKKNIDITKLVEYGFIKEKINQKD 232 Query: 196 -ATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKYLNSPETILFHKGKNLY 249 +D F +I PI + + F + + N +T FH Y Sbjct: 233 AKYYHDTFHGSVIIPIENGYKKTFHFYQNNFREVSYFQPKYKSLNNFSQTNTFHFS---Y 289 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQL 307 FF AL Y++ + II+ EG+ DV+S Q ++NV + L++ QL Sbjct: 290 RFFEALPYIK----------QTKTIIIHEGFFDVISCYQNNIKNVAGLICVTQLLSQSQL 339 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRC 365 +L K + ++++ D D+ G + + + I + +D D +R Sbjct: 340 EILKKENIKVIIALDNDETGQKRSEALGIQLKEANIIYEIRRILPPYDKTCKDVDDLLRQ 399 Query: 366 YGKTAFEKLIVESLPLVDM 384 +GK A++K ++ + Sbjct: 400 FGKQAYQKCFLDPYITYEE 418 >gi|301058401|ref|ZP_07199422.1| zinc-binding domain of primase-helicase [delta proteobacterium NaphS2] gi|300447457|gb|EFK11201.1| zinc-binding domain of primase-helicase [delta proteobacterium NaphS2] Length = 358 Score = 73.0 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 111/373 (29%), Gaps = 58/373 (15%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS----KGFYYCFSCHVKG 71 + NL+ +Y + + ++ G+Y + CP T FH G ++C C G Sbjct: 3 NVLNLVRKYCEPKKV-SSTKGGEYHSPCPGCGG-TDRFHVWPEQNEGNGSWWCRQCGRGG 60 Query: 72 DHLSFLSALLGCSFIESVQRL--AAIAGVPLPVVDPKIEKKEKIQTDLIR---------- 119 D++ FL G + E+ +RL + A V K + + + + Sbjct: 61 DNIQFLREFEGLGYREACERLDISPRA-VDTSYTPLKPQMQRTERKQTWKPDPASPPPSE 119 Query: 120 -LIEVATDF----FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + A F F + + D+ + +L RGID I+ F +G+ P R Sbjct: 120 VWLRKAATFSIWAFENLMNMDPDEGIKGWLARRGIDEFVIKHFGIGWNPGKGGKDLFRPR 179 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 GL + LI P+ S R + + +Y Sbjct: 180 ---------ESWGLPTEFKEDLKKKLWIPMGLIIPMLSDDVPPKVHRIRFRREKDDPRYY 230 Query: 235 NSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 P + + AL + ++VE +D + + A + Sbjct: 231 VLPGSS-------MDCLVEALPGARA-------------YVVVESELDAMMIFFAAKKAR 270 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL- 353 + AL + L D Y N + Sbjct: 271 LPVGVVALGNASR---KPEAKTARLLRDVPVILNALDYDKAGRNQNEWWAENFPRTIRWP 327 Query: 354 -SRGEDPDSFIRC 365 G+DP + Sbjct: 328 VPVGKDPGEAFQK 340 >gi|198275478|ref|ZP_03208009.1| hypothetical protein BACPLE_01643 [Bacteroides plebeius DSM 17135] gi|198271107|gb|EDY95377.1| hypothetical protein BACPLE_01643 [Bacteroides plebeius DSM 17135] Length = 286 Score = 73.0 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I + + ++ R+ + W PF +E+T SF + + ++ F Sbjct: 3 LEQIR-RISLVGFLEDLGHMPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120 GD L G + F+E ++ L+ +G+ LP+ + KK + + Sbjct: 57 GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDVKVTE 115 Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E + + GI + Sbjct: 116 LSHEALKGYLKERGIDPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207 S + I L ++ ++ F + L Sbjct: 175 SPKDISCVSLSGKKQDTCCVFEGFVDFLS 203 >gi|237727371|ref|ZP_04557852.1| TraP [Bacteroides sp. D4] gi|255008823|ref|ZP_05280949.1| hypothetical protein Bfra3_06772 [Bacteroides fragilis 3_1_12] gi|313146567|ref|ZP_07808760.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|229434227|gb|EEO44304.1| TraP [Bacteroides dorei 5_1_36/D4] gi|313135334|gb|EFR52694.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 286 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 50/284 (17%), Positives = 94/284 (33%), Gaps = 19/284 (6%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I + + +V R+ + W PF +E+T SF + + ++ F Sbjct: 3 LEQIRQ-ISLVGFLEGMGHVPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 GD L G + F+E ++ L+ +G+ LP+ + KK + + Sbjct: 57 GIGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVSGFEDV--KV 113 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 T+ H +LK +R + I + G +++ R G+ + Sbjct: 114 TELSHEALKGYLKERGI----DPAIAGRFCKEVAYGIRGKRYFAIGFMNRSGGYELRNPM 169 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 G + D S S + + A RT + E LNS L Sbjct: 170 FKGCISPKDISCVSLSGKKQDTCCVFEGFIDFLSALVLRT-VEDEDCLVLNSVSN-LERS 227 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 L + +L + R + + I D L Sbjct: 228 YAVLEGYGKIRCFLDR-DRAGITALETLTIHFGNKVTDCSGLYD 270 >gi|255969572|gb|ACU45417.1| DNA primase [Peanut witches'-broom phytoplasma] Length = 426 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 85/405 (20%), Positives = 145/405 (35%), Gaps = 67/405 (16%) Query: 25 VDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 V + K ++ CP H + P+ S +C+ C D + A+ Sbjct: 3 VLLKKLKILPQNFNINHRFPCPLHQGQNPTCCHFTSTNKIHCWKCGKDYDIVDVYLAIRQ 62 Query: 83 C-SFIESVQRLAAIAG--------------------------VPLPVVDPKIEKK-EKIQ 114 SF E++QR+ PL P E+K + Sbjct: 63 IKSFHEAIQRIERFMNSREFKTLIHQEKAITKTTPNPWQQPSHPLKPKQPIDEQKINNKK 122 Query: 115 TDLIR----LIEVATDFFHHSLKNARDKRLH----YYLDERGIDSHAIEMFKLGY----- 161 L + L D++H+ L R+ Y +R + I+ FKLGY Sbjct: 123 QQLFKEISPLFNQIRDYYHYLLTANRNNESQPGLTYLTQKRKLTLETIKEFKLGYAPLSD 182 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR--FRNRLIFPIRSSRGQVIA 219 P S L +QK ++ + + Y F +I PI + Q Sbjct: 183 KPLSFRFLNYCQKQKINLDQLLEYGLIKAKTSRQGKKYVHDTFHGSIIIPIENGYQQTFH 242 Query: 220 FGGRTL-----SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274 F + + N +T FH Y FF AL Y++K+ + Sbjct: 243 FYQNHFREVSYFQPKYQALTNFSQTPTFHFS---YRFFAALPYIKKTKI----------L 289 Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAY 332 I+ EG+ DV+S Q ++NVV + A L++ QL ++ K ++++ D D+ G + + Sbjct: 290 IIHEGFFDVISCWQNNIKNVVGLICVAQLLSQSQLEIIKKEKIKVIIALDNDETGQKRSE 349 Query: 333 KAIDLVLCHLIPGNRVNFVLLSR--GEDPDSFIRCYGKTAFEKLI 375 + + IP + +D D +R YGK ++K Sbjct: 350 VFGEQLTSQQIPYEIRRILPPYDRTCKDVDDLLRQYGKAVYQKCF 394 >gi|270295274|ref|ZP_06201475.1| conserved hypothetical protein [Bacteroides sp. D20] gi|282877626|ref|ZP_06286441.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC 35310] gi|270274521|gb|EFA20382.1| conserved hypothetical protein [Bacteroides sp. D20] gi|281300198|gb|EFA92552.1| CHC2 zinc finger containing protein [Prevotella buccalis ATCC 35310] Length = 289 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFRTQAKFIAEAANMTV 95 >gi|298385939|ref|ZP_06995496.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] gi|298261167|gb|EFI04034.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] Length = 277 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 11/83 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I IS+ + Y +++ +W P H E+T SF + +K +Y Sbjct: 2 TIQEVKT-IQISDFLADKGYKPINKKG-----YKWWYLSPLHTEQTASFKVDLNKNLWYD 55 Query: 65 FSCHVKGDHLSFLS---ALLGCS 84 F G+ + S Sbjct: 56 FGLGKGGNIIDLAMALFHTQNIS 78 >gi|78098680|gb|ABB20641.1| DnaG [Bifidobacterium dentium] Length = 123 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 LD R + F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQKEMLDAGLARQG--QHGVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPDTQLYRKNQVLYGIDMAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|269127674|ref|YP_003301044.1| DNA primase catalytic core domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312632|gb|ACY99006.1| DNA primase catalytic core domain protein [Thermomonospora curvata DSM 43183] Length = 555 Score = 72.2 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 115/261 (44%), Gaps = 27/261 (10%) Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + +L ERG+ A+E +++GYAP S +L HL G E I+ AGL G N Sbjct: 231 PGSWVPAHLAERGLGPDALERWQIGYAPASWRALTGHLLSSGHRPEAIVAAGLARRGRNG 290 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 A YD FR+R +F IR G + F GR KYLNSPE+ LF KG+ LY Sbjct: 291 A-LYDLFRDRAMFAIRDGDGAIAGFIGRLREGAAGPKYLNSPESPLFRKGRLLYGLQEVR 349 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN-VVSSLGTALTEYQLRLLWKLS 314 L+ R +LVEG D L++ A + V++ G+A+T+ Q+R L K+ Sbjct: 350 GRLEAGARP----------VLVEGPFDALAVNTASPAHAAVATCGSAVTQAQVRALLKVW 399 Query: 315 PRI---------VLCFDGDDPGLRAAYKAIDLVLC------HLIPGNRVNFVLLSRGEDP 359 PR+ DG + A G V+ VLL+ G DP Sbjct: 400 PRVSGPPAAGGLRQGADGPGVLVMPDGDAAGRAAALRAWEVLAKVGAPVDAVLLAEGGDP 459 Query: 360 DSFIRCYGKTAFEKLIVESLP 380 +R G A + + P Sbjct: 460 ADVLRRRGPAALRGALASAHP 480 >gi|189423346|ref|YP_001950523.1| zinc finger CHC2-family protein [Geobacter lovleyi SZ] gi|189419605|gb|ACD94003.1| zinc finger CHC2-family protein [Geobacter lovleyi SZ] Length = 170 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 15/90 (16%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I PI+++I KG Y CCPFH ++ PS D Sbjct: 95 ITPEMIDQARQ-YPITSIID-----------FSKGRYR-CCPFHKDRNPSMALYD--NHV 139 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +CF C+ D +S L G +F E+V L Sbjct: 140 HCFVCNRSWDSISATMELDGVNFREAVLAL 169 >gi|281423787|ref|ZP_06254700.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] gi|282881681|ref|ZP_06290344.1| CHC2 zinc finger containing protein [Prevotella timonensis CRIS 5C-B1] gi|281304440|gb|EFA96537.1| CHC2 zinc finger containing protein [Prevotella timonensis CRIS 5C-B1] gi|281402104|gb|EFB32935.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] Length = 300 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAIR-RMPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|299148720|ref|ZP_07041782.1| putative mobilizable transposon, excision protein [Bacteroides sp. 3_1_23] gi|298513481|gb|EFI37368.1| putative mobilizable transposon, excision protein [Bacteroides sp. 3_1_23] Length = 294 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F+ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SGDFMAQAKFIAETANMTV 95 >gi|39939130|ref|NP_950896.1| DNA primase [Onion yellows phytoplasma OY-M] gi|39722239|dbj|BAD04729.1| DNA primase [Onion yellows phytoplasma OY-M] Length = 410 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 68/353 (19%), Positives = 124/353 (35%), Gaps = 62/353 (17%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91 CP H K P+ S +C+ C D + + SF E++QR Sbjct: 37 PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96 Query: 92 ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129 L + P ++ + L + L D++H Sbjct: 97 FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156 Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181 + L R+ Y +R + I+ FKLGYAP S SL + +++ Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216 Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233 K++E G I +D F +I P+ + + F + + Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 N +T FH + ++ N ++ + DV+S Q ++N Sbjct: 277 TNFSQTPTFHFSYRFF------------LKLYHILNKQKPSSFMKVFFDVISCWQNNIKN 324 Query: 294 VVSSLGTA--LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 VV + A L++ QL +L K + ++++ D D+ G + + + + H IP Sbjct: 325 VVGLICVAQLLSQSQLTILKKENIKVIIALDNDETGQKRSEALGEQLTSHQIP 377 >gi|317475415|ref|ZP_07934679.1| hypothetical protein HMPREF1016_01661 [Bacteroides eggerthii 1_2_48FAA] gi|316908443|gb|EFV30133.1| hypothetical protein HMPREF1016_01661 [Bacteroides eggerthii 1_2_48FAA] Length = 300 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVRQ-MPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|114567768|ref|YP_754922.1| DNA primase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338703|gb|ABI69551.1| DNA primase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 922 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 88/563 (15%), Positives = 172/563 (30%), Gaps = 82/563 (14%) Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D + + +E++ LA + LP + + +++ + H Sbjct: 65 DPIQVTQRIREVDEMEAIMALANDFQITLPTDWHQQLEAHRLRQRRNEAWTDFAEECHEL 124 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 L + Y RG+ I K+GY P S+ L KGF+ +++ GL + Sbjct: 125 LTD----EHRQYWRSRGLTDELINSIKIGYCP-GNGSIITTLISKGFTRQELWNFGLSVG 179 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 + P + +VI GR ++ + + K LYN Sbjct: 180 DGSRE---FLTVGYYTLPNWDGK-KVIDVQGRRSIDDLTLTTPRYKNSSG--EVKALYN- 232 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311 R + L EG D LSL Q G N S G + + L+ Sbjct: 233 --------------PRALQEDTVFLAEGVPDTLSLIQMGF-NACGSYGVGGVKDEWIPLF 277 Query: 312 KLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 + S + + FD DD G +YK G+ +LL +D + F+ +G Sbjct: 278 RKSHEVFIAFDNDDAGKTQSYKRAR------EIGDNTRIILLPDVKDVNEFLVKHGIEQG 331 Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + L+ E + + + + +L + I ++ + +Y IR Sbjct: 332 QTLMRELAENAKTALEMDIDALPTESGKVDEDLLKDIIARIFNLP-PLRQNHYRDLIRHH 390 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 + Y +N+ K Q L Sbjct: 391 FGMTKKDIEQFFRHYHNLKVRNSDTLGIKREDIDTPQV--------------------LL 430 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 I P+ ++ + D E Q L + E + + IH + L + Sbjct: 431 IEDPSYVRLAQSFVLDKVLYAQEFQALGN------NEGESYRKRSIHIVTSDHELLPLPE 484 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 ++ + + +W + LL R ++ ++ Sbjct: 485 KVTKDPNEIMIWKLAED-------------------QLLLRRPLNSATRRWSKTGTPYSI 525 Query: 612 EKT---AILISILHEVHIQIHQI 631 +K + +++ +I ++ Sbjct: 526 DKFLKGEEEQVSIKDLYQRIERM 548 >gi|284794829|gb|ADB93755.1| gp62 [Mycobacterium phage RedRock] Length = 130 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Query: 13 IHIPISNLIGQYVD-WDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 PI+ +I +Y W+ ++ CPFH + TPS + + C +C V+ Sbjct: 3 AESPITKVILRYYPDWEP---PPDHNEWNKCLCPFHGDGTPSAAVSYDLQGFNCLACGVR 59 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKI 113 GD +S + SF E+ + A ++ G +PV K + Sbjct: 60 GDAISIIRHEEEVSFAEADRIAAELSMGSHVPVSRKPARKPSRR 103 >gi|302345841|ref|YP_003814194.1| hypothetical protein HMPREF0659_A6128 [Prevotella melaninogenica ATCC 25845] gi|302149526|gb|ADK95788.1| conserved hypothetical protein [Prevotella melaninogenica ATCC 25845] Length = 296 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + +K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIDEIKA-ISIKDYLGS-MSIYPKKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 G + + L S I++++ + LP + + I + Sbjct: 58 LDEGGSLIDLVMKLHNFSLIQAIELFNGKQNI-LPKLSIANSETNSPSQSRIEI 110 >gi|78098666|gb|ABB20634.1| DnaG [Bifidobacterium indicum] gi|78098670|gb|ABB20636.1| DnaG [Bifidobacterium gallicum DSM 20093] gi|78098674|gb|ABB20638.1| DnaG [Bifidobacterium cuniculi] gi|78098676|gb|ABB20639.1| DnaG [Bifidobacterium psychraerophilum] Length = 123 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKMLGGRNFSQADCERFGCGYAPRGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK--YLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L ++++ Y+N+P+T L+ K + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYDDDTIQAKYINTPDTQLYRKTQVLYGIDLAKPSI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098678|gb|ABB20640.1| DnaG [Bifidobacterium animalis subsp. animalis ATCC 25527] gi|78098696|gb|ABB20649.1| DnaG [Bifidobacterium animalis subsp. lactis] Length = 123 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G + YD Sbjct: 3 RKLLAGRNFSQQDCARFGCGYAPQGWDNLVRHLADKGFTQQEMLDAGLARQG--ARGIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R +PIR S G+ + FG R L +S+ KY+N+P+T L+HK + LY A + Sbjct: 61 YFRGRATWPIRDSTGRTLGFGARKLYDDDSIAAKYINTPDTQLYHKNQVLYGIDLAKPQI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|295104710|emb|CBL02254.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] Length = 202 Score = 71.8 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH + PS ND+ +YYCF C GD + + L + ++ ++L G+ Sbjct: 33 CCPFHSDSDPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLNPRQAAEKLIHDFGLDPD 90 Query: 102 VVDPKIEKKEKIQTDLIR 119 + DL Sbjct: 91 KPPANAIALLPPKRDLTD 108 >gi|78098690|gb|ABB20646.1| DnaG [Bifidobacterium minimum] Length = 123 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 61/120 (50%), Gaps = 4/120 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R + F GYAP +L +L +KGF+ +++++AGL G YD Sbjct: 3 RAMLSGRNFSARDYAYFGCGYAPRGWDNLVRYLAEKGFTHKEMLDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + KY+N+P+T L+ K + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARRLYDDDAIEAKYINTPDTALYRKTQVLYGLDLAKKAI 120 >gi|317476931|ref|ZP_07936174.1| hypothetical protein HMPREF1016_03158 [Bacteroides eggerthii 1_2_48FAA] gi|316907106|gb|EFV28817.1| hypothetical protein HMPREF1016_03158 [Bacteroides eggerthii 1_2_48FAA] Length = 286 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 17/209 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I + + ++ R+ + W PF +E+T SF + + ++ F Sbjct: 3 LEQIRQ-ISLVGFLEDLGHIPVSRKGNDV-----WFRSPFRNERTASFKVDTQRNVWFDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL---- 120 GD L G + F+E ++ L+ +G+ LP+ + KK + Sbjct: 57 GLGKGGDIFHLAGELTGSTGFMEQLEFLSGKSGI-LPLRPLQERKKIPRVFGFEDVKVTE 115 Query: 121 --IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 E + + + GI + Sbjct: 116 LSHEALKGYLKERGIDPAIAGRFCKEVKYGIRGKRYFAIGFMNRSGGYELRNPMFKGC-I 174 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLI 207 S + I L ++ ++ F + L Sbjct: 175 SPKDISCVSLSEKKQDTCCVFEGFVDFLS 203 >gi|78098662|gb|ABB20632.1| DnaG [Bifidobacterium adolescentis] Length = 123 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 LD R + F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDTINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098700|gb|ABB20651.1| DnaG [Bifidobacterium ruminantium] Length = 123 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 LD R + F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLDGRNFSQADCQRFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDAINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|299141855|ref|ZP_07034990.1| mobilizable transposon protein, excision protein [Prevotella oris C735] gi|298576706|gb|EFI48577.1| mobilizable transposon protein, excision protein [Prevotella oris C735] Length = 295 Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 7/152 (4%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + K + G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIDEIKA-ISIKDYLGS-MSIYPTKNYSYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 G + + L CS +++++ L LP + E K T + + AT+ Sbjct: 58 LDEGGSLIDLVMKLHNCSLVQAIEAL-NNNKYKLPAITSISETKTLTLTRIEII--EATE 114 Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + +L R + Sbjct: 115 LCNPNLIKYLAARAVNLNTAKKYCKEIHYRVG 146 >gi|212550268|ref|YP_002308589.1| hypothetical protein CFPG_P2-9 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549401|dbj|BAG84067.1| hypothetical protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 895 Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSK-GFYYCFSCHVKGDHLSF 76 I +Y K Y A PF +EK PSF ND+K ++CFS + G+ F Sbjct: 29 ILKYYRVKLNAVKNQKYKYDALTPFKNEKVPSFKVFPPNDTKYARFHCFSTGMTGNVYDF 88 Query: 77 LSALLGCSFIESVQRLAAIAGVPL 100 + + C + +++ I GVP+ Sbjct: 89 VMKMEHCDKDAATKKILEILGVPI 112 >gi|229825964|ref|ZP_04452033.1| hypothetical protein GCWU000182_01328 [Abiotrophia defectiva ATCC 49176] gi|229789706|gb|EEP25820.1| hypothetical protein GCWU000182_01328 [Abiotrophia defectiva ATCC 49176] Length = 151 Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 12/98 (12%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CCPFH +K PS K Y+CF+C + GD + ++S + G + ++ ++L + + Sbjct: 23 CCPFHRDKHPSMKI--DKN-YHCFACGIGGDAIDYVSRMFGLTQYQAAKKLIDDFSLMVE 79 Query: 102 ---------VVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 KI + + +IR+ + + Sbjct: 80 HGRKMALSAKEKEKIIRARQENERIIRIKKRFGRWCSE 117 >gi|289762510|ref|ZP_06521888.1| DNA primase dnaG [Mycobacterium tuberculosis GM 1503] gi|289710016|gb|EFD74032.1| DNA primase dnaG [Mycobacterium tuberculosis GM 1503] Length = 156 Score = 71.5 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 15/151 (9%), Positives = 49/151 (32%), Gaps = 6/151 (3%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 + L + + +PA+ + L + + E + + + + + + + Sbjct: 4 QREALKSALQYPALAGPVFDALTVEGFTHPEYAAVRAAIDTAGGTSAGLSGAQWLDMVRQ 63 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + + L ++ + D Y + + L RQ E++ ++ Sbjct: 64 QTTSTVTSALISELGVEAIQV------DDDKLPRYIAGVLARLQEVWLGRQIAEVKSKLQ 117 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + ++ L L + + Q Sbjct: 118 RMSPIEQGDEYHALFGDLVAMEAYRRSLLEQ 148 >gi|78098702|gb|ABB20652.1| DnaG [Bifidobacterium thermacidophilum subsp. porcinum] Length = 123 Score = 71.1 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRNFSQADCERFGCGYAPQGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDGINAKYINTPDTQLYRKNQVLYGIDLAKDAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|86741993|ref|YP_482393.1| CHC2-type zinc finger-containing protein [Frankia sp. CcI3] gi|86568855|gb|ABD12664.1| zinc finger, CHC2-type [Frankia sp. CcI3] Length = 389 Score = 71.1 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 51/388 (13%), Positives = 107/388 (27%), Gaps = 73/388 (18%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG---FYYCF 65 +L ++ L + + + + + P H ++ PS + C Sbjct: 7 DAVLDATDLTALATE-ICGEPQGRGRA-ARWHCPNPAHPDEHPSMGIYQGHHGRWRWKCH 64 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL--------------PVVDPKIEKKE 111 +C G + L G + E++ LA AG+ P P E+ Sbjct: 65 ACGDGGTAIDLLMTGTGMTVREALLDLADRAGITPAQHHTPHRPRSTAHPTPTPPAEQLT 124 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 + + L+ A D L YL RG+ + ++G+ P R+ R Sbjct: 125 PVDPAIGTLVTAAADL----LWRPIGSGARRYLHNRGLTDRLLAANRVGFDPGPRHLPRP 180 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + + + + + + + R L+ Sbjct: 181 DGLPRAGP------------------------GIVFPVLHPTDRRPVYYQLRYLNPELRR 216 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 +Y + + + R + ++ EG+ D L+ +G+ Sbjct: 217 RY----DQPAHDLA----------PNPKLAHLTTDRPAHPNLTVVCEGFPDALTAAHSGL 262 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPR------IVLCFDGDDPGLR-----AAYKAIDLVLC 340 V + L + ++CFD D A L Sbjct: 263 AAVALLGTAHASPASAPTLARRLTEERPGSAFIICFDDDTAHDPGKLPAGQNAAARLADE 322 Query: 341 HLIPGNRVNFVLLSRG-EDPDSFIRCYG 367 V + G +D +++ + Sbjct: 323 LAQHQRLVLNIQTPAGIKDLNAWWQQDP 350 >gi|258648659|ref|ZP_05736128.1| putative mobilizable transposon, excision protein [Prevotella tannerae ATCC 51259] gi|260851453|gb|EEX71322.1| putative mobilizable transposon, excision protein [Prevotella tannerae ATCC 51259] Length = 294 Score = 71.1 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + IP+++ + + + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAIRQ-IPLADFLAR---LGHEPARRSGNELWYIAPYRGERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPLPVVDP 105 GD + FL F + +A A + + + Sbjct: 62 GKGGDIFTLAGEFLQ---SGDFRTQAKFIAETANMTVAEWEK 100 >gi|218128972|ref|ZP_03457776.1| hypothetical protein BACEGG_00545 [Bacteroides eggerthii DSM 20697] gi|217988935|gb|EEC55252.1| hypothetical protein BACEGG_00545 [Bacteroides eggerthii DSM 20697] Length = 304 Score = 71.1 bits (172), Expect = 5e-10, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%) Query: 15 IPISNLIGQYVDWDRRKTNAVK--GDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 IP+ +++ Y N + G Y PF + +PSF + +Y F G Sbjct: 9 IPLEDILSYY------GHNPSRHFGGYDMYSSPFRRDSSPSFKVFKDENRWYDFGEGTHG 62 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 + + + CSF E+++R+ + G+ + + + L Sbjct: 63 RAVDLVMRIENCSFPEAMRRIGEM-GLTGQAGATSGQTSVREKKAL 107 >gi|291514836|emb|CBK64046.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301] Length = 294 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 8/166 (4%) Query: 18 SNLIGQYVDWDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 S+ IG RR + + P +E+TPSF KG +Y F G L Sbjct: 5 SDCIGIREYLLRRGLHPHRETATHGMFLSPLREERTPSFSVRYDKGLWYDFGLDEGGTLL 64 Query: 75 SFLSALLGCSFIESVQRLAAIAGVPLP-VVDPKIEKKEKIQTDLIRL----IEVATDFFH 129 + L GC E+++ L A +P P +E ++ + + Sbjct: 65 QLVMRLEGCGMAEAIRHLRKEAANEVPFQPLPTASPREDSPLRILSVGTIRHPALIGYLR 124 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + + Sbjct: 125 ERGIDPTVAGALCREVHYAVGERRFFAIGFRNDAGGWELRSPQFKG 170 >gi|300777222|ref|ZP_07087080.1| DNA primase [Chryseobacterium gleum ATCC 35910] gi|300502732|gb|EFK33872.1| DNA primase [Chryseobacterium gleum ATCC 35910] Length = 286 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 45/292 (15%), Positives = 99/292 (33%), Gaps = 15/292 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ I I ++ + + K N Y+A +EKTPS + K + F Sbjct: 4 EEIKQKIDIRTVLEMFGRF-PVKENKRSAFYFAL--DREEKTPSLSVDFIKNKAFDFGTG 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE-----KIQTDLIRLIEV 123 D +S + + CS E+++ L + +P ++K+ K ++ + E+ Sbjct: 61 KSYDVISIVQQIKKCSVSEALKYLCSS---DFSYQNPIHKEKKGEIRLKDNYKILEIKEI 117 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS-LREHLRQKGFSEEK 182 LK+ + + E + F +G+ DS +R + + Sbjct: 118 IHPALIRYLKSRNVLEQKHLVQEVHYERQDKTYFGIGFQNDSGDFEIRNPYSKICLGSKD 177 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 + + + N ++ F + L F S+ L + + E + Sbjct: 178 VSWIKVRSNSKNEVAVFEGFFDYLTFRNLSNEDHPNCDC---LILNSTAMLFKAKEKLKD 234 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNV 294 + L+ A +SI + +N ++ Y D+ + Sbjct: 235 YNKIILFLDNDANGKSVRSIIEKEYKNVEDSSLMYADYKDLNQWFCVQKEVP 286 >gi|253572812|ref|ZP_04850212.1| TraP [Bacteroides sp. 1_1_6] gi|251837712|gb|EES65803.1| TraP [Bacteroides sp. 1_1_6] Length = 300 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + +P+++ + + + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVR-RMPLTDFLAR---LGHEPVRRSSNELWYLAPYRGERTPSFRVNVAKQLWYDFGL 61 Query: 68 HVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 62 GKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|78098672|gb|ABB20637.1| DnaG [Bifidobacterium longum subsp. suis] gi|78098684|gb|ABB20643.1| DnaG [Bifidobacterium longum subsp. infantis] Length = 123 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF++++I++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQKEILDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098698|gb|ABB20650.1| DnaG [Bifidobacterium pullorum] Length = 123 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLAGKGFTQQEMLDAGLARRGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L +++ KY+N+P+T L+ K + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYDDDAIAAKYINTPDTQLYRKNQVLYGIDLAKAAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098692|gb|ABB20647.1| DnaG [Bifidobacterium saeculare] Length = 123 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARRGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDAITAKYINTPDTQLYRKTQVLYGIDLAKAAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098660|gb|ABB20631.1| DnaG [Bifidobacterium magnum] Length = 123 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 H LD R + F GYAP +L HL +KGF+++++++AGL G+N T YD Sbjct: 3 HKMLDGRNFSWNDAMHFGCGYAPKGWDNLVRHLSEKGFTQQEMMDAGLARRGNNG-TVYD 61 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV-KYLNSPETILFHKGKNLYNFFGALNYLQ 259 FR R +PIR + G + FG R L ++ KYLN+P+T L+ K + LY A N +Q Sbjct: 62 YFRGRATWPIRDTAGNTLGFGARKLFDDDNAGKYLNTPDTALYRKSQVLYGLDLAKNSIQ 121 Query: 260 KS 261 K Sbjct: 122 KK 123 >gi|78098694|gb|ABB20648.1| DnaG [Bifidobacterium gallinarum] Length = 123 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARRGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + +++ KY+N+P+T L+ K + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDAIAAKYINTPDTQLYRKTQVLYGIDLAKAAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|80159745|ref|YP_398489.1| putative DNA primase [Clostridium phage c-st] gi|78675335|dbj|BAE47757.1| putative DNA primase [Clostridium phage c-st] Length = 325 Score = 71.1 bits (172), Expect = 6e-10, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 91/307 (29%), Gaps = 36/307 (11%) Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + + + F ++V+ L I G+ + + + KKE+ + L + + A Sbjct: 52 GDIFTLVMEIKKYEFPQAVKYLHEILGLK-YIFNIQDIKKEEKKDIL-DVFKKA------ 103 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 K+ + + ++ P ++G + Sbjct: 104 -----MQKKHFNNDIDELKIYNEDICREIIQIP------YIGWIREGIMPFTQERFNIGY 152 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP-ETILFHKGKNLY 249 D + + + + GRTL K + + F K NLY Sbjct: 153 SRDKNRIAIPHRFWC------GKENEYVGVMGRTLVKNYDLLDIPKYFPLKAFPKSMNLY 206 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 Y+QK ++ II+ E VL + V+ G L Q+R+ Sbjct: 207 GLQENYKYIQK----------ANKIIVFEAEKSVLKAHSFLCRLGVALGGHELCPEQIRI 256 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L L I+ D D + + + LL + P K Sbjct: 257 LLGLDVEIIFAMDNDMDEQLSINMCNQVKSFRRTSYIYDKWGLLGEKDSPVDKGMKVFKA 316 Query: 370 AFEKLIV 376 + I Sbjct: 317 LYNNRIK 323 >gi|154506634|ref|ZP_02043091.1| hypothetical protein RUMGNA_03901 [Ruminococcus gnavus ATCC 29149] gi|260588760|ref|ZP_05854673.1| DNA primase [Blautia hansenii DSM 20583] gi|153793348|gb|EDN75771.1| hypothetical protein RUMGNA_03901 [Ruminococcus gnavus ATCC 29149] gi|260540843|gb|EEX21412.1| DNA primase [Blautia hansenii DSM 20583] Length = 212 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 ACCPFH + +PS ++ YYCF C GD + + L G E+ +LA G+ Sbjct: 29 MACCPFHSDMSPSMKLDE---RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLN 85 Query: 100 LPVVDPKIEKKE 111 + Sbjct: 86 YDSRQKPSVRPR 97 >gi|237743677|ref|ZP_04574158.1| predicted protein [Fusobacterium sp. 7_1] gi|229432708|gb|EEO42920.1| predicted protein [Fusobacterium sp. 7_1] Length = 586 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 77/607 (12%), Positives = 185/607 (30%), Gaps = 65/607 (10%) Query: 23 QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALL 81 +Y++ N K H++K PS CF+C + + Sbjct: 25 EYLNLK--GVNTNKF-MRCFSKTHEDKHPSMSFYRRANICKCFACGKTYNIFELVGQEYG 81 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141 +F E V++ E+ + + + + + +A Sbjct: 82 LKTFKEQVEK---------------AEELYNNRGLIKDINVI----YSQKGTSAELDYAR 122 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201 E+ + + + Y R ++L ++G S++ I + D Sbjct: 123 EKKVEKDLINIHGKKAFYFYECKKRMGNCDYLEKRGISKKVIDYHNIGYDSSFKEGKMKF 182 Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261 +IFP + + R +++ + +Y+ E +F+ Sbjct: 183 PIQAIIFPTSKTS-----YTARNVNEKSNFRYIKVGEASMFN------------------ 219 Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 ++ +N +VEG +D LSL + + + + + +L Sbjct: 220 -YWELEKNKKVPFYIVEGEIDALSLAEVNRKAISLGSINDINIFVNKLEKDSPENKFYLM 278 Query: 322 -DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIRCYGKTAFEKLIV--- 376 D D G A +L+ G + +D + F+ ++ +KL Sbjct: 279 LDNDIRGQEAQK---ELLAALNKIGINCVSTNILENFKDVNEFLVKDKESLIKKLEELEK 335 Query: 377 -ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRL 432 E+ + + + + + I K+R + +D + Sbjct: 336 VENKNIKEKGGTNMSSDVKILDFIKGRIEANTDGINYTTISQDKIRETLGMSKEEFKDGM 395 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 LF + K N+ +++ + K E Sbjct: 396 ATLFYSKRIFFHRE-KEEKINSSDGTVSLIDKKVRLFTDEKAFKDFSNEWTEREKAKEDK 454 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 N A + E ++ ++ + QK+++ + E K F ++ + F ++ Sbjct: 455 NKKAEIAEIKEKDKKVKKLSENAQKIYNKIKEINKEDKVFAKVNDIRKELDIEFKDMQSA 514 Query: 553 LDRQVRDA---GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L + + + + + +++ Y + K+ + +KE I++++ K Sbjct: 515 LKELTSNKISYARFISYKDKDTEEIKNDYV--VTNSKKVFAIISEKEAIKEKMFSNDEKA 572 Query: 610 EAEKTAI 616 +K Sbjct: 573 IPQKVKK 579 >gi|226377773|ref|YP_002790822.1| putative DNA primase [Lactobacillus phage Lb338-1] gi|225921551|gb|ACO37064.1| putative DNA primase [Lactobacillus phage Lb338-1] Length = 351 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 55/369 (14%), Positives = 106/369 (28%), Gaps = 62/369 (16%) Query: 43 CPFHDEKTPSFHCNDSK-----GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA--- 94 CPF F+ N+ + G + C++C G+ S + SF + A Sbjct: 25 CPFCGSPKQKFYINNDETSNKFGLWICYNCEEHGNLASLYMRIKKVSFKQ-----AQDDM 79 Query: 95 -IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 AG+ + V E L +L + H + Sbjct: 80 FNAGISMDSVPYNNELTNNENIML-------------TLGKPMQAKEHSIEANKLSPPAL 126 Query: 154 IEMFKL-----GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 K L K + +S + ++F Sbjct: 127 PYGLKYFNGNSPSEIPYWNYLERRGFSKELILSQGFGYVESGYAISSRGKRIPIQKHVVF 186 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETI---LFHKGKNLYNFFGALNYLQKSIRKD 265 S+G + R++ K +N+P+ + ++ A Sbjct: 187 FSYDSKGNYTYWNTRSI-TNSIPKSINAPQNESGTAITREDVVFGLNYASK--------- 236 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFD 322 II+ EG D L+L V + G +T+ Q++L+ + +I++ D Sbjct: 237 -----QPVIIITEGVPDALTLY----PYGVGTFGKQVTDRQIKLIIDSIQEKQKILVMLD 287 Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382 D + L V G+D +S R ++ + + P+ Sbjct: 288 MDASD-----LLVKLGRKLYDKHKETYLVYNPTGKDANSLGRDKAFEVIKRHTMRADPVS 342 Query: 383 DMLWKRETE 391 L+ + Sbjct: 343 SNLFLLHKQ 351 >gi|78098668|gb|ABB20635.1| DnaG [Bifidobacterium pseudolongum subsp. globosum] gi|78098704|gb|ABB20653.1| DnaG [Bifidobacterium pseudocatenulatum DSM 20438] Length = 123 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRDFSQADCARFGCGYAPRGWDNLVRHLANKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + KY+N+P+T L+HK + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120 >gi|153951941|ref|YP_001397989.1| putative DNA primase [Campylobacter jejuni subsp. doylei 269.97] gi|152939387|gb|ABS44128.1| putative DNA primase [Campylobacter jejuni subsp. doylei 269.97] Length = 388 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 61/414 (14%), Positives = 131/414 (31%), Gaps = 71/414 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF----H--DEKTPSFH 54 M Y I+ L +IPI ++ + + K C F H ++ S Sbjct: 1 MKYD---IERL-NNIPIMDV------LESLGAISGKNKRIIHC-FNITAHKNNDHNASLG 49 Query: 55 CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL-------------- 100 +S +CF+C + G+ ++ + + +F E+ + L + +P Sbjct: 50 IYESTNTCHCFACGIGGNPVNVVKTMFNGNFKEACEYLHSQFNIPFLDGIQATYKKVFER 109 Query: 101 PVVDPKIEKKEKIQTDLIRL------------IEVATDF-------FHHSLKNARDKRLH 141 P K + + + A + SL + + Sbjct: 110 PKPKAKDYVFFDPNKKYVEVEKLVPFVQNYSTLTKAQKLKLVYTTIYRFSLSTEQKAKNL 169 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201 YYL D +E + + E+L ++ F E +IE + + + Sbjct: 170 YYLKRGIKDLSLVEKIGFLNFNNIKK--LENLLKEYFPIEDLIEFKIFSEEKQAWKYAFN 227 Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261 F + +V+ F R + N + + G ++ L Sbjct: 228 VALVPNFDLY--SNRVVGFSLRVIDS-----TYNGAKEVNISCGNIVFAMPFGLE----- 275 Query: 262 IRKDVRRNSSSFIILVEGYMDVLSL--CQAGVQNVVSSLGTALTEYQLRLLWKLS-PRIV 318 + I++ EG++D LS + ++ +L R++ Sbjct: 276 ---NKSLKECEKIVITEGHIDCLSARNYYKQDSKTLFVSFAGTFSFREEILTVFKGKRVM 332 Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372 LCFD D+ G+ + + I + + ++ G+D + + + + Sbjct: 333 LCFDKDEAGINGEKSLSEKLSLLNIKNYSLTW-DVADGKDLNDLLLADKMNSIK 385 >gi|303236523|ref|ZP_07323108.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302483271|gb|EFL46281.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 296 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIDEIKA-ISIKDYLGS-MSIYPTKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 G + + L CS +++++ LP K I + Sbjct: 58 LDEGGSLIDLVMKLHNCSLVQAIELFNGKQN-NLPKFSIANSKTISPNQSRIEV 110 >gi|261886285|ref|ZP_06010324.1| DNA primase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 293 Score = 70.7 bits (171), Expect = 7e-10, Method: Composition-based stats. Identities = 61/352 (17%), Positives = 125/352 (35%), Gaps = 59/352 (16%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 MD + L AG+ N V+ LGTALTE + LL + +++L FD D+ G+ AA+K+ L+ Sbjct: 1 MDCIMLHLAGISNAVAVLGTALTEKHIPLLKRSDIKVILSFDNDEAGVNAAFKSAKLLAS 60 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 G VL+S G+DP + + + L + + ++ + TP E Sbjct: 61 SECDG---RVVLISGGKDPAELVASGRANELRNSLEGGVELGEFYIRHLIKSSNPKTPLE 117 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 A+ ++ +K + + Y + L L + RY K ++ K Sbjct: 118 VAKTLESVQEFTKGLK-EIVANSYVPLVSSLLS-LAPNSFSLCGNGFRYSPKKQMAKETK 175 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + L E +L ++ + L+ + + +++ Sbjct: 176 SAKK----------------DLLELEILKNMLLNKDYLEVVKSDCGSDMFVT--HNEIYK 217 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + +++L ++ D + Y Sbjct: 218 AV-----------------TISQNPNNPHIREL----------------SLNDNFELYDS 244 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 L K +L + +K I + + + K + + L + Q+ I+ Sbjct: 245 LDRLKKALNIL--KINFCDKTIVLLASSNDKSKFEKI-AQLQNIKKQLKGIQ 293 >gi|302858570|gb|ADL71316.1| gp56 [Mycobacterium phage Eagle] Length = 137 Score = 70.7 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 17 ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76 I I +Y + K CPFH E+ PS + + + C +C VKGD L Sbjct: 9 IVQAIHRYHPDWEPPKDTGKDWIKCLCPFHAEEVPSAAVSFVRQAFNCLACGVKGDVLGL 68 Query: 77 LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 + S+ E+ +R+A L + + + Sbjct: 69 IKKQEEVSYAEA-ERIAE----ELSPGGNRAVPAKSERQS 103 >gi|190571861|ref|YP_001966868.1| DNA primase [Tomato big bud phytoplasma] gi|74315216|gb|ABA02287.1| DNA primase [Tomato big bud phytoplasma] Length = 331 Score = 70.7 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 100/273 (36%), Gaps = 26/273 (9%) Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + + + F+ L Y L +R ++ I+ F++G+A + +L +L Sbjct: 77 DTILAIWDEISHFYQKQLWATPAALD-YLLRKRQLNPLLIKEFQIGFANKNNQNLLNYLE 135 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK------G 228 + LL SYD N + P+ GQ+I + R Sbjct: 136 NQQADLMPYYAVDLLRKNPKF--SYDGCLNCWLIPVFDENGQIIHYY-RHHYPAELPYRP 192 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + N +F Y F A + + IL EG+ DVL Q Sbjct: 193 KYQALRNLTNQTIFS---IPYGFHYAKKAI----------LDTKTAILHEGFFDVLQSYQ 239 Query: 289 AGVQNVVSSLGTALTEYQL--RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 ++NV+ + + K +++L D D+ GL+ A++ + I Sbjct: 240 NQIKNVIGLITVSNNFSPFILDFFKKYQIKVILGLDNDETGLKTAHRLSQQLKRLNIEN- 298 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 + + +D D +R YG ++K+ +ES Sbjct: 299 YIKTIPNHDCKDADELLRKYGLKTYQKIYLESK 331 >gi|46580593|ref|YP_011401.1| primase [Desulfovibrio vulgaris str. Hildenborough] gi|46450012|gb|AAS96661.1| primase, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234328|gb|ADP87182.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1] Length = 830 Score = 70.7 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 54/358 (15%), Positives = 101/358 (28%), Gaps = 47/358 (13%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCS------FIESVQRLA 93 CP HD++ SF N + ++CF C GD + + G F + A Sbjct: 33 GLCPLHDDQNQSFSYNVDEDVFHCFRQCVEDGDLVDLYCHVRGLPLRSGEGFKAFRREFA 92 Query: 94 AIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSH 152 A AGV P +K E A+ + I Sbjct: 93 ADAGVGQPARRTPGETRK----------HEAASQ---------KGAAKRSPRQNLEIPEA 133 Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIF 208 E + R LL + Y F +R++ Sbjct: 134 VYEAMTPV--TPDWAARLYTQRGWTPEVMTTYGVRLLSHFRKKSDLYAVFPLKTIDRVVI 191 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 P+R ++G + ++ + K + + + Sbjct: 192 PVRDAQGVLRNLRC-----------YHALGKPPGDQPKI---YSWGRGHGASMLFPPASM 237 Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGL 328 ++L EG D L GV+N ++ G + +V+ +D D G Sbjct: 238 LRPGGVLLCEGEGDCLCAFSHGVRNAITQTGKPNEWPEDHAEALAGRDVVIAYDADQAGQ 297 Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLW 386 + A A ++ + + + S+ +G+ + + L D + Sbjct: 298 KYAEAAAKNLVRKGCAVRIIRWPAFMGLREDGSWPEDHGQDLTDFFVRHRKTLSDFML 355 >gi|78098682|gb|ABB20642.1| DnaG [Bifidobacterium thermophilum] gi|78098708|gb|ABB20655.1| DnaG [Bifidobacterium pseudolongum subsp. pseudolongum] Length = 123 Score = 70.7 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRDFSQVDCARFGCGYAPRGWDNLVRHLADKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + KY+N+P+T L+HK + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120 >gi|78098714|gb|ABB20658.1| DnaG [Bifidobacterium breve UCC2003] Length = 123 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF++++I +AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQKEIFDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098712|gb|ABB20657.1| DnaG [Bifidobacterium scardovii] Length = 123 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 67/123 (54%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 H LD R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 HKLLDGRNFSQADCERFGCGYAPQGWDNLVRHLASKGFTQQEMLDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLFEDDAINAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098664|gb|ABB20633.1| DnaG [Bifidobacterium catenulatum] Length = 124 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 4/120 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRDFSQVDCARFGCGYAPRGWDNLVRHLADKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + KY+N+P+T L+HK + LY A + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYDDDQINAKYINTPDTQLYHKNQVLYGIDLAKKQI 120 >gi|78098706|gb|ABB20654.1| DnaG [Bifidobacterium boum] Length = 123 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 4/122 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRHLADKGFTQQEMLDAGLARRG--QHGIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R +PIR S G+ + FG R L +++ KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRATWPIRDSTGRTLGFGARKLYDDDTIAAKYINTPDTQLYRKTQVLYGIDLAKSSI 120 Query: 259 QK 260 K Sbjct: 121 VK 122 >gi|116689346|ref|YP_834969.1| zinc finger, CHC2-family protein [Burkholderia cenocepacia HI2424] gi|116647435|gb|ABK08076.1| zinc finger, CHC2-family protein [Burkholderia cenocepacia HI2424] Length = 119 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH-VKGDHL 74 P+ ++ + + K N CP H E S + +G + CF+C GD L Sbjct: 21 PVVEVLAR-LQLQPSKPNGAGYAQV-RCPIHGENHASLSIHFERGNWRCFACGEAGGDAL 78 Query: 75 SFLSALLGCSFIESVQR---LAAIAGV 98 G SF ++ + LA +A + Sbjct: 79 ELYRRARGLSFAQAARELDALATVANI 105 >gi|107022398|ref|YP_620725.1| Zinc finger, CHC2-type [Burkholderia cenocepacia AU 1054] gi|105892587|gb|ABF75752.1| Zinc finger, CHC2-type [Burkholderia cenocepacia AU 1054] Length = 111 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH-VKGDHL 74 P+ ++ + + K N CP H E S + +G + CF+C GD L Sbjct: 13 PVVEVLAR-LQLQPSKPNGAGYAQV-RCPIHGENHASLSIHFERGNWRCFACGEAGGDAL 70 Query: 75 SFLSALLGCSFIESVQR---LAAIAGV 98 G SF ++ + LA +A + Sbjct: 71 ELYRRARGLSFAQAARELDALATVANI 97 >gi|313157418|gb|EFR56840.1| mobilizable transposon, excision family protein [Alistipes sp. HGB5] Length = 294 Score = 70.3 bits (170), Expect = 9e-10, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 5/71 (7%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----AAIAG 97 P E+TPSF KG +Y F G L + L GC E+++RL A Sbjct: 32 LSPLRKERTPSFSVRYDKGLWYDFGLGEGGTLLQLVMRLEGCGMAEAIRRLRKGAADEVS 91 Query: 98 VP-LPVVDPKI 107 LP P+ Sbjct: 92 FQPLPTASPRE 102 >gi|261414703|ref|YP_003248386.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371159|gb|ACX73904.1| zinc finger CHC2-family protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 390 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 14/112 (12%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF-----HDEKTPSFHCNDSK 59 + +K + I+ + +D V+G C F H ++TPS ++ + Sbjct: 3 EEELKQFKAALSITTVA---MDL---GLPVVRGR--CRCFFPTRHAHGDRTPSVSFSEER 54 Query: 60 GFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKK 110 G + C+ C V+GD +S + + CSF+E++ L G L P+++ + Sbjct: 55 GTFRCWVCDDVRGDVISLVQFVKNCSFLEALNWLKETYGFLLRGAKPQVQNR 106 >gi|160889336|ref|ZP_02070339.1| hypothetical protein BACUNI_01759 [Bacteroides uniformis ATCC 8492] gi|237713376|ref|ZP_04543857.1| TraP [Bacteroides sp. D1] gi|262406752|ref|ZP_06083301.1| TraP [Bacteroides sp. 2_1_22] gi|293371472|ref|ZP_06617894.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] gi|298378064|ref|ZP_06988011.1| mobilizable transposon [Bacteroides sp. 3_1_19] gi|156861343|gb|EDO54774.1| hypothetical protein BACUNI_01759 [Bacteroides uniformis ATCC 8492] gi|229446615|gb|EEO52406.1| TraP [Bacteroides sp. D1] gi|262355455|gb|EEZ04546.1| TraP [Bacteroides sp. 2_1_22] gi|292633546|gb|EFF52107.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] gi|298265025|gb|EFI06691.1| mobilizable transposon [Bacteroides sp. 3_1_19] Length = 299 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+++ IPI++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IENMRQ-IPIADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPL 100 GD + + F+ + +A A +PL Sbjct: 60 GLGKGGDIFTLVGEFTRSGDFMAQARFIAETARMPL 95 >gi|282598661|ref|YP_003358758.1| gp55 [Mycobacterium phage Peaches] gi|255928188|gb|ACU41806.1| gp55 [Mycobacterium phage Peaches] Length = 137 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 17 ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76 I I +Y + K CPFH E+ PS + + + C +C VKGD L Sbjct: 9 IVQAIHRYHPDWEPPKDTGKDWIKCLCPFHAEEVPSAAVSFVRQAFNCLACGVKGDVLGL 68 Query: 77 LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 + S+ E+ +R+A L + + + Sbjct: 69 IKKQEEVSYAEA-ERIAE----ELSPGGNRTIPAKSERQS 103 >gi|168205265|ref|ZP_02631270.1| DNA primase [Clostridium perfringens E str. JGS1987] gi|170663075|gb|EDT15758.1| DNA primase [Clostridium perfringens E str. JGS1987] Length = 373 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 100/339 (29%), Gaps = 30/339 (8%) Query: 32 TNAVKGDYWACCPFHDE--KTPSFHCNDS------KGFYYCFSCHVKGDHLSFLSALLGC 83 G + A CPF + K S + Y CF C G+ + + L G Sbjct: 32 KPNGHGTFNAECPFCESSSKKLSLVVEANINGKTYTNSYRCFKCGEYGNAIGLYARLKGI 91 Query: 84 SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL-----IEVATDFFHHSLKNARDK 138 +++ LA V K K + ++ F L + Sbjct: 92 DKQTAIKELANDINVSKNKEVEKKIIDSKEHPSCLETADINSLDKVYRAFLDLL--PLYE 149 Query: 139 RLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198 L ERG+ I + K P S + + + + Sbjct: 150 SSLKNLRERGLTDDYIRLKKYRSLPRSYKERYAITDKLIEMGFNLEGIAGFYKDKYNHWT 209 Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYL 258 + + L PI++ ++ +F R K ++YL + K L Sbjct: 210 FSNSQGFL-IPIKTIDNKICSFQIRLDEKIGKMRYLYFTSSKYESGAKAL---------- 258 Query: 259 QKSIRKDVRRNSSSFIILVEG-YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK-LSPR 316 + N++ I + EG ++ + + + + + +L Sbjct: 259 --ACPSISYGNNTDTIYITEGVLKGDVATFFSNDTFISVPGVNSAIDILIDMLKTLNPIN 316 Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 V+C+D D KA+ ++ L N + L Sbjct: 317 TVICYDMDMYENDDVKKALIKLINILNENNIYCELKLWD 355 >gi|119383732|ref|YP_914788.1| hypothetical protein Pden_0981 [Paracoccus denitrificans PD1222] gi|119373499|gb|ABL69092.1| hypothetical protein Pden_0981 [Paracoccus denitrificans PD1222] Length = 380 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 14/119 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + +PI++++ + + G+ CP + F N G Sbjct: 1 MTRDDHRLDEAKA-MPIADVVAR---LELSGLVRTGGELVGPCPQCGGRD-RFGVNLKTG 55 Query: 61 FYYCFS-CH--VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 + C C KGD ++ + LG F +++ L P ++ + + Sbjct: 56 LFQCRKECGPHAKGDQIALVQHTLGMDFRAALEWLCG------PAQGLSDAERAERRRT 108 >gi|188994787|ref|YP_001929039.1| putative DNA primase [Porphyromonas gingivalis ATCC 33277] gi|188594467|dbj|BAG33442.1| putative DNA primase [Porphyromonas gingivalis ATCC 33277] Length = 295 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 2/116 (1%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 PF +E +PSF + +Y F G + + L GC+ +++ L + Sbjct: 34 SPFREESSPSFKVDYRVNLWYDFGSGEGGSIIDLVMKLHGCTLSQAIGLLENRVEISPLT 93 Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + + E + +++IE + + L+ +++++ + +R ++ Sbjct: 94 QNDFDRQAESGEE--MKIIEAVSLHHPNLLRYLQNRKIDCSVAKRYCREVHYQVKG 147 >gi|163845880|ref|YP_001633924.1| zinc finger CHC2-family protein [Chloroflexus aurantiacus J-10-fl] gi|222523597|ref|YP_002568067.1| zinc finger CHC2-family protein [Chloroflexus sp. Y-400-fl] gi|163667169|gb|ABY33535.1| zinc finger CHC2-family protein [Chloroflexus aurantiacus J-10-fl] gi|222447476|gb|ACM51742.1| zinc finger CHC2-family protein [Chloroflexus sp. Y-400-fl] Length = 341 Score = 69.9 bits (169), Expect = 1e-09, Method: Composition-based stats. Identities = 68/381 (17%), Positives = 117/381 (30%), Gaps = 79/381 (20%) Query: 15 IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFH-DEKTPSFHCNDSKG---FYYCFS--C 67 I + LI + V R Y CP H + +F S+ ++CFS C Sbjct: 9 IDLPALIERLGVRLHRYGR-----SYRCACPLHAGDNELAFSIYQSRSGQWRWHCFSGDC 63 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----------KEKIQTDL 117 GD ++F+ G + E+ Q L GV P P + + Q + Sbjct: 64 GD-GDAIAFVRRYYGVGYREACQML----GVT-PASAPSGPRSPQPPPVEPPSAQWQHTV 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 RL++ A +L + + YL +RG+ I LGY P Sbjct: 118 GRLVDQAV----QALWSPAGQAARAYLYQRGLTDALIRRAGLGYHP-------------- 159 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 + + + ++ P G + R LS E Sbjct: 160 ------AATRIRAETLGLDGDNPYYPAGIVIPYW-VEGDLWRVQVRRLSNTEPRYL---- 208 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 +L GA S+ ++L EG +DVL++ QA V + Sbjct: 209 ---------SLAGSSGA------PPYLIAPITSAKPLVLAEGPVDVLAIMQAAGDLVTAI 253 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG- 356 A +R + + + ++ A +A D + + Sbjct: 254 GTGATGCRAVRWIARCAVAPLVLA------AHDADEAGDAAAAYWCDALQPRCTRWRPTL 307 Query: 357 EDPDSFIRCYGKTAFEKLIVE 377 DP ++ G + I + Sbjct: 308 HDPAEMLQLGGLALVRQWIEQ 328 >gi|260591246|ref|ZP_05856704.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260537111|gb|EEX19728.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 296 Score = 69.5 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 29/152 (19%), Positives = 53/152 (34%), Gaps = 6/152 (3%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TINEIKA-ISIKDYLGS-MSIYPTKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 G + + L CS +++++ LP + K I +I +T+ Sbjct: 58 LDEGGSLIDLVMKLHNCSLVQAIELFNGKQN-NLPKLSIANSKTNSPSQSRIEIIS-STN 115 Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 H +L R + Sbjct: 116 LCHPNLMEYFTHRGINLNIAKKYCREIHYRIG 147 >gi|212694184|ref|ZP_03302312.1| hypothetical protein BACDOR_03710 [Bacteroides dorei DSM 17855] gi|224026242|ref|ZP_03644608.1| hypothetical protein BACCOPRO_02998 [Bacteroides coprophilus DSM 18228] gi|253572724|ref|ZP_04850124.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254882545|ref|ZP_05255255.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|317480884|ref|ZP_07939965.1| CHC2 zinc finger protein [Bacteroides sp. 4_1_36] gi|329965179|ref|ZP_08302110.1| CHC2 zinc finger domain protein [Bacteroides fluxus YIT 12057] gi|212663250|gb|EEB23824.1| hypothetical protein BACDOR_03710 [Bacteroides dorei DSM 17855] gi|224019478|gb|EEF77476.1| hypothetical protein BACCOPRO_02998 [Bacteroides coprophilus DSM 18228] gi|251837624|gb|EES65715.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|254835338|gb|EET15647.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|316902969|gb|EFV24842.1| CHC2 zinc finger protein [Bacteroides sp. 4_1_36] gi|328523542|gb|EGF50639.1| CHC2 zinc finger domain protein [Bacteroides fluxus YIT 12057] Length = 299 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 19/217 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MN + + I + + + V ++K NA YW PF DEKT SF + + Sbjct: 1 MNIEQS------KKLSIIDFLDKENVTLKKKKGNA----YWYLSPFRDEKTASFKVSKKE 50 Query: 60 GFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVV-DPKIEKKEKIQTDL 117 +Y ++ GD + + S +++ LA+ + + + I KE T + Sbjct: 51 NLWYDYAIKEGGDLVELVKRMYNKQSVSDALAYLASKSIATVDKAIETAIAAKEYTTTKM 110 Query: 118 IRL------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 + +F + R++ ++ G + Sbjct: 111 NDVKLLPLSNHSLLSYFSSRRIDITIGRMYCREIHYKVEQKHYYGIAFGNLSEGHEVRNP 170 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 + + ++ + A + N ++ F + L + Sbjct: 171 YFKGCIGHKDITLLAHTFNEWQNGCLVFEGFMDFLAY 207 >gi|78098658|gb|ABB20630.1| DnaG [Bifidobacterium asteroides] Length = 123 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRTFSQADSAHFGCGYAPRGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGE--SVKYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLYEDDGINAKYINTPDTQLYRKNQVLYGIDLAKDAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|288920041|ref|ZP_06414361.1| TOPRIM domain protein [Frankia sp. EUN1f] gi|288348605|gb|EFC82862.1| TOPRIM domain protein [Frankia sp. EUN1f] Length = 407 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND-SKG--FYYCF 65 +L ++ L + + + + + P H ++ PS +G + C Sbjct: 7 DAILDATDLATLATEKCG-TPQGSGR-RARWHCPNPAHPDEHPSMGIYQNQRGQWRWKCL 64 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 +C G + + C+ +E++ LA G+ Sbjct: 65 ACGEGGTAIDLVMITESCTVLEALHNLADRTGL 97 >gi|194246806|ref|YP_002004445.1| DNA primase [Candidatus Phytoplasma mali] gi|193807163|emb|CAP18602.1| DNA primase [Candidatus Phytoplasma mali] Length = 390 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 124/348 (35%), Gaps = 36/348 (10%) Query: 55 CNDSKGFYYCFSCH--VKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVVDPKIEKKE 111 N S+ Y CF C D L +F + Q L + L + + Sbjct: 43 VNHSQNMYKCFKCDNRFH-DIFDLYQELYQVNFNTAFQALINELDEIKLSPLIQNPHQFS 101 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLH---YYLDERGIDSHAIEMFKLGYAPDSRYS 168 + +++ + +++H+ LKN Y ++R ++ I FKLG AP + + Sbjct: 102 HLNKTKFKILTTSANYYHYLLKNYVPFNELALNYLQNQRQLNLTTINEFKLGLAPQTNSN 161 Query: 169 LREHLR------QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 + + F + + L I N ++ I + +I Sbjct: 162 YQFINILVNYLTKNNFDLDLVQFLNLAISTKNPHLKNFGLKDAFYNAIIIPKTALINQKI 221 Query: 223 RTLSKG--------ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274 + +S + KYL L LY F L ++ N+ + Sbjct: 222 QVISLKANLLKRQLNTPKYLEMKSNDLIKPRDYLYRLFEHLPFI----------NAKKQV 271 Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKL---SPRIVLCFDGDDPGLRAA 331 I+VE DV+ Q ++NV+S G T QL+ +++ + I++ D D G A Sbjct: 272 IIVESEFDVIKSYQHQLKNVISICGKDFTNMQLKQIFQYIPKNYEILIILDHDYGGKIQA 331 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESL 379 K + V ++L + + D F+ Y + ++ ++ Sbjct: 332 LKLY--LKLIQANYLVVKVIILPQYKSLDEFLDHYNLIELQLILNDAK 377 >gi|145708121|ref|YP_001165296.1| hypothetical protein RPRSA1_gp47 [Ralstonia phage phiRSA1] gi|139003910|dbj|BAF52424.1| conserved hypothetical phage protein [Ralstonia phage phiRSA1] Length = 934 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 13/121 (10%) Query: 8 IKDLLIHIPISNLIGQYVDWD------RRKTNAVKGDYWACCPFHDEKTPSFHC---NDS 58 I++L I + +L + + +R + Y P H +K PS + + Sbjct: 4 IEELKKRIDLHDL-AERLGIKRGPGAIKRGAGGDQALYH--SPLHADKNPSLSIFVNHPT 60 Query: 59 KGF-YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 G + S G + + G ++V+ L +P + E++EK + + Sbjct: 61 HGTGWKEHSTGDGGSCIDLVILARGGDASDAVKWLHEAYAIPFDKPAGQPERREKSKAEY 120 Query: 118 I 118 I Sbjct: 121 I 121 >gi|78098656|gb|ABB20629.1| DnaG [Bifidobacterium subtile] Length = 123 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L +L KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSQADCERFGCGYAPQGWDNLVRYLAAKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R +PIR S G+ + FG R L +++ KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRATWPIRDSTGRTLGFGARKLYDDDTIGAKYINTPDTQLYRKTQVLYGIDLAKSAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098710|gb|ABB20656.1| DnaG [Bifidobacterium coryneforme] Length = 123 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R F GYAP +L HL KGF+++++++AGL G YD Sbjct: 3 RKLLAGRTFTQADSTHFGCGYAPRGWDNLVRHLSTKGFTQQEMLDAGLARQGQR--GIYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R+ +PIR S G+ + FG R L + +S+ KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRVTWPIRDSTGRTLGFGARKLFEDDSIGAKYINTPDTQLYRKNQVLYGIDLAKDAI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|78098654|gb|ABB20628.1| DnaG [Bifidobacterium bifidum] Length = 123 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 4/123 (3%) Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYD 200 L R E F GYAP +L +L KGF+++++++AGL G YD Sbjct: 3 RKLLGGRNFSRADCERFGCGYAPQGWDNLVRYLASKGFTQQEMLDAGLARQGQR--GVYD 60 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESV--KYLNSPETILFHKGKNLYNFFGALNYL 258 FR R +PIR S G+ + FG R L + + KY+N+P+T L+ K + LY A + + Sbjct: 61 YFRGRATWPIRDSTGRTLGFGARKLYDDDQIAAKYINTPDTQLYRKTQVLYGIDLAKSSI 120 Query: 259 QKS 261 K Sbjct: 121 VKK 123 >gi|218131550|ref|ZP_03460354.1| hypothetical protein BACEGG_03170 [Bacteroides eggerthii DSM 20697] gi|217986482|gb|EEC52819.1| hypothetical protein BACEGG_03170 [Bacteroides eggerthii DSM 20697] Length = 287 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I ISN + Y +R+ +W P H EKT SF + +K +Y Sbjct: 2 TIQEIKA-IQISNFLASKGYEPINRKGNK-----WWYLSPLHTEKTASFKVDLTKNVWYD 55 Query: 65 FSCHVKGDHLSFLS---ALLGCS 84 F+ G+ + S Sbjct: 56 FALGKGGNIIDLAMQLYHTQNIS 78 >gi|31983522|ref|NP_858133.1| putative DNA binding protein [Lactobacillus delbrueckii subsp. lactis] gi|18077756|emb|CAD15748.1| putative DNA binding protein [Lactobacillus delbrueckii subsp. lactis] Length = 614 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 54/401 (13%), Positives = 104/401 (25%), Gaps = 61/401 (15%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68 DL + + I V D + + P H + PS + + + +CFSC Sbjct: 10 DLKGLVSLPEYIASVVSMDSKG------FFSCLNPNHPDNHPSMCLDPNHPQYVHCFSCG 63 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 V D A+ + KEK + + D + Sbjct: 64 VSYDLFD----------------CWALINDGVTETKKNSAGKEKPVYNFNAVASEIADHY 107 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 ++L + + RE L + + Sbjct: 108 GYALIGDPAND--------LYSVEPPLPEPPAEPAQTSTNFREQLEDWHANLNQTDYLQK 159 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 +A ++ + L I GQ + R L + + + Sbjct: 160 RGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKRDRYR 206 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306 + A + +VEG D LS+ Q V++ + Sbjct: 207 FPIGQAR------AYNIEALAKCKTVFIVEGQFDALSIMQESDVGAVATSTSQTRLIVKA 260 Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361 L+ + +P I+L D D G +A L G ++ +D + Sbjct: 261 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEALGFTCYVNPVNGDYKDANE 317 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 F+ + F + + + D + Sbjct: 318 FL-VKDREGFRQKLQHVINQPDNWLDNYYADIKKRHDYPDN 357 >gi|315607464|ref|ZP_07882460.1| DNA primase [Prevotella buccae ATCC 33574] gi|315250896|gb|EFU30889.1| DNA primase [Prevotella buccae ATCC 33574] Length = 296 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 12/177 (6%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + I I + +G + K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIDKIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120 G + + L CS I++++ + L K I + Sbjct: 58 LDEGGSIIDLVMKLHNCSLIQAIELFNGKQNI-LQKFSIANSKTNSPSQSHIEVVGSTNL 116 Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 ++F H N + + I + + + Sbjct: 117 CHPNLIEYFTHRGINLNIAKKYCREIHYRIGDRSFYAIGFPNNSYGYTLRNPYFKGC 173 >gi|253682887|ref|ZP_04863675.1| putative DNA primase [Clostridium phage D-1873] gi|253560901|gb|EES90362.1| putative DNA primase [Clostridium phage D-1873] Length = 341 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 90/307 (29%), Gaps = 36/307 (11%) Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 GD + + + F ++V+ L I G L + K++ + D++ + + A Sbjct: 68 GDIFTLVMEIKKYEFPQAVKYLHEILG--LKYIFNIQYIKKEEKKDILDVFKKA------ 119 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 K+ + + ++ P ++G + Sbjct: 120 -----MQKKHFNNDIDELKIYNEDICREIIQIP------YIGWIREGIMPFTQERFNIGY 168 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP-ETILFHKGKNLY 249 D + + + + GRTL K + + F K NLY Sbjct: 169 SRDKNRIAIPHRFWC------GKENEYVGVMGRTLVKNYDLLDIPKYFPLKAFPKSMNLY 222 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 Y+QK ++ II+ E VL + V+ G L Q+R+ Sbjct: 223 GLQENYKYIQK----------ANKIIVFEAEKSVLKAHSFLCRLGVALGGHELCPEQIRI 272 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L L I+ D D + + + LL + P K Sbjct: 273 LLGLDVEIIFAMDNDMDEQLSINMCNQVKSFRRTSYIYDKWGLLGEKDSPVDKGMKVFKA 332 Query: 370 AFEKLIV 376 + I Sbjct: 333 LYNNRIK 339 >gi|238025787|ref|YP_002910018.1| Zinc finger, CHC2-type [Burkholderia glumae BGR1] gi|237874981|gb|ACR27314.1| Zinc finger, CHC2-type [Burkholderia glumae BGR1] Length = 931 Score = 69.1 bits (167), Expect = 2e-09, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGF-YY 63 I +L I + +L + +R + Y P H++K+PS + G + Sbjct: 4 IDELKQRIDLHDLADRLGM--KRGRGGDRALYH--SPQHEDKSPSLSIFVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 S G + + G S ++V+ L G+P E++EK + D I Sbjct: 60 DHSADTGGSCVDLVMYARGGSVADAVRYLHDAYGIPTTAPAAAGERREKSKIDYI 114 >gi|10956542|ref|NP_039667.1| primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus] gi|7385176|gb|AAF61724.1|AF236060_1 primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus] Length = 688 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 109/401 (27%), Gaps = 60/401 (14%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68 DL + + I V D + + P H +K PS + + + +CFSC Sbjct: 10 DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSCG 63 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 V D + + + + KEK + + D + Sbjct: 64 VSYD-----------------RLIVGLLLMTAQRPRKNSTGKEKPVYNFNAVASEIADHY 106 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 ++L L+ + + R+ L + + Sbjct: 107 GYALIGDPANDLYSVEPPLPEPPAEPAQ------TQTSTNFRDQLEAWHANLNQTDYLQK 160 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 +A ++ + L I GQ + R L + +N Sbjct: 161 RGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHDRNR 207 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306 + A + +VEG D LS+ Q V++ + Sbjct: 208 FPIGQAR------AYNIEALAKCKTVFIVEGQFDALSIMQESGVGAVATSTSQTRLIVKT 261 Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361 L+ + +P I+L D D G +A L G ++ +D + Sbjct: 262 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEALGFTCYVNPVNGDYKDANE 318 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 F+ + F + + + D + + Sbjct: 319 FL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 358 >gi|256840915|ref|ZP_05546423.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256738187|gb|EEU51513.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 300 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + Y + W P+ E+TPSF N +K +Y F Sbjct: 6 IDAVRQ-MPLADFLARLGYEPVRSSGN-----ELWYIAPYRGERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|319641676|ref|ZP_07996359.1| DNA primase [Bacteroides sp. 3_1_40A] gi|317386650|gb|EFV67546.1| DNA primase [Bacteroides sp. 3_1_40A] Length = 314 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I ++ + I + +G+YW PF E +PSF+ + +K + Sbjct: 2 TIDEIKS-VSIVQF------LETEGYQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54 Query: 64 CFSCHVKGDHLSFLSAL 80 F + G+ ++ + + Sbjct: 55 DFGANSGGNIINLVQKM 71 >gi|254885336|ref|ZP_05258046.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254838129|gb|EET18438.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 171 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IP+ +++ Y ++ + Y PF + +PSF + +Y F G Sbjct: 7 NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFREENRWYDFGDGTYGR 63 Query: 73 HLSFLSALLGCSFIESVQRLAAI 95 + + + CSF ++++ L + Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86 >gi|302326135|gb|ADL25336.1| DNA primase domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 371 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 40 WACCPF-----HDEKTPSFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLA 93 C F H ++TPS ++ +G + C+ C V+GD +S + + CSF+E++ L Sbjct: 11 RCRCFFPTRHAHGDRTPSVSFSEERGTFRCWVCDDVRGDVISLVQFVKNCSFLEALNWLK 70 Query: 94 AIAGVPLPVVDPKIEKK 110 G L P+++ + Sbjct: 71 ETYGFLLRGAKPQVQNR 87 >gi|332142973|ref|YP_004428711.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] gi|332142982|ref|YP_004428720.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552995|gb|AEA99713.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553004|gb|AEA99722.1| DNA primase [Alteromonas macleodii str. 'Deep ecotype'] Length = 131 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPK----IEKKEKIQTDLIRLIEVATDFFHHSLK 133 F+E+++ LA G+ +P E+K++ Q D ++E FF H L+ Sbjct: 1 MEFDRLEFVEAIEELARYHGLEVPREKGSRPAMSEEKKQQQQDDYAVMEQVARFFQHQLR 60 Query: 134 NA-RDKRLHYYLDERGIDSHAIEMFKLGYAPD 164 K+ YL RG+ ++ +++GYAPD Sbjct: 61 QNGNSKKAIEYLKNRGLSGDIVKQWEIGYAPD 92 >gi|254994147|ref|ZP_05276337.1| DNA primase [Listeria monocytogenes FSL J2-064] Length = 115 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + ++ + L+++L F E P + + + L+ L+ + Sbjct: 3 FYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS----------- 51 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++ + KRF+ L ++K+E+E+++A + + + + ++ + +++ Q++ Sbjct: 52 PDEQGKTQFEDYIRSLKRFK-LEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLN 110 >gi|291280739|ref|YP_003497573.1| hypothetical protein DEFDS_P197 [Deferribacter desulfuricans SSM1] gi|290755441|dbj|BAI81817.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 447 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 10/111 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDR---RKTNAVKGDYWACCPFHDEKTPSFHCND 57 M Y + + L I + + ++ R + Y PF +EKTPSF + Sbjct: 1 MKYNKKLLDYLKTEINFKDFLIEFGYISPQDIRNSYLNSESYMCRTPFGNEKTPSFAISK 60 Query: 58 SKG---FYYCFS----CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 +Y FS H G + F+ S ES+ L G +P Sbjct: 61 KSDGVWVWYDFSVNGITHEGGTIIDFIQKYHNYSLSESINFLVEKLGNRIP 111 >gi|260592929|ref|ZP_05858387.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260535129|gb|EEX17746.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 296 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 10/88 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ I I++ ++ +W C P +E TPSF N + +Y Sbjct: 3 IQNIKQ-ISITDY------LQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYD 55 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRL 92 F GD + + AL C+ E++ L Sbjct: 56 FRTGEHGDIIDLVCALHRCTISEAIGLL 83 >gi|189461210|ref|ZP_03009995.1| hypothetical protein BACCOP_01857 [Bacteroides coprocola DSM 17136] gi|189432124|gb|EDV01109.1| hypothetical protein BACCOP_01857 [Bacteroides coprocola DSM 17136] Length = 300 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+T SF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|53711405|ref|YP_097397.1| hypothetical protein BF0114 [Bacteroides fragilis YCH46] gi|154490897|ref|ZP_02030838.1| hypothetical protein PARMER_00814 [Parabacteroides merdae ATCC 43184] gi|167762719|ref|ZP_02434846.1| hypothetical protein BACSTE_01077 [Bacteroides stercoris ATCC 43183] gi|189464450|ref|ZP_03013235.1| hypothetical protein BACINT_00792 [Bacteroides intestinalis DSM 17393] gi|198277359|ref|ZP_03209890.1| hypothetical protein BACPLE_03571 [Bacteroides plebeius DSM 17135] gi|212692161|ref|ZP_03300289.1| hypothetical protein BACDOR_01656 [Bacteroides dorei DSM 17855] gi|218131469|ref|ZP_03460273.1| hypothetical protein BACEGG_03087 [Bacteroides eggerthii DSM 20697] gi|265766678|ref|ZP_06094507.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|294647712|ref|ZP_06725274.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a] gi|294805912|ref|ZP_06764780.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298377056|ref|ZP_06987010.1| mobilizable transposon [Bacteroides sp. 3_1_19] gi|298483577|ref|ZP_07001753.1| mobilizable transposon excision protein [Bacteroides sp. D22] gi|301309299|ref|ZP_07215242.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] gi|313149951|ref|ZP_07812144.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|325299654|ref|YP_004259571.1| hypothetical protein Bacsa_2561 [Bacteroides salanitronis DSM 18170] gi|52214270|dbj|BAD46863.1| TraP [Bacteroides fragilis YCH46] gi|154088645|gb|EDN87689.1| hypothetical protein PARMER_00814 [Parabacteroides merdae ATCC 43184] gi|167699059|gb|EDS15638.1| hypothetical protein BACSTE_01077 [Bacteroides stercoris ATCC 43183] gi|189438240|gb|EDV07225.1| hypothetical protein BACINT_00792 [Bacteroides intestinalis DSM 17393] gi|198269857|gb|EDY94127.1| hypothetical protein BACPLE_03571 [Bacteroides plebeius DSM 17135] gi|212665282|gb|EEB25854.1| hypothetical protein BACDOR_01656 [Bacteroides dorei DSM 17855] gi|217986401|gb|EEC52738.1| hypothetical protein BACEGG_03087 [Bacteroides eggerthii DSM 20697] gi|263253055|gb|EEZ24531.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|292636955|gb|EFF55411.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CC 2a] gi|294446885|gb|EFG15484.1| CHC2 zinc finger domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298266040|gb|EFI07699.1| mobilizable transposon [Bacteroides sp. 3_1_19] gi|298270334|gb|EFI11919.1| mobilizable transposon excision protein [Bacteroides sp. D22] gi|300832744|gb|EFK63371.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] gi|313138718|gb|EFR56078.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313158589|gb|EFR57983.1| CHC2 zinc finger domain protein [Alistipes sp. HGB5] gi|324319207|gb|ADY37098.1| hypothetical protein Bacsa_2561 [Bacteroides salanitronis DSM 18170] Length = 300 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+T SF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 GD + FL F++ + +A A + + Sbjct: 60 GLGKGGDIFTLAGEFLQ---SDDFMKQAKFIAEAANMTV 95 >gi|256845762|ref|ZP_05551220.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|256719321|gb|EEU32876.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] Length = 561 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 54/361 (14%), Positives = 109/361 (30%), Gaps = 50/361 (13%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85 R+ N K + P H++K PS K CF+C D + +F Sbjct: 235 LQRKGIN-TKELFRCVSPEHEDKNPSMSFYKKKNKCTCFACGKNYDIFDLVKMEYGLKTF 293 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 E +++ + E E + K + RL+ + Sbjct: 294 PEQLKK--------VEEFMKNPELIEDANKTIYS-------------KKNIEIRLNSTIQ 332 Query: 146 ERGIDSH--AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 E+ ++ + E + R S ++L+++G S+E + + D D Sbjct: 333 EKKVEENKIYPEFYYYYRDCKKRISETDYLQKRGISKEVQDKYNIGYDTDFKEGKMKFPI 392 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 +I PI + R ++ +Y E +F+ Sbjct: 393 QAIIIPISKDS-----YTVRNINSASKFRYTKVGEAAIFN-------------------Y 428 Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG 323 ++ +N +VEG +D LS+ +AG + ++ + L + Sbjct: 429 WELEQNRKDTFYIVEGEIDALSIIEAGRK-SIALGSVNEVNLLVNKLKEDKFNNKFILML 487 Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 D+ ++ I I N L + +D + F+ + Sbjct: 488 DNDEKGKMWQEILYTKLKEIGINVEKSNALGKYKDANEFLIKDREKFLALFQEIEKENPW 547 Query: 384 M 384 Sbjct: 548 K 548 >gi|237710792|ref|ZP_04541273.1| TraP [Bacteroides sp. 9_1_42FAA] gi|317474117|ref|ZP_07933394.1| hypothetical protein HMPREF1016_00373 [Bacteroides eggerthii 1_2_48FAA] gi|229455514|gb|EEO61235.1| TraP [Bacteroides sp. 9_1_42FAA] gi|316909688|gb|EFV31365.1| hypothetical protein HMPREF1016_00373 [Bacteroides eggerthii 1_2_48FAA] Length = 299 Score = 68.4 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 13/216 (6%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+ + PI + + + + RR A Y + C +E TPSF N K ++ F Sbjct: 5 IEAMK-RFPIEDFLARLGHHPVQRR---ANAVWYRSPC--REEHTPSFKVNPEKNLWFDF 58 Query: 66 SCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRL 120 G+ + + F+ + +A +AG+P+ +P+ + + + Sbjct: 59 GEGKGGNIFALAGEFIKSSDFLTQAKYVAEVAGMPVQDYEPRNIVDTHRSDGHSFEDVEV 118 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 + + H L+ + + I A + E Sbjct: 119 LPLQNRALLHYLQERGIPSAVAIANCKEIHYTTHGKRYFAVAFGNEGGGYEIRNPFFKGC 178 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216 + LL G ++ Y+ F + L G+ Sbjct: 179 VPPKDVTLLSVGSDACNVYEGFMDYLSARALGIGGR 214 >gi|150003486|ref|YP_001298230.1| putative DNA primase [Bacteroides vulgatus ATCC 8482] gi|149931910|gb|ABR38608.1| putative DNA primase [Bacteroides vulgatus ATCC 8482] Length = 305 Score = 68.4 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IP+ +++ Y ++ + Y PF + +PSF + +Y F G Sbjct: 7 NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFREENRWYDFGDGTYGR 63 Query: 73 HLSFLSALLGCSFIESVQRLAAI 95 + + + CSF ++++ L + Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86 >gi|118578659|ref|YP_899909.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379] gi|118501369|gb|ABK97851.1| zinc finger, CHC2-family protein [Pelobacter propionicus DSM 2379] Length = 171 Score = 68.4 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 15/90 (16%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I PI+++I KG Y CCPFH+++ PS + Sbjct: 95 ISPEMIDQARQ-YPITSIIE-----------FSKGRYR-CCPFHEDRNPSMALYE--NHV 139 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +CF C+ D +S AL G +F E+V L Sbjct: 140 HCFVCNRTWDSISATMALDGVTFREAVLAL 169 >gi|262360745|gb|ACY57466.1| DNA primase [Yersinia pestis D106004] Length = 100 Score = 68.4 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVV--DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 F+ES++ LA + G+ +P + + + L +L+E + F+ SLK Sbjct: 1 MNYDRLEFVESIEELATMHGLEVPYEAGSGTTQIERHQRQSLYQLMESLSAFYQQSLKGQ 60 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPD 164 K+ YL RG+ F + Sbjct: 61 NAKQAREYLKHRGLSRRNHPTFCYRFCAP 89 >gi|300779292|ref|ZP_07089150.1| DNA primase [Chryseobacterium gleum ATCC 35910] gi|300504802|gb|EFK35942.1| DNA primase [Chryseobacterium gleum ATCC 35910] Length = 277 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 96/285 (33%), Gaps = 16/285 (5%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 +++ I I ++ + + K N Y+A +E+TPS + K + F Sbjct: 4 EEIKQKIGIRTVLESF-NLFPSKENRRTAFYFAI--DREERTPSLSVDFVKNRAFDFGTG 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL-IRLIEVA-TD 126 D +S + + CS ++++ LA G + +K +L +++ + Sbjct: 61 KSYDVISIVQQINQCSVSDALKYLA-RFGFSV----QNDIQKVDSNQELEYEILKTSEIR 115 Query: 127 FFH--HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 F L + R + E + + F +G+ DS E + Sbjct: 116 HFALVQYLTSRRVYEQKDLVREIHYKMNGKKYFGIGFLNDS--GGFEIRNKYSKICLSKK 173 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 + L+ +N+ F + + + + + S+ + E ++K Sbjct: 174 DVTLIKTQNNNFDEIAIFEGFFDYLTYRNMEKEQSSDY-LILNSTSMLFKVENELKKYNK 232 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQA 289 L+ + KS + +N ++ E Y D+ Sbjct: 233 IS-LFLDNDSNGKSVKSKIEKRYKNVEDCSVIYESYNDLNEWYCN 276 >gi|293370759|ref|ZP_06617305.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] gi|292634119|gb|EFF52662.1| CHC2 zinc finger domain protein [Bacteroides ovatus SD CMC 3f] Length = 230 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I ++ + I + +G+YW PF E +PSF+ + +K + Sbjct: 2 TIDEIKS-VSIVQF------LETEGFQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54 Query: 64 CFSCHVKGDHLSFLSAL 80 F + G+ ++ + + Sbjct: 55 DFGANSGGNIINLVQKM 71 >gi|237726719|ref|ZP_04557200.1| DNA primase [Bacteroides sp. D4] gi|229435245|gb|EEO45322.1| DNA primase [Bacteroides dorei 5_1_36/D4] Length = 306 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IP+ +++ Y ++ + Y PF + +PSF + +Y F G Sbjct: 7 NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFKQENRWYDFGDGTYGR 63 Query: 73 HLSFLSALLGCSFIESVQRLAAI 95 + + + CSF ++++ L + Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86 >gi|229142499|ref|ZP_04270987.1| Zinc finger, CHC2-like protein [Bacillus cereus BDRD-ST26] gi|228640945|gb|EEK97288.1| Zinc finger, CHC2-like protein [Bacillus cereus BDRD-ST26] Length = 199 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 10/124 (8%) Query: 9 KDLLIHIPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF- 65 + +PI + + +Y ++ N Y CPFHD+K S N S +C+ Sbjct: 5 DLIKSKLPIIDFLERYCGTTVRKKGKN-----YMCRCPFHDDKEDSMVVNISSDNCWCYA 59 Query: 66 SCHVKG--DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 C DH S L L G + E+ L + + + ++K+ Q + + ++ Sbjct: 60 GCGDGKQIDHFSGLMLLHGWTHTEAQNYLLKELNLNVTLNRKTMQKEIAKQKAIHKKMQQ 119 Query: 124 ATDF 127 D Sbjct: 120 IKDL 123 >gi|295105109|emb|CBL02653.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] Length = 202 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CC FH + PS ND+ +YYCF C GD + + L + ++ ++L G+ Sbjct: 33 CCLFHSDNHPSMKLNDT--YYYCFGCGANGDAIDLTAKLFDLTPRQAAEKLIHDFGLDPD 90 Query: 102 VV 103 Sbjct: 91 KP 92 >gi|237713495|ref|ZP_04543976.1| DNA primase [Bacteroides sp. D1] gi|262407280|ref|ZP_06083828.1| DNA primase [Bacteroides sp. 2_1_22] gi|229446477|gb|EEO52268.1| DNA primase [Bacteroides sp. D1] gi|262354088|gb|EEZ03180.1| DNA primase [Bacteroides sp. 2_1_22] Length = 318 Score = 67.6 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 37/265 (13%), Positives = 85/265 (32%), Gaps = 22/265 (8%) Query: 17 ISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I++ + + Y+ ++ N +W P H+E T SF N K +Y F G Sbjct: 41 IADFLAEKGYLPISKKGAN-----WWYLSPLHNENTASFKVNVDKNVWYDFGLGKGGGLA 95 Query: 75 SFLSALLGC-----SFIESVQRLAAIAGVPLPVVD-PKIEKKEKIQTDLIRLIEVATDFF 128 + + +F + L ++G+ PK ++ + + +A Sbjct: 96 TLV----NLLYHPNNFQD---YLHHLSGIRTSFPSTPKTTREGSETFSNVEVKSLANSAL 148 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + + + + +R E + + Sbjct: 149 LKYLGKRGIAQQVASQYCKEVHYQNRDKSYFAVGFPNRSGGYEIRNAYFKGCISPKDISV 208 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 + G+ ++ F + L + + I ++ +S+ YLN +T+ H + Sbjct: 209 ISKGNKDCHVFEGFIDFLSYVVLHGDCDAIVLNS-VINVPKSIDYLNRYDTVYCHLDNDK 267 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSF 273 A ++ + +V S + Sbjct: 268 AGHD-ATEQIRILCKGNVIDASEEY 291 >gi|254884673|ref|ZP_05257383.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837466|gb|EET17775.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 172 Score = 67.6 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IP+ +++ Y ++ + Y PF + +PSF + +Y F G Sbjct: 7 NSIPLGDILSHY-GYEPSRRYGGYDMYR--SPFRSDTSPSFKVFKQENRWYDFGDGTYGR 63 Query: 73 HLSFLSALLGCSFIESVQRLAAI 95 + + + CSF ++++ L + Sbjct: 64 AVDLVMRVENCSFPQAMKELGRM 86 >gi|29566077|ref|NP_817647.1| gp58 [Mycobacterium phage Bxz2] gi|29424802|gb|AAN01812.1| gp58 [Mycobacterium phage Bxz2] Length = 135 Score = 67.6 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 17 ISNLIGQYVD-WD--RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73 I +I +Y W+ R+ N CPFH ++TPS + + CF+C VKG Sbjct: 7 IVKVIHRYHPEWEPPRQGRNDW---MKTRCPFHGDETPSASISFKHNAFRCFACPVKGSA 63 Query: 74 LSFLSALLGCSFIESVQRLAAI 95 ++ + S+ E+ +R+A Sbjct: 64 VAIIKEQEEVSYAEA-KRIAEE 84 >gi|218778126|ref|YP_002429444.1| P4 alpha zinc-binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759510|gb|ACL01976.1| P4 alpha zinc-binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 333 Score = 67.6 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 63/192 (32%), Gaps = 28/192 (14%) Query: 27 WDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 + + G++ CP +++ F +G Y+C C GD + +L G + Sbjct: 17 LKKV-ASTHGGEFAGPCPSCGGEDR---FRVWPEQGRYWCRGCARSGDAIQYLWDFKGIA 72 Query: 85 FIESVQRLAA-------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF---HHSLKN 134 ++E+ L + PV PK E A+ F L Sbjct: 73 YMEACFALGQEPKATTGRLKLK-PVWAPKDAGIPNP-----SWHEKASAFLVWTQEQLWT 126 Query: 135 ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL------RQKGFSEEKIIEAGL 188 +L RGI I+ LG+ P Y RE ++ G + + GL Sbjct: 127 DEGGEARAFLHNRGIQDATIKKAGLGWNPTDAYRDREAWGLEPEIKENGRPKGLWLPKGL 186 Query: 189 LIDGDNSATSYD 200 +I + Sbjct: 187 VIPCRINEKPIR 198 >gi|39997265|ref|NP_953216.1| CHC2 zinc finger domain-containing protein [Geobacter sulfurreducens PCA] gi|39984155|gb|AAR35543.1| CHC2 zinc finger domain protein [Geobacter sulfurreducens PCA] Length = 171 Score = 67.6 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 15/90 (16%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I PI+++I KG Y CCPFH+++ PS + Sbjct: 95 ITQEMIDQARQ-YPITSIIE-----------FSKGRYR-CCPFHEDRNPSMALYE--NHV 139 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +CF C+ D +S AL G +F E+V L Sbjct: 140 HCFVCNRTWDSISATMALDGVTFREAVLAL 169 >gi|288801537|ref|ZP_06406986.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331525|gb|EFC70014.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] Length = 330 Score = 67.6 bits (163), Expect = 6e-09, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 8/115 (6%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y PF ++ PSF + K + Sbjct: 3 EEDLSRIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPFREDTHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----GVPLPVVDPKIEKKEKIQT 115 ++ G + L GC+ E+++ L A VP K+E I+ Sbjct: 59 YAEGKGGSIIDLCMRLKGCTLSEAIRILGQNAPDITHVPRRESVQGSSKQESIRQ 113 >gi|255014539|ref|ZP_05286665.1| DNA primase [Bacteroides sp. 2_1_7] Length = 314 Score = 67.6 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I ++ + I + +G+YW PF E +PSF+ + +K + Sbjct: 2 TIDEIKS-VSIVQF------LETEGYQYAYIHRGNYWYLSPFRAESSPSFNVSPTKNLWN 54 Query: 64 CFSCHVKGDHLSFLSAL 80 F G+ ++ + + Sbjct: 55 DFGASSGGNIINLVQKM 71 >gi|330815080|ref|YP_004358785.1| zinc finger CHC2-family protein [Burkholderia gladioli BSR3] gi|327367473|gb|AEA58829.1| zinc finger CHC2-family protein [Burkholderia gladioli BSR3] Length = 930 Score = 67.2 bits (162), Expect = 7e-09, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 11/114 (9%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L I + L + + R + Y P H++++PS G + Sbjct: 4 IDELKQRIDLHEL-AERLGLKR-GRGGERALYH--SPHHEDRSPSLSIYVDHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 S G + + G S ++++ L G+ + + ++ L Sbjct: 60 DHSADAGGSCVDLVMHARGGSLADALRYLHDSYGI---AATRPATAERRPKSTL 110 >gi|323126206|gb|ADX30671.1| gp58 [Mycobacterium phage Wonder] Length = 135 Score = 67.2 bits (162), Expect = 8e-09, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 7/82 (8%) Query: 17 ISNLIGQYVD-WD--RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDH 73 I +I +Y W+ R+ N CPFH ++TPS + + CF+C VKG Sbjct: 7 IVKVIHRYHPEWEPPRQGRNDW---MKTRCPFHGDETPSASISFKHNAFRCFACPVKGSA 63 Query: 74 LSFLSALLGCSFIESVQRLAAI 95 ++ + S+ E+ +R+A Sbjct: 64 VAIIKEQEEVSYAEA-KRIAEE 84 >gi|288801891|ref|ZP_06407333.1| mobilizable transposon, excision protein [Prevotella melaninogenica D18] gi|288335933|gb|EFC74366.1| mobilizable transposon, excision protein [Prevotella melaninogenica D18] Length = 326 Score = 67.2 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 4/95 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y P +E PSF + K + Sbjct: 3 EEDLSRIK-RYPIVEYLERK-GIKPVRKTPTYAMYR--SPLREETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 + G + + GC+ E+++RL A + Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRRLGQNASLD 93 >gi|323344386|ref|ZP_08084611.1| DNA primase [Prevotella oralis ATCC 33269] gi|323094513|gb|EFZ37089.1| DNA primase [Prevotella oralis ATCC 33269] Length = 296 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 12/166 (7%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIDEIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120 G + + L CS I++++ + LP + + I + Sbjct: 58 LDEGGSLIDLVKKLHNCSLIQAIELFNGKQNI-LPKLSIANSETNSPSQSRIEIIGSTFL 116 Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 ++F H N + + I + Sbjct: 117 CHPNLIEYFTHRGINLNIAKKYCKEIHYRIGDRSFYAIGFPNNSYG 162 >gi|269838276|ref|YP_003320504.1| P4 alpha zinc-binding domain-containing protein [Sphaerobacter thermophilus DSM 20745] gi|269787539|gb|ACZ39682.1| P4 alpha zinc-binding domain protein [Sphaerobacter thermophilus DSM 20745] Length = 220 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 16/122 (13%) Query: 10 DLLIHIPISNLI--GQYVDWDRRK--TNAVKGDYWACCPFHDEKTPSFHCND--SKGFYY 63 ++ I ++ ++ + R ++ CP+ + F G++ Sbjct: 96 EVRERADIVQVLTESGHMVYSTRGYSKRREAEEWAGPCPWCGGRD-RFRVWRGRDSGYW- 153 Query: 64 CFSCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 C C + GD ++ + F +V LA + G+PLP ++ + + + Sbjct: 154 CRQCGMAGDVIALVR---NLVPGCEDFYPAVGYLARMLGLPLPTTQNAQARRSRKRRPVT 210 Query: 119 RL 120 R+ Sbjct: 211 RI 212 >gi|312144663|ref|YP_003996109.1| DnaB domain protein helicase domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905314|gb|ADQ15755.1| DnaB domain protein helicase domain protein [Halanaerobium sp. 'sapolanicus'] Length = 462 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 4/172 (2%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +K + + S +E LL L+ +P + E L + + + Q ++ L + + Sbjct: 6 RSIKAQEEDRYSKKEYQLLGILLQYPDKIDEVADVLETKHFLDPQAQIIFDLLLKQYQQD 65 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ L + +++ ++ I +++ YQ+ +L R Sbjct: 66 NKISRTKLLIDLQGQNAVAKPEEIIERLTSGFNTVDELSPTIDLIKKDYQR--SLLNRAS 123 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 ++ + + E S +++ I+ +E EA++E F Sbjct: 124 SKIKELTQADDLSIDDYQAKAQEIIFQATSESNDLQKHIYNME--EALMESF 173 >gi|303245320|ref|ZP_07331604.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans JJ] gi|302493169|gb|EFL53031.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans JJ] Length = 549 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 101/361 (27%), Gaps = 59/361 (16%) Query: 32 TNAVKGDYWACCPFH--DEKTPSFHCNDS----KGFYYCFSCHVKGDHLSFLSALLGCSF 85 G++ A CP +++ + +G Y+C C GD + FL G S+ Sbjct: 17 KKKTGGEWAAPCPACGGEDR---CMIKPADHEGRGGYWCRQCGAYGDAIQFLRDYEGMSY 73 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA----------------TDFFH 129 +E+ + L G+ + + E A + H Sbjct: 74 VEACRHL----GIEAARATASSLPRPPKPSAGQGTFEAAPSVPPAELWTQKATDFAAWAH 129 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 L + + +L RG+ A++ ++LG+ P + + + + Sbjct: 130 QQLLAS--PKELAWLAARGLPLEAVQRYRLGWNPGEKGRSCLIRPRARWGLPPVEGKPDK 187 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVI-AFGGRTLSKGESVKYLNSPETI--LFHKGK 246 ++ RG VI F G + + PE F Sbjct: 188 SGKPTLKKTF-----------WIPRGLVIPHFAGTAPDSPVARLRIRRPEADRREFRAET 236 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQ 306 Y G+ R + ++VE +D L L + + + Sbjct: 237 KYYVIPGSNMDAMILGR------DARAFVVVESELDALMLHHVAGDLAGAVSVMTASVRK 290 Query: 307 LR----LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 + + I++ D + A + + G+DP Sbjct: 291 IEAGVLETLHDALAILVALDAEGKDGAGAKGCARWMASFPR----AKRWPVPVGKDPGEA 346 Query: 363 I 363 Sbjct: 347 F 347 >gi|190571837|ref|YP_001966529.1| putative primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus] gi|312984530|ref|YP_004035052.1| Putative primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|123967151|gb|ABM79765.1| putative primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus] gi|123967160|gb|ABM79773.1| putative primase-helicase [Shuttle cloning vector pDOJ4] gi|312281357|gb|ADQ62075.1| Putative primase-helicase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 688 Score = 66.4 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 55/401 (13%), Positives = 106/401 (26%), Gaps = 59/401 (14%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFSCH 68 DL I + I V D + + P H +K PS + + + +CFSC Sbjct: 9 DLKSLISLPEYIASVVSMDSKG------FFSCVNPNHPDKHPSMCVDQNHPQYVHCFSCQ 62 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 D A+ + KEK + + D + Sbjct: 63 ASYDLFD----------------CWALINDGVTETRKNSAGKEKPVYNFNAVAIEIADHY 106 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 ++L L A + ++R L S + Sbjct: 107 GYTLIGDPANNLPEPPLPEPEPEPAQTQ------TSNDSNIRAQLEAWHASLNQTDYLQK 160 Query: 189 LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNL 248 +A ++ + L I GQ + R + + + Sbjct: 161 RGITQTTAEIFNLGYSALTNSIIIPYGQDGYYVQRAI-------------NPIEKHDRYR 207 Query: 249 YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT--EYQ 306 + + + +VEG D LS+ Q V++ + Sbjct: 208 FPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSTSQTRLIVKT 261 Query: 307 LRLLWKL----SPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDPDS 361 L+ + +P I+L D D G +A L G ++ +D + Sbjct: 262 LQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKDANE 318 Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 F+ + F + + + D + + Sbjct: 319 FL-VKDREGFRQKLQHVINQPDNWLDKYYADIKNRHDYPDN 358 >gi|294776399|ref|ZP_06741877.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294449725|gb|EFG18247.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 296 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 18/111 (16%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+++ IP+++ + + + R Y A P+ +E+TPSF N +K +Y F Sbjct: 6 IENMR-RIPLADFLARLGHEPVRRSGNEQW---YRA--PYRNERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVP---LPVVDPKIEK 109 GD + F+ F+ + ++ A +P LP +PK + Sbjct: 60 GLGKGGDIFTLAGEFVR---SGDFMVQARFISEAAHMPLTALPAFEPKPPE 107 >gi|256026906|ref|ZP_05440740.1| hypothetical protein PrD11_02731 [Fusobacterium sp. D11] Length = 340 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 10/93 (10%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85 ++ N K + P H++K PS K CF+C D + +F Sbjct: 231 LQKKGIN-TKELFRCISPEHEDKNPSMSFYKKKNKCTCFACGKNYDIFDLVKMEYGLKTF 289 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 E +++ + + E + Sbjct: 290 PEQLKK--------VEEFMKNPKLIEDANKTIY 314 >gi|317481330|ref|ZP_07940399.1| hypothetical protein HMPREF1007_03518 [Bacteroides sp. 4_1_36] gi|316902540|gb|EFV24425.1| hypothetical protein HMPREF1007_03518 [Bacteroides sp. 4_1_36] Length = 296 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 12/108 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+++ IP+++ + + + R + W P+ +E+TPSF N +K +Y F Sbjct: 6 IENMK-RIPLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLSFLSAL-LGCSFIESVQRLAAIAGVP---LPVVDPKIEK 109 GD + F+ + ++ A +P LP +PK + Sbjct: 60 GLGKGGDIFTLAGEFVRSGDFMVQARFISEAAHIPLTALPAFEPKPPE 107 >gi|167752681|ref|ZP_02424808.1| hypothetical protein ALIPUT_00938 [Alistipes putredinis DSM 17216] gi|167659750|gb|EDS03880.1| hypothetical protein ALIPUT_00938 [Alistipes putredinis DSM 17216] Length = 50 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%) Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89 +E+TPSF + K ++ F G + + + GC+ E+V Sbjct: 8 EERTPSFSVSYDKNLWHDFGTGEGGSIIDLVPRMEGCAEGEAV 50 >gi|313158906|gb|EFR58285.1| mobilizable transposon, excision family protein [Alistipes sp. HGB5] Length = 285 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 13 IHIPISNLIGQYVDWDRRKTNAV--KGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 I I + R + Y P +E+TPSF + + +Y F Sbjct: 8 NRISIRDF------LAWRGIQPKYERNGYGMYLSPLREERTPSFKVDYVQNLWYDFGLGE 61 Query: 70 KGDHLSFLSALLGCSFIESVQRL 92 G L+ + L C E+V+RL Sbjct: 62 GGTLLTLVMRLERCDSREAVRRL 84 >gi|291513570|emb|CBK62780.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301] Length = 285 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%) Query: 13 IHIPISNLIGQYVDWDRRKTNAV--KGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHV 69 I I + R + Y P +E+TPSF + + +Y F Sbjct: 8 NRISIRDF------LAWRGIQPKYERNGYGMYLSPLREERTPSFKVDYVQNLWYDFGLGE 61 Query: 70 KGDHLSFLSALLGCSFIESVQRL 92 G L+ + L C E+V+RL Sbjct: 62 GGTLLTLVMRLERCDSREAVRRL 84 >gi|322384411|ref|ZP_08058097.1| hypothetical protein PL1_0943 [Paenibacillus larvae subsp. larvae B-3650] gi|321150769|gb|EFX44229.1| hypothetical protein PL1_0943 [Paenibacillus larvae subsp. larvae B-3650] Length = 319 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 101/380 (26%), Gaps = 83/380 (21%) Query: 19 NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68 +++ + +D R + A PF D+ TPSF +D G ++ F Sbjct: 7 DVLYELEQFDWRNVRPAVDSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 65 Query: 69 -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 G+ LSFL S+ E+ + L D + E + L Sbjct: 66 WTSGNFTKLLSFLMD---VSYREADEYLRRKY-----ENDEQQETPVLRRVRL------- 110 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 +R + G+ Sbjct: 111 -----------SAERPRKPVLHVGLLEEYRHDH----------------------PYLAS 137 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 T Y +N + P GQ++ R+++ + Sbjct: 138 RCITAGVQREMQTGYCPSKNAVTIPWFGPNGQLLNIKYRSVTGKKFWYVKGGR-----PI 192 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + +Y + R+ +VE +D L+L AGV V + G E Sbjct: 193 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINKE 240 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++ I + D DD G + I ++ L G +D + + Sbjct: 241 KAAVIIRSPIEEIFVMSDHDDVGQALKREVIRMLGGDLRVGVAGFPKRY---KDVNEVAQ 297 Query: 365 CYGKTAFEKLIVESLPLVDM 384 G + Sbjct: 298 AEGLQKLREYFERRKLCKKF 317 >gi|313608767|gb|EFR84583.1| DNA primase [Listeria monocytogenes FSL F2-208] Length = 113 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + ++ + L+++L F E P + + + L+ L+ + Sbjct: 1 FYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVIS----------- 49 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + ++ + KRF+ L ++K+E+E+++A + + + E ++ + +++ Q++ Sbjct: 50 PDEQGKPQFEDYIRSLKRFK-LEQKKKELEQELAAFSRENDKENEIRVMLEIVQLNRQLN 108 >gi|285018629|ref|YP_003376340.1| hypothetical protein XALc_1859 [Xanthomonas albilineans GPE PC73] gi|283473847|emb|CBA16349.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 120 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 13/101 (12%) Query: 2 NYPRDFIKDLLIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---ND 57 P ++ + ++ Q+V + G PF DE+ PSF N Sbjct: 27 RLPDNW----RDRLPDPADYYRQHVA--KLGRPNGSGWAQGVSPFRDEREPSFSVCQSNP 80 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 +G + F+ GD +SF L G F E+V L +AGV Sbjct: 81 -RGPWRDFATGETGDLVSFHMRLTGKPFKEAVADL--LAGV 118 >gi|226325743|ref|ZP_03801261.1| hypothetical protein COPCOM_03556 [Coprococcus comes ATCC 27758] gi|225205867|gb|EEG88221.1| hypothetical protein COPCOM_03556 [Coprococcus comes ATCC 27758] Length = 304 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 10/221 (4%) Query: 17 ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76 I +++ Q + +R+ N CPF E + N K + C C G L Sbjct: 12 ILDVV-QVLHLRKRRGNYYD------CPFCGETHGKLNINVEKNVFRCNRCDASGGMLKL 64 Query: 77 LSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133 + L + E+ Q++ G D +E+ T + IE + L Sbjct: 65 YADLHNVTLSEANQQIREALGKGEYRTDYIKATPVQEEKATAELAPIEEIHRTYQRMLSM 124 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 +++ L RG+ IE + P + K + Sbjct: 125 LTLNRKHQEDLQRRGLKPEQIEAQRYRSVPLFGMKKLVKRLAEEGYMVKGVPGFYRDTDG 184 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 N ++ + ++ PI S G + F R ++ KY+ Sbjct: 185 NWTINFKAENSGILIPIVSLDGFIQGFQIRVDHVTDTKKYI 225 >gi|295090304|emb|CBK76411.1| CHC2 zinc finger. [Clostridium cf. saccharolyticum K10] Length = 404 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 43/350 (12%), Positives = 91/350 (26%), Gaps = 31/350 (8%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 I+++ + +R+ N CPF + + N +K + C C G L Sbjct: 10 DITDV-ANLLRLHKRRGNYYD------CPFCGDTKGRLNINPAKNVFRCNRCDKSGGMLQ 62 Query: 76 FLSALLGCSFIESVQRLAAIAG---VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSL 132 + L ++ E+ + + E+KE+ + ++ + L Sbjct: 63 LYADLHNLTYREANEEIREALNKGEYRQVRQAKVQEEKEEPVQSKLAPLDERHRTYTELL 122 Query: 133 -KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 + L RG+ I+ + P Q+ + + Sbjct: 123 DRLPLYSVHRENLRSRGLTIEQIKERRYRSVPMYGLHKIAETLQESGCVLEGVPGFYRDP 182 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNSPETILFHKGKNLY 249 + ++ + + P+ S G++ A R + +S Sbjct: 183 EERWTLNFKTKNSGFLVPVESMDGKIQACQIRLDHPRDNNKYLWFSSAGYPHGVSS---- 238 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 S + + + L EG + + G + + Sbjct: 239 ----------GSPVHVIGDLDAENVYLTEGGLKGSIAHYLSGHTFICLAGVNMYRSLRPV 288 Query: 310 LWKLSPR----IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 L + R + FD D K G N Sbjct: 289 LEEFQQRKMKFLFEAFDMDKKLKTDCDKHYHKCSVCSEKGTPENCPYKVE 338 >gi|167589039|ref|ZP_02381427.1| zinc finger CHC2-family protein [Burkholderia ubonensis Bu] Length = 930 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 8/109 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I L HI + +L G+ + R + Y P H++++PS G + Sbjct: 4 IDQLKRHIDLHDLAGR-LGLKR-GRGGDRALYH--SPRHEDRSPSLSIYVNHPKHGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 S G + + G + ++V+ L G+P P +++ Sbjct: 60 DHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGLPPERPAPAERREKS 108 >gi|309390326|gb|ADO78206.1| DnaB domain protein helicase domain protein [Halanaerobium praevalens DSM 2228] Length = 460 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 64/174 (36%), Gaps = 4/174 (2%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 ++ + + + + + E LL L+ +P + E L + + + Q ++ L + Sbjct: 2 ETEVENRENNDRYNKNEYQLLGILLQYPDKIDEVADLLEVKHFLDPQAQIIFDQLLKQYQ 61 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + ++ L + + +Q+ ++ + I +++ YQ+ +L R Sbjct: 62 QDNQISRTKLLIDLQSQNAVDKAEQIIERLTSGFNTIDELKPTIDLIKKDYQR--SLLSR 119 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 ++ E E + +++ I+ +E E ++E F Sbjct: 120 ASAKLKELTEANDLTIDDYQARAQEIIFQATNESNDLEKHIYNME--EVLMESF 171 >gi|119383106|ref|YP_914162.1| hypothetical protein Pden_0352 [Paracoccus denitrificans PD1222] gi|119372873|gb|ABL68466.1| hypothetical protein Pden_0352 [Paracoccus denitrificans PD1222] Length = 380 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 9/130 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + +PI++++ + + G+ CP + F N G Sbjct: 1 MTQDDHRLDEAKA-MPIADVVAR---LELSGLVRTGGELVGPCPQCGGRD-RFGVNLKDG 55 Query: 61 FYYCFS-CH--VKGDHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTD 116 + C C +GD ++ + +LG F +++ L A G+ + K E + Sbjct: 56 VFTCRKECGPHARGDQIALVQHVLGLDFRGALEWLCGPAQGLSDAERAERRRKAEANRRK 115 Query: 117 LIRLIEVATD 126 + A + Sbjct: 116 QADIARRARE 125 >gi|167463684|ref|ZP_02328773.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 316 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 57/380 (15%), Positives = 102/380 (26%), Gaps = 83/380 (21%) Query: 19 NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68 +++ + +D R + A PF D+ TPSF +D G ++ F Sbjct: 4 DVLYELEQFDWRNVRPAVDSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 62 Query: 69 -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 G+ LSFL S+ E+ + L D + E + L Sbjct: 63 WTSGNFTKLLSFLMD---VSYREADEYLRRKY-----ENDEQQETPVLRRVRL------- 107 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 +R + G+ Sbjct: 108 -----------SAERPRKPVLHVGLLEEYRHDH----------------------PYLAS 134 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 T Y +N + P GQ++ R+++ + Sbjct: 135 RCITAGVQREMQTGYCPSKNAVTIPWFGPNGQLLNIKYRSVTGKKFWYVKGGR-----PI 189 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + +Y + R+ +VE +D L+L AGV V + G E Sbjct: 190 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINKE 237 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++ I + D DD G + I ++ L G R +D + + Sbjct: 238 KAAVIIRSPIEEIFVMSDHDDVGQALKREVIRMLGGDLRVGVAG---FPKRYKDVNEVAQ 294 Query: 365 CYGKTAFEKLIVESLPLVDM 384 G + Sbjct: 295 AEGLQKLREYFERRKLCKKF 314 >gi|260593282|ref|ZP_05858740.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260534839|gb|EEX17456.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 326 Score = 65.7 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 4/95 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + A Y C P +E PSF + K + Sbjct: 3 EEDLSRIK-RYSIVEYLERK-GVKPVRRTAAYALY--CSPLREETQPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 + G + + GC+ E+++RL A + Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRRLGQNASLD 93 >gi|75758760|ref|ZP_00738875.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904173|ref|ZP_04068268.1| DNA primase [Bacillus thuringiensis IBL 4222] gi|228931146|ref|ZP_04094082.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|74493770|gb|EAO56871.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228828428|gb|EEM74128.1| DNA primase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228855258|gb|EEM99822.1| DNA primase [Bacillus thuringiensis IBL 4222] Length = 190 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 11/80 (13%) Query: 29 RRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-----GFYYCFSCHVKGDHLSF------L 77 + K + D CPFHD+ S K ++CF C GD + F + Sbjct: 34 KYKKTSFTKDKLCICPFHDDNDASLGLFRDKHDKEVKIFHCFGCGAGGDIVQFHRRLINI 93 Query: 78 SALLGCSFIESVQRLAAIAG 97 + S + + +A + G Sbjct: 94 TEHRNISLEVASKEVANLYG 113 >gi|288801499|ref|ZP_06406951.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331580|gb|EFC70066.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] Length = 296 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 12/166 (7%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I ++ I I + +G + K G Y PF +E TPSF + ++ +Y F+ Sbjct: 2 TIYEIKA-ISIKDYLGS-MSIYPIKNYGYYGMYK--SPFRNEHTPSFKVDYNQNLWYDFA 57 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL------ 120 G + + L CS I++++ + LP + K I + Sbjct: 58 LDEGGSLIDLIMRLHNCSLIQAIELFNGKQNI-LPKLSIANSKTNSPSQSRIEVIGSTNL 116 Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + ++F H N + + I + Sbjct: 117 CHQNLIEYFTHRGINLNIAKRYCKEIHYRIGDRSFYAIGFPNNSYG 162 >gi|307564449|ref|ZP_07626990.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307346809|gb|EFN92105.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 324 Score = 65.3 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y P +E PSF + K + Sbjct: 3 EEDLSRIK-RYPIVEYLERK-GIKPVRKTPTYAMYR--SPLREETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 + G + + GC+ E+++ L A Sbjct: 59 YGEGRGGSIIDLCMRMEGCTLSEAIRHLGQNA 90 >gi|330858429|ref|YP_004414782.1| Gp32 [Propionibacterium phage PAD20] gi|260066547|gb|ACX30826.1| Gp32 [Propionibacterium phage PAD20] Length = 133 Score = 65.3 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 22/40 (55%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 +N + + CPFHD+ PS N KG +YC +C V G Sbjct: 26 SNPSRNEQHILCPFHDDHQPSMSINLDKGVWYCHTCGVGG 65 >gi|218263917|ref|ZP_03477865.1| hypothetical protein PRABACTJOHN_03555 [Parabacteroides johnsonii DSM 18315] gi|218222428|gb|EEC95078.1| hypothetical protein PRABACTJOHN_03555 [Parabacteroides johnsonii DSM 18315] Length = 294 Score = 65.3 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 64/227 (28%), Gaps = 16/227 (7%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN I I + + YW P+ +E++ SF ND Sbjct: 1 MNISEA------KRIRIVDFLQS---LGYAPVRVCNHQYWYLSPYREEQSASFKVNDWLN 51 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 +Y F G + + L S + E+++ + + V LPV I+ + Sbjct: 52 EWYDFGLSEGGGIIELVMQLYRLSTVHEALRTIESRLSVSLPVHTRMPRFDTDIEEAMKD 111 Query: 120 L------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 + + H + R + + + Sbjct: 112 VRVLDLNHHALLSYLHSRSIDTDIARKYCKEIHYELRKRHYFSIAFENVSGGYEIRNPYY 171 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 + +++ + + Y+ F + L F +G +A Sbjct: 172 KGCIRNKDISFIGHIAEERQKHVCVYEGFMDFLSFLTLQRKGDTVAC 218 >gi|239948287|ref|ZP_04700040.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922563|gb|EER22587.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 1380 Score = 65.3 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 50/317 (15%), Positives = 104/317 (32%), Gaps = 25/317 (7%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G ++ FS GD + + CSFI++ + L + G+ + + T L Sbjct: 921 GIWHDFSNDTGGDLFTLVQRENNCSFIQAKEYLQDMVGM--------VNNYQNKATWLKD 972 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 L A +F+ + + ++ + + + Y+P + + + + Sbjct: 973 L--AADEFYQKAKTRDQKEQYVEEAKIKYAQDLYDKSNSIKYSPPNNITRKYLSEHRSIE 1030 Query: 180 EEKIIEA--GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP 237 L + + LI R + G++ L K + K + Sbjct: 1031 TILTKYQLRQDLRTNMMWDNTSKQHYPALIAFARDTEGKITGGQSIYLHKETAAKADIAV 1090 Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 F K F A+ +++ I+ EG LSL +AG++ + Sbjct: 1091 NKRSFGKIT---GSFVAVQ--------QSNEQNNNITIIAEGVETALSLQEAGLKGNILC 1139 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 + K + RI++ D D + + G V+ ++ Sbjct: 1140 SLGVSNIKNYQP--KANERIIIAADNDGQEAPSLKAVNNAKKTLEQQGAIVSMIMPKEHG 1197 Query: 358 DPDSFIRCYGKTAFEKL 374 D + ++ GK A +L Sbjct: 1198 DFNDVLKTQGKEAVREL 1214 >gi|256842498|ref|ZP_05548000.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298374917|ref|ZP_06984874.1| mobilizable transposon excision protein [Bacteroides sp. 3_1_19] gi|301307991|ref|ZP_07213945.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] gi|256735854|gb|EEU49186.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|298267417|gb|EFI09073.1| mobilizable transposon excision protein [Bacteroides sp. 3_1_19] gi|300833461|gb|EFK64077.1| putative mobilizable transposon, excision protein [Bacteroides sp. 20_3] Length = 288 Score = 65.3 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IPI+ + + Y RR +YW P+ +E+T SF N K ++ Sbjct: 2 TIEEIKA-IPIAAFLARMGYEPARRRG-----DEYWYLAPYREERTASFQVNVRKEIWHD 55 Query: 65 FSCHVKGDHLS 75 F GD + Sbjct: 56 FGTGQGGDIFN 66 >gi|298373363|ref|ZP_06983352.1| mobilizable transposon [Bacteroidetes oral taxon 274 str. F0058] gi|298274415|gb|EFI15967.1| mobilizable transposon [Bacteroidetes oral taxon 274 str. F0058] Length = 324 Score = 64.9 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + + Y C P +E PSF + K Sbjct: 1 MK--EEDLSRIK-RYPIVEYLERK-GVKPVRRIPSYALY--CSPLREETHPSFKVDTQKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 + ++ G + L GC+ E+++RL A Sbjct: 55 LWIDYAEGRGGSIIDLCMRLEGCTLSEAIRRLGQNA 90 >gi|317485316|ref|ZP_07944196.1| hypothetical protein HMPREF0179_01549 [Bilophila wadsworthia 3_1_6] gi|316923442|gb|EFV44648.1| hypothetical protein HMPREF0179_01549 [Bilophila wadsworthia 3_1_6] Length = 516 Score = 64.9 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 98/367 (26%), Gaps = 63/367 (17%) Query: 33 NAVKGDYWACCPFHDE---KTPSFHCNDSK--------------GFYYCFSCHVKGDHLS 75 A + CP K+ F + G YC C GD + Sbjct: 17 KAQGNGFNGPCPLCGGEPGKSDRFIIWPDREHDLGHTCAVNHIPGVCYCRQCRFTGDSIK 76 Query: 76 FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 +L + G SF E+ L G+ + + + + F Sbjct: 77 YLMEIEGLSFREACAEL----GI------SNAPVRLRHRPAPREPRAESCTF-------- 118 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + E+ + + + + L +G +EE + L + Sbjct: 119 -TPQAWELPTEKWVAYATKLQAEAEQEIWNHPEALKWLAARGITEEAVRTYRLGYLVGEN 177 Query: 196 ATSYDR-FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGA 254 + R+ L + G+ + L + + L + N A Sbjct: 178 GKAGRYRSRSALGLAPKEQDGKAMTM---LFIPRGITIPLFAEDGRLINLRIRKPNADLA 234 Query: 255 LNYLQK---------------SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 +K +R + R S ++VEG +D + A + + Sbjct: 235 KEEGRKCLKYIELEGSCRRPLLLRPEAERARLSVYVIVEGELDAVLCHYATGGGIGALAV 294 Query: 300 TALTEYQL---RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 + T L + + R+++ D +D A + G Sbjct: 295 RSNTRKPDAEAHSLLEGAVRLLVALDYEDSLNGVAGLKWWMDTYPHA-----RRWPTPEG 349 Query: 357 EDPDSFI 363 +DP Sbjct: 350 KDPGEAY 356 >gi|32455757|ref|NP_862216.1| primase-helicase [Lactobacillus delbrueckii subsp. lactis] gi|6469511|gb|AAF13312.1|AF109691_5 primase-helicase [Lactobacillus delbrueckii subsp. lactis] Length = 572 Score = 64.9 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 104/404 (25%), Gaps = 67/404 (16%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFS-- 66 DL + + I V D + + P H +K PS + + + +CFS Sbjct: 10 DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSAT 63 Query: 67 CHVKGDHLS-FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 C D + A+ + KEK + + Sbjct: 64 CQASYDLFDCW-----------------ALINDGVTETRKNSTGKEKPVYNFNAVASEIA 106 Query: 126 DFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIE 185 D + ++L L A ++ ++ + Sbjct: 107 DHYGYTLIGDPANNLPEPPLPEPEPEPAQTSTNFRDQLEAWHANL----------NQTDY 156 Query: 186 AGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG 245 +A ++ + L I GQ + R L + Sbjct: 157 LQKRGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHD 203 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS------LG 299 + + + + +VEG D LS+ Q V++ L Sbjct: 204 RYRFPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSASQTQLI 257 Query: 300 TALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGED 358 + ++P I+L D D G +A L G ++ +D Sbjct: 258 VKTLQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKD 314 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 + F+ + F + + + D + + Sbjct: 315 ANEFL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 357 >gi|285018574|ref|YP_003376285.1| hypothetical protein XALc_1801 [Xanthomonas albilineans GPE PC73] gi|283473792|emb|CBA16295.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 128 Score = 64.9 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 9/91 (9%) Query: 12 LIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGFYYCFSC 67 + ++ Q+V + + G PF DE+ PSF N +G + F+ Sbjct: 41 RDRLPDPADYYRQHVA--KLGRSNGSGWAQGVSPFRDEREPSFSVCQSNP-RGPWRDFAT 97 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 GD +SF L G F E+V L +AGV Sbjct: 98 GETGDLVSFHMRLTGKPFKEAVADL--LAGV 126 >gi|255015053|ref|ZP_05287179.1| putative DNA primase involved in conjugation TraP [Bacteroides sp. 2_1_7] Length = 288 Score = 64.9 bits (156), Expect = 4e-08, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IPI+ + + Y RR +YW P+ +E+T SF N K ++ Sbjct: 2 TIEEIKA-IPIAAFLARMGYEPARRRG-----DEYWYLAPYREERTASFQVNVRKEIWHD 55 Query: 65 FSCHVKGDHLS 75 F GD + Sbjct: 56 FGTGQGGDIFN 66 >gi|285018408|ref|YP_003376119.1| hypothetical protein XALc_1630 [Xanthomonas albilineans GPE PC73] gi|283473626|emb|CBA16129.1| conserved hypothetical protein [Xanthomonas albilineans] Length = 128 Score = 64.5 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 9/91 (9%) Query: 12 LIHI-PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC---NDSKGFYYCFSC 67 + ++ Q+V + G PF DE+ PSF N +G + F+ Sbjct: 41 RDRLPDPADYYRQHVA--KLGRPNGSGWAQGVSPFRDEREPSFSVCQTNP-RGPWRDFAT 97 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 GD +SF L G F E+V L +AGV Sbjct: 98 GETGDLVSFHMRLTGKPFKEAVADL--LAGV 126 >gi|167945314|ref|ZP_02532388.1| hypothetical protein Epers_01835 [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 131 Score = 64.5 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 7/102 (6%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC- 67 ++L I + +L + + +R +G+Y P H +K+PS + SC Sbjct: 5 EELKQRIDLYDLAAK-LGLER---PQSRGNYK--SPRHPDKSPSLSIFADGTRWKDHSCD 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109 G + + + E+++RL I G+PL D + Sbjct: 59 DAAGTCIDLVMYVEESPVDEAIRRLHEIYGIPLDRPDAPRRE 100 >gi|59897254|gb|AAX12049.1| DNA primase [Enterobacteria phage T5] Length = 296 Score = 64.5 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 P HD+K PS + G +C SC G +I Sbjct: 26 CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66 Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + + +++ + + +T +L + D RGI S ++ + Sbjct: 67 ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 R++FPI + G+ I F Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR+++ KYL P+ + YN + +ILVEG Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184 Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 D+L+L G+ GT + + + +V+ D D G +AA Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L+ V LL G+DP + Sbjct: 245 AQLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276 >gi|220933146|ref|YP_002510054.1| DnaB domain protein helicase domain protein [Halothermothrix orenii H 168] gi|219994456|gb|ACL71059.1| DnaB domain protein helicase domain protein [Halothermothrix orenii H 168] Length = 460 Score = 64.5 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 13/171 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + +E LL L+ +P + E L + + + Q ++ L + F Sbjct: 9 QQFNNVQEQEFQLLGILLQYPQKIDEIADSLEVKHFQDPQAQLIYEILLNQFQRDNQISR 68 Query: 535 EEIHQRLCERGF----GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 ++ RL + G E +++L +G + +D+ + Q L K R Sbjct: 69 TKLFLRLKQDGVIKKPEETIERL-----TSGFSTVDELKPTIDLIKQNYQRRLLVKAARK 123 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + ++ + I A+ E + ++ I +E EA+++ F Sbjct: 124 I-QELAAKDLDIDDFQARA-QELIFEATNETTDLEKHIFTME--EALMKSF 170 >gi|298385236|ref|ZP_06994795.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] gi|298262380|gb|EFI05245.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] Length = 301 Score = 64.5 bits (155), Expect = 5e-08, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 5/181 (2%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98 W P+ +E TPSF N K ++ F G+ + + F+ + +A +A + Sbjct: 35 WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 94 Query: 99 PL----PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 PL P++ + + + ++ + + H L+ + + + Sbjct: 95 PLQDYEQRRTPEVRQPAGHSFEDVEVLPLQSRALLHYLQERGIPSAIAIANCKEMRYSTH 154 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 A + E + LL G Y+ F + L Sbjct: 155 GKRYFAVAFGNCGGGYEIRNPFFKGCVPPKDVTLLPSGSAVCNVYEGFVDYLSARALGIG 214 Query: 215 G 215 G Sbjct: 215 G 215 >gi|169825429|ref|YP_001695604.1| DNA primase [Lysinibacillus sphaericus C3-41] gi|168994706|gb|ACA42245.1| DNA primase (bacterial type) [Lysinibacillus sphaericus C3-41] Length = 459 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 39/210 (18%), Positives = 76/210 (36%), Gaps = 46/210 (21%) Query: 2 NYPRDFIKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCP--FHDEKTPSFHCN 56 ++ I +L +PI + ++G R+ Y CP H EK + Sbjct: 3 RISQETIDAVLS-VPIIDLANVMGD--KLIRKGKQ-----YTIPCPDPNHTEK-----VS 49 Query: 57 ------DSKGFYYCFSCHVKGD------HLSFLSALL-GCSFIESVQRLAAIAGVPLPVV 103 +K + CFSC V G+ + F+ SV+ +A + G+ + Sbjct: 50 DNAYIEPNKNVFKCFSCMVGGNSAVAYYAIKTYGTYDSKKHFLPSVRAVAELMGIQIKNE 109 Query: 104 D-----PKIEKKEKIQTDLIR-------LIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151 D P + ++ + +++V F +L R L+ ++++R Sbjct: 110 DGTISLPGATEPQRRFVKAVELEPKEPKILDVVYRAF-LNLCPIRQNHLNEWINKRRYSK 168 Query: 152 HAIEMFKLGYAP--DSRYSLREHLRQKGFS 179 + I+ L P D S+ + L G+ Sbjct: 169 NEIQTMMLKSVPTSDEWKSIYQTLHDLGYP 198 >gi|222529017|ref|YP_002572899.1| hypothetical protein Athe_1025 [Caldicellulosiruptor bescii DSM 6725] gi|222455864|gb|ACM60126.1| protein of unknown function DUF927 [Caldicellulosiruptor bescii DSM 6725] Length = 842 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 63/191 (32%), Gaps = 23/191 (12%) Query: 22 GQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSA 79 +Y+ + + T+ + A CPFHD++ SF G + C C G+ ++FL Sbjct: 21 SRYLSNMKKTGTDKIS----AQCPFHDDQHNSFWFRIQNGCWKCEAGCG-NGNAITFLER 75 Query: 80 LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139 + S E+ + L AG+ EKKEK L++ D + K + Sbjct: 76 IEKISRKEAYKILLKEAGL-----LKDDEKKEK-------LMKYTLDDYSKEKKLPIEFL 123 Query: 140 LHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSY 199 ++ + +R++ + K A + + Sbjct: 124 TKICEMKQ----EDYNKRYVSIYYKDDQGNTAGIRKRYYPSSKKRFAWVQGARVVPYGLW 179 Query: 200 DRFRNRLIFPI 210 + I Sbjct: 180 RLSEFNKDYII 190 >gi|237725733|ref|ZP_04556214.1| TraP [Bacteroides sp. D4] gi|229435541|gb|EEO45618.1| TraP [Bacteroides dorei 5_1_36/D4] Length = 297 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 5/181 (2%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98 W P+ +E TPSF N K ++ F G+ + + F+ + +A +A + Sbjct: 31 WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 90 Query: 99 PL----PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 PL P++ + + + ++ + + H L+ + + + Sbjct: 91 PLQDYEQRRTPEVRQPAGHSFEDVEVLPLQSRALLHYLQERGIPSAIAIANCKEMRYSTH 150 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214 A + E + LL G Y+ F + L Sbjct: 151 GKRYFAVAFGNCGGGYEIRNPFFKGCVPPKDVTLLPSGSAVCNVYEGFVDYLSARALGIG 210 Query: 215 G 215 G Sbjct: 211 G 211 >gi|91205236|ref|YP_537591.1| conjugal transfer protein TraA [Rickettsia bellii RML369-C] gi|157827425|ref|YP_001496489.1| conjugal transfer protein TraA [Rickettsia bellii OSU 85-389] gi|91068780|gb|ABE04502.1| Conjugal transfer protein TraA [Rickettsia bellii RML369-C] gi|157802729|gb|ABV79452.1| Conjugal transfer protein TraA [Rickettsia bellii OSU 85-389] Length = 1383 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 50/331 (15%), Positives = 101/331 (30%), Gaps = 21/331 (6%) Query: 53 FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 N SK G +Y FS GD + + C F+E+ + L + G+ + + KE Sbjct: 886 MKINGSKAGRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQDMVGISNNSKLLEDKIKE 945 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 + + + + K R + L+ D + K + Sbjct: 946 QFDQKVK--NQDQQAKYAEISKIKRAEELYEKSDSIIYTTPNNIAKKYLLEHRGIKKILT 1003 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 + ++ + ++ R ++ G + L+K + Sbjct: 1004 GYQLNNDLRTNMMWDSNSKQYYPALIAFARNKD----------GNITGGQSIYLNKETNN 1053 Query: 232 KYLNSPETILFHKGKNLY------NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 K F + + + N + KD + S+ I+ EG LS Sbjct: 1054 KADIEVNKRSFGRIRGSFVEINKTNEQQNVQSRNVQSSKDGNNSVSNITIIAEGVETALS 1113 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 + +AG++ + + RI++ D D + I + G Sbjct: 1114 IREAGIKGKILCSLGVSNIRNYEPIKG--ERIIIAADNDGKDAVSVNTVIKAQEELIRQG 1171 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 V + D + ++ G + KLI Sbjct: 1172 ATVAIIRPPEKGDFNDMLKSQGAESINKLIE 1202 >gi|282851793|ref|ZP_06261156.1| conserved domain protein [Lactobacillus gasseri 224-1] gi|282557035|gb|EFB62634.1| conserved domain protein [Lactobacillus gasseri 224-1] Length = 211 Score = 64.1 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 19/224 (8%), Positives = 54/224 (24%), Gaps = 22/224 (9%) Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS------- 463 I + D Y + + + R ++ H+ S Sbjct: 1 MIAGLNDPVAADLYLDKLARQTGVTRESLKVTFVRERRKLQRARNHQQAYQASTLMENIG 60 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + G S+ + LL I+ + + KL F Sbjct: 61 ETAEPKEAQAGTDSETRNPALDRLLYLFIHSDEARDYLLSR--QFLFPDERYAKLAEFWL 118 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + E +L + + + + + + ++ + Sbjct: 119 KYHQTHDEAEVKGFIDFIPE--------ELQGIIINMEMITMPPDYSKRELDDQLRALEK 170 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + Q ++ Q+ + K + + + + + Sbjct: 171 SK-----IDEQLNDLLNQLKEAQRKQDNSLELEIAQKVIALRRK 209 >gi|303247555|ref|ZP_07333826.1| zinc finger CHC2-family protein [Desulfovibrio fructosovorans JJ] gi|302491035|gb|EFL50929.1| zinc finger CHC2-family protein [Desulfovibrio fructosovorans JJ] Length = 511 Score = 64.1 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 97/319 (30%), Gaps = 49/319 (15%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----AAIAG---------VPLPVVDPKI 107 Y+C C GD + FL + E+ L AA +G V Sbjct: 51 RYFCRGCGRSGDAIQFLRDFQNLGYGEACHELGLTPAAPSGARTPVCQPVVEPTAPAWTP 110 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + E+ + + H L+N+ D L + ERG+ + F +G+ P+ Y Sbjct: 111 KTSERPNAKWQAQAQKLIRWAEHQLQNSPD-VLAWLAAERGLKATTAARFHVGWLPEDLY 169 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 R N + L+ P+ G+ R Sbjct: 170 RDRTAWGLPQE------------FKPNGKRRMLWLPHGLVLPVLDDAGRPARIKFRRP-- 215 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + ++ K LY L K+ V +++ I+VE +D L L Sbjct: 216 -----------SPRENEPKYLY-----LPSEPKNTAPLVITGTAAAWIVVESELDGLLLA 259 Query: 288 QA--GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 Q + NV++ +L S +L A KA P Sbjct: 260 QEAGDMVNVLALGSASLRPDAEAHARLESAPFILVA---LDADDAGDKAAWTWWATHYPP 316 Query: 346 NRVNFVLLSRGEDPDSFIR 364 ++ + G+DP R Sbjct: 317 EKIRVWPVPEGKDPTDAWR 335 >gi|166032166|ref|ZP_02234995.1| hypothetical protein DORFOR_01869 [Dorea formicigenerans ATCC 27755] gi|166027889|gb|EDR46646.1| hypothetical protein DORFOR_01869 [Dorea formicigenerans ATCC 27755] Length = 406 Score = 64.1 bits (154), Expect = 7e-08, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 73/221 (33%), Gaps = 10/221 (4%) Query: 17 ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF 76 I +++ Q + +R+ N CPF E + N K + C C G L Sbjct: 12 ILDVV-QVLHLRKRRGNYYD------CPFCGETHGKLNINVEKNVFRCNRCDASGGMLKL 64 Query: 77 LSALLGCSFIESVQRLAAIAGVPLPVVD--PKIEKKEKIQTDLIRLIEVATDFFHHSL-K 133 + L + E+ Q++ G D +E+ T + IE + L Sbjct: 65 YADLHNVTLSEANQQIREALGKGEYRTDYIKATPVQEEKATAELAPIEEIHRTYQRMLSM 124 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 +++ L RG+ IE + P + K + Sbjct: 125 LTLNRKHQEDLQRRGLKPEQIEAQRYRSVPLFGMKKLVKRLAEEGYMVKGVPGFYRDTDG 184 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 N ++ + ++ PI S G + F R ++ KY+ Sbjct: 185 NWTINFKAENSGILIPIVSLDGFIQGFQIRVDHVTDTKKYI 225 >gi|73541885|ref|YP_296405.1| hypothetical protein Reut_A2198 [Ralstonia eutropha JMP134] gi|72119298|gb|AAZ61561.1| conserved hypothetical protein [Ralstonia eutropha JMP134] Length = 934 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 51/390 (13%), Positives = 107/390 (27%), Gaps = 65/390 (16%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 R + L I + +L +D R P H + PS D+ + Sbjct: 10 RSWFDQLKRDIDLHDL-AVRLDLRRSGAKGNYH-----SPHHADSNPSLSIFDNGRAWKD 63 Query: 65 FSCHVKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIE 122 +S G + + +++ + L G+P+P +P+ +K E Sbjct: 64 WSTETGGSCIDLVRHCLPEVAGPLDAAKLLGDWYGMPMPDREPRSLPTKKSTE------E 117 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + + D + + + + Sbjct: 118 YIAE------RVRVDPAPAVAYLASRGIDETVTRRAIKAGTVGWNT-WHSQKVPAGEGGH 170 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 A I + + G+V+A R LN Sbjct: 171 GGAAAAFIVRE------------------AGTGRVVAVDLRYADPA-----LNGNVKTQC 207 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA- 301 H K Y + +R + + +VE ++ LS+ + + ++ Sbjct: 208 HGEKLEYGW----------TADAMRLRRAHTVYIVESPINALSVESCNLPDGCAAFAIRG 257 Query: 302 -LTEYQLRLLWKLSPRIVLCFD---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 ++ + R+++ D G GL AA+ + + I V+ Sbjct: 258 IANADKIDWAFLHGKRVLIALDHTDAVNERTGQRAGLAAAWTLSEALTAADIGSMFVDMQ 317 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 GED + ++ +G K + Sbjct: 318 DWEEGEDINDVLQQHGADELTKRLKRLESW 347 >gi|326633005|ref|YP_004306594.1| putative DNA replication primase [Enterobacteria phage SPC35] gi|321272199|gb|ADW80091.1| putative DNA replication primase [Enterobacteria phage SPC35] Length = 296 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 P HD+K PS + G +C SC G +I Sbjct: 26 CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66 Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + + +++ + + +T +L + D RGI S ++ + Sbjct: 67 ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 R++FPI + G+ I F Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR+++ KYL P+ + YN + +ILVEG Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184 Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 D+L+L G+ GT + + + +V+ D D G +AA Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L+ V LL G+DP + Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKDE 276 >gi|157803711|ref|YP_001492260.1| conjugal transfer protein TraA [Rickettsia canadensis str. McKiel] gi|157784974|gb|ABV73475.1| Conjugal transfer protein TraA [Rickettsia canadensis str. McKiel] Length = 288 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 97/298 (32%), Gaps = 22/298 (7%) Query: 53 FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 N +K G ++ FS GD + + C F+E+ + L + G+ Sbjct: 1 MKINGNKAGIWHDFSTGNGGDLFTLVQRETNCDFVEAKKYLQDMVGIS-----------S 49 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDER---GIDSHAIEMFKLGYAPDSRYS 168 ++ I + A + +K + +R + + + RY Sbjct: 50 TNKSKDIAVNLAANK--NQQIKTPAAQGDKIVKIKRAEILYEKSDALKYVMPSHVAKRYL 107 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 ++ + ++ + L + ++ LI R+ G + A L+K Sbjct: 108 SEHCEIKEVLTRYQL--SFDLSTNMMWDSHSKQYYPVLIAFARNKDGNITAGQSIYLNKD 165 Query: 229 ESVKYLNSPETILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + K F + + + I KD ++++ I+ EG LS+ Sbjct: 166 TNNKADIDVNKRSFGRIRGSFVEINKNNEQQNVQISKDGSNSTNNVTIIAEGLETALSIV 225 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 +AG++ + + L RI++ D D + Y I + G Sbjct: 226 EAGIKGKILCSLGVSNIRNYKPLKG--ERIIIAADNDAKEAVSVYTIIKAQDELISKG 281 >gi|301058240|ref|ZP_07199286.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300447657|gb|EFK11376.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 340 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 102/315 (32%), Gaps = 46/315 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 32 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 90 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 91 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 145 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 146 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 189 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 190 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 236 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 237 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 296 Query: 320 CFDGDDPGLRAAYKA 334 D D G A + Sbjct: 297 FLDRDPAGKTGALQY 311 >gi|46401857|ref|YP_006949.1| putative DNA replication primase [Enterobacteria phage T5] gi|45775035|gb|AAS77167.1| putative DNA replication primase [Enterobacteria phage T5] Length = 296 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 P HD+K PS + G +C SC G +I Sbjct: 26 CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66 Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + + +++ + + +T +L + D RGI S ++ + Sbjct: 67 ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 R++FPI + G+ I F Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR+++ KYL P+ + YN + +ILVEG Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184 Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 D+L+L G+ GT + + + +V+ D D G +AA Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKVVVILLDNDASGNKAAQAL 244 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L+ V LL G+DP + Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276 >gi|297618091|ref|YP_003703250.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] gi|297145928|gb|ADI02685.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] Length = 692 Score = 63.8 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 66/501 (13%), Positives = 134/501 (26%), Gaps = 76/501 (15%) Query: 46 HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDP 105 H +K PS N G Y+C C FL+ +LG E+ L L D Sbjct: 64 HGDKKPSAAVNVKSGVYHCSVCG-SFSPFRFLTEILGLPKDEASFTL-DQYRFELRFEDK 121 Query: 106 KIEKKEKIQTDLIRL-----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 +K + + E A++ + + + + YL RGI+ + ++ G Sbjct: 122 PAFEKVDNYSSAFVIPPKGFNEYASE--AAKMLSPDLEIVQEYLAARGINYELLTRYRWG 179 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 Y P+ + + I GQV+ Sbjct: 180 YVPEG---------------------------------FVPGQEECIVVPFIVNGQVVGI 206 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR + + + ++VEG Sbjct: 207 RGRARDGRKGGA-----------------------KGSRFVLWNLGALEGHDQAVIVEGE 243 Query: 281 MDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG-LRAAYKAI 335 D L +L G+ V S+ A + ++ + L DDP A+ Sbjct: 244 SDALRTIQALESCGIDVPVLSVPGATFRREWEREFQGIHTVYLIPQADDPSWNNFVANAV 303 Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI-VESLPLVDMLWKRETENRS 394 ++ + ++ + G+D ++R + +LI + E Sbjct: 304 KVLGDYRCVVVKLPWKRGEAGKDVCDWLRLHSDAELAELIPWRKTRSFFTTHEEMLELAE 363 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 P L + + ++ ++ + R K Sbjct: 364 QEIPWLINGLIARGDKVLVGGPQKAMKTFFILNLIRAAASGEDFLEYPGWSVHRPCKVLC 423 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD---IRYD 511 + + L+ + +++P + + + D Sbjct: 424 VEEEGSPVAFARRIKRLLSDIPPASVRWVHRQGVK--LDNPYWVDKLIEACEDYQPDLII 481 Query: 512 NNELQKLWSFLFSDFVEQKYF 532 + LQ++ S + E Sbjct: 482 FDPLQRIHSKVEDRAWEMGEV 502 >gi|218263510|ref|ZP_03477591.1| hypothetical protein PRABACTJOHN_03277 [Parabacteroides johnsonii DSM 18315] gi|218222633|gb|EEC95283.1| hypothetical protein PRABACTJOHN_03277 [Parabacteroides johnsonii DSM 18315] Length = 297 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA-LLGCSFIESVQRLAAIAGV 98 W P+ +E TPSF N K ++ F G+ + + F+ + +A +A + Sbjct: 31 WYRSPYREEHTPSFKVNPEKNLWFDFGEGKGGNIFALAGEFIQSGDFLTQARYVAEVADM 90 Query: 99 PLPVVDPK 106 PL +P+ Sbjct: 91 PLRDYEPR 98 >gi|10444280|gb|AAG17841.1|AF289050_16 TraP [Bacteroides thetaiotaomicron] Length = 288 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLS----FLSALLGCSFIESVQRLAAIAGVPL 100 E+TPSF N +K +Y F GD + FL F+ + +A A + + Sbjct: 35 GERTPSFRVNVAKQLWYDFGLGKGGDIFTLAGEFLQ---SGDFMAQAKFIAETANMTV 89 >gi|226327185|ref|ZP_03802703.1| hypothetical protein PROPEN_01050 [Proteus penneri ATCC 35198] gi|225204403|gb|EEG86757.1| hypothetical protein PROPEN_01050 [Proteus penneri ATCC 35198] Length = 245 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 98/282 (34%), Gaps = 39/282 (13%) Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + L G+DPDS +R GK +FEK + ++ L + L+ +T + +L + Sbjct: 1 MFLPEGDDPDSLVRREGKESFEKRMEQAHSLSEFLFDSLVPQVDLSTQEGNGKLYSLARP 60 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 I+ I + LR Y + + + R + + + + +L + Sbjct: 61 LIDKIPSETLRLYLLRELGSLTG------NPDIEQMDRLFGRTPVNHELSYQPTKLRTTP 114 Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQ--YQELADIRYDNNELQKLWSFLFSDFVE 528 + L+ LI +P + + L+ + L+ L S Sbjct: 115 M-------------RILIALLIQNPEFSKLVPPLEGLSTEKIAG---LSLFIELVSVCQA 158 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q +I + E FG+ L++L + +I ++ + + Sbjct: 159 QPGLNTGQIIELYRENKFGKQLEKLAMW----------NDIDIDEIAEKTFTDTLDHIFL 208 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + + IA+ +G + + ++ + ++ + Sbjct: 209 TAMDERLNTL---IAKERTEGLTQDEREEVQLI--IQARVKK 245 >gi|51512059|gb|AAU05258.1| DNA primase-like protein [Enterobacteria phage T5] Length = 296 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 P HD+K PS + G +C SC G +I Sbjct: 26 CLNPDHDDKHPSLRIDPETGIMHCLSCGFG----------KGIP---------SIYHYFN 66 Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + + +++ + + +T +L + D RGI S ++ + Sbjct: 67 ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 R++FPI + G+ I F Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR+++ KYL P+ + YN + +ILVEG Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184 Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 D+L+L G+ GT + + + +V+ D D G +AA Sbjct: 185 FDMLNLEDNGIDYASCCFGTHQFTSDNIADKFSPYIIAGVKIVVILLDNDASGNKAAQAL 244 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L+ V LL G+DP + Sbjct: 245 AKLIRTKTRLTPVVANFLLPEGKDPGDLNKEE 276 >gi|51245424|ref|YP_065308.1| hypothetical protein DP1572 [Desulfotalea psychrophila LSv54] gi|50876461|emb|CAG36301.1| unknown protein [Desulfotalea psychrophila LSv54] Length = 534 Score = 63.8 bits (153), Expect = 9e-08, Method: Composition-based stats. Identities = 47/380 (12%), Positives = 107/380 (28%), Gaps = 58/380 (15%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS--FHCNDSKGFYYCFSC 67 +++ I I ++ + CP S F G + C++C Sbjct: 5 EIMNTESIVRKIAAEHGLRKKGN-----RFTGPCPECGGSKTSDKFSILLDGG-FKCYAC 58 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAI-----------AGVPLPVVDPKIEKKE----- 111 + +GD +++L + ++ A A L K+ Sbjct: 59 NFRGDIITWLRKRESMNCPDAHDY-AGRDCRQKDSCPAAAHCRLGNGSAPATKRRPAYRR 117 Query: 112 ----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + + ++ + + + + ++ + L E+ +++ + A Sbjct: 118 PSRPRQEEEVQQTLPMVEPQYPKAVWVSWADALVQKAHEKLLETPEQLAY---LASRGID 174 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRF-RNRLIFPIRSSRGQVIAFGGRTLS 226 + G+ + I + L+ PI G + R Sbjct: 175 AEAVDRFSLGWLSHQQQVLKNKIGLPVDEGKDKLWVPEGLLIPIFDQSGSLHRIRIRR-- 232 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS- 285 SPE YN+ + V ++VE +D ++ Sbjct: 233 ---------SPEARAKFLPNLKYNW---MRGAGNMPMALVPEGKIRGAVIVEAELDAMAV 280 Query: 286 --LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 V SLG+ + + L + +P +++ D +D + A Sbjct: 281 ASAHVDVAAIAVGSLGSGVDPELDQ-LLEQAPVVLVALDAEDKAEKVAD-------MWKE 332 Query: 344 PGNRVNFVLLSRGEDPDSFI 363 + + G+DP Sbjct: 333 KYRHAKYYKTTIGKDPGEMF 352 >gi|303326921|ref|ZP_07357363.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] gi|302862909|gb|EFL85841.1| conserved hypothetical protein [Desulfovibrio sp. 3_1_syn3] Length = 558 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 109/399 (27%), Gaps = 93/399 (23%) Query: 28 DRRKTNAVKGDYWACCPFHDE---KTPSFHCNDSK--------------GFYYCFSCHVK 70 R+ + CP K+ F + G + C C Sbjct: 16 KRQGNG-----WNGPCPLCGGEPGKSDRFMVWPDRSESLGETCASHNITGIWSCRRCGAS 70 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF--- 127 GD +++L + G F ++ L G P+ + ++ + A+ + Sbjct: 71 GDTIAYLMKIDGLDFKAALAELGIEGGRPVHRRRRAPAEPHRV--------DAASAWTPR 122 Query: 128 -----------FHHSLKNARDKRLH------YYLDERGIDSHAIEMFKLGYAPDSRYSLR 170 + L + ++R+ +L RGID A+ +++GY P Sbjct: 123 EWPEPSDVWCAYAAKLLSEAEERIWKQPAALNWLAARGIDEEAVRAYRIGYLPAEGTRYP 182 Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG-- 228 R + + ++ P ++ G+V+ R + Sbjct: 183 GRYRARSALGLAPRTDDDGREHTKLFIPR-----GIVIPTVAANGRVLNLRFRRHKEDLA 237 Query: 229 ----ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 + ++ S + LF + R S + E +D + Sbjct: 238 PRAAKYMELEGSCKAPLFLRS--------------------SRPAPMSAYFVTEAELDAM 277 Query: 285 SLCQAG--VQNVVSSLGTALTEYQLRLLW-KLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 + A V ++ + + R+ + D D+PG Sbjct: 278 LIHHATGGVIGAMAVRTNRGKPDMASHARLREAVRVCIALDYDEPGADGVDFWERTYP-- 335 Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 G+DP + + +LP Sbjct: 336 -----ASLRWPTPEGKDPGEAYGMGV--DIREWVAAALP 367 >gi|242309823|ref|ZP_04808978.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239523824|gb|EEQ63690.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 386 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 57/383 (14%), Positives = 118/383 (30%), Gaps = 53/383 (13%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD--EKTPSFHCNDSKGFYYCF 65 ++ L IPI ++ + + +Y A H+ + PS + + CF Sbjct: 6 LEALKN-IPILEVLSALGSKELKGKFTTCLNYAA----HNNNDGKPSMYVYEKSNVCKCF 60 Query: 66 SCHVKGDHLSFLSALL-GCSFIESVQRLAAIAGVP-----------LPVVDPKIEK---- 109 +C++ G+ + ++ FI++ + L A +P +P + + Sbjct: 61 ACNLGGNTIE-VAKFAFNGDFIKACEFLHAHWNIPFLDDSNFTSVNVPRFEAPKREITYM 119 Query: 110 ---KEKIQTDLIRLIEVATDFFHH----SLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 KEK ++ E+ + LK + L + Sbjct: 120 EFSKEKEYQS-FKVNELIAGYGLESEEGKLKIVYSFIYRFSLMTEQSKKENYYKGRGINI 178 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGL-----LIDGDNSATSYDRFRNRLIFPIRSSRGQ- 216 P + + K + + L + + ++ + I P Sbjct: 179 PLDKIGFLSYGDIKSLEKSLLRYFPLEDLVRFKVFNKNRAGWNYSYDVAIVPFFDLYSDL 238 Query: 217 VIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276 + F R L+ + E +F G +Y +I + Sbjct: 239 ITGFSVRVLNPNN----KGAKELNVF-CGDIIYPMPF--------GLTYQTLKDKEWIWI 285 Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKA 334 EG++D LS + ++ VS + A L S +V+CFD D G ++ + Sbjct: 286 CEGHIDALSGIASSKKDNVSFISFAGVYTYKDSLLGLLKSKNVVICFDKDTAGEKSGSEL 345 Query: 335 IDLVLCHLIPGNRVNFVLLSRGE 357 + + I N+ Sbjct: 346 GEKLRKLGINTFIANWESQYNDL 368 >gi|255012110|ref|ZP_05284236.1| hypothetical protein Bfra3_23422 [Bacteroides fragilis 3_1_12] Length = 289 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 7/71 (9%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS----FLSALLGCSFIESV 89 + W P+ E+T SF N +K +Y F GD + FL F++ Sbjct: 17 RSGNELWYLAPYRGERTSSFRVNVAKQLWYDFGLGKGGDIFTLAGEFLQ---SDDFMKQA 73 Query: 90 QRLAAIAGVPL 100 + +A A + + Sbjct: 74 KFIAEAANMTV 84 >gi|301057548|ref|ZP_07198632.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300448356|gb|EFK12037.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 414 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 81 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 139 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 140 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 194 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 195 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 238 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 239 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 285 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 286 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 345 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 346 FLDRDPAGKTGALQVRERLFHH 367 >gi|60680973|ref|YP_211117.1| putative DNA primase [Bacteroides fragilis NCTC 9343] gi|60492407|emb|CAH07177.1| putative DNA primase [Bacteroides fragilis NCTC 9343] Length = 303 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 36/80 (45%), Gaps = 3/80 (3%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IP+ +++ +Y ++ + Y PF + +PSF ++ +Y F G Sbjct: 9 NSIPLEDILSRY-GYEPSRRYGGYDMYR--SPFRCDSSPSFKVFRNENRWYDFGDSSHGR 65 Query: 73 HLSFLSALLGCSFIESVQRL 92 + + + CSF ++++ + Sbjct: 66 VVDLVMRIQNCSFPQAMKEI 85 >gi|312792360|ref|YP_004025283.1| DnaB domain-containing protein helicase domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179500|gb|ADQ39670.1| DnaB domain protein helicase domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 272 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 58/145 (40%), Gaps = 10/145 (6%) Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E A++ ++ ++ + + L + +L++++ + + F E K + ++ Sbjct: 11 QEAEEAVIGAMLLSHEVISDVVEILTVEDFATPQLKEIFVAIINLFEENKPVDIITVSEK 70 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E+G + V + + Y + + + +SR+ + K Sbjct: 71 LREKG-------ILDAVGGSEYLTNLIINTPTTANATYYAKI---VKEKSISRKATKKTK 120 Query: 601 QIAQVTAKGEAEKTAILISILHEVH 625 ++ KGE +K L++ L+ ++ Sbjct: 121 ELLAAFEKGELQKAQQLLTELNNIN 145 >gi|31983516|ref|NP_858128.1| putative replication protein [Lactobacillus delbrueckii subsp. lactis] gi|18077750|emb|CAD13353.1| putative replication protein [Lactobacillus delbrueckii subsp. lactis] Length = 614 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 52/403 (12%), Positives = 103/403 (25%), Gaps = 65/403 (16%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-GFYYCFS-- 66 DL + + I V D + + P H +K PS + + + +CFS Sbjct: 10 DLKSLVSLPEYIASVVSMDSKG------FFSCLNPNHPDKHPSMCVDRNHPQYVHCFSAT 63 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 C D A+ + KEK + + D Sbjct: 64 CQASYDLFD----------------CWALINDGVTETRKNSTGKEKPVYNFNAVASEIAD 107 Query: 127 FFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 + ++L L A ++ ++ + Sbjct: 108 HYGYTLIGDPANNLPEPPLPEPEPEPAQTSTNFRDQLEAWHANL----------NQTDYL 157 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 +A ++ + L I GQ + R L + + Sbjct: 158 QKRGITQTTAEIFNLGYSPLTNSIIIPYGQDGYYVQRAL-------------NPIEKHDR 204 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS------LGT 300 + + + +VEG D LS+ Q V++ L Sbjct: 205 YRFPIGQVR------VYNAEALKECKTVFIVEGQFDALSIMQESGVGAVATSASQTQLIV 258 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS-RGEDP 359 + ++P I+L D D G +A L G ++ +D Sbjct: 259 KTLQKFKEQDPTINPTIILSMDNDRAGQKANRA---LQRDLEAHGFTCYVNPVNGDYKDA 315 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 + F+ + F + + + D + + Sbjct: 316 NEFL-VKDREGFRQKLQHVINQPDNWLDKYYADIKQRHDYPDN 357 >gi|255016418|ref|ZP_05288544.1| hypothetical protein B2_21136 [Bacteroides sp. 2_1_7] Length = 291 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 52/137 (37%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + I +++ + + + R + W P+ +E+TPSF N +K +Y F Sbjct: 6 IDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYLAPYRNERTPSFRVNVAKRLWYDF 59 Query: 66 SCHVKGDHLS----------------FLSALLGCSF-------------------IESV- 89 GD + F++ F +E+V Sbjct: 60 GLGKGGDIFTLAGEFARSGDFMAQARFIAETARMPFVASEKPLFLPEPSEPAFEGVEAVP 119 Query: 90 -------QRLAAIAGVP 99 + LA G+P Sbjct: 120 LLRSPLTEYLAER-GIP 135 >gi|53712526|ref|YP_098518.1| DNA primase [Bacteroides fragilis YCH46] gi|52215391|dbj|BAD47984.1| DNA primase [Bacteroides fragilis YCH46] Length = 301 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 ++ N W F +E PSF N ++ +Y F G+ + F+ G Sbjct: 24 KKQGNNV-----WYFSSFRNESEPSFKVNLARNLWYDFGLGKGGNLIEFIMEQHGID 75 >gi|206558487|ref|YP_002229247.1| hypothetical protein BCAL0083 [Burkholderia cenocepacia J2315] gi|198034524|emb|CAR50389.1| hypothetical phage protein [Burkholderia cenocepacia J2315] Length = 930 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 8/109 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGF-YY 63 I +L HI + +L + + R + Y P H +++PS G + Sbjct: 4 IDELKRHIDLHDLASR-LGLKR-GRGGDRALYH--SPQHADRSPSLSIYANHPKYGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 S G + + G + ++V+ L G+P P +++ Sbjct: 60 DHSADAGGSCIDLVIHARGGTVADAVRYLHDAYGLPSERPAPLERREKS 108 >gi|317505398|ref|ZP_07963322.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315663488|gb|EFV03231.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 190 Score = 63.0 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + ++ Y PF ++ PSF + K Sbjct: 1 MK--EEDLSRIK-RYPIVEYLERK-GIKPVRSTPAYALYR--SPFREDTHPSFKVDTEKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDLI 118 + ++ G + L GC+ +E+++ L P ++E + + L Sbjct: 55 LWIDYAESKGGSIIDLCMRLEGCTLLEAIRHLGRNT----PDYTACSPQRECVQETSKLE 110 Query: 119 RLIEVAT 125 + + A+ Sbjct: 111 SIRQAAS 117 >gi|182682933|ref|YP_001837057.1| putative DNA replication primase [Enterobacteria phage EPS7] gi|182630645|gb|ACB97577.1| putative DNA replication primase [Enterobacteria phage EPS7] Length = 296 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 98/332 (29%), Gaps = 87/332 (26%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 P HD+K PS + G +C SC G +I Sbjct: 26 CLNPDHDDKHPSLRIDPESGIMHCLSCGFG----------RGIP---------SIYHYFN 66 Query: 101 PVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + + +++ + + +T +L + D RGI S ++ + Sbjct: 67 ETQYRQSPRLSQVRKKISEIRNGST-----NLAIPESA-YLFEGDFRGISSKTLKKYFAF 120 Query: 161 YAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 R++FPI + G+ I F Sbjct: 121 QHQADWE------------------------------------GRIVFPITDAVGRNILF 144 Query: 221 GGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGY 280 GR+++ KYL P+ + YN + +ILVEG Sbjct: 145 LGRSINSSAPPKYLVKPKQVSPPIFPVRYN--------------------TPVLILVEGI 184 Query: 281 MDVLSLCQAGVQNVVSSLGTA------LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 D+L+L GV GT + + + +V+ D D G +AA Sbjct: 185 FDMLNLEDNGVDYASCCFGTHQFTSDNIADKFSPYIIAGVRVVVILLDNDASGNKAAQAL 244 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 L+ + LL G+DP + Sbjct: 245 AKLIRTKTRLTPVIGNFLLPEGKDPGDLNKEE 276 >gi|325281913|ref|YP_004254455.1| hypothetical protein Odosp_3316 [Odoribacter splanchnicus DSM 20712] gi|324313722|gb|ADY34275.1| hypothetical protein Odosp_3316 [Odoribacter splanchnicus DSM 20712] Length = 322 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P +E PSF + K + Sbjct: 3 EEDLSAIK-RYSIVEYLERK-GIKPVRKTPTYAMYR--SPLREETRPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L G +F E++ RL A Sbjct: 59 YAEGRGGSIIDLCMRLEGYTFSEAICRLGQNA 90 >gi|256839497|ref|ZP_05545006.1| DNA primase [Parabacteroides sp. D13] gi|256738427|gb|EEU51752.1| DNA primase [Parabacteroides sp. D13] Length = 341 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 5/73 (6%) Query: 12 LIHIPISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 + I+++ I Y+ G+ W PF E PSF N +Y F Sbjct: 14 KKRMTITDVKQIRISDYLHSLGYNPVKQQGGNLWYKSPFRQESEPSFKVNTELNLWYDFG 73 Query: 67 CHVKGDHLSFLSA 79 G+ ++ Sbjct: 74 AGKGGNIIALAQE 86 >gi|295135260|ref|YP_003585936.1| DNA primase [Zunongwangia profunda SM-A87] gi|294983275|gb|ADF53740.1| DNA primase [Zunongwangia profunda SM-A87] Length = 299 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 + DYW P +EKTPSF N +Y G+ + F A GCS E + + Sbjct: 30 SKIRNNDYWYRSPLREEKTPSFKVNRKLNRWYDHGLGKGGNMIDFGIAHYGCSVGEFLNK 89 Query: 92 LAAIAGVPLPVVD--PKIEKKEKIQTDLIRL 120 L + P+ + + E L + Sbjct: 90 LNGRSSFQAPLKSIPKRENEPEHQLKILKEV 120 >gi|312889576|ref|ZP_07749126.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM 18603] gi|311297924|gb|EFQ75043.1| zinc finger CHC2-family protein [Mucilaginibacter paludis DSM 18603] Length = 318 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 67/214 (31%), Gaps = 19/214 (8%) Query: 10 DLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ + ++ L+ + Y + + PS ND G +Y Sbjct: 9 EIREQVSLAGLLTRLGYYPVRASGKEHLYISMLRDS----DTNPSLAVNDDLGVWYDHGL 64 Query: 68 HVKGDHLSF-LSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL----IRL-- 120 G+ + F L+ SF E ++++ A++ +PL P E + + L ++ Sbjct: 65 GKGGNVIDFSLAYWPNLSFKEVLEKIVAVSNLPLTGQKPDAEPNTRRKHALKVPHYQIED 124 Query: 121 -----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 A + ++ + + A +R Sbjct: 125 IKELGNNPAITAYLQQRGVWEAAEGRLKEIYYYVEDEKKQRKQFFAAGWQNEVQGWEVRN 184 Query: 176 KGFSEEKIIEAGLLIDGDNSA-TSYDRFRNRLIF 208 K F + LI G+N ++ + N L + Sbjct: 185 KYFKGCLGHKGLTLIPGENDRLAVFEGYINYLSW 218 >gi|283851926|ref|ZP_06369202.1| P4 alpha zinc-binding domain protein [Desulfovibrio sp. FW1012B] gi|283572650|gb|EFC20634.1| P4 alpha zinc-binding domain protein [Desulfovibrio sp. FW1012B] Length = 426 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 17/78 (21%) Query: 23 QYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSK------GFYYCFSCHVKGDHL 74 +YV NA CP+ +++ F G + C C +GD + Sbjct: 12 KYVSGTSGGENA------GPCPWCGGEDR---FRVWPDHPSGATGGRFLCRGCGRQGDGI 62 Query: 75 SFLSALLGCSFIESVQRL 92 +FL G S+ ++ +RL Sbjct: 63 AFLMEREGLSYPDACKRL 80 >gi|295092381|emb|CBK78488.1| DNA primase (bacterial type) [Clostridium cf. saccharolyticum K10] Length = 126 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 23/46 (50%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 CPFHD+ TPS + + YCFSC D+L F+ L F Sbjct: 34 RCSCPFHDDHTPSMYLYNDSNLAYCFSCQKSWDNLEFIGEKLDLDF 79 >gi|209972945|ref|YP_002300392.1| gp21.95 [Bacillus phage SPO1] gi|209871265|gb|ACI91021.1| gp21.95 [Bacillus phage SPO1] Length = 344 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 101/339 (29%), Gaps = 42/339 (12%) Query: 32 TNAVKGDYWA-CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQ 90 + + Y C ++ + + K Y C +C KG + LS + S+ E+++ Sbjct: 19 SKGDQYSYKCRLC---NDWKDRLYVSFDKQVYKCHNCEAKGTVVGLLSDVNHISYSEALK 75 Query: 91 RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150 G P+ + E ++ + L+ + D Sbjct: 76 IFREYEG---ERRLPEDIEIEVYNRLIVGTTDE--------LEVPKTAFDLPEEFILLED 124 Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210 + K SR + Q + + I + + + + Sbjct: 125 AKGEAGRKAVRYIKSRGISLKTAEQNYLGYCEHGQYKNRIIMPDFEKGDLVYWQARTW-L 183 Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 + ++ R + + ++HK + + N Sbjct: 184 PKPKDRIKKKFYRKVLNPSLSEEDKERGLNVYHKSEIISNIDN--------------VLD 229 Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFDGDDPG 327 S I+ EG MD L + G ++++ Q L IV+ DGD Sbjct: 230 SGMAIICEGKMDSLKIG----PLGACIHGKSMSDTQFIKLVKNKDKIHTIVVMLDGD--- 282 Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 A +A+D+ + V V+L + +DP R Sbjct: 283 --ALQQALDICERLSKHFSDVYIVVLPKDKDPGDLSRSE 319 >gi|301061119|ref|ZP_07201913.1| conserved domain protein [delta proteobacterium NaphS2] gi|300444788|gb|EFK08759.1| conserved domain protein [delta proteobacterium NaphS2] Length = 522 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 189 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 247 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 248 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 302 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 303 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 346 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 347 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 393 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 394 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 453 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 454 FLDRDPAGKTGALQVRERLFHH 475 >gi|303246617|ref|ZP_07332895.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans JJ] gi|302491957|gb|EFL51835.1| P4 alpha zinc-binding domain protein [Desulfovibrio fructosovorans JJ] Length = 418 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDS---KGFYYCFSCHVKGDHLSFLSALLGCSFIES 88 + G+Y CP+ T F + G + C C +GD + FL + G S+ ++ Sbjct: 17 SATSGGEYAGPCPWCSG-TDRFRLWPAEGATGRWMCRGCGRQGDGIQFLRDMEGLSYPDA 75 Query: 89 VQRL 92 +RL Sbjct: 76 CKRL 79 >gi|255038912|ref|YP_003089533.1| DNA primase [Dyadobacter fermentans DSM 18053] gi|254951668|gb|ACT96368.1| DNA primase [Dyadobacter fermentans DSM 18053] Length = 311 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 18/41 (43%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 D+W PF DEKTPSF N YY GD + Sbjct: 26 RGQDHWYLSPFRDEKTPSFKVNARLNVYYDHGSGQGGDIID 66 >gi|301061547|ref|ZP_07202309.1| integrase core domain protein [delta proteobacterium NaphS2] gi|301062092|ref|ZP_07202793.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300443818|gb|EFK07882.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300444355|gb|EFK08358.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 893 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 560 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 618 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 619 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 673 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 674 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 717 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 718 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 764 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 765 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 824 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 825 FLDRDPAGKTGALQVRERLFHH 846 >gi|301062668|ref|ZP_07203290.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300443227|gb|EFK07370.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 828 Score = 62.2 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 495 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 553 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 554 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 608 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 609 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 652 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 653 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 699 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 700 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 759 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 760 FLDRDPAGKTGALQVRERLFHH 781 >gi|301057704|ref|ZP_07198777.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300448165|gb|EFK11857.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 894 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847 >gi|301060282|ref|ZP_07201147.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300445595|gb|EFK09495.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 894 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847 >gi|301057820|ref|ZP_07198889.1| integrase core domain protein [delta proteobacterium NaphS2] gi|301063010|ref|ZP_07203575.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300442891|gb|EFK07091.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300448131|gb|EFK11827.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 894 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR--- 674 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847 >gi|301059052|ref|ZP_07200011.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300446848|gb|EFK10654.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 894 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 105/322 (32%), Gaps = 46/322 (14%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCS 84 K + + W PF H+EK S H + S+ + FS G + F L + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMT 619 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYL 144 E + + G+ PK K+K + L+ + Sbjct: 620 MSEVARWMVKE-GIA-TANHPKSLVKQKEKAANAGTNPAIKIDLRRYLRTDHPELCR--- 674 Query: 145 DERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRN 204 RGI + G+ P + L Sbjct: 675 --RGISATTCRYLGCGFLPRRS--------------WAKTGSPLNSRLVFQVRGVRENGQ 718 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 L I + G+ ++ + + KY + P F K +YN L Sbjct: 719 GLQPVILTHTGRALSME----QEELNGKYWSYP----FKKAWEIYNQDNIL-----LDEA 765 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVL 319 + + + +IL EG+ DV L +AG +N V+ +G A++ Q+ L PRI+L Sbjct: 766 ALGQTNMFGLILTEGFFDVAKLVEAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILL 825 Query: 320 CFDGDDPGLRAAYKAIDLVLCH 341 D D G A + + + H Sbjct: 826 FLDRDPAGKTGALQVRERLFHH 847 >gi|325855339|ref|ZP_08171826.1| hypothetical protein HMPREF9303_1660 [Prevotella denticola CRIS 18C-A] gi|325483844|gb|EGC86795.1| hypothetical protein HMPREF9303_1660 [Prevotella denticola CRIS 18C-A] Length = 328 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 8/119 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + + Y P +E PSF + + Sbjct: 1 MTMKEEDLSRIK-RYPIVEYLERK-GIKPMRRTPAYALYR--SPLREETHPSFKVDTEQN 56 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA----GVPLPVVDPKIEKKEKIQT 115 + ++ G + L GC+ E+++ L A VP K+E I+ Sbjct: 57 LWIDYAEGRGGSIIDLCMRLEGCTLSEAIRILGQNAPDITHVPRRESLQGTSKQESIRQ 115 >gi|237711273|ref|ZP_04541754.1| TraP [Bacteroides sp. 9_1_42FAA] gi|229455117|gb|EEO60838.1| TraP [Bacteroides sp. 9_1_42FAA] Length = 299 Score = 61.8 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 56/196 (28%), Gaps = 26/196 (13%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + +PI + + + + D W P+ +E+TPSF N + ++ F Sbjct: 4 DRIRG-LPIEDFLAR---LGYSPVWRKRNDLWYNAPYREERTPSFKVNTDRNVWFDFGLG 59 Query: 69 VKGDHLSFLSALLG-CSFIESVQRLAAIAG---VPLP-------VVDPKIEKKEKIQTDL 117 GD + L G F+ + ++ +AG V LP ++ + +T L Sbjct: 60 RGGDIFTLAGELAGSTDFLTQAKYISEVAGGDFVSLPTPRPAKVRASEPAFQEVEQRTLL 119 Query: 118 IRLI-----------EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 ++ EVA K + + + Sbjct: 120 YDVLKGYLSERGIPSEVAARHCRQVSYRVHGKPYFAIGFQNVSGGWELRSRLFKGGIPPK 179 Query: 167 YSLREHLRQKGFSEEK 182 + Sbjct: 180 DISLVSRQGTPTDACD 195 >gi|78101045|pdb|1Z8S|A Chain A, Dnab Binding Domain Of Dnag (P16) From Bacillus Stearothermophilus (Residues 452-597) Length = 146 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 18/157 (11%), Positives = 52/157 (33%), Gaps = 14/157 (8%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + KL E LL ++ + + + R++ E + L +++++ + E Sbjct: 1 MAKKLLPAFQNAERLLLAHMMRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHE 59 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P + R+ +L + L + + ++ + L K Sbjct: 60 ADPGALISRIPG--------ELQPLASELSLLLIADDVSEQELEDYIRHVLNRPKWL--- 108 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + E++ + + + A + + E+ + Sbjct: 109 --MLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKML 143 >gi|315607637|ref|ZP_07882632.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315250820|gb|EFU30814.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 333 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ + + PI + + + Y P +E PSF + K + Sbjct: 2 KEDLSLIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREETHPSFKVDTEKNLWID 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + + CS E+++ L A Sbjct: 58 YAEGRGGSIIDLCMRMERCSLSEAIRLLGRNA 89 >gi|257451828|ref|ZP_05617127.1| primase-helicase [Fusobacterium sp. 3_1_5R] gi|317058383|ref|ZP_07922868.1| predicted protein [Fusobacterium sp. 3_1_5R] gi|313684059|gb|EFS20894.1| predicted protein [Fusobacterium sp. 3_1_5R] Length = 337 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 53/157 (33%), Gaps = 17/157 (10%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALLGCSF 85 +++ N + P H++K PS + C +C K D F+ +F Sbjct: 15 LEKKGINTKTA-FRCVSPQHEDKHPSMLYSKKYKKCTCLACGEKYDIFKFVGMEYNLPTF 73 Query: 86 IESVQRLAAIAGVP--LPVVDPKIEKKEKIQTDLIRLIEVA----------TDFFHHSLK 133 E ++++ P + ++ + K+ + L ++ E +F K Sbjct: 74 KEQLKKIQEFMKNPELIENINKTVYSKKNTEVSLHKVEEKIVPVEKKYPPLAYYFRDCKK 133 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170 N RGI + + +GY P + Sbjct: 134 NILKTDYLIN---RGISREIQDKYNIGYDPQFKNGTW 167 >gi|148727114|ref|YP_001285608.1| gp32 [Propionibacterium phage PA6] gi|91982938|gb|ABE68601.1| gp32 [Propionibacterium phage PA6] Length = 133 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 21/39 (53%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 N + + CPFHD+ PS N KG +YC +C + G Sbjct: 27 NPSRNEQHILCPFHDDHQPSMSINLDKGVWYCHTCGIGG 65 >gi|260593171|ref|ZP_05858629.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260534879|gb|EEX17496.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 333 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ + + PI + + + Y P +E PSF + K + Sbjct: 2 KEDLSLIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREETHPSFKVDTEKNLWID 57 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + + CS E+++ L A Sbjct: 58 YAEGRGGSIIDLCMRMERCSLSEAIRLLGRNA 89 >gi|213962117|ref|ZP_03390381.1| type III restriction enzyme, res subunit family [Capnocytophaga sputigena Capno] gi|213955123|gb|EEB66441.1| type III restriction enzyme, res subunit family [Capnocytophaga sputigena Capno] Length = 2020 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 16/177 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKT----NAVKGDYWACCPFHDEKTPSFHCNDS 58 + I++++ + I + + +R+ DY+ +EK F D Sbjct: 4 FSPQDIENIVNNTSIVDY---FFYLERQGRVKFDRQRGHDYYFL--TDNEK---FSV-DE 54 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 KG YY F G + L ++ E+V+ L + + K +K E + Sbjct: 55 KG-YYDFKAGKGGQIFKAVMELEKKTWKEAVEFLKDFSNTTIS-QSVKNQKTENKRPTPT 112 Query: 119 RLI-EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + E A + + +L Y RGI ++ + + + + Sbjct: 113 QHYTEKAPSTKITQVTIPNNDKLLEYFAGRGISKEILQQYAQQVHYRNNSDGKNYFG 169 >gi|157964606|ref|YP_001499430.1| conjugal transfer protein TraA [Rickettsia massiliae MTU5] gi|157844382|gb|ABV84883.1| Conjugal transfer protein TraA [Rickettsia massiliae MTU5] Length = 1378 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 47/318 (14%), Positives = 100/318 (31%), Gaps = 15/318 (4%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G +Y FS GD + + C F+E+ + L + GV + + KE+ + Sbjct: 894 GRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQNMVGVSNNSKLLEDKIKEQFDQKVKN 953 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + A + + ++ RY +K + Sbjct: 954 QDQQAK----------YTEISKIKRAISLYEKSDSIIYMTPNNIAKRYLSEHRGIKKILT 1003 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 ++ L ++ ++ LI R+ G + L+K + K Sbjct: 1004 GYQL--NNDLRTNMMWDSNSKQYYPALIAFARNKDGNITGGQSIYLNKDTNNKADIEVNK 1061 Query: 240 ILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 F + + + KD ++S+ I+ EG LS+ +AG++ + Sbjct: 1062 RSFGRIRGSFVEISKNNEQQNVQSSKDGNNSASNVTIIAEGLETTLSIAEAGIKGKILCS 1121 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 + RI++ D D + + + + G V+ + D Sbjct: 1122 LGVSNIRNYEPIKG--ERIIITADNDGKDAVSVHTVMKAQEELISKGAVVSIIRPPEEGD 1179 Query: 359 PDSFIRCYGKTAFEKLIV 376 + ++ G + LI Sbjct: 1180 FNDMLKSQGAESINNLIE 1197 >gi|284036884|ref|YP_003386814.1| hypothetical protein Slin_1970 [Spirosoma linguale DSM 74] gi|283816177|gb|ADB38015.1| hypothetical protein Slin_1970 [Spirosoma linguale DSM 74] Length = 306 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72 IPI+ ++ R+ ++ + P +EKT SFH N ++ F + GD Sbjct: 11 NTIPIAEIL---TKLGRKPSHTNNHKHRYLSPLRNEKTASFHLNTKTNRWHDFGEGIGGD 67 Query: 73 HLSFLSALLGCSF-----IESVQRLAAIA 96 ++F+ A L + ++++ + +A Sbjct: 68 TVNFVRAYLKATKEADTTSDALRWINNMA 96 >gi|325860417|ref|ZP_08173529.1| hypothetical protein HMPREF9303_0161 [Prevotella denticola CRIS 18C-A] gi|325482075|gb|EGC85096.1| hypothetical protein HMPREF9303_0161 [Prevotella denticola CRIS 18C-A] Length = 355 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 14/97 (14%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRK-----TNAVKGDYWACCPFHDEKTPSFHCNDSK 59 + + + I + +R+ Y PF +E PSF + K Sbjct: 36 EEDLSAIK-RYSIVDY------LERKGIRPVLRTPAYAMYR--SPFREETHPSFKVDREK 86 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 + ++ G + L GC+ E++ RL A Sbjct: 87 NLWIDYAEGRGGSIIDLYMCLEGCTLSEAICRLGQNA 123 >gi|120602099|ref|YP_966499.1| plasmid/phage primase [Desulfovibrio vulgaris DP4] gi|120562328|gb|ABM28072.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4] Length = 828 Score = 61.4 bits (147), Expect = 4e-07, Method: Composition-based stats. Identities = 56/353 (15%), Positives = 101/353 (28%), Gaps = 50/353 (14%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCS------FIESVQRLA 93 CP HD++ SF N + ++CF C GD + + G F + A Sbjct: 33 GLCPLHDDQNQSFSYNVDEDVFHCFRQCVEDGDLVDLYCNVRGLPLRSGEGFKAFRREFA 92 Query: 94 AIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSH 152 A AGV P +K EVA+D K+ + L+ Sbjct: 93 ADAGVGQPARRTPGEARKR----------EVASD------KSEAKREPRQNLEIPEAVYE 136 Query: 153 AIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIF 208 A+ HLR LL + Y F R++ Sbjct: 137 AMTPV-----TPDWGLRLLHLRGWSRETIDGYGVRLLSHFRRKSDLYSVFPLKSIERVVI 191 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 P+R ++G + ++ + K F + + Sbjct: 192 PVRDAQGVLRNLRC-----------YHALGKPQGDQPKI---FSWGRGHGASMLFPPASM 237 Query: 269 NSSSFIILVEGYMDVL-SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG 327 ++L EG D L +L + + E L ++ + +D D G Sbjct: 238 LRPGSVLLCEGEGDCLCALSRGLNAITQTGKPNEWPEDHANALAG--RKVTIAYDADQAG 295 Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 + A A + + + D ++ +G+ + + Sbjct: 296 QKYALAAAKNLARKGCAVTIIKWPAFMGLRDDGTWPEDHGQDLTDYFVKHGKD 348 >gi|312792348|ref|YP_004025271.1| hypothetical protein Calkr_0081 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179488|gb|ADQ39658.1| protein of unknown function DUF927 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 838 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CPFHD++ SF S G + C C G+ ++FL+ + G + E+ + L AG+ Sbjct: 36 AQCPFHDDQHNSFWFRVSNGCWKCEAGCG-GGNAVTFLARIEGITQKEAYRHLLKEAGL- 93 Query: 100 LPVVDPKIEKKEKIQTDLIR 119 + ++K K++ L Sbjct: 94 ----LDENKEKGKMKYTLED 109 >gi|256838532|ref|ZP_05544042.1| conjugal transfer protein TraP [Parabacteroides sp. D13] gi|256739451|gb|EEU52775.1| conjugal transfer protein TraP [Parabacteroides sp. D13] Length = 294 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 10/104 (9%) Query: 1 MNYPRDF-IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M I + I +++ + + + R + W P+ +E+TPSF N Sbjct: 2 MRRMERTDIDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYRAPYRNERTPSFRVNV 55 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPL 100 +K +Y F GD + F+ + +A A +PL Sbjct: 56 AKRLWYDFGLGRGGDIFTLAGEFARSGDFMAQARFIAETARMPL 99 >gi|312794921|ref|YP_004027843.1| hypothetical protein RBRH_00858 [Burkholderia rhizoxinica HKI 454] gi|312166696|emb|CBW73699.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 931 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 8/109 (7%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK-GF-YY 63 + +L I + +L + R K Y P H++K PS N +K G + Sbjct: 4 LDELKRLIDLHDL-ANRLGLKR-GHGGDKALYH--SPLHEDKNPSLSIYVNHAKYGTGWR 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 S +V G + + G S ++++ L +P+ +++ Sbjct: 60 DHSANVGGSCVDLVMHARGGSVADAIRYLHDAYAIPIERPAQLERREKS 108 >gi|288817846|ref|YP_003432193.1| hypothetical protein HTH_0529 [Hydrogenobacter thermophilus TK-6] gi|288787245|dbj|BAI68992.1| hypothetical protein HTH_0529 [Hydrogenobacter thermophilus TK-6] gi|308751443|gb|ADO44926.1| hypothetical protein Hydth_0526 [Hydrogenobacter thermophilus TK-6] Length = 650 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 43/121 (35%), Gaps = 18/121 (14%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDY--WACCPFHD-EKTPSFHCNDSKGFYY--- 63 + I I + + + Y CPFH ++TPSF Y+ Sbjct: 233 KIKNIEEIVREIKKRIKFKDLGLEGEDYGYYERISCPFHPPDRTPSFV------IYHNGD 286 Query: 64 -----CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 F D + L FI +V+ LA AG+ + V+ + +KK + + L Sbjct: 287 GDVGVDFHTGEAHDIIGIYQKLYEKDFITAVRELAQRAGIKV-VLSSEEKKKLQKEQALA 345 Query: 119 R 119 Sbjct: 346 D 346 >gi|88704446|ref|ZP_01102160.1| replicative DNA helicase [Congregibacter litoralis KT71] gi|88701497|gb|EAQ98602.1| replicative DNA helicase [Congregibacter litoralis KT71] Length = 479 Score = 61.1 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 59/183 (32%), Gaps = 10/183 (5%) Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 + + Q+ S R + + KL + E +++ L+ + ++ Sbjct: 5 SPQQSSYPRGSQQSQSNRPYDGDVARIKLQPQSIEAEQSVIGGLMISQDAWDSVAEMVSP 64 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + + + ++ + + + +L +L +LD A L Sbjct: 65 EDFYRPDHRLIFRQIRHLAEAAQPVDVVTLADQL------QLSGELDAAGGHAYLSELAE 118 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + Y Q + R R R E ++IA E +A LI + +Q Sbjct: 119 NTPSASNIRAYAQVV----RERSALRSLIEAAQEIADSGFTPEGRTSAELIDEAERLIMQ 174 Query: 628 IHQ 630 I + Sbjct: 175 IGE 177 >gi|282879672|ref|ZP_06288402.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] gi|281306341|gb|EFA98371.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] Length = 330 Score = 61.1 bits (146), Expect = 5e-07, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ + + PI + + D + A Y C P +E PSF + K + Sbjct: 3 KEDLSRIK-RYPIVEYLERK-DIKPVRRTAAYALY--CSPLREETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 + G + + GC E+++RL A Sbjct: 59 YGEGRGGSIIDLCIRMEGCMLSEAIRRLGQNA 90 >gi|309800317|ref|ZP_07694489.1| DNA primase [Streptococcus infantis SK1302] gi|308116064|gb|EFO53568.1| DNA primase [Streptococcus infantis SK1302] Length = 140 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 55/156 (35%), Gaps = 19/156 (12%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K EA +L ++ HP ++ Y+ D ++ E Q L+ L Sbjct: 4 TKQLTAVMRAEAHILYRMMEHP-LVLNDYRLREDFIFETPEFQTLYGLLID--------- 53 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ++++ E + ++ + + ++ LL++ Sbjct: 54 ----NGSISSEDLAHQTREVESAWYQVLALDLPPEMSPHELAE-----VEESRKRALLNQ 104 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +I+K++ + + G+ + + L ++ Sbjct: 105 ENLQIKKKVQEASHVGDTDTALEELERLIAQKRRME 140 >gi|237741457|ref|ZP_04571938.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|229429105|gb|EEO39317.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] Length = 354 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 45/358 (12%), Positives = 98/358 (27%), Gaps = 49/358 (13%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G+Y++ H+++ PS CF+C K D + Sbjct: 26 GEYLELK---GIDTSKLMRCFSKEHEDRNPSMSYFAPGKICKCFACGEKYDIFKLV---- 78 Query: 82 GCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRL 140 G+ K+E+ + + + ++ Sbjct: 79 -----------GEEYGIEDFKERAKKVEELYNNRELIKDANKTI---------YSKKNTF 118 Query: 141 HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-Y 199 G + E L Y + + + + + G+ Y Sbjct: 119 IELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGY 178 Query: 200 DRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQ 259 D + + + F R + K K +T +F N + Sbjct: 179 DPNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE--- 228 Query: 260 KSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVL 319 + N + +VEG +D LS+ + G +++ + + + + Sbjct: 229 -------KENINKDFYIVEGEIDALSIIETGRKSLALGSIQNIQLLIKKFEEDIPKNKIY 281 Query: 320 CF-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 D D G +A + L+ + N + +DP+ ++ K + L Sbjct: 282 LMLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337 >gi|300727846|ref|ZP_07061226.1| putative mobilizable transposon, excision protein [Prevotella bryantii B14] gi|299774894|gb|EFI71506.1| putative mobilizable transposon, excision protein [Prevotella bryantii B14] Length = 297 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 15/85 (17%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTN---AVKGDYWACCPFHDEKTPSFHCND 57 MN I I + +++ + YW C P+ +E TPSF + Sbjct: 1 MNISEA------KQIDIVDF------LEKKGIHYHHRKGNKYWYCSPYRNENTPSFKIDK 48 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLG 82 + +Y + GD + L Sbjct: 49 VRNDWYDYGAGEGGDLIDLCKKLYN 73 >gi|313204054|ref|YP_004042711.1| transposoN-related/mobilization protein [Paludibacter propionicigenes WB4] gi|312443370|gb|ADQ79726.1| putative transposon-related/mobilization protein [Paludibacter propionicigenes WB4] Length = 291 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 CPF ++ PS + K ++ + G + + L CS +++ L Sbjct: 34 CPFREDNNPSMKVDYVKNIWFDHGTGMGGTLIDLVMKLEQCSEYDAIMAL 83 >gi|237745149|ref|ZP_04575630.1| conserved hypothetical protein [Fusobacterium sp. 7_1] gi|229432378|gb|EEO42590.1| conserved hypothetical protein [Fusobacterium sp. 7_1] Length = 354 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 99/357 (27%), Gaps = 47/357 (13%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G+Y++ H++K PS CF+C K D + Sbjct: 26 GEYLELK---GIDTSKLMRCFSKEHEDKNPSMSYFVPGKICKCFACGEKYDIFKLV---- 78 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141 G+ +++ K +L E+ D + ++ Sbjct: 79 -----------GEEYGIE------DFKERAKKVDELYNHRELIED--ANKTIYSKKNTFI 119 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YD 200 G + E L Y + + + + + G+ YD Sbjct: 120 ELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGYD 179 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 + + + F R + K K +T +F N + Sbjct: 180 PNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE---- 228 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 + N + +VEG +D LS+ + + + + + + + Sbjct: 229 ------KENINKDFYIVEGEIDALSIIETDRKALALGSIQNIQLLIRKFEEDIPKNKIYL 282 Query: 321 F-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 D D G +A + L+ + N + +DP+ ++ K + L Sbjct: 283 MLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337 >gi|15081515|ref|NP_150028.1| hypothetical protein PCP35 [Clostridium perfringens str. 13] gi|15076748|dbj|BAB62473.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 453 Score = 61.1 bits (146), Expect = 6e-07, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I L IPI ++ + +D +R C EKT S N K ++Y F Sbjct: 103 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 154 Query: 67 CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F+S G S +S+ RLA + G+ Sbjct: 155 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 190 >gi|154483273|ref|ZP_02025721.1| hypothetical protein EUBVEN_00974 [Eubacterium ventriosum ATCC 27560] gi|149735783|gb|EDM51669.1| hypothetical protein EUBVEN_00974 [Eubacterium ventriosum ATCC 27560] Length = 205 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + F + L G E+ RLA GV K Sbjct: 6 RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFQE 74 >gi|323344122|ref|ZP_08084348.1| hypothetical protein HMPREF0663_10884 [Prevotella oralis ATCC 33269] gi|323094851|gb|EFZ37426.1| hypothetical protein HMPREF0663_10884 [Prevotella oralis ATCC 33269] Length = 128 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 4/94 (4%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + + + Y PF E PSF + K Sbjct: 1 MKMKEEDLSLIK-RYPIVAYLERK-GFKPVRRTPTYAMYR--SPFRAEIHPSFKVDTQKN 56 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 + ++ G + L C+ E++ RL Sbjct: 57 LWIDYAEGRGGSIIDLCMRLENCTLSEAIYRLGQ 90 >gi|163815812|ref|ZP_02207183.1| hypothetical protein COPEUT_01992 [Coprococcus eutactus ATCC 27759] gi|158448953|gb|EDP25948.1| hypothetical protein COPEUT_01992 [Coprococcus eutactus ATCC 27759] Length = 205 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + F + L G E+ RLA GV K Sbjct: 6 RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFQE 74 >gi|266624087|ref|ZP_06117022.1| DNA primase [Clostridium hathewayi DSM 13479] gi|288864083|gb|EFC96381.1| DNA primase [Clostridium hathewayi DSM 13479] Length = 430 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 53/426 (12%), Positives = 100/426 (23%), Gaps = 61/426 (14%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK-----GFYYCFSCHVK 70 IS++ + K + CPF + + K Y+CF C Sbjct: 3 NISDVA----NLLGIKRLTEGNSFNVVCPFCGDTRGKMNFRIVKDGELANTYHCFKCGAH 58 Query: 71 GDHLSF---LS-----ALLGCSFIESVQRLAAIAG---------------VPLPVVDPKI 107 G+ L+ L ++ E L AG + + Sbjct: 59 GNMLTLYADLMGICGVDRYKIAYREIKTALHEGAGCRNSYDSSFTGTMTQIE-EEETASL 117 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 EK+ +I LI ++ + + L +RG+ S+ IE F P Sbjct: 118 EKRSQIYQRLIEMLSL-------------SETHRRKLMDRGLTSNQIEAFHFRSTPVHGT 164 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-S 226 K I + N + R ++ P S G++ F R Sbjct: 165 EGLARRLIKEGYSLAGIPGFYMNQNQNWDIALYRNNQGILCPAYSVSGKIEGFQIRLDAP 224 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 + S KS + + + EG + + Sbjct: 225 HDDKKYLWLSST-------------NKKRGAGSKSPVSFIGNPFDKTVRVTEGILKPIVA 271 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 + + + G + + L L + + G Sbjct: 272 HALSGYSFLGTPGVNQYKSLEKALAVLKENGLEMVMEYFDMDKFMDIGCYGDYKSSTCGK 331 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 N + R + K + A + Sbjct: 332 CQNKERYYGRK-ICEEKRKKRDQIRAGCCRLYESCDRLKLKCIRKTWDQREDGIWAGNDK 390 Query: 407 HLKNCI 412 + + Sbjct: 391 GIDDYW 396 >gi|210616395|ref|ZP_03291080.1| hypothetical protein CLONEX_03301 [Clostridium nexile DSM 1787] gi|210149814|gb|EEA80823.1| hypothetical protein CLONEX_03301 [Clostridium nexile DSM 1787] Length = 205 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + F + L G E+ RLA GV K Sbjct: 6 RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFQE 74 >gi|169344608|ref|ZP_02865574.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] gi|169297218|gb|EDS79330.1| conserved hypothetical protein [Clostridium perfringens C str. JGS1495] Length = 936 Score = 60.7 bits (145), Expect = 7e-07, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I L IPI ++ + +D +R C EKT S N K ++Y F Sbjct: 586 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 637 Query: 67 CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F+S G S +S+ RLA + G+ Sbjct: 638 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 673 >gi|239947394|ref|ZP_04699147.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921670|gb|EER21694.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes scapularis] Length = 1382 Score = 60.7 bits (145), Expect = 8e-07, Method: Composition-based stats. Identities = 46/325 (14%), Positives = 91/325 (28%), Gaps = 25/325 (7%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G +Y FS GD + + C F+E+ + L + G+ Sbjct: 894 GRWYDFSKGEGGDLFTLVQREKNCDFVEAKKYLQDMVGMSTNGGKDLAA----------- 942 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 +A D + + K + R Sbjct: 943 --NLAADKNQQIKTQTEQYAEIAKIKRAIGLYEKSDSIKYVMPNNVAKRYLSEHRGIKEV 1000 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + L ++ ++ LI +R+ G + GG+ + + S E Sbjct: 1001 LTRYQLSNDLRTNMXWDSNSKQYYPALIAFVRNKDGNI--TGGQAIYLNKETGAKASIEV 1058 Query: 240 ILFHKGKNL--------YNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGV 291 G+ N + KD + S+ I+ EG LS+ +AG+ Sbjct: 1059 NKXSFGRIRGSFVEINKNNEQQNVQSRNVQSSKDGNNSVSNITIIAEGVETALSIGEAGI 1118 Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + + + RI++ D D + I + G V + Sbjct: 1119 KGKILCSLGVNNIRNYEPIKG--ERIIIAADNDGKDAVSVRTIIKAQDELISKGAAVAII 1176 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIV 376 D + ++ G + L+ Sbjct: 1177 RPLETGDFNDVLKSQGAESIRNLLE 1201 >gi|260593586|ref|ZP_05859044.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260534469|gb|EEX17086.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 324 Score = 60.3 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 4/90 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + A Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYPIVEYLERK-GIKPVRRTAAYTLYR--SPLREETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 ++ G + + GC+ E+++RL Sbjct: 59 YAEGRGGSIIDLCMRMEGCTLSEAIRRLGQ 88 >gi|329954623|ref|ZP_08295683.1| toprim domain protein [Bacteroides clarus YIT 12056] gi|328527164|gb|EGF54168.1| toprim domain protein [Bacteroides clarus YIT 12056] Length = 684 Score = 60.3 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 61/419 (14%), Positives = 110/419 (26%), Gaps = 61/419 (14%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSALLGCSFIESV 89 V ++ A CP +K + G Y+CF C G F ++V Sbjct: 28 RRNVGKNFVAECPKCGKKH--LSISRETGLYHCFYAGCDFHGRLKDFWEER-----RDTV 80 Query: 90 QRLAAIAGVPLPVVDPKIEKKEKIQ--------------TDLIRLIEVATDFFHHSLKNA 135 + + AG P K+ + + + D+ L Sbjct: 81 R---SDAGHPYSAGASPAAKRSFGKGEPGGMASASVGGGNAAFEVSMIPEDY--KRLSPE 135 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSR------YSLREHLRQKGFSEEKIIEAGLL 189 ++ DE + A + L + F + Sbjct: 136 IISKIKPLTDEPETSDPEQLAARRYLADMGISLKTAVDARIGCLMHRCFGGKDGKSGKGE 195 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY----LNSPETILFHKG 245 D + + + + + GQ + R+ S SP T Sbjct: 196 KDEKDEKNAVGMMYHCIAYVNY-INGQPVNVKYRSCDVSASGYTKCWSQESPTTPC---- 250 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV-----SSLGT 300 YN + + + +I+ EG DVL+L +AG V+ ++ Sbjct: 251 -PPYN-------IDCINPLRIAEENVPRLIVTEGERDVLTLHEAGYPYVISVPNGAASDL 302 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 + R +V+C D D PG D + VL +D Sbjct: 303 SKGFEAFRPWLDRVRELVICGDCDLPGRTLVKHLADYFGT-----RCLFTVLPGGCKDIS 357 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + YG ++I + P +E + + D Sbjct: 358 DVLVMYGAGVVREIIDSACPHHTSDIITVSERADEIMNVLSGNYDHGYDVGYGPLTDHV 416 >gi|237717738|ref|ZP_04548219.1| TraP [Bacteroides sp. 2_2_4] gi|229452967|gb|EEO58758.1| TraP [Bacteroides sp. 2_2_4] Length = 288 Score = 60.3 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IPI+ + + Y RR +YW P+ +E+T SF N K ++ Sbjct: 2 TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYLAPYREERTASFQLNVRKDIWHD 55 Query: 65 FSCHVKGDHLS 75 F GD + Sbjct: 56 FGTGQGGDIFT 66 >gi|226323472|ref|ZP_03798990.1| hypothetical protein COPCOM_01247 [Coprococcus comes ATCC 27758] gi|225208156|gb|EEG90510.1| hypothetical protein COPCOM_01247 [Coprococcus comes ATCC 27758] Length = 205 Score = 60.3 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + F + L G E+ RLA GV K Sbjct: 6 RFYCFGCGASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFKE 74 >gi|288561652|ref|YP_003429058.1| DNA primase [Bacillus pseudofirmus OF4] gi|288548284|gb|ADC52166.1| DNA primase [Bacillus pseudofirmus OF4] Length = 350 Score = 60.3 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 48/321 (14%), Positives = 89/321 (27%), Gaps = 51/321 (15%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDW----DRRKTNAVKGDYWACCPFHD-EKTPSFHCN 56 ++ I+++L + I + I + R + P H E+TP + Sbjct: 11 RISQETIQEVLD-VSILD-ISE--QLGHSPRRSGKQYAI---FCPSPNHGSERTPDTYIE 63 Query: 57 DSKGFYYCF----------SCHVKGDHLSFLSALLG------CSFIESVQRLAAIAGVPL 100 K + CF S +++ S F+ SV+ +AA+ G+ L Sbjct: 64 PYKNIFKCFGGGGCGCGGNSS------IAYYSWTENGEYDPKKHFLSSVKGVAALMGISL 117 Query: 101 PVVDPKIEKKEK---IQTDLIRLIE-------VATDFFHHSL-KNARDKRLHYYLDERGI 149 D EK +T + + E + L + RG Sbjct: 118 KYTDGSSEKATIAPVKRTKVYKPKETEPRDDGECDRLYRSFLSLCPIRAHHYEEWKSRGY 177 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR-----N 204 + I++F L P+ + G SA + Sbjct: 178 SNEEIKLFGLRSVPNKEELQDILQSLHQQGFDLKHIPGFSQRASKSAEGLVWEWSINATD 237 Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 P+R+ GQ R + + +S + +Y + Sbjct: 238 GYFIPVRNEIGQWYRMRIRRDAGKPKYIWFSSYDNSD-DTSCEVYLLRRYGASSGAPLNI 296 Query: 265 DVRRNSSSFIILVEGYMDVLS 285 V N + + D S Sbjct: 297 TVPTNVVQNWHVGDSIQDYFS 317 >gi|330995161|ref|ZP_08319077.1| hypothetical protein HMPREF9442_00132 [Paraprevotella xylaniphila YIT 11841] gi|329576572|gb|EGG58078.1| hypothetical protein HMPREF9442_00132 [Paraprevotella xylaniphila YIT 11841] Length = 69 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 8/70 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + +P+++ + + + R + W P+ E+T SF N +K +Y F Sbjct: 6 IDAVR-RMPLADFLARLGHEPVRRSGN-----ELWYLAPYRGERTSSFRVNVAKQLWYDF 59 Query: 66 SCHVKGDHLS 75 GD + Sbjct: 60 GLGKGGDIFT 69 >gi|253570909|ref|ZP_04848317.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839858|gb|EES67941.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 288 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IPI+ + + Y RR +YW P+ +E+T SF N K ++ Sbjct: 2 TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYLAPYREERTASFQLNVRKDIWHD 55 Query: 65 FSCHVKGDHLS 75 F GD + Sbjct: 56 FGTGQGGDIFT 66 >gi|320352350|ref|YP_004193689.1| P4 alpha zinc-binding domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320120852|gb|ADW16398.1| P4 alpha zinc-binding domain protein [Desulfobulbus propionicus DSM 2032] Length = 480 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 71/495 (14%), Positives = 133/495 (26%), Gaps = 73/495 (14%) Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS--FHCNDSKGFYYCFSCHVKGDHLSFLS 78 I + + CP S F G + CF+C KGD + +L Sbjct: 8 IAAKHGLRKSGN-----RHTGPCPKCGGSKDSDKFVLFTDGG-FRCFACGFKGDRIKWLR 61 Query: 79 ALLGCSFIESVQRLAA--------------IAGVPLPVVDPKIEKKEKIQ----TDLIRL 120 + G S E+ A G P+ + + + +L Sbjct: 62 EMDGMSCREAHD--AEGKDCSPSCPNYGPCRNGEPVKRRPRSVRPQVGGRPDGLAELTAA 119 Query: 121 I------EVATDFFHHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 A + + R+ +L+ RGI + ++ ++LG+ R L Sbjct: 120 HPGSAWSAWAGKLVEKARQALTREPEEIRWLESRGIGTAQVDQYQLGWLAHDLRVDRREL 179 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY 233 ++ + L+ PI G++ R Sbjct: 180 GLPLEEGKERLWVP----------------GGLVIPIFDGHGELHRLRIRRTPAAREKFL 223 Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 + + + S ++VE +D +++ A + Sbjct: 224 SDRK--------------YVWIKGSGNLPMVLRPSGSIRGAVIVEAELDAMAVAAAHGEV 269 Query: 294 VVSSLGTALT--EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 +V +LGT + LR + P I++ D D V + F Sbjct: 270 LVVALGTVAGGIDAGLRAELEECPVILVALDADPARDGKLGAGPAAVKRWRRSFRQARFW 329 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + G+DP F+R +G + + LP V E Sbjct: 330 PMPAGKDPGDFVRDHGGD-LRQWVESGLPPVVAC-----PPPICQDRSLSPEQRSPGNGG 383 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + L +A + L+ + +G + R D R Q + Sbjct: 384 GDFFPSSALPLDDIEAFAELLRTESGAVWYGRAPHGELVVRFRRDADTLDAFMRRGQITR 443 Query: 472 VKGKLSKKPSLREAA 486 + E Sbjct: 444 IMYGGGAVADFLERL 458 >gi|307566194|ref|ZP_07628646.1| conserved domain protein [Prevotella amnii CRIS 21A-A] gi|307345104|gb|EFN90489.1| conserved domain protein [Prevotella amnii CRIS 21A-A] Length = 170 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 18/117 (15%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD-----YWACCPFHDEKTPSFHCNDSK 59 + + + I +R+ N V+ Y P +E PSF + K Sbjct: 3 EEDLSRIK-RYSIVEY------LERKGINPVRRTPAYALYR--SPLREETHPSFKVDTEK 53 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 + ++ G + L C+ E+V L A P ++EK+Q Sbjct: 54 NLWIDYAEGRGGSIIDLCMRLESCTLSEAVHILGRNA----PDDTAHSPQREKVQDT 106 >gi|60677309|ref|YP_209667.1| hypothetical protein PBCN09 [Clostridium perfringens] gi|60417944|dbj|BAD90611.1| conserved hyothetical protein [Clostridium perfringens] Length = 932 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 10/96 (10%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I L IPI ++ + +D +R C EKT S N K ++Y F Sbjct: 582 INKLKE-IPIGDIADKLGIDTVKRGNKLW-------CNLRGEKTASCCINIDKNYFYDFG 633 Query: 67 CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 GD + F+S G S +S+ RLA + G+ Sbjct: 634 GQPEGGDGIKFVSKAEGISAKDSIYRLADMFGIEPE 669 >gi|255034709|ref|YP_003085330.1| DNA primase [Dyadobacter fermentans DSM 18053] gi|254947465|gb|ACT92165.1| DNA primase [Dyadobacter fermentans DSM 18053] Length = 298 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%) Query: 7 FIKDLLIHIPISNLIGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 + + I + Y+ + + N D+W PF +E+T SF N +Y Sbjct: 13 TLAKIKE-FDIVD----YLFELGFKPVNIRNVDHWYLSPFRNERTASFKVNRQLNRWYDH 67 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQR 91 + G+ + F CS E V+ Sbjct: 68 GIGLGGNLVDFAVTFYQCSVREVVRI 93 >gi|312878072|ref|ZP_07738008.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795151|gb|EFR11544.1| zinc finger CHC2-family protein [Caldicellulosiruptor lactoaceticus 6A] Length = 120 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYC-FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 A CPFHD++ SF S G + C C G+ ++FL+ + G S E+ ++L A Sbjct: 36 AQCPFHDDQHNSFWFRISNGCWKCEAGCG-GGNIITFLAKIEGLSTREAYKKLLKEA 91 >gi|253565329|ref|ZP_04842784.1| DNA primase [Bacteroides sp. 3_2_5] gi|251945608|gb|EES86015.1| DNA primase [Bacteroides sp. 3_2_5] Length = 322 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL--- 80 Y ++ W PF +E+ PSF N + +Y FS G+ ++ L Sbjct: 20 YDPVRKQG-----DSLWYKSPFRNEREPSFKVNTERNLWYDFSAGRGGNIIALAQELYAS 74 Query: 81 LGCSFIESVQRLAAIA 96 ++ ++R+A A Sbjct: 75 DSLPYL--LERIAEQA 88 >gi|237724600|ref|ZP_04555081.1| DNA primase [Bacteroides sp. D4] gi|229437159|gb|EEO47236.1| DNA primase [Bacteroides dorei 5_1_36/D4] Length = 325 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 17 ISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I+++ I Y+ G+ W PF E PSF N +Y F G Sbjct: 3 ITDVKQIRISDYLHSLGYNPVKQQGGNLWYKSPFRQESEPSFKVNTELNLWYDFGAGKGG 62 Query: 72 DHLSFLSA 79 + ++ Sbjct: 63 NIIALAQE 70 >gi|300726808|ref|ZP_07060238.1| putative mobilizable transposon, excision protein [Prevotella bryantii B14] gi|299775921|gb|EFI72501.1| putative mobilizable transposon, excision protein [Prevotella bryantii B14] Length = 334 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P E PSF + K + Sbjct: 3 EEDLSAIK-RYSIVEYLERK-GIKPVRRTPAYALYR--SPLRAETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ +E+++RL A Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLLEAIRRLGQNA 90 >gi|301312374|ref|ZP_07218290.1| DNA primase [Bacteroides sp. 20_3] gi|300829557|gb|EFK60211.1| DNA primase [Bacteroides sp. 20_3] Length = 291 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 76/250 (30%), Gaps = 21/250 (8%) Query: 16 PISNL----IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 I+++ I Y+ W P +E SF N + +Y F Sbjct: 2 NIADVKQISIADYLHSLGYSPVKRQGNGLWYKSPLREEHEASFKVNTDRNLWYDFGAGKG 61 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHH 130 G+ ++ L F +S+ L P V P + +T+ F H Sbjct: 62 GNIIALAKELY---FSDSLPYLLKRIEEQTPNVHPVSFSFPQHRTEP--------SFQHL 110 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 +++ L YL RGI+ + + + S + + Sbjct: 111 EVRDLTHPALLRYLQGRGINIELAKRECKELHFTNNGRPFFASKYSINS----LVYWVTY 166 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFH-KGKNLY 249 + + Y I + G ++ T + + +P + + + Y Sbjct: 167 VHNVVYSFYRSMIYCYINSTQRCAGSIVIDIIPTNGADKRKFFPFAPYFPVTNVIKRYFY 226 Query: 250 NFFGALNYLQ 259 +F A+ ++ Sbjct: 227 PYFPAIIGIK 236 >gi|260495413|ref|ZP_05815539.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] gi|260196950|gb|EEW94471.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33] Length = 354 Score = 59.5 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 101/357 (28%), Gaps = 47/357 (13%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G+Y++ H+++ PS CF+C K D + Sbjct: 26 GEYLELK---GIDTSKLMRCFSKEHEDRNPSMSYFAPGKICKCFACGEKYDIFKLV---- 78 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141 G+ +++ K +L E+ D + ++ Sbjct: 79 -----------GEEYGIE------DFKERAKKVDELYNHRELIED--ANKTIYSKKNTFI 119 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YD 200 G + E L Y + + + + + G+ YD Sbjct: 120 ELSKNEGYVENNKERKNLIYLIPRYEAYIKKCIDNLKDCDYLTKRGISKKVQEKYHIGYD 179 Query: 201 RFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQK 260 + + + F R + K K +T +F N + Sbjct: 180 PNFKKGEWKAIIIPTFLCCFTARNIDKNAKDKIRKVGDTQIF-------NLWELRE---- 228 Query: 261 SIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 + N + +VEG +D LS+ + G +++ + + + + Sbjct: 229 ------KENINKDFYIVEGEIDALSIIETGRKSLALGSIQNIQLLIKKFEEDIPKNKIYL 282 Query: 321 F-DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 D D G +A + L+ + N + +DP+ ++ K + L Sbjct: 283 MLDNDKRGQKAQKELYKLLKEIGVNCISTNILWKY--KDPNEYLVKDRKGFMDSLKN 337 >gi|312794219|ref|YP_004027142.1| hypothetical protein Calkr_2060 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181359|gb|ADQ41529.1| hypothetical protein Calkr_2060 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 361 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 54/379 (14%), Positives = 110/379 (29%), Gaps = 64/379 (16%) Query: 1 MNYPRDFIK----DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSF 53 M R+ I D+L + + +R CP+ DE + Sbjct: 1 MR--RELIDITMEDVLDRVRL-------TVLKQRGNELN-----CLCPYCDEPHRREGHL 46 Query: 54 HCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI--------AGVP--LPVV 103 + N K + C C +G+ L + L G E+ + LA + L Sbjct: 47 YINVVKDTFICHKCGRQGNALQLYALLTGQDTKEAYKELAQEISSGLRRLHHIQYKLQYT 106 Query: 104 DPK-----IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + E++ K+ + ++L+E++ + L+ RG+ AI + Sbjct: 107 SQQKNIATPEERNKVYREFLKLLELSEEHKQDLLR-------------RGLSEIAIRVKG 153 Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 + E R + ++ P+R+ GQ++ Sbjct: 154 YKTLFVGKEKRLEICRTLQEKGLSLEGIPGFFKHKSTWEWDFIPYRGYAIPVRNLNGQIV 213 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 R S S N R + + E Sbjct: 214 GLQVRMDEPAFSKYRWFSSANSGDVGTPAEANLH------------VTSRPDDGVVYVTE 261 Query: 279 GYMDV-LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAID 336 G + ++ G + + + + +L ++ P+ IVL FD D + ++ Sbjct: 262 GVLKADIASYLLGKTFIGLPGVGSCHKQLVEVLKQIQPKLIVLAFDMDYREKKEVAFNLE 321 Query: 337 -LVLCHLIPGNRVNFVLLS 354 + G + + Sbjct: 322 KIKKMLAENGFKFKQITWD 340 >gi|297627280|ref|YP_003689043.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923045|emb|CBL57628.1| DNA primase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 287 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 99/295 (33%), Gaps = 37/295 (12%) Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS----KGESVKYLNSPETILFHKG 245 + ++ DRFR+RL PI G ++ F R KYLN+P T ++ KG Sbjct: 7 VKPASTGRLIDRFRDRLTLPITDQDGHILGFVARANPTIPADQAGPKYLNTPTTPIYSKG 66 Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS--LCQAGVQNVVSSLGTALT 303 Y A +S ++VEG +D ++ L AG ++ LGT+LT Sbjct: 67 DQFYGHPTA----------------TSTPVIVEGPLDAIAITLATAGRYTGLAPLGTSLT 110 Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 + Q L R+VL D D G AA K + H L +G DP + Sbjct: 111 DQQAA-LLADQERVVLATDNDTAGNTAANKDHFKLAVHRTDTL---RAELPQGSDPAELL 166 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 +G A + + + P +D + ++ + + Sbjct: 167 ITHGPAALTQSLHNATPTIDRIVSYANDDAAVDLALSAIAAAH-----------PSAWQS 215 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + + ++ + ++ W + R Q+ Sbjct: 216 GLEELSEQTKLPQEQLQARLVPLVEAWNDDPREAAAGAAPQQRGPFQRAATSARP 270 >gi|295086845|emb|CBK68368.1| DNA primase (bacterial type) [Bacteroides xylanisolvens XB1A] Length = 303 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 25/107 (23%) Query: 1 MNYPRDF-IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 M I + I +++ + + + R + W P+ +E+TPSF N Sbjct: 1 MRRMERTDIDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYHAPYRNERTPSFRVNV 54 Query: 58 SKGFYYCFSCHVKGDHLS----------------FLSALLGCSFIES 88 +K +Y F GD + F++ + F+ + Sbjct: 55 AKRLWYDFGLGKGGDIFTLAGEFARSGDFMAQAGFIAETVRMPFVSA 101 >gi|289548579|ref|YP_003473567.1| replicative DNA helicase [Thermocrinis albus DSM 14484] gi|289182196|gb|ADC89440.1| replicative DNA helicase [Thermocrinis albus DSM 14484] Length = 464 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 17/177 (9%) Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEE 536 E A+L +I P + + L + + + + L+S L + E K + Sbjct: 8 PHDDTAERAILGAMIKDPESIPLVLESLREEDFYVEDHRLLFSVLSKIWEEKGKDWDDIV 67 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + L + G LL++L + A A + + + ++ L + L + Sbjct: 68 LREYLRKAG---LLERLSMDLVYQLAEEAAEGALLEEAVRIVKEKSGLRQLLELSLNTIK 124 Query: 597 EIEK-----QIAQVTAKGEAEKTAIL----ISILHEVHIQ----IHQIESQEAMIEG 640 EI++ +I + + E + + +V + I++ + ++ +I G Sbjct: 125 EIKEEPDFARIVEAITQRVYEISEKHTTTQYFHIKDVVREVLEIINRRKREDRIITG 181 >gi|307329986|ref|ZP_07609138.1| replicative DNA helicase [Streptomyces violaceusniger Tu 4113] gi|306884362|gb|EFN15396.1| replicative DNA helicase [Streptomyces violaceusniger Tu 4113] Length = 493 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + + + + P Sbjct: 56 RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGNDFYRPAHETVYQAILDLYAKGEPADP 115 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +RG ++ R + L + + Y + + R + R+ Sbjct: 116 ITVAAELTKRG------EIARVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 165 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 166 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 225 Query: 639 EGFGKMSG 646 G+MSG Sbjct: 226 SRSGQMSG 233 >gi|325269927|ref|ZP_08136537.1| DNA primase [Prevotella multiformis DSM 16608] gi|324987900|gb|EGC19873.1| DNA primase [Prevotella multiformis DSM 16608] Length = 289 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 43/137 (31%), Gaps = 52/137 (37%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I + I +++ + + + R + W P+ E+TPSF N +K +Y F Sbjct: 6 IDTMRQ-ISLADFLARLGHEPVRRSGN-----ELWYRAPYRSERTPSFRVNVAKRLWYDF 59 Query: 66 SCHVKGDHLS----------------FLSALLGCSF-------------------IESV- 89 GD + F++ F +E+V Sbjct: 60 GLGKGGDIFTLAGEFARSGDFMAQARFIAETARMPFVASEKPLYLPEPSEPAFEGVEAVP 119 Query: 90 -------QRLAAIAGVP 99 + LA G+P Sbjct: 120 LLRSPLTEYLAER-GIP 135 >gi|239947454|ref|ZP_04699207.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921730|gb|EER21754.1| conjugal transfer protein TraA [Rickettsia endosymbiont of Ixodes scapularis] Length = 687 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 95/326 (29%), Gaps = 17/326 (5%) Query: 53 FHCNDSK-GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 N SK G +Y FS GD + + C F+E+ + L + + V + Sbjct: 196 MKINGSKVGIWYDFSKEEGGDLFTLVQREKNCDFVEAKKYLQDMVSISTKVDEALAVNLS 255 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 + I+ + + I + K + Sbjct: 256 TNKKRQIK-------------TQTEQESEMAKIKRAEILYEKSDSIKYSMPNNVATRYLS 302 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 R + L ++ ++ LI R+ G + L+K + Sbjct: 303 EHRGIEKILTGYQLSNDLRTNMMWDSNSKQYYPALIAFARNKDGNITGGQSIYLNKDTNN 362 Query: 232 KYLNSPETILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAG 290 K F + + + KD + S+ I+ EG LS+ +AG Sbjct: 363 KANIEVNKRSFGRIRGSFVEINKNNEQQNVQSSKDGNNSVSNITIIAEGVETALSIAEAG 422 Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 ++ + + RI++ D D + I + G V Sbjct: 423 IKGKILCSLGVSNIRNYEPIKG--ERIIIAADNDGKDAVSVNTVIKAQEELIRQGATVAI 480 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIV 376 + D + ++ G + +KLI Sbjct: 481 IRPPEKGDFNDMLKSQGVESIDKLIE 506 >gi|331088922|ref|ZP_08337831.1| hypothetical protein HMPREF1025_01414 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406520|gb|EGG86028.1| hypothetical protein HMPREF1025_01414 [Lachnospiraceae bacterium 3_1_46FAA] Length = 341 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 62/352 (17%), Positives = 122/352 (34%), Gaps = 73/352 (20%) Query: 33 NAVKGDYWACCPFHD---EKTPSFHC----------NDSKGFYYCFSCHVKGDHLSFLSA 79 N D CPFH E PS + G +C++C D F++ Sbjct: 34 NNTGSDLMVTCPFHKGGKENKPSCGVLLKEKKVNGKSYEAGTVHCYTCGYTADLPQFVAD 93 Query: 80 LLGCSFIES-VQRLAAIAGVPLPVVDPKI---EKKEKIQTDLIRLIEVATDFFHHSLKNA 135 +LG + + L +P + + + + E + +H +L + Sbjct: 94 VLGLGNSLAGYKWLVGKYNYSTAEREPLELNLYRGQAQKASYMD--EDLVERYHRALLES 151 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 + YL +R + + +E +K+G+ P+ Sbjct: 152 --EVACEYLHKRKLANWVLEAYKVGFDPEDAT---------------------------- 181 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 ++FP+R G+V+ + GR++ ++ N+ + K ++ Sbjct: 182 ----------VLFPVRGLDGKVVFYKGRSIIGK---RFYNAKD---IDKSSVVFGL---- 221 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLS 314 L + + I + E +D LSL G + V+ +G+ ++E Q R L Sbjct: 222 WELCNGRFSNGVATAEDLIWITESEIDALSLISYG-EYAVAIMGSHISEEQCRDLERSPF 280 Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCY 366 R V+ D D+ G + A + L+ N + +D + I+ Y Sbjct: 281 RRYVIATDNDEAGRKGASQIKRLL--IPKGFRFTNLRWDTELKDINDLIKQY 330 >gi|307566283|ref|ZP_07628726.1| mobilizable transposon, excision family protein [Prevotella amnii CRIS 21A-A] gi|307345009|gb|EFN90403.1| mobilizable transposon, excision family protein [Prevotella amnii CRIS 21A-A] Length = 328 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y P ++ PSF + K + Sbjct: 3 EEDLSRIK-RYPIVEYLERK-GIKPVRRIPAYALYH--SPLREDTHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ E+++ L A Sbjct: 59 YAEGRGGSIIDLCMRLDGCTLSEAIRILGRNA 90 >gi|298243702|ref|ZP_06967509.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] gi|297556756|gb|EFH90620.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] Length = 415 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 18/91 (19%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN-DSK 59 I+ + ++IG+YV DR CCPF H + PS + SK Sbjct: 322 TIQQWCAQQDVMDVIGRYVALDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSK 373 Query: 60 ---GFYYCFSCHVKGDHLSFLSALLGCSFIE 87 +YC + G FL G E Sbjct: 374 PGGACWYCHTWKQGGSVFDFLRLYYGVEARE 404 >gi|325958884|ref|YP_004290350.1| hypothetical protein Metbo_1134 [Methanobacterium sp. AL-21] gi|325330316|gb|ADZ09378.1| hypothetical protein Metbo_1134 [Methanobacterium sp. AL-21] Length = 360 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%) Query: 43 CPFHD--EKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 CPFHD +K PSF N KG YYC+ C KG++ FL Sbjct: 321 CPFHDHEDKKPSFRVN-KKG-YYCYGCGRKGNYWDFLKK 357 >gi|329964839|ref|ZP_08301847.1| hypothetical protein HMPREF9446_03464 [Bacteroides fluxus YIT 12057] gi|328524480|gb|EGF51548.1| hypothetical protein HMPREF9446_03464 [Bacteroides fluxus YIT 12057] Length = 322 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LGCSFIESVQ 90 W PF DE+ PSF N + +Y F G+ ++ L ++ ++ Sbjct: 25 RQGNSLWYKSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALARELYASDSLPYL--LE 82 Query: 91 RLAAIA 96 R+A A Sbjct: 83 RIAEQA 88 >gi|212692855|ref|ZP_03300983.1| hypothetical protein BACDOR_02355 [Bacteroides dorei DSM 17855] gi|212664644|gb|EEB25216.1| hypothetical protein BACDOR_02355 [Bacteroides dorei DSM 17855] Length = 321 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y R+ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|254885010|ref|ZP_05257720.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|254837803|gb|EET18112.1| DNA primase [Bacteroides sp. 4_3_47FAA] Length = 321 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI + + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIVDYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|239948043|ref|ZP_04699796.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239922319|gb|EER22343.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 1377 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 46/318 (14%), Positives = 93/318 (29%), Gaps = 15/318 (4%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 G +Y FS GD + + C F+E+ + L + G+ D K ++ Sbjct: 894 GIWYDFSKDEGGDLFTLVQREKNCDFVEAKKYLQNMVGMSTNSKDLVTNLKLNKNKQ-VK 952 Query: 120 LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 + + + + K + R Sbjct: 953 TNDQKEQY-----------DEIAKIKRAIGLYEKSDSVKYVMPNNVAKRYLSEHRGIKEV 1001 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + + L ++ ++ LI R++ G + L+K + K Sbjct: 1002 LTRYQLSNDLRTDMMWDSNSKQYYPALIAFARNTDGNITGGQSIYLNKDTNNKADIEVNK 1061 Query: 240 ILFHKGKNLYN-FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 F K K + KD ++S+ I+ EG LS+ +AG++ + Sbjct: 1062 RSFGKIKGSFVEISKNNEQQNVQSSKDGNNSASNVTIIAEGLETALSIREAGIKGKILCS 1121 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 + RI++ D D + I + G V + D Sbjct: 1122 LGVSNIRNYEPIKG--ERIIIAADNDGKEAVSVNTVIKAQEELISKGAAVAIIRPLETGD 1179 Query: 359 PDSFIRCYGKTAFEKLIV 376 + ++ G + L+ Sbjct: 1180 FNDVLKSQGAESIRNLLE 1197 >gi|153801497|ref|ZP_01956083.1| DNA primase [Vibrio cholerae MZO-3] gi|124122988|gb|EAY41731.1| DNA primase [Vibrio cholerae MZO-3] Length = 231 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 85/264 (32%), Gaps = 42/264 (15%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFN--TPDERAELEIHLKNCINHIKDQKL 420 +R YGK FE+ + + PL L++ E N + + ++ L I+ I D L Sbjct: 1 MRKYGKADFEQQVANATPLSQYLFENLIELHQINLGSHEGKSALRAVATPLIDKIPDPFL 60 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + + +R Q KK + ++ P + + ++ + Sbjct: 61 QEVLEKLLDERTGFDHQLRR----------KKARKTENRPAPHKAIKRTPM--------- 101 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 ++ LI +P+ + + L +S + + + ++ + Sbjct: 102 ----RDVIALLIQNPSYAELVPDLASVRHLMIPGLDT-FSEVLEKCRQYPHITTGQLLEH 156 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + LL +L + E + + + Q + +Q E ++ Sbjct: 157 WRDSKNETLLSRLASWEIP-LVEDNQEELFLDSLDKILAQCV---------EKQIENLQA 206 Query: 601 QIAQVTAKGEAEKTAILISILHEV 624 + + + L ++ Sbjct: 207 K------ERSVGLSTEEKRELQDL 224 >gi|110666929|ref|YP_659583.1| putative deoxyribonuclease [Clostridium difficile 630] gi|109689089|emb|CAJ66420.1| putative enzyme, helicase family [Clostridium difficile 630] Length = 869 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 76/272 (27%), Gaps = 26/272 (9%) Query: 1 MNYP-RDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC 55 M + I + I L IG VD ++ CP H K +F Sbjct: 1 MKIDIKQLIDIIKN-ANIDELYLRDIG--VDTTQKGNVP--------CPIHGGKDKNFQF 49 Query: 56 NDSKGFYYCFS--CHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEK 112 + +K Y C+S C V D + E++ LA VPLP K K+ Sbjct: 50 DLNKRIYTCYSHNCVVGADIIELCRTYEHFEKPIEAILFLANKYNVPLPFTKNKTNTKKI 109 Query: 113 IQ--TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLR 170 ++ + F + A E + + S+ Sbjct: 110 NNAPKNIYIKKKDINSFIEEKKQEAFKNNDIELAFEFECMTDKDKRKYYLDNNIKIKSML 169 Query: 171 EHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR----NRLIFPIRSSRGQVIAFGGRTLS 226 E + + II+ I + ++ + G+ + Sbjct: 170 EKQNYSSYRADSIIDVDKYISENLKGIRQAIECTTEGENVLMVAPTGSGKTYSIINTLKE 229 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYL 258 ++ + + YN GA + + Sbjct: 230 LDIKALFIFPNSANV-QQAIVEYNIAGAYDKI 260 >gi|281417135|ref|ZP_06248155.1| hypothetical protein Cther_1800 [Clostridium thermocellum JW20] gi|281408537|gb|EFB38795.1| hypothetical protein Cther_1800 [Clostridium thermocellum JW20] Length = 649 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 43 CPFHDEKTPSFHCN---DSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 C H++ PS H D Y CF C KG + + A+ C+ ++++ + + + Sbjct: 319 CVLHNDSNPSAHIITLKDGTQVYKCFGCGFKGTITTLVEAIARCTKKQAIKFIQKVYNIE 378 Query: 100 LPVVDPKIEKKEKIQTDL 117 + + +++ KE +Q ++ Sbjct: 379 IVESEKQVQAKELLQENI 396 >gi|297158759|gb|ADI08471.1| replicative DNA helicase [Streptomyces bingchenggensis BCW-1] Length = 491 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 24/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + + + + P Sbjct: 54 RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGNDFYRPAHETVYQAILDLYAKGEPADP 113 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +RG ++ R + L + + Y + + R + R+ Sbjct: 114 ITVAAELTKRG------EIARVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 163 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 164 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 223 Query: 639 EGFGKMSG 646 G+MSG Sbjct: 224 SRSGQMSG 231 >gi|254884120|ref|ZP_05256830.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|255013635|ref|ZP_05285761.1| DNA primase [Bacteroides sp. 2_1_7] gi|254836913|gb|EET17222.1| DNA primase [Bacteroides sp. 4_3_47FAA] Length = 295 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCETKSVS--EALAYI-ERHVNGVSLPKTRTLPTTFRPVEADMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALFSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLILQSRGETQSRVCLFEGFMDFLSY 207 >gi|228472174|ref|ZP_04056940.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC 33624] gi|228276377|gb|EEK15101.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC 33624] Length = 945 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 48/336 (14%), Positives = 110/336 (32%), Gaps = 28/336 (8%) Query: 47 DEKTPSFHCND---SKG----FYYCFS-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 ++KT S H N KG + F + + + ++ C+F E++++L + GV Sbjct: 46 EDKTGSCHINQKTSDKGPAPYTFTDFGVENKGMNAIDYVVKRDHCTFWEALKKLCSQYGV 105 Query: 99 PLPVVDPKIEKKE-----KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 PLP + E + ++ ++ + + L L + + Sbjct: 106 PLPEGNKVTPTVEFSSNVEEDEGFWKVN-FSSSYKNKKLLQRLFPFYTEELLKEYVFKEI 164 Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213 +G + + F + + A D F ++ F S Sbjct: 165 ESYQTVGVNEKGNKYKKTTIANADFPIFGYDKGDYVKIYQPYAPKGDAFIHKHSFVGDKS 224 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY-LQKSIRKDVRRNSSS 272 ++I R + + + + A N +K + + Sbjct: 225 GKRIIYGWDRLFE-----------KVEYETIKQVIKDLKTARNSETKKDLLAQLDALKLE 273 Query: 273 FIILVEGYMDVLSLCQAGVQNVVSSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAA 331 +I+ G D +++ G + + T + + L +++ I D D+ G++ A Sbjct: 274 TVIIATGGTDGINIASLGYDVIWFNSETEVINSQEYYELSQIAKNIYYIPDLDETGVKQA 333 Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 + D L + + S+ +D ++R Sbjct: 334 VQIADSFLDIKLVWL-PKDLKYSKKKDFADWLRREK 368 >gi|282159350|gb|ADA78741.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis NE061598] Length = 462 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 6 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 66 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 119 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165 >gi|254874947|ref|ZP_05247657.1| replicative DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|254840946|gb|EET19382.1| replicative DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] Length = 464 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 8 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 68 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 121 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167 >gi|56708144|ref|YP_170040.1| replicative DNA helicase [Francisella tularensis subsp. tularensis SCHU S4] gi|110670615|ref|YP_667172.1| replicative DNA helicase [Francisella tularensis subsp. tularensis FSC198] gi|224457240|ref|ZP_03665713.1| replicative DNA helicase [Francisella tularensis subsp. tularensis MA00-2987] gi|56604636|emb|CAG45692.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis SCHU S4] gi|110320948|emb|CAL09075.1| Replicative DNA helicase [Francisella tularensis subsp. tularensis FSC198] Length = 465 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 9 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 69 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKNKAKLRSLQ 122 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168 >gi|195536236|ref|ZP_03079243.1| replicative DNA helicase [Francisella tularensis subsp. novicida FTE] gi|194372713|gb|EDX27424.1| replicative DNA helicase [Francisella tularensis subsp. novicida FTE] Length = 462 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 6 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 66 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165 >gi|332678239|gb|AEE87368.1| Replicative DNA helicase [Francisella cf. novicida Fx1] Length = 462 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 6 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 66 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165 >gi|208779339|ref|ZP_03246685.1| replicative DNA helicase [Francisella novicida FTG] gi|254369340|ref|ZP_04985352.1| hypothetical protein FTAG_00310 [Francisella tularensis subsp. holarctica FSC022] gi|254372901|ref|ZP_04988390.1| replicative DNA helicase [Francisella tularensis subsp. novicida GA99-3549] gi|254374355|ref|ZP_04989837.1| hypothetical protein FTDG_00522 [Francisella novicida GA99-3548] gi|151570628|gb|EDN36282.1| replicative DNA helicase [Francisella novicida GA99-3549] gi|151572075|gb|EDN37729.1| hypothetical protein FTDG_00522 [Francisella novicida GA99-3548] gi|157122290|gb|EDO66430.1| hypothetical protein FTAG_00310 [Francisella tularensis subsp. holarctica FSC022] gi|208745139|gb|EDZ91437.1| replicative DNA helicase [Francisella novicida FTG] Length = 464 Score = 59.1 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 8 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 68 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167 >gi|189502320|ref|YP_001958037.1| hypothetical protein Aasi_0948 [Candidatus Amoebophilus asiaticus 5a2] gi|189497761|gb|ACE06308.1| hypothetical protein Aasi_0948 [Candidatus Amoebophilus asiaticus 5a2] Length = 509 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 66/204 (32%), Gaps = 16/204 (7%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 RH D RL+ S+ K+ + E ++L L+ L E L + Sbjct: 8 PRHLDSAATPSRLLPSTEPHAKMPPQAIELEQSILGALMLEKDALTEVIDILKPNSFYEE 67 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATT 567 Q+++ + F + +L + G E L L +V A Sbjct: 68 SHQEIYKAIIELFNNSAPVDLRTVVNQLRKNGKLEFVGGSYYLASLTARVSSAANIEYHA 127 Query: 568 EANIVDV--RQGYQQALALYKRFR-------LLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 A I RQ Q A +++K +L E+ ++ + + L+ Sbjct: 128 RAVIEYAIKRQLIQVATSIHKHAYEDTTDVFMLLDHAEQALFEVTESNIRKNYTDMRSLL 187 Query: 619 -SILHEVHIQIHQIESQEAMIEGF 641 + E+ + + + GF Sbjct: 188 GDAIKELEAKRGHKDGLTGIASGF 211 >gi|118497540|ref|YP_898590.1| replicative DNA helicase [Francisella tularensis subsp. novicida U112] gi|118423446|gb|ABK89836.1| replicative DNA helicase [Francisella novicida U112] Length = 465 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 9 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 69 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168 >gi|134301957|ref|YP_001121926.1| replicative DNA helicase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049734|gb|ABO46805.1| replicative DNA helicase [Francisella tularensis subsp. tularensis WY96-3418] Length = 464 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 8 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 68 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167 >gi|187931626|ref|YP_001891610.1| replicative DNA helicase [Francisella tularensis subsp. mediasiatica FSC147] gi|187712535|gb|ACD30832.1| replicative DNA helicase [Francisella tularensis subsp. mediasiatica FSC147] Length = 465 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 9 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 69 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168 >gi|167010711|ref|ZP_02275642.1| replicative DNA helicase [Francisella tularensis subsp. holarctica FSC200] Length = 462 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 6 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 65 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 66 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 119 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 120 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 165 >gi|89256366|ref|YP_513728.1| replicative DNA helicase [Francisella tularensis subsp. holarctica LVS] gi|89144197|emb|CAJ79466.1| Replicative DNA helicase [Francisella tularensis subsp. holarctica LVS] Length = 464 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 8 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 67 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 68 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 121 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 122 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167 >gi|114765605|ref|ZP_01444706.1| hypothetical protein 1100011001288_R2601_22911 [Pelagibaca bermudensis HTCC2601] gi|114542054|gb|EAU45087.1| hypothetical protein R2601_22911 [Roseovarius sp. HTCC2601] Length = 372 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 9/102 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M D + + IPI + + + R + CP T F N K Sbjct: 1 MR-SDDRLHEA-QAIPIDEVATRLGLTLRR----ISAVEKCGPCPACGG-TDRFSINTQK 53 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y C SC GD + ++ LGC F +++ L A V + Sbjct: 54 QVYNCRSCG-GGDGIKLVTVALGCDFPQALDFLVGAADVEID 94 >gi|302543996|ref|ZP_07296338.1| replicative DNA helicase [Streptomyces hygroscopicus ATCC 53653] gi|302461614|gb|EFL24707.1| replicative DNA helicase [Streptomyces himastatinicus ATCC 53653] Length = 495 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + + + + P Sbjct: 58 RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLQGNDFYRPAHETVYQAILDLYAKGEPADP 117 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +RG ++ + + L + + Y + + R + R+ Sbjct: 118 ITVAAELTKRG------EIAKVGGASYLHTLVQSVPTAANAEYYAEIVH----ERAVLRR 167 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 168 LVEAGTRITQMGYAADGDVDEIVNNAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 227 Query: 639 EGFGKMSG 646 G+MSG Sbjct: 228 SRSGQMSG 235 >gi|115314811|ref|YP_763534.1| replicative DNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|169656609|ref|YP_001428516.2| replicative DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] gi|254367702|ref|ZP_04983723.1| replicative DNA helicase [Francisella tularensis subsp. holarctica 257] gi|290954059|ref|ZP_06558680.1| replicative DNA helicase [Francisella tularensis subsp. holarctica URFT1] gi|295312552|ref|ZP_06803312.1| replicative DNA helicase [Francisella tularensis subsp. holarctica URFT1] gi|115129710|gb|ABI82897.1| replicative DNA helicase [Francisella tularensis subsp. holarctica OSU18] gi|134253513|gb|EBA52607.1| replicative DNA helicase [Francisella tularensis subsp. holarctica 257] gi|164551677|gb|ABU61560.2| replicative DNA helicase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 465 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 20/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 9 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYKQIVTLNQANTPF 68 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L++ +A + + + Y + + R L Sbjct: 69 DVLILSEYLATEGL------LEQAGGEAYIIDLAANTPSISNIKTYANIVKDKAKLRSLQ 122 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 123 NSVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 168 >gi|256840378|ref|ZP_05545886.1| DNA primase [Parabacteroides sp. D13] gi|256737650|gb|EEU50976.1| DNA primase [Parabacteroides sp. D13] Length = 295 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPRPRALPATSRPVEADMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQKRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207 >gi|224026997|ref|ZP_03645363.1| hypothetical protein BACCOPRO_03756 [Bacteroides coprophilus DSM 18228] gi|224020233|gb|EEF78231.1| hypothetical protein BACCOPRO_03756 [Bacteroides coprophilus DSM 18228] Length = 295 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPRTRALPATSRPVEADMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207 >gi|160881113|ref|YP_001560081.1| zinc finger CHC2-family protein [Clostridium phytofermentans ISDg] gi|160429779|gb|ABX43342.1| zinc finger CHC2-family protein [Clostridium phytofermentans ISDg] Length = 166 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 25 VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS 84 V RR CC FH EK PS G CF C + + L GC Sbjct: 28 VKVKRR---------MCCCIFHQEKNPSMKVFKD-GV-QCFVCGQNWNVFDVVMQLTGCD 76 Query: 85 F 85 F Sbjct: 77 F 77 >gi|86130634|ref|ZP_01049234.1| DNA primase [Dokdonia donghaensis MED134] gi|85819309|gb|EAQ40468.1| DNA primase [Dokdonia donghaensis MED134] Length = 291 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 4/82 (4%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 + +YW PF E PSF +Y V G + + L +F +++ Sbjct: 24 KSIKNSNYWYLSPFRHELRPSFKVCLRLNRWYDHGEGVGGSIIDLIMRLHKINFHDAIIA 83 Query: 92 LAAI----AGVPLPVVDPKIEK 109 L+ V + K Sbjct: 84 LSKDEFKTYNVSQKKKSTQSSK 105 >gi|53714084|ref|YP_100076.1| DNA primase [Bacteroides fragilis YCH46] gi|253567390|ref|ZP_04844839.1| DNA primase [Bacteroides sp. 3_2_5] gi|255009166|ref|ZP_05281292.1| DNA primase [Bacteroides fragilis 3_1_12] gi|265763635|ref|ZP_06092203.1| DNA primase [Bacteroides sp. 2_1_16] gi|293371338|ref|ZP_06617775.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|294645309|ref|ZP_06723025.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294808770|ref|ZP_06767503.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|313146913|ref|ZP_07809106.1| DNA primase [Bacteroides fragilis 3_1_12] gi|52216949|dbj|BAD49542.1| DNA primase [Bacteroides fragilis YCH46] gi|251943959|gb|EES84487.1| DNA primase [Bacteroides sp. 3_2_5] gi|263256243|gb|EEZ27589.1| DNA primase [Bacteroides sp. 2_1_16] gi|292633698|gb|EFF52253.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292639388|gb|EFF57690.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294444067|gb|EFG12801.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|313135680|gb|EFR53040.1| DNA primase [Bacteroides fragilis 3_1_12] Length = 295 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPKTRALPATSRPVEADMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207 >gi|312888685|ref|ZP_07748253.1| DNA primase [Mucilaginibacter paludis DSM 18603] gi|311298852|gb|EFQ75953.1| DNA primase [Mucilaginibacter paludis DSM 18603] Length = 305 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 + ++ + + + + + ++ K + DY+ P +E SFH N +K ++ Sbjct: 9 TLDEIRA-LDMVDYLA-TIGFEPAKPSRNGVDYYYLSPLRNEDDASFHVNRTKNKWFDHG 66 Query: 67 CHVKGDHLSF 76 G+ + F Sbjct: 67 DGKGGNLIDF 76 >gi|329965373|ref|ZP_08302297.1| hypothetical protein HMPREF9446_03914 [Bacteroides fluxus YIT 12057] gi|328522165|gb|EGF49279.1| hypothetical protein HMPREF9446_03914 [Bacteroides fluxus YIT 12057] Length = 286 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRK---TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+ L +P+ +L R D W P +E+T SF N + ++ Sbjct: 3 IEQLRQ-VPLVDL------LTRLGFAPAYRRGQDVWYRSPLREERTASFKVNTDRNVWFD 55 Query: 65 FSCHVKGDHL 74 F GD Sbjct: 56 FGLGKGGDIF 65 >gi|237719973|ref|ZP_04550454.1| DNA primase [Bacteroides sp. 2_2_4] gi|229450525|gb|EEO56316.1| DNA primase [Bacteroides sp. 2_2_4] Length = 295 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPKTRALPATSRPVEADMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207 >gi|327198271|ref|YP_004306846.1| gp2 [Burkholderia phage KS14] gi|310657234|gb|ADP02347.1| gp2 [Burkholderia phage KS14] Length = 923 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 8/117 (6%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND---SKGF-YY 63 I +L + + L + ++ K +Y P +K PS KG + Sbjct: 4 ITELKRRVDLHELADRLGI--KKGKGGEKANYH--SPHTTDKVPSLSIFPALPEKGEGWK 59 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 S G + + + GC E+++ L G+P +D E+ Sbjct: 60 DHSTGKGGSCIDLVMYVQGCDVSEAMRYLHEAFGIPFDTIDKPAEQTRTKTAIDYIA 116 >gi|240047300|ref|YP_002960688.1| Replicative DNA helicase [Mycoplasma conjunctivae HRC/581] gi|239984872|emb|CAT04865.1| Replicative DNA helicase [Mycoplasma conjunctivae] Length = 452 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 1/115 (0%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E +L + P + L++ + + +L ++ + F E + + L Sbjct: 12 ERVILTYFLRRPDKVHRYINLLSEEDFSDKQLSIIFLAIKELMNNNGSFSVELLIEHLRS 71 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 G EL+ L + + + I + + AL +LL + I Sbjct: 72 YGKLELIGGL-PTIANLSESFLVFDNTIEQYIKIVTEKTALRNLKKLLEESLKNI 125 >gi|332184102|gb|AEE26356.1| Replicative DNA helicase [Francisella cf. novicida 3523] Length = 464 Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 7/166 (4%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K + E A+L ++ + ++ L + + + ++ + + F Sbjct: 8 KAAETTYSLEAEKAILGNILLYNQNIELVEDFLLIDDFFDKRHKTIYRQIVTLNQANTPF 67 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L G L+ +A + T + + Y + + R L Sbjct: 68 DVLILSEYLATEGL------LEEAGGEAYIIDLATNTPSISNIKTYANIVKDKAKLRSLQ 121 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +I ++I +K E S + +V + + + E++ Sbjct: 122 ASVNDIVQKIYSADSKNPDEVIDYAESRILDVAKERETLTKGPESI 167 >gi|293370333|ref|ZP_06616890.1| mobilizable transposon, excision family protein [Bacteroides ovatus SD CMC 3f] gi|292634628|gb|EFF53160.1| mobilizable transposon, excision family protein [Bacteroides ovatus SD CMC 3f] Length = 288 Score = 58.4 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+++ IPI+ + + Y RR +YW P+ +E+T SF N K ++ Sbjct: 2 TIEEIRD-IPIAVFLARMGYEPARRRG-----DEYWYPAPYREERTASFQLNVRKDIWHD 55 Query: 65 FSCHVKGDHLS 75 F GD + Sbjct: 56 FGTGQGGDIFT 66 >gi|297200907|ref|ZP_06918304.1| replicative DNA helicase [Streptomyces sviceus ATCC 29083] gi|197716405|gb|EDY60439.1| replicative DNA helicase [Streptomyces sviceus ATCC 29083] Length = 492 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 64/188 (34%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + + + + ++ + + + + P Sbjct: 55 RVPPQDLDAEQSVLGGMLLSKDAIADVVEVIKGHDFYKPAHETIFQAILDVYAKGEPADP 114 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG ++++ + L + + Y + + R + R+ Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRR 164 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 225 SRSGEMTG 232 >gi|167465250|ref|ZP_02330339.1| DNA primase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 316 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 101/375 (26%), Gaps = 83/375 (22%) Query: 19 NLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHC-----NDSKGFYYCFSCH---- 68 +++ + +D R + A PF D+ TPSF +D G ++ F Sbjct: 4 DVLYELEQFDWRNVRPAADSFIASSPFRTDDDTPSFFVDLREDSDYYGCWHDFG-GTDPE 62 Query: 69 -VKGD---HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 G+ LSFL S+ E+ L D + E + L A Sbjct: 63 WTSGNFTKLLSFLMD---VSYREADDYLRRKY-----ENDEQQETPVLRRVRL-----SA 109 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 +L K+ + Sbjct: 110 ERPKKPALNAELLKQYRH-----------------------------------DHPYLPS 134 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHK 244 T Y +N + P GQ++ R++ + Sbjct: 135 RCISAEVQREMQTGYCPRKNAVTIPWFGPNGQLLNIKYRSVFGKKFWYAKGGR-----PI 189 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + +Y + R+ +VE +D L+L AGV V + G E Sbjct: 190 KELVYGID------------YIYRHRCRRAAIVEAEIDALTLMSAGVPAVAAGGGVINEE 237 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 ++ I + D DD G + I ++ L G + +D + + Sbjct: 238 KAAVIIRSPIEEIFVMADHDDVGQALKREVIRMLGGDLRVGVGGFPIRY---KDVNEAAQ 294 Query: 365 CYGKTAFEKLIVESL 379 G + Sbjct: 295 AEGLRKLREYFERRK 309 >gi|288927993|ref|ZP_06421840.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330827|gb|EFC69411.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 317 str. F0108] Length = 320 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%) Query: 27 WDRRK-----TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 +R+ Y P +E PSF + K + ++ G + L Sbjct: 4 LERKGIKPVRRTPSYALYR--SPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLFMRLE 61 Query: 82 GCSFIESVQRLAAIA 96 C+ E+++RL A Sbjct: 62 NCTLSEAIRRLGQTA 76 >gi|270296179|ref|ZP_06202379.1| DNA primase [Bacteroides sp. D20] gi|270273583|gb|EFA19445.1| DNA primase [Bacteroides sp. D20] Length = 322 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I +Y+ G W PF DE PSF N + +Y F G+ ++ Sbjct: 11 IEEYLHSLGYSPARQQGGSLWYKSPFRDECEPSFKVNTERNLWYDFGAGRGGNIIALAQE 70 Query: 80 L---LGCSFIESVQRLAAIA 96 L ++ ++R+A A Sbjct: 71 LYASDSLPYL--LERIAEQA 88 >gi|51247081|ref|YP_066963.1| related to DNA primase PrmN1 (partial length) [Desulfotalea psychrophila LSv54] gi|50878118|emb|CAG37855.1| related to DNA primase PrmN1 (partial length) [Desulfotalea psychrophila LSv54] Length = 88 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 PF +EKTPSF + K ++ G+ L F+ CS +++ L Sbjct: 33 KYFSPFREEKTPSFDYSPLKNAWFDHGTGEGGNTLDFIIGFQKCSVSQALNFL 85 >gi|119943979|ref|YP_941659.1| replicative DNA helicase DnaB [Psychromonas ingrahamii 37] gi|119862583|gb|ABM02060.1| primary replicative DNA helicase [Psychromonas ingrahamii 37] Length = 466 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 10/159 (6%) Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K P + K E A++ L+ + + + + + + + ++++ Sbjct: 4 KPPFSQQKPKINTPIKTVPHSFEAEQAIIGGLLLNNEAWNDVAERVVERDFYHRAHRQIF 63 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + E + + L + K+L+ A L Y Sbjct: 64 AMIERLSSEDIPVDLVTLSEHLENK------KELEGVGGIAYLAELLQNTPSAANINNYS 117 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + R R + R+ + +IA+ + E + L+ Sbjct: 118 DIV----RERAIVRELIGVANEIAEAGYETEGRDSNELL 152 >gi|319641586|ref|ZP_07996273.1| hypothetical protein HMPREF9011_01871 [Bacteroides sp. 3_1_40A] gi|317386786|gb|EFV67678.1| hypothetical protein HMPREF9011_01871 [Bacteroides sp. 3_1_40A] Length = 295 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 84/252 (33%), Gaps = 12/252 (4%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSALLGCSFIESV 89 N YW P +E+TPSF ND+ +Y F GD + L S + + Sbjct: 24 NTRGCQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDIIELGKHLYRTGNVSVV--L 81 Query: 90 QRLAAIA-GVPLPVVDPKIEKKEKIQTDL--IRLIEVATDFFHHSLKNARDKRLHYYLDE 146 R++ A GVP + + + I+ ++ + + E++ L++ L Sbjct: 82 LRISENAIGVPFQQLQSRSVRPGPIEEEMENVEVRELSHHALLSYLRSRYISENIGRLYC 141 Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG----DNSATSYDRF 202 + I + A +++ E K+ + ++ N ++ F Sbjct: 142 KEIHYELRKRHYFAIAFENKTGGYEVRNPYYKGCIKVKDISVIRYNKDIIQNHVCVFEGF 201 Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262 + L + +G R N + ++ + + + + + + Sbjct: 202 MDFLSYQELHRKGDYHVCIDRPTDFLVMNSVSNLKKCLVELERYTVIHCYLDNDLAGRKT 261 Query: 263 RKDVRRNSSSFI 274 + + + + Sbjct: 262 VETIAGLCGNRV 273 >gi|152990087|ref|YP_001355809.1| replicative DNA helicase [Nitratiruptor sp. SB155-2] gi|151421948|dbj|BAF69452.1| replicative DNA helicase DnaB [Nitratiruptor sp. SB155-2] Length = 471 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 8/158 (5%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC- 542 E ++L +++ PAI ++ L + + + L++ + E + E + ++L Sbjct: 11 ERSVLSSILFDPAIFEDVAARLTPNDFYHPFHKNLFAAMEELAREDQPIDEEFLKEKLEL 70 Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----LLSRQK 595 + L+ L A + + E V++ K+ + Sbjct: 71 KKQFDEAAFLEVLAANPLSANVSAYVEEIKEKAVKRDLVHLTTEIKKITVEQDLPVEDVI 130 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +EI+ ++ ++T + ++ ++ + + +++ Sbjct: 131 DEIQSKLYKITTQTSSQDFKDSTQVMKDTLQHLLKMKE 168 >gi|294785930|ref|ZP_06751218.1| toprim domain-containing protein [Fusobacterium sp. 3_1_27] gi|294487644|gb|EFG35006.1| toprim domain-containing protein [Fusobacterium sp. 3_1_27] Length = 354 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 57/184 (30%), Gaps = 31/184 (16%) Query: 22 GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALL 81 G+Y++ H++K PS CF+C K D + Sbjct: 26 GEYLELK---GIDTSKLMRCFSKEHEDKNPSMSYFAPGKICKCFACGEKYDIFKLVGEEY 82 Query: 82 GC-SFIESVQRLAAIAG-------------------VPLPVVDPKIEKKEKIQTDLIRL- 120 G F E +++ + + L + +E ++ + + + Sbjct: 83 GIEDFKEKAKKVDELYNHRELIEDANKTIYSKKNTFIELSKNEGDVENNKERKNLIYLIP 142 Query: 121 -IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFS 179 E +LK+ YL +RGI E + +GY P+ + + + F Sbjct: 143 RYERYIKRCMDNLKD------CDYLTKRGISKEVQEKYHIGYDPNFKKGEWKAIIIPTFL 196 Query: 180 EEKI 183 Sbjct: 197 CCFT 200 >gi|304382850|ref|ZP_07365333.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304336035|gb|EFM02282.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 310 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 8 IKDLLIHIPISNLIGQYV--DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++++ IPI++ + Y + + A+ P+ ++ S + ++ +Y F Sbjct: 8 LQNIKN-IPIADYLHAYGMQPVKKYGSYALYNA-----PYREDHNASMKVDFARNLWYDF 61 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 G + + L GC E++ LA A Sbjct: 62 GLGKGGSIIDLVMLLQGCDAHEAMTHLAGNA 92 >gi|298528849|ref|ZP_07016252.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529856|ref|ZP_07017258.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298529883|ref|ZP_07017285.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298531204|ref|ZP_07018604.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298531270|ref|ZP_07018670.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298531277|ref|ZP_07018677.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508814|gb|EFI32720.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508880|gb|EFI32786.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298508887|gb|EFI32793.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509230|gb|EFI33134.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509257|gb|EFI33161.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510285|gb|EFI34188.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] Length = 98 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 9/96 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSF--HCNDSK 59 Y R+ ++ L + ++++I V + G CP E F CN Sbjct: 4 RYSREELQRLRNKVLVNDVI---VHILDMPSKVRDGYLRFLCPLCSE----FLTACNPRT 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95 CF C + + + + G +F E+V+ L + Sbjct: 57 NLARCFRCERNFNPIDLVMVVKGLNFREAVEFLQDM 92 >gi|329938671|ref|ZP_08288067.1| replicative DNA helicase [Streptomyces griseoaurantiacus M045] gi|329302162|gb|EGG46054.1| replicative DNA helicase [Streptomyces griseoaurantiacus M045] Length = 492 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 63/226 (27%), Gaps = 26/226 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + G + +G ++ + E ++L ++ Sbjct: 17 SDRLPASRRRGEGGGPARDEQHDRGRDGGAWDGGSAFERVPPQDLDAEQSVLGGMLLSKE 76 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + L + + ++ + + + P I L +RG + ++ Sbjct: 77 AIADVVEILKGHDFYKPAHETIYQAILDVYARGEPSDPITIAAELTKRG---EITKVGGA 133 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613 L A + R + R+ E +I Q+ + E Sbjct: 134 AYLHALVQTVPTAANAEYYAEIVHE-------RAVLRRLVEAGTRITQMGYAADDDVDEI 186 Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 187 VNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 232 >gi|300866564|ref|ZP_07111253.1| hypothetical protein OSCI_3010017 [Oscillatoria sp. PCC 6506] gi|300335428|emb|CBN56413.1| hypothetical protein OSCI_3010017 [Oscillatoria sp. PCC 6506] Length = 1319 Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 46/350 (13%), Positives = 99/350 (28%), Gaps = 57/350 (16%) Query: 33 NAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLS-------AL-LGC 83 + PF + K+ SF S +Y G+ +S++ G Sbjct: 46 QISSDRWRGGSPFRESKSGTSFAVWPSTLRFYDSGMGFAGNPISYVHSLKVGRWEHPKGK 105 Query: 84 SFIESVQRLAAIAG----VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKR 139 ++E+++ L+ +AG P + ++ + + + L + Sbjct: 106 DWVEALRALSHLAGAFDNFPTREPSREQIERAQKWEERRSIFSAVYITCAQHLWSDLGSD 165 Query: 140 LHYY-LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS 198 + ++ERG + G P Q+ L Sbjct: 166 ALNHLIEERGFTESELRDLGAGLYPTLEIVQGAITEQQFNISLAEQCGVLTRK------- 218 Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSP---ETILFHKGKNLYNFFGAL 255 + ++FP + G+ + G + + + + + A Sbjct: 219 ---WEGYVVFPWHNPYGEPLTLYGHWPASKGDIPLKKNHVGWKKEHDTARRAWNKLSEAQ 275 Query: 256 NY--------LQKSIRKDVRRNSSS---------------------FIILVEGYMDVLSL 286 + K ++ S +LVEG D Sbjct: 276 KVAQPWTDAQIPKKYACWNPKDESGSWLATKESPLYFDKVVKANHHEAVLVEGVTDAAIA 335 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLS-PRIVLCFDGDDPGLRAAYKAI 335 G V++ + +L+ Q++ L + R+ +C D D G + I Sbjct: 336 QVKGDSRVMACVAASLSGEQVQTLKRHRVQRVNVCLDPDSAGEKGIISCI 385 >gi|325855559|ref|ZP_08171870.1| hypothetical protein HMPREF9303_1233 [Prevotella denticola CRIS 18C-A] gi|325483773|gb|EGC86733.1| hypothetical protein HMPREF9303_1233 [Prevotella denticola CRIS 18C-A] Length = 328 Score = 58.0 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y P ++ PSF + K + Sbjct: 3 EEDLSRIK-RYPIVEYLERK-GIKPVRRTPAYALYR--SPLREDTHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ E+++ L A Sbjct: 59 YAEGRGGSIIDLCMWLEGCTLSEAIRLLGRNA 90 >gi|304381998|ref|ZP_07364552.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304336833|gb|EFM03055.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 310 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 51/383 (13%), Positives = 96/383 (25%), Gaps = 80/383 (20%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + I + D + Y P +E PSF + K Sbjct: 1 MK--EEDLSAIK-RYSIVEYLESK-DIKPVRKTPTYAMYH--SPLREETHPSFKVDTEKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + ++ G + L GC+ E++ RL P Sbjct: 55 LWIDYAEGRGGSIIDLCMRLEGCTLSEAICRL--------EQNTPDNT------------ 94 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 S++ + +P+ R ++ ++ S Sbjct: 95 ----------------------------THSYSFTNRGISISPNQRENVTASGTRRLISI 126 Query: 181 EKIIEAGLL-IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET 239 + L + ++ L RG+ G S G N Sbjct: 127 SDTLSPHLQEYFKKERCINLEKATPFLKCISYEVRGRRYEAIGFANSSGGYELRDN---- 182 Query: 240 ILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLG 299 + + + + L EG+MD LS + L Sbjct: 183 ------------NTFKGTIAPKGITPIFEDMEQPVCLFEGFMDFLSFLSMKEKVTNQCLV 230 Query: 300 TALTEYQLRLLWKLSPRIVL----CFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSR 355 R + L+ R + D DD G +A + ++ V Sbjct: 231 MNSVSNVARSIRYLNERSITSIRAFLDNDDAGRKAVQEFVNTGFK-----VEDMAVYYRD 285 Query: 356 GEDPDSFIRCYGKTAFEKLIVES 378 +D + F + +KL Sbjct: 286 FKDLNDFHTSRVREQQKKLEKTP 308 >gi|302381202|ref|YP_003817025.1| zinc finger CHC2-family protein [Brevundimonas subvibrioides ATCC 15264] gi|302191830|gb|ADK99401.1| zinc finger CHC2-family protein [Brevundimonas subvibrioides ATCC 15264] Length = 402 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPS--FHC 55 M+ R +D + I +L+ V R + + CP K+P+ F Sbjct: 1 MS-DRKLFEDARSRVEIQDLVKDLVV--RAGSQ-----WRGQCPLCKASKAKSPTGQFAI 52 Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 KG + CF+C GD + L G + +E+ RL Sbjct: 53 KPDKGTWRCFACGQFGDVVDLERELSGGTAVEAAHRL 89 >gi|224367766|ref|YP_002601929.1| DnaG1 [Desulfobacterium autotrophicum HRM2] gi|224367854|ref|YP_002602017.1| DnaG2 [Desulfobacterium autotrophicum HRM2] gi|224367915|ref|YP_002602078.1| DnaG3 [Desulfobacterium autotrophicum HRM2] gi|224368064|ref|YP_002602227.1| DnaG4 [Desulfobacterium autotrophicum HRM2] gi|224369170|ref|YP_002603334.1| DnaG10 [Desulfobacterium autotrophicum HRM2] gi|224369480|ref|YP_002603644.1| DnaG7 [Desulfobacterium autotrophicum HRM2] gi|224370510|ref|YP_002604674.1| DnaG5 [Desulfobacterium autotrophicum HRM2] gi|223690482|gb|ACN13765.1| DnaG1 [Desulfobacterium autotrophicum HRM2] gi|223690570|gb|ACN13853.1| DnaG2 [Desulfobacterium autotrophicum HRM2] gi|223690631|gb|ACN13914.1| DnaG3 [Desulfobacterium autotrophicum HRM2] gi|223690780|gb|ACN14063.1| DnaG4 [Desulfobacterium autotrophicum HRM2] gi|223691887|gb|ACN15170.1| DnaG10 [Desulfobacterium autotrophicum HRM2] gi|223692197|gb|ACN15480.1| DnaG7 [Desulfobacterium autotrophicum HRM2] gi|223693227|gb|ACN16510.1| DnaG5 [Desulfobacterium autotrophicum HRM2] Length = 123 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59 + + +L IP+ LI + ++ + +G + CP +E F N + Sbjct: 4 KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109 CF C + + + + F ESV L V +P + + Sbjct: 57 NLARCFRCEKNFNTIDLVMTVQRIGFKESVLFL-KRLMVKVPNQNKDARQ 105 >gi|253572863|ref|ZP_04850262.1| TraP [Bacteroides sp. 1_1_6] gi|251837595|gb|EES65687.1| TraP [Bacteroides sp. 1_1_6] Length = 292 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 23/93 (24%) Query: 14 HIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I +++ + + + R + W P+ +E+TPSF N +K +Y F G Sbjct: 3 QISLADFLARLGHEPVRRSGN-----ELWYHAPYRNERTPSFRVNVAKRLWYDFGLGKGG 57 Query: 72 DHLS----------------FLSALLGCSFIES 88 D + F++ + F+ + Sbjct: 58 DIFTLAGEFARSGDFMAQAGFIAETVRMPFVSA 90 >gi|225848306|ref|YP_002728469.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644399|gb|ACN99449.1| replicative DNA helicase [Sulfurihydrogenibium azorense Az-Fu1] Length = 467 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 74/180 (41%), Gaps = 14/180 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + E A+L +L+ +P I+ +L + N +++++ + + F + K Sbjct: 7 SPVLPYDEVTERAVLGSLLVYPEIVDIVVTKLKPYDFFNQRHREVFNAIVALFNDSKPIE 66 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-----ANIVDVRQGYQQALALYKRF 588 P + + L ++G +L+ L + + L + E +I+ + + + ++ Sbjct: 67 PILVKEYLEKKGTLDLVGGL-HFLTELALEAVPPETVYQLIDILKEKSTLRSLIESAQKI 125 Query: 589 --------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 ++ EE E I QVT E L +L E I+++ +E ++ G Sbjct: 126 ITKAKSPSTDINTLLEEAESIIFQVTESKETIYYYSLGEVLKETLRIINELAKKETVVTG 185 >gi|270293797|ref|ZP_06199999.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275264|gb|EFA21124.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 295 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 20/43 (46%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 N YW P +E+TPSF ND+ +Y F GD + Sbjct: 24 NVKGYQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDIID 66 >gi|303236909|ref|ZP_07323488.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302483077|gb|EFL46093.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 330 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYSIVEYLERK-GIKPVRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + + + E+++RL A Sbjct: 59 YAEGRGGSIIDLCMRMESSTLSEAIRRLGQNA 90 >gi|288926544|ref|ZP_06420462.1| mobilizable transposon, excision protein [Prevotella buccae D17] gi|288336686|gb|EFC75054.1| mobilizable transposon, excision protein [Prevotella buccae D17] Length = 326 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 6/94 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + + Y P DE PSF + K Sbjct: 1 MK--EEDLSLIK-RYPIVAYLERK-GIKPVRRTPTYALYR--SPLRDETHPSFKVDTEKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 + ++ G + L + E++ RL Sbjct: 55 LWIDYAEGRGGSIIDLCMRLENYTLSEAICRLGQ 88 >gi|21222318|ref|NP_628097.1| replicative DNA helicase [Streptomyces coelicolor A3(2)] gi|256786582|ref|ZP_05525013.1| replicative DNA helicase [Streptomyces lividans TK24] gi|289770473|ref|ZP_06529851.1| replicative DNA helicase [Streptomyces lividans TK24] gi|4808407|emb|CAB42739.1| putative replicative DNA helicase [Streptomyces coelicolor A3(2)] gi|289700672|gb|EFD68101.1| replicative DNA helicase [Streptomyces lividans TK24] Length = 491 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 68/206 (33%), Gaps = 26/206 (12%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + ++GP ++ + E ++L ++ + + + L + + Sbjct: 36 QHERGPDSGWDGGGAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHE 95 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 ++ + + + + P I L +RG ++++ + L + Sbjct: 96 TVYQAILDVYAKGEPADPITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAA 149 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI----- 628 Y + + R + R+ E +I Q+ + E + ++ V Q Sbjct: 150 YYAEIVH----ERAVLRRLVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDY 205 Query: 629 --------HQIESQEAMIEGFGKMSG 646 ++ EA+ G+M+G Sbjct: 206 LPLGDIMEGALDEIEAIGSRSGEMTG 231 >gi|19068107|gb|AAL29918.1| DNA primase [Bacteroides fragilis] Length = 321 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|282878638|ref|ZP_06287408.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] gi|281299237|gb|EFA91636.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] Length = 376 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ + + PI + + + V Y P E PSF + K + Sbjct: 45 KEDLSRIK-RYPIVEYLERK-GIKPVRRTPVYALYR--SPLRAETHPSFKVDTEKNLWID 100 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L C+ E++ RL A Sbjct: 101 YAEGRGGSIIDLCMRLESCTLSEAIHRLGQNA 132 >gi|290959035|ref|YP_003490217.1| replicative DNA helicase [Streptomyces scabiei 87.22] gi|260648561|emb|CBG71672.1| putative replicative DNA helicase [Streptomyces scabiei 87.22] Length = 486 Score = 58.0 bits (138), Expect = 5e-06, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 30/230 (13%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 +L G +++ R RD V + E ++L ++ Sbjct: 12 DRLPPSRRRPDDGGRGREERHDRGRDNGEWDGGGSAFERVPPQDLD----AEQSVLGGML 67 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + + + L + + ++ + + + + P I L +RG + Sbjct: 68 LSKDAIADVVEILKGPDFYKPAHETIYQAILDIYAKGEPADPITIAAELTKRG------E 121 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610 + + + L + + Y + + R + R+ E +I Q+ + Sbjct: 122 ITKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRRLVEAGTRITQMGYAADDD 177 Query: 611 -AEKTAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 E + + V Q ++ EA+ G+M+G Sbjct: 178 VDEIVNRAQAEIFAVTEQRTTEDYLPLGDIMEGALDEIEAIGSRSGEMTG 227 >gi|255284335|ref|ZP_05348890.1| toprim [Bryantella formatexigens DSM 14469] gi|255265131|gb|EET58336.1| toprim [Bryantella formatexigens DSM 14469] Length = 400 Score = 58.0 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 50/348 (14%), Positives = 108/348 (31%), Gaps = 32/348 (9%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 I +++ + ++ R+ N Y CPF + +T + N K + C C+ +G L Sbjct: 10 DIRDVV-RVLNLRIRRKN--SYSYDVDCPFCNFETGKMNINIQKDVFRCNYCNEQGGMLD 66 Query: 76 FLSALLGCSFIESVQRLAAIAGV-------PLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 + L + E+ +++ + +P ++ + E + +++ + Sbjct: 67 LYAKLYHLTKSEANRQIREALNLGQYRDDYKVPEKKKELPEMENSERASDEVLDHT---Y 123 Query: 129 HHSL-KNARDKRLHYYLDERGIDSHAIEMFKLGYAPD-SRYSLREHLRQKGFSEEKIIEA 186 L ++ L RG+ IE + P + L +K + + + Sbjct: 124 AEMLSMLPLSQKHREDLLGRGLTREQIEEQRYRSVPAFGMKEMTRWLLEKECTVQGVPGF 183 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 L DG+ + R ++ PI S G++ F R +S KY+ Sbjct: 184 YLDSDGNWTVNLNARKSG-ILIPILSMEGKIQGFQIRLDQVTDSRKYI------WLSSTN 236 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ-AGVQNVVSSLGT---AL 302 Y S + + + EG + +G + + + Sbjct: 237 YPYG------TSSGSPVHVIGNLDDEEVYVTEGALKGTIAHYLSGNTFLCAPGVNQHRGI 290 Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 LL + + +D D + G Sbjct: 291 APVLEALLKRNLRFVREAYDMDKKMRINCDHHSSHCAQCTLTGQPEYC 338 >gi|260593545|ref|ZP_05859003.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260534533|gb|EEX17150.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 326 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 19/125 (15%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P E PSF + K + Sbjct: 3 EEDLSLIK-RYSIVEYLERK-GIKPVRRTPAYALYR--SPLRAETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 ++ G + L C+ +E+++ L A P + A Sbjct: 59 YAEGRGGSIIDLCMRLESCTLLEAIRHLGRNA--------PDDSAYSSR-------NDFA 103 Query: 125 TDFFH 129 +++F Sbjct: 104 SNYFQ 108 >gi|218260316|ref|ZP_03475688.1| hypothetical protein PRABACTJOHN_01350 [Parabacteroides johnsonii DSM 18315] gi|218224601|gb|EEC97251.1| hypothetical protein PRABACTJOHN_01350 [Parabacteroides johnsonii DSM 18315] Length = 321 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|298483951|ref|ZP_07002121.1| DNA primase [Bacteroides sp. D22] gi|298269860|gb|EFI11451.1| DNA primase [Bacteroides sp. D22] Length = 295 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 32/213 (15%), Positives = 62/213 (29%), Gaps = 18/213 (8%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + R YW P E TPSF ND +Y F Sbjct: 2 TIDEAK-RVRIVDFLA---QLGHRAQYMKSEQYWYLSPLRKEVTPSFKVNDRLNEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIESVQRLAAIA--GVPLPVVD---PKIEKKEKIQTDLI 118 GD + +L S E++ + GV LP E +LI Sbjct: 58 EATGGDLVELGKYLCGTKSVS--EALAYI-KRYVNGVSLPSPRALPATSRPVETDMKNLI 114 Query: 119 RL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 + + H + ++ R+ + G + + Sbjct: 115 IVPLRHHALLSYLHSRMIDSDIGRMFCKEVHYELRQRRYFALAFGNISGGYEVRNPYYKG 174 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +++ + + + ++ F + L + Sbjct: 175 CIKNKDISLIPQSRGEAQSRVCLFEGFMDFLSY 207 >gi|262382830|ref|ZP_06075967.1| DNA primase [Bacteroides sp. 2_1_33B] gi|262295708|gb|EEY83639.1| DNA primase [Bacteroides sp. 2_1_33B] Length = 321 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|240047492|ref|YP_002960880.1| Replicative DNA helicase [Mycoplasma conjunctivae HRC/581] gi|239985064|emb|CAT05057.1| Replicative DNA helicase [Mycoplasma conjunctivae] Length = 461 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 1/134 (0%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 L E +L + P + L++ + + +L ++ + Sbjct: 2 ETKFKPLKMSNHRYNAPDIERIILTYFLRRPDKVHRYINLLSEEDFSDKQLSIIFLAIKK 61 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 F E + + L G EL+ L + + + I + + AL Sbjct: 62 LMNNNGSFSVELLIEHLRSYGKLELIGGL-PTIANLSKSFLVFDNTIEQYIKIVTEKTAL 120 Query: 585 YKRFRLLSRQKEEI 598 +LL + I Sbjct: 121 RNLKKLLEESLKNI 134 >gi|224371932|ref|YP_002606098.1| hypothetical protein HRM2_48860 [Desulfobacterium autotrophicum HRM2] gi|223694651|gb|ACN17934.1| hypothetical protein HRM2_48860 [Desulfobacterium autotrophicum HRM2] Length = 118 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 12/102 (11%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59 + + L +IP+ LI ++ + G + CP +E F N + Sbjct: 4 RFSSRELFKLRNNIPVDILIRDHLQI---PSKIRDGFFRFLCPLCNE----FQTAVNPAT 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 CF C + + + + F +SV L +P+P Sbjct: 57 NLARCFRCEKNFNTIDLVMVVRKYGFRDSVLYLQE---LPVP 95 >gi|253563403|ref|ZP_04840860.1| DNA primase [Bacteroides sp. 3_2_5] gi|251947179|gb|EES87461.1| DNA primase [Bacteroides sp. 3_2_5] Length = 323 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I +Y+ G W PF DE+ PSF N + +Y F G+ ++ Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71 >gi|53712571|ref|YP_098563.1| DNA primase [Bacteroides fragilis YCH46] gi|52215436|dbj|BAD48029.1| DNA primase [Bacteroides fragilis YCH46] Length = 322 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I +Y+ G W PF DE+ PSF N + +Y F G+ ++ Sbjct: 11 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 70 >gi|182437462|ref|YP_001825181.1| putative replicative DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778117|ref|ZP_08237382.1| replicative DNA helicase [Streptomyces cf. griseus XylebKG-1] gi|178465978|dbj|BAG20498.1| putative replicative DNA helicase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658450|gb|EGE43296.1| replicative DNA helicase [Streptomyces cf. griseus XylebKG-1] Length = 491 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 28/223 (12%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 S R +K R +GP + S ++ + E ++L ++ + Sbjct: 19 RLPVSRQRRGDRKGREDRHDRGPDEAWEVGSPGFERVPPQDLDAEQSVLGGMLLSKDAIA 78 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + + + +++ + + + + P + L +RG ++ + Sbjct: 79 DVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKVGGA 132 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAI 616 L + Y + + R + R+ E +I Q+ + E Sbjct: 133 PYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIVNS 188 Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231 >gi|153807825|ref|ZP_01960493.1| hypothetical protein BACCAC_02109 [Bacteroides caccae ATCC 43185] gi|149129434|gb|EDM20648.1| hypothetical protein BACCAC_02109 [Bacteroides caccae ATCC 43185] Length = 323 Score = 57.6 bits (137), Expect = 6e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I +Y+ G W PF DE+ PSF N + +Y F G+ ++ Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71 >gi|298386122|ref|ZP_06995679.1| DNA primase [Bacteroides sp. 1_1_14] gi|298261350|gb|EFI04217.1| DNA primase [Bacteroides sp. 1_1_14] Length = 321 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|116625067|ref|YP_827223.1| hypothetical protein Acid_5997 [Candidatus Solibacter usitatus Ellin6076] gi|116228229|gb|ABJ86938.1| hypothetical protein Acid_5997 [Candidatus Solibacter usitatus Ellin6076] Length = 218 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 46/171 (26%), Gaps = 34/171 (19%) Query: 10 DLLIHIPISNL---IGQYVDWD-RRKTN--AVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 +++ + IS + +G RR Y S +D KG ++ Sbjct: 6 EIISSVRISEVWAALGGG-PLRHRRGRAFWRNGDGY------------SVSLSDEKGVWH 52 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 F G L + + G ++++Q +A +AG+ L + K + Sbjct: 53 DFVSGAGGGVLDLIQHVRGGRRVDALQYVAELAGLTL-----GSRQFSKREKRAHAAHVR 107 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 RG Y +L R Sbjct: 108 QAKHLAQQ----------CAWWVRGYAQALERAKASAYEHGDWDALAWSGR 148 >gi|257440736|ref|ZP_05616491.1| conserved hypothetical protein [Faecalibacterium prausnitzii A2-165] gi|257196831|gb|EEU95115.1| conserved hypothetical protein [Faecalibacterium prausnitzii A2-165] Length = 205 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + + L G E+ RLA GV K Sbjct: 6 RFYCFGCGASGDVIDLAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRHNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFQE 74 >gi|150005000|ref|YP_001299744.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|149933424|gb|ABR40122.1| DNA primase [Bacteroides vulgatus ATCC 8482] Length = 323 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I +Y+ G W PF DE+ PSF N + +Y F G+ ++ Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNIIALAQE 71 >gi|239980819|ref|ZP_04703343.1| replicative DNA helicase [Streptomyces albus J1074] gi|291452679|ref|ZP_06592069.1| replicative DNA helicase [Streptomyces albus J1074] gi|291355628|gb|EFE82530.1| replicative DNA helicase [Streptomyces albus J1074] Length = 489 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 67/226 (29%), Gaps = 26/226 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + R K + + ++ + E ++L ++ Sbjct: 14 DAGPGDRLPASRRRGKGNDGGRDRDGDNWEGGGATAFERVPPQDLDAEQSVLGGMLLSKD 73 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + L + + ++ + + + + P + L +RG ++ + Sbjct: 74 AIADVVEILKGNDFYRPAHETIYQAILDLYAKGEPADPITVAAELTKRG------EITKV 127 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613 L + + Y + + R + R+ E +I Q+ + E Sbjct: 128 GGAPYLHTVVQTVPTAANAEYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 183 Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 184 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 229 >gi|258512882|ref|YP_003186316.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479608|gb|ACV59927.1| replicative DNA helicase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 459 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 10/167 (5%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + ++ E A+L ++ P + E + L + + Q ++ + + Sbjct: 11 REAEAALRMPPHNLEAEQAVLGAMLISPDAVVEAMEILEADDFYRSAHQAIYRAIREVYE 70 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + RL +G++L + A L + A A R Sbjct: 71 AGDPVDIITVASRLRT--YGDVLDAVGGPEYLADLAAMMPTAL------HVVHY-AEIVR 121 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + L R+ +IA+ + +A +++ + +++ Q + Sbjct: 122 EKALLRRIISAGTRIAEAAYEPDA-SAMEVLADAERLVLELSQHQRT 167 >gi|163815093|ref|ZP_02206478.1| hypothetical protein COPEUT_01249 [Coprococcus eutactus ATCC 27759] gi|158449613|gb|EDP26608.1| hypothetical protein COPEUT_01249 [Coprococcus eutactus ATCC 27759] Length = 205 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 +YCF C GD + F + L G E+ RLA GV K Sbjct: 6 RFYCFGCRASGDVIDFAALLHGLGKREAAVRLAEDFGVS-YEKSGNAPPDRKRNNRSQPR 64 Query: 121 IEVATDFFHH 130 + A F Sbjct: 65 QKSAEQRFQE 74 >gi|288925968|ref|ZP_06419897.1| mobilizable transposon, excision protein [Prevotella buccae D17] gi|288337188|gb|EFC75545.1| mobilizable transposon, excision protein [Prevotella buccae D17] Length = 320 Score = 57.2 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + + Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYPIVEYLERR-GIRPVRKTPAYAMYR--SPLREETRPSFKVDREKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ E++ RL A Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90 >gi|117923574|ref|YP_864191.1| primary replicative DNA helicase [Magnetococcus sp. MC-1] gi|117607330|gb|ABK42785.1| primary replicative DNA helicase [Magnetococcus sp. MC-1] Length = 460 Score = 57.2 bits (136), Expect = 7e-06, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 48/169 (28%), Gaps = 12/169 (7%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + L Q K + E ++L ++ ++ L + +K Sbjct: 2 EPLNSGSPLGQDPDAPKKRATWSREAEQSVLGAILLDNHVMDSVADALDVDDFYMGAHRK 61 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATT 567 ++ + + P I Q L ELL + Sbjct: 62 IYQAMLDLLERGEPLDPVVIRQYLERSDELDSVGGPVYLAELLNTVPTAANAKAYARMVR 121 Query: 568 EANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + ++ + + + + EE E++I Q+ ++ ++ Sbjct: 122 DKALLRGLAQTATEVVERCHTSEAPVDQILEEAEQKIFQLGESKDSRRS 170 >gi|317480756|ref|ZP_07939842.1| DNA primase [Bacteroides sp. 4_1_36] gi|319644229|ref|ZP_07998742.1| DNA primase [Bacteroides sp. 3_1_40A] gi|316903097|gb|EFV24965.1| DNA primase [Bacteroides sp. 4_1_36] gi|317384220|gb|EFV65192.1| DNA primase [Bacteroides sp. 3_1_40A] Length = 322 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 77/286 (26%), Gaps = 25/286 (8%) Query: 14 HIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I I + Y R+ W PF DE PSF N + +Y F G Sbjct: 8 RIRIEEYLHSLGYSPVRRQGN-----SLWYKSPFRDECEPSFKVNTERNLWYDFGASKGG 62 Query: 72 DHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 + ++ L ++ ++++A A V + K + + +++ Sbjct: 63 NIIALAQELYASDSLPYL--LEKIAEQAPNVRPVSFSFGGQPFSKPSFRQLEAVPLSSPA 120 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 L+ + + +R E + + Sbjct: 121 LFSYLRQRGINTELAKRECCEVRYQTDGKPYFAVGFPNRSGGYEIRNKFFKGCIAPKDIT 180 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS---------PE 238 + T Y + ++ GR G+ LNS P Sbjct: 181 HIRQEQTKETCYLFEGFMDYLSFLTL--RLERCPGRPELDGQDYIVLNSTASLSKAIHPL 238 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 H L N A + +R++ + GY D+ Sbjct: 239 GDYEHIHCFLDN-DKAGMEAVQELREEYGMRIRDASHIYGGYNDLN 283 >gi|154489828|ref|ZP_02030089.1| hypothetical protein PARMER_00056 [Parabacteroides merdae ATCC 43184] gi|329960368|ref|ZP_08298793.1| hypothetical protein HMPREF9446_00352 [Bacteroides fluxus YIT 12057] gi|154089270|gb|EDN88314.1| hypothetical protein PARMER_00056 [Parabacteroides merdae ATCC 43184] gi|328532806|gb|EGF59588.1| hypothetical protein HMPREF9446_00352 [Bacteroides fluxus YIT 12057] Length = 321 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 15/101 (14%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y R+ W P +E SF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106 G+ ++ L F +S+ L + P Sbjct: 57 GAGKGGNIIALAKELY---FSDSLPYLLKR----IEEQTPN 90 >gi|160886771|ref|ZP_02067774.1| hypothetical protein BACOVA_04784 [Bacteroides ovatus ATCC 8483] gi|298383595|ref|ZP_06993156.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] gi|156107182|gb|EDO08927.1| hypothetical protein BACOVA_04784 [Bacteroides ovatus ATCC 8483] gi|298263199|gb|EFI06062.1| mobilizable transposon, excision protein [Bacteroides sp. 1_1_14] Length = 295 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 69/225 (30%), Gaps = 26/225 (11%) Query: 7 FIKDLLIHIPISNLI---GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I + + I + + G + + YW P +E+TPSF ND +Y Sbjct: 2 TIAEAKQ-VRIVDFLARLGHHTQHIKSG------QYWYLSPLRNERTPSFKVNDRINEWY 54 Query: 64 CFSCHVKGDHL---SFLSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 F GD + ++ S E+ ++RL G LP ++ ++ Sbjct: 55 DFGEATGGDLVELAKYICRTDCVS--EALAYIERLVN--GASLPRTRMLTAPPRPVEAEM 110 Query: 118 IRL------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 + + L +A R++ + G Sbjct: 111 KDVIVIPLRHHALFSYLQSRLIDADISRMYCKEVHYELRGRHYFALAFGNISGGYEVRNA 170 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216 + + +++ + L + + ++ F + L + G Sbjct: 171 YYKGCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215 >gi|189465350|ref|ZP_03014135.1| hypothetical protein BACINT_01699 [Bacteroides intestinalis DSM 17393] gi|189437624|gb|EDV06609.1| hypothetical protein BACINT_01699 [Bacteroides intestinalis DSM 17393] Length = 307 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYPPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|29830827|ref|NP_825461.1| replicative DNA helicase [Streptomyces avermitilis MA-4680] gi|29607940|dbj|BAC71996.1| putative replicative DNA helicase [Streptomyces avermitilis MA-4680] Length = 491 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 62/188 (32%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + + + + P Sbjct: 55 RVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGHDFYKPAHETIYQAILDIYAKGEPADP 114 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG ++ + + L + + Y + + R + R+ Sbjct: 115 ITIAAELTKRG------EITKVGGASYLHTLVQTVPTAANAEYYAEIVH----ERAVLRR 164 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + + V Q ++ EA+ Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIFAVTEQRTTEDYLPLGDIMEGALDEIEAIG 224 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 225 SRSGEMTG 232 >gi|317503740|ref|ZP_07961754.1| conserved hypothetical protein [Prevotella salivae DSM 15606] gi|315665147|gb|EFV04800.1| conserved hypothetical protein [Prevotella salivae DSM 15606] Length = 192 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + + Y P ++ PSF + K Sbjct: 1 MK--EEDLSLIK-RYPIVEYLERK-GIKSVRRTPSYALYR--SPLREDMHPSFKVDTEKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 + ++ G + L GC+ E+++ L Sbjct: 55 LWIDYAEGKGGSIIDLCMRLEGCTLSEAIRHLGR 88 >gi|160944667|ref|ZP_02091894.1| hypothetical protein FAEPRAM212_02181 [Faecalibacterium prausnitzii M21/2] gi|158443851|gb|EDP20855.1| hypothetical protein FAEPRAM212_02181 [Faecalibacterium prausnitzii M21/2] Length = 149 Score = 57.2 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-----LPVVDPKIEKKEKIQT 115 ++CF C GD + F + L S ++ ++LAA G+ P+ +EK + Sbjct: 6 RFHCFGCGADGDVIDFTAKLFQLSLRQAAEKLAADFGLSATDNFQPLPCKPVEKPLSPKE 65 Query: 116 DLIRLI 121 +++ Sbjct: 66 QFYKIL 71 >gi|294630305|ref|ZP_06708865.1| replicative DNA helicase [Streptomyces sp. e14] gi|292833638|gb|EFF91987.1| replicative DNA helicase [Streptomyces sp. e14] Length = 492 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + + + + P Sbjct: 55 RVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETIYQAILDVYAKGEPADP 114 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG ++++ + L + Y + + R + R+ Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 164 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 225 SRSGEMTG 232 >gi|42561472|ref|NP_975923.1| replicative DNA helicase DnaC [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492971|emb|CAE77565.1| replicative DNA helicase DnaC [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 438 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ L + L + + ++ + + K P + RL Sbjct: 13 AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + +L++ D ++ E + Y + R L +E+E I Sbjct: 72 -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124 Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + + ++ + L ++ + I + E IE G+++ R+ Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVANRV 166 >gi|291514252|emb|CBK63462.1| DNA primase (bacterial type) [Alistipes shahii WAL 8301] Length = 321 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|189467404|ref|ZP_03016189.1| hypothetical protein BACINT_03792 [Bacteroides intestinalis DSM 17393] gi|189435668|gb|EDV04653.1| hypothetical protein BACINT_03792 [Bacteroides intestinalis DSM 17393] Length = 321 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 14/116 (12%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDL 117 G+ ++ L ++ + R+A + +KE L Sbjct: 57 GAGKGGNIIALAKELYCSDSLPYL--LNRIAEQTPHIRPVSFSFPQRRKEPSFQHL 110 >gi|296876472|ref|ZP_06900523.1| probable primase/helicase [Streptococcus parasanguinis ATCC 15912] gi|296432465|gb|EFH18261.1| probable primase/helicase [Streptococcus parasanguinis ATCC 15912] Length = 643 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 56/387 (14%), Positives = 116/387 (29%), Gaps = 59/387 (15%) Query: 32 TNAVKGDYWA-CCPFHDE----KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-F 85 KG Y C H +T +FH D + CFSC GD + + G F Sbjct: 21 RKGGKGAYICPLC--HSGEGRNRTGAFHIYDETQ-WKCFSCDRGGDIFDLIGYIEGIDKF 77 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 + ++R+ + + K ++ E + + Sbjct: 78 KDQLKRVRELFNLSTECDGFKNQRTE---------------------FLNYNAVFPLKGE 116 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 E+ + + + + ++ Y L+ R F + + G + + + Sbjct: 117 EKKDNYSSFYNEAIKHLCETDYFLK---RGLSFPTVQQFKVGYVKKWKHPHVTNPNVPET 173 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKD 265 I S A R + + + + + N + + Sbjct: 174 PRLIIPLSESCYFARDTREIVPE--PQLNYTKQKVGGSDIFN---------------KSE 216 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL---WKLSPRIVLCFD 322 + + S+ I +VEG +D +S+ V LG+ +L L K+ +L D Sbjct: 217 LFKKSADPIFIVEGEIDAMSI--VEVGGKAVGLGSIGNIKKLINLVSDLKIDRTFILSLD 274 Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG---KTAFEKLIVESL 379 D+ G A K + + + + +DP+ + E I ++ Sbjct: 275 QDEKGREAELKLAE-QFRNKKIKFISFKLTIDDVKDPNDMLVKNKGVFNKMVEYAINQTK 333 Query: 380 PLVDMLWKRETENRSFNTPDERAELEI 406 + + T N ++ Sbjct: 334 SEKERYLEYSTANHLPKFFNDITNGSN 360 >gi|282858309|ref|ZP_06267494.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|303236463|ref|ZP_07323050.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|282588940|gb|EFB94060.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] gi|302483314|gb|EFL46322.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 334 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 4/113 (3%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYSIVEYLERK-GIKPLRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 ++ G + L GC+ E++ RL A + K + +Q + Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNATDNITYSSHKDFSQNNLQPTM 111 >gi|301321483|gb|ADK70126.1| replicative DNA helicase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 438 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ L + L + + ++ + + K P + RL Sbjct: 13 AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + +L++ D ++ E + Y + R L +E+E I Sbjct: 72 -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124 Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + + ++ + L ++ + I + E IE G+++ R+ Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVANRV 166 >gi|317480477|ref|ZP_07939571.1| DNA primase [Bacteroides sp. 4_1_36] gi|316903371|gb|EFV25231.1| DNA primase [Bacteroides sp. 4_1_36] Length = 70 Score = 57.2 bits (136), Expect = 9e-06, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I +Y+ G W PF DE+ PSF N + +Y F G+ + Sbjct: 12 IEEYLHSLGYSPVRQQGGSLWYNSPFRDEQEPSFKVNTERNLWYDFGAGKGGNII 66 >gi|304383271|ref|ZP_07365739.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304335607|gb|EFM01869.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 308 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 6/96 (6%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + Y P +E PSF + K Sbjct: 1 MK--EEDLSLIK-RYPIVEYLERR-GIRPVHKTPTYAMYR--SPLREETRPSFKVDREKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 + ++ G + L GC+ E++ RL A Sbjct: 55 LWIDYAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90 >gi|160940710|ref|ZP_02088053.1| hypothetical protein CLOBOL_05604 [Clostridium bolteae ATCC BAA-613] gi|158436445|gb|EDP14212.1| hypothetical protein CLOBOL_05604 [Clostridium bolteae ATCC BAA-613] Length = 407 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 65/227 (28%), Gaps = 13/227 (5%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 ++ L+G + RR + + A CPF ++ + N K + C C G L Sbjct: 2 ADVAGLVG--LQIKRRGS----ISWEAYCPFCQDEKGKMNLNLKKNVFRCNRCGESGGML 55 Query: 75 SFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT------DFF 128 L + + + G KI+ K+ Q A + Sbjct: 56 DLYGKLYHVDHGTACSEIKELLGRETEKKPYKIQAKKVEQKIPEIPQAEAAGIEACNKTY 115 Query: 129 HHSLKN-ARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG 187 L+ + L ERG IE Y K + + Sbjct: 116 TRMLEMLPLAESHRTNLLERGFSEEKIEENGYKSTLVFGYRKLAERLLKAGCTLQGVPGF 175 Query: 188 LLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++ + P+R+ G + A R + KY+ Sbjct: 176 YQDKEGRWTVNFSAKNAGFLVPVRNMDGLITAMQIRLDHPYDGRKYV 222 >gi|326430610|gb|EGD76180.1| hypothetical protein PTSG_00886 [Salpingoeca sp. ATCC 50818] Length = 1612 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 40/256 (15%), Positives = 87/256 (33%), Gaps = 38/256 (14%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Q L+ + S K K +++ L + + Sbjct: 751 REKMLQEKVGDLEASEAALRDQLSAAEEKVKALETELQAKTDELDAIRAELESVSANMRA 810 Query: 481 SLREAALLLTLIN-----HPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYF 532 + L ++N H A + E++D++ E +++ + + EQ Sbjct: 811 AAEAGLSLTEMLNKLKEEHAAKVAALEAEISDLKKKVAEYERILQGVKEMLENQGEQGDA 870 Query: 533 LPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------- 582 +I +L +R L +L+R +R+ A ++ + +RQ +Q Sbjct: 871 DAGDIIAQLKKRLEMSDALQAELERSLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEE 930 Query: 583 ---ALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----------------EKTAILISILH 622 L +++ L Q ++E +A G+ E+ L+ L Sbjct: 931 RLADLQQQYDELDAQYRKLEALLASAGGHGDDREEELVQEGAAADMSMGERLQKLLQELR 990 Query: 623 EVHIQIHQIESQEAMI 638 E +I ++++ EA + Sbjct: 991 EQAEEIARLKAAEASL 1006 Score = 42.6 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + Q L + + + R + + L S + Sbjct: 721 KEEVARVTQALRDEEDARAAQAEELEQTQRREKMLQEKVGDLEASEAALRDQLSAAEEKV 780 Query: 485 AAL---LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 AL L + ++ + + ++ E + + + E+ + + Sbjct: 781 KALETELQAKTDELDAIRAELESVSANMRAAAEAGLSLTEMLNKLKEEHAAKVAALEAEI 840 Query: 542 CERGFGELLKQLDRQVR-DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + +R ++ + E D Q L KR + + E+E+ Sbjct: 841 SD--LKKKVAEYERILQGVKEMLENQGEQGDADAGDIIAQ---LKKRLEMSDALQAELER 895 Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEA 636 + ++ + + + A L L ++ ++ Q+E + A Sbjct: 896 SLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEERLA 933 Score = 37.2 bits (84), Expect = 9.6, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 15/215 (6%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + L+++ ++ + S + + + + +K + + + Sbjct: 887 DALQAELERSLREMEEELAAKDSELAQLRQDLEQLQLRKSQLEERLADLQQQYDELDAQY 946 Query: 482 LREAALLLTLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ALL + H +E + A LQKL L E Sbjct: 947 RKLEALLASAGGHGDDREEELVQEGAAADMSMGERLQKLLQELREQAEEIARLKAA---- 1002 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRLLSRQKEEI 598 E ++QL++ +A A++ D QQA + + + E+ Sbjct: 1003 ---EASLRSQVEQLEKDKAEAQDTI----ADLEDQVAALQQAREEVEGKLERAMERIHEL 1055 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 E +IA++ A+ E KT L + IE Sbjct: 1056 ELEIARLKAQLEKLKTLTATQRL-ALEQHKEVIEK 1089 >gi|227548527|ref|ZP_03978576.1| replicative DNA helicase [Corynebacterium lipophiloflavum DSM 44291] gi|227079356|gb|EEI17319.1| replicative DNA helicase [Corynebacterium lipophiloflavum DSM 44291] Length = 498 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 65/198 (32%), Gaps = 12/198 (6%) Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E + R + G + + L + + E ++ ++ P + Sbjct: 18 IPPEPEDEPAGSPRGGSSRYRGGSNFNRSRDDLREYRQPPHDERAERGVIGAMLLSPDTI 77 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 E EL + Q +++ + F + +L L QL+R Sbjct: 78 IEVSNELRAEDFYFPAHQLIFTAILQLFSGGANIDVLIVAGQLDR------LNQLERVGG 131 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 L + +E + Y + +A + L RQ + Q+ +G E+ + Sbjct: 132 APYLHTLISEVPTAANARYYAEIVA----EKSLLRQLVNAGTNVVQLGYEG--EEGMEVE 185 Query: 619 SILHEVHIQIHQIESQEA 636 +++ +I + +EA Sbjct: 186 ALVDRAQQEIFNVSRKEA 203 >gi|218291256|ref|ZP_03495240.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1] gi|218238858|gb|EED06069.1| replicative DNA helicase [Alicyclobacillus acidocaldarius LAA1] Length = 459 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 10/167 (5%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 Q + ++ E A+L ++ P + E + L + + Q ++ + + Sbjct: 11 QGAEAALRMPPHNLEAEQAVLGAMLISPDAVVEALEILEADDFYRSAHQAIYRAIREVYE 70 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + RL +G++L + A L + A A R Sbjct: 71 AGDPVDIITVASRLRT--YGDVLDAVGGPEYLADLAAMMPTAL------HVVHY-AEIVR 121 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + L R+ +IA+ + +A +++ + +++ Q + Sbjct: 122 EKALLRRIISAGTRIAEAAYEPDA-SAMEVLADAERMVLELSQHQRT 167 >gi|237714823|ref|ZP_04545304.1| DNA primase [Bacteroides sp. D1] gi|262406904|ref|ZP_06083453.1| DNA primase [Bacteroides sp. 2_1_22] gi|294646184|ref|ZP_06723839.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294810605|ref|ZP_06769256.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] gi|229445148|gb|EEO50939.1| DNA primase [Bacteroides sp. D1] gi|262355607|gb|EEZ04698.1| DNA primase [Bacteroides sp. 2_1_22] gi|292638479|gb|EFF56842.1| conserved hypothetical protein [Bacteroides ovatus SD CC 2a] gi|294442198|gb|EFG11014.1| conserved hypothetical protein [Bacteroides xylanisolvens SD CC 1b] Length = 321 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNII 65 >gi|303235422|ref|ZP_07322037.1| conserved domain protein [Prevotella disiens FB035-09AN] gi|302484370|gb|EFL47350.1| conserved domain protein [Prevotella disiens FB035-09AN] Length = 153 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + I + + + Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYSIVEYLERK-GIKPLRRTPSYALYR--SPLREETHPSFKVDTQKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ E++ RL A Sbjct: 59 YAEGRGGSIIDLCMRLEGCTLSEAICRLGQNA 90 >gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638] gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM 2638] Length = 788 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 103/346 (29%), Gaps = 59/346 (17%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 CPFH + PSF N + ++ C C GD + + E + G Sbjct: 33 GKCPFHADDNPSFGYNFEEDYFNCLAGCTDCGDLIKLYGLVNNLPNDEGFKSFKDKYGQG 92 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 + + ++ + + + + ++ Sbjct: 93 VKDAPKPRKTVQQKRKE------------------GKGGSTPVIPESVWG--------RM 126 Query: 160 GYAPDSRYSLREHLRQKG---FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216 PD + + +R + D D + + R+ PIR ++GQ Sbjct: 127 ALLPDDWFEVFRKVRGWSPEVIKRHDLRMQMCYRDRDENIRPINGAPMRVAIPIRDAQGQ 186 Query: 217 VIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIIL 276 + R + + I + +G F AL + KS I+L Sbjct: 187 L-----RNIRLYRKPGTNLKSKIISWGRGYGNARLFPALPMIAKS----------GPIVL 231 Query: 277 VEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAI 335 EG D +LC ++ + ++ L R ++L +D D PG A KAI Sbjct: 232 CEGEPD--TLCGESFGFNTATQTSKTVKWSQDHLEPFVGRDVILAYDADQPGQAHAEKAI 289 Query: 336 D-----------LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + + G D F +GKTA Sbjct: 290 RALLPVVRSLRIIEWPDFMGREPDGSWPEKDGHDLTDFFMKFGKTA 335 >gi|331703855|ref|YP_004400542.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384335|gb|ACU78905.1| replicative DNA helicase [Mycoplasma mycoides subsp. capri str. GM12] gi|256385168|gb|ACU79737.1| replicative DNA helicase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455521|gb|ADH21756.1| replicative DNA helicase [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802410|emb|CBW54565.1| Replicative DNA helicase DnaC [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 438 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 60/167 (35%), Gaps = 14/167 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ L + L + + ++ + + K P + RL Sbjct: 13 AERFVLGVAMSFSNALADIVSVLKVDDFSIPANKYIYQAIIDLNNKNKSISPISVINRL- 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + +L++ D ++ E + Y + R L +E+E I Sbjct: 72 -----EAINKLEQVGGDVVVYEIAAENYTDQGLEEYIDIIHKAGVIRKLDIVIKELE--I 124 Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + + ++ + L ++ + I + E IE G+++ R+ Sbjct: 125 KRNNSNTDVDELLKVAQTKLLDIDLSIKRFE-----IEPIGEVAKRV 166 >gi|225850833|ref|YP_002731067.1| replicative DNA helicase [Persephonella marina EX-H1] gi|225646403|gb|ACO04589.1| replicative DNA helicase [Persephonella marina EX-H1] Length = 483 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 64/176 (36%), Gaps = 11/176 (6%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E A+L +L+ P+++ L + N++ + ++ + + K Sbjct: 7 PLPHDEESERAILGSLMIEPSVVDLVLNILRPSDFFNSKHRIIYQAIIDISEKGKVPDIL 66 Query: 536 EIHQRLCERGFGELL-----------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L +G + + + V ++ ++ + Q Q + Sbjct: 67 VVRNHLKSKGKLKQIGGSSYLGLIVNEACPPNVVESVARQIKEKSIARGLIQVSQNIIQK 126 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 K ++ ++ EE E +I ++ + + ++ E I+++ +E +I G Sbjct: 127 AKDYKDVNELVEEAESEIFKLNEERAVTHYYEIKDVVKETLNIINELSKKETVITG 182 >gi|237713428|ref|ZP_04543909.1| DNA primase [Bacteroides sp. D1] gi|262407215|ref|ZP_06083763.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446410|gb|EEO52201.1| DNA primase [Bacteroides sp. D1] gi|262354023|gb|EEZ03115.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 295 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Query: 8 IKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I + I + +IG NA YW P +E+TPSF ND+ +Y Sbjct: 3 INEAKQ-IRLVEYLRIIGH------SPVNARGCQYWYLSPLREERTPSFKVNDNLNEWYD 55 Query: 65 FSCHVKGDHL 74 F GD + Sbjct: 56 FGLSAGGDII 65 >gi|50364899|ref|YP_053324.1| DNA replication priming helicase [Mesoplasma florum L1] gi|50363455|gb|AAT75440.1| DNA replication priming helicase [Mesoplasma florum L1] Length = 448 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 19/177 (10%), Positives = 61/177 (34%), Gaps = 12/177 (6%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E +L ++ P L + L + ++ + ++ + + K Sbjct: 7 SENNLHSVEKMVLAIAMHSPNALPDIMTGLVADDFLDSTHKIIFQGIIELHSQSKEVTIS 66 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDV---------RQGYQQALAL 584 + ++ ++G E + + R A + + I D+ ++ L Sbjct: 67 SVANQIEKKGNLESIGGIQRLQDIALDFFSDEGIENFIEDIFYASSSRKFDAALRRVQNL 126 Query: 585 YKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + ++ + EI+K++ ++ + + + + +I ++E + + G Sbjct: 127 RREEQMDIESSINEIQKELLKIDLNAQKNDVQSIHASTESLIKKIQELEKRSETLTG 183 >gi|312621802|ref|YP_004023415.1| hypothetical protein Calkro_0705 [Caldicellulosiruptor kronotskyensis 2002] gi|312202269|gb|ADQ45596.1| hypothetical protein Calkro_0705 [Caldicellulosiruptor kronotskyensis 2002] Length = 370 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 19/304 (6%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS----FIESVQRL--AAIAGVPLPVVDPK 106 + N K +YC C V G+ L + L + E VQ L A A + Sbjct: 46 LYINVYKNTFYCHKCGVGGNALQLYAWLNNLDTKEAYREIVQELKGAKRARKAVAEPTAT 105 Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 +L + E + L D +L RG+ + Sbjct: 106 YNVNVVKTENLAPV-EQRDLVYREFLNLLDLDDEHREHLLGRGLTDTFTKFKMYKSLNIK 164 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 R+ + +K + +E ++ N P+R G++ R + Sbjct: 165 DEKSRKEICKKLIEKGLTLEGVPGFFRHSNGDWDFIPYNGFCIPVRDLEGRIQGLQVRIV 224 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 N + F G GA N++ + R FII D+ S Sbjct: 225 GDT------NGGKYRWFSSGNIPTGT-GAKNFVHVVGTFNEERYKRVFIIEGALKADICS 277 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLW----KLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 G + + + ++ K + + D D + + + + Sbjct: 278 YLMDGEMFIGIPGIANSHDQVVEVVKKLGLKYEGEVYVVVDNDYYDKKEVKNSFERIKKK 337 Query: 342 LIPG 345 Sbjct: 338 FNDN 341 >gi|224371487|ref|YP_002605651.1| hypothetical protein HRM2_44310 [Desulfobacterium autotrophicum HRM2] gi|223694204|gb|ACN17487.1| conserved hypothetical protein [Desulfobacterium autotrophicum HRM2] Length = 123 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 10/110 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59 + + +L IP+ LI + ++ + +G + CP +E F N + Sbjct: 4 KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109 CF C + + + + F ESV L V +P + + Sbjct: 57 NLARCFRCERNFNTIDLVMTVQRIGFKESVLFL-KRLMVKVPNQNKDARQ 105 >gi|17545686|ref|NP_519088.1| hypothetical protein RSc0967 [Ralstonia solanacearum GMI1000] gi|17427980|emb|CAD14669.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000] Length = 933 Score = 56.4 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 37/119 (31%), Gaps = 8/119 (6%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 L I + +L + +D R P H +++ S + + +S Sbjct: 14 DQLKRDIDLHDL-AERLDLRRSGAKGNYH-----SPHHTDRSASLSIFERGRAWKDWSTE 67 Query: 69 VKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVAT 125 G + + + +E+ + L G+P+P K + I A Sbjct: 68 AGGSCIDLVQHCMPDVATPMEAAKLLGQWYGIPMPAAPASALLARKSTEEYIAERAQAN 126 >gi|291087422|ref|ZP_06571938.1| hypothetical protein CLOM621_07251 [Clostridium sp. M62/1] gi|291075111|gb|EFE12475.1| hypothetical protein CLOM621_07251 [Clostridium sp. M62/1] Length = 2511 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 106/338 (31%), Gaps = 44/338 (13%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + + YCFSC D+L F+ L F + + P++ K++K Sbjct: 1 MYLYNDSNLAYCFSCQKSWDNLEFIGEKLDLDFQGRLSW--------MEKHFPELLKQKK 52 Query: 113 -----IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 Q L ++A + ++ + + L + RG + E + A ++ Sbjct: 53 TFPVFPQKTLQSGYDIAFQAY-SNMSDKEQRLLKEFCGHRGFEEPFFEKQSIFCAAKNKL 111 Query: 168 SLREHLRQKGFSEEKI-------IEAGLLIDGDNSAT------SYDRFRNRLIFPIRSSR 214 S + + L+I S R+ +I P+R S Sbjct: 112 SSLYCRSENSTDANLTIEERLKLEDCKLVIKLPWQERQTAPRYSDHFSRDGIIIPLRDSS 171 Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFI 274 G++ F R L + S K LY K + N + I Sbjct: 172 GKLAGFAQRALDGTQPKYLF-SKNLP---KKTLLYGID-----SLKKRLSAAKANQKTDI 222 Query: 275 ILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL-------LWKLSPRIVLCFDGDDPG 327 +VEG D L + +N+ + + + I +C D D G Sbjct: 223 FIVEGIFDALRIESLEKKNISALAVLGNRLTKTQAGELQNVLSGSSGLSIHICMDADRAG 282 Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRG-EDPDSFIR 364 + + + + + G +DPD+ I+ Sbjct: 283 RTGNLETLKSLWAYSDFMKYYIDFWVPLGEKDPDAAIQ 320 >gi|113478315|ref|YP_724376.1| hypothetical protein Tery_4989 [Trichodesmium erythraeum IMS101] gi|110169363|gb|ABG53903.1| NB-ARC [Trichodesmium erythraeum IMS101] Length = 1243 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 75/255 (29%), Gaps = 18/255 (7%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 ++ EL HI+D+ R A+ D+ +L + + + Sbjct: 835 EKLPELLPEALAAARHIQDEYYRALVLSALADKFPELLPEALAAARHIQSERGRAHVLSA 894 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 L+ +L + + R L P +L E A + + Sbjct: 895 LAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALA--AARHIQDEYYRA- 951 Query: 519 WSFLFSDFVEQKYFLPEEIHQ--RLCERGFG-ELLKQLDRQVRDAGLWSATT---EANIV 572 L + + LPE + + + + ++L L ++ L A Sbjct: 952 -QVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKLPAELLPEALAAARHIQSE 1010 Query: 573 DVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 R ALA LL Q EE ++ A+ E ++ + Sbjct: 1011 HFRAHVLSALAEKLPAELLPEALAAARHIQFEEARAKVLSALAEKLPELLPEALAAARHI 1070 Query: 625 HIQIHQIESQEAMIE 639 + + + A+ E Sbjct: 1071 QSEWDRAQVLSALAE 1085 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 79/259 (30%), Gaps = 17/259 (6%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF-QKYITEHSGYGRYWKKNARHR 457 D+ EL HI+D+ R A+ D+ +L + G + Sbjct: 710 DKFPELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQGETHRAQVLSA 769 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 K + L+ +L + + R L P +L E A + + Sbjct: 770 LAKKLTPELLPEALAAARHIQHDKYRAQVLSALAEKFPELLPEALA--AARHIQSERGRA 827 Query: 518 LWSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 L L + + LPE + + + + L+ L A A + Sbjct: 828 L--VLSALAEKLPELLPEALAAARHIQDEYYRALVLSALADKFPELLPEALAAARHIQSE 885 Query: 576 QGYQQAL--------ALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVH 625 +G L L +R ++ Q+ A+ E ++ + Sbjct: 886 RGRAHVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALAAARHIQ 945 Query: 626 IQIHQIESQEAMIEGFGKM 644 + ++ + A+ E F ++ Sbjct: 946 DEYYRAQVLSALAEKFPEL 964 Score = 44.1 bits (102), Expect = 0.067, Method: Composition-based stats. Identities = 31/262 (11%), Positives = 78/262 (29%), Gaps = 29/262 (11%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 EL HI+D+ R A+ D+ +L + + + + Sbjct: 682 PELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQDKYDRAQVLSALAD 741 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTL-----------------INHPAILQEQYQE 504 L+ +L + + + R L I H + Sbjct: 742 KFPELLPEALAAARHIQGETHRAQVLSALAKKLTPELLPEALAAARHIQHDKYRAQVLSA 801 Query: 505 LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL--LKQLDRQVRDAGL 562 LA+ ++ + L + + + + ++L E L + + + A + Sbjct: 802 LAE-KFPELLPEALAAARHIQSERGRALVLSALAEKLPELLPEALAAARHIQDEYYRALV 860 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 SA + + + A + R + + +A+ E ++ Sbjct: 861 LSALADKFPELLPEALAAARHIQS-----ERGRAHVLSALAEKFP----ELLPEALAAAR 911 Query: 623 EVHIQIHQIESQEAMIEGFGKM 644 + + ++ + A+ E F ++ Sbjct: 912 HIQDEYYRAQVLSALAEKFPEL 933 Score = 42.6 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 80/286 (27%), Gaps = 42/286 (14%) Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRD 458 EL I+D+ R + A+ D+L + L + + +A Sbjct: 617 MPELLPEALAAARQIQDEDDRAHALSALADKLTPELLPEALAAARQIQDEDDRAHALSAL 676 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE-------------L 505 + L+ +L + + R L P +L E L Sbjct: 677 ADKLTPELLPEALAAARHIQDKYDRAQVLSALADKFPELLPEALAAARHIQDKYDRAQVL 736 Query: 506 ADIRYDNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVRDA 560 + + EL + L + + + + ++L E L + + A Sbjct: 737 SALADKFPELLPEALAAARHIQGETHRAQVLSALAKKLTPELLPEALAAARHIQHDKYRA 796 Query: 561 GLWSATTEANIVDVRQGYQQALALYKR------FRLLSRQKEEIE-KQIAQVTAKGEA-- 611 + SA E + + A + L+ + E+ + +A + Sbjct: 797 QVLSALAEKFPELLPEALAAARHIQSERGRALVLSALAEKLPELLPEALAAARHIQDEYY 856 Query: 612 -------------EKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 E ++ + + + A+ E F ++ Sbjct: 857 RALVLSALADKFPELLPEALAAARHIQSERGRAHVLSALAEKFPEL 902 Score = 41.8 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 30/275 (10%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 ++ EL HI+D+ R A+ ++ +L + + Sbjct: 917 YYRAQVLSALAEKFPELLPEALAAARHIQDEYYRAQVLSALAEKFPELLPEALAAARHIQ 976 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP--AILQEQYQEL 505 + + + + + A +L L +L E Sbjct: 977 DEYYRAQVLSALAEKLPAELLPEALAAARHIQSEHFRAHVLSALAEKLPAELLPEALAAA 1036 Query: 506 ADIRYDNNELQ---KLWSFLFSDFVE--------QKYFLPEEIHQRLCERGFGELL---- 550 I+++ + L L E Q + ++ L E+ ELL Sbjct: 1037 RHIQFEEARAKVLSALAEKLPELLPEALAAARHIQSEWDRAQVLSALAEKLPAELLPEAL 1096 Query: 551 ---KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------FRLLSRQKEEIE-K 600 + + + A + SA E + + A + L+ + E+ + Sbjct: 1097 AAARHIQSEWDRAKVLSALAEKLPELLPEALAAARHIQSEWGRAQVLSALAEKLPELLPQ 1156 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + E A +I L + ++ Q+ E Sbjct: 1157 ALTIAQGIKDKESRAQVIVALAD---KLTQMPKTE 1188 >gi|315186482|gb|EFU20242.1| primary replicative DNA helicase [Spirochaeta thermophila DSM 6578] Length = 455 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 18/187 (9%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 P S+ KG + E A L L+ +P L L + + + Sbjct: 2 SSDPVIDRALPSVGKGFVPPHDETAEKATLGALLLNPEALPVVLPYLRPEDFYRRAHRNI 61 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + F + + + L +LLK+ A L S V+ Sbjct: 62 YQAVLDLFDRGEAIDILTVTEELKA---RDLLKESGGAAYIASLTSEVPTTANVEYYARI 118 Query: 579 QQALALYKRFRLLSRQ---------------KEEIEKQIAQVTAKGEAEKTAILISILHE 623 Q ++ +R +++Q EE E+QI ++T G +L E Sbjct: 119 VQDRSIRRRLITVAQQAVADAYDEGKEIRLTIEEAERQIFELTELGTTSTVKHTRELLTE 178 Query: 624 VHIQIHQ 630 I + Sbjct: 179 TINIIER 185 >gi|60682751|ref|YP_212895.1| putative transposon-related/mobilisation protein [Bacteroides fragilis NCTC 9343] gi|60494185|emb|CAH08978.1| putative transposon-related/mobilisation protein [Bacteroides fragilis NCTC 9343] Length = 344 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 27 WDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83 Y PF + TPSF + + F G + + G Sbjct: 15 LKSLGILPAVDKYYYGMYHSPFRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQHGY 74 Query: 84 SFIESVQRL 92 + +++ RL Sbjct: 75 NAYDAICRL 83 >gi|299145439|ref|ZP_07038507.1| DNA primase [Bacteroides sp. 3_1_23] gi|298515930|gb|EFI39811.1| DNA primase [Bacteroides sp. 3_1_23] Length = 322 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LGCSFIESVQ 90 W PF DE+ PSF N + +Y F G+ ++ L ++ ++ Sbjct: 25 RQGDSLWYKSPFRDEQEPSFKVNMERNLWYDFGAGRGGNIIALARELYASDSLPYL--LE 82 Query: 91 RLAAIA 96 R+A A Sbjct: 83 RIAEQA 88 >gi|297627226|ref|YP_003688989.1| Replicative DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922991|emb|CBL57573.1| Replicative DNA helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 451 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 56/173 (32%), Gaps = 12/173 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++L ++ + + +E+ + + ++ + + + + L Sbjct: 25 AEQSVLGAMLMSKDAIADVIEEVRPQDFYRPAHETIYEAIIDLYGRGEPADAVTVAAELD 84 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ- 601 +RG L+++ +V L + + A A +R S + ++ Q Sbjct: 85 KRG---ELERVGGRVGLVDLMQSISIAANAGYYAQIVHDKATLRRLVDASMKIAQLGYQG 141 Query: 602 ------IAQVTAKGEAEKTA-ILISILHEVHIQIH-QIESQEAMIEGFGKMSG 646 I + E + + + I+ EA+ G MSG Sbjct: 142 AGDVPDIVDAAQQTIYEVSEGKTSEDYKSLKELLEPTIDEMEAIESHTGVMSG 194 >gi|281424811|ref|ZP_06255724.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] gi|299142389|ref|ZP_07035521.1| mobilizable transposon protein [Prevotella oris C735] gi|281401181|gb|EFB32012.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] gi|298576111|gb|EFI47985.1| mobilizable transposon protein [Prevotella oris C735] Length = 320 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 9/89 (10%) Query: 11 LLIHIPISNLIGQYVDWDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSC 67 L+ I +++ V+ P +E PSF + K + ++ Sbjct: 8 LIKRYSIVEY------LEKKGIRPVRRTPAYAMYRSPLREETRPSFKVDREKNLWIDYAE 61 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIA 96 G + L GC+ E++ RL A Sbjct: 62 GRGGSIIDLCMRLEGCTLSEAICRLGQNA 90 >gi|311897274|dbj|BAJ29682.1| putative replicative DNA helicase [Kitasatospora setae KM-6054] Length = 956 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 72/224 (32%), Gaps = 26/224 (11%) Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 + G + RD+ G + ++ + E ++L ++ + Sbjct: 76 QRRDGGKGGDRFPGKGERRDRDGDREGGFGGGEGFERVPPQDLAAEQSVLGGMLLSKDAI 135 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 + + L Y + + + + + P + L +RG +L R Sbjct: 136 ADVVEVLKPADYYRPAHELIHGAILDLYARGEPADPITVAGELTKRG------ELARVGG 189 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKGE-AEKTA 615 + L + + Y + + R + R+ E +IA + A+G+ + Sbjct: 190 ASYLHTLVNSVPTAANAEYYAEIVH----ERAVLRRLVEAGTRIAGMGYAAEGDVDDIVN 245 Query: 616 ILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+MSG Sbjct: 246 AAQAEIYAVTEQRTNEDYAPLADIMEGALDEIEAIGSRSGQMSG 289 >gi|213427115|ref|ZP_03359865.1| DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 72 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 18/49 (36%) Query: 87 ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNA 135 E+VQ L G+ + +K L + E A F+H L Sbjct: 20 EAVQILGQRVGIEVEKPLYSEQKPASPHQALYDMHEDAAKFYHAILMTT 68 >gi|302559696|ref|ZP_07312038.1| replicative DNA helicase [Streptomyces griseoflavus Tu4000] gi|302477314|gb|EFL40407.1| replicative DNA helicase [Streptomyces griseoflavus Tu4000] Length = 492 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + +++ + + + + P Sbjct: 55 RVPPQDLEAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETVYTAILDVYAKGEPADP 114 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG ++++ + L + Y + + R + R+ Sbjct: 115 ITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 164 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 165 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 224 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 225 SRSGEMTG 232 >gi|320109232|ref|YP_004184822.1| replicative DNA helicase [Terriglobus saanensis SP1PR4] gi|319927753|gb|ADV84828.1| replicative DNA helicase [Terriglobus saanensis SP1PR4] Length = 463 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 55/161 (34%), Gaps = 14/161 (8%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 +++ E +L ++ P + + +L + + ++++ + Sbjct: 7 ILEKDGLPASLHTERVILGAMLTDPVAVVDATAKLHPEDFSVDSHRRIYIVILELVELGY 66 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + L + K+L+ + L S + Y Q + R Sbjct: 67 AIDAVTVADALKTK------KELEAVGNPSYLASLQEGLPRHLAIENYVQIVKDKSILRN 120 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + E+ + + A+++ + +L+++ ++ +I Sbjct: 121 V---MKVCEEGLNRA-----ADQSEQSLGLLNDLESRLLEI 153 >gi|225017890|ref|ZP_03707082.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum DSM 5476] gi|224949402|gb|EEG30611.1| hypothetical protein CLOSTMETH_01824 [Clostridium methylpentosum DSM 5476] Length = 635 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77 + + K + P H+++ PS + ++ +CF+C D + Sbjct: 18 LQNKGIDLNKP-FRCLNPQHEDRHPSMRFDPARNKAHCFACGADYDIYDLI 67 >gi|298244940|ref|ZP_06968746.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] gi|297552421|gb|EFH86286.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] Length = 385 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 18/91 (19%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN-DSK 59 I++ +IG+YV DR CCPF H + PS + SK Sbjct: 292 TIQEWCAQQDALGVIGRYVALDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSK 343 Query: 60 ---GFYYCFSCHVKGDHLSFLSALLGCSFIE 87 +YC + G FL G E Sbjct: 344 PGGACWYCHTWKQGGSVFDFLRLYYGLEARE 374 >gi|307565777|ref|ZP_07628245.1| conserved domain protein [Prevotella amnii CRIS 21A-A] gi|307345516|gb|EFN90885.1| conserved domain protein [Prevotella amnii CRIS 21A-A] Length = 167 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 10/119 (8%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + + + PI + + Y P +E PSF + K Sbjct: 1 MK--EEDLSLIK-RYPIVEYFERK-GIKPVRRTPSYALYR--SPLREETHPSFKVDTQKN 54 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA----IAGVPLPVVDPKIEKKEKIQT 115 + + G + L GC+ E ++ L I VP K+E I+ Sbjct: 55 LWIDYVEGRGGSIIDLCMRLEGCTLSEVIRILGQNSPDITHVPRRESVQGTSKQESIRQ 113 >gi|307718996|ref|YP_003874528.1| hypothetical protein STHERM_c13140 [Spirochaeta thermophila DSM 6192] gi|306532721|gb|ADN02255.1| hypothetical protein STHERM_c13140 [Spirochaeta thermophila DSM 6192] Length = 455 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 58/187 (31%), Gaps = 18/187 (9%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 P S KG + E A L L+ +P L L + + + Sbjct: 2 SSDPVIDRALPSTGKGFVPPHDEAAEKATLGALLLNPETLPVVLPYLRPEDFYRRAHRNI 61 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + F + + + L +LLK+ A L S V+ Sbjct: 62 YQAVLDLFDRGEAIDILTVTEELKA---RDLLKESGGAAYIASLTSEVPTTANVEYYARI 118 Query: 579 QQALALYKRFRLLSRQ---------------KEEIEKQIAQVTAKGEAEKTAILISILHE 623 Q ++ +R +++Q EE E+QI ++T G +L E Sbjct: 119 VQDRSIRRRLITVAQQAVADAYDEGKEIRLTIEEAERQIFELTELGTTSTVKHTRELLTE 178 Query: 624 VHIQIHQ 630 I + Sbjct: 179 TINIIER 185 >gi|227487716|ref|ZP_03918032.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541422|ref|ZP_03971471.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092337|gb|EEI27649.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182810|gb|EEI63782.1| replicative DNA helicase [Corynebacterium glucuronolyticum ATCC 51866] Length = 487 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 67/191 (35%), Gaps = 25/191 (13%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + ++ + + G+L E +L +++ P +L + + L + + Sbjct: 16 PSEPPAAEDMPAPAFEAGRLPPHDIEAEQGVLGAILSSPYVLTDVLEVLKPDDFYRPMHR 75 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEAN 570 ++S + F E + + R L G L L V A +A AN Sbjct: 76 IIYSTIIDLFSENQEIDSLILASRLERDNNLERAGGAPYLHTLVHSVPTAA--NARYYAN 133 Query: 571 IVDVRQGYQQALALYKRFRLL----------SRQKEEIEKQIAQVTAKGEAEKTAIL--- 617 IV + ++Q +A R L + + ++ + +V +G E IL Sbjct: 134 IVAEKATFRQLVAAGTRVVQLGHQSESGIDADQAVDLAQQAVFEVQREGAQEDYQILADL 193 Query: 618 ----ISILHEV 624 + L E+ Sbjct: 194 LGPTMEELDEI 204 >gi|160286059|pdb|2R6A|C Chain C, Crystal Form Bh1 gi|190016191|pdb|2R6C|G Chain G, Crystal Form Bh2 gi|190016192|pdb|2R6C|H Chain H, Crystal Form Bh2 gi|190016193|pdb|2R6C|I Chain I, Crystal Form Bh2 Length = 143 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 50/154 (32%), Gaps = 14/154 (9%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E LL + + + R++ E + L +++++ + E P Sbjct: 1 KLLPAFQNAERLLLAHXXRSRDVALVVQERIGG-RFNIEEHRALAAYIYAFYEEGHEADP 59 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + R+ +L + L + + ++ + L R + L + Sbjct: 60 GALISRIPG--------ELQPLASELSLLLIADDVSEQELEDYIRHVLN---RPKWLXLK 108 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 +E EK + + + A + E + Sbjct: 109 VKEQEK--TEAERRKDFLTAARIAKEXIEXKKXL 140 >gi|212693495|ref|ZP_03301623.1| hypothetical protein BACDOR_03012 [Bacteroides dorei DSM 17855] gi|237726791|ref|ZP_04557272.1| conserved hypothetical protein [Bacteroides sp. D4] gi|254883937|ref|ZP_05256647.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641429|ref|ZP_07996121.1| DNA primase [Bacteroides sp. 3_1_40A] gi|212663934|gb|EEB24508.1| hypothetical protein BACDOR_03012 [Bacteroides dorei DSM 17855] gi|229435317|gb|EEO45394.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|254836730|gb|EET17039.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386948|gb|EFV67835.1| DNA primase [Bacteroides sp. 3_1_40A] Length = 302 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 PF +E+TPSF N + F G + L C F +++R+ Sbjct: 34 SPFRNEETPSFMVNLHTNKWKDFGEDSSGGVADLVMRLERCDFHSAMRRI 83 >gi|265755633|ref|ZP_06090254.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263234239|gb|EEZ19832.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 302 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 PF +E+TPSF N + F G + L C F +++R+ Sbjct: 34 SPFRNEETPSFMVNLHTNKWKDFGEDSSGGVADLVMRLERCDFHSAMRRI 83 >gi|307154014|ref|YP_003889398.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7822] gi|306984242|gb|ADN16123.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7822] Length = 872 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 76/203 (37%), Gaps = 6/203 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++ + +++ + ++ + + AL+ + Sbjct: 321 YRKYIEKDAALERRFQSVYVDEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAVLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLCERGFGELLKQ 552 + +++ I + KL + S E + + +RL + + L + Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEDDPLSR 440 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + L E + + +Q L + R + ++ E++ +I Q + Sbjct: 441 ERLGRLEKELADLKEEQTQYNAQ--WQAEKELIDKLRTVKKEIEQVNVEIQQAERDYDYN 498 Query: 613 KTAIL-ISILHEVHIQIHQIESQ 634 K A L L ++ QI ++ESQ Sbjct: 499 KAAELRYGKLTDLQRQIKELESQ 521 >gi|255657764|ref|ZP_05403173.1| DNA primase catalytic core domain protein [Mitsuokella multacida DSM 20544] gi|260849954|gb|EEX69961.1| DNA primase catalytic core domain protein [Mitsuokella multacida DSM 20544] Length = 596 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 25/237 (10%) Query: 199 YDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI-LFHKGKNLYNFFGALNY 257 Y L P+R G+ +AF R KY NS LF KG+ LY + Sbjct: 66 YSTKNQVLSIPMRDEFGRCVAFLYR--HFDGGAKYKNSKNVPGLFVKGEFLYGINETIKN 123 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ---AGVQNVVSSLGTALTEYQLRLLWKLS 314 L+ ++ I+L EG +D S Q + S+ + + +L + Sbjct: 124 LR----------NTKSIVLCEGSLDAASATQQGLCCMAYCGISITRSHADKVTEILRPIK 173 Query: 315 P-RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 +++L D D + +A ++ + V+ +D + + Sbjct: 174 GGKVILVPDNDGKASKFVLRAREIFRKYHPQTVVKVAVIPDGNKDLNDMLVNG------- 226 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 + + + E + + + + +R ++ + Sbjct: 227 -LDIAENCTYESLDYYCAKEVIKGESDPEVQEKLIVEYMKSVSNPVVRADIAEYLAK 282 >gi|86143476|ref|ZP_01061861.1| DNA primase [Leeuwenhoekiella blandensis MED217] gi|85829923|gb|EAQ48384.1| DNA primase [Leeuwenhoekiella blandensis MED217] Length = 284 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 N K ++ P E SF + S +Y G+ + + L + E++ Sbjct: 29 RNTEKEAWF-LSPLRSETQASFKVSKSLNCWYDHGLGKGGNCIDLICELQNIAVREALAI 87 Query: 92 LAA 94 LA Sbjct: 88 LAQ 90 >gi|282851791|ref|ZP_06261154.1| hypothetical protein HMPREF9209_0806 [Lactobacillus gasseri 224-1] gi|282557033|gb|EFB62632.1| hypothetical protein HMPREF9209_0806 [Lactobacillus gasseri 224-1] Length = 37 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 8/29 (27%), Positives = 16/29 (55%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRR 30 P FI ++ + I ++I QYV +++ Sbjct: 5 RIPEQFIDEVRNSVDIVDVISQYVSLEKK 33 >gi|331019567|gb|EGH99623.1| hypothetical protein PLA106_26312 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 966 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65 + I ++ V W G +Y A P +K S + SKG + F Sbjct: 14 QVKAAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70 Query: 66 SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 + GD + + + G + +E+ +LA + GV Sbjct: 71 ATGDKGGDLIDLVRYIDGGTDVEACNKLAELLGVT 105 >gi|330941277|gb|EGH44138.1| hypothetical protein PSYPI_17797 [Pseudomonas syringae pv. pisi str. 1704B] Length = 656 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65 + I ++ V W G +Y A P +K S + SKG + F Sbjct: 14 QVKAAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70 Query: 66 SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 + GD + + + G + +E+ +LA + GV Sbjct: 71 ATGDKGGDLIDLVRYIDGGTDVEACNKLAELLGVT 105 >gi|323142810|ref|ZP_08077523.1| toprim domain [Succinatimonas hippei YIT 12066] gi|322417455|gb|EFY08076.1| toprim domain [Succinatimonas hippei YIT 12066] Length = 643 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 5/59 (8%) Query: 27 WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 + N + P H + PS N +CFSC+ D + G F Sbjct: 21 LRNKGININAP-FHCLNPNHHDIHPSMSYNHQNQTVHCFSCNATYDIFGII----GLDF 74 >gi|237722689|ref|ZP_04553170.1| DNA primase [Bacteroides sp. 2_2_4] gi|229448499|gb|EEO54290.1| DNA primase [Bacteroides sp. 2_2_4] Length = 295 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 21/42 (50%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 NA YW P +E+TPSF ND+ +Y F GD + Sbjct: 24 NARGCQYWYLSPLREERTPSFKVNDNLNEWYDFGLSAGGDII 65 >gi|224369709|ref|YP_002603873.1| DnaG8 [Desulfobacterium autotrophicum HRM2] gi|224371055|ref|YP_002605219.1| DnaG11 [Desulfobacterium autotrophicum HRM2] gi|224371690|ref|YP_002605854.1| DnaG6 [Desulfobacterium autotrophicum HRM2] gi|223692426|gb|ACN15709.1| DnaG8 [Desulfobacterium autotrophicum HRM2] gi|223693772|gb|ACN17055.1| DnaG11 [Desulfobacterium autotrophicum HRM2] gi|223694407|gb|ACN17690.1| DnaG6 [Desulfobacterium autotrophicum HRM2] Length = 123 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFH--CNDSK 59 + + +L IP+ LI + ++ + +G + CP +E F N + Sbjct: 4 KFSSQELFELRNFIPVEMLIREQLEM---PSKISEGFFRFLCPICNE----FQTAINPAT 56 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK 109 CF C + + + + F ESV L + G +P + + Sbjct: 57 NLARCFRCERNFNTIDLVMTVQRIGFKESVLFLKRLMG-KVPDQNKDARQ 105 >gi|296446075|ref|ZP_06888024.1| zinc finger CHC2-family protein [Methylosinus trichosporium OB3b] gi|296256434|gb|EFH03512.1| zinc finger CHC2-family protein [Methylosinus trichosporium OB3b] Length = 384 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 18/107 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDE-KTP-SFHCND 57 M I D+ + + L + ++ CP ++ F Sbjct: 1 MRLNDAQIADVKARVDLGALARELGAGLRKQGRKL-----IGSCPICGGGRSAQRFEV-Q 54 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL--------AAIA 96 G + C C GD + L GC F +V+RL A A Sbjct: 55 GDG-WVCAVCQDGGDAIRLLQRATGCDFRAAVERLGGARELSDAERA 100 >gi|304383200|ref|ZP_07365673.1| DNA primase [Prevotella marshii DSM 16973] gi|304335671|gb|EFM01928.1| DNA primase [Prevotella marshii DSM 16973] Length = 309 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+++ I + + + ++ ++ W PF E SF N + +Y F Sbjct: 3 IQEIKT-IKLQDFLASLGHIPIKQQGNKL-----WYLSPFRTEHHASFKVNTNLNQWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GIGKGGNII 65 >gi|256833727|ref|YP_003162454.1| replicative DNA helicase [Jonesia denitrificans DSM 20603] gi|256687258|gb|ACV10151.1| replicative DNA helicase [Jonesia denitrificans DSM 20603] Length = 457 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 55/178 (30%), Gaps = 15/178 (8%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + + + + + E ++L ++ + + + + + + Sbjct: 5 AAEATYPPSEGPTRARDRTPPQDIAAEQSVLGGMLISKDAIADVIAHIKGVDFYRPAHEA 64 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 ++ + + + + L +RG L ++ L ++ A Sbjct: 65 IFDAVIDLYGHGEPADAITVVAELNKRGS---LDRIGGAPYIHDLIASVPTAAN------ 115 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----TAILISILHEV-HIQIHQ 630 A R R + R+ E +I Q+ + ++ + ++ + ++ + Sbjct: 116 -AGYYAKIVRERAIMRRLVEAGTRIVQLGYATDGDEVDDVVNNAQAEIYNITENRLSE 172 >gi|198284523|ref|YP_002220844.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665389|ref|YP_002427189.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249044|gb|ACH84637.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517602|gb|ACK78188.1| replicative DNA helicase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 457 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 55/168 (32%), Gaps = 14/168 (8%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E +++ L+ P ++ + + + ++++ + + + Sbjct: 12 KAPPHSIEAEQSVIGALLIDPETAEQVTEAVTAEDFYERRHRQIFQAISAMLGAGRAVDA 71 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + E L + L + T A V + A + + R+ Sbjct: 72 ITVSEWLQDH---EQLADVGGVQYLLMLANETPSAANVLAYARIVRERATLRDLIRVGRE 128 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMIEGF 641 E+ +G ++L E ++ + E Q+ EGF Sbjct: 129 IAEL-----AYRPEG-----RQAQALLDEAESRVFHLAEGQQRAGEGF 166 >gi|255011573|ref|ZP_05283699.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313149401|ref|ZP_07811594.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313138168|gb|EFR55528.1| DNA primase [Bacteroides fragilis 3_1_12] Length = 321 Score = 55.7 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 15/101 (14%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E SF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106 G+ ++ L F +S+ L + P Sbjct: 57 GAGKGGNIIALAKELY---FSDSLPYLLKR----IEEQTPN 90 >gi|197105006|ref|YP_002130383.1| replicative DNA helicase [Phenylobacterium zucineum HLK1] gi|196478426|gb|ACG77954.1| replicative DNA helicase [Phenylobacterium zucineum HLK1] Length = 496 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 63/180 (35%), Gaps = 18/180 (10%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S+ + E ALL L+ A + L + Q+L++ + + + Sbjct: 13 SNDAAIPHAPANIEAEQALLGALLYDNAAFERLGDNLQARHFFEPFHQRLYAAIETHIRK 72 Query: 529 QKYFLPEEIHQRL-CERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + P + ++ + F EL ++ L V A + + Y +A+ Sbjct: 73 GQLAEPILLAEQFARDPAFEELGGVRYLADLVERAPPAANAPD---------YARAIYDL 123 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 L R I IA G+AE A + + Q++Q+ + +GF S Sbjct: 124 ----ALRRDLIRIGGDIAAQAQAGDAELDAR--EQIEQAEQQLYQLAETGGVSQGFVPFS 177 >gi|288800241|ref|ZP_06405699.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332454|gb|EFC70934.1| mobilizable transposon, excision protein [Prevotella sp. oral taxon 299 str. F0039] Length = 310 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 27 WDRRKTNAVKGDY---WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83 +R+ V+ P +E PSF + K + ++ G + + GC Sbjct: 4 LERKGIRPVRKTPTYAMYRSPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLCMRMEGC 63 Query: 84 SFIESVQRLAAIA 96 + E+++ L A Sbjct: 64 TLSEAIRCLGQNA 76 >gi|212693489|ref|ZP_03301617.1| hypothetical protein BACDOR_03006 [Bacteroides dorei DSM 17855] gi|212664002|gb|EEB24576.1| hypothetical protein BACDOR_03006 [Bacteroides dorei DSM 17855] Length = 290 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ IPI++ + + + R+ ++W P+ +E+TPSF N K + F Sbjct: 3 IEETR-RIPITDFLARMGHEPTSRKGN-----EWWYSAPYREERTPSFRVNILKNVWQDF 56 Query: 66 SCHVKGDHLSFLSALLGCS-FIE 87 GD S G S F E Sbjct: 57 GIGRGGDIFSLAGEFTGSSDFKE 79 >gi|313677590|ref|YP_004055586.1| DNA primase [Marivirga tractuosa DSM 4126] gi|312944288|gb|ADR23478.1| DNA primase [Marivirga tractuosa DSM 4126] Length = 323 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 74/272 (27%), Gaps = 21/272 (7%) Query: 27 WDRRKTNAV---KGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC 83 + + + + P +E TPSF + K + G + + L Sbjct: 46 LKNKGIDPAEKLRNRFRYYSPIRNENTPSFDVSLEKNVWIDRGTGEGGTLVDLCTRLENL 105 Query: 84 SFIESVQRLAA------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARD 137 S E V++ + P +D K + L + D+ + + Sbjct: 106 SVSEVVKKFNNDSFSFHQLNIAKPKIDKTSSFKILSKELLKE--KRLCDYLEE--RAIKL 161 Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 ++E ++ F +G +++ + + + + + + Sbjct: 162 PVAKRMVNEYHYSLNSRNYFGIGI-----DNVKGGVELRNKYFKGTLGPKAISYFKGNNN 216 Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257 F + S + + + L + E +L F + Sbjct: 217 KILVFEGFIDLLSHFSYSKKEQTSSHIIILNSTNNTLAAKEQVLQLPKNMEVFLFLDRDE 276 Query: 258 LQKSIRKDVRRNSS---SFIILVEGYMDVLSL 286 K + + + +GY D + Sbjct: 277 AGKRSGQVFQNLDRKIFDMSYIYKGYNDYNVM 308 >gi|326383845|ref|ZP_08205529.1| replicative DNA helicase [Gordonia neofelifaecis NRRL B-59395] gi|326197304|gb|EGD54494.1| replicative DNA helicase [Gordonia neofelifaecis NRRL B-59395] Length = 737 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 53/174 (30%), Gaps = 15/174 (8%) Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + P + G+ + E ++L ++ + + + + + Q ++ Sbjct: 9 REPDLPPEPPTEEFGRQPPQDQQAEQSVLGGMMLSKDAIADVLERIRPGDFYKPAHQAVY 68 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + + L +G +L + L + + Y Sbjct: 69 DAILELYGRGEPADAVTVAAELERKG------ELRKVGGAPYLHTLISTVPTAANAGYYA 122 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + + + + R+ E +I Q + AE + ++EV + Sbjct: 123 EIVG----EKSILRRLVEAGTRIVQYGYAGADGQDVAEVVDRAQAEIYEVTERR 172 >gi|239942702|ref|ZP_04694639.1| putative replicative DNA helicase [Streptomyces roseosporus NRRL 15998] gi|239989161|ref|ZP_04709825.1| putative replicative DNA helicase [Streptomyces roseosporus NRRL 11379] gi|291446168|ref|ZP_06585558.1| replicative DNA helicase [Streptomyces roseosporus NRRL 15998] gi|291349115|gb|EFE76019.1| replicative DNA helicase [Streptomyces roseosporus NRRL 15998] Length = 491 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 26/223 (11%) Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 S R +K R +G + + ++ + E ++L ++ + Sbjct: 19 RLPVSRQRRGDRKGREDRHDRGSDEAWDSGAPSFERVPPQDVDAEQSVLGGMLLSKDAIA 78 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 E + + + + +++ + + + + P + L +RG ++ + Sbjct: 79 EVVEVIKGHDFYRPAHETVFTAILDLYAKGEPADPITVAAELVKRG------EITKVGGA 132 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAI 616 L + Y + + R + R+ E +I Q+ + E Sbjct: 133 PYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIVNS 188 Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231 >gi|332653218|ref|ZP_08418963.1| toprim domain protein [Ruminococcaceae bacterium D16] gi|332518364|gb|EGJ47967.1| toprim domain protein [Ruminococcaceae bacterium D16] Length = 310 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 5/119 (4%) Query: 68 HVKGDHLSFLSALLGCSFIESVQRL---AAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122 + GD ++FL SF E+V+ L A PV P+ K+++ + L Sbjct: 63 GIGGDAITFLQRFYNKSFPEAVEYLLTWHGRARDSPPVSTPRQTKEKEEKVPFTLPPANV 122 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 F + K ++ E G+ + + + Q+G + Sbjct: 123 DYRRVFAYLRKRGIAPQVIRGFVEAGLLYEDAQHHNCVFVGRDQSGAPVFANQRGTYDW 181 >gi|325264189|ref|ZP_08130921.1| toprim domain protein [Clostridium sp. D5] gi|324030673|gb|EGB91956.1| toprim domain protein [Clostridium sp. D5] Length = 327 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 7/122 (5%) Query: 46 HDEKTPSFHCNDSKGFYYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104 HD S ++ K + +S + G L +L + G SF+E+V+ +A A + PV Sbjct: 45 HD----SLKISNGKWMW--WSRGIGGRSALDYLIKVEGYSFMEAVEIIAGQAAITPPVYV 98 Query: 105 PKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD 164 P+ E++ K + L L + + L D+ + + G + + Sbjct: 99 PQKEEQRKKKLLLPELSQYPEQVIQYLLNRGIDREIIDFCINTGRICETRQYHNAVFIGK 158 Query: 165 SR 166 Sbjct: 159 DS 160 >gi|160943745|ref|ZP_02090976.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii M21/2] gi|158444919|gb|EDP21922.1| hypothetical protein FAEPRAM212_01240 [Faecalibacterium prausnitzii M21/2] Length = 633 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + GQ R HD S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQGQGEQLTRAGNEYRWKR-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +Y S G + F+ G SF E+V+ L Sbjct: 49 --WYRHSQSKGGTPIDFVMEFYGKSFTEAVEML 79 >gi|300859447|ref|YP_003784430.1| replicative DNA helicase [Corynebacterium pseudotuberculosis FRC41] gi|300686901|gb|ADK29823.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis FRC41] gi|302207126|gb|ADL11468.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis C231] gi|302331686|gb|ADL21880.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis 1002] gi|308277379|gb|ADO27278.1| Replicative DNA helicase [Corynebacterium pseudotuberculosis I19] Length = 492 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 27/197 (13%), Positives = 58/197 (29%), Gaps = 21/197 (10%) Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 Y + + +R S + + E +L ++ P + E + L Sbjct: 29 YAPRTPNREGRSYSPRRQESSPTSEFRQPPHDVEAEQGVLGAMLLSPQTVIEIVEVLTPE 88 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVR 558 + Q ++S + F + K P + RL L+ + Sbjct: 89 DFYRPAHQLIYSAMIDLFSDNKEIDPVIVAARLDRNNDLERVGGAPYLHTLISSVPTAAN 148 Query: 559 DAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 E ++ D Q + + ++++ +V KG AE Sbjct: 149 ARYYAEIVAEKALLRQLVDAGTRVVQLGYEGTEGAEIESVIDLAQQEVFKVNKKGSAEDY 208 Query: 615 AIL-------ISILHEV 624 A+L + L ++ Sbjct: 209 AVLGDIIGPTMEELDDI 225 >gi|330901330|gb|EGH32749.1| hypothetical protein PSYJA_28831 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 819 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65 + I ++ V W G +Y A P +K S + SKG + F Sbjct: 14 QVKSAALRNIDKVL---VQWLPNGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDF 70 Query: 66 SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 + GD + + + G + +E+ +LA + GV Sbjct: 71 ATGDKGGDLIDLVRYIDGGTDVEACNKLADLLGVT 105 >gi|299830337|ref|YP_003734552.1| DNA replication helicase [Kryptoperidinium foliaceum] gi|297385039|gb|ADI40337.1| DNA replication helicase [Kryptoperidinium foliaceum] Length = 461 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 52/176 (29%), Gaps = 19/176 (10%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S + L E +L LI + L+ Q L + QKL+ L Sbjct: 7 TSSKTLIQNSLPHNFLAEKQILSCLIRNGETLELVKQNLIVEAFYFKNHQKLYQSLLDME 66 Query: 527 VEQKYFLPEEIHQRLCERGFGEL---LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + L RG +K L V + +S TE + + ++ L Sbjct: 67 ENNFPIDILTVAGFLQNRGIISKIGGIKVLLDLVNQSITFSYLTEYIQIVKEKFLKRCLI 126 Query: 584 ----------------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 L + R+ ++ +I V A+ L + L E Sbjct: 127 KFGYKVIHSGYITSGSLETNLTKMERELFQLTNEIRTVPTANTAQVLNDLFAELKE 182 >gi|239930207|ref|ZP_04687160.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291438552|ref|ZP_06577942.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672] gi|291341447|gb|EFE68403.1| replicative DNA helicase [Streptomyces ghanaensis ATCC 14672] Length = 491 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 64/188 (34%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + +++ + + + + P Sbjct: 54 RMPPQDLEAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETVYTAILDVYAKGEPADP 113 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG ++++ + L + Y + + R + R+ Sbjct: 114 ITIASELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ERAVLRR 163 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 164 LVEAGTRITQMGYAADDDVDEIVNRAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIG 223 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 224 SRSGEMTG 231 >gi|268796567|ref|YP_003310962.1| DnaB domain protein helicase [Sebaldella termitidis ATCC 33386] gi|268616665|gb|ACZ11031.1| DnaB domain protein helicase domain protein [Sebaldella termitidis ATCC 33386] Length = 673 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 68/563 (12%), Positives = 154/563 (27%), Gaps = 66/563 (11%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA---GVPLPVVDPKIE 108 SF N + CFS G+ + L L S E++ L + + E Sbjct: 52 SFSINTKTNLFKCFSTGKTGNIYNLLLELKH-SHDEAIDLLNEFLEQKNIQIKKSGQSDE 110 Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 + + + + ++ + Sbjct: 111 RGSPEEESKKD----------------------NEGIPVKMSFKPLYDEGAREISKNKKN 148 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 L +EK + +Y + + + + Sbjct: 149 LFTSRGISREVQEKYKLGYISKGFKEIVKAYKNQYGEKSPFAEKASKNLDNYKY-LIPVS 207 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + +L S + + K L + K + + I + EG D LSL + Sbjct: 208 DDYFFLRSDNSDVKPKEHKLTGY------ASKLFNERYLNMKNEIIFICEGIFDSLSLEE 261 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 G + S+ Q +L+ +L + + D+ A L V Sbjct: 262 LGYK----SISLGGVTNQNKLIERLHEKNIFVLAFDNDDSGKAATKSLLEKIQSKGQISV 317 Query: 349 NFVLLSRGEDPDSFIRCYGK----------TAFEKLIVESLPLVDMLWKRETENRSFNTP 398 F + +D + ++ K + + + +++ E + T Sbjct: 318 IFEFDEKYKDINEYLIADRKGLENKLSEFINSLDDYTEKLKKPDLTIYRLEEYLKELETN 377 Query: 399 DERAELEIHLKNCINHIKDQKLRYYY-SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 E+ ++ + +++ Y A+ + F +T+ Y Sbjct: 378 KEKPAIKTNFGPLDDYLSGGLHTGLYVIGAVSSLGKTTFVNQLTDDIAKNGYDVLFFSLE 437 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + S + K K A I ++ +AD EL Sbjct: 438 MGRNEIISKSLSREMFRKAKDKSLPLSAL---------EIQNLRFHGIADQMKKQKEL-- 486 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 L + K+ + E GF + ++ ++ + + T ++D Q Sbjct: 487 LREAIKEYGNSAKHVS-------IIEGGFDTGVNEIKEKIENYISMNETKPIVVIDYLQI 539 Query: 578 YQQALALYKRFRLLSRQKEEIEK 600 +Q+ + + + +++K Sbjct: 540 LKQSSNFFSDKQAVDHNITQLKK 562 >gi|300780224|ref|ZP_07090080.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC 33030] gi|300534334|gb|EFK55393.1| replicative DNA helicase DnaB [Corynebacterium genitalium ATCC 33030] Length = 490 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 R + G + L + + E ++ ++ P + + +EL + + Sbjct: 31 GYRSNRRNGRGFTSEREDLSEYRQPPHDRKAEQGVIGAMLLSPNTVTDVIEELREEDFYF 90 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 Q ++ + + + + RL G QL+R L + +E Sbjct: 91 PAHQLIYQAILDLYSQGSQIDVLIVSGRLDRMG------QLERAGGAPYLHTLISEVPTS 144 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI--SILHEV 624 + Y +A + RQ + ++AQ+ G + E+ Sbjct: 145 ANARYYADIVA----EKSTLRQLVDAGTRVAQLGYDGGEGMEIEALVDRAQQEI 194 >gi|291297673|ref|YP_003508951.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728] gi|290566893|gb|ADD39858.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728] Length = 474 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 22/220 (10%), Positives = 60/220 (27%), Gaps = 28/220 (12%) Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 R + + + + E ++L ++ + + + L Sbjct: 7 ANRKGGAQQSRAGDYPDEPPPEEGGHEFERTPPQDVMAERSVLGGMLLSKDAIADVVEIL 66 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDR 555 + ++ + + + + L + G L+ + Sbjct: 67 KTNDFYKPAHATIFDVICDKYARGEPADAVTMVAALNDLGELGKVGGAPYLHTLISSVPT 126 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTA 607 A +E R ++ + R L R +++ Q Sbjct: 127 AANAAYYARIVSE------RAILRRLIEAGTRIVQLGYGTAAGGGRDVDDLVDLAQQAVY 180 Query: 608 KGEAEKTAILISILHEVHIQIH-QIESQEAMIEGFGKMSG 646 + + ++L E+ + ++ EA+ E G M+G Sbjct: 181 DVTERRVSEDFAVLSEL---LQPTLDEIEAVGESAGAMTG 217 >gi|241664693|ref|YP_002983053.1| hypothetical protein Rpic12D_3114 [Ralstonia pickettii 12D] gi|240866720|gb|ACS64381.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 933 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 52/413 (12%), Positives = 117/413 (28%), Gaps = 53/413 (12%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M D+ L I + +L + +D R N P H + +PS KG Sbjct: 9 MR---DWFDQLKGGIDLHDL-AERLDLRRTAANGNYH-----SPHHADSSPSLSIF-EKG 58 Query: 61 F-YYCFSCHVKGDHLSFLS----ALLGCSFIESVQRLAAIAGV--PLPVVDPKIEKKEKI 113 + +S V G + + + + +E+ + L G+ P+P +K Sbjct: 59 RAWKDWSQDVGGSCIDLVLHCRPEVE--TPLEAAKLLGEWYGIPAPVPAQSSLPARKSTE 116 Query: 114 QTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS-RYSLREH 172 ++ + + + Y ++ + + G + S + Sbjct: 117 ------------EYIAERCRANPEPAVAYLASRGIAEAVSRRAIQTGALGWNTWNSNKVP 164 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR------GQVIAFGGRTLS 226 + G R+ + + ++ G R L Sbjct: 165 AGEPGHGGPAAAFVVRAAASAAVVAVDLRYADATLNGNVKTQCQGEKLGHGWTSDWRRLQ 224 Query: 227 KGESVKYLNSPETILFHKGKNLY--NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 + +V + SP L + +L A+ + D +++ + D + Sbjct: 225 RARTVYIVESPINALSVECCHLPEGCAAFAIRGTANVDKIDWSFLRDKRVLIALDHTDAV 284 Query: 285 -----------SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 + + + +G+ L + Q + ++ D+ +R + Sbjct: 285 NERTGQRPGLAAAWKLSEVLTAAGIGSVLVDMQDWEEGEDINDVLKARGADELTVRMKHI 344 Query: 334 AIDLVLCHLIPGNRVN--FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384 L+ G R + D + R K F + + D Sbjct: 345 EPWLIPGMPGDGERQKGTRRIFLPAHDFSVYWRFRVKEDFTHYVQKYKDQEDD 397 >gi|282721335|gb|ADA83784.1| gp60 [Mycobacterium phage SkiPole] Length = 171 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 24/52 (46%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 C H+E PS + + C +C +G+ ++ L ++ +V+R+ Sbjct: 32 CLCWAHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVERV 83 >gi|302552662|ref|ZP_07305004.1| replicative DNA helicase [Streptomyces viridochromogenes DSM 40736] gi|302470280|gb|EFL33373.1| replicative DNA helicase [Streptomyces viridochromogenes DSM 40736] Length = 492 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 24/193 (12%), Positives = 64/193 (33%), Gaps = 26/193 (13%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 S ++ + E ++L ++ + + + L + + ++ + + + Sbjct: 50 SPAFERVPPQDIDAEQSVLGGMLLSKDAIADVVEILKGHDFYKPAHETIYQAVLDVYAKG 109 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + P I L +RG ++++ + L + Y + + R Sbjct: 110 EPADPITIAAELTKRG------EINKVGGASYLHTLVQTVPTAANAAYYAEIVH----ER 159 Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633 + R+ E +I Q+ + E + ++ V Q ++ Sbjct: 160 AVLRRLVEAGTRITQMGYAADDDVDEIVNRAQAEVYAVTEQRTSEDYLPLGDIMEGALDE 219 Query: 634 QEAMIEGFGKMSG 646 EA+ G+M+G Sbjct: 220 IEAIGSRSGEMTG 232 >gi|119718874|ref|YP_925839.1| DnaB domain-containing protein [Nocardioides sp. JS614] gi|119539535|gb|ABL84152.1| DnaB domain protein helicase, C-terminal domain protein [Nocardioides sp. JS614] Length = 824 Score = 55.3 bits (131), Expect = 3e-05, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 60/195 (30%), Gaps = 13/195 (6%) Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 +TE G D + + + + E ++L +++ + Sbjct: 2 SVTEQGPRGLPEPPIDDWGDGPAAYAPGERPTSPGDRTPPQDMAAEQSVLGSMLISKDAI 61 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 + + L + + + + + + + + L RG +L R Sbjct: 62 ADVAEVLRGVDFYRPSHETIHDAIIDLYGRGEPVDMVTVAAELQRRG------ELQRIGG 115 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTA 615 L + + I Y + + R + + R+ + +I Q+ GE + Sbjct: 116 APYLHTLSANVPIAANAGYYAEIV----REKAILRRLVDAGTKIVQIGYAGEGQVDDIVD 171 Query: 616 ILISILHEVHIQIHQ 630 + ++++ + Sbjct: 172 TAQAEVYKITDRRAA 186 >gi|312115501|ref|YP_004013097.1| hypothetical protein Rvan_2789 [Rhodomicrobium vannielii ATCC 17100] gi|311220630|gb|ADP71998.1| protein of unknown function DUF927 [Rhodomicrobium vannielii ATCC 17100] Length = 1019 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 20/124 (16%) Query: 23 QYVDWDRRKTNAVKGDYWAC------------CPF--HDEKTPSFHCNDSKGFYYCFSCH 68 + V D + CPF HD+K PS+ + K ++C C Sbjct: 36 ESVKADLAGRELDILRWIGIAWPPARRQTHIHCPFPGHDDKNPSWRWDTRKKAWFCSQCG 95 Query: 69 VKGDHLSFLSALLGCSFIESV-----QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 GD L + + G SF +++ + L P P + +++ ++ Sbjct: 96 -GGDILHAVERMKGLSFQKALDLIETELLGRAYEAPKPERKTRRISQQQPAERALQNRAE 154 Query: 124 ATDF 127 A F Sbjct: 155 AEAF 158 >gi|312113828|ref|YP_004011424.1| hypothetical protein Rvan_1051 [Rhodomicrobium vannielii ATCC 17100] gi|311218957|gb|ADP70325.1| protein of unknown function DUF927 [Rhodomicrobium vannielii ATCC 17100] Length = 1019 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 20/124 (16%) Query: 23 QYVDWDRRKTNAVKGDYWAC------------CPF--HDEKTPSFHCNDSKGFYYCFSCH 68 + V D + CPF HD+K PS+ + K ++C C Sbjct: 36 ESVKADLAGRELDILRWIGIAWPPARRQTHIHCPFPGHDDKNPSWRWDTRKKAWFCSQCG 95 Query: 69 VKGDHLSFLSALLGCSFIESV-----QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 GD L + + G SF +++ + L P P + +++ ++ Sbjct: 96 -GGDILHAVERMKGLSFQKALDLIETELLGRAYEAPKPERKTRRISQQQPAERALQNRAE 154 Query: 124 ATDF 127 A F Sbjct: 155 AEAF 158 >gi|253573108|ref|ZP_04850498.1| DNA primase [Bacteroides sp. 1_1_6] gi|256842097|ref|ZP_05547602.1| DNA primase [Parabacteroides sp. D13] gi|251837302|gb|EES65403.1| DNA primase [Bacteroides sp. 1_1_6] gi|256736413|gb|EEU49742.1| DNA primase [Parabacteroides sp. D13] Length = 321 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNLI 65 >gi|301308737|ref|ZP_07214689.1| DNA primase [Bacteroides sp. 20_3] gi|300833261|gb|EFK63879.1| DNA primase [Bacteroides sp. 20_3] Length = 321 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + Y ++ W P +E PSF N + +Y F Sbjct: 3 IEDVKQ-IPIADYLHSLGYSPVKQQGNGL-----WYKSPLREEHEPSFKVNTDRNLWYDF 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GAGKGGNLI 65 >gi|228471375|ref|ZP_04056176.1| putative mobilizable transposon, excision protein [Porphyromonas uenonis 60-3] gi|228306876|gb|EEK15989.1| putative mobilizable transposon, excision protein [Porphyromonas uenonis 60-3] Length = 314 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 48/136 (35%), Gaps = 12/136 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ L IPI++ + + K Y A P+ ++ S + + ++ + Sbjct: 8 LQHLKA-IPIADYLHTTYGIEPAKRYNGYALYHA--PYREDFNASMKVDFWENLWHDYGT 64 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAI---------AGVPLPVVDPKIEKKEKIQTDLI 118 G + + + GCS E+++ LA + + E++ + ++ Sbjct: 65 GQGGSIIDLVMRMQGCSAYEAMKHLAGKRETVIAPSSFHREDHIEHRRDEQRANNRRHIL 124 Query: 119 RLIEVATDFFHHSLKN 134 + + L+ Sbjct: 125 SISDELPSHLQRYLRE 140 >gi|315224430|ref|ZP_07866260.1| replicative DNA helicase DnaB [Capnocytophaga ochracea F0287] gi|314945633|gb|EFS97652.1| replicative DNA helicase DnaB [Capnocytophaga ochracea F0287] Length = 525 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 67/202 (33%), Gaps = 30/202 (14%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 Q SL +GKL + E A+L ++ + + L + + Q ++ +F Sbjct: 20 SRTQVSLERGKLPPQDLNLEEAILGAMLIDKKGVDDVIDILNPEVFYKKQHQLIYQAIFE 79 Query: 525 DFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLWSA 565 F E + + ++L + G L +++ R + + Sbjct: 80 LFNESEAIDLLTVAEQLRKNGNLEAVGGEFYLINLTQRVSSSANVEFHARIILQKFIKRK 139 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 E + + Y ++ ++ E+ + + +++ + + + ++ Sbjct: 140 LIEISSEIIEDAYDDTRDVFDSLDSAEQKLYEVTQGNLKRSSEAAGDLVIKALKKIQDLS 199 Query: 626 IQIHQIESQEAMIEGF-GKMSG 646 + +GF G SG Sbjct: 200 NK----------KDGFSGVPSG 211 >gi|282855408|ref|ZP_06264730.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] gi|282586756|gb|EFB92002.1| conserved hypothetical protein [Pyramidobacter piscolens W5455] Length = 819 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 22/97 (22%) Query: 21 IGQYV-DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 +G V R + C P E PSF + KG ++ + G Sbjct: 17 VGPRVGKLRRS-----DDELLMCSPLRKEHNPSFTVSLEKGCWHDLGTNEGGT------- 64 Query: 80 LLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 + LA GVP P + + D Sbjct: 65 ---------LTELAGRLGVPAPEYAGGGASSSRKEQD 92 >gi|150004005|ref|YP_001298749.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|149932429|gb|ABR39127.1| DNA primase [Bacteroides vulgatus ATCC 8482] Length = 318 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAK-RIRIADYLHSLGYSPVKQQGVNL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|312126681|ref|YP_003991555.1| zinc finger chc2-family protein [Caldicellulosiruptor hydrothermalis 108] gi|311776700|gb|ADQ06186.1| zinc finger CHC2-family protein [Caldicellulosiruptor hydrothermalis 108] Length = 361 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 99/361 (27%), Gaps = 45/361 (12%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSFHCNDSKGFYYCF 65 +D+L + I +R CP+ DE + + N +K + C Sbjct: 10 QDVLDRVRI-------TVLKQRGNELN-----CLCPYCDEPHRREGHLYINIAKDTFICH 57 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAI--------AGVPLPVVDPKIEKKEKIQTDL 117 C +G+ L + L E+ + LA + + + + K Sbjct: 58 KCGRQGNALQLYALLTNQDTKEAYKELAQEIASGSQRLHHIQYKLQTREAQPK------Y 111 Query: 118 IRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 I EV + LK +++ L RG+ AI + + E R Sbjct: 112 IAPPEVRDKVYREFLKLLTLNEKHKADLLRRGLSETAIRVKGYKTLFVEKEKRLEICRTL 171 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + P+++ GQ+I R S S Sbjct: 172 QTKGYSLEGIPGFFKHKTTGEWDFIPYQGYAIPVKNLNGQIIGLQVRMDEPCLSKYRWFS 231 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM--DVLSLCQAGVQNV 294 + N S + + EG + DV + + Sbjct: 232 SSSSKDVGTPAEANLH------------VTGSCSDDVVYITEGVLKADVAAYLSGKMFIG 279 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID-LVLCHLIPGNRVNFVLL 353 + + + + L ++L FD D + ++ + G + + Sbjct: 280 LPGVSSCHKQLIQTLQQLQPKLVILAFDMDYREKKEVAYNLEKIKSMLAENGFKFKQIEW 339 Query: 354 S 354 Sbjct: 340 D 340 >gi|294813707|ref|ZP_06772350.1| Replicative DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|294326306|gb|EFG07949.1| Replicative DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 497 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 28/225 (12%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + G R + + R + + E ++L ++ Sbjct: 25 PVSRQRRGDQRSGRDDQHDRGRDSEGWDGGSPGFERVPPQDLD--AEQSVLGGMLLSKDA 82 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + + L + + +++ + + + + P + L +RG ++ R Sbjct: 83 IADVVEVLKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITRVG 136 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKT 614 + L + Y + + R + R+ E +I Q+ + E Sbjct: 137 GASYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIV 192 Query: 615 AILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 193 NSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 237 >gi|254391462|ref|ZP_05006664.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|326442130|ref|ZP_08216864.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064] gi|197705151|gb|EDY50963.1| replicative DNA helicase [Streptomyces clavuligerus ATCC 27064] Length = 494 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 26/225 (11%), Positives = 68/225 (30%), Gaps = 28/225 (12%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + G R + + R + + E ++L ++ Sbjct: 22 PVSRQRRGDQRSGRDDQHDRGRDSEGWDGGSPGFERVPPQDLD--AEQSVLGGMLLSKDA 79 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + + L + + +++ + + + + P + L +RG ++ R Sbjct: 80 IADVVEVLKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITRVG 133 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKT 614 + L + Y + + R + R+ E +I Q+ + E Sbjct: 134 GASYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEIV 189 Query: 615 AILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 190 NSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 234 >gi|192823958|ref|YP_001994604.1| gp57 [Mycobacterium phage Jasper] gi|190610553|gb|ACE80072.1| gp57 [Mycobacterium phage Jasper] Length = 180 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 C H+E PS + + C +C +G+ ++ L ++ +V+R Sbjct: 32 CLCWAHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82 >gi|332661855|ref|YP_004451325.1| hypothetical protein Halhy_6636 [Haliscomenobacter hydrossis DSM 1100] gi|332337352|gb|AEE54452.1| hypothetical protein Halhy_6636 [Haliscomenobacter hydrossis DSM 1100] Length = 300 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 34 AVKGDYWACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSALLGCSFI-ESVQ 90 +YW PF E SFH + K + F G + F+ G + E++Q Sbjct: 27 KGGKEYWYLSPFRQEMIASFHTSFLGGKWIWNDFG-DTGGTVIDFVMRYKGYHHVQEALQ 85 Query: 91 RLAA--IAGVPLPVVDPKIEKKEKIQTDLIR 119 L A AG+ ++++ Q L Sbjct: 86 FLEAIFKAGMAP----SAAQEEKSPQGALFD 112 >gi|224373110|ref|YP_002607482.1| replicative DNA helicase [Nautilia profundicola AmH] gi|223589599|gb|ACM93335.1| replicative DNA helicase [Nautilia profundicola AmH] Length = 466 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 11/158 (6%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-- 541 E +L ++ I ++ L + + Q L++ + + + + L Sbjct: 9 ERGILSAILFDGKIYEDVAAILKPLDFYLPFHQNLFAAMEDLYKKDYPIDEIFLKDHLVK 68 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FRLLSRQKEEIE 599 + EL ++ + + E + V++ K+ + EE+E Sbjct: 69 QNKFDEELFLEILGTAPIEAVEAYAREIKDLAVKRELIHLSNEIKKTVLEDDKKAIEEVE 128 Query: 600 K------QIAQVTAKGEAEKTAILISILHE-VHIQIHQ 630 + IA G+ +++ +I+ E + QI + Sbjct: 129 EIQGKLFSIATSNLAGDFKESEAIINDTLEYIKTQISK 166 >gi|86141541|ref|ZP_01060087.1| DNA primase [Leeuwenhoekiella blandensis MED217] gi|85832100|gb|EAQ50555.1| DNA primase [Leeuwenhoekiella blandensis MED217] Length = 284 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 1/63 (1%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 N K ++ P E SF + +Y G+ + + L + E++ Sbjct: 29 RNTEKEAWF-LSPLRSETQASFKVSKKLNCWYDHGLGKGGNCIDLICELQNIAVREALAI 87 Query: 92 LAA 94 LA Sbjct: 88 LAQ 90 >gi|303236692|ref|ZP_07323273.1| mobilizable transposon, excision family protein [Prevotella disiens FB035-09AN] gi|302483196|gb|EFL46210.1| mobilizable transposon, excision family protein [Prevotella disiens FB035-09AN] Length = 327 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 88/309 (28%), Gaps = 37/309 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+++ I + + + + ++ W PF E+ SF N +Y F Sbjct: 21 IQEIKT-IKLQDFLASLGHTPIKQQGNKL-----WYLSPFRTERQASFKVNTEINQWYDF 74 Query: 66 SCHVKGDHLSF---LSALLGCSFIESVQRLAAIA-----GVPLPVVDPKIEKKEKIQTDL 117 G+ ++ L S++ ++++ +P+P + ++ + +L Sbjct: 75 GVGKGGNIIALAEVLYKSSDISYL--IRQIERNVPSCVHSLPIPYTKKESQQHAQSFENL 132 Query: 118 IRL---IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 L + H + + + + Sbjct: 133 KILPLTHPALIRYLHERCIDMEVATAVCNELHYDSNGKHYFGIGFPNSAGGYEIRNPFFK 192 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYL 234 ++ I + ++ F + L F + RT + L Sbjct: 193 GSIAPKD--ISVFYANEPKKICFLFEGFMDFLSFMTLRKLKNLQ----RTGLSQQDYIVL 246 Query: 235 NSPETILFHKGKNLYNFFG---------ALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS 285 NS + + L ++ A K + K++ R+ L + D+ Sbjct: 247 NSVSN-IHKVTEKLSHYDSIQCYLDNDDAGRNAYKQLSKELSRSVLDSSSLYSDFKDLND 305 Query: 286 LCQAGVQNV 294 A ++ Sbjct: 306 YLCAEFKHS 314 >gi|254384808|ref|ZP_05000145.1| replicative DNA helicase [Streptomyces sp. Mg1] gi|194343690|gb|EDX24656.1| replicative DNA helicase [Streptomyces sp. Mg1] Length = 491 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 20/223 (8%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + G + +D+ ++ + E ++L ++ Sbjct: 16 DRLPARPRRNGEGRGRGDDQQDRGREGGSWDGGGGGFERVPPQDLDAEQSVLGGMLLSKD 75 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + L + + ++ + + + + P + L RG + ++ Sbjct: 76 AIADVVEVLKGHDFYRPSHETIYQAILDLYAKGEPADPITVGAELTRRG---EISKVGGA 132 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 L + A + A+ +R + Q+ E Sbjct: 133 SYLHTLVQSVPTAANAEYYAEIVHERAVLRRLVAAGTKIT----QMGYAADGDVDEIVNS 188 Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+MSG Sbjct: 189 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGQMSG 231 >gi|330890160|gb|EGH22821.1| hypothetical protein PSYMO_15566 [Pseudomonas syringae pv. mori str. 301020] Length = 966 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFS 66 + I ++ ++ K +Y A P +K S + SKG + F+ Sbjct: 14 QVKSAALRNIDKVLAHWLP--NGKRVDGGKEYTAPNPTRTDKRAGSLKISISKGTWSDFA 71 Query: 67 CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 GD + + + G + +E+ ++LA + GV Sbjct: 72 TGDKGGDLIDLVRYIDGGTDVEACKKLADLLGVT 105 >gi|123470155|ref|XP_001318285.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121901040|gb|EAY06062.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Length = 2416 Score = 54.9 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 83/263 (31%), Gaps = 7/263 (2%) Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 + L + E +E L+ ++ IK ++++L Sbjct: 801 EQTENELTQQIEEIEEEKSEELKKKNEEIERLQNEIEELNKEIKSLTEE---IDDLQEKL 857 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK-PSLREAALLLTL 491 + ++ + + + + D+ RL + V +K +EAA L Sbjct: 858 ENAKKEIQELQEYAEKSQENDKQTIDELKEKLRLANETKVTDSDTKVLVESKEAAEQKVL 917 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + I + + + E + + + E + E L + + Sbjct: 918 LLEKEISDLKIEIEDLKSVIDEENE---QKVSNTEAENRIHELESEISELKKELDQNNNQ 974 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 Q D ++ ++ I + + R L + E++K++ Q + Sbjct: 975 QNDEKIEKLQKEIEDLKSVIDEENEQKVSNTEAENRIHELESEISELKKELDQNNNQQND 1034 Query: 612 EKTAILISILHEVHIQIHQIESQ 634 EK L + ++ ++ +++ Sbjct: 1035 EKIEKLQKEIEDLKNELESSKAE 1057 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 33/266 (12%), Positives = 84/266 (31%), Gaps = 20/266 (7%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + +E+ E + I +KD+ R + + L + + E+ Sbjct: 710 LKTEYLKLIEEKRETDEKYNKEIEELKDRINRGEGGDEVVEELAKENDELSKENEELKEK 769 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---------------LLTLINH 494 K + + + ++ + + ++ E L Sbjct: 770 LKDIKSSEEIEELTNQIEELEKELNEKKEQLEQTENELTQQIEEIEEEKSEELKKKNEEI 829 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + E + +I+ E+ L L + E + + ++ + LK+ Sbjct: 830 ERLQNEIEELNKEIKSLTEEIDDLQEKLENAKKEIQELQEYAEKSQENDKQTIDELKEKL 889 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----G 609 R + + + T+ + Q+ L L K L + E+++ I + + Sbjct: 890 RLANETKVTDSDTKVLVESKEAAEQKVLLLEKEISDLKIEIEDLKSVIDEENEQKVSNTE 949 Query: 610 EAEKTAILISILHEVHIQIHQIESQE 635 + L S + E+ ++ Q +Q+ Sbjct: 950 AENRIHELESEISELKKELDQNNNQQ 975 Score = 39.1 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 22/224 (9%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + +++QQL K + ++ + L + Sbjct: 656 ENYKKVTNEKIQQLENTKRQLQEQINNQPKPEGNLAMLQKENEEYQRQINELKDLKTEYL 715 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 T + ++E + + +++L E EE+ ++L Sbjct: 716 KLIEEKRETDEKYNKEIEELKDRINRGEGGDEVVEELAKENDELSKEN-----EELKEKL 770 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ------------ALALYKRFR 589 + E +++L Q+ + + + Q + Sbjct: 771 KDIKSSEEIEELTNQIEELEKELNEKKEQLEQTENELTQQIEEIEEEKSEELKKKNEEIE 830 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 L + EE+ K+I +T E+ L L +I +++ Sbjct: 831 RLQNEIEELNKEIKSLT-----EEIDDLQEKLENAKKEIQELQE 869 >gi|163784037|ref|ZP_02178994.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1] gi|159880694|gb|EDP74241.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1] Length = 486 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 65/185 (35%), Gaps = 27/185 (14%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 E A+L +++ P+++ L + N + + L+ + E P Sbjct: 7 SPLPHDDEAERAVLGSILIDPSVVDTVINILKPDDFYNIKNKVLYEGIIELVQEGVVPEP 66 Query: 535 EEIHQR-------------------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 + + + +L+++ Q+++ + ++ Sbjct: 67 IVLRHHLEKKGKLKLLGNENYITFVMSDAAPQNVLEKIANQLKEKSI--------ARNLI 118 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q + L K + ++ EE E QI +++ + L IL + I+++ +E Sbjct: 119 QIAKNILIKSKEVKDVNELIEEAENQIFKLSEEKNISDYYPLGEILKQTLKIINELSKKE 178 Query: 636 AMIEG 640 ++ G Sbjct: 179 TIVTG 183 >gi|302535604|ref|ZP_07287946.1| replicative DNA helicase [Streptomyces sp. C] gi|302444499|gb|EFL16315.1| replicative DNA helicase [Streptomyces sp. C] Length = 493 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 23/223 (10%), Positives = 62/223 (27%), Gaps = 20/223 (8%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + G + +D+ ++ + E ++L ++ Sbjct: 18 DRLPARSRRGGEGRGRGDDQQDRGREGGSWDGGGGGFERVPPQDLDAEQSVLGGMLLSKD 77 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + L + + ++ + + + + P + L RG + ++ Sbjct: 78 AIADVVEVLKGHDFYRPSHETIYQAILDLYAKGEPADPITVGAELTRRG---EISKVGGA 134 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 L + A + A+ +R + Q+ E Sbjct: 135 SYLHTLVQSVPTAANAEYYAEIVHERAVLRRLVAAGTKIT----QMGYAADGDVDEIVNS 190 Query: 617 LISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+MSG Sbjct: 191 AQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGQMSG 233 >gi|213966499|ref|ZP_03394670.1| replicative DNA helicase [Corynebacterium amycolatum SK46] gi|213950865|gb|EEB62276.1| replicative DNA helicase [Corynebacterium amycolatum SK46] Length = 530 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 11/151 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E ++L ++ + ++ + Y++L + Q ++S + + E P Sbjct: 88 RTPPHNIEAEQSVLGAMLLNSEVVADVYEQLTPEDFYRPAHQTIYSAILHLYGESSEIDP 147 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + RL G L+++ + L S A Q A + R+ Sbjct: 148 ILLAGRLDRTGD---LERIGGPLYLHTLASLVPTAAN-------AQFYARIVAEKATIRR 197 Query: 595 KEEIEKQIAQVTAKGEAE-KTAILISILHEV 624 E +IAQ+ G + + L+ ++ Sbjct: 198 LVEAGTKIAQIGYAGAEDTEPEQLVDEAQQL 228 >gi|83590641|ref|YP_430650.1| hypothetical protein Moth_1807 [Moorella thermoacetica ATCC 39073] gi|83573555|gb|ABC20107.1| hypothetical protein Moth_1807 [Moorella thermoacetica ATCC 39073] Length = 690 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 33 NAVKGDYW-ACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKGDHLSFLSALLGCSFIESVQ 90 N + CCP HD+ PSF N G++ C C L FL A+ G ++++ Sbjct: 35 NERDDGWMDGCCPLHDDTRPSFSFNRWSGYWLCRAGCGAGW-PLDFLEAVAGLDGDDALE 93 Query: 91 RLAAIAG 97 + + G Sbjct: 94 EIRELCG 100 >gi|253571802|ref|ZP_04849208.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839010|gb|EES67095.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 291 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 9/106 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D+ IPI++ + + + R+ ++W P+ +E+TPSF N K + F Sbjct: 3 IEDIR-KIPITDFLARMGHEPTARKGN-----EWWYSAPYREERTPSFRVNILKNVWQDF 56 Query: 66 SCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKK 110 GD S ++G F + ++ G +P + + ++K Sbjct: 57 GIGRGGDIFSLAGEIIGSGDFKSQAKFISESLGGIVPEIVFRPKEK 102 >gi|325853907|ref|ZP_08171423.1| hypothetical protein HMPREF9303_1984 [Prevotella denticola CRIS 18C-A] gi|325484244|gb|EGC87174.1| hypothetical protein HMPREF9303_1984 [Prevotella denticola CRIS 18C-A] Length = 255 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 P+ E+TPSF + +K ++ F GD Sbjct: 6 PYRTERTPSFKVDTTKNVWFDFGTGKGGDIFD 37 >gi|301161312|emb|CBW20852.1| putative conjugative transposon protein traP [Bacteroides fragilis 638R] Length = 292 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 P+ E+TPSF + +K ++ F GD Sbjct: 35 PYRTERTPSFKVDTAKNIWFDFGTGKGGDIFD 66 >gi|297616291|ref|YP_003701450.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] gi|297144128|gb|ADI00885.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] Length = 675 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 90/393 (22%), Gaps = 66/393 (16%) Query: 38 DYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 HD++ PS N GFY C C FL + AG Sbjct: 42 SLKCLN--HDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AG 83 Query: 98 VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157 + +L E + H + I+ Sbjct: 84 IAPEDASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEA 140 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 K P+ + E + D A + RG++ Sbjct: 141 KARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECL-----VVPFRVRGKI 195 Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277 A GR GA+ + S+ S ++V Sbjct: 196 RAIRGRAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIV 232 Query: 278 EGYMDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 EG D L +L GV V S+ + + ++ I L DD Sbjct: 233 EGESDALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRS 292 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393 A+ ++ + + G+D ++ D Sbjct: 293 ALAVLGEERCKVVELPWKRGDVGKDICEWLTRN-------------DHTDQELVELIPLE 339 Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 R L D +R ++ Sbjct: 340 EHQDRFSRYYRVEELLKREPAEPDWLVRGMIAR 372 >gi|325297657|ref|YP_004257574.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|324317210|gb|ADY35101.1| DNA primase [Bacteroides salanitronis DSM 18170] Length = 295 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 21/80 (26%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQ------YVDWDRRKTNAVKGDYWACCPFHDEKTPSFH 54 MN I I + + Q YV YW PF E TPSF Sbjct: 1 MNISEA------KQIRIVDFLAQLGHHAQYVK---------SKQYWYLSPFRQEDTPSFK 45 Query: 55 CNDSKGFYYCFSCHVKGDHL 74 ND +Y F GD + Sbjct: 46 VNDRLNEWYDFGAATGGDLV 65 >gi|320009719|gb|ADW04569.1| replicative DNA helicase [Streptomyces flavogriseus ATCC 33331] Length = 491 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 70/226 (30%), Gaps = 26/226 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 S R K + ++G S ++ + E ++L ++ Sbjct: 16 PSDRLPVSRQRRGEGKGREEQHERGRESGWDGGSSGFERVPPQDLDAEQSVLGGMLLSKD 75 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + + + + +++ + + + + P + L +RG ++ + Sbjct: 76 AIADVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKV 129 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613 L + Y + + R + R+ E +I Q+ + E Sbjct: 130 GGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 185 Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 186 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231 >gi|257063560|ref|YP_003143232.1| hypothetical protein Shel_08280 [Slackia heliotrinireducens DSM 20476] gi|256791213|gb|ACV21883.1| hypothetical protein Shel_08280 [Slackia heliotrinireducens DSM 20476] Length = 335 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 60/382 (15%), Positives = 112/382 (29%), Gaps = 74/382 (19%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + I L +P +++ Y + ++ C + +++ PS Sbjct: 2 ISAENIATLKAAMP--DVLHHY------GVANLGRNF--CSLWREDRDPSCRFYADSNLV 51 Query: 63 YCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------- 114 + V D + + G S F + V+ ++ I G L K + + Sbjct: 52 TDYGEGVTVDVFGLVGKVEGVSGFADQVRIVSQIVGHDLDECADYAPKAKAERPPFEPPA 111 Query: 115 TDLIRLIE-VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHL 173 ++ + L K YL RG I LGY R Sbjct: 112 KTGFKVNVLETVEKCLCDLYEPEGKPALGYLYGRGFSDADIVRCGLGYVAKPSDLNRCFT 171 Query: 174 RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG--QVIAFGGRTLSKGESV 231 ++ + P RG QV R + + Sbjct: 172 LRERVKV----------------------NGYVCIPYPHDRGFSQVRYCMLRAVPAEQ-- 207 Query: 232 KYLNSPETILFHKGKNLYNFFGALNYLQKSI--RKDVRRNSSSFIILVEGYMDVLSLCQA 289 PE +KS R+ + + LVEG +D ++L + Sbjct: 208 ----PPEHK------------EIRPTGKKSPLFREYLLAEGLPVVYLVEGLLDAIALERV 251 Query: 290 GVQN--VVSSLGTALTEYQLRLLWK-----LSPRIVLCFDGDDPGLRAAYKAIDLVLCHL 342 + VV+ GT L + ++L ++V+ D D+ G +AA + Sbjct: 252 STRPVSVVALGGTGLKKRIGQVLCYTPAELRPRKVVVAMDEDEAGDKAAKT---IAADLK 308 Query: 343 IPGNRVNFVLLSRG-EDPDSFI 363 G + + G +D + Sbjct: 309 KIGVPYSLMSWPDGCKDACDVL 330 >gi|312867591|ref|ZP_07727798.1| DnaB-like helicase C-terminal domain protein [Streptococcus parasanguinis F0405] gi|311096888|gb|EFQ55125.1| DnaB-like helicase C-terminal domain protein [Streptococcus parasanguinis F0405] Length = 643 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 22/115 (19%) Query: 32 TNAVKGDYWA-CCPFHDE----KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-F 85 KG Y C H +T +FH D + CFSC GD + + G F Sbjct: 21 RKGGKGAYICPLC--HSGEGRNRTGAFHIYDEIQ-WKCFSCDRGGDIFDLIGYVEGIDKF 77 Query: 86 IESVQRLAAIAGVPLPVVDPKIE-------------KKEKIQTDLIRLIEVATDF 127 + ++R+ + + + K + K+E+ + + + AT Sbjct: 78 KDQLKRVRELFNLSTECDELKNQRTEYLNSNAVFPLKEEEKKDNYLSFYNEATKH 132 >gi|203463445|ref|YP_002223995.1| gp54 [Mycobacterium phage Solon] gi|197312632|gb|ACH62986.1| gp54 [Mycobacterium phage Solon] Length = 171 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 C H+E PS + + C +C +G+ ++ L ++ +V+R Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82 >gi|192823868|ref|YP_001994786.1| gp55 [Mycobacterium phage DD5] gi|192824140|ref|YP_001994695.1| gp54 [Mycobacterium phage Lockley] gi|190610370|gb|ACE79891.1| gp54 [Mycobacterium phage Lockley] gi|190610646|gb|ACE80164.1| gp55 [Mycobacterium phage DD5] Length = 180 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 C H+E PS + + C +C +G+ ++ L ++ +V+R Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82 >gi|12657905|ref|NP_075318.1| gp51 [Mycobacterium phage Bxb1] gi|157786448|ref|YP_001491625.1| Putative DNA primase [Mycobacterium phage U2] gi|12584046|gb|AAG59756.1| gp51 [Mycobacterium phage Bxb1] gi|40769368|gb|AAR89694.1| gp54 [Mycobacterium phage U2] Length = 171 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 23/51 (45%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 C H+E PS + + C +C +G+ ++ L ++ +V+R Sbjct: 32 CLCWHHEESRPSAAVSYQLNAFNCLACSARGNAITLLMTYEEVNYQTAVER 82 >gi|51102928|gb|AAT96077.1| putative inner membrane protein [Pseudomonas viridiflava] Length = 964 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 5/121 (4%) Query: 31 KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88 K +Y A P +K S N +KG + F+ GD + + L G + +E+ Sbjct: 37 KRVDGGKEYTAPNPTRSDKRAGSLKVNLAKGTWADFATGDKGGDLIDLVRYLDGGTDVEA 96 Query: 89 VQRLAAIAGVPLPVV---DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 ++LA V P + K L + + A + + Sbjct: 97 CRKLAEFLNVVADNSQSATPASKSKTPEWVALQPIPDEAMKKCPAKHRQHGTPSKVWVYR 156 Query: 146 E 146 E Sbjct: 157 E 157 >gi|163785130|ref|ZP_02179831.1| hypothetical protein HG1285_07799 [Hydrogenivirga sp. 128-5-R1-1] gi|159879602|gb|EDP73405.1| hypothetical protein HG1285_07799 [Hydrogenivirga sp. 128-5-R1-1] Length = 441 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 42/125 (33%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF--- 61 R+ I ++ + I ++ ++ + + CP H E+ PSF ++ Sbjct: 248 REAIDEIKRRLRIVDIF--KLEGTKSGN-----RWDCICPIHPERNPSFKVFENLETGDI 300 Query: 62 ---YYCFSCHVK------G-------------------DHLSFLSALLGCSFIESVQRLA 93 Y+ G D + L SF E+V L Sbjct: 301 AVDYH----GRSHVSKITGELTEIPDWVRETKDGLPYFDIIDLYRILKNKSFKEAVYELG 356 Query: 94 AIAGV 98 IAGV Sbjct: 357 QIAGV 361 >gi|332982989|ref|YP_004464430.1| DNA primase [Mahella australiensis 50-1 BON] gi|332700667|gb|AEE97608.1| DNA primase [Mahella australiensis 50-1 BON] Length = 365 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 52/363 (14%), Positives = 98/363 (26%), Gaps = 46/363 (12%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPS------FHCNDSKGFYY 63 D+ I I ++ + + + +Y A CP + + + K YY Sbjct: 3 DIKE-IHILDV-ADRLGLTPQPK--TRTEYVARCPICGDSNDKRHKHLYLNIVEDK--YY 56 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA-----GVPLPVVDPKIEKKEKIQTDLI 118 C C + G + + G E+ + L A V VV+ K + + Sbjct: 57 CTRCGIGGYAIGLYAKATGIDTKEAYRELINDAPVSHTAVKPSVVNVPDTADIKTRDETY 116 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + + + + L RG+ I P + + R Sbjct: 117 TALLKKLELYIN---------HTADLRRRGLTVKEIISRGYRSVPQEAAARQSICRALIQ 167 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK--GESVKYLNS 236 + + DN + L P+R G++ R S G ++ + Sbjct: 168 TGHMLKGVPGFYTDDNGNWDFYGSAGYL-IPVRDVEGRIQGMQVRLDSPGIGGKYRWFSM 226 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 P+ N + + + EG + + Sbjct: 227 PDKD---------------NSVSAKSWVHTSYGIDDEVWITEGPLKADVASFLTGHTFIG 271 Query: 297 SLGTALTEYQLRLLWKL-SPRIVLCFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLS 354 G T+ L ++ V+ FD D +AI L G + Sbjct: 272 VAGVNATKGLAEQLKQMGIKEAVVAFDMDFVRNEHVEEAIKHLHASLKKAGIKTATACWH 331 Query: 355 RGE 357 G Sbjct: 332 PGM 334 >gi|320333454|ref|YP_004170165.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM 21211] gi|319754743|gb|ADV66500.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM 21211] Length = 630 Score = 54.5 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 63/376 (16%), Positives = 113/376 (30%), Gaps = 42/376 (11%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACC--PFHDEKTPSFHCNDSKGFYYCFS--C 67 H+ + ++ +Y D C P H + S H CF C Sbjct: 253 RQHVNLCEIMARYRAVDSSGQ--------CKCTHPDHPDAQGSMHVWRDHAT--CFGTKC 302 Query: 68 HVK-G-----DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK-KEKIQTDLIRL 120 G D +S G +F+E+V A + G LP + + E ++ + + Sbjct: 303 RRNDGRRHTEDAISVTMRFEGLTFLEAV---AHLNGGNLPTEEQLPTEWDEPVREEALD- 358 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 A + L +D + + ++ SR E + Sbjct: 359 ---AARVRNAQ---TDWTALVDAAHRALLDQGSDQALQVMDYLYSRGFTDETILAAKLGV 412 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 L+ ++ +R RL+ P G + GRT+ +S + Sbjct: 413 VDTSVPDSLLPLNSKGAPSRTWRGRLVIPNLRPDGTAMDVAGRTMQPKP----TDSRKAR 468 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 + K + + S +++VEG +D LS+ QA + V + Sbjct: 469 WYRKYAI-----PTRPGGYGVPPYGLAQLSRRPVLVVEGQLDALSVRQALPTSNVLGIAG 523 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLL--SRGED 358 + R L D D A + G V V S +D Sbjct: 524 IGNLNPEHVSGLAGHRAYLLLDPDTDHDAGGAAARSAIDALHAAGAEVYLVPKLVSTTDD 583 Query: 359 PDSFIRCYGKTAFEKL 374 + + G+ F +L Sbjct: 584 LNDCLVGMGQDDFAEL 599 >gi|75812792|ref|YP_320409.1| ATPase [Anabaena variabilis ATCC 29413] gi|75705548|gb|ABA25220.1| ATPase [Anabaena variabilis ATCC 29413] Length = 873 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 2/214 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + +L + ++AL+ Sbjct: 322 YRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAATLSA 381 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + + + R Sbjct: 382 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETDSASR 441 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + D QA + R R + ++ E + +I Q + + Sbjct: 442 ERLERLERELAELKERQDALNAQWQAEKQIIDRIRQIRQEIERVNVEIQQAERDYDLNRA 501 Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 A L S L E+ Q+ + E++ A I+ GK R Sbjct: 502 AELKYSKLTELQRQLEEAEARLAQIQTSGKSLLR 535 >gi|317133723|ref|YP_004089634.1| hypothetical protein Rumal_3285 [Ruminococcus albus 7] gi|315450185|gb|ADU23748.1| hypothetical protein Rumal_3285 [Ruminococcus albus 7] Length = 264 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFH-----DEKTPSFHCNDSKGF 61 ++D+ + +L + +D R ++ CP H D + + + Sbjct: 7 LEDIKDACNLVDLARELDIDMQRSGSHWAIR-----CPNHRGGQYDRHIGNCYITKNHKN 61 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIE 108 + C SC KGD L+ + GCSF+E+V+ L+ + ++ E Sbjct: 62 FICKSCGNKGDALTLVQQATGCSFLEAVKFLSNFVEIEPSYIEEGKE 108 >gi|255020462|ref|ZP_05292527.1| Replicative DNA helicase [Acidithiobacillus caldus ATCC 51756] gi|254970072|gb|EET27569.1| Replicative DNA helicase [Acidithiobacillus caldus ATCC 51756] Length = 457 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 10/163 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K E +++ L+ P L+ + Q L+ + +EQK Sbjct: 14 KALPYSLEAEQSVIGGLLIDPESWDRIADLLSPEDFYQKRHQVLYRCIGQMLLEQKPLDA 73 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + ELL + L +AT A V + A+ + R+ Sbjct: 74 ITLAEYLQDH---ELLAEAGGVAYVVELANATPSAANVPAYASIVRDRAILRALIHAGRE 130 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 ++ +G +T L+ ++ Q + ++A+ Sbjct: 131 IADL-----AYRPEGRDAQT--LLEEAERRIFELAQGQKRDAV 166 >gi|332654697|ref|ZP_08420440.1| toprim domain protein [Ruminococcaceae bacterium D16] gi|332516661|gb|EGJ46267.1| toprim domain protein [Ruminococcaceae bacterium D16] Length = 633 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 30/144 (20%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + G+ R HD S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQGRGEQLTRAGQEYRWKR-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104 +Y S G + F+ G SF E+V+ L A+ + LP Sbjct: 49 --WYRHSQSKGGAPIDFVMEFYGKSFTEAVELLTGEKGAAPPPDRPTPASFSDFRLPPRS 106 Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128 P T R+ E T FF Sbjct: 107 PDNRTARNYLTAARRIDEDVTGFF 130 >gi|188997594|ref|YP_001931845.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932661|gb|ACD67291.1| replicative DNA helicase [Sulfurihydrogenibium sp. YO3AOP1] Length = 470 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 11/144 (7%) Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E A+L +LI +P I +L + + + ++ + F + K + Sbjct: 14 EDAERAILGSLIVYPEITDSVLTKLKIDDFYLQKHKIIYETIIDLFNQGKPLEIIILKDG 73 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ++G E + + + S + Q + + K +L E +K Sbjct: 74 LEKKGKLEFVGGI-SYLYQLSEESVPPDIAF--------QIVDIIKEKSVLRSLIESAQK 124 Query: 601 QIAQVTAKGEAEKTAILISILHEV 624 IA+ K L+ + Sbjct: 125 IIAKAKNKESD--INSLLEEAESI 146 >gi|298245918|ref|ZP_06969724.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] gi|297553399|gb|EFH87264.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] Length = 416 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 29/91 (31%), Gaps = 18/91 (19%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HD---EKTPSFHCN---- 56 I++ +IG+YV DR CCPF H + PS + Sbjct: 323 TIQEWCAQQDALGVIGRYVVLDRSG--------LGCCPFGWHHSDGKDTHPSLWVHEPSR 374 Query: 57 DSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87 +YC + G FL G E Sbjct: 375 PGGACWYCHTWKQGGSVFDFLRLYYGLEARE 405 >gi|330752044|emb|CBL80555.1| Replicative DNA helicase [uncultured Flavobacteria bacterium] Length = 510 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 61/207 (29%), Gaps = 15/207 (7%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 + +Q + G++ + E A+L L+ L + L + Sbjct: 4 PQYNNASAPKNQGRSANLTAGGRVPPQAIDLEEAVLGALLIDKNALSKIIDILHPDAFYK 63 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSAT 566 ++ + ++ + F + + + L + G L QL ++V Sbjct: 64 DQHKHIFKIITHLFGDNQPVDILTVAAELRKDGSMKKAGGESFLAQLSQKVSSGAHIEYH 123 Query: 567 TEANIVDVR---------QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + + + A L Q E+ ++AQ K E L Sbjct: 124 ARIVLQKHIQRELVRISSEIIESAFDETTDVLELLDQAEQKLFEVAQGNLKRNYESAEEL 183 Query: 618 ISILHEVHIQIHQIESQEAMIEGFGKM 644 I + I + E + GF + Sbjct: 184 IRKAIDKIETISKQEGLSGVPSGFAAL 210 >gi|147678499|ref|YP_001212714.1| DNA primase [Pelotomaculum thermopropionicum SI] gi|146274596|dbj|BAF60345.1| DNA primase [Pelotomaculum thermopropionicum SI] Length = 315 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 45/339 (13%), Positives = 81/339 (23%), Gaps = 69/339 (20%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH----VKGDHLSFLSALLGCSFIESVQ 90 AC PF E+ PSF G + KG+ + L+ L ++ E+ Sbjct: 28 TGDKLHACSPFRHERHPSFAVRLDNGVWIDSGSDDEGWRKGNIIKLLAFLRNETYQETAD 87 Query: 91 RLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGID 150 L G P + ++ L Sbjct: 88 YLLEEYG-------PFAGDPDHLRLTY-------------DLTPRTAPVSLDPAVLDEFK 127 Query: 151 SHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPI 210 + + + YDR + FP Sbjct: 128 YRHPYLTERRGIEEKWQRAFRVG-------------------------YDRKHRAVTFPW 162 Query: 211 RSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 +G+++ R S + + + L + A L Sbjct: 163 YDRQGRLVNVKFR--SVTDKRFWFYGDGQPVGDHVYALNFIYKAGKRL------------ 208 Query: 271 SSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330 +VE +D ++L QAG V + ++ +V+ D D G R Sbjct: 209 ---AYVVESEIDAITLWQAGFPAVALGGANLSPRQRELIIQSPLECLVVATDNDKAGRRI 265 Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 A + + +D + R Sbjct: 266 ARTIAGQLGGFKAVQAIDLPGHV---KDVNDLTREELLE 301 >gi|237757028|ref|ZP_04585480.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5] gi|237690808|gb|EEP59964.1| replicative DNA helicase [Sulfurihydrogenibium yellowstonense SS-5] Length = 461 Score = 54.1 bits (128), Expect = 6e-05, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 11/144 (7%) Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E A+L +LI +P I+ +L + + + ++ + F + K + Sbjct: 5 EDAERAILGSLIVYPEIIDSVLTKLKIDDFYLQKHKIIYETIIDLFNQGKPLGLIILKDG 64 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L ++G E + + + S + Q + + K +L E +K Sbjct: 65 LEKKGKLEFVGGI-SYLYQLAEESVPPDIAF--------QIVDIIKEKSILRSLIESAQK 115 Query: 601 QIAQVTAKGEAEKTAILISILHEV 624 IA+ K L+ + Sbjct: 116 IIAKAKNKESD--INSLLEEAESI 137 >gi|256819036|ref|YP_003140315.1| replicative DNA helicase [Capnocytophaga ochracea DSM 7271] gi|256580619|gb|ACU91754.1| replicative DNA helicase [Capnocytophaga ochracea DSM 7271] Length = 525 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 67/202 (33%), Gaps = 30/202 (14%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 Q SL +GKL + E A+L ++ + + L + + Q ++ +F Sbjct: 20 SRTQVSLERGKLPPQDLNLEEAILGAMLIDKKGVDDVIDILNPEVFYKKQHQLIYQAIFE 79 Query: 525 DFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLWSA 565 F E + + ++L + G L +++ R + + Sbjct: 80 LFNESEAIDLLTVAEQLRKNGNLEAVGGEFYLINLTQRVSSSANVEFHARIILQKFIKRK 139 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 E + + Y ++ ++ E+ + + +++ + + + ++ Sbjct: 140 LIEISSEIIEDAYDDTRDVFDSLDSAEQKLYEVTQGNLKRSSEAAGDLVIKALKKIQDLS 199 Query: 626 IQIHQIESQEAMIEGF-GKMSG 646 + +GF G SG Sbjct: 200 NK----------TDGFSGVPSG 211 >gi|297617318|ref|YP_003702477.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] gi|297145155|gb|ADI01912.1| regulatory protein DeoR [Syntrophothermus lipocalidus DSM 12680] Length = 675 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 90/393 (22%), Gaps = 66/393 (16%) Query: 38 DYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 HD++ PS N GFY C C FL + AG Sbjct: 42 SLKCLN--HDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AG 83 Query: 98 VPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157 + +L E + H + I+ Sbjct: 84 IAPEDASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEA 140 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 K P+ + E + D A + RG++ Sbjct: 141 KARLRPELPIVQEYITARGIKYEMLERFEWGYVPHDEDAGQVECL-----VVPFRVRGKI 195 Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277 A GR GA+ + S+ S ++V Sbjct: 196 RAIRGRAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIV 232 Query: 278 EGYMDVL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYK 333 EG D L +L GV V S+ + + ++ I L DD Sbjct: 233 EGESDALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRS 292 Query: 334 AIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENR 393 A+ ++ + + G+D ++ D Sbjct: 293 ALAVLGEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLE 339 Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 R L D +R ++ Sbjct: 340 EHQDRFSRYYRVEELLKREPAEPDWLVRGMIAR 372 >gi|313665037|ref|YP_004046908.1| replicative DNA helicase [Mycoplasma leachii PG50] gi|312949610|gb|ADR24206.1| replicative DNA helicase [Mycoplasma leachii PG50] Length = 442 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ L + L + + ++ + + K P + RL Sbjct: 13 AERFVLGVAMSFSNALADIISVLKVDDFSIEANKYIYQAIIDLNNKNKSVSPISVINRL- 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + +LD+ D ++ E + Y + R L +E+E + Sbjct: 72 -----EAINKLDKVGGDIVVYEIAAENYTDQGLEEYIDVIHKSGVVRKLDAVIKELE--L 124 Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + ++ + L ++ + I + E IE G ++ R+ Sbjct: 125 KRNNGNTDVDELLKVAQTKLLDIDLSIKRFE-----IEAVGDVAKRV 166 >gi|282863350|ref|ZP_06272409.1| replicative DNA helicase [Streptomyces sp. ACTE] gi|282561685|gb|EFB67228.1| replicative DNA helicase [Streptomyces sp. ACTE] Length = 491 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 25/226 (11%), Positives = 69/226 (30%), Gaps = 26/226 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 S R K + ++G ++ + E ++L ++ Sbjct: 16 PSDRLPVSRQRRGEGKGRDEQHERGRDSGWDNGQSGFERVPPQDLDAEQSVLGGMLLSKD 75 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + + + + +++ + + + + P + L +RG ++ + Sbjct: 76 AIADVVEIIKGHDFYRPAHETVYTAILDLYAKGEPADPITVAAELVKRG------EITKV 129 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEK 613 L + Y + + R + R+ E +I Q+ + E Sbjct: 130 GGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGDVDEI 185 Query: 614 TAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 + ++ V Q ++ EA+ G+M+G Sbjct: 186 VNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 231 >gi|291278467|ref|YP_003495302.1| replicative DNA helicase DnaB [Deferribacter desulfuricans SSM1] gi|290753169|dbj|BAI79546.1| replicative DNA helicase DnaB [Deferribacter desulfuricans SSM1] Length = 443 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 20/187 (10%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E +L +++ L + L + + + ++S L E K Sbjct: 7 RTPPHNLEAEQGVLASILIDEKALDKVIHLLNADDFYHPAHKLIFSTLIKLAQENKPLDI 66 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALAL------ 584 + +L + E +D + A IV + + + + Sbjct: 67 VTLISKLTDENKIEEAGGIDYISSLTDIIPNAANVGYYATIVKDKALLRNLIEISGKISS 126 Query: 585 --YKRFRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Y+ ++ +E EK+I A+ KG+ + LIS E+ + E +E +I Sbjct: 127 KAYEFSGDITELLDETEKEIFKLAEYKLKGDIRPLSELISESFELLQNL--YEKKEDII- 183 Query: 640 GFGKMSG 646 G SG Sbjct: 184 --GIPSG 188 >gi|296131505|ref|YP_003638755.1| replicative DNA helicase [Cellulomonas flavigena DSM 20109] gi|296023320|gb|ADG76556.1| replicative DNA helicase [Cellulomonas flavigena DSM 20109] Length = 1118 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 53/173 (30%), Gaps = 14/173 (8%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S + + E ++L ++ + + +++ + + ++ Sbjct: 10 APPDSGHSSGGGFDRTPPQDLDAERSVLGGMMISKDAIADVIEQIKGTDFYRPAHEAIYD 69 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L +RG ++ R A L + Y + Sbjct: 70 AILDLYGRGEPADAITVADELTKRG------EMGRVGGAAYLHTLIASVPTAANAGFYAR 123 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIH 629 + R R + R+ E +I Q+ + E + ++ V + Sbjct: 124 IV----RERSILRKLVEAGTRIVQLGYATDGGDVDELVNNAQAEVYAVTERRA 172 >gi|1145806|gb|AAA84992.1| DNA-primase [Anabaena variabilis] Length = 106 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 60/106 (56%), Gaps = 2/106 (1%) Query: 124 ATDFFHHSLKNARDKRLHYYL-DERGIDSHAIEMFKLGYAPDSRYSLREH-LRQKGFSEE 181 A F+ H+L+ ++ +R YL +R + I+ F LGYAP +L + + K + Sbjct: 1 AASFYQHALRQSQGQRAMQYLLSDRQFNEVTIQQFGLGYAPAGWETLHRYLVEDKHYPVH 60 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + +AGL+ A YD FR+RL+ PIR +G+VI FGGRTL+ Sbjct: 61 LVEKAGLIKPRKEGAGYYDVFRDRLMIPIRDIQGRVIGFGGRTLTD 106 >gi|163783025|ref|ZP_02178020.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1] gi|159881705|gb|EDP75214.1| replicative DNA helicase [Hydrogenivirga sp. 128-5-R1-1] Length = 466 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 61/176 (34%), Gaps = 11/176 (6%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLP 534 E ++L T++ P + + L + + E + L++ + + E + Sbjct: 7 KPPHDEAAERSVLGTMLADPDNIPVVLEYLNEEDFYIEEHRLLFNIILKLWQEHGNNWDE 66 Query: 535 EEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + + G + L L A L + T IV + G + L L Sbjct: 67 VVLRDYIRKEGLEDRLPFDWILGIYEEAAPLSTLETACRIVKEKSGLRAVLDLSMNLIKD 126 Query: 592 SRQKEE-------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 ++ ++ + +I +++ K + + EV I Q E ++ G Sbjct: 127 VKELQDFNTIIEVAQSKIFEISEKTTVTHYYHIKDVAREVIDMIDQFRKTERLVTG 182 >gi|186683260|ref|YP_001866456.1| ATPase [Nostoc punctiforme PCC 73102] gi|186465712|gb|ACC81513.1| ATPase AAA-2 domain protein [Nostoc punctiforme PCC 73102] Length = 880 Score = 54.1 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 77/214 (35%), Gaps = 2/214 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + +L + ++AL+ Sbjct: 329 YRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAATLSA 388 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + + + R Sbjct: 389 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQKETDSASR 448 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + D QA + R R + ++ E + +I Q + + Sbjct: 449 ERLERLERELAELKERQDALNAQWQAEKQIIDRIRQIRQEIERVNVEIQQAERDYDLNRA 508 Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 A L S L E+ Q+ + E++ A I+ GK R Sbjct: 509 AELKYSKLTELQRQLKEAEARLAQIQTSGKSLLR 542 >gi|237742741|ref|ZP_04573222.1| primase-helicase [Fusobacterium sp. 4_1_13] gi|229430389|gb|EEO40601.1| primase-helicase [Fusobacterium sp. 4_1_13] Length = 358 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 43/356 (12%), Positives = 99/356 (27%), Gaps = 46/356 (12%) Query: 23 QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL-SALL 81 +Y++ N K H++K PS + CF+C K D + Sbjct: 15 EYLELK--GIN-TKKFMRCFSLEHEDKNPSMNYFAPGKICKCFACGEKYDIFKLVGQEYN 71 Query: 82 GCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLH 141 +F + ++++ + + + E + + Sbjct: 72 LTNFHDQIEKVYELY---------------TNKELIKNANETI--YSKKGTNIDLETSNR 114 Query: 142 YYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDR 201 + + + L + +L Q + + I L + Sbjct: 115 TLKENTTNSLENMSVEFLKKYRLYIEKCQNNLSQTDYLTNRGISKELQKKRGIGYDPEFK 174 Query: 202 FRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKS 261 I + G +F R K + + + +++ Sbjct: 175 NGEWKALIIPTWYG---SFTARNTDKNSNDRLRKVGKMEIYN------------------ 213 Query: 262 IRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCF 321 ++ N +VEG +D LSL + G + ++ R Sbjct: 214 -YWQLQENPKKNFYIVEGEIDALSLEEVGKNAIALGSIASINLLIKRFQNDKPTNTFYLM 272 Query: 322 -DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIV 376 D D G++A + + + + LL + +DP+ ++ + + L Sbjct: 273 LDNDKQGIKAQEELYNKMKGLGL--KVEKTNLLGKYKDPNDYLVEDRNSFTKTLNH 326 >gi|259909531|ref|YP_002649887.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] gi|224965153|emb|CAX56685.1| DnaG primase-like protein [Erwinia pyrifoliae Ep1/96] Length = 947 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 53/316 (16%), Positives = 94/316 (29%), Gaps = 22/316 (6%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDF-------FHH 130 S +V RL AG P + L L + +H Sbjct: 1 MKTENFSLPRAVLRLREFAGHN-PSSSAAAVPASPPRQTLTDLDDDGQALLGQVVNGYHR 59 Query: 131 SLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLI 190 +L N+ + L + K + L + Sbjct: 60 NLLNSPEALAWLEKRGLNHPELVSHFKLGFAGAHGVAGLLPSVSSKEGKRLRDRLTLLGV 119 Query: 191 DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN 250 + + R + S G A GR L +S ++LY Sbjct: 120 LRGTTRQDHFRGCLVVPVVGWSESGN-AAQRGRVLQLYGRRTLTDSQIKKG--SARHLY- 175 Query: 251 FFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA--LTEYQLR 308 L + + +SS +IL E +D ++ AG +NV+++ G ++ Sbjct: 176 ----LPAPLVGVWNEQALKASSEVILCEALIDAMTFWCAGYRNVIAAFGANSFTADHLAA 231 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYG 367 L W R+++ FD D+ G R A G V G D +++ ++ Sbjct: 232 LRWHGVKRVLIAFDRDEAGDRGAEAVA---GELQQAGIDAWRVRFPLGLDANAYALKSGN 288 Query: 368 KTAFEKLIVESLPLVD 383 + L +ES + Sbjct: 289 PESAFALALESASRMH 304 >gi|307591335|ref|YP_003900134.1| DnaB domain-containing protein helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306986189|gb|ADN18068.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC 7822] Length = 735 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 15/146 (10%), Positives = 43/146 (29%), Gaps = 12/146 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P + L+ + ++ + E + RL Sbjct: 20 AEELILGGILFDPRAIARVADILSPEHFYVRAHATIYQTALEMYREGLPIDLMTVKHRLE 79 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E+G E + + R + ++ R R+ + + +I Sbjct: 80 EKGLLEQVGGICRLATLIERTVSAANIDV---------YAKNIVRKHWEKREIQALSHKI 130 Query: 603 AQVTAKGE---AEKTAILISILHEVH 625 + A+ ++++ ++ Sbjct: 131 NEWVEDPNYSPADIQELIVNQAQAIN 156 >gi|304373033|ref|YP_003856242.1| Replicative helicase DnaB [Mycoplasma hyorhinis HUB-1] gi|304309224|gb|ADM21704.1| Replicative helicase DnaB [Mycoplasma hyorhinis HUB-1] gi|330723353|gb|AEC45723.1| Replicative helicase DnaB [Mycoplasma hyorhinis MCLD] Length = 457 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 18/145 (12%), Positives = 54/145 (37%), Gaps = 3/145 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ ++ +P L+ + + +L+ +++ L K F + L Sbjct: 12 LEEKIISYILYYPNEWINIVNYLSIEDFTSAKLRIIFNALSDLMESTKTFDINLLINELS 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++ + L EA I++ + +A L K + + K+EI + Sbjct: 72 RTNKLQQAGG-EQYILSLSLDEYVVEAEIIEYIKKISEATKLRKILEIFEQSKKEISQ-- 128 Query: 603 AQVTAKGEAEKTAILISILHEVHIQ 627 + + ++ ++ + ++ + Sbjct: 129 GKKLSDDIIDEFQEKMNQIISINAK 153 >gi|188993921|ref|YP_001928173.1| probable conserved protein found in conjugate transposon TraP [Porphyromonas gingivalis ATCC 33277] gi|188995148|ref|YP_001929400.1| putative DNA primase involved in conjugation TraP [Porphyromonas gingivalis ATCC 33277] gi|188593601|dbj|BAG32576.1| probable conserved protein found in conjugate transposon TraP [Porphyromonas gingivalis ATCC 33277] gi|188594828|dbj|BAG33803.1| putative DNA primase involved in conjugation TraP [Porphyromonas gingivalis ATCC 33277] Length = 284 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 P+ E+TPSF + +K ++ F GD Sbjct: 35 PYRTERTPSFKVDTAKNVWFDFGTGKGGDIFD 66 >gi|296118478|ref|ZP_06837056.1| replicative DNA helicase [Corynebacterium ammoniagenes DSM 20306] gi|295968377|gb|EFG81624.1| replicative DNA helicase [Corynebacterium ammoniagenes DSM 20306] Length = 500 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 25/203 (12%), Positives = 74/203 (36%), Gaps = 14/203 (6%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL---REAALLLTLIN 493 + G G+ + ++ ++ +R + + ++P E +L ++ Sbjct: 22 PEPPESFDGPGQSFPRDNYGGGRRKYGKRDELENPQRYGEFRQPPSDKDAEQGVLGAMLL 81 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 P+ + E E+ + Q ++S + + + P + RL + + L+++ Sbjct: 82 SPSSVIEVIDEVDPEDFYYPAHQLIYSAMLDLYSDGTDIDPVIVSSRLDRQ---QNLERI 138 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE- 612 V L + A + A + L R+ + ++ Q+ G+ + Sbjct: 139 GGAVYLHTLLATVPTAAN-------ARYYAEIVAEKALLRKLVDAGTRVVQLGFNGDEDA 191 Query: 613 KTAILISILHEVHIQIHQIESQE 635 + ++ + + ++ Q ++ E Sbjct: 192 EIDAVLDLAQQEVFKVAQKKTTE 214 >gi|294778043|ref|ZP_06743477.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294448101|gb|EFG16667.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 318 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|229489904|ref|ZP_04383759.1| replicative DNA helicase [Rhodococcus erythropolis SK121] gi|229323200|gb|EEN88966.1| replicative DNA helicase [Rhodococcus erythropolis SK121] Length = 745 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 15/183 (8%) Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 + + P + G+ + E ++L ++ + + + L + Sbjct: 7 RGPSDFSGPDYPGPPEAEPDQEFGRQPPQDMTAEQSVLGGMLLSKDAIADVLEVLRPGDF 66 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 Q ++ + + + P + L RG +L R A L + T Sbjct: 67 YRPAHQSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAAYLVTLTQTVP 120 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVH 625 Y + +A + + R+ + +I Q + AE + + EV Sbjct: 121 TAANAAFYAEIVA----EKSVLRRLVDAGTRIVQYGYAGTEGQDVAEVVDRAQAEIFEVT 176 Query: 626 IQI 628 + Sbjct: 177 ERR 179 >gi|226309314|ref|YP_002769274.1| replicative DNA helicase [Rhodococcus erythropolis PR4] gi|226188431|dbj|BAH36535.1| replicative DNA helicase [Rhodococcus erythropolis PR4] Length = 468 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 15/183 (8%) Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 + + P + G+ + E ++L ++ + + + L + Sbjct: 7 RGPSDFSGPDYPGPPEAEPDQEFGRQPPQDMTAEQSVLGGMLLSKDAIADVLEVLRPGDF 66 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 Q ++ + + + P + L RG +L R A L + T Sbjct: 67 YRPAHQSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAAYLVTLTQTVP 120 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVH 625 Y + +A + + R+ + +I Q + AE + + EV Sbjct: 121 TAANAAFYAEIVA----EKSVLRRLVDAGTRIVQYGYAGTEGQDVAEVVDRAQAEIFEVT 176 Query: 626 IQI 628 + Sbjct: 177 ERR 179 >gi|168700158|ref|ZP_02732435.1| replicative DNA helicase [Gemmata obscuriglobus UQM 2246] Length = 460 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 54/160 (33%), Gaps = 7/160 (4%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S + +L + E +L ++ P L Q + + + QK++ + Sbjct: 2 SSDPLTDRLPPQNRDAERGVLGGILRDPDTLSTVQQHIIADNFYFDAHQKIYQAMSDLAT 61 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + ++ +L + + ++ + + LW A + + A+ Sbjct: 62 ENQPIDLVILYDKLRKN---KQIEDIGGKEYLVDLWEAVPTGANAEYHAKLVKDTAM--- 115 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R L EI + T G+ E + + EV Q Sbjct: 116 VRGLIHASNEILRDAYDRTQSGD-ELVSQAERKIMEVAKQ 154 >gi|325299575|ref|YP_004259492.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|324319128|gb|ADY37019.1| DNA primase [Bacteroides salanitronis DSM 18170] Length = 309 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 13/94 (13%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ IPI++ + Y ++ N W P +E SF N + +Y F Sbjct: 3 IEEAK-KIPITDYLHSLGYSPVKQQGANL-----WYKSPLREEHEASFKVNTEREQWYDF 56 Query: 66 SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA 96 G+ ++ L ++ + R+A A Sbjct: 57 GAGKGGNIIALAQELYCSDHLPYL--LNRIAEQA 88 >gi|261879033|ref|ZP_06005460.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334366|gb|EFA45152.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 326 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 12/136 (8%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 ++ L IPI++ + + K Y A P+ ++ S + + + + Sbjct: 20 LQHLKA-IPIADYLHTAYGIEPAKRYNGYALYHA--PYREDFNASMKVDFRENLCHDYGT 76 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAI---------AGVPLPVVDPKIEKKEKIQTDLI 118 G + + + GCS E+++ LA + + E++ + ++ Sbjct: 77 GQGGSIIDLVMRMQGCSAYEAMKHLAGKRETIVAPSTFHREDHIEHRRDEQRANNRRHIL 136 Query: 119 RLIEVATDFFHHSLKN 134 + + L+ Sbjct: 137 SISDELPSHLQRYLRE 152 >gi|154503554|ref|ZP_02040614.1| hypothetical protein RUMGNA_01378 [Ruminococcus gnavus ATCC 29149] gi|260589933|ref|ZP_05855846.1| DNA primase [Blautia hansenii DSM 20583] gi|153795654|gb|EDN78074.1| hypothetical protein RUMGNA_01378 [Ruminococcus gnavus ATCC 29149] gi|260539740|gb|EEX20309.1| DNA primase [Blautia hansenii DSM 20583] Length = 367 Score = 53.7 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 66/197 (33%), Gaps = 6/197 (3%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPF E + N K + C C G L L G S E+ +++ G Sbjct: 5 CPFCGETKGKMNVNLQKNVFRCNRCDASGGMLELYGRLHGVSSAEANRQIREALGKGEYR 64 Query: 103 VDPKIEKKEKI----QTDLIRLIEVATDFFHHSL-KNARDKRLHYYLDERGIDSHAIEMF 157 D ++ KE+ +L +V + L + + L +RG+ IE+ Sbjct: 65 TDYQVVHKEEPVEIFNAELADA-DVIDRTYQEMLSLLTLNDKHQEDLKKRGLTKEQIEIQ 123 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 + P + K + ++ + ++ PIRS G++ Sbjct: 124 RYRSVPLFGIKNMVQKLLESGQTVKGVPGFYEDQDGKWTINFTSKNSGILIPIRSVEGKI 183 Query: 218 IAFGGRTLSKGESVKYL 234 F R E KY+ Sbjct: 184 QGFQIRLDQVMEGRKYI 200 >gi|319639757|ref|ZP_07994487.1| DNA primase [Bacteroides sp. 3_1_40A] gi|317388574|gb|EFV69423.1| DNA primase [Bacteroides sp. 3_1_40A] Length = 318 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|237724861|ref|ZP_04555342.1| DNA primase PrmN1 [Bacteroides sp. D4] gi|229436599|gb|EEO46676.1| DNA primase PrmN1 [Bacteroides dorei 5_1_36/D4] Length = 318 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|208429910|ref|YP_002265463.1| hypothetical protein 39-O_gp55 [Clostridium phage 39-O] gi|190683393|gb|ACE82037.1| hypothetical protein [Clostridium phage 39-O] gi|327492249|gb|AEA86270.1| CHC2 zinc finger protein [Clostridium phage CP26F] Length = 322 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGF 61 Y + + L+ I + + I +++ + + +Y C H + + ND KG Sbjct: 217 YKEECLNRLISSISLKDFIQKHLGGE---FKYMNDNYIGRCVLHGGDNKGALVINDDKGI 273 Query: 62 YYCFS-CHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVV 103 Y CF+ C G+ +S + G + F + LA + +P Sbjct: 274 YTCFTHCG-TGNLISVAKKVYGITNFSKIAFMLAQEYNLNIPEE 316 >gi|300776501|ref|ZP_07086359.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300502011|gb|EFK33151.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 278 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + ++ I ++ Y K N Y+A EKT S + K + F Sbjct: 4 EQIKQNVSIRTVMESY-GLFPVKENKRTAFYFAL--DRQEKTASLSVDFIKNTAFDFGTG 60 Query: 69 VKGDHLSFLSALLGCSFIESVQRL 92 D +S + A+ C+ +++ L Sbjct: 61 KIYDVISIVQAINKCNVSTALEYL 84 >gi|303239067|ref|ZP_07325597.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2] gi|302593405|gb|EFL63123.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2] Length = 863 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 79/207 (38%), Gaps = 2/207 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++ + + +++ + ++ + ++A++ + Sbjct: 321 YRKYIEKDAALERRFQPIVVDQPTVEDTISILRGLKERFEIHHGVRITDSAIIACSVLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + + + + S E + + + + + R Sbjct: 381 RYISDRFLPDKAIDLMDEAAAMIRTEIDSMPTELDEIQRRIMQLEIERQALKKEEDEASR 440 Query: 556 QVRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + ++ D ++ ++ KR + L Q EE+++QI + + +K Sbjct: 441 ERLSTLEKEISSLKEKSDGMKAQWEMEKENIKREKELKEQIEEVKRQIEEAERSYDLDKL 500 Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEG 640 A+L L E+ + + + ++ EG Sbjct: 501 AVLKHGRLPELQRSLEEEKQRKKSNEG 527 >gi|301165046|emb|CBW24614.1| putative transposon-related/mobilisation protein [Bacteroides fragilis 638R] Length = 318 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|58616337|ref|YP_195467.1| hypothetical protein p1B257 [Azoarcus sp. EbN1] gi|56315799|emb|CAI10443.1| hypothetical protein p1B257 [Aromatoleum aromaticum EbN1] Length = 457 Score = 53.7 bits (127), Expect = 9e-05, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 10/165 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S++ + G L E L+ L+ + + + + ++ + Sbjct: 2 SRKDNTPPVQPGVLPPHSIPAEQGLIGGLLLDNQFFDRVIDVVKVQHFYDQAHRLIYQAM 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 F + + K + L +G L++ A L A Y + + Sbjct: 62 FDLYAQNKAVDLITVADSLAAKG------TLEQAGGFAYLAEVANGAISTAAISSYAKII 115 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R + + R +I Q +K ++ + ++ Sbjct: 116 ----RSKAVLRHLGAACNRILQTIHDPGTKKAEEILDEAEALMLR 156 >gi|254420566|ref|ZP_05034290.1| hypothetical protein BBAL3_2876 [Brevundimonas sp. BAL3] gi|196186743|gb|EDX81719.1| hypothetical protein BBAL3_2876 [Brevundimonas sp. BAL3] Length = 406 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 17/111 (15%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-----S-FHCNDSKGFY--Y 63 + + + G+YV N CP+ K S F +K + Y Sbjct: 10 KREVSLDAVAGRYVKLRGPDNNRRGA-----CPWCFPKRALAGGGSTFQAKLTKRTWRTY 64 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 C C GD + + + +E+V+ LA LP P+ + + Sbjct: 65 C--CGKFGDVVDLYCEMERKTPVEAVRDLAGST--ALPAPRPRAQPASPEK 111 >gi|196047978|ref|ZP_03115156.1| replicative DNA helicase [Bacillus cereus 03BB108] gi|196021234|gb|EDX59963.1| replicative DNA helicase [Bacillus cereus 03BB108] Length = 445 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 12/154 (7%) Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--- 534 E +L +++ ++++ + L + + Q ++ + S F E Sbjct: 9 PNYIEAEKMILGSILQEQELIEKVQEVLVVKDFYHINHQYIYEIMLSLFEENNPIDIISV 68 Query: 535 ------EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--LYK 586 + + + ELL + + + E+ Q++A Y Sbjct: 69 TGQVQDKNLIDNIPPSYLAELLDTVHSTNGISYYINLVKESAGKRNLHRIAQSIANDAYN 128 Query: 587 RFRLLSRQKEEIEKQIAQ-VTAKGEAEKTAILIS 619 + L + + + +A+ ++G ++ + Sbjct: 129 SDKDLDKIINQAGEDLAKVSDSQGRDDRMRSAME 162 >gi|270294843|ref|ZP_06201044.1| DNA primase [Bacteroides sp. D20] gi|270274090|gb|EFA19951.1| DNA primase [Bacteroides sp. D20] Length = 318 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|71906859|ref|YP_284446.1| primary replicative DNA helicase [Dechloromonas aromatica RCB] gi|71846480|gb|AAZ45976.1| primary replicative DNA helicase [Dechloromonas aromatica RCB] Length = 469 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 50/157 (31%), Gaps = 6/157 (3%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 +Q+ R+ S+L ++ E ++L L+ L D + +E ++ Sbjct: 2 NQRPQKPRIPDSTLDHLRVPPHSIEAEQSILGGLLLDNQAWDRMGDMLTDADFYRDEHRR 61 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANI 571 ++ + + + K + + L G GE L +L A E Sbjct: 62 IFRQIRNLLEKAKPADVVTVAEALDAAGEGEQTGGLAYLGELAANTPSAANIKRYAEIVR 121 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 A A L+ + E + + +K Sbjct: 122 ERSVLRQLVATADEIAADALNPLGRDAETLLDEAESK 158 >gi|227502167|ref|ZP_03932216.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725] gi|306834724|ref|ZP_07467791.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726] gi|227076991|gb|EEI14954.1| replicative DNA helicase [Corynebacterium accolens ATCC 49725] gi|304569395|gb|EFM44893.1| replicative DNA helicase DnaB [Corynebacterium accolens ATCC 49726] Length = 477 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 56/183 (30%), Gaps = 13/183 (7%) Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 E NA R + + + + S + E +L ++ P + E Sbjct: 9 EQLPPEPPAPDNAVARRPRYQQDQPQRYEEYRQPPSDRE--AEQGVLGAMLLSPNTVMEV 66 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 +EL + ++ + + + P + RL L+R Sbjct: 67 IEELEPDDFYYPAHALIYGAMLDLYAAGQDIDPLILSSRLDR------FNNLERVGGAPY 120 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISI 620 L + + Y + +A + + R+ + ++ Q+ G E + +I Sbjct: 121 LHTLLATVPTAANARYYAEIVA----EKAVLRRLVDAGTRVVQLGFSGTEDAEIESVIDR 176 Query: 621 LHE 623 + Sbjct: 177 AQQ 179 >gi|46199013|ref|YP_004680.1| hypothetical protein TTC0705 [Thermus thermophilus HB27] gi|46196637|gb|AAS81053.1| conserved hypothetical protein [Thermus thermophilus HB27] Length = 411 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 12/212 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSL 482 I RL+ L + R + R + + + ++ + + +K +L Sbjct: 55 LAQISQRLKNLLGEKAALEKEIARLEAERRRLKQETARLKEEVRQTEARIAKLEKDLEAL 114 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 RE L + H L + + + + Q L + + L Sbjct: 115 RERLQALMVSLHRERAGRYLPLLRAESFTD---LAVRARWVGYISRQDTALVKTLQATLK 171 Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 R L+ L + + A T+ + R+G + LA +R + + + Sbjct: 172 ALREEKARLELLVQSLTAKEAELAETQQALEAKRRGLEAVLAELRREEAGKKALLRDALE 231 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + AQ+ + + A L L E ++ ++ Sbjct: 232 ERAQLQS-----RLAELQKRLLEERQRLKALQ 258 >gi|52842291|ref|YP_096090.1| hypothetical protein lpg2077 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629402|gb|AAU28143.1| TraI [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 1981 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 46/415 (11%), Positives = 119/415 (28%), Gaps = 34/415 (8%) Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV-PLPVVDPKIEKKEKIQTD 116 KG ++ FS + G + + A SF E++ + A++ G+ L + I+ + + Sbjct: 1589 DKGLWHDFSDGIGGAPIQAIIARDKLSFKEALSQAASMVGINQLENLSIFIKAPISSKNE 1648 Query: 117 LIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 L +L ++ + + +A+ L + + ++ + + D + Sbjct: 1649 LQKLNDLEKK---NKVISAKSIWDGSILAKGTLAEKYLKQHRGIESIDKMDIRFWPTGSQ 1705 Query: 177 GFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNS 236 + + ++ I + + G + + + N Sbjct: 1706 WKNCNEQGLLEDKVNKIP------------ALIIAARNEKNELTGVQRIYLDKQTASKN- 1752 Query: 237 PETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS 296 K + N + + S + S + + EG+ S+ A + V Sbjct: 1753 ---------KFMDNPKLSKGIIDGSCGVIQKGMQGSRLYIAEGFETGASIALADSKATVL 1803 Query: 297 SLGTALTEYQLRLL--WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 L + S +V+ D D ++ + V Sbjct: 1804 CSFGVSNMKNLSPIIKKFHSKEVVIAGDNDGEFAKSQQAIEKTINAFKQDNLSARAVFPD 1863 Query: 355 R--GE---DPDSFIRCYGKTAFEK-LIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 G+ D + G +K L+ + + + + + E + + Sbjct: 1864 GLQGKAKTDWNDIHLSKGIAEIQKQLMRKDIGAISSIVDKPIELPKTIADFVQIKSMKLS 1923 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + I I+D + + + + +K + + Sbjct: 1924 GSQIISIRDNAATIDNKRDLNQLVAAYNKSQQALEKSGSFTPEKTLPTKTRSEIE 1978 >gi|189220414|ref|YP_001941054.1| Replicative DNA helicase [Methylacidiphilum infernorum V4] gi|189187272|gb|ACD84457.1| Replicative DNA helicase [Methylacidiphilum infernorum V4] Length = 472 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 23/179 (12%) Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E A+L + +P + + +A + + L+ L + +HQ L Sbjct: 25 AEKAILGLALTNPELVFDRIRERIAADDFYVPSHRLLFEVLCDMHSKSIPIDLTTVHQYL 84 Query: 542 CERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-----ALALYKRFR 589 + E L + L S V + Q ++Y+ Sbjct: 85 IDHHLEEKMGGAVLLADLVASFATHLNLESYIKILKDKSVLRKLHQVALNIVQSIYENSH 144 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + ++ EK+I ++T + T + E+ I +I+ F K GRL Sbjct: 145 SVIQVLDQAEKEIFEIT---DLTITRSTVKASIEIEKAIE-------LIDCFHKRKGRL 193 >gi|74180977|dbj|BAE27768.1| unnamed protein product [Mus musculus] Length = 2031 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ + E E ++ ELE + +++++ Sbjct: 941 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 1000 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 1001 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 1060 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E L + + L KL + +D E ++ Sbjct: 1061 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1114 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 1115 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1171 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + + ++ ++ ++++ Sbjct: 1172 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1218 Score = 38.3 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + ++ + + +R+ +L + K +D + ++ K Sbjct: 1650 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1709 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +K + + L + + LA + + +L+ + + + E Sbjct: 1710 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1766 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + EL ++ L + Q ++ L++ + Sbjct: 1767 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1823 Query: 596 EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633 ++ QI Q+ E++ L E+ ++ ++ES Sbjct: 1824 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1870 >gi|297544923|ref|YP_003677225.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842698|gb|ADH61214.1| regulatory protein DeoR [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 675 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 89/388 (22%), Gaps = 64/388 (16%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 C +HD++ PS N GFY C C FL + G+ Sbjct: 45 CLYHDDRKPSATVNIKSGFYVCHVCG-SFSPYRFLVEI---------------VGIAPED 88 Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 +L E + H + I+ K Sbjct: 89 ASYF---INDYLRELYVKDERTGRYIHAFPHYDPSHTYIPTPGQEEEFEEFIKEAKARLR 145 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 P+ + E + D + RG++ A G Sbjct: 146 PELPIVQEYITARGIKYEMLERFEWGYVPHDEETGQVECL-----VVPFRVRGKIRAIRG 200 Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 R GA+ + S+ S ++VEG D Sbjct: 201 RAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESD 237 Query: 283 VL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338 L +L GV V S+ + + + + L DD AI ++ Sbjct: 238 ALRTIQALEACGVDIPVVSVPGNNFRKEWKREFDGIRTVYLIPQDDDASANFVRSAIAVL 297 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G+D ++ D Sbjct: 298 GEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLEEHQDR 344 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQ 426 R L D +R ++ Sbjct: 345 FSRYYRVEELLKREPAEPDWLVRGMIAR 372 >gi|54307153|ref|YP_133704.1| PrmN1 [Bacteroides uniformis] gi|160887899|ref|ZP_02068902.1| hypothetical protein BACUNI_00303 [Bacteroides uniformis ATCC 8492] gi|218131380|ref|ZP_03460184.1| hypothetical protein BACEGG_02995 [Bacteroides eggerthii DSM 20697] gi|237717335|ref|ZP_04547816.1| DNA primase [Bacteroides sp. D1] gi|262406100|ref|ZP_06082650.1| PrmN1 [Bacteroides sp. 2_1_22] gi|8308028|gb|AAF74445.1|AF238307_9 PrmN1 [Bacteroides uniformis] gi|156862585|gb|EDO56016.1| hypothetical protein BACUNI_00303 [Bacteroides uniformis ATCC 8492] gi|217986312|gb|EEC52649.1| hypothetical protein BACEGG_02995 [Bacteroides eggerthii DSM 20697] gi|229443318|gb|EEO49109.1| DNA primase [Bacteroides sp. D1] gi|262356975|gb|EEZ06065.1| PrmN1 [Bacteroides sp. 2_1_22] Length = 318 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I++ I I++ + Y ++ N W PF +E SF N + +Y Sbjct: 2 TIEEAKS-IRIADYLHSLGYSPVKQQGINL-----WYKSPFREESEASFKVNTEREQWYD 55 Query: 65 FSCHVKGDHLSF---LSALLGCSFIESVQRLAAI 95 F G+ ++ L A +I ++R+A Sbjct: 56 FGLGKGGNIIALAAHLYATDHVPYI--LKRIAEQ 87 >gi|70732302|ref|YP_262058.1| hypothetical protein PFL_4979 [Pseudomonas fluorescens Pf-5] gi|68346601|gb|AAY94207.1| conserved domain protein [Pseudomonas fluorescens Pf-5] Length = 991 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 6/93 (6%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEK-TPSFHCNDSKGFYYCFS 66 D+ I ++ ++ K +Y A P +K T S N SKG + F+ Sbjct: 43 DVKSAALKDIDRVLAHWLP--NGKRVDGGKEYTAPNPTRTDKRTGSLKVNLSKGTWADFA 100 Query: 67 CH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 GD + + L G + +E+ +LA + V Sbjct: 101 TGDKGGDLIDLVRYLDGGTDVEACNKLADLLSV 133 >gi|55981039|ref|YP_144336.1| hypothetical protein TTHA1070 [Thermus thermophilus HB8] gi|55772452|dbj|BAD70893.1| conserved hypothetical protein [Thermus thermophilus HB8] Length = 411 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 12/212 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK--PSL 482 I RL+ L + R + R + + + ++ + + +K +L Sbjct: 55 LAQISQRLKNLLGEKAALEKEIARLEAERRRLKQETARLKEEVRQTEARIAKLEKDLEAL 114 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 RE L + H L + + + + Q L + + L Sbjct: 115 RERLQALMVSLHRERAGRYLPLLRAESFTD---LAVRARWVGYISRQDTALVKTLQATLK 171 Query: 543 E-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 R L+ L + + A T+ + R+G + LA +R + + + Sbjct: 172 ALREEKARLELLVQSLTAKEAELAETQRALEAKRRGLEAVLAELRREEAGKKALLRDALE 231 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + AQ+ + + A L L E ++ ++ Sbjct: 232 ERAQLQS-----RLAELQKRLLEERQRLKALQ 258 >gi|296411052|ref|XP_002835249.1| hypothetical protein [Tuber melanosporum Mel28] gi|295628024|emb|CAZ79370.1| unnamed protein product [Tuber melanosporum] Length = 2201 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 17/253 (6%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 M+ +R + +L + +K + + I+ + + Sbjct: 715 MIIQRNLQVYLDLCESPWWKLFMKMKPLLGATHSSSEVKKRDEMIQKMEAHMQAEAENRQ 774 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500 K +A + + +L K ++ K+ REA L L ++ +L++ Sbjct: 775 RLEEERRKADAELHKVQKTLESERALALDKEEIFKRMQQREAELSEKLAGALDDQDVLED 834 Query: 501 QYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 Q EL + + + + + L ++ +L + E+ +L+ R+ Sbjct: 835 QIDELMSAKKKADEQAEAWRKELEQA---------GDLIAKLEDEKH-EMAARLEFLDRE 884 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEKTAILI 618 + A D +Q + L K L R+ + E+ + + + + + + + Sbjct: 885 LEA-AEKQRAERGDAEDRLEQEVHLLKSHLALKERKIHDYEEALRKSDHELDEKLSQTNL 943 Query: 619 SILHEVHIQIHQI 631 S L E QI ++ Sbjct: 944 S-LQEGQKQIREL 955 >gi|241680853|ref|XP_002411576.1| transcription initiation factor TFII-D subunit 4B, putative [Ixodes scapularis] gi|215504312|gb|EEC13806.1| transcription initiation factor TFII-D subunit 4B, putative [Ixodes scapularis] Length = 453 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 53/139 (38%), Gaps = 8/139 (5%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + N +++ S +E+ + + L+++L V + L + Sbjct: 244 ENFLFTNPLQRRITSVAVKYGIEEIPSDVVALISHATQERLKSLVQKL-GIVAEHRLENI 302 Query: 566 TTEANIV-----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +++ + + + L ++ R Q+ EI + A+ +K E + L Sbjct: 303 KSDSRYEVTQDVKAQLKFLEELDRLEKKRH-EEQEREILLRAAKSRSKMEDPEQLKLKQK 361 Query: 621 LHEVHI-QIHQIESQEAMI 638 E+ ++ ++ +EA + Sbjct: 362 AKEMQKAEMEEMRQREANM 380 >gi|288925609|ref|ZP_06419541.1| mobilizable transposon, excision protein [Prevotella buccae D17] gi|288337547|gb|EFC75901.1| mobilizable transposon, excision protein [Prevotella buccae D17] Length = 281 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 16/32 (50%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 P+ E+TPSF + +K ++ F GD Sbjct: 35 PYRTERTPSFKVDTAKNVWFDFGTGKGGDIFD 66 >gi|229822649|ref|YP_002884175.1| replicative DNA helicase [Beutenbergia cavernae DSM 12333] gi|229568562|gb|ACQ82413.1| replicative DNA helicase [Beutenbergia cavernae DSM 12333] Length = 457 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 47/157 (29%), Gaps = 10/157 (6%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + + E + L ++ + + + L + + ++ + + Sbjct: 6 AEPRSDFDRTPPQDVAAEQSALGGMLLSKDAIADVVEVLRAQDFYRPAHEMVYEAILDLY 65 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L +RG LL ++ L SA A A Sbjct: 66 GRGQPTDAITVSDELTKRG---LLARVGGSAYLHTLISAVPTAAN-------AGYYARIV 115 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 R R + R+ E +I Q+ + L++ Sbjct: 116 RERSVLRKLVEAGTRIVQLGYATDGGDVDELVNTAQA 152 >gi|332668584|ref|YP_004451591.1| replicative DNA helicase [Cellulomonas fimi ATCC 484] gi|332337621|gb|AEE44204.1| replicative DNA helicase [Cellulomonas fimi ATCC 484] Length = 459 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 52/173 (30%), Gaps = 14/173 (8%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P + + + E ++L ++ + + +++ + + ++ Sbjct: 10 APPDSGRGGNGGFDRTPPQDLEAERSVLGGMMISKDAIADVIEQIKGTDFYRPAHEAVYD 69 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L +RG + ++ L S+ A Sbjct: 70 AILDLYGRGEPADAITVADELTKRG---EIGRIGGAPYLHTLISSVPTAAN-------AG 119 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIH 629 A R R + R+ E +I Q+ + E + ++ V + Sbjct: 120 YYARIVRERAILRKLVEAGTRIVQLGYGTDGGDVDEIVNNAQAEVYAVTERRA 172 >gi|212702691|ref|ZP_03310819.1| hypothetical protein DESPIG_00719 [Desulfovibrio piger ATCC 29098] gi|212673851|gb|EEB34334.1| hypothetical protein DESPIG_00719 [Desulfovibrio piger ATCC 29098] Length = 551 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 21/84 (25%) Query: 33 NAVKGDYWACCPFHDE---KTPSFHCNDS--------------KGFYYCFSCHVKGDHLS 75 G + CP K+ F KG + C C GD ++ Sbjct: 16 KRQGGAWNGPCPLCGGEPGKSDRFMIWPDRAENLGEVCAQNGLKGIWSCRQCGASGDTIA 75 Query: 76 FLSALLGCSFIESVQRLAAIAGVP 99 +L+ + G F ++ L G+ Sbjct: 76 YLTKVEGMDFKTALAEL----GIE 95 >gi|302339365|ref|YP_003804571.1| replicative DNA helicase [Spirochaeta smaragdinae DSM 11293] gi|301636550|gb|ADK81977.1| replicative DNA helicase [Spirochaeta smaragdinae DSM 11293] Length = 444 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 7/157 (4%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S +K K+ S EAA L ++ P + + L + + + ++S + S F Sbjct: 2 NSPSLKDKVPPHNSEAEAATLGAMLLDPEAVGIVLRHLRPEDFYSGYNRNIYSAILSLFN 61 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + + L G +L+ + + T+ + Y + + Sbjct: 62 KGQEVDLITLTDELRATG------KLEASGGASYATTLTSVVPTSANVEYYAKIVKDSSI 115 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 R L + E+ Q + + E + ++ Sbjct: 116 RRSLLKIAAELTSQ-SHDESIDSRELIEEAERKIFDI 151 >gi|297193327|ref|ZP_06910725.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197718355|gb|EDY62263.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 492 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 26/230 (11%), Positives = 66/230 (28%), Gaps = 30/230 (13%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 ++ R R+ G V + E ++L ++ Sbjct: 17 GDRLPASRQRRHEGRGREDQHDRGRESGGWDGGSPGFERVPPQDLD----AEQSVLGGML 72 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + + + + + + ++ + + + + P + L +RG + Sbjct: 73 LSKDAIADVVEIIKGHDFYRPAHETVYQAILDLYAKGEPADPITVAAELVKRG------E 126 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610 + R L + Y + + R + R+ E +I Q+ + Sbjct: 127 ITRVGGAPYLHTLVQSVPTAANASYYAEIVH----ERAVLRRLVEAGTKITQMGYAADGD 182 Query: 611 -AEKTAILISILHEVHIQI-------------HQIESQEAMIEGFGKMSG 646 E + ++ V Q ++ EA+ G+M+G Sbjct: 183 VDEIVNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGEMTG 232 >gi|160934644|ref|ZP_02082030.1| hypothetical protein CLOLEP_03517 [Clostridium leptum DSM 753] gi|156866097|gb|EDO59469.1| hypothetical protein CLOLEP_03517 [Clostridium leptum DSM 753] Length = 386 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 43/356 (12%), Positives = 98/356 (27%), Gaps = 32/356 (8%) Query: 41 ACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSALL----GCSFIESVQRLAA 94 A CP+ + + + K ++C +C G+ ++ + + E+ L Sbjct: 34 ARCPYCGDYKYRMYLSRQPEKSTFWCHNCGTGGNAVTLYADFNPGGRRLTTKEAYLEL-- 91 Query: 95 IAGVPLPVVDPKIEKKEKIQ---TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDS 151 + P V E + + L E + + +++ L RG+ Sbjct: 92 ---LDHPQVHTGESPYEHDRYIPEPIRPLHERSQIYLELLSLLTLEEKHRQNLLRRGLSD 148 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 I P + R+ + + S + + + ++ P+ Sbjct: 149 EIIRGNMYRSIPTNWKQRRQAVE-QLASRYDLSGMPGFYTRNFRWDLSSCRYSGILIPVC 207 Query: 212 SSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 ++ R L + T KG+ K ++ SS Sbjct: 208 DKDSRIQGLQLR-LDEPPPKTITLPDGTKATKKGERFRWLSTGGMSNGKKFYENGTGISS 266 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSL------------GTALTEYQLRLLWKLSPRIVL 319 ++ + D L + + ++ ++S + + RI+ Sbjct: 267 YIHVVGDLSCDTLHITEGAMKADIASFLSGGELFIGLTGVQNTRYLEDVVRQLKPKRILE 326 Query: 320 CFDGD----DPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF 371 C D D RA K + + + +G D + Sbjct: 327 CVDMDCRTNPHVQRAQAKIRAICTPLCEEYRLFTWPVEQKGIDDYLLFEKLKREHL 382 >gi|306778879|ref|ZP_07417216.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu002] gi|306787034|ref|ZP_07425356.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu004] gi|306791592|ref|ZP_07429894.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu005] gi|308328208|gb|EFP17059.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu002] gi|308336326|gb|EFP25177.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu004] gi|308339929|gb|EFP28780.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu005] Length = 874 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|289760156|ref|ZP_06519534.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis T85] gi|289715720|gb|EFD79732.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis T85] Length = 461 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|289747827|ref|ZP_06507205.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis 02_1987] gi|289688355|gb|EFD55843.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis 02_1987] Length = 347 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|289552307|ref|ZP_06441517.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 605] gi|289436939|gb|EFD19432.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 605] Length = 360 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|289445584|ref|ZP_06435328.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CPHL_A] gi|289418542|gb|EFD15743.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CPHL_A] Length = 772 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|288962768|ref|YP_003453062.1| replicative DNA helicase [Azospirillum sp. B510] gi|288915034|dbj|BAI76518.1| replicative DNA helicase [Azospirillum sp. B510] Length = 501 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 24/179 (13%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 + + P + + E ALL ++ + ++ + L + + Sbjct: 2 SNQTSSLFDPRPSSAVKPTAEYRTPPNNEEAEQALLGAILVNNKAYEKVGEFLRPEHFYD 61 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQ------RLCERGFGELLKQLD------------ 554 Q++++ + + P + L G L +L Sbjct: 62 PAHQRIFAAINKMIDRGQIANPVTLKSLFDNDPELAVEGGSAYLAELAANVVTVVNAADY 121 Query: 555 -RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + D + E V + Y+ L + Q E EKQ+ + + G+ + Sbjct: 122 GKTIHDLFIRRQLIEVGTDMVNEAYRHDLDV-----TALDQIGEAEKQLFDLASTGDVQ 175 >gi|288572894|ref|ZP_06391251.1| replicative DNA helicase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568635|gb|EFC90192.1| replicative DNA helicase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 451 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 50/158 (31%), Gaps = 18/158 (11%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S + ++ + E A++ + + +L + + L+ + + Q + L + Sbjct: 2 SPSIYDRVPPQNLEAERAVIGSCLMDKDVLIQISEILSPEDFRDKNYQVAFDVLTDMVHQ 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L RG E L Q + + A + + A+ +R Sbjct: 62 DRPVDSLTFLEELSRRGLSE---SLGGQAFIVAVMDSVPTAANAEYHAKIVRDKAVLRRL 118 Query: 589 ---------------RLLSRQKEEIEKQIAQVTAKGEA 611 R + EE E+ I +V+ Sbjct: 119 ISTGTSIARMGYSEDREIDELLEEAERAIFEVSRHRNE 156 >gi|215432966|ref|ZP_03430885.1| replicative DNA helicase [Mycobacterium tuberculosis EAS054] gi|289756117|ref|ZP_06515495.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis EAS054] gi|289696704|gb|EFD64133.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis EAS054] Length = 268 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|189095961|pdb|2R5U|A Chain A, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis gi|189095962|pdb|2R5U|B Chain B, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis gi|189095963|pdb|2R5U|C Chain C, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis gi|189095964|pdb|2R5U|D Chain D, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis gi|189095965|pdb|2R5U|E Chain E, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis gi|189095966|pdb|2R5U|F Chain F, Crystal Structure Of The N-Terminal Domain Of Dnab Helicase From Mycobacterium Tuberculosis Length = 200 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 11 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 70 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 71 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 120 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 121 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 176 >gi|254366516|ref|ZP_04982560.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis str. Haarlem] gi|134152028|gb|EBA44073.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis str. Haarlem] Length = 874 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|83319407|ref|YP_424099.1| replicative DNA helicase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283293|gb|ABC01225.1| replicative DNA helicase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 442 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 59/167 (35%), Gaps = 14/167 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ L + L + + ++ + + K P + RL Sbjct: 13 AERFVLGVAMSFSNALADIISVLKVDDFSIEANKYIYQAIIDLNSKNKSVSPISVINRL- 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + +LDR D ++ E + Y + R L +E+E + Sbjct: 72 -----EAINKLDRVGGDVVVYEIAAENYTDQGLEEYIDVIHKSGVIRKLDAVIKELE--L 124 Query: 603 AQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + + + ++ + L ++ + I + E IE G ++ R+ Sbjct: 125 KRNSGNTDIDELLKVAQTKLLDIDLSIKRFE-----IEAVGDVAKRV 166 >gi|15607200|ref|NP_214572.1| replicative DNA helicase [Mycobacterium tuberculosis H37Rv] gi|148659818|ref|YP_001281341.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra] gi|167970584|ref|ZP_02552861.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra] gi|306974469|ref|ZP_07487130.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu010] gi|307082177|ref|ZP_07491347.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu011] gi|307082517|ref|ZP_07491630.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu012] gi|3915677|sp|P71715|DNAB_MYCTU RecName: Full=Replicative DNA helicase; Contains: RecName: Full=Endonuclease PI-MtuHIP; AltName: Full=Mtu dnaB intein gi|3250719|emb|CAB02519.1| PROBABLE REPLICATIVE DNA HELICASE DNAB [Mycobacterium tuberculosis H37Rv] gi|148503970|gb|ABQ71779.1| replicative DNA helicase [Mycobacterium tuberculosis H37Ra] gi|308356253|gb|EFP45104.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu010] gi|308360243|gb|EFP49094.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu011] gi|308367743|gb|EFP56594.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu012] Length = 874 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|15839435|ref|NP_334472.1| replicative DNA helicase [Mycobacterium tuberculosis CDC1551] gi|31791235|ref|NP_853728.1| replicative DNA helicase [Mycobacterium bovis AF2122/97] gi|121635968|ref|YP_976191.1| replicative DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821248|ref|YP_001286002.1| replicative DNA helicase [Mycobacterium tuberculosis F11] gi|224988441|ref|YP_002643108.1| replicative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253796973|ref|YP_003029974.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 1435] gi|254233457|ref|ZP_04926783.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis C] gi|297632528|ref|ZP_06950308.1| replicative DNA helicase [Mycobacterium tuberculosis KZN 4207] gi|297729499|ref|ZP_06958617.1| replicative DNA helicase [Mycobacterium tuberculosis KZN R506] gi|306782668|ref|ZP_07420990.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu003] gi|306801630|ref|ZP_07438298.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu008] gi|306805839|ref|ZP_07442507.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu007] gi|306970236|ref|ZP_07482897.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu009] gi|313656828|ref|ZP_07813708.1| replicative DNA helicase [Mycobacterium tuberculosis KZN V2475] gi|38257379|sp|P59966|DNAB_MYCBO RecName: Full=Replicative DNA helicase; Contains: RecName: Full=Endonuclease PI-MboHIP; AltName: Full=Mbo dnaB intein gi|13879107|gb|AAK44286.1| replicative DNA helicase, intein-containing [Mycobacterium tuberculosis CDC1551] gi|31616820|emb|CAD92921.1| PROBABLE REPLICATIVE DNA HELICASE DNAB [Mycobacterium bovis AF2122/97] gi|121491615|emb|CAL70073.1| Probable replicative dna helicase dnaB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124603250|gb|EAY61525.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis C] gi|148719775|gb|ABR04400.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis F11] gi|224771554|dbj|BAH24360.1| replicative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] gi|253318476|gb|ACT23079.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 1435] gi|308332515|gb|EFP21366.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu003] gi|308347729|gb|EFP36580.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu007] gi|308351646|gb|EFP40497.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu008] gi|308352353|gb|EFP41204.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis SUMu009] gi|323717397|gb|EGB26602.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis CDC1551A] gi|326905818|gb|EGE52751.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis W-148] gi|328456763|gb|AEB02186.1| replicative DNA helicase dnaB [Mycobacterium tuberculosis KZN 4207] Length = 874 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 16/176 (9%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG LL+++ L S A Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AG 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + L R+ E ++ Q AE + +++V ++ + Sbjct: 118 YYASIVAEKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 173 >gi|227506316|ref|ZP_03936365.1| replicative DNA helicase [Corynebacterium striatum ATCC 6940] gi|227197128|gb|EEI77176.1| replicative DNA helicase [Corynebacterium striatum ATCC 6940] Length = 478 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 53/201 (26%), Gaps = 7/201 (3%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 A+ +++ + + + E +L ++ P + E +EL + Sbjct: 20 PAQEERPYRRNRQDVSKRYGEFRQPPSDREAEQGVLGAMLLSPNTVMEVIEELEPDDFYY 79 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSA 565 ++ + + + RL E L L A Sbjct: 80 PAHALIYQAMVDLYAAGTDIDAVIVASRLDRYNNLERVGGAPYLHTLLATVPTAANARYY 139 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 V + A + + EIE + + + A + Sbjct: 140 AEIVAEKAVLRKLVDAGTRVVQLGFEGAEDAEIESVLDRAQQEVFAVAQKKTTEDYQVLG 199 Query: 626 IQIHQIESQEAMIEGFGKMSG 646 I + AM++ G +G Sbjct: 200 KLIDPTIDELAMLQQNGIEAG 220 >gi|218296446|ref|ZP_03497189.1| SMC domain protein [Thermus aquaticus Y51MC23] gi|218243240|gb|EED09771.1| SMC domain protein [Thermus aquaticus Y51MC23] Length = 962 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 73/227 (32%), Gaps = 27/227 (11%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + R+ L K AR + ++ L ++ K + R Sbjct: 238 ELLRRMALLEAKRERLTKEASEMENLRARLALSEEAARALPLWEDLRRKEGALAATRAR- 296 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L ++ + L + +D LQ+ L Q E + +R+ Sbjct: 297 ----LKEAEGAVKGLEEALKALAFDEGALQEARDALLKA---QGLRALEALLRRVG--PL 347 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 +LD + +A L EA + + G Q +R + Q EE +++A+ Sbjct: 348 DHPAPRLDPERLEAVLE---EEAKLERLLSGLSQLEEARRRLKAKEDQLEEARQRLAKTE 404 Query: 607 AKGEAEKTA--------------ILISILHEVHIQIHQIESQEAMIE 639 G ++ L L + ++ +E +EA ++ Sbjct: 405 EAGREKRKEVEDLKVRLQGAEAHRLQERLKALEEELRSLEKEEAGLK 451 Score = 42.6 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 75/234 (32%), Gaps = 20/234 (8%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + R +L + G AR +K + L K E Sbjct: 495 LPDLEARRWELEEALR-RVQGRRGEVLGEARSLKEKLDTLAAEPVPGDPEALKKALEEAE 553 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-----------FSDFVEQKYFL 533 AL + I E + ++ E ++L + E+K L Sbjct: 554 EALQALRDTYKEIGGEIKGLVEEVNQLRQEEERLRAQAGEASLGEVEEGLRRLREEKAAL 613 Query: 534 PEEIHQRLCER----GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + Q + ER G LK+L+ +VR + Q+ AL + Sbjct: 614 GAGLRQHIQERTEGLGVAAYLKRLEARVRALEAQEREYRRLRDRMADLAQKVSALKAQEA 673 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQEAMIE 639 ++ E E+++ + + EA A+ + +I + ++ EA+++ Sbjct: 674 EQAKALAEAEERVKGLMPEAEARAHALSPEEREALETRIRRHENELKDVEALLK 727 >gi|303258306|ref|ZP_07344312.1| replicative DNA helicase [Burkholderiales bacterium 1_1_47] gi|331000188|ref|ZP_08323877.1| replicative DNA helicase [Parasutterella excrementihominis YIT 11859] gi|302858925|gb|EFL82010.1| replicative DNA helicase [Burkholderiales bacterium 1_1_47] gi|329572611|gb|EGG54250.1| replicative DNA helicase [Parasutterella excrementihominis YIT 11859] Length = 454 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 6/159 (3%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + L E ALL L+ +P L + N + ++ +FS Sbjct: 1 MSAPIIDSLPLPPHSPEAEHALLGALLANPESFHLIEPPLEPSDFYNYANRLIYQAIFSL 60 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + K + L E G + L+ R T Y + + Sbjct: 61 ASQGKPADVLTVSDLLREIGNEKETGGLEYLNR------LTESYASAANLSEYARIVKDK 114 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 R L + ++E ++ + + S ++ Sbjct: 115 ALKRNLISKLAQLEAEVNSDRGASSEDLLDRVQSEFLKM 153 >gi|91200197|emb|CAJ73241.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] gi|91200350|emb|CAJ73396.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] gi|91201279|emb|CAJ74339.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] gi|91201371|emb|CAJ74431.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] gi|91202009|emb|CAJ75069.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] gi|91202191|emb|CAJ75251.1| hypothetical zinc finger containing protein [Candidatus Kuenenia stuttgartiensis] Length = 100 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 5/90 (5%) Query: 3 YPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 + ++ L IPI LI + + +G + CP E S N + Sbjct: 5 FSPQLLRSLRNDIPIDRLIADVLSIPHK---YSEGYFRFLCPLCSEFN-SAT-NPNTNLA 59 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 CF C + + + SF ++V L Sbjct: 60 RCFRCKKNFNTIDIVMVDSNSSFPDAVYLL 89 >gi|331090538|ref|ZP_08339391.1| ATP-dependent protease La [Lachnospiraceae bacterium 2_1_46FAA] gi|330405881|gb|EGG85409.1| ATP-dependent protease La [Lachnospiraceae bacterium 2_1_46FAA] Length = 773 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 97/286 (33%), Gaps = 42/286 (14%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 R A +K + E + +L ++ E + D + I + + Sbjct: 26 FDVSREKSLEAVQKAMAEEQ-QIFLLTQKCIETENVTQDDLYEMGVVASVKQIVKMPKKI 84 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 LR R +L +L Q + + + K Sbjct: 85 LRVLVEGEQRAKLNELVQTEPYLEAEITVLEEYPFVEEEP--------------VKQEAM 130 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + L + P + +E +++A I EL++L + F E+ + Sbjct: 131 IRTLQELFLQYAVKTPKLTKETVEQIAGID----ELKRLVDEI----SANVPFRYEDTQK 182 Query: 540 RLCERG----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L E + L+++L+ +++ + + ++++ + + +++ LL + Sbjct: 183 LLEETDALKRYFLLVEKLENEIQVSKIK--------EELQEKVKARVDKHQKEYLLREEL 234 Query: 596 EEIEKQIAQVTAKGEAEKTAILISIL-------HEVHIQIHQIESQ 634 I++++ + +A++ A + L ++ +I + + Sbjct: 235 RVIQEELGDDSTISDADEFAKAVKELDAPEEVKEKLRKEIRRFRNT 280 >gi|218128831|ref|ZP_03457635.1| hypothetical protein BACEGG_00403 [Bacteroides eggerthii DSM 20697] gi|217989059|gb|EEC55375.1| hypothetical protein BACEGG_00403 [Bacteroides eggerthii DSM 20697] Length = 287 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + Y +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLVDFLAGFGYEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGKGGDIITLAKEI 71 >gi|329769508|ref|ZP_08260918.1| replicative DNA helicase [Gemella sanguinis M325] gi|328838723|gb|EGF88321.1| replicative DNA helicase [Gemella sanguinis M325] Length = 453 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 10/158 (6%) Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L E +LL L+ P L E + + + + + +++ + + I Sbjct: 6 DSVILAEQSLLGALMQEPEKLVEVKAAVDVEDFYDEKNKDIYNAILRLDEAEIIPDTTTI 65 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + G K +D + L+ T + L KR + R+ Sbjct: 66 FEEINNSG---AFKSMDASLYIVELYDITPST------RNIMHYANLVKR-YSIYREIRS 115 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + +G A+ ++ ++ +V + + ++ + Sbjct: 116 ALLSSTEEMNQGNADIDSLTATLFDQVERAMERAKTSQ 153 >gi|17227397|ref|NP_478448.1| hypothetical protein all8023 [Nostoc sp. PCC 7120] gi|17134796|dbj|BAB77353.1| all8023 [Nostoc sp. PCC 7120] Length = 1010 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 104/352 (29%), Gaps = 23/352 (6%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 L + I D + A L L + D+ I Sbjct: 56 DWINLKEALATIREIQDESNRAHALIALADKLPPDLLSEALTSAREIQDEYLCADALIAL 115 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 K + L ++ + + ++ + I+D+ R Sbjct: 116 ARKLPPDLLSEALATAREIQDEYFRTSTLIELAEKLPSVLSEALAAAREIQDEYFRASTL 175 Query: 426 QAIRDRL-QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 A+ ++L L + Y++ +A + L+ +L + + LR Sbjct: 176 IALAEKLPSVLSEALAAAREIQDEYFRADALRELAQKLPPDLLSEALAAVREIQPEYLRA 235 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE- 543 AL+ + P++L E + +I + L L + L E+ E Sbjct: 236 DALIALVEKLPSVLSEALAAIREI--QDEYLHA--DALRELVQKLPPDLLGEVLAAATEI 291 Query: 544 -------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK- 595 EL ++L + L +A E R + LA LLS Sbjct: 292 RGGYPHTNPLRELAEKLPPDLLSEALAAAR-EIQDESNRAHALRELAEKLPPDLLSEALT 350 Query: 596 --EEIEKQ------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 EI+ + + + K + + ++ E+ + ++ + + E Sbjct: 351 ATREIQSEYHRASTLRALAQKLPPDLLSEALAAAREIQDESNRASTLRELAE 402 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 25/238 (10%), Positives = 74/238 (31%), Gaps = 23/238 (9%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 +L I+D+ R + + ++L + + + + Sbjct: 374 PDLLSEALAAAREIQDESNRASTLRELAEKLPSVLPEALAAVRKIRHKSNRAYGLIALAE 433 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQYQELADIRYDNNELQKLW 519 ++ +L + R A+ L L P +L E +++I+ +N L Sbjct: 434 KLPSVLPEALAAATEIEPEYHR-ASTLRELAEKLPPDLLSEALTAISEIQPKSNRADALI 492 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + E++ L ++++ + A A E D+ Sbjct: 493 AL------------AEKLPPDLLSEALAA-IREIQDESNRAHALIALAEKLPPDLLSEAL 539 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 A+ + + + +++ + + ++ E+ + +++ + A+ Sbjct: 540 AAIREIQDESNRAHALIALAQKLP-------PDLLSEALAATREIQSKSNRVHALIAL 590 Score = 41.4 bits (95), Expect = 0.42, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 76/233 (32%), Gaps = 20/233 (8%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 I+D+ R + + ++L ++E R + + + Sbjct: 600 EALAAATEIQDESNRASTLRELAEKL---PPDLLSEALAAIREIQPKSNRVHALIALAQK 656 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + S L + + + E + L+E ++L + L + + Sbjct: 657 LPSVLPEALAAIREIHHEY-------HRDNALRELAEKLPP-NLLSEALAVIREI---HY 705 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + ++L E L + + + A E + +ALA + Sbjct: 706 ESNRTNALIALAKKLPS-VLPEALAAVRKIRDKSNRIYALRELA-DKLPSVLPEALATAR 763 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + K++A+ + + ++ + E+H + ++ ++ A+ E Sbjct: 764 EIHD-ESYRADALKELAEKLP---PDLLSEALTAIREIHDESYRADALIALAE 812 >gi|319644097|ref|ZP_07998646.1| hypothetical protein HMPREF9011_04249 [Bacteroides sp. 3_1_40A] gi|317384339|gb|EFV65308.1| hypothetical protein HMPREF9011_04249 [Bacteroides sp. 3_1_40A] Length = 295 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 20/222 (9%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + + YW P +E+TPSF ND +Y F Sbjct: 2 TIAEAKQ-VRIVDFLA---QLGHHAQHIKSEQYWYFSPLRNERTPSFKVNDRINEWYDFG 57 Query: 67 CHVKGDHLSF---LSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 GD + + S E+ ++RL G LP ++ ++ + Sbjct: 58 EATGGDLVELTKNICRTDSVS--EALAYIERLVN--GASLPRTRMPTAPPRPVEAEMKDV 113 Query: 121 ------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + L +A R++ + G + + Sbjct: 114 IVIPLRHHALFSYLQSRLIDADIGRMYCKEVHYELRGRHYFALAFGNISGGYEVRNAYYK 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216 +++ + L + + ++ F + L + G Sbjct: 174 GCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215 >gi|301311609|ref|ZP_07217536.1| DNA primase [Bacteroides sp. 20_3] gi|300830695|gb|EFK61338.1| DNA primase [Bacteroides sp. 20_3] Length = 287 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + Y +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLVDFLAGFGYEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGKGGDIITLAKEI 71 >gi|169823787|ref|YP_001691398.1| replicative DNA helicase [Finegoldia magna ATCC 29328] gi|302379848|ref|ZP_07268331.1| replicative DNA helicase [Finegoldia magna ACS-171-V-Col3] gi|303235375|ref|ZP_07321992.1| replicative DNA helicase [Finegoldia magna BVS033A4] gi|167830592|dbj|BAG07508.1| replicative DNA helicase [Finegoldia magna ATCC 29328] gi|302312326|gb|EFK94324.1| replicative DNA helicase [Finegoldia magna ACS-171-V-Col3] gi|302493496|gb|EFL53285.1| replicative DNA helicase [Finegoldia magna BVS033A4] Length = 445 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 16/160 (10%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +++ +I + + + + + + + + Q+++ + E+K + +L Sbjct: 14 AERSIIGAMIIDERAVDDAAEIVEPVDFYSTKYQEIYKAILQVIDEKKPVDYITLEDQLK 73 Query: 543 ERGFGELLKQLDRQVRDAGL-----------WSATTEANIVDVRQGYQQALALYKRFRLL 591 E++ +D + + ++A I ++ + Q + + + Sbjct: 74 SNNMYEIIGGIDELISISEAVGSAVNVKYYSEIVKSKAIIRNLMRVSQDVIDMSIANNSV 133 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 E E I +++ + + +L +I ++ Sbjct: 134 GEVLEYAESNIFKISQNRNHQDLVKIQEMLEPTLARIGEM 173 >gi|282855816|ref|ZP_06265118.1| replicative DNA helicase [Pyramidobacter piscolens W5455] gi|282586330|gb|EFB91596.1| replicative DNA helicase [Pyramidobacter piscolens W5455] Length = 448 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 52/161 (32%), Gaps = 14/161 (8%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L E A+L + L + + L+ + + + +++ + + Sbjct: 8 RLPPSNLDAERAVLGACLLDREALVDVTEFLSPDDFYDLNYRDVFNVIMDMVKSSRPVDM 67 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF------ 588 + L RG LL++L Q A + + A + A+++R Sbjct: 68 LTLSAELQNRG---LLEKLGGQAFLAAVIDSVPTAANAAYHARIVRDKAIHRRLISAGNA 124 Query: 589 -----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 S+ E+ + + + ++ L +V Sbjct: 125 IVRMGYDESKDLSELLEDAERFVFEVSRQRNEANFKSLRDV 165 >gi|167627913|ref|YP_001678413.1| replicative DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597914|gb|ABZ87912.1| replicative DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 464 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L ++ + ++ L + + + ++ + F + + L Sbjct: 18 AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 77 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 G L ++ + T V + Y + + R L +I ++I Sbjct: 78 TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 131 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +K E S + +V + + + E++ Sbjct: 132 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 167 >gi|212691123|ref|ZP_03299251.1| hypothetical protein BACDOR_00613 [Bacteroides dorei DSM 17855] gi|212666355|gb|EEB26927.1| hypothetical protein BACDOR_00613 [Bacteroides dorei DSM 17855] Length = 321 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 58/201 (28%), Gaps = 18/201 (8%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I+D I I++ + Y R+ W P +E SF N + +Y + Sbjct: 3 IEDAK-KISIADYLHSLGYSPVKRQGNGL-----WYKSPLREEHEASFKVNTDRNLWYDY 56 Query: 66 SCHVKGDHLSFLSAL---LGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIRLI 121 G+ ++ L ++ + R+A V + E L + Sbjct: 57 GAGKGGNIITLAKELYCSDHVPYL--LDRIAEQTPHVRPVSFSFPQRRTEPSFQHL-EIH 113 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 ++A L + + ++ L +R Y ++ + + Sbjct: 114 DLAH---PALLHYLQGRGINIELAKRECKELHFTHNGKPYFAIGFPNMAGGYEVRNSFFK 170 Query: 182 KIIEAGLLIDGDNSATSYDRF 202 I + ++ Sbjct: 171 GCIAPKDITHIRQQGEPREKC 191 >gi|254876999|ref|ZP_05249709.1| replicative DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843020|gb|EET21434.1| replicative DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 464 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L ++ + ++ L + + + ++ + F + + L Sbjct: 18 AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 77 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 G L ++ + T V + Y + + R L +I ++I Sbjct: 78 TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 131 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +K E S + +V + + + E++ Sbjct: 132 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 167 >gi|125973671|ref|YP_001037581.1| zinc finger, CHC2-type [Clostridium thermocellum ATCC 27405] gi|125713896|gb|ABN52388.1| zinc finger, CHC2-type [Clostridium thermocellum ATCC 27405] Length = 687 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 16 PISNLIGQYV---DWD----RRKTNAVKGDYWACCPFHDE-KTP-SFHCNDSKGFYYCFS 66 I LI Q + + KG + CPFH P S ND+K ++C + Sbjct: 27 DIEPLIQQSLTAAKLKDFYGLKGK-YSKGRFV--CPFHHGADNPTSLSMNDNKRCFHCNA 83 Query: 67 CHVKGDHLSFLSALLGCS 84 C G +L F+ + S Sbjct: 84 CGKSGTYLEFIMYMQNIS 101 >gi|323697618|ref|ZP_08109530.1| DnaB domain protein helicase domain protein [Desulfovibrio sp. ND132] gi|323457550|gb|EGB13415.1| DnaB domain protein helicase domain protein [Desulfovibrio desulfuricans ND132] Length = 453 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 SL GK+ L E A+L ++ + AI E L + + + +++ + + + Sbjct: 6 ESLAHGKIPPFDLLAEHAVLEGVLRNNAIFHEIIDLLNRQSFYHPDHGAIFAAMTTCYDN 65 Query: 529 QKYFLPEEIHQRLCERG----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + E L + A V + + + L Sbjct: 66 NEPIDANTVQTAVEAENRNICLREYLHTCTPEGGSLSPRDIVKYAEQVRDKATLRSLIQL 125 Query: 585 YKR-----------FRLLSRQKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIE 632 + L+ ++E+ ++ + T + + +++S+L ++ + Q Sbjct: 126 GNKIATMAYNSQAPLVTLNEAEKEL-FELKRKTKTFDKPAASEVIMSVLDTINSKFKQGN 184 Query: 633 SQEAMIEGF 641 + + GF Sbjct: 185 AGPGLKTGF 193 >gi|241668465|ref|ZP_04756043.1| replicative DNA helicase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 465 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L ++ + ++ L + + + ++ + F + + L Sbjct: 19 AEKAILGNILLNNDNIELVEDFLLIDDFFDKRHKIIYKQITVLNQSNTPFDVLILSEYLA 78 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 G L ++ + T V + Y + + R L +I ++I Sbjct: 79 TEGL------LSEAGGESYIIDLATNTPAVSNIKTYANIVKDKAKLRSLQASVNDIVQKI 132 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAM 637 +K E S + +V + + + E++ Sbjct: 133 YSSDSKNPDEVIDYAESRILDVAKERETLVKGPESI 168 >gi|258655460|ref|YP_003204616.1| replicative DNA helicase [Nakamurella multipartita DSM 44233] gi|258558685|gb|ACV81627.1| replicative DNA helicase [Nakamurella multipartita DSM 44233] Length = 832 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 19/180 (10%), Positives = 50/180 (27%), Gaps = 19/180 (10%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + + + E ++L ++ + + + L + Sbjct: 6 QRWSEGPVRTPPPPGFDRQPPQDQAAEQSVLGGMLMSKDAVADVLEALTSADFYRPAHAL 65 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 ++ + + + + L + G L ++ V L + A Sbjct: 66 IFDAILDLYSRGEPADTVTVAAELDKSGS---LGRIGGAVYLHTLMATVPTAA---NAAF 119 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQV---------TAKGEAEKTAILISILHEVHIQI 628 Y Q +A + + R+ E +I Q+ E + L++V + Sbjct: 120 YAQIVA----EKAILRRLVEAGTRIVQLGYGGNDGEMGGGEVDEIVDRAQAELYDVTERR 175 >gi|310826868|ref|YP_003959225.1| DNA primase [Eubacterium limosum KIST612] gi|308738602|gb|ADO36262.1| DNA primase [Eubacterium limosum KIST612] Length = 187 Score = 53.0 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF-YY 63 ++ + + + ++G Y + + CP HD K +F D F + Sbjct: 4 KEKADLIKATLTMREILGMY------GLGSNARHHRIPCPIHDGKDRNFSFTD---FGFR 54 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV--PLPV-VDPKIEKKEKIQTDLIRL 120 CF C +G + F+ G SF +++ + + P + + + + R Sbjct: 55 CFVCGAEGGLVHFVELYRGLSFEAALEEINGRFRLWEDYPELESVESSRNQHKKDSAFRS 114 Query: 121 IEVATDFFHH 130 H Sbjct: 115 RRAIAKLRHE 124 >gi|319941484|ref|ZP_08015812.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B] gi|319805104|gb|EFW01934.1| replicative DNA helicase [Sutterella wadsworthensis 3_1_45B] Length = 465 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 65/199 (32%), Gaps = 15/199 (7%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 ++ + + + L E A+L L+ + L + + + + ++ + Sbjct: 2 AEENIDEAAQAVRRPPSSVLSEQAILAGLMIDNSALDSVVDIIRPEDFYRRDHRIIFEEI 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFG----------ELLKQLDRQVRDAGLWSATTEANIV 572 E + + L +G EL+ + +++ Sbjct: 62 VQLLQEGHPADYLTVFESLKSKGIENDAGGLPYLTELVGSSPSAANIRRYAEIVHDKSVL 121 Query: 573 DVRQGYQQAL---ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQ 627 + AL R +E EK++ + + + L++++ +V + Sbjct: 122 RQLITVGDRIVTNALAPEGRETREILDEAEKEVLAINERNARTQRGFQPLVTLVRDVSAR 181 Query: 628 IHQIESQEAMIEGFGKMSG 646 + ++ + ++ E G SG Sbjct: 182 VIELYNTKSTSEVTGVSSG 200 >gi|296167062|ref|ZP_06849474.1| replicative DNA helicase DnaB [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897619|gb|EFG77213.1| replicative DNA helicase DnaB [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 458 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 53/173 (30%), Gaps = 15/173 (8%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E A+L ++ + + + L + Q ++ Sbjct: 8 APGMDSPAPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + L RG +L+++ L S A GY Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRG---MLRRIGGAPYLHTLISTVPTA----ANAGYYA 120 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + + L R+ E ++ Q AE + ++EV + Sbjct: 121 TIVA---EKALLRRLVEAGTRVVQYGYAGAEGADVAEIVDRAQAEIYEVADRR 170 >gi|284049288|ref|YP_003399627.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731] gi|283953509|gb|ADB48312.1| ATP-dependent chaperone ClpB [Acidaminococcus fermentans DSM 20731] Length = 847 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/202 (11%), Positives = 73/202 (36%), Gaps = 2/202 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + S R ++ + +++ + ++ ++++AL+ Sbjct: 311 YRKYIEKDSALERRFQPVLVKEPSVEDTISILRGLKERYEVHHGVRIKDSALVAAATLSN 370 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554 + +++ I + +L + S E + ++ E+ E Sbjct: 371 RYINDRFLPDKAIDLVDEAAARLRVEIDSMPTELDESRRRMLQLQIEEQALSKEEDDASK 430 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ A ++ + ++ + R + + + ++K++ + + + Sbjct: 431 ARLEKIKEELAKLKSENDKLMDQWKAEKGGIAKIRQVKKDMDNVKKEMEEAERSYDLNRL 490 Query: 615 AIL-ISILHEVHIQIHQIESQE 635 A L L E+ Q+ +E +E Sbjct: 491 AELKYGKLPELQKQLAALEKEE 512 >gi|255103008|ref|ZP_05331985.1| putative deoxyribonuclease [Clostridium difficile QCD-63q42] Length = 249 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 66/251 (26%), Gaps = 17/251 (6%) Query: 1 MNYP-RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M + I + I L + + CP H K +F + +K Sbjct: 1 MKIDIKQLIDIIKN-ANIDEL-----YLRDIGVDTTQKRNV-PCPIHGGKDKNFQFDLNK 53 Query: 60 GFYYCFS--CHVKGDHLSFLSALLGCSFI-ESVQRLAAIAGVPLPVVDPKIEKKEKIQ-- 114 Y C+S C V D + E++ LA + LP+ K K+ Sbjct: 54 RIYTCYSHNCVVGADIIELCRTYERFERPIEAILFLANKYNISLPINKSKTNIKKTNNTI 113 Query: 115 TDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 ++ + F + A E + + S+ E Sbjct: 114 KNIYIKKKDINSFIEEKKQEAFKNNDIELAFEFECMTDKDKRKYYLDNNIKIKSMLEKQN 173 Query: 175 QKGFSEEKIIEAGLLI----DGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGES 230 + + II I G + + ++ + G+ + Sbjct: 174 YSSYKADSIINIDKYISENLKGIRESIKHATEGKNVLMVAPTGSGKTYSIINTLKELDIK 233 Query: 231 VKYLNSPETIL 241 ++ + Sbjct: 234 ALFIFPNSANV 244 >gi|329896994|ref|ZP_08271787.1| Replicative DNA helicase [gamma proteobacterium IMCC3088] gi|328921502|gb|EGG28887.1| Replicative DNA helicase [gamma proteobacterium IMCC3088] Length = 474 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 53/164 (32%), Gaps = 10/164 (6%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L + K++ E ++L L+ + + + ++ + ++ + Sbjct: 23 PDRELSRIKMAPHSIEAERSVLGGLLIANDAWDSVAEAVTAADFYRHDHRLIFRQIAKLA 82 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E + RL G +LD A + + + Y + + Sbjct: 83 NESDPIDVITLSDRLAAAG------ELDSVGGLAYITELAADTPSASNIRAYAKVV---- 132 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R R L R+ E + IA+ E + LI +QI + Sbjct: 133 RERSLLRRLIETAQDIAEAGFNPEGRSSEELIDEAEHKIMQISE 176 >gi|327314484|ref|YP_004329921.1| hypothetical protein HMPREF9137_2272 [Prevotella denticola F0289] gi|326944562|gb|AEA20447.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 316 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 + + + I + + + RR Y P +E PSF + K + Sbjct: 3 EEDLSLIK-RYSIMEYLERKGIRLVRR--TPAYAMYR--SPLREETRPSFKVDTEKNLWI 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L C+ E++ RL A Sbjct: 58 DYAEGRGGSIIDLYMRLEDCTLSEAICRLGQNA 90 >gi|328883735|emb|CCA56974.1| Replicative DNA helicase [Streptomyces venezuelae ATCC 10712] Length = 494 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 22/188 (11%), Positives = 63/188 (33%), Gaps = 26/188 (13%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + + + + +++ + + + + P Sbjct: 57 RVPPQDLDAEQSVLGGMLLSKDAIADVVEIIKGHDFYKPAHETVYAAILDLYAKGEPADP 116 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +RG ++ R + L + Y + + R + R+ Sbjct: 117 ITVGAELTKRG------EITRVGGASYLHTLVQSVPTAANASYYAEIVH----ERAVLRR 166 Query: 595 KEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIESQEAMI 638 E +I Q+ + E + ++ V Q ++ EA+ Sbjct: 167 LVEAGTKITQMGYAADGDVDEIVNSAQAEIYAVTEQRTTEDYLPLGDIMEGALDEIEAIG 226 Query: 639 EGFGKMSG 646 G+M+G Sbjct: 227 SRSGEMTG 234 >gi|257067517|ref|YP_003153772.1| primary replicative DNA helicase [Brachybacterium faecium DSM 4810] gi|256558335|gb|ACU84182.1| primary replicative DNA helicase [Brachybacterium faecium DSM 4810] Length = 480 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 19/182 (10%), Positives = 51/182 (28%), Gaps = 12/182 (6%) Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS--LREAALLLTLINHPAILQEQ 501 R + S ++ +G P E +L ++ + + Sbjct: 6 RRPDREHSRRRSSYTGPVTSTEAFEAGPDRGLERTPPQDLAAERGVLGGMMLSKDAIADV 65 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + + ++ + + + + L +RG L ++ A Sbjct: 66 VETVRGHDFYRPAHEMIYEAIIDLYGRGEPADLVTVSDELSKRG---ELARVGGGAYLAD 122 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 L A Y + + + R+ E +I Q+ + + +I+ Sbjct: 123 LIDMVPTAA---NAGYYAEIVVERAQL----RRLVEAGTRIVQLGYAADGGEVDEVINEA 175 Query: 622 HE 623 Sbjct: 176 QA 177 >gi|253744718|gb|EET00875.1| Protein 21.1 [Giardia intestinalis ATCC 50581] Length = 681 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%) Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 +N R + K + L +++ + +L+E L + IL+E + L+D+ Sbjct: 248 RNLRKQYNKVVRENLEMRNVMDELSTTLENLKENN--AQLTSDRDILKETNKHLSDMD-- 303 Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564 ++L + + E E+ + E + LD+ + ++ + S Sbjct: 304 ----RRLKQ-VINHTGEGDVVDCVNELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615 + D + L ++ R+ E+E ++ + E E Sbjct: 359 SEASDLKKDRARLLSDVKDLRQKLYDKERELRELEIKLETSNREAEQLVYERQEVEETLT 418 Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640 L + L + I+ A IEG Sbjct: 419 RLTNELQSAKTLLQTIKQGAASIEG 443 >gi|220908358|ref|YP_002483669.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425] gi|219864969|gb|ACL45308.1| ATP-dependent chaperone ClpB [Cyanothece sp. PCC 7425] Length = 872 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + ++ + + AL+ Sbjct: 321 YRKYIEKDAALERRFQQVYIDQPSVEDTISILRGLKERYEVHHGVKISDNALVAAASLSS 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + + + Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLEKE-SSAAS 439 Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + R L + + +Q + + + + + E++ QI Q + K Sbjct: 440 RERLERLEKELADLKQEQTSLNAQWQGEKQIIDQLQAIKEEIEQLNVQIQQAERDFDYNK 499 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L ++ ++ + E+Q A Sbjct: 500 AAKLKFGQLTDLQRRLEETETQLA 523 >gi|39938873|ref|NP_950639.1| hypothetical protein PAM_387 [Onion yellows phytoplasma OY-M] gi|39721982|dbj|BAD04472.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 292 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 48/256 (18%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91 CP H K P+ S +C+ C D + + SF E++QR Sbjct: 37 PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96 Query: 92 ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129 L + P ++ + L + L D++H Sbjct: 97 FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156 Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181 + L R+ Y +R + I+ FKLGYAP S SL + +++ Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216 Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233 K++E G I +D F +I P+ + + F + + Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276 Query: 234 LNSPETILFHKGKNLY 249 N +T H + Sbjct: 277 TNFSQTPTLHFSYRFF 292 >gi|78185726|ref|YP_378160.1| ATPase [Synechococcus sp. CC9902] gi|78170020|gb|ABB27117.1| ATPase [Synechococcus sp. CC9902] Length = 941 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + +L + S K + EE L L + + L Sbjct: 466 AIDLIDEAAAQLKMEVTS-----KPQVVEEAEADLRRVELAVLAAEQAPEAERIQLQRNR 520 Query: 567 TE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623 + A + D+R+ +Q+ L RQ EE+ IA+ G+ E+ A L LH Sbjct: 521 LDGAARLDDLRRRWQEERNQLDELGQLLRQDEELRHAIAEAERDGDLEEAARLQYDQLHT 580 Query: 624 VHIQIHQI 631 + + ++ Sbjct: 581 LQQRREEL 588 >gi|268611940|ref|ZP_06145667.1| hypothetical protein RflaF_20836 [Ruminococcus flavefaciens FD-1] Length = 3221 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 23/100 (23%) Query: 1 MNYPRDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN 56 M + NL + D + V D HD S H N Sbjct: 1 MRIT----DEQKERAAFVNLPQFLMAHGFDLKKVGREYVWKD-------HD----SLHIN 45 Query: 57 D----SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 D +G ++ FS GD++ FL +G SF+++V+ L Sbjct: 46 DNGPGERGAWFRFSEDKGGDNIGFLREYMGMSFVDAVEAL 85 >gi|17978023|emb|CAC85955.1| nonmuscle heavy chain myosin II-A [Mus musculus] Length = 1960 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ + E E ++ ELE + +++++ Sbjct: 870 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 930 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E L + + L KL + +D E ++ Sbjct: 990 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + + ++ ++ ++++ Sbjct: 1101 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1147 Score = 37.6 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 23/227 (10%), Positives = 69/227 (30%), Gaps = 15/227 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + ++ + + +R+ +L + K +D + ++ K Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +K + + L + + LA + + +L+ + + + E Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + EL ++ L + ++ L++ + Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIALLEEELEEEQGNTELINDRL 1752 Query: 596 EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633 ++ QI Q+ E++ L E+ ++ ++ES Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799 >gi|333025751|ref|ZP_08453815.1| putative replicative DNA helicase [Streptomyces sp. Tu6071] gi|332745603|gb|EGJ76044.1| putative replicative DNA helicase [Streptomyces sp. Tu6071] Length = 508 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E ++L ++ + + + L + + ++ + + + Sbjct: 66 PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 125 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + P + L RG ++ + L + + Y + + R Sbjct: 126 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 175 Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633 + R+ E +I Q+ + E + + +V Q ++ Sbjct: 176 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 235 Query: 634 QEAMIEGFGKMSG 646 EA+ G+M+G Sbjct: 236 IEAIGSRSGEMTG 248 >gi|253571048|ref|ZP_04848456.1| DNA primase [Bacteroides sp. 1_1_6] gi|251839997|gb|EES68080.1| DNA primase [Bacteroides sp. 1_1_6] gi|313157107|gb|EFR56537.1| mobilizable transposon, excision family protein [Alistipes sp. HGB5] Length = 295 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 67/222 (30%), Gaps = 20/222 (9%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I + + I + + + YW P +E+TPSF ND +Y F Sbjct: 2 TIAEAKQ-VRIVDFLA---QLGHHAQHIKSEQYWYFSPLRNERTPSFKVNDRINEWYDFG 57 Query: 67 CHVKGDHL---SFLSALLGCSFIES---VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 GD + ++ S E+ ++RL G LP ++ ++ + Sbjct: 58 EATGGDLVELAKYICRTDCVS--EALAYIERLVN--GASLPRTRMPTAPPRPVEAEMKDV 113 Query: 121 ------IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLR 174 + L +A R++ + G + + Sbjct: 114 IVIPLRHHALFSYLQSRLIDADIGRMYCKEVHYELRGRHYFALAFGNTSGGYEVRNAYYK 173 Query: 175 QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ 216 +++ + L + + ++ F + L + G Sbjct: 174 GCLNNKDISLIRHLTEETQENVCVFEGFMDFLSYMTLKLAGD 215 >gi|319957754|ref|YP_004169017.1| primary replicative DNA helicase [Nitratifractor salsuginis DSM 16511] gi|319420158|gb|ADV47268.1| primary replicative DNA helicase [Nitratifractor salsuginis DSM 16511] Length = 478 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 22/161 (13%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L +I P I +E L + Q L+ + + +K E + + L Sbjct: 10 ERAVLSAIIFDPEIFEEIAARLKPEDFYLPFHQHLFRAMEQLSLAEKPIDEEFLRKELER 69 Query: 544 RGF------------------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 G ++++ L + TE + V + + + Sbjct: 70 VGKFDEAEMVEVLSANPITDTKAYVEEIKALATKRSLVTLATEIKKLTVEENLEATEVMD 129 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + + ++ EI ++ + E T ++ + + Sbjct: 130 R----VEQKLYEITQESVSEDFRPSDEITLSMMQEIERLKA 166 >gi|168004061|ref|XP_001754730.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693834|gb|EDQ80184.1| predicted protein [Physcomitrella patens subsp. patens] Length = 806 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/268 (10%), Positives = 89/268 (33%), Gaps = 23/268 (8%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + + + ++D K R + + RL++ ++K + Sbjct: 390 YHVRGELDDERERVKAKAEAVAKMARALEDTKSRAAEAHDLEKRLEEEYKKSEGKTEDQR 449 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-------ILQE 500 R ++ R + + L + + K+S++ + L + + + + Sbjct: 450 RLREELESVRSRANEADSLSERLEREIKISEERQETVQKITRELEDARSKASDAHSLSKR 509 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE---------LLK 551 +E+ + ++L L + + + L + L++ Sbjct: 510 LEEEIKKSEGKTEDQRRLRKELEDARRKADEADS--LSKALEDEQNKNEAIRDSERKLIE 567 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEEIEKQIAQVTAK 608 L++ A + + R+ ++ L K R L+++ + + K+ + + Sbjct: 568 DLEKMKDKARDADNLSRKLSEEERKVSEKDSNLTKQSERLSELNKKLKNLRKERDEARKE 627 Query: 609 GEA--EKTAILISILHEVHIQIHQIESQ 634 ++ S + E+ +I ++E + Sbjct: 628 ARKQNDRAESNESRIKELESRIKELEEE 655 >gi|114326446|ref|NP_071855.2| myosin-9 isoform 1 [Mus musculus] gi|205371802|sp|Q8VDD5|MYH9_MOUSE RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain, type A; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain A; Short=NMMHC-A; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|74180962|dbj|BAE27761.1| unnamed protein product [Mus musculus] gi|74180967|dbj|BAE27763.1| unnamed protein product [Mus musculus] gi|74180971|dbj|BAE27765.1| unnamed protein product [Mus musculus] gi|74180973|dbj|BAE27766.1| unnamed protein product [Mus musculus] gi|74180975|dbj|BAE27767.1| unnamed protein product [Mus musculus] gi|74180985|dbj|BAE27772.1| unnamed protein product [Mus musculus] gi|74180987|dbj|BAE27773.1| unnamed protein product [Mus musculus] gi|74180995|dbj|BAE27776.1| unnamed protein product [Mus musculus] gi|74180997|dbj|BAE27777.1| unnamed protein product [Mus musculus] gi|74180999|dbj|BAE27778.1| unnamed protein product [Mus musculus] gi|74181014|dbj|BAE27783.1| unnamed protein product [Mus musculus] gi|74181018|dbj|BAE27785.1| unnamed protein product [Mus musculus] gi|74181123|dbj|BAE27829.1| unnamed protein product [Mus musculus] gi|74184545|dbj|BAE27894.1| unnamed protein product [Mus musculus] gi|74184580|dbj|BAE27906.1| unnamed protein product [Mus musculus] gi|123233477|emb|CAM23428.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus] gi|148697703|gb|EDL29650.1| myosin, heavy polypeptide 9, non-muscle [Mus musculus] Length = 1960 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ + E E ++ ELE + +++++ Sbjct: 870 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 930 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E L + + L KL + +D E ++ Sbjct: 990 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + + ++ ++ ++++ Sbjct: 1101 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 1147 Score = 37.9 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + ++ + + +R+ +L + K +D + ++ K Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSMAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +K + + L + + LA + + +L+ + + + E Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + EL ++ L + Q ++ L++ + Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752 Query: 596 EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633 ++ QI Q+ E++ L E+ ++ ++ES Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799 >gi|326427620|gb|EGD73190.1| WD repeat-containing protein 65 [Salpingoeca sp. ATCC 50818] Length = 1196 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/290 (10%), Positives = 103/290 (35%), Gaps = 19/290 (6%) Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 ED ++ ++ + + + ++ E + + + + K Sbjct: 688 FTQEKEDLKRQLQSVKAEKEKEENRHNEEIASLNDRQLQEIQELEHQHNQKLMTEYEKYQ 747 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + K Q+++ Y + + +R+ ++ + + + Y + + Q Sbjct: 748 MLQKKSQEMQSDYEEQL-ERMASSKEQALKDLAEYWESKLREKTAMLEAANEAARDQQRE 806 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + + + +L +N+ L+E+ + +++ +N L K + L + E+++ Sbjct: 807 HEEIVRQIELDADKEILAMRLNYEKALKEEKEHGLEVKGENGILLKKFKALQREIEEEQH 866 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + +L + R+ + ++ ++ L K+ + L Sbjct: 867 KRADM------QAEQKKLHAHIKALEREIVSGKKEIDERDETIQDKERRIYDLKKKNQEL 920 Query: 592 SR-------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +E++KQI + + + + + E+ +++ + Sbjct: 921 EKFKFVLDYKIKELKKQI-----EPKDQDIRAMKQQISEMDVELERYHKT 965 >gi|189427032|ref|YP_001950131.1| DNA primase [Ralstonia phage RSL1] gi|189233344|dbj|BAG41701.1| DNA primase [Ralstonia phage RSL1] Length = 345 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 5/44 (11%) Query: 32 TNAVKGDYWACCPFHDEKTPS-F-HCNDSK---GFYYCFSCHVK 70 CPFH E TPS F D K G +YCF+C Sbjct: 26 KKETGHRMMILCPFHSENTPSAFVTVGDGKYSPGSFYCFACEKG 69 >gi|318059001|ref|ZP_07977724.1| replicative DNA helicase [Streptomyces sp. SA3_actG] gi|318075527|ref|ZP_07982859.1| replicative DNA helicase [Streptomyces sp. SA3_actF] Length = 514 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E ++L ++ + + + L + + ++ + + + Sbjct: 72 PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 131 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + P + L RG ++ + L + + Y + + R Sbjct: 132 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 181 Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633 + R+ E +I Q+ + E + + +V Q ++ Sbjct: 182 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 241 Query: 634 QEAMIEGFGKMSG 646 EA+ G+M+G Sbjct: 242 IEAIGSRSGEMTG 254 >gi|85373630|ref|YP_457692.1| hypothetical protein ELI_04015 [Erythrobacter litoralis HTCC2594] gi|84786713|gb|ABC62895.1| hypothetical protein ELI_04015 [Erythrobacter litoralis HTCC2594] Length = 302 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%) Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67 R ACCP HD++TPS + + ++CF C Sbjct: 24 RGGKWSGTKGMACCPAHDDRTPSLGVSLGRQAILFHCFAGC 64 >gi|227834259|ref|YP_002835966.1| Replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|262182992|ref|ZP_06042413.1| replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975] gi|227455275|gb|ACP34028.1| Replicative DNA helicase [Corynebacterium aurimucosum ATCC 700975] Length = 474 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 49/194 (25%), Gaps = 7/194 (3%) Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 + ++ + + E +L ++ P + E +EL + ++ Sbjct: 23 RRSYRQEEPKRYGEFRQPPADREAEQGVLGAMLLSPNTVMEVIEELEPEDFYYPAHTLIY 82 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIV 572 + + + RL E L L A Sbjct: 83 QAMIDLYAAGTDIDAVIVAARLDRYNNLERVGGAPYLHTLLATVPTAANARYYAEIVAEK 142 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 V + A + + EIE + + + A + I Sbjct: 143 AVLRKLVDAGTRVVQLGFQGSEDMEIESVLDRAQQEVFAVAQKKTTEDYRALSDLIDPTI 202 Query: 633 SQEAMIEGFGKMSG 646 + A ++ G SG Sbjct: 203 DELAALQQNGVESG 216 >gi|25029372|ref|NP_739426.1| replicative DNA helicase [Corynebacterium efficiens YS-314] gi|259508446|ref|ZP_05751346.1| replicative DNA helicase [Corynebacterium efficiens YS-314] gi|23494660|dbj|BAC19626.1| putative replicative DNA helicase [Corynebacterium efficiens YS-314] gi|259164000|gb|EEW48554.1| replicative DNA helicase [Corynebacterium efficiens YS-314] Length = 527 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 63/208 (30%), Gaps = 14/208 (6%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + G GR + R + G + + + E +L ++ P Sbjct: 53 NRGSRDGGAGRDGRSFNRGPGRGGRDRETGSREYRDFRSPPYDNDAEMGVLGAMLLSPNT 112 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC----------ERGFG 547 + + L + Q ++ + F + K P + RL Sbjct: 113 VIDILDVLTPDDFYRPAHQLIFQAIIDLFSDNKDIDPVIVSGRLDRTNDLERVGGGAYLH 172 Query: 548 ELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 L++ + +E ++ D Q + + ++++ Sbjct: 173 TLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDDGAEIDAVIDRAQQEVF 232 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI 631 V+ K + E A+L IL + ++ Q+ Sbjct: 233 AVSQKNQTEDYAVLADILGDTMEELEQL 260 >gi|332528193|ref|ZP_08404221.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2] gi|332112761|gb|EGJ12554.1| ATP-dependent chaperone ClpB [Rubrivivax benzoatilyticus JA2] Length = 864 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 75/204 (36%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KY+ + + R ++K + +++ K ++ + + A++ ++H Sbjct: 318 YRKYVEKDAALERRFQKVLVDEPSVEATVAILRGLQEKYEVHHGVEITDPAIVAAAELSH 377 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553 I + I + K+ + S I ++ + + Sbjct: 378 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPEAMDRLDRRMIQLKIEREAVKKEQDEAS 436 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 R++ + D+ + + A + + + + I+ QI ++ KG+ + Sbjct: 437 QRRLGLIEEELLKLQREYNDLEEIWTAEKAQAQGSAQVKEEIDRIKFQIEELKRKGDFNR 496 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ ++ + +++EA Sbjct: 497 VAELQYGKLPELEKRLKEAQAKEA 520 >gi|39938561|ref|NP_950327.1| hypothetical protein PAM_075 [Onion yellows phytoplasma OY-M] gi|39721670|dbj|BAD04160.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 292 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 47/256 (18%), Positives = 81/256 (31%), Gaps = 48/256 (18%) Query: 42 CCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQR--------- 91 CP H K P+ S +C+ C D + + SF E++QR Sbjct: 37 PCPIHQGKNPTCCHFTSNNKIHCWKCGKDYDLIDVYMVIRQIKSFSEAIQRIEGFMNSFE 96 Query: 92 ------------------LAAIAGVPLPVVDPKIEKKEKIQTDLIR----LIEVATDFFH 129 L + P ++ + L + L D++H Sbjct: 97 FKTLSQQEKETTKITINPLKQLYHSMKPKQPVDEQEINIKKKQLFQKISPLFNQIRDYYH 156 Query: 130 HSLKNARDKRLH----YYLDERGIDSHAIEMFKLGYAPDSRYSLRE----HLRQKGFSEE 181 + L R+ Y +R + I+ FKLGYAP S SL + +++ Sbjct: 157 YLLTTNRNNESQPGLTYLTKKRKLTLETIKEFKLGYAPLSDKSLSFRLVNYCKKQNIDTT 216 Query: 182 KIIEAGL---LIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL-----SKGESVKY 233 K++E G I +D F +I P+ + + F + + Sbjct: 217 KLVEYGFIKEKISQQGKKYFHDTFHGSIIIPVENGYNKTFHFYQNHFREVSYFQPKYQAL 276 Query: 234 LNSPETILFHKGKNLY 249 N +T H + Sbjct: 277 TNFSQTPTLHFSYRFF 292 >gi|328912210|gb|AEB63806.1| SPBc2 prophage-derived uncharacterized protein yorJ [Bacillus amyloliquefaciens LL3] Length = 378 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 41/341 (12%), Positives = 100/341 (29%), Gaps = 66/341 (19%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGD------YWACCPFHDEKTPSF- 53 M Y + + + + ++ + + + D Y C H+ + S+ Sbjct: 1 MKYDK---DRIKESLTLEDI---HKILKELGSENNQWDQQGNPIYRTVC--HNASSGSYK 52 Query: 54 --HCNDSKGFYYCFS-CHVKGDHLSFL-----SALLGCSFIESVQRLAAIAGVPLPVVDP 105 + +++K ++C++ C D + + SF ++++ +A +AG Sbjct: 53 LYYYHEAKQ-FHCYTECGDTFDVFELVIRAKRQKGINISFNQAIEYVARLAG----RTFG 107 Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 ++ DLI E F + I + Sbjct: 108 FGNRETFTNNDLIDDWEWMGKF----------------KKRKKIGIELPSFNETVLD--- 148 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + ++ + + + P R ++I R+L Sbjct: 149 -----VFMPYPHQMWLDEGISMQTLNDFEIGYYFRSYTEGITIPHRDLNNRLIGIRRRSL 203 Query: 226 SKGE-SVKYLNSP---ETILFHKG--KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 K E Y P E L++ NLY + +++ + + + S + + Sbjct: 204 IKEEVDAGYKYMPLKVENTLYNHQTMMNLYGLHKTKDSIERFKKALIFESEKSVLKCQDF 263 Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLC 320 Y + + ++ + +L L V Sbjct: 264 YGEAN--------FTCAVCSNNISNFHRDILLSLGVEEVFI 296 >gi|302520482|ref|ZP_07272824.1| replicative DNA helicase [Streptomyces sp. SPB78] gi|302429377|gb|EFL01193.1| replicative DNA helicase [Streptomyces sp. SPB78] Length = 496 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E ++L ++ + + + L + + ++ + + + Sbjct: 54 PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 113 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + P + L RG ++ + L + + Y + + R Sbjct: 114 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 163 Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633 + R+ E +I Q+ + E + + +V Q ++ Sbjct: 164 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 223 Query: 634 QEAMIEGFGKMSG 646 EA+ G+M+G Sbjct: 224 IEAIGSRSGEMTG 236 >gi|147668726|ref|YP_001213544.1| hypothetical protein DehaBAV1_0074 [Dehalococcoides sp. BAV1] gi|146269674|gb|ABQ16666.1| hypothetical protein DehaBAV1_0074 [Dehalococcoides sp. BAV1] Length = 867 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 19/72 (26%) Query: 1 MNYP--RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M + I D+L + + + ACCP H++K PS ++ Sbjct: 1 MTIATRKYTIDDILAKL--------------QGVKKNGSGFMACCPAHEDKNPSLSISEK 46 Query: 59 KG--FYYCF-SC 67 G CF C Sbjct: 47 DGKVLLKCFAGC 58 >gi|315607180|ref|ZP_07882184.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251234|gb|EFU31219.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 330 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 4/92 (4%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 + + + PI + + +V Y P E PSF + K + Sbjct: 3 EEDLSRIKQ-YPIVEYLESK-GIKPVRRTSVYALYR--SPLRAETHPSFKVDTEKNLWID 58 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 ++ G + L GC+ E++ L A Sbjct: 59 YAECRGGSIIDLCMRLEGCTLSEAIHHLGQNA 90 >gi|146296474|ref|YP_001180245.1| hypothetical protein Csac_1454 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410050|gb|ABP67054.1| hypothetical protein Csac_1454 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 372 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 93/306 (30%), Gaps = 24/306 (7%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 + N K ++C C + G+ L + L E+ + L I L + K Sbjct: 48 LYINVHKNTFFCHRCGIGGNALQLYAWLNNIDTKEAYKELVQI----LTKGTKRARKAVA 103 Query: 113 IQTDLIRLIEVATD----------FFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGY 161 T + T+ +H LK D++ +L RG+ I+ Sbjct: 104 EPTATYDVNATQTENLAPVEQRDLVYHEFLKLLDLDEKYREHLLSRGVTDTFIKFKGYRS 163 Query: 162 APDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFG 221 R+ + + + +EA ++ N P+ S G + Sbjct: 164 LNVKDERKRKEICKTLIEKGLTLEAVPGFFKHSNGEWDFVPYNGFCIPVVSLEGMIQGLQ 223 Query: 222 GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 R + S KY + A N++ + + FII Sbjct: 224 VRIVGDTNSGKYRWFSSGNISTGTS-------AKNFVHVVGTFNEEKYKRVFIIEGALKA 276 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCFDGDDPGLRAAYKAIDLVL 339 D+ S G V + + ++++ K L + + FD D + +A + + Sbjct: 277 DICSYLMDGELFVALPGVNSSHDEAVQIVKKLGLKNEVFIVFDNDIIEKKEVQEAYERLK 336 Query: 340 CHLIPG 345 Sbjct: 337 RKFKNE 342 >gi|323341117|ref|ZP_08081365.1| replicative DNA helicase DnaB [Lactobacillus ruminis ATCC 25644] gi|323091538|gb|EFZ34162.1| replicative DNA helicase DnaB [Lactobacillus ruminis ATCC 25644] Length = 465 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 71/190 (37%), Gaps = 16/190 (8%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + L+ G + + E A+L + + L + +++ + + + Q L+ + Sbjct: 2 NSLDNDLLAGNMPPQDISAEKAILGAIFLNHEALADVMEQVEPDDFYSRQHQILFQSMIE 61 Query: 525 DFVEQKYFLPEEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + +L + G L +L V A +A A IV + Sbjct: 62 LNDADQPIDVLTMKSSLETKNQLDDAGGVAYLAELANSVPSA--RNAAYYAKIVSAKSRL 119 Query: 579 QQALA--------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +Q + K+ + +E E+QI V+ + + ++ EV+ ++ Sbjct: 120 RQLIRTSTDIIALAQKQDDDVENILDEAERQIMDVSERRNKAGFKPIREVVDEVYNHLYD 179 Query: 631 IESQEAMIEG 640 + + ++ I G Sbjct: 180 LSNNKSDITG 189 >gi|241999020|ref|XP_002434153.1| myosin heavy chain, putative [Ixodes scapularis] gi|215495912|gb|EEC05553.1| myosin heavy chain, putative [Ixodes scapularis] Length = 1129 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/211 (13%), Positives = 70/211 (33%), Gaps = 8/211 (3%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 +L Q + + R + + + + + ++ RE L Sbjct: 449 AQKLAAELQDLKLLVEEHMARNAELERKQRRFDGELSTASEGMRQERAQREKVQREKEAL 508 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIH---QRLC-- 542 ++ QE +++ +++L L + F ++ Q L Sbjct: 509 YA--EKLSLEQELSAVRSELDSQHDKLGSLRREMDELSFSSHGEEEVAKLKRGKQELERK 566 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 R E L+ L QV+ E + RQ Y++ ++L + +R + + Sbjct: 567 SREQEEELEDLAGQVQLLEQAKLRLEMALEKQRQEYKREISLREEEMDEARAAASKKLRN 626 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + + E E+ L E+ ++ ++ + Sbjct: 627 LESLLESEQEERQALSRQRQELERRLGELSA 657 >gi|239946610|ref|ZP_04698364.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920886|gb|EER20911.1| MobA/MobL family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 2464 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 66/469 (14%), Positives = 140/469 (29%), Gaps = 65/469 (13%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S N SKG + S G+ F+ S +S++ +A +AG+ Sbjct: 1627 SLSMNLSKGTWIRHSSGQGGNIFGFVQEGASVSKRQSLEIVAELAGIRAESSSYD----- 1681 Query: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 +H L ++R + + + + + + ++ Sbjct: 1682 ----------------YHAHLASSRANKEQAVEQAKQRLASGWLVAQDKINNADIFDPKK 1725 Query: 172 HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESV 231 HL+ ++ + + +++ + R +SK + Sbjct: 1726 HLKGMMQHNIL----------------------EAVYAYKDANDKLLGYVVRFVSKEDGK 1763 Query: 232 KYLNSPETILFHKGKNLYNF---FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 K P T ++ K Y++ + + + SS I++VEG ++ + Sbjct: 1764 K-QTLPVTYCYNAAKEEYSWRLKGFSDKGDKPIFGIEKAICSSKPILIVEGEKAAIAAAK 1822 Query: 289 A-GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 VVS +G + ++ +++ D D PG +AA D Sbjct: 1823 ILPDHEVVSWMGGSNAADKVNWGQLQWRDVIIWSDNDQPGFKAAEVIKD------KLNKV 1876 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + + DP + L E L D L + T + + Sbjct: 1877 NDHIAFVSVVDPTQLKFNGSVH--KDLFPEKWDLADRLPEGMTIANVKEAIENVRAAHLD 1934 Query: 408 LKNCINHIKDQK---------LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 L + I++ R + + + ++ + + Y ++ + Sbjct: 1935 LNQIQSVIQNTNSPHVSQRLFERNIWQEVFKGKIVDAERIKSFSANEYKAASFFSSEESN 1994 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 V K SL +L +L H L E +EL + Sbjct: 1995 NYVKYLEATGKGGVVHDYLKYDSLMYQDILTSLATHDERLSENIKELGN 2043 >gi|240168789|ref|ZP_04747448.1| replicative DNA helicase [Mycobacterium kansasii ATCC 12478] Length = 603 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/175 (12%), Positives = 54/175 (30%), Gaps = 16/175 (9%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P + G+ + E ++L ++ + + + L + Q ++ Sbjct: 10 PGMDAPPPTEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDA 69 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + L RG LL+++ L S A Sbjct: 70 ILDLYGRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGY 119 Query: 582 LALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 A + + R+ E ++ Q AE + +++V + ++ + Sbjct: 120 YASIVAEKAVLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVANRRLSE 174 >gi|257415016|ref|ZP_05592026.1| DNA primase [Roseburia intestinalis L1-82] gi|257200194|gb|EEU98478.1| DNA primase [Roseburia intestinalis L1-82] Length = 145 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 2/102 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C GD + F +AL G E+ +LA G+ K +K + Q Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKPRQKSPE 65 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLG 160 + A +L + + + +D + Sbjct: 66 EQFQEAKSRCFRTLADYLHLLMAWRMDYAPHSPEEAFHHRFV 107 >gi|158320948|ref|YP_001513455.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs] gi|158141147|gb|ABW19459.1| zinc finger CHC2-family protein [Alkaliphilus oremlandii OhILAs] Length = 409 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + + I +I + Q D + N+ K + H N Sbjct: 7 RFTEEQI-QFANNINLLEYAKQSFDVKKVGINSYKIEGHGG----------LHINPETNR 55 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 + CFS G + F+ S++E+V++ Sbjct: 56 WNCFSQSKGGGPIQFVMFTENKSWVEAVKK 85 >gi|225850311|ref|YP_002730545.1| ClpB [Persephonella marina EX-H1] gi|225645726|gb|ACO03912.1| ClpB [Persephonella marina EX-H1] Length = 995 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 17/214 (7%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 R +++ Y RL + VK S + Sbjct: 451 IDEYRKHIEKDPALERRFQPVYVEEPDVETTIEILNALKPRLEKHHGVKIDPSAIEAAA- 509 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS--FLFSDFVEQKYFLPEEIHQRLC 542 L + + + L +L+ +++ + + K + + L Sbjct: 510 -KLTHRYVTDRKLPDKAIDALDQ-ACARKKLKLVYAPPEVIEIERKIKMLDEQIVQASLE 567 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E ++++ + L ++++ + + L +Q EE+E++I Sbjct: 568 GDYEKEAQLKIEKAKLEKELKEVMSKSDSE------------HLKLDQLKKQLEELERRI 615 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + KG+ EK L ++ QI ++E + A Sbjct: 616 IETAEKGDYEKETELKIEKAKLEKQIKELELKIA 649 Score = 42.6 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 30/263 (11%), Positives = 78/263 (29%), Gaps = 47/263 (17%) Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 + ++ LE + D + A++ RL +G Sbjct: 452 DEYRKHIEKDPALERRFQPVYVEEPDVETTIEILNALKPRL----------EKHHGVKID 501 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 +A K + + L + L + P ++ E +++ + Sbjct: 502 PSAIEAAAKLTHRYVTDRKLPDKAIDALDQACARKKLKLVYAPPEVI-EIERKIKMLD-- 558 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 + +E Y ++ ++ + + LK++ + L + + Sbjct: 559 --------EQIVQASLEGDYEKEAQL--KIEKAKLEKELKEVMSKSDSEHLKLDQLKKQL 608 Query: 572 VDVRQ---------GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---------- 612 ++ + Y++ L L +Q +E+E +IA+ T E + Sbjct: 609 EELERRIIETAEKGDYEKETELKIEKAKLEKQIKELELKIAEKTVVSEDDVAEVISDWTG 668 Query: 613 -----KTAILISILHEVHIQIHQ 630 + L + ++H+ Sbjct: 669 IPISRLKEEEMQRLLRLEEELHK 691 Score = 38.7 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 46/124 (37%), Gaps = 10/124 (8%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + K + + L + L+K L+++ D ++ + D+ +++ Sbjct: 21 IAQKQGDKLVDTDHLLLALISKKDSPLIKILEKRGIDTEDLVNKIDSYLKDLYSQINRSV 80 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 Y + +++++Q+ +V E+ + + E+ ++ + + G Sbjct: 81 TEYINY------IKDLQRQLTKVRNDLINIQEELKRVSAEKRELENELR--YEESSFWGG 132 Query: 641 FGKM 644 FG Sbjct: 133 FGSS 136 >gi|312962933|ref|ZP_07777420.1| hypothetical protein PFWH6_4856 [Pseudomonas fluorescens WH6] gi|311282960|gb|EFQ61554.1| hypothetical protein PFWH6_4856 [Pseudomonas fluorescens WH6] Length = 962 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 31 KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88 K +Y A P +K S N SKG + F+ GD + + + G + +E+ Sbjct: 37 KRVDGGKEYTAPNPTRTDKRAGSLKVNLSKGTWADFATGDKGGDLIDLVRYIDGGTDVEA 96 Query: 89 VQRLAAIAGV 98 ++LA + V Sbjct: 97 CKKLADLLSV 106 >gi|145296969|ref|YP_001139790.1| replicative DNA helicase [Corynebacterium glutamicum R] gi|140846889|dbj|BAF55888.1| hypothetical protein [Corynebacterium glutamicum R] Length = 510 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 17/221 (7%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--- 482 + D E + + + R D +G +R + + + ++P Sbjct: 22 DSFADDAHVDVPAPAFEDFSPAQAFGQGTRGGDSQGFKKRGRKDESREYRDFRQPPYDND 81 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P + + L + Q ++ + F + + P + RL Sbjct: 82 AEMGVLGAMLLSPTTVIDILDILTPEDFYRPSHQLIFQAIIDLFSDNRDIDPVIVSGRLD 141 Query: 543 ----------ERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRF 588 +L++ + +E ++ D Q Sbjct: 142 RTNDLDRVGGGAYLHDLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEG 201 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + ++++ V+ K ++E A+L IL E ++ Sbjct: 202 AEIDAVIDRAQQEVFAVSQKNQSEDYAVLADILDETMAELE 242 >gi|19554173|ref|NP_602175.1| replicative DNA helicase [Corynebacterium glutamicum ATCC 13032] gi|62391827|ref|YP_227229.1| replicative DNA helicase [Corynebacterium glutamicum ATCC 13032] gi|21325753|dbj|BAC00374.1| Replicative DNA helicase [Corynebacterium glutamicum ATCC 13032] gi|41222974|emb|CAF18919.1| PUTATIVE REPLICATIVE DNA HELICASE [Corynebacterium glutamicum ATCC 13032] Length = 510 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 17/221 (7%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL--- 482 + D E + + + R D +G +R + + + ++P Sbjct: 22 DSFADDAHVDVPAPAFEDFSPAQAFGQGTRGGDSQGFKKRGRKDESREYRDFRQPPYDND 81 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P + + L + Q ++ + F + + P + RL Sbjct: 82 AEMGVLGAMLLSPTTVIDILDILTPEDFYRPSHQLIFQAIIDLFSDNRDIDPVIVSGRLD 141 Query: 543 ----------ERGFGELLKQLDRQVRDAGLWSATTEANIV----DVRQGYQQALALYKRF 588 +L++ + +E ++ D Q Sbjct: 142 RTNDLDRVGGGAYLHDLIQSVPTAANARYYAEIVSEKAVLRRLVDAGTRVVQLGYEGDEG 201 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + ++++ V+ K ++E A+L IL E ++ Sbjct: 202 AEIDAVIDRAQQEVFAVSQKNQSEDYAVLADILDETMAELE 242 >gi|330858382|ref|YP_004414736.1| Gp32 [Propionibacterium phage PAS50] gi|260066593|gb|ACX30871.1| Gp32 [Propionibacterium phage PAS50] Length = 133 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 N + + CP D+ PS N KG +YC +C V G Sbjct: 27 NPSRNEQHILCPLDDDHQPSMSINLDKGVWYCHTCGVGG 65 >gi|300724453|ref|YP_003713774.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus nematophila ATCC 19061] gi|297630991|emb|CBJ91673.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus nematophila ATCC 19061] Length = 458 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 26/184 (14%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + + E +L L+ Q L + + ++ + + F Sbjct: 12 SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + RL +RG +DR A + + + Y + +A R R L Sbjct: 72 LITLTDRLTQRGH------IDRAGGFAYVAEVSKNTPSAANIEEYARIVAEKSRLRQLMA 125 Query: 594 ------------------QKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIES 633 E+ E+Q+ + KG + L+ + + +I+ Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAERQLFTLAEKGSTRQHQEMTLLQGADSLIAHLERIQG 185 Query: 634 QEAM 637 + + Sbjct: 186 SQGI 189 >gi|108756869|ref|YP_633238.1| replicative DNA helicase [Myxococcus xanthus DK 1622] gi|108460749|gb|ABF85934.1| replicative DNA helicase [Myxococcus xanthus DK 1622] Length = 456 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/189 (9%), Positives = 60/189 (31%), Gaps = 24/189 (12%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +G+ + E A+L ++ ++ + + + + +++ + + Sbjct: 6 EFREGRKVHEDLAAERAVLGAVLADNTLIAAVGEVVHPEDFSSPAHAQIFEAMLKLDGQS 65 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + L G L + L A+ + A+ +R Sbjct: 66 RQVDHLTLAEELKVLGH---LVSVGGPAYLMRLDQVVPIASNAVQYAQIVKDQAIRRRLA 122 Query: 590 LLSRQKEEIEKQ------------------IAQVTAKGEAEKTAILISILHEVHIQIHQI 631 R+ +++ Q +A+ +G+ + L+ ++ + ++ Sbjct: 123 QAGREIQDLASQETGELEVLLDEAERKVFLLAEKKREGDLRPVSELMEHTLDL---LDKM 179 Query: 632 ESQEAMIEG 640 ++ I G Sbjct: 180 KAAATGITG 188 >gi|307592486|ref|YP_003900077.1| DnaB domain-containing protein helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306986131|gb|ADN18011.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC 7822] Length = 1156 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 7/148 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P + + L + QK++ S + + RL Sbjct: 18 AETLILGGILFDPRAIAKVADILTPDNFYAPAHQKIYRVALSLHRSGQPVDLMLVGARLE 77 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G L++ + L + Y + + R L I + I Sbjct: 78 DEGL------LEQVGGVSYLATLIERTVSAANIDRYAAIVVGHGERRELRSLLLTINELI 131 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQ 630 E LI + + Q Sbjct: 132 NDRNYSPS-ELQEKLIEKATALKATVRQ 158 >gi|313115412|ref|ZP_07800882.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255] gi|295103651|emb|CBL01195.1| DNA primase (bacterial type) [Faecalibacterium prausnitzii SL3/3] gi|310622253|gb|EFQ05738.1| CHC2 zinc finger protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 173 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C GD + F +AL G E+ +LA G+ K +K + Q Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKPRQKSPE 65 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + A + L + + + D + A + Sbjct: 66 EQFQEAKNRCFRILTDYLHLLMAWRTDYAPHSPEEAFHPRFVEALQKQD 114 >gi|224369025|ref|YP_002603189.1| putative DNA primase [Desulfobacterium autotrophicum HRM2] gi|224372009|ref|YP_002606174.1| hypothetical protein HRM2_p00160 [Desulfobacterium autotrophicum HRM2] gi|223691742|gb|ACN15025.1| putative DNA primase [Desulfobacterium autotrophicum HRM2] gi|223694728|gb|ACN18010.1| hypothetical protein HRM2_p00160 [Desulfobacterium autotrophicum HRM2] Length = 178 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%) Query: 32 TNAVKGDYWACCPFHDEKTPSFH--CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESV 89 + +G Y CP + F+ N CF+C + + + + SFI+SV Sbjct: 31 SKTQEGCYRFQCPVCNG----FNTGINPKTNLARCFNCQKNYNTIDLVMTVKELSFIDSV 86 Query: 90 QRL-AAIAGVPLPVVDPKIEKKEKIQTD 116 L A +P+P + ++ Sbjct: 87 AYLEALKMTIPVPSREAHSPPPTPNRSR 114 >gi|295837788|ref|ZP_06824721.1| replicative DNA helicase [Streptomyces sp. SPB74] gi|295826670|gb|EFG64971.1| replicative DNA helicase [Streptomyces sp. SPB74] Length = 515 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/193 (11%), Positives = 61/193 (31%), Gaps = 26/193 (13%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 ++ + E ++L ++ + + + L + + ++ + + + Sbjct: 73 PAAFERVPPQDLDAEQSVLGGMLLSKDAIADVVEILKGSDFYRPAHEVVYQAILDLYAKG 132 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + P + L RG ++ + L + + Y + + R Sbjct: 133 EPADPITVAAELTRRG------EITKVGGAPYLHTLVQTVPTAANAEYYAEIVH----ER 182 Query: 590 LLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQI-------------HQIES 633 + R+ E +I Q+ + E + + +V Q ++ Sbjct: 183 AVLRRLVEAGTRITQMGYAADGDVDEIVNNAQAEVFKVTEQRTSEDYLPLGDIMEGALDE 242 Query: 634 QEAMIEGFGKMSG 646 EA+ G+M+G Sbjct: 243 IEAIGSRSGEMTG 255 >gi|255324075|ref|ZP_05365200.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141] gi|311740297|ref|ZP_07714128.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium ATCC 33035] gi|255298932|gb|EET78224.1| replicative DNA helicase [Corynebacterium tuberculostearicum SK141] gi|311304680|gb|EFQ80752.1| replicative DNA helicase DnaB [Corynebacterium pseudogenitalium ATCC 33035] Length = 476 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 19/161 (11%), Positives = 50/161 (31%), Gaps = 11/161 (6%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q+ + + E +L ++ P + E +EL + ++ + Sbjct: 28 QQEEPKRYGEFRQPPADREAEQGVLGAMLLSPHTVMEVIEELEPEDFYYPAHTLIYRAML 87 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E K + +L L+R L + + Y + +A Sbjct: 88 DLYSEGKDVDAVILASQLDR------FNNLERVGGAPYLHTLLATVPTAANARYYAEIVA 141 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623 + + R+ + ++ Q+ G E + ++ + Sbjct: 142 ----EKAVLRKLVDAGTRVVQLGFSGTEDAEIESVLDRAQQ 178 >gi|301057462|ref|ZP_07198560.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300448433|gb|EFK12100.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 108 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 9/93 (9%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHC--NDSK 59 + ++ + +L HIPI+ LI + + + +G + CP E FH N Sbjct: 3 RFTQNELFELRNHIPINALIENRL---KIPSKISEGQFRFLCPLCGE----FHTATNPKT 55 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 CF C + + + SF+E+V L Sbjct: 56 NLARCFRCERNFNTIDMVMTCESTSFVETVHTL 88 >gi|195952509|ref|YP_002120799.1| replicative DNA helicase [Hydrogenobaculum sp. Y04AAS1] gi|195932121|gb|ACG56821.1| replicative DNA helicase [Hydrogenobaculum sp. Y04AAS1] Length = 485 Score = 52.2 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 21/195 (10%), Positives = 63/195 (32%), Gaps = 25/195 (12%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + L+ + + + E ++L +++ + + L + + L+ Sbjct: 2 NNTDTLLNKNSILDIDLPRDEAAERSVLGSMLYDLENIPVVAEVLKEDDFFEPIHSTLFK 61 Query: 521 FLFSDFVEQKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 L + E + + + ++ + + +A + A T+ I Sbjct: 62 LLLEYYFENANLNTIDRVLLKDFIEKKK----ITDIAEDFLEALVLEAVTDIEI------ 111 Query: 578 YQQALALYKRFRLLSRQKEEI-EKQIAQVTAKGEAEKTAILIS-ILHEVHI--------Q 627 Q++ + + + R + K I + ++ I L + + Sbjct: 112 -LQSVIKIIKEKAIQRAIINLGIKIIRETKQTQDSNILIETIQSELINIASDNVNVGYFE 170 Query: 628 IHQ-IESQEAMIEGF 641 + +E+ ++IE F Sbjct: 171 LKDILENVISIIEKF 185 >gi|269958180|ref|YP_003327968.1| hypothetical protein Xcel_3411 [Xylanimonas cellulosilytica DSM 15894] gi|269306861|gb|ACZ32410.1| hypothetical protein Xcel_3411 [Xylanimonas cellulosilytica DSM 15894] Length = 1776 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 15/77 (19%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--- 60 PR + + I + A CP H +KTPS H + +G Sbjct: 17 PRSSLDRVRQTID---------SLGLAVREVRADGFMAACPAHGDKTPSLHVSWVRGQRG 67 Query: 61 ---FYYCFSCHVKGDHL 74 ++C + D + Sbjct: 68 GSVLFHCHASCETQDVI 84 >gi|167770911|ref|ZP_02442964.1| hypothetical protein ANACOL_02264 [Anaerotruncus colihominis DSM 17241] gi|167666951|gb|EDS11081.1| hypothetical protein ANACOL_02264 [Anaerotruncus colihominis DSM 17241] Length = 174 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 2/109 (1%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP--VVDPKIEKKEKIQTDLI 118 Y+CF C GD + F +AL G E+ +LA G+ K +K + Q Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYEDWKPPGKAKKPKSRQKSPE 65 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 + A + L + + + I + A + Sbjct: 66 EQFQEAKNHCFRILADYLHLLRVWRKEYAPHSPEEIFHPRFVEALQKQD 114 >gi|145517734|ref|XP_001444750.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124412172|emb|CAK77353.1| unnamed protein product [Paramecium tetraurelia] Length = 1023 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 35/252 (13%), Positives = 94/252 (37%), Gaps = 12/252 (4%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF---------QKYITEHSGYGR 448 DE ++ + + N + + D ++ + +D++ QL + + G Sbjct: 142 HDELSQAKQTIANYEDQLADLAIKDQVIKEQKDKINQLLVEIEFWKKRYQQLDTDRIKGI 201 Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 K + + L +S ++ + + L L L++ +L Sbjct: 202 EEFKKSSETLRNSQFNELRRSGSMQAQGYQNELKNLRVQLERLQQENNELKDNIHQLESS 261 Query: 509 -RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 N++ +++ + L S E K + + + +K+L+RQV + + Sbjct: 262 KNGQNSQFKEVNTKLESSTKEIKRLNDILLQRGQQNKQLELRIKELERQVSEKNILKEEI 321 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + +Q + + L+ + E+E+ + + +K EK L + + ++ Sbjct: 322 DKLKQQLNDKNKQLQEQHNQITQLNNRIAELERLLQE--SKQYKEKIQQLQTEIAQLKAI 379 Query: 628 IHQIESQEAMIE 639 I + + A+++ Sbjct: 380 IQGKDEEIAILK 391 >gi|184201980|ref|YP_001856187.1| replicative DNA helicase [Kocuria rhizophila DC2201] gi|183582210|dbj|BAG30681.1| replicative DNA helicase [Kocuria rhizophila DC2201] Length = 450 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 24/190 (12%), Positives = 61/190 (32%), Gaps = 22/190 (11%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S G+ + E ++L ++ + + + L + + + ++ + S + Sbjct: 8 SREDYGRTMPHDNQAEQSVLGGMMLSKDAIADVVEVLRGVDFYKPAHENIYDAVVSLYGR 67 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L + G ++++ L ++ A A R Sbjct: 68 GEPADAITVGDELTKNG---EIERIGGIAYLHSLIASVPTAAN-------AGFYAEIVRE 117 Query: 589 RLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ---------IESQEA 636 R + R+ E +I Q+ + + +++V + +E+ Sbjct: 118 RAVLRRLVEAGTKIVQLGYAQDGEVDDIVNEAQGEIYQVAERRTAEDYVPLKDVMEATVD 177 Query: 637 MIEGFGKMSG 646 IE G SG Sbjct: 178 EIEAAGSRSG 187 >gi|121610528|ref|YP_998335.1| ATPase [Verminephrobacter eiseniae EF01-2] gi|121555168|gb|ABM59317.1| ATPase AAA-2 domain protein [Verminephrobacter eiseniae EF01-2] Length = 867 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 2/207 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++K S +++ K ++ + + A++ Sbjct: 317 YRKYIEKDAALERRFQKILVDEPTVEASIAILRGLQEKYEVHHGVDITDPAIVAAAELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554 + +++ I + K+ + S I ++ + Sbjct: 377 RYITDRFLPDKAIDLIDEAASKIKIEMDSKPEVMDKLDRRLIQVQIEREAVRREKDEASQ 436 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ + I D + +Q A + L +++ QI + T KG+ K Sbjct: 437 KRLALIEEEITRLQKEIADYDEIWQAEKAQAQGSAQLREAIDKLRFQIEEFTRKGDFNKV 496 Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEG 640 A L L + Q+ Q ++QEA +G Sbjct: 497 AELQYGQLPALEKQLRQAQAQEAGKDG 523 >gi|301064178|ref|ZP_07204623.1| conserved domain protein [delta proteobacterium NaphS2] gi|300441719|gb|EFK06039.1| conserved domain protein [delta proteobacterium NaphS2] Length = 297 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 94/299 (31%), Gaps = 44/299 (14%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 H + S+ + FS G + F L + E + + G+ PK Sbjct: 1 MHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMTMSEVARWMVKE-GIA-TANHPKS 58 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 K+K + L+ + RGI + G+ P Sbjct: 59 LVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR-----RGISATTCRYLGCGFLPRRS- 112 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + L L I + G+ ++ + Sbjct: 113 -------------WAKTGSPLNSRLVFQVRGVRENGQGLQPVILTHTGRALSME----QE 155 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + KY + P F K +YN L + + + +IL EG+ DV L Sbjct: 156 ELNGKYWSYP----FKKAWEIYNQDNIL-----LDEAALGQTNMFGLILTEGFFDVAKLV 206 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 +AG +N V+ +G A++ Q+ L PRI+L D D G A + + + H Sbjct: 207 EAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILLFLDRDPAGKTGALQVRERLFHH 265 >gi|183980111|ref|YP_001848402.1| replicative DNA helicase DnaB [Mycobacterium marinum M] gi|183173437|gb|ACC38547.1| replicative DNA helicase DnaB [Mycobacterium marinum M] Length = 460 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 3/122 (2%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 16 PPPSEDFGRQPPQDLAAEQSVLGGMLLSKDAVADVLERLRPGDFYRPAHQNIYDAILDLY 75 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L RG LL+++ L S A G AL + Sbjct: 76 GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVGEKALLR 132 Query: 587 RF 588 R Sbjct: 133 RL 134 >gi|150010464|ref|YP_001305207.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|237708337|ref|ZP_04538818.1| DNA primase [Bacteroides sp. 9_1_42FAA] gi|149938888|gb|ABR45585.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|229457558|gb|EEO63279.1| DNA primase [Bacteroides sp. 9_1_42FAA] Length = 295 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + + +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLVDFLAGFGHEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGKGGDIITLAKEI 71 >gi|238926663|ref|ZP_04658423.1| DNA replication protein DnaC [Selenomonas flueggei ATCC 43531] gi|238885609|gb|EEQ49247.1| DNA replication protein DnaC [Selenomonas flueggei ATCC 43531] Length = 448 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 51/151 (33%), Gaps = 10/151 (6%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + +G++ + E ++L ++ P + + + L + + ++ + Sbjct: 6 KENDMPEGRVPPQSIEAELSVLGAMMLKPQAVSQAVELLHADDFYRQAHRAVFEAMEELL 65 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + L + G LD+ + L + T Y + + Sbjct: 66 RNGEPVDIVTVTESLKKSGL------LDQVGGISFLANLTNTVPSTANLAHYAKIV---- 115 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + + + R + +IA + + L Sbjct: 116 KEKAVLRALIDASTEIAGAAYEASEDIAEQL 146 >gi|118615987|ref|YP_904319.1| replicative DNA helicase DnaB [Mycobacterium ulcerans Agy99] gi|118568097|gb|ABL02848.1| replicative DNA helicase DnaB [Mycobacterium ulcerans Agy99] Length = 460 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 38/122 (31%), Gaps = 3/122 (2%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 16 PPPSEDFGRQPPQDLAAEQSVLGGMLLSKDAVADVLERLRPGDFYRPAHQNIYDAILDLY 75 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L RG LL+++ L S A G AL + Sbjct: 76 GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVGEKALLR 132 Query: 587 RF 588 R Sbjct: 133 RL 134 >gi|118092662|ref|XP_421604.2| PREDICTED: similar to KIAA0583 protein [Gallus gallus] Length = 1850 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 86/269 (31%), Gaps = 18/269 (6%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + + + + + + + + ++ + + + Q +R Sbjct: 249 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 308 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 LQ ++ T + +K RD RL+ S + E L + Sbjct: 309 LQSEVTRFKTMQLKAAKDSEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 368 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGEL 549 + + + ++ R + E++ L + E ++ + + + + Sbjct: 369 LKNTS---------SEKRVASEEMEALRQ-----IQDSATLDIERANKEIEMLRKQYEAM 414 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 ++L V++A + + + + + ++ L R+++ +A+ Sbjct: 415 SQELKEAVQEAEVAKCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNL 474 Query: 610 EAEKTAIL--ISILHEVHIQIHQIESQEA 636 + + + L E+ ++ +EA Sbjct: 475 DDMRKQKNDAMRELKELKEKMENQLEKEA 503 >gi|254796909|ref|YP_003081746.1| replicative DNA helicase [Neorickettsia risticii str. Illinois] gi|254590145|gb|ACT69507.1| replicative DNA helicase [Neorickettsia risticii str. Illinois] Length = 494 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 20/182 (10%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ E +L L+ + E + ++ + +K++ L Sbjct: 23 QKALSNSSAELPNNIEAEQLILGALLTNNDACDEIEELISSSSFYAPVHRKIFEVLLHLR 82 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ P + L L + Q + + V Q L + + Sbjct: 83 SKELVANPVTLKNYLES---SNELSAIGGQEYLLNIIEKASIVVDVSSLARVIQELYIRR 139 Query: 587 RFRLL-----------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + +L S Q EE E + Q+ + GE + + + IS E+ ++ Sbjct: 140 QLIVLAQKIISGATGEQSNTTTSEQIEEAEHSLFQLASSGELDPSCLHISKPIEIAVERA 199 Query: 630 QI 631 +I Sbjct: 200 KI 201 >gi|317496119|ref|ZP_07954479.1| replicative DNA helicase [Gemella moribillum M424] gi|316913694|gb|EFV35180.1| replicative DNA helicase [Gemella moribillum M424] Length = 453 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 10/155 (6%) Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 L E +LL L+ P L E + + + + + ++S + I Sbjct: 6 DSVLLAEQSLLGALMQEPEKLIEVKATVDPEDFYDEKNKDIYSAILRLDEAGILPDTTTI 65 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + + G K +D + ++ T A + L KR + R+ Sbjct: 66 FEEINNSG---AFKNVDASLYIVDVYDVTPSA------RNIMHYANLVKR-YSIYREIRG 115 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + +G A+ A+ ++ +V + + + Sbjct: 116 ALLSSTEEMNQGNADIDALTSTLFDQVERAMERAK 150 >gi|332232530|ref|XP_003265457.1| PREDICTED: leucine zipper putative tumor suppressor 1 [Nomascus leucogenys] Length = 596 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 85/250 (34%), Gaps = 29/250 (11%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R + + + L + G K ++ + SQR Q ++ Sbjct: 279 KLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGSKLKQASQKSQRAQQVLHLQVLQL 338 Query: 478 KKPSLREAALLLTLINHPAILQEQYQ-----------ELADIRYDNNELQKLWSFLFSDF 526 ++ + L +L+ +L+ + + L + +++ + L S + Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVRPRRALISVIHQQL 398 Query: 527 VE------QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 E K + +L + G + L+ +R GL E +++ Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QI 631 + +A L ++ LL ++ +E+ Q A G E L L + ++ + Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELERLRAELREER 515 Query: 632 ESQEAMIEGF 641 + + M GF Sbjct: 516 QGHDQMSSGF 525 >gi|116174728|ref|NP_001070680.1| dynactin 1a [Danio rerio] gi|75914611|gb|ABA29740.1| dynactin 1a [Danio rerio] Length = 1218 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 31/316 (9%) Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 K ++ L + + D ++ K A E L + + +M + Sbjct: 195 KEMEKYKIQLEQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIE 254 Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 + + E L+ +K++ + L + E G Sbjct: 255 MATLDKEMAEERAESLQQETESLKEKL----------EELTMDMEILKHEIEEKGSDGAA 304 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-AD 507 ++ H Q ++ +LV+ + +E L + L+ Q ++L + Sbjct: 305 SSYHVKQLEEQNARLKEALVRMRDLSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEE 364 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSA 565 ++ + + +L + + EE+ + L ER E +++L V D + Sbjct: 365 MKLAEDTIDELKEQVDAALGA------EEMVETLTERNLDLEEKVRELRETVSDLESINE 418 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISI 620 + + R+ L L ++ L + E +K++ K L + Sbjct: 419 MNDELQENARET---ELELREQLDLAGARVREAQKRVEAAQETLADYQQTINKYRELTTH 475 Query: 621 LHEVHIQIHQIESQEA 636 L EV+ ++ +S A Sbjct: 476 LQEVNRELTNQQSSSA 491 Score = 39.5 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%) Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 +++ LR + + ++L+ L K + + K + + ++ + Sbjct: 158 APATPSKEEESLRAQ-LKDLEEKLETLRMKRSEDKAKLKEMEKYKIQLEQLQEWRSKMQE 216 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 K K+ L + + + + D + + E Sbjct: 217 QQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLD--------KEMAEERAE 268 Query: 529 QKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + ++L E E+LK + G S+ + + ++AL + Sbjct: 269 SLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEEQNARLKEALVRMRD 328 Query: 588 FRLLSRQKE-EIEKQIAQVTAKGE-----AEKTAILISI----LHEVHIQIHQIESQEAM 637 +Q+ +++KQ+ + ++ E EK + + + E+ Q+ E M Sbjct: 329 LSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEEMKLAEDTIDELKEQVDAALGAEEM 388 Query: 638 IE 639 +E Sbjct: 389 VE 390 >gi|319950612|ref|ZP_08024519.1| replicative DNA helicase [Dietzia cinnamea P4] gi|319435720|gb|EFV90933.1| replicative DNA helicase [Dietzia cinnamea P4] Length = 607 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 15/160 (9%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G+ + E ++L ++ + + +E+ + Q ++ + + + Sbjct: 25 GRTPPQDLTAEQSVLGGMLLSKDAIADVVEEIQPGDFYKPAHQAIYDVILDLYARGEPAD 84 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L RG L R L + + Y Q +A + + R Sbjct: 85 AVTVAAELDRRG------DLRRAGGAPYLHTLISTVPTAANAGYYAQIVA----EKAVLR 134 Query: 594 QKEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQI 628 + + +I Q G E + + EV + Sbjct: 135 RLVDAGTRIVQYGYSGSEGSDVAEVVDRAQAEIFEVTERR 174 >gi|300724355|ref|YP_003713673.1| replicative DNA helicase [Xenorhabdus nematophila ATCC 19061] gi|297630890|emb|CBJ91567.1| replicative DNA helicase [Xenorhabdus nematophila ATCC 19061] Length = 458 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 55/184 (29%), Gaps = 26/184 (14%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + + E +L LI L + + L+ + + F Sbjct: 12 SEEAPSYAYAEVGVLGGLILENDRWDSVELLLVADDFYFPAHRILFQAIAELSEQNCPFD 71 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + RL +RG +DR A + + + Y + +A R R L Sbjct: 72 LITLTDRLTQRGH------IDRAGGFAYVAEVSKNTPSAANIEEYARIVAEKSRLRQLMA 125 Query: 594 ------------------QKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIES 633 E+ E+Q+ + KG + L+ + + +I+ Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAERQLFTLAEKGSTRQHQEMTLLQGADSLIAHLERIQG 185 Query: 634 QEAM 637 + + Sbjct: 186 SQGI 189 >gi|194396803|ref|YP_002037974.1| Tn5253 hypothetical protein [Streptococcus pneumoniae G54] gi|194356470|gb|ACF54918.1| Tn5253 conserved hypothetical protein [Streptococcus pneumoniae G54] Length = 361 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 18/125 (14%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I++ I I ++ + + + + ++ + P HD SF + + FS Sbjct: 3 IEECK-KISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSTTNTFKWFS 51 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ---TDLIRLIEV 123 ++GD + F+ + G SF E++ L+ P + +++ + Sbjct: 52 RDIQGDVIDFVRLVKGISFKEALAFLSEE---PFQKETVQEKRERPFYYPLKRIEDSHCS 108 Query: 124 ATDFF 128 ++ Sbjct: 109 LARYY 113 >gi|167764640|ref|ZP_02436761.1| hypothetical protein BACSTE_03030 [Bacteroides stercoris ATCC 43183] gi|167697309|gb|EDS13888.1| hypothetical protein BACSTE_03030 [Bacteroides stercoris ATCC 43183] Length = 295 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + + +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLVDFLAGFGHEPVIQRGNSV-----WYKSPFRTEKEASFKVDLHKELWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGKGGDIITLAKEI 71 >gi|319763932|ref|YP_004127869.1| ATP-dependent chaperone clpb [Alicycliphilus denitrificans BC] gi|330823804|ref|YP_004387107.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601] gi|317118493|gb|ADV00982.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans BC] gi|329309176|gb|AEB83591.1| ATP-dependent chaperone ClpB [Alicycliphilus denitrificans K601] Length = 867 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 74/204 (36%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ V+ + + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKVLVEEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553 I + I + ++ + S I ++ E + Sbjct: 377 RYITDRFLPD-KAIDLIDEAAARIKIEIDSKPEALDKLERRMIQLKIEREAMKKETDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++++ A E D+ + ++ A + + + + I QI + KG+ + Sbjct: 436 QKRLQLIEEELANAEREYADLEEVWKAEKASAQGSEQIRKDIDAIRIQIEDLKRKGDYNR 495 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ ++ + + EA Sbjct: 496 VAELQYGKLPELEKRLKEAQDSEA 519 >gi|298385218|ref|ZP_06994777.1| mobilization protein [Bacteroides sp. 1_1_14] gi|298262362|gb|EFI05227.1| mobilization protein [Bacteroides sp. 1_1_14] Length = 333 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96 P + TPSF + + F G + + GC+ ++ RL Sbjct: 34 SPLRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQDYYSANTF 93 Query: 97 ---GVPLPVVDPKIEKKEK 112 G +P +P E++++ Sbjct: 94 SFQGKNIPEKNPAREERKR 112 >gi|257438054|ref|ZP_05613809.1| DNA primase [Faecalibacterium prausnitzii A2-165] gi|257199714|gb|EEU97998.1| DNA primase [Faecalibacterium prausnitzii A2-165] Length = 173 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 6 RYHCFGCGADGDVIDFTAALYGLGKKEAAVQLAQDFGLSYE 46 >gi|150010083|ref|YP_001304826.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|149938507|gb|ABR45204.1| DNA primase [Parabacteroides distasonis ATCC 8503] Length = 312 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I I++ + Y ++ W PF +E SF N + ++ + Sbjct: 3 IQEAKQ-IRIADYLQSLGYTPVKQQGN-----SLWYKSPFREETEASFKVNTDRNLWFDY 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GLGKGGNII 65 >gi|256005292|ref|ZP_05430258.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum DSM 2360] gi|255990728|gb|EEU00844.1| Helix-turn-helix type 11 domain protein [Clostridium thermocellum DSM 2360] gi|316939537|gb|ADU73571.1| regulatory protein DeoR [Clostridium thermocellum DSM 1313] Length = 675 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 53/388 (13%), Positives = 91/388 (23%), Gaps = 64/388 (16%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 C +HD++ PS N GFY C C FL + AG+ Sbjct: 45 CLYHDDRKPSATVNVKSGFYVCHVCG-SFSPYRFLVEI---------------AGIAPED 88 Query: 103 VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYA 162 +L E + + I+ K Sbjct: 89 ASYF---INDYLRELYVKDERTGSYLRAFPHYDPSHTYIPTPGQEEEFEEFIKEAKARLR 145 Query: 163 PDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGG 222 P+ + E + D A + RG++ A G Sbjct: 146 PELPIVQEYITARGIKYEMLERFEWGYVPHDEEAGQVECL-----VVPFRVRGKIRAIRG 200 Query: 223 RTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMD 282 R GA+ + S+ S ++VEG D Sbjct: 201 RAYD-----------------------GRKGAVKNSRFSLWNLDSLEGKSQAVIVEGESD 237 Query: 283 VL----SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338 L +L GV V S+ + + ++ I L DD A+ ++ Sbjct: 238 ALRTIQALEACGVDIPVVSVPGNNFRKEWKREFEGIRTIYLIPQDDDASANFVRSALAVL 297 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 + + G+D ++ D Sbjct: 298 GEERCKVVELPWKRGDVGKDICEWLTRNN-------------HTDQELVELIPLEEHQDR 344 Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQ 426 R L D ++ ++ Sbjct: 345 FSRYYRVEELLKREPAEPDWLVKGMIAR 372 >gi|111020417|ref|YP_703389.1| replicative DNA helicase [Rhodococcus jostii RHA1] gi|110819947|gb|ABG95231.1| replicative DNA helicase [Rhodococcus jostii RHA1] Length = 469 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + P + G+ + E ++L ++ + + + L + Sbjct: 13 RGRSEYPGPPDAEPGEEFGRQPPQDMAAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAH 72 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 Q ++ + + + P + L RG +L R L + T Sbjct: 73 QSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANA 126 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 Y + +A + + R+ + +I Q + AE + + EV + Sbjct: 127 GYYAEIVA----EKAILRRLVDAGTRIVQYGYTGADGQDVAEVVDRAQAEIFEVTERR 180 >gi|78043236|ref|YP_358913.1| replicative DNA helicase [Carboxydothermus hydrogenoformans Z-2901] gi|77995351|gb|ABB14250.1| replicative DNA helicase [Carboxydothermus hydrogenoformans Z-2901] Length = 443 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L T++++ L + + L + + L+ + + + + + L Sbjct: 14 AEQAVLGTILSNGESLYKVIEILKPEDFYRESHKLLYQVMLELNEKGEPITILTVTEALK 73 Query: 543 ERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 ++G E + L + + A I++ + + + L ++ + LS ++ Sbjct: 74 QKGDLERAGGVSYIASLLAMAVPEA--TLESHAEIIEEKAVLRHLIDLSEKIKRLSYTEK 131 Query: 597 EIEKQIAQVTA 607 + E + + Sbjct: 132 DAESILEEAER 142 >gi|301311831|ref|ZP_07217753.1| putative transposon-related/mobilization protein [Bacteroides sp. 20_3] gi|300829933|gb|EFK60581.1| putative transposon-related/mobilization protein [Bacteroides sp. 20_3] Length = 333 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96 P + TPSF + + F G + + GC+ ++ RL Sbjct: 34 SPLRQDDTPSFKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQDYYSANTF 93 Query: 97 ---GVPLPVVDPKIEKKEK 112 G +P +P E++++ Sbjct: 94 SFQGKNIPEKNPAREERKR 112 >gi|290474581|ref|YP_003467461.1| replicative DNA helicase [Xenorhabdus bovienii SS-2004] gi|289173894|emb|CBJ80681.1| replicative DNA helicase [Xenorhabdus bovienii SS-2004] Length = 459 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + + E +L L+ Q L + + ++ + + F Sbjct: 12 SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + RL +RG Q+DR A + + Y + +A R R L Sbjct: 72 LITLTDRLTQRG------QIDRACGFAYVAEVCKNTPSAANIEEYARIVAEKSRLRQLLA 125 Query: 594 QKEEIEKQIAQVTAKGE---AEKTAILISILHE----VHIQIHQIESQEAMI 638 + + + Q + + + + L ++ + H ++ ++ +++I Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAESQLFNLAEKGSTRQHQEMTLLQGADSLI 177 >gi|290476348|ref|YP_003469252.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus bovienii SS-2004] gi|289175685|emb|CBJ82488.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus bovienii SS-2004] Length = 458 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 13/172 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + + E +L L+ Q L + + ++ + + F Sbjct: 12 SEEAPSYAYAEVGVLGGLVLENERWDSVVQLLVADDFYFPAHRIIFQAIAELSEKNCPFD 71 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + RL +RG Q+DR A + + Y + +A R R L Sbjct: 72 LITLTDRLTQRG------QIDRACGFAYVAEVCKNTPSAANIEEYARIVAEKSRLRQLLA 125 Query: 594 QKEEIEKQIAQVTAKGE---AEKTAILISILHE----VHIQIHQIESQEAMI 638 + + + Q + + + + L ++ + H ++ ++ +++I Sbjct: 126 LGKSLSADVFQPNIQSDTLIEQAESQLFNLAEKGSTRQHQEMTLLQGADSLI 177 >gi|254773124|ref|ZP_05214640.1| replicative DNA helicase [Mycobacterium avium subsp. avium ATCC 25291] Length = 785 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E A+L ++ + + + L + Q ++ + + Sbjct: 5 SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L LL+++ L S A GY + Sbjct: 65 RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 114 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + L R+ E ++ Q AE + ++EV + Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 160 >gi|149066032|gb|EDM15905.1| myosin, heavy polypeptide 9, non-muscle [Rattus norvegicus] Length = 1960 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ + E E ++ ELE + +++++ Sbjct: 870 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 930 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E L + + L KL + +D E ++ Sbjct: 990 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + ++ ++ ++++ Sbjct: 1101 MALKKIRELETQISELQEDLESERACRNKAEKQKRDLGEELEALKTE 1147 Score = 38.3 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 70/227 (30%), Gaps = 15/227 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + ++ + + +R+ +L + K +D + ++ K Sbjct: 1579 QSEEKKKQLVRQVREMEAELEDERKQRSIAMAARKKLEMDLKDLEAHIDTANKNREEAIK 1638 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +K + + L + + LA + + +L+ + + + E Sbjct: 1639 QLRKLQAQMKDCMREL---DDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERA 1695 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + EL ++ L + Q ++ L++ + Sbjct: 1696 KRQAQ---QERDELADEIANSSGKGALALEEKRRLEARIAQLEEELEEEQGNTELINDRL 1752 Query: 596 EEIEKQIAQVTAKGEAEKT---------AILISILHEVHIQIHQIES 633 ++ QI Q+ E++ L E+ ++ ++ES Sbjct: 1753 KKANLQIDQINTDLNLERSHAQKNENARQQLERQNKELKAKLQEMES 1799 >gi|118463867|ref|YP_879378.1| replicative DNA helicase [Mycobacterium avium 104] gi|12958160|gb|AAK09265.1| DnaB precursor [Mycobacterium avium] gi|118165154|gb|ABK66051.1| replicative DNA helicase [Mycobacterium avium 104] Length = 795 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E A+L ++ + + + L + Q ++ + + Sbjct: 15 SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L LL+++ L S A GY + Sbjct: 75 RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + L R+ E ++ Q AE + ++EV + Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 170 >gi|41406169|ref|NP_959005.1| hypothetical protein MAP0071 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394517|gb|AAS02388.1| DnaB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 875 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E A+L ++ + + + L + Q ++ + + Sbjct: 15 SPSEDFGRQPPQDLAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L LL+++ L S A GY + Sbjct: 75 RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + L R+ E ++ Q AE + ++EV + Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVAERR 170 >gi|6981236|ref|NP_037326.1| myosin-9 [Rattus norvegicus] gi|13431671|sp|Q62812|MYH9_RAT RecName: Full=Myosin-9; AltName: Full=Cellular myosin heavy chain, type A; AltName: Full=Myosin heavy chain 9; AltName: Full=Myosin heavy chain, non-muscle IIa; AltName: Full=Non-muscle myosin heavy chain A; Short=NMMHC-A; AltName: Full=Non-muscle myosin heavy chain IIa; Short=NMMHC II-a; Short=NMMHC-IIA gi|967249|gb|AAA74950.1| nonmuscle myosin heavy chain-A [Rattus norvegicus] Length = 1961 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ E E ++ ELE + +++++ Sbjct: 870 EMETMQSQLMAEKLQLQEQLQAKTELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 929 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 930 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 989 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E +L + + L KL + +D E ++ Sbjct: 990 LAKEKKLLE------DRVAEFTTDLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 1043 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 1044 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 1100 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + ++ ++ ++++ Sbjct: 1101 MALKKIRELETQISELQEDLESERACRNKAEKQKRDLGEELEALKTE 1147 >gi|312880251|ref|ZP_07740051.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260] gi|310783542|gb|EFQ23940.1| ATP-dependent chaperone ClpB [Aminomonas paucivorans DSM 12260] Length = 872 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 73/199 (36%), Gaps = 2/199 (1%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 + ++ +I + + R ++ + +++ + ++ +++ AL+ + Sbjct: 322 EEYRTHIEKDAALERRFQPVLVEPPDVEDTVSILRGLKDRFQVHHGVRIQDNALVAAAVL 381 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + +++ I + ++ + + S E L + + E G+ + Sbjct: 382 SQRYISDRFLPDKAIDLVDEACAQIRTEIDSMPAELDAALRRVMQLEIEEAALGKESDKA 441 Query: 554 DRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 R+ + A + +++ Y++ R L ++ EE ++I Q + Sbjct: 442 SRERLGQIRRELADQRSVADELQAQYEREKQAIAEVRALRKEIEETRRRIEQAERVYDLN 501 Query: 613 KTAIL-ISILHEVHIQIHQ 630 A L L E+ ++ + Sbjct: 502 LAAQLRHGELPELEKKLRE 520 >gi|223985944|ref|ZP_03635980.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM 12042] gi|223962131|gb|EEF66607.1| hypothetical protein HOLDEFILI_03286 [Holdemania filiformis DSM 12042] Length = 633 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 30/144 (20%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + Q R H+ S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQSQGEQLIRAGNEYRWKR-------HN----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104 +Y S G + F+ G SF E+V+ L A+ + LP Sbjct: 49 --WYRHSQSKGGAPIDFVMEFYGKSFTEAVEMLTGEKGAAPPPDRPIPASFSDFRLPPRS 106 Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128 T R+ E + FF Sbjct: 107 TDNRTARNYLTAARRIDEDVSGFF 130 >gi|75812657|ref|YP_320275.1| DnaB helicase [Anabaena variabilis ATCC 29413] gi|75705413|gb|ABA25086.1| DnaB helicase [Anabaena variabilis ATCC 29413] Length = 449 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 50/154 (32%), Gaps = 12/154 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 KL + E A+L ++ P + L + + + ++ + K Sbjct: 11 NKLPPQNIEAEEAILGGILLDPDAISRVSDRLVPEAFYISAHKDIYQAAVRLHAQDKPTD 70 Query: 534 PEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQAL 582 + L +R L+ + V L E + ++ + + + Sbjct: 71 LLSVTSWLTDRDLLFRIGGRNKLATLVDRTVSAVNIDALAVLVMEKYLRRELIKAGNEIV 130 Query: 583 AL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 L + + +++Q E E +I ++ A + Sbjct: 131 HLAHDQEEEIAKQLETAESKILEINNSAIASTSQ 164 >gi|302669056|ref|YP_003832881.1| hypothetical protein bpr_II362 [Butyrivibrio proteoclasticus B316] gi|302397396|gb|ADL36299.1| hypothetical protein bpr_II362 [Butyrivibrio proteoclasticus B316] Length = 255 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 45/98 (45%), Gaps = 12/98 (12%) Query: 6 DFIKDLLIHIPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKT-PSFHCNDSKGF 61 ++ +++ +PI + ++G +++ R+ + P H+++ S G Sbjct: 5 EWKEEIKE-VPIEDCCEMLG--IEYRRQGSLLSIL---CPNPAHNDQHYGSCFI--KNGR 56 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 Y C++C GD++ + + S+ E+ +A A +P Sbjct: 57 YTCYACGDHGDNIKLVQNVKMMSYQEATHMIARYANIP 94 >gi|308373875|ref|ZP_07433957.2| replicative DNA helicase [Mycobacterium tuberculosis SUMu006] gi|308343945|gb|EFP32796.1| replicative DNA helicase [Mycobacterium tuberculosis SUMu006] Length = 864 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 5 PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L RG LL+++ L S A A Sbjct: 65 RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 + L R+ E ++ Q AE + +++V ++ + Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163 >gi|294995674|ref|ZP_06801365.1| replicative DNA helicase [Mycobacterium tuberculosis 210] Length = 534 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 5 PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L RG LL+++ L S A A Sbjct: 65 RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 + L R+ E ++ Q AE + +++V ++ + Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163 >gi|170288201|ref|YP_001738439.1| hypothetical protein TRQ2_0400 [Thermotoga sp. RQ2] gi|170175704|gb|ACB08756.1| conserved hypothetical protein [Thermotoga sp. RQ2] Length = 758 Score = 51.8 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 89/265 (33%), Gaps = 17/265 (6%) Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434 P + E + L+ L + + I + + + L + Sbjct: 55 ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 ++ N ++ L + + + +LLL L Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + ++ ++ ++L F +K I R+ E L +++ Sbjct: 172 KELSRDLQEK-----------RRLLEEEIDRFESEKSERLSSIEARINE--MKAELLRVE 218 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ + +A +E + + + Q+ L +R + L ++ E +E++ + + Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278 Query: 615 AILISILHEVHIQIHQIESQEAMIE 639 +S L E+ +++ ++ Q ++E Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +R +L +L + + + ++ + + + + ++ L + + Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544 + L + + ++ + + + EL L S + + K EE+ + R E Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILKSSV-EASLSAKKKNLEELQEYSREQEE 513 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 LK++ +E + +R ++ L K L ++ K+ + Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631 + + + L + ++ ++ ++ Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590 >gi|269122498|ref|YP_003310675.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386] gi|268616376|gb|ACZ10744.1| TOPRIM domain protein [Sebaldella termitidis ATCC 33386] Length = 607 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 123/403 (30%), Gaps = 94/403 (23%) Query: 16 PISNLIGQYV-DWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGFYYCF--SCHVKG 71 I + I +++ ++ + AV CPF +K F+ N G Y CF SC KG Sbjct: 2 NIEDFIKEHLGEYRIKGKEAVIR----ICPFCGRDKN-KFYMNIETGLYNCFSGSCGEKG 56 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 ++ L G+ V +EK E T+ I L Sbjct: 57 T----------------IETLMKHLGINQKVKKKPVEKSEIRNTEKIELNRE-------- 92 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 + + L E L +G S E E + + Sbjct: 93 --------------------NYSSIGVLKENKIISKKQAEFLENRGISWETAAEMDVWVR 132 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 + + I ++ +V+A R ++K + + LF+ + Sbjct: 133 R----------SDGWLTFIYRNKKRVLAVKYRDINKKDFRLTKSEDINPLFNIHRV---- 178 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQL---- 307 + +I+ EG MDVL+ + G+++ S+ Sbjct: 179 ------------------TGESVIICEGEMDVLACAEVGMKDKAVSVPNGTNNLGWIEYN 220 Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 + I+L FD D G +A + + + + ++ + +D + + G Sbjct: 221 WDFLESKKEIILAFDNDTAGEKAIKEVLKRLDI-----TKCRYLDMKGEKDLNDILINLG 275 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 K ++ L + T + E E+ + Sbjct: 276 KVELLNILNNPLEFEIEGLQDITNEKMDTGSTEAIFFEMESLD 318 >gi|301312478|ref|ZP_07218392.1| DNA primase [Bacteroides sp. 20_3] gi|300829544|gb|EFK60200.1| DNA primase [Bacteroides sp. 20_3] Length = 287 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 W PF EK SF + K +Y F GD ++ + Sbjct: 31 WYKSPFRTEKEASFKVDLHKELWYDFGLGKGGDIITLAKEI 71 >gi|256086973|ref|XP_002579656.1| myosin heavy chain [Schistosoma mansoni] gi|238665124|emb|CAZ35895.1| myosin heavy chain, putative [Schistosoma mansoni] Length = 1193 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 888 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 948 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136 >gi|301062051|ref|ZP_07202757.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300443846|gb|EFK07905.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 312 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 55/299 (18%), Positives = 94/299 (31%), Gaps = 44/299 (14%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSF-----LSALLGCSFIESVQRLAAIAGVPLPVVDPKI 107 H + S+ + FS G + F L + E + + G+ PK Sbjct: 1 MHVSLSENIFKDFSSGKGGGIMQFCREMLLQKGREMTMSEVARWMVKE-GIA-TANHPKS 58 Query: 108 EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRY 167 K+K + L+ + RGI + G+ P Sbjct: 59 LVKQKEKAANTGTNPAIKIDLRRYLRTDHPELCR-----RGISATTCRYLGCGFLPRRS- 112 Query: 168 SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 + L L I + G+ ++ + Sbjct: 113 -------------WAKTGSPLNSRLVFQVRGVRENGQGLQPVILTHTGRALSME----QE 155 Query: 228 GESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC 287 + KY + P F K +YN L + + + +IL EG+ DV L Sbjct: 156 ELNGKYWSYP----FKKAWEIYNQDNIL-----LDEAALGQTNMFGLILTEGFFDVAKLV 206 Query: 288 QAGVQNVVSSLGTALTEYQLRLL-----WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 +AG +N V+ +G A++ Q+ L PRI+L D D G A + + + H Sbjct: 207 EAGCRNAVALMGNAISLGQIERLVWIRSRVRFPRILLFLDRDPAGKTGALQVRERLFHH 265 >gi|229587750|ref|YP_002869869.1| hypothetical protein PFLU0174 [Pseudomonas fluorescens SBW25] gi|229359616|emb|CAY46458.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 962 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 8/94 (8%) Query: 10 DLLIHI--PISNLIGQYVDWDRRKTNAVKG-DYWACCPFHDEKTP-SFHCNDSKGFYYCF 65 D+ I ++ ++ G +Y A P +K S N SKG + F Sbjct: 16 DVKSAALKNIDRVLAHWLP---NGKLVDGGKEYTAPNPTRSDKRAGSLKINLSKGTWADF 72 Query: 66 SCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 + GD + + + G + +E+ ++LA + V Sbjct: 73 ATGDKGGDLIDLVRYIDGGTDVEACKKLADLLSV 106 >gi|225389811|ref|ZP_03759535.1| hypothetical protein CLOSTASPAR_03559 [Clostridium asparagiforme DSM 15981] gi|225044121|gb|EEG54367.1| hypothetical protein CLOSTASPAR_03559 [Clostridium asparagiforme DSM 15981] Length = 592 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 55/487 (11%), Positives = 124/487 (25%), Gaps = 61/487 (12%) Query: 2 NYPRDFIKDLLIHIPISNLIGQ-YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 +YP +F I +++ ++ R+++N+V D CPF ++ + N K Sbjct: 3 SYPDEF------PFNIMDVVELLHLRIRRQQSNSVYVD----CPFCGDRRGKMNVNFVKN 52 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-----------IAGVPLPV------- 102 + C C G L + L + ++ +A +G P Sbjct: 53 VWRCNYCGEHGGMLGLYARLNNTTTSDAYWEIAEALCDNCHEEHIRSGNEAPKLTVSTGS 112 Query: 103 -------------VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149 + + + + + + + +RG+ Sbjct: 113 SLSGARADAGCHSTSERKTVPQSEKASPAEIHQTLSLLLAQLTLRPAHREHLRS-PKRGL 171 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATS-YDRFRNRLIF 208 IE P R + G D T + + + ++ Sbjct: 172 SDEQIESLGFKSTPPPFLCRSITARLIKMGCKVEGVPGFYRDDCGYWTMAFYKKTSGILI 231 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN-YLQKSIRKDVR 267 P G++ F + + + PE ++ + S V Sbjct: 232 PAVGFDGRLQGF--QIMLDVPLKDKDDPPEKAG--AKYIWFSSSSKRDGASSGSPVHLVG 287 Query: 268 RNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW-----KLSPRIVLCFD 322 S+ + ++EG + +++ A L L+ + I+ D Sbjct: 288 DPSARVVYVIEGLLKADISHCLT-GRTFAAIAGANNTSPLDPLFALLAQSGTEEIIEAHD 346 Query: 323 GDDPGLRAAYKAI-DLVLCHLIPGNRVNFVLLSRG----EDPDSFIRCYGKTAFEKLIVE 377 D + + L G + + +D +R + E Sbjct: 347 MDKYNNQMTMAGASKIYLTARKYGMNCRRLTWNPNYKGFDDWQLALRRENQRRKELERKT 406 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 W + + + + + R+ L L + Sbjct: 407 FKEQYLNGWCELAHIEDCTEQWQHRAESNIGLTEYLGLTRE-EHETFLRHGREALGVLLE 465 Query: 438 KYITEHS 444 Sbjct: 466 PQRRSQR 472 >gi|215448333|ref|ZP_03435085.1| replicative DNA helicase [Mycobacterium tuberculosis T85] Length = 451 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 52/169 (30%), Gaps = 16/169 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 5 PPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 64 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L RG LL+++ L S A A Sbjct: 65 RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAAN-------AGYYASIVA 114 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEV-HIQIHQ 630 + L R+ E ++ Q AE + +++V ++ + Sbjct: 115 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYDVADRRLSE 163 >gi|83745772|ref|ZP_00942829.1| hypothetical protein RRSL_04435 [Ralstonia solanacearum UW551] gi|207743687|ref|YP_002260079.1| hypothetical protein RSIPO_01871 [Ralstonia solanacearum IPO1609] gi|83727462|gb|EAP74583.1| hypothetical protein RRSL_04435 [Ralstonia solanacearum UW551] gi|206595086|emb|CAQ62013.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 932 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 44/397 (11%), Positives = 102/397 (25%), Gaps = 34/397 (8%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 L I + +L ++ R P H ++ S + + +S Sbjct: 14 DQLKRDIDLHDL-ADRLNLRRSGAKGNYH-----SPHHTDRGASLSIFERGRAWKDWSAE 67 Query: 69 VKGDHLSFLSAL--LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI----RLIE 122 G + + + +E+ + L G+P+P K + I + Sbjct: 68 AGGSCIDLVQHCLPDVATPMEAAKLLGHWYGIPMPAAPASALLARKSTEEYIAERAQANP 127 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEK 182 + S + + + + +A K+ + + Sbjct: 128 EPAVAYLAS-RGIDEAVSRRAIQAGTLGWNAWNSPKVPAGEAGHGGPAAAFIVRAMDSAR 186 Query: 183 IIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILF 242 ++ L + G R L +V + SP L Sbjct: 187 VVAVDLRYADPALNGNVKTQCQG------DKLGHGWTSDARRLRHAHTVYIVESPINALS 240 Query: 243 HKGKNLYN--FFGALNYLQKSIRKDVRRNSSSFIILVEGYMD-----------VLSLCQA 289 + +L N AL + + D +++ + D + + + Sbjct: 241 VECCHLPNGVAVFALRGIANVDKIDWSFLRGKRVVIALDHTDPVNERTGQRPGLAAAWKL 300 Query: 290 GVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG--NR 347 + +G+ L + Q + ++ + R L+ G Sbjct: 301 SEALTAADIGSMLVDMQDWEEGEDINDVLQTHGAGELTARMRRLEAWLIPGMPGGGERLA 360 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM 384 + D + R K F + + + D Sbjct: 361 GTRRVFLPPHDFGIYWRFRVKEDFTQYVQKFKDADDE 397 >gi|159026800|emb|CAO86645.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 692 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 83/221 (37%), Gaps = 16/221 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + +++ + ++ + + AL+ + Sbjct: 141 YRKYIEKDAALERRFQEVLVDEPNVVDTISILRGLKERYEVHHGVKIADNALVAAALLSN 200 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLC-----ERGFG 547 + +++ I + KL + S E + + +RL + Sbjct: 201 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQREYDPASR 260 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L++L++++ + + + +Q + + R + E++ +I Q Sbjct: 261 ERLEKLEKELANLKEEQSG-------LNAQWQGEKEIIDKVRGVKEAIEQVNLEIQQAER 313 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + + A L L ++ Q+ +E+Q A + GK R Sbjct: 314 DYDYNRAAELKFGKLTDLQRQMSALETQLADKQTTGKSLLR 354 >gi|154147933|ref|YP_001405763.1| hypothetical protein CHAB381_0154 [Campylobacter hominis ATCC BAA-381] gi|153803942|gb|ABS50949.1| hypothetical protein CHAB381_0154 [Campylobacter hominis ATCC BAA-381] Length = 335 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 89/324 (27%), Gaps = 46/324 (14%) Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106 DE TPS N G F GD + FL ++ ++++++ + Sbjct: 29 DEHTPSASINPKDGKIKDFGSGWYGDIVDFLVEFHNYQQKDAFRKISSMLNLNTDNSFTN 88 Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 + E I+ + + + +Y+ + ID+ E + Sbjct: 89 FKSYENIKKE--------------------NSSMPHYISQSIIDNFQKERKENFSRFWEL 128 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 S K E + + Y + +RLI PI+ G + F Sbjct: 129 LSQTMPTANKEQKREIAKKYEIG---------YSKKADRLIMPIKDENGNCLTF----WK 175 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDV-LS 285 + + + K +++ L + ++ I ++EG D + Sbjct: 176 YNPTPTPFIGSDGGVIQLPKVMFSKNRQR-TLFDIKNLEKFSKNNEPIFILEGEKDCLNA 234 Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDG-----------DDPGLRAAYKA 334 L + S + L I FD D G+ + Sbjct: 235 LANGFNAITLGSATQNIDNKFLNYFKDKYVVIAYDFDESGKNGSKILEKDLKGITKKTEI 294 Query: 335 IDLVLCHLIPGNRVNFVLLSRGED 358 ID G D Sbjct: 295 IDWEKIAKKLGFTDKLKKGFDFTD 318 >gi|67920334|ref|ZP_00513854.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501] gi|67857818|gb|EAM53057.1| Protein splicing (intein) site [Crocosphaera watsonii WH 8501] Length = 941 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 62/187 (33%), Gaps = 15/187 (8%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + L + E ++L ++ P + ++ + ++++ + + + Sbjct: 3 ISQALPPQNIEAEESILGGILLDPEAMGRVVDLISPEAFYVQSHKEIYQAALRLYGQGEP 62 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-----------IVDVRQGYQQ 580 + L + E + L++ + + + + + Sbjct: 63 TDFLTVKSTLEDYNLLEQVGGLNKLTQLLDRTVSAVNIDRYAALVMDKYLRRQLISAGHE 122 Query: 581 ALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + L ++ + L +E EK+I +T K E L + + ++ ++ Q + Sbjct: 123 IVDLGFETSQQLEIVLDESEKKIFALTQKRPQEGLIPLSDTIIKTFNELEKLHEQTTLP- 181 Query: 640 GFGKMSG 646 G SG Sbjct: 182 --GIESG 186 >gi|206890471|ref|YP_002248184.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742409|gb|ACI21466.1| replicative DNA helicase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 460 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 14/184 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E A+L +I + + + ++ + + +K++ + F + + Sbjct: 13 RLPPQSLEAEQAVLGAIILEGESITKAIEIISPEDFYSERHRKIYQAMLELFDKNEPIDL 72 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-----R 589 + + L ++G E L A + + + L R Sbjct: 73 ITLTEHLKDKGELEETGGLGYLSNLATVVPTSANIRYHAKLIREKALLRSVIRACTEIVT 132 Query: 590 LLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQ----IHQIESQEAMIEGFG 642 + + E+ E+ I + ++T + +V Q I + ++A+I G Sbjct: 133 KVYEEPEDAEEMIDYAERLIFEISEKRTNTSFYNMKDVVKQTFKIIESMYEKKAVIT--G 190 Query: 643 KMSG 646 SG Sbjct: 191 VSSG 194 >gi|15602277|ref|NP_245349.1| replicative DNA helicase [Pasteurella multocida subsp. multocida str. Pm70] gi|20137939|sp|Q9CNL6|DNAB_PASMU RecName: Full=Replicative DNA helicase gi|12720663|gb|AAK02496.1| DnaB [Pasteurella multocida subsp. multocida str. Pm70] Length = 467 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 8/128 (6%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + ++ L +G + E ++L ++ HPA L + + ++ Sbjct: 3 KKNAQIPSKPLEQGIVPPHSLEAEQSVLGGILIHPAHWDSISDMLIADDFYLAAHRVIFQ 62 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV 574 + + + K +++ L E+ E L +L + + + + A IV Sbjct: 63 EMENLLRQGKPIDLINLYEFLREKNLSEDVGGFAYLAELSK--NTPSVSNIVSYAAIVRD 120 Query: 575 RQGYQQAL 582 R + + Sbjct: 121 RAILRDLI 128 >gi|318057454|ref|ZP_07976177.1| AAA ATPase [Streptomyces sp. SA3_actG] gi|318076909|ref|ZP_07984241.1| AAA ATPase [Streptomyces sp. SA3_actF] Length = 504 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 13/140 (9%) Query: 484 EAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E ALL I+ H E + + LW L +Q+ P+ + L Sbjct: 30 ERALLAACIHDKHRREYDEAAAIITRDDFTVPAYAALWDVLGDQIRDQRPTDPDTLRVEL 89 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 RG +L G ++ + + +A+ R R L ++ + Sbjct: 90 DRRG------ELRPFGPGGGHLHEIADSYSGGSAEYFAEAIRRTSRLRNLD----DLTTR 139 Query: 602 IAQVTAKG-EAEKTAILISI 620 I G + E+ LI+ Sbjct: 140 IKAGIHTGRDLEELEALITR 159 >gi|256389562|ref|YP_003111126.1| replicative DNA helicase [Catenulispora acidiphila DSM 44928] gi|256355788|gb|ACU69285.1| replicative DNA helicase [Catenulispora acidiphila DSM 44928] Length = 460 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 16/149 (10%), Positives = 50/149 (33%), Gaps = 10/149 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + E + + I + + ++ + + + P Sbjct: 20 RTPPQDIPAEQSVLGGMLLSKDAIAEVIEVIKAIDFYKPAHEAVFGAILELYGRGEPADP 79 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L ++G + ++ L ++ A GY + + R + R+ Sbjct: 80 VTVAALLTKKGD---INRIGGAPYLHTLINSVPTA----ANAGYYAEI---VKERAVLRR 129 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 E +I Q+ + ++ + Sbjct: 130 LVEAGTRIVQMGYSTDGSDVEQIVDAAQQ 158 >gi|330501638|ref|YP_004378507.1| replicative DNA helicase [Pseudomonas mendocina NK-01] gi|328915924|gb|AEB56755.1| replicative DNA helicase [Pseudomonas mendocina NK-01] Length = 464 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 54/156 (34%), Gaps = 10/156 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ E A+L L+ + ++D+ + ++ + ++ +F + F Sbjct: 18 KVPPHSIEAEQAVLGGLMLDNNAWERVLDGVSDVDFYRHDHRLIFRAIFKLAERNEPFDV 77 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + ++L + G QL + A L V + Y Q + R R R+ Sbjct: 78 VTLSEQLDKEG------QLSQVGGLAYLAELAKNTPSVANIKAYAQII----RERATLRK 127 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 I +IA E ++ + QI + Sbjct: 128 LISISNEIADSAYAPEGRTGEEILDEAERLIFQIAE 163 >gi|321156869|emb|CBW38856.1| putative uncharacterized protein [Streptococcus pneumoniae] Length = 361 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 45/112 (40%), Gaps = 18/112 (16%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I++ I I ++ + + + + ++ + P HD SF + + FS Sbjct: 3 IEECKQ-ISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSTTNTFKWFS 51 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 52 RDIQGDVIDFVRLVKGISFKEALVFLSE------EPFQKEAVQEKRERPFYY 97 >gi|325192663|emb|CCA27084.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1064 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 74/234 (31%), Gaps = 32/234 (13%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+ L ++ + R+++ ++L+ + K + + E LL Sbjct: 388 REGLLAGTRQTWADQGNNLEEKMGIVGRREEEAMPRQLITAEEGKDQHGNGMRILEDRLL 447 Query: 489 LTLINHPAILQEQYQ-ELADIR---YDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-LCE 543 + + + +E + +LA +L+KL E + + + ++ + Sbjct: 448 GIMNQNERLRRENEKFQLAMEESTQLTQTQLEKLRQHYLEVMEETQELNRKLVIEKDYFQ 507 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---- 599 L +LD R + +A E + + QQ + L + L+++ +++ Sbjct: 508 NKLEILAGELDEACRRNEIGTAKLEETHANAEEIIQQNVELTTKNTYLTQEVDDLRDDLD 567 Query: 600 -----------------------KQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + I + + L L V + + Sbjct: 568 TATKALESHAELAEKEGDLRKKSEAIQESLERENIAIRDELTKELESVKKEKNA 621 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 81/245 (33%), Gaps = 8/245 (3%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 D + D + + Q +R + +T+ + K R Sbjct: 567 DTATKALESHAELAEKEGDLRKKSEAIQESLERENIAIRDELTKELESVKKEKNATITRF 626 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE---- 514 Q+ + + + V + + EA L +L A++QE L++I E Sbjct: 627 QQERNAVTEKLNEVSIQNEEHRWRSEA-LQTSLSKSDALVQELEAHLSEISVAKAEVETQ 685 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L + L E + +++ R+ A EAN+ + Sbjct: 686 LSETKKSLSEKLAFATRLQTEHMGIAGKHAEQAAIIENALREAATANNAKRDAEANLEVL 745 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R+ + L+ R L RQK + E ++ + + + + + + +++ + Sbjct: 746 RETMNEV--LHDRDEAL-RQKRQAEDEMEALKRRLSDQLIEVAQQHQIAMENEKKKMQIE 802 Query: 635 EAMIE 639 A IE Sbjct: 803 IARIE 807 >gi|34496096|ref|NP_900311.1| hypothetical protein CV_0641 [Chromobacterium violaceum ATCC 12472] gi|34101950|gb|AAQ58317.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 933 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 13/113 (11%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 L I + +L + +D R+ P H + + S + +S Sbjct: 30 DQLKDSIDLYDLAAR-LDLKRQGKGNYH------SPHHPDSSASLSIFADGRGWKDWSGD 82 Query: 69 VKGDHLSFLS----ALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 G + L L + + + + L G+P P K ++ L Sbjct: 83 AGGSCIDLLRYCRPELD--TPLAAARLLGDWYGMPQPKPAMKERAAPARKSTL 133 >gi|74203133|dbj|BAE26252.1| unnamed protein product [Mus musculus] Length = 737 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 15/227 (6%) Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + + +++R A+ L + + H + + S++ Q Sbjct: 509 PHLQSMPSEQIRNQ-LTAMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQR 567 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528 L + + ++ R +L +E ++ ELQK+ E Sbjct: 568 ILARRQTIEERKERLESL------------NIQREKEELEQREAELQKVRKAEEERLRQE 615 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 K E I Q + + ++L++ + A + +I D+ + + K+ Sbjct: 616 AKEREKERILQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L ++K+E+++++ K + + A L E ++ ++E E Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKREEELREYQERVKKLEEVE 721 Score = 42.2 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E+I +L +L + +R A + E + + V + + ++R + Sbjct: 517 EQIRNQLT--AMSSVLAKALEVIRPAHILQEKEEQHQLAVNAYLKNSRKEHQRILARRQT 574 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 EE ++++ + + E E+ + L +V + QEA Sbjct: 575 IEERKERLESLNIQREKEELEQREAELQKVRKAEEERLRQEA 616 >gi|154492814|ref|ZP_02032440.1| hypothetical protein PARMER_02453 [Parabacteroides merdae ATCC 43184] gi|154087119|gb|EDN86164.1| hypothetical protein PARMER_02453 [Parabacteroides merdae ATCC 43184] Length = 314 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 21 IGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77 IG Y+ + K Y A P+ ++ S + + ++ + + G + + Sbjct: 16 IGDYLHACGIEPAKRYNGYALYHA--PYREDHNASLKVDFRQNLWHDYGTNQGGSIIDLV 73 Query: 78 SALLGCSFIESVQRLAAI 95 + GCS +++ LA Sbjct: 74 MRMQGCSAYKAMAHLAER 91 >gi|260893964|ref|YP_003240061.1| replicative DNA helicase [Ammonifex degensii KC4] gi|260866105|gb|ACX53211.1| replicative DNA helicase [Ammonifex degensii KC4] Length = 441 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 9/151 (5%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E ALL ++ P L + + + ++ + + Sbjct: 2 AQLPQNVSAEQALLGSIFLDPDQLARVEGLVRPEDFYEEAHRAIYEAMLELEDQGLPIDL 61 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L G L++ A L A + + AL + ++ + Sbjct: 62 ITVTEHLRREGK---LEKAGGAAYVASLVDVVPTAAHAEHYAKLVRDKALLRSLVEVATR 118 Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHEV 624 ++ + G+A + + L E+ Sbjct: 119 IRDL-----GLEEAGDARQLLSEAERWLSEL 144 >gi|256086975|ref|XP_002579657.1| myosin heavy chain [Schistosoma mansoni] gi|238665125|emb|CAZ35896.1| myosin heavy chain [Schistosoma mansoni] Length = 1095 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 790 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ N + + L N L KL Sbjct: 850 KDNQIRTLQSEMAQQDEMIGKLNKDKK------NLEEQNKRTQEALQAEEDKVNHLNKLK 903 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 904 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 964 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038 >gi|289579508|ref|YP_003478135.1| replicative DNA helicase [Thermoanaerobacter italicus Ab9] gi|297545631|ref|YP_003677933.1| replicative DNA helicase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289529221|gb|ADD03573.1| replicative DNA helicase [Thermoanaerobacter italicus Ab9] gi|296843406|gb|ADH61922.1| replicative DNA helicase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 442 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E ++L +++ + + + L + +KL+ + F + Sbjct: 4 SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEILKAEDFYKESHKKLFDVMMEMFEKDIPVD 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L +R E + +D + T + A + + R Sbjct: 64 LVTVVDELRKRNMLEAIGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622 + E +I +++ +G+ +T + I+ Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142 >gi|281411756|ref|YP_003345835.1| hypothetical protein Tnap_0317 [Thermotoga naphthophila RKU-10] gi|281372859|gb|ADA66421.1| conserved hypothetical protein [Thermotoga naphthophila RKU-10] Length = 758 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 90/265 (33%), Gaps = 17/265 (6%) Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434 P + E + L+ L + + I + + + L + Sbjct: 55 ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 ++ N ++ L + + + +LLL L Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + ++ ++ ++L + F +K I R+ E L +++ Sbjct: 172 KELSRDLQEK-----------RRLLEEEINRFESEKSERLSSIEARINE--MKAELLRVE 218 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ + +A +E + + + Q+ L +R + L ++ E +E++ + + Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278 Query: 615 AILISILHEVHIQIHQIESQEAMIE 639 +S L E+ +++ ++ Q ++E Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +R +L +L + + + ++ + + + + ++ L + + Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544 + L + + ++ + + + EL L S + + K EE+ + R E Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILRSSV-EASLSAKKKNLEELQEYSREQEE 513 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 LK++ +E + +R ++ L K L ++ K+ + Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631 + + + L + ++ ++ ++ Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590 >gi|148269526|ref|YP_001243986.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1] gi|147735070|gb|ABQ46410.1| hypothetical protein Tpet_0384 [Thermotoga petrophila RKU-1] Length = 758 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 32/265 (12%), Positives = 90/265 (33%), Gaps = 17/265 (6%) Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434 P + E + L+ L + + I + + + L + Sbjct: 55 ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 ++ N ++ L + + + +LLL L Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + ++ ++ ++L + F +K I R+ E L +++ Sbjct: 172 KELSRDLQEK-----------RRLLEEEINRFESEKSERLSSIEARINE--MKAELLRVE 218 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ + +A +E + + + Q+ L +R + L ++ E +E++ + + Sbjct: 219 KELEEIERKTAVSEEKVREAIEIAQKLDYLRERGKELEKEIESLEEKSKDTEERLKTIMK 278 Query: 615 AILISILHEVHIQIHQIESQEAMIE 639 +S L E+ +++ ++ Q ++E Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +R +L +L + + + ++ + + + + ++ L + + Sbjct: 398 RLRRKLFELESELMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ--RLCER 544 + L + + ++ + + + EL L S + + K EE+ + R E Sbjct: 458 RIPFLSKYGSEPRKAVENVEEQM---RELLILKSSV-EASLSAKKKNLEELQEYSREQEE 513 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 LK++ +E + +R ++ L K L ++ K+ + Sbjct: 514 VLKNTLKEI----------GVDSEDELKVLRDLLERRANLRKTRDSLEKEIANFMKEKEE 563 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQI 631 + + + L + ++ ++ ++ Sbjct: 564 IESSRSNARIEELKREVEQIESELEKL 590 >gi|121595501|ref|YP_987397.1| ATPase [Acidovorax sp. JS42] gi|120607581|gb|ABM43321.1| ATPase AAA-2 domain protein [Acidovorax sp. JS42] Length = 867 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ V+ + + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553 I + I + K+ + S I ++ E + Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPESMDKLERRMIQLKIEREAMKKETDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++++ E D+ + ++ A + + + + I QI + KG+ K Sbjct: 436 QKRLQLIEEELGNVEREYADLEEVWKAEKASAQGSEQIRKDIDAIRTQIDDLKRKGDFNK 495 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ ++ + + EA Sbjct: 496 VAELQYGTLPELEKRLKEAQDSEA 519 >gi|54027550|ref|YP_121792.1| replicative DNA helicase [Nocardia farcinica IFM 10152] gi|54019058|dbj|BAD60428.1| putative replicative DNA helicase [Nocardia farcinica IFM 10152] Length = 885 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 15/169 (8%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 G+ E ++L ++ + + + + + Q ++ + Sbjct: 13 PPEPPGEDFGRQPPHDMAAEQSVLGGMLLSKDAIADVVEVIRPGDFYRPAHQAIYDTILD 72 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + P + L RG +L R L + T Y + +A Sbjct: 73 LYGRGEPADPVTVAAGLDRRG------ELKRIGGAPYLVTLTQTVPTAANAGYYAEIVA- 125 Query: 585 YKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + + R+ E +I Q + AE + ++EV + Sbjct: 126 ---EKAILRRLVEAGTRIVQYGYAGADGQDIAEVVDRAQAEVYEVTERR 171 >gi|330850830|ref|YP_004376580.1| DNA replication helicase [Fistulifera sp. JPCC DA0580] gi|328835650|dbj|BAK18946.1| DNA replication helicase [Fistulifera sp. JPCC DA0580] Length = 450 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 19/168 (11%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L E +L +L+ + +++ L+ + Q+++ + Sbjct: 14 NNSLPNNFLAEQIILSSLLTNQDVIEATTSLLSVEAFYFKNHQEIYRAIIFMNKNNFPID 73 Query: 534 PEEIHQRLCERGFGE-------------------LLKQLDRQVRDAGLWSATTEANIVDV 574 + L G E L++ V D L + + V Sbjct: 74 IITLINFLQTNGLLEKTGGSKVLIDLVSQRPNVTHLREYINLVNDKFLRRSIIKIGYEIV 133 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 Y ++ L + L + + + Q+ + E + + L Sbjct: 134 NSSYTTSIPLTQILNELEEKIVDFKNQLLLSQSLDNVELLNSIFANLK 181 >gi|329960379|ref|ZP_08298804.1| hypothetical protein HMPREF9446_00363 [Bacteroides fluxus YIT 12057] gi|328532817|gb|EGF59599.1| hypothetical protein HMPREF9446_00363 [Bacteroides fluxus YIT 12057] Length = 316 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 Y ++ N W PF +E PSF N + ++ F G+ + Sbjct: 20 YSPVKQQGVNL-----WYKSPFREENEPSFKVNTEREQWFDFGLGKGGNII 65 >gi|326936457|ref|XP_003214270.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like [Meleagris gallopavo] Length = 1902 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 97/297 (32%), Gaps = 6/297 (2%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + L+ D D + + + ++E E++ + +LE Sbjct: 1276 RLIRAAELNGELDDDDSGGEWRLKYERAVRE--IDFTKKRLQQELEDKLEVEQQGKRQLE 1333 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 L + ++ + + RL Q G + + + Sbjct: 1334 RRLADLQADGEESQRALQQLKKKCQRLAAELQDTKLHLEGQQGRNHDLEKKQRRFDGELS 1393 Query: 466 LMQSSLVKGKLSKKPSLREAALL-LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + +L ++ RE +L + + +L+++ ++A + L+ + S Sbjct: 1394 QAHEEAQRERLQREKLSREKDVLVAEVFSLKQLLEDKDADIAGLTQRAEALEAELQDI-S 1452 Query: 525 DFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + ++ +L + + ++LD Q + ++ ++Q Q Sbjct: 1453 CQESKDEASLAKVKXQLRDLEAKAKDQEEELDEQAGTIQMLEQIRQSCQKKLKQMEMQLE 1512 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Y+ + + R+K E+E +++ V + + ++ + + M++ Sbjct: 1513 EEYEDKQKVLREKRELESKLSAVNDQANQRDFETEKRLRRDLKRTKALLADAQIMLD 1569 Score = 43.3 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 21/187 (11%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + ++L + K ++ + + + + H A + + ++LA + Sbjct: 1620 SKAKAALEEQLSRLQREKNEVQSRLEEDQEDMNELMKKHKAAVAQASRDLAQMN------ 1673 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 L + L E +E+ ++L G L+ L++ + D L S EA I ++ Sbjct: 1674 -DLQAQLEEVSKE-----KQELQEKLQ--GLQSQLEFLEQSMVDKSLVSRQ-EAKIRELE 1724 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIH 629 + KR L+ + +E +++ + E E+ L L +V ++ Sbjct: 1725 TRLEFERTQVKRLESLATRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDVKEEMG 1784 Query: 630 QIESQEA 636 ++ +EA Sbjct: 1785 ELAKKEA 1791 >gi|302877963|ref|YP_003846527.1| hypothetical protein Galf_0724 [Gallionella capsiferriformans ES-2] gi|302580752|gb|ADL54763.1| hypothetical protein Galf_0724 [Gallionella capsiferriformans ES-2] Length = 115 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 8/73 (10%) Query: 22 GQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHV-KGDHLSFLSA 79 + ++ A C FHD+ S N G ++C +C GD L+ Sbjct: 43 SHGIQLKAKKGWA------MAKCTFHDDTHASLGINTESGGFFCHACGAKGGDVLAAHQL 96 Query: 80 LLGCSFIESVQRL 92 + GC F+ S + L Sbjct: 97 ITGCDFVTSAKVL 109 >gi|189184042|ref|YP_001937827.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi str. Ikeda] gi|189184741|ref|YP_001938526.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi str. Ikeda] gi|189180813|dbj|BAG40593.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi str. Ikeda] gi|189181512|dbj|BAG41292.1| putative conjugative transfer protein TraI [Orientia tsutsugamushi str. Ikeda] Length = 890 Score = 51.4 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 105/356 (29%), Gaps = 31/356 (8%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP-LPVVDPKIEKKEKIQTDLI 118 G +Y FS GD S + G SF ++ + L ++ G+ + + + Q Sbjct: 338 GKWYDFSAGEGGDLFSLVQRERGYSFFDAKEYLKSVVGMSNISQRYQRQPRTNDSQQ--- 394 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 + ++ + + + ++ +L +G Sbjct: 395 ---------YIQQPESIKIANVQNLYERSSKIHGYEIDKNPHAEVVNK-----YLENRGI 440 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + +K + L T R+++G++ L+ K S Sbjct: 441 TFDKSTASSDLKASILFDTQTRENYPAFTAFARNAKGEITGVQAVYLNPETGYKADVSIN 500 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 F K G+ + K N + I+ EG LSL QAG++ + + Sbjct: 501 RRSFGK------ISGSFITIAKRN-----VNDPNITIIAEGAETALSLQQAGIKGNIIAS 549 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 +I++ D D I + V D Sbjct: 550 AGISNLTNYSPF--PGEKIIIAADNDGKNSLTNNTVIKFAKILEMKEAITCIVKPQENGD 607 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 ++ ++ G + +I + + + ++ N E+ ++K N Sbjct: 608 FNNLLQTCGAQSIRDIIEPEITKLTKAVEATKLTQTENNSIEKQNDITNVKELYNK 663 >gi|255012232|ref|ZP_05284358.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313150073|ref|ZP_07812266.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313138841|gb|EFR56200.1| DNA primase [Bacteroides fragilis 3_1_12] Length = 321 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 21 IGQYVD-WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 I Y+ G W PF E SF N + ++ + G+ ++ Sbjct: 11 IADYLQSLGYSPVKQQSGSLWYKSPFRRETEASFKVNTDRNLWFDYGLGRGGNIITLAQE 70 Query: 80 LLGCSFI 86 L G ++ Sbjct: 71 LYGSDYV 77 >gi|331270937|ref|YP_004385648.1| putative DNA primase [Clostridium botulinum BKT015925] gi|329127329|gb|AEB77273.1| putative DNA primase [Clostridium botulinum BKT015925] Length = 357 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 46/281 (16%), Positives = 90/281 (32%), Gaps = 40/281 (14%) Query: 70 KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 GD + + L C E+++ G+ + + + + A F+ Sbjct: 73 SGDVFTLIMELKQCKLSEAMKICCNAIGIKYYNIKTNPQNNKPKRK--------AFGGFY 124 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 +S+K +K + ++ G ++ ++ ++ + I ++ Sbjct: 125 NSIKKQTNKLTSTIQLKAHNENILSNFINKGNLMFAKDNINYEIQTEFDIMYDFITDRIV 184 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN-SPETIL----FHK 244 + + G++I GR S E N S L F K Sbjct: 185 VPWRHHW-----------------TGEIIGIMGRYNSSAEYCTQHNISKWLPLKDLEFPK 227 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 + +Y + Y+ + R I + E VL GV+N S +++ Sbjct: 228 SQTIYGLYQNYKYILQQGR----------IYIGESEKFVLQAGSYGVRNTGSIGSHDISD 277 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 Q +L L IV C D D P + L+ + G Sbjct: 278 VQREILLSLGVDIVTCMDNDIPDSFNTEQCKKLLTTSSLLG 318 >gi|222111721|ref|YP_002553985.1| ATP-dependent chaperone clpb [Acidovorax ebreus TPSY] gi|221731165|gb|ACM33985.1| ATP-dependent chaperone ClpB [Acidovorax ebreus TPSY] Length = 867 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ V+ + + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLQVRYEAHHGVDITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553 I + I + K+ + S I ++ E + Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPESMDKLERRMIQLKIEREAMKKETDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++++ E D+ + ++ A + + + + I QI + KG+ K Sbjct: 436 QKRLQLIEEELGNVEREYADLEEVWKAEKASAQGSEQIRKDIDAIRTQIDDLKRKGDFNK 495 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ ++ + + EA Sbjct: 496 VAELQYGTLPELEKRLKEAQDSEA 519 >gi|166368925|ref|YP_001661198.1| ClpB protein [Microcystis aeruginosa NIES-843] gi|166091298|dbj|BAG06006.1| ClpB protein [Microcystis aeruginosa NIES-843] Length = 872 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/221 (14%), Positives = 83/221 (37%), Gaps = 16/221 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + +++ + ++ + + AL+ + Sbjct: 321 YRKYIEKDAALERRFQEVLVDEPNVVDTISILRGLKERYEVHHGVKIADNALVAAALLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLC-----ERGFG 547 + +++ I + KL + S E + + +RL + Sbjct: 381 RYISDRFLPDKAIDLVDEAAAKLKMEITSKPEELDEIDRKILQLEMERLSLQREYDPASR 440 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L++L++++ + + + +Q + + R + E++ +I Q Sbjct: 441 ERLEKLEKELANLKEEQSG-------LNAQWQGEKEIIDKVRGVKEAIEQVNLEIQQAER 493 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + + A L L ++ Q+ +E+Q A + GK R Sbjct: 494 DYDYNRAAELKFGKLTDLQRQMSALETQLADKQTTGKSLLR 534 >gi|326204916|ref|ZP_08194769.1| hypothetical protein Cpap_0175 [Clostridium papyrosolvens DSM 2782] gi|325984965|gb|EGD45808.1| hypothetical protein Cpap_0175 [Clostridium papyrosolvens DSM 2782] Length = 310 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 38/119 (31%), Gaps = 2/119 (1%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIES-VQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 ++ S G + F+ G F E+ V L G+ ++++E+ + L Sbjct: 51 NRWFDHSTEKGGLAIDFVQKFYGLPFQEAVVLLLGGEKGIEFKQTGKSVDEQERNRFVLP 110 Query: 119 RLIEVATDFFHHSLKNAR-DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 F + +K D+ + Y + + + + H ++ Sbjct: 111 EANSDMRRVFAYLIKQRFIDRNVLVYFAREKLLFEDAKYHNAVFVGLDENGVARHAHKR 169 >gi|145226771|gb|ABP48137.1| putative ATP-dependent Clp protease [Rhodococcus sp. DK17] Length = 877 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 74/218 (33%), Gaps = 16/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + R ++ + +++ + ++ +++ AL+ + ++H Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + E + Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A L E + + A ++ R R+ +E+ ++ ++ + E + Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498 Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644 ++ + E+ ++ E Q A +G + Sbjct: 499 NYDLNRAAELRYGEITELERRLEAAEEQLATRQGRNPL 536 >gi|295394874|ref|ZP_06805087.1| replicative DNA helicase DnaB [Brevibacterium mcbrellneri ATCC 49030] gi|294972207|gb|EFG48069.1| replicative DNA helicase DnaB [Brevibacterium mcbrellneri ATCC 49030] Length = 458 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 19/171 (11%), Positives = 51/171 (29%), Gaps = 18/171 (10%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L +++ + + + L + + ++ + + + Sbjct: 22 RTPPQDLDAETSVLGSMMLSKDAIADVVENLRGEDFYKPAHETIYDVILDLYASGEPADA 81 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL--- 591 + L + G L ++ L + + + LAL +R Sbjct: 82 VTVSNALSKSGD---LARIGGAAYLHTLIQSVPTSANAIFYAEIVRELALLRRLVTAGTR 138 Query: 592 ------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + +I QVT + +E L +L +I + Sbjct: 139 IVQMGYDAQGDTDDLINRAQSEIYQVTERRSSEDYVRLSEVLQPTVEEIER 189 >gi|212691631|ref|ZP_03299759.1| hypothetical protein BACDOR_01126 [Bacteroides dorei DSM 17855] gi|212665820|gb|EEB26392.1| hypothetical protein BACDOR_01126 [Bacteroides dorei DSM 17855] Length = 287 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + Y +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLVDFLAGFGYKPVIQRGNSV-----WYKSPFRTEKESSFKVDLHKELWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGKGGDIITLAKEI 71 >gi|118473168|ref|YP_891092.1| replicative DNA helicase [Mycobacterium smegmatis str. MC2 155] gi|118174455|gb|ABK75351.1| replicative DNA helicase [Mycobacterium smegmatis str. MC2 155] Length = 1024 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 3/122 (2%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S G+ + E A+L ++ + + + L + Q ++ + + Sbjct: 16 PPPSGDFGRQPPQDMAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQSVYDAILDLY 75 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L RG LL+++ L S A G AL + Sbjct: 76 GRGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGFYAGIVAEKALLR 132 Query: 587 RF 588 R Sbjct: 133 RL 134 >gi|124005694|ref|ZP_01690533.1| replicative DNA helicase [Microscilla marina ATCC 23134] gi|123988762|gb|EAY28368.1| replicative DNA helicase [Microscilla marina ATCC 23134] Length = 455 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 14/147 (9%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E LL TLIN P + E L + E Q ++ +F + + + +L Sbjct: 15 EQTLLGTLINEPVTMVEVIDILEVESFYRTEHQVIYEAIFELYAAGENIDLITLSHQLRA 74 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 +L+ L + E ++ Y + L + + RQ + Q+ Sbjct: 75 T------SKLEMIGSAKYLIFLSREVSLALNTVKYARIL----QEMQIRRQMIALGNQL- 123 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQ 630 +K + T + +L + Q+ + Sbjct: 124 ---SKSAQDITHDVFDLLSDTQHQLQK 147 >gi|295101820|emb|CBK99365.1| hypothetical protein FP2_19600 [Faecalibacterium prausnitzii L2-6] Length = 631 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 28/142 (19%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + Q R HD S +K Sbjct: 1 MYYTQEQIDHA-NQADLVSFLQSQGEQLTRAGQEYRWKR-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-------------VPLPVVDPK 106 +Y S G + F+ G SF E+V+ L G LP P Sbjct: 49 --WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDSPAPLSDFRLPPRSPT 106 Query: 107 IEKKEKIQTDLIRLIEVATDFF 128 E+ ++ T+ R+ E T FF Sbjct: 107 AEQVKRYLTEARRIDEDVTGFF 128 >gi|153813931|ref|ZP_01966599.1| hypothetical protein RUMTOR_00138 [Ruminococcus torques ATCC 27756] gi|317501428|ref|ZP_07959627.1| hypothetical protein HMPREF1026_01571 [Lachnospiraceae bacterium 8_1_57FAA] gi|145848327|gb|EDK25245.1| hypothetical protein RUMTOR_00138 [Ruminococcus torques ATCC 27756] gi|316897172|gb|EFV19244.1| hypothetical protein HMPREF1026_01571 [Lachnospiraceae bacterium 8_1_57FAA] Length = 174 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIR 119 ++CF C GD + F + L G S E+ +LA V ++ ++ + Sbjct: 6 RFHCFGCQADGDVIDFTARLFGLSGKEAALKLAEDFSVRYDAKGHDPPRRRPVKRKISE 64 >gi|198421268|ref|XP_002122655.1| PREDICTED: similar to zonadhesin, partial [Ciona intestinalis] Length = 2534 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 81/221 (36%), Gaps = 6/221 (2%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 +Y + Q ++ + + +++A+ + ++ K ++ Sbjct: 1928 KYELKEKHYQEYAQTVRELAPSVAQSAQQAEQSAQRLESTKQRLEQERAEAEKKFAQERL 1987 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRY-DNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L E + ++ +E + LQ L +++ + EEI + Sbjct: 1988 ELEEEGKRRIAMEMEDFEKQLAEETKAEKLKAEKTLQTLEKRKEKMLKDKREKMKEEIDR 2047 Query: 540 RLCERGFGELLKQ-LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 E ++ L++ RD ++ + + ++ ++ L ++ ++ +K +I Sbjct: 2048 AAAAGASEEEQRKILEQHERDVEKFTNKMDRERLRMQSQLEERLKKRRKEKM-QAKKGDI 2106 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E+Q + T K +K + + E QI ++ +IE Sbjct: 2107 EQQ-QETTRKEMDDKQKAELQQVQE--KQIQAMQETSKLIE 2144 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 36/325 (11%), Positives = 92/325 (28%), Gaps = 50/325 (15%) Query: 353 LSRGEDPDSFIRCYGKTA-FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + D + R ++L+ +D L + + ++ R L Sbjct: 1703 MKDKHDAEIRARTDLTDEQMQQLMAAHQQELDELDRGLEKQQNKQRAALRDRLAARRAKK 1762 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + +++++ + I R + K + + + + + + + Sbjct: 1763 TSLLRNKQETDAKKEEIEQRKEMSQVKAKSAKEAEKAAIIEGIQQNGAESSHKVIQRVLE 1822 Query: 472 VKGKLSKKPSLREAAL--------------------LLTLINH--------------PAI 497 + K E AL + ++N P + Sbjct: 1823 QRQNQEMKDLEAEFALKKKIILDECLQDIRDQFRKKMDAMLNRHESELEQLENEGLSPDL 1882 Query: 498 LQEQYQEL-----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 L+ + +EL +IR +K + + L E+ + E + Sbjct: 1883 LEARREELFGRQKDEIRSLEQNHKKECKEIEEHATAGWNLDFAKAKYELKEKHYQEYAQT 1942 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + E + + + L +++ E EK+ AQ + E E Sbjct: 1943 VRELAPSVAQSAQQAEQSAQRLEST----------KQRLEQERAEAEKKFAQERLELEEE 1992 Query: 613 KTAILISILHEVHIQIHQIESQEAM 637 + + + Q+ + E + Sbjct: 1993 GKRRIAMEMEDFEKQLAEETKAEKL 2017 >gi|296392719|ref|YP_003657603.1| replicative DNA helicase [Segniliparus rotundus DSM 44985] gi|296179866|gb|ADG96772.1| replicative DNA helicase [Segniliparus rotundus DSM 44985] Length = 485 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 20/204 (9%), Positives = 58/204 (28%), Gaps = 15/204 (7%) Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 + + ++ + G+ + ++ E ++L + Sbjct: 5 VGESRERVGLVRAEDAPREDHGLGSAVASRDRGPSSDGPYDAGRQPPQDAVAEQSVLGGM 64 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + + + Q ++ + F + + L +G L Sbjct: 65 LLSKDAIADVLEHVQGKDFYRPAHQLVFDAILELFGRGEPADAVLVAAELERKGH---LG 121 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VT 606 ++ L S+ A Y + +A + + R+ E +I Q Sbjct: 122 RIGGAPYLHTLISSVPTAA---NASYYAEIVA----EKAIMRRLVEAGTRIVQYGYGGAD 174 Query: 607 AKGEAEKTAILISILHEVHIQIHQ 630 + AE + + +V + Sbjct: 175 GQDAAEVVDRAQAEIFDVTQRKRA 198 >gi|16758964|ref|NP_445762.1| homer protein homolog 3 [Rattus norvegicus] gi|38604639|sp|Q9Z2X5|HOME3_RAT RecName: Full=Homer protein homolog 3; Short=Homer-3; AltName: Full=VASP/Ena-related gene up-regulated during seizure and LTP 3; Short=Vesl-3 gi|5103675|dbj|BAA35110.2| Vesl-3 [Rattus norvegicus] gi|149036003|gb|EDL90669.1| homer homolog 3 (Drosophila), isoform CRA_b [Rattus norvegicus] Length = 358 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 68/227 (29%), Gaps = 24/227 (10%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWK--------KNARHRDQKGPSQRLMQSSLVK 473 ++ Q++ + + + + S + L + Sbjct: 96 EQQLTQFAEKFQEVKEAARLAREKSQDGGELTSTALAMASHQVPPSPLVSTNGPEEKLFR 155 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + + P E L +++ ++ + Q++ + Q+L L + Sbjct: 156 SQSADAPGPTERERLKKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWR 213 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + QR + + +L+ QV + + EA V Q L R + + Sbjct: 214 QQLEVQRAEAEHLRQRVAELEAQVAAEPVRAGEKEATSQSVEQ-------LEARVQTKDQ 266 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH-------EVHIQIHQIES 633 + + ++ Q + + + E+ Q+ +ES Sbjct: 267 EIQTLKNQSTGPREAPDTAEREETQQQVQDLETRNAELEQQLRAMES 313 >gi|218440748|ref|YP_002379077.1| chromosome segregation ATPase [Cyanothece sp. PCC 7424] gi|218173476|gb|ACK72209.1| Chromosome segregation ATPase-like protein [Cyanothece sp. PCC 7424] Length = 785 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 80/252 (31%), Gaps = 24/252 (9%) Query: 403 ELEIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 E L+ + + KD + + +++ + + +K ++ G Sbjct: 334 ETIRELEQKLQNFKDTVAKDAEALREFEQKVETFKNTVAQDAEALREFEQKVESFKNTVG 393 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTL---INHPAILQEQYQELADI-RYDNNELQK 517 + +Q K + ++ +RE L + +L QEL D+ +N ++++ Sbjct: 394 QDAQALQELQQKIQDFQEIVVREGERFRALDFNLQDVQVLNLDRQELKDLITLNNQDVER 453 Query: 518 L---------WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD---RQVRDAGLWSA 565 + + + I R G E +++L + + Sbjct: 454 FPPQQEINAEIEQVVTRLDNLEQLEDNLISSRERLEGAREQIQELQDLRQDIITLNTQDI 513 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSR-------QKEEIEKQIAQVTAKGEAEKTAILI 618 ++ Q + L + + E+ +QI ++ A ++E L Sbjct: 514 ERLGTRQELEAKLQNIVTRIDNLEQLEQDLISSRERLEQASQQIQELRALQDSESLQKLD 573 Query: 619 SILHEVHIQIHQ 630 + + + Q Sbjct: 574 TEIQNAKAVLDQ 585 >gi|268318011|ref|YP_003291730.1| ATP-dependent chaperone ClpB [Rhodothermus marinus DSM 4252] gi|262335545|gb|ACY49342.1| ATP-dependent chaperone ClpB [Rhodothermus marinus DSM 4252] Length = 880 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 75/213 (35%), Gaps = 12/213 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + R ++ + +++ + ++ + + AL+ ++H Sbjct: 320 YRKYIEKDKALERRFQPVLVEEPSVEDTISILRGIKDRYEVHHGVRITDGALIAAAELSH 379 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + S E + + Q Sbjct: 380 RYITDRHLPD-KAIDLIDEAAARLRIEIDSMPEELDQLERQIRQLEIEREAVKRDNDQ-- 436 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ A E +R +QQ L +R R + + E++ + Q+ +GE + Sbjct: 437 EKLKAINEQLANLEEQRRALRARWQQEKELIQRIRSIKEEIEQLRIESEQLERQGEYGRV 496 Query: 615 AI--------LISILHEVHIQIHQIESQEAMIE 639 A L L E Q+ +++ A+++ Sbjct: 497 AEIRYGRIPELEKQLKEAQQQLEEVQKDGALLK 529 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/218 (10%), Positives = 64/218 (29%), Gaps = 19/218 (8%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y +RL+ + ++ + + + ++++K L++ Sbjct: 252 YRGEFEERLKAVVREAAASEGQVILFIDELHTVVGAGAAEGAVDAANILKPALARG---- 307 Query: 484 EAALLLT--------LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 E ++ I L+ ++Q + + + + + Sbjct: 308 EIRVIGATTLDEYRKYIEKDKALERRFQPVLVEEPSVEDTISILRGIKDRYEVHHGV--- 364 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 R+ + + R + D L + + + ++ + L RQ Sbjct: 365 ----RITDGALIAAAELSHRYITDRHLPDKAIDLIDEAAARLRIEIDSMPEELDQLERQI 420 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++E + V + EK + L + Q + + Sbjct: 421 RQLEIEREAVKRDNDQEKLKAINEQLANLEEQRRALRA 458 >gi|224535168|ref|ZP_03675707.1| hypothetical protein BACCELL_00029 [Bacteroides cellulosilyticus DSM 14838] gi|224523218|gb|EEF92323.1| hypothetical protein BACCELL_00029 [Bacteroides cellulosilyticus DSM 14838] Length = 976 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 54/450 (12%), Positives = 124/450 (27%), Gaps = 52/450 (11%) Query: 78 SALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH-------H 130 G SF E++ +LA+ V ++ + K + + + + FF Sbjct: 79 MYEEGISFSEAIFKLASRYNVT-NELNKSVNKPDIRKRPAKADEKEGSRFFELEKTFTAD 137 Query: 131 SLKNARDKRLHYYLDERGI----DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEA 186 LK + ++D ++ ++ + S + Sbjct: 138 QLKIMGPRVKQEHIDRLNWYVAKSISYVKNREVTTKYTTPTYPIFMRECIVQSSNDPEKV 197 Query: 187 GLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGK 246 ++R + + + + N+ E LF + Sbjct: 198 VKFYKIYEPLNPDKQWRFSYTPDGVKPKEFINGLE----ELKKLYREYNAKEEALFKQD- 252 Query: 247 NLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEY 305 K+ K + + G D L + G + + ++ Sbjct: 253 ------------PKNEDKPYKEKKLEEAFICSGERDSLCVASLGYSPLWFNSETYKVSPE 300 Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 +++ ++K ++ D D G+R A +L L ++ L+ +D R Sbjct: 301 EIKEIYKYVEKLYNIPDIDSTGIRKAT---ELALKYMDILTVWLPSWLTTYKD----WRG 353 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + F + D ++ + E + E K D +Y Sbjct: 354 KPRKDFRDFMELRQKNED--FRNLLKMAMPARFWEITQNEKTGKKQYEIDADCL---HYF 408 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + F E+S +Y + R S + + + + Sbjct: 409 LKLNG-----FHALRDENSANTQYVRVVGRI-----VSSIKGKDIRTFLRQFARERYLDR 458 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNEL 515 + ++N P + + L +I D Sbjct: 459 NIRNLILNSPRMSDGALENLDEITLDFTSY 488 >gi|260203198|ref|ZP_05770689.1| replicative DNA helicase [Mycobacterium tuberculosis K85] gi|289572634|ref|ZP_06452861.1| replicative DNA helicase [Mycobacterium tuberculosis K85] gi|289537065|gb|EFD41643.1| replicative DNA helicase [Mycobacterium tuberculosis K85] Length = 123 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 26/86 (30%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 P S G+ + E ++L ++ + + + L + Q ++ Sbjct: 8 APGMDSSPPSEDYGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYD 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGF 546 + + + + L RG Sbjct: 68 AILDLYGRGEPADAVTVAAELDRRGL 93 >gi|229025759|ref|ZP_04182159.1| DNA primase [Bacillus cereus AH1272] gi|228735542|gb|EEL86137.1| DNA primase [Bacillus cereus AH1272] Length = 176 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 17/188 (9%), Positives = 50/188 (26%), Gaps = 13/188 (6%) Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + ++K + + ++ + E ++ ++ + Sbjct: 1 METLLNQLHQYRKEQKVQQKQIKQVSKPSQIVQTKPKLTGFERAEREIIYHMLQSAEVAV 60 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + E + + L++ + + L + ++ + Sbjct: 61 RMEPHIE--DFHTEEHKGILYELYAYYEKGNEPSVGTFLSWLSDEKLKNIITDI------ 112 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 S N + Q L KR +K EI ++ Q+ E ++ Sbjct: 113 ----STDEFINPEYTEEVLQGHLETLKR-HQEKLEKMEIIFKVKQMEKTDPVEAAKYYVA 167 Query: 620 ILHEVHIQ 627 L + Sbjct: 168 YLQNQKAR 175 >gi|86604906|ref|YP_473669.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-3-3Ab] gi|86553448|gb|ABC98406.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-3-3Ab] Length = 880 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 85/215 (39%), Gaps = 12/215 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R ++ + + +++ + +L + ++AL+ + Sbjct: 321 YRKHIEKDAALERRFQPVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAAVLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554 + E++ I + KL + S K +EI +R+ + EL LK+ D Sbjct: 381 RYISERFLPDKAIDLVDEAAAKLKMEITS-----KPVELDEIDRRIMQLQMEELSLKKED 435 Query: 555 RQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L E ++ +Q +R + L +++ ++ QI Q K Sbjct: 436 DPASKERLGKIEQELANLMERQRELSARWQMEKEAIERLQNLKAERDAVKLQIEQAEQKY 495 Query: 610 EAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGK 643 + + A L L E+ QI + E+ A ++ G+ Sbjct: 496 DLNRAAELKYGKLMELERQIQEQEAHLAKLQANGE 530 >gi|332800519|ref|YP_004462018.1| replicative DNA helicase [Tepidanaerobacter sp. Re1] gi|332698254|gb|AEE92711.1| replicative DNA helicase [Tepidanaerobacter sp. Re1] Length = 446 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 61/182 (33%), Gaps = 20/182 (10%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ E ++L +++ + ++L + +K++ + + +++ Sbjct: 5 KIPPYNLEAEQSVLGSMLLSKDAITVAAEQLRVQDFYKESHKKIFEVIVRLYEDREPVDL 64 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALA------- 583 + + L E + + + IV+ + ++ + Sbjct: 65 ITVTEALRSAKILEQIGGATYLTALTEIVPTAANISYYCKIVEEKALIRRLINTTSEILS 124 Query: 584 -LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIESQEAMI 638 Y + + +E E++I ++ K + + E+ +I Q+ + E I Sbjct: 125 MAYDQQNEVEDLLDEAERRIFEIAQK----RRVENFHHIKEILFDTFERIEQLYNSEGGI 180 Query: 639 EG 640 G Sbjct: 181 TG 182 >gi|58616222|ref|YP_195351.1| hypothetical protein p1B110 [Azoarcus sp. EbN1] gi|56315683|emb|CAI10327.1| hypothetical protein p1B110 [Aromatoleum aromaticum EbN1] Length = 336 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 10/103 (9%) Query: 9 KDLLIHIPISN----LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-FYY 63 +++ +P+S+ ++G+ V+ R + HD + + KG F+ Sbjct: 3 EEVRKQVPLSSFLASILGEPVE-TRTGPRWSSCPHCGPS-EHDSRKTTLS---GKGEFFR 57 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK 106 CF+C GD + + CS E+ +LA A V +P + Sbjct: 58 CFACGSHGDVIEAAALYHRCSHKEAAAKLAGDARVVVPFRHSR 100 >gi|255281156|ref|ZP_05345711.1| toprim domain protein [Bryantella formatexigens DSM 14469] gi|255268113|gb|EET61318.1| toprim domain protein [Bryantella formatexigens DSM 14469] Length = 625 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 30/144 (20%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + GQ R HD S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQGQGEQLTRAGQEYRWKR-------HD----SLTIRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104 +Y S G + F+ G SF E+V+ L A+ + LP + Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPSPASFSDFRLPPRN 106 Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128 P T + R+ E + FF Sbjct: 107 PDNRIVRNYLTAVRRIDEDVSGFF 130 >gi|226362635|ref|YP_002780413.1| replicative DNA helicase [Rhodococcus opacus B4] gi|226241120|dbj|BAH51468.1| replicative DNA helicase [Rhodococcus opacus B4] Length = 717 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 15/178 (8%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + P + G+ + E ++L ++ + + + L + Sbjct: 7 RGHSEYPGPPDAEPGEEFGRQPPQDMAAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAH 66 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 Q ++ + + + P + L RG +L R L + T Sbjct: 67 QSVYDVILDLYSRGEPADPVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANA 120 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAKGEAEKTAILISILHEVHIQI 628 Y + +A + + R+ + +I Q + AE + + EV + Sbjct: 121 GYYAEIVA----EKAILRRLVDAGTRIVQYGYTGGEGQDVAEVVDRAQAEIFEVTERR 174 >gi|325280649|ref|YP_004253191.1| putative transposon-related/mobilization protein [Odoribacter splanchnicus DSM 20712] gi|324312458|gb|ADY33011.1| putative transposon-related/mobilization protein [Odoribacter splanchnicus DSM 20712] Length = 363 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 43/254 (16%), Positives = 83/254 (32%), Gaps = 13/254 (5%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95 P ++ TPSF + + + + G + + GC+ ++ RL Sbjct: 71 SPLREDNTPSFKVDYNVNLWCDYGTGEGGTLIDLVMKQHGCNAYGAICRLEQGNTASFSF 130 Query: 96 AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155 G LP D K + I+ I+ ++ + + Y+ E Sbjct: 131 HGKDLPERDTKRQAASPIEIRRIQPLQNPALIRYLQERGISPGTASPYVQEMYYRIGGKP 190 Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSSR 214 F L + DS + R KG + + I + ++ ++ F + L F IR + Sbjct: 191 YFALAFKNDSGGYELRNPRFKGSTSKDITHIRQQGEPRDTCFVFEGFLDFLSFLTIRQQK 250 Query: 215 GQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 + L+ + P H L N A ++IR++ + Sbjct: 251 SPDMPCTDWQDYVILNSTANTDKALYPLADYGHIHCMLDN-DEAGRKAVEAIRQEYKWRV 309 Query: 271 SSFIILVEGYMDVL 284 L G+ D+ Sbjct: 310 RDASHLYSGHNDLN 323 >gi|126734686|ref|ZP_01750432.1| hypothetical protein RCCS2_12454 [Roseobacter sp. CCS2] gi|126715241|gb|EBA12106.1| hypothetical protein RCCS2_12454 [Roseobacter sp. CCS2] Length = 883 Score = 51.0 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 25/213 (11%), Positives = 70/213 (32%), Gaps = 22/213 (10%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 ++ FQ + R + + + R + ++ LR ++ L Sbjct: 397 RRFFQPFARAVIEQRRDLMWSKANAPRVNQILRAVSHRPEGLFSNETTYLRLRTIIRRL- 455 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-------- 544 D+ + ++ L+ V+ + + +RL Sbjct: 456 ----------DNFDDVGLTDEVQAEIVEALWDLAVQLEDGRLADARERLRRAQERLSEAM 505 Query: 545 ---GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E + +L +++R+A A + G QA + + +L + + + + Sbjct: 506 RNGASDEEIAELMQELREATDDYLRMLAEEAEPNDGTDQADSGQQSEQLGMDELQALMDR 565 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 I ++ +G + L+ L+++ + + + Sbjct: 566 IQELMEEGRMAEAQELMEQLNQMMENLRVTQGE 598 Score = 41.4 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 9/119 (7%) Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + + L L ++++LD T E V + Sbjct: 425 NQILRAVSHRPEGLFSNETTYLR---LRTIIRRLDNF----DDVGLTDEVQAEIVEALWD 477 Query: 580 QALALYK-RFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHEVHIQIHQIESQEA 636 A+ L R + ++++++ G E+ A L+ L E ++ ++EA Sbjct: 478 LAVQLEDGRLADARERLRRAQERLSEAMRNGASDEEIAELMQELREATDDYLRMLAEEA 536 >gi|317473779|ref|ZP_07933060.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] gi|316910036|gb|EFV31709.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] Length = 287 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL--- 80 Y ++ W P +E SF N ++ F G+ ++ + L Sbjct: 20 YTPVKQQGK-----SLWYKSPLRNETDASFKVNTELNQWHDFGIGKGGNIIALAAELYHS 74 Query: 81 LGCSFIESVQRLAAI 95 +++ ++R+A Sbjct: 75 ENVAYL--LERIAER 87 >gi|224165828|ref|XP_002338860.1| predicted protein [Populus trichocarpa] gi|222873715|gb|EEF10846.1| predicted protein [Populus trichocarpa] Length = 320 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 ++ K + E + L +++ + +L E L + + + +K++ + Sbjct: 2 SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVLTEIGDALKEDDFSLDAHRKIYMTMR 61 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564 ++ + L ++G+ L +++L +++ G++ Sbjct: 62 EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622 + R+GY+++ + L R+ EI + G+ + L Sbjct: 122 KLILSAEEIARKGYEESEDIEVLLDLAERKILEIGSNRTTRGFVKVGDVQYIEAQYKRLE 181 Query: 623 EVHIQ 627 E+ + Sbjct: 182 ELRAR 186 >gi|149175309|ref|ZP_01853931.1| hypothetical protein PM8797T_20958 [Planctomyces maris DSM 8797] gi|148845918|gb|EDL60259.1| hypothetical protein PM8797T_20958 [Planctomyces maris DSM 8797] Length = 1247 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 82/247 (33%), Gaps = 13/247 (5%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDR-LQQLFQKYITEHSGYGRYWKKNARHRD 458 + + + I+ Q ++ + + + + F K + + Sbjct: 754 QWQQTRDLVSELDEQIQQQADIQNQTEKLARKTITKTFGKLKLQEQADLEKLAHRQEQQA 813 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINH--PAILQEQYQELADIRYDNNE 514 + + R + +L + S R+ + L + P ++++ + + Sbjct: 814 DQFKAFRNLLDTLNDQEQEIAHSERQRNQEAIDFLRKNSIPEVMKQTADRIKQNQVGQAL 873 Query: 515 LQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 ++ L + F Q E+ +L + L + ++ + E Sbjct: 874 QEQQQLQESMQKLKNIFENQPVNSTAELLNQLIKSEQE--LNLIKQKQEEILQKLKKAEN 931 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 D + + L K+ + L +Q +++E ++ +++ A+ ++ + Sbjct: 932 AP-DSEEKEAELQKLRKQEQELKQQMQQLELKLQRLSLNKAADSMQRSGRRTSQIDNALQ 990 Query: 630 QIESQEA 636 Q ++EA Sbjct: 991 QGNTEEA 997 >gi|91788074|ref|YP_549026.1| ATPase [Polaromonas sp. JS666] gi|91697299|gb|ABE44128.1| ATPase AAA-2 [Polaromonas sp. JS666] Length = 866 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 4/207 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ K ++ + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKILVDEPTVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553 I + I + K+ + S I ++ + Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++ + A + I D+ + +Q A + + + + I QI + T KG+ K Sbjct: 436 QKRFGLIEVEIAKLQKEISDLDEIWQAEKAQALGSKDVMEEIDRIRFQIEEFTRKGDFNK 495 Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIE 639 A L L E+ ++ + EA E Sbjct: 496 VAELQYGKLPELEKRLKAAQDTEAQKE 522 >gi|325268695|ref|ZP_08135324.1| hypothetical protein HMPREF9141_0533 [Prevotella multiformis DSM 16608] gi|324988939|gb|EGC20893.1| hypothetical protein HMPREF9141_0533 [Prevotella multiformis DSM 16608] Length = 310 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93 P+ ++ S + ++ +Y F G + + L GC +++ LA Sbjct: 40 PYREDHNASMKVDFARNLWYDFGLGKGGSIIDLVMLLQGCDAHKAMSLLA 89 >gi|260590823|ref|ZP_05856281.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] gi|260537309|gb|EEX19926.1| putative mobilizable transposon, excision protein [Prevotella veroralis F0319] Length = 307 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 22/50 (44%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLA 93 P+ ++ S + ++ +Y F G + + L GC +++ LA Sbjct: 40 PYREDHNASMKVDFARNLWYDFGLGKGGSIIDLVMLLQGCDAHKAMSLLA 89 >gi|126665190|ref|ZP_01736173.1| replicative DNA helicase [Marinobacter sp. ELB17] gi|126630560|gb|EBA01175.1| replicative DNA helicase [Marinobacter sp. ELB17] Length = 468 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 14/186 (7%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + + K+ E A+L L+ E + ++ + + + + Sbjct: 2 AKPNLKPANSDPETSRIKVPPHSLEAEQAVLGGLMLDNRRFDEISEMISAVDFYRQDHRL 61 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 ++ + E + + + L G ++ + L + + Sbjct: 62 IFGAVERLASENEPLDVVTLAEFLERAG------DIEHAGGLSYLAELAEKTPGAANIRA 115 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 Y + R R + RQ E +I+ ++ ++ QI + + Sbjct: 116 YADIV----RERSILRQLVEASGKISDSAFNPLGRNSSEILDEAERTVFQIAEAR----V 167 Query: 638 IEGFGK 643 EG G Sbjct: 168 KEGSGP 173 >gi|222530364|ref|YP_002574246.1| hypothetical protein Athe_2405 [Caldicellulosiruptor bescii DSM 6725] gi|222457211|gb|ACM61473.1| conserved hypothetical protein [Caldicellulosiruptor bescii DSM 6725] Length = 361 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 107/369 (28%), Gaps = 49/369 (13%) Query: 5 RDFIK----DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDE---KTPSFHCND 57 ++ I D+L + I +R CP+ DE + + N Sbjct: 2 KELIDITMQDVLDRVRI-------TVLKQRGNELN-----CLCPYCDEPHRREGHLYINI 49 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIES----VQRLA----AIAGVPLPVVDPKIEK 109 +K + C C +G+ L + L E+ VQ +A + + + +I+ Sbjct: 50 AKDTFICHKCGRQGNALQLYALLTNQDTKEAYRELVQEIASGSRRLHHIQYKLQHKEIQP 109 Query: 110 KEKIQTDLIRLIEVATDFFHHSLK-NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 + I E + LK D+ L RG+ AI++ + Sbjct: 110 R------YIAPPEARDKVYREFLKLLTLDETHKSDLLRRGLSETAIKIKGYKSLNVEKER 163 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 R + + + P+R+ +GQ++ R Sbjct: 164 RLLICRVMQEKGLNLAGIPGFYEHKTTGEWDFIPYQGYAIPVRNFKGQIVGLQVRMNEPA 223 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL-SLC 287 S S + ++ V + + EG + + Sbjct: 224 LSKYRWFSSSN------------SKDVGTPAEASLHAVGSMEEGIVYVTEGALKADVASY 271 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCFDGDDPGLRAAYKAID-LVLCHLIPG 345 +G + ++ + + L ++ P+ ++L FD D ++ + G Sbjct: 272 LSGQMFIGLPGVSSCHKQLIETLKQIQPKVVILAFDMDCEEKVEVRLNVEKVKKLLTENG 331 Query: 346 NRVNFVLLS 354 + Sbjct: 332 FEFKQITWD 340 >gi|331700353|ref|YP_004336592.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190] gi|326955042|gb|AEA28739.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190] Length = 469 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 20/180 (11%), Positives = 49/180 (27%), Gaps = 15/180 (8%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 + S + + E ++L ++ + + + L + Sbjct: 10 GRPRAVRTDEGAPGGDSPSPFDRQPPQDLTAEQSVLGGMLLSKDAIADVVEILRPDDFYR 69 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 Q ++ + + + + L RG +L R L + Sbjct: 70 PAHQTVYDCILDLYGRGEPADAVTVSAELQRRG------ELIRLGGAPYLHTLIATVPTA 123 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQ 627 Y + +A + + R+ E +I Q E + ++EV + Sbjct: 124 ANAAYYAEIVA----EKAILRRLVEAGTRIVQLGYHGADGSDVDEVVDRAQAAIYEVTER 179 >gi|322376307|ref|ZP_08050800.1| hypothetical protein HMPREF0851_00093 [Streptococcus sp. M334] gi|321282114|gb|EFX59121.1| hypothetical protein HMPREF0851_00093 [Streptococcus sp. M334] Length = 361 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 54/163 (33%), Gaps = 34/163 (20%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + ++ + ++ + + + I + + + Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIVRRMIQQGLIAQASWKTNE 143 >gi|886302|gb|AAB53118.1| helicase [Mycobacterium leprae] Length = 257 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 3/121 (2%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 16 PPSEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRSGDFYRPAHQNVYDAILDLYG 75 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L RG LL+++ L S A G AL +R Sbjct: 76 RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRR 132 Query: 588 F 588 Sbjct: 133 L 133 >gi|15828446|ref|NP_302709.1| replicative DNA helicase [Mycobacterium leprae TN] gi|221230923|ref|YP_002504339.1| replicative DNA helicase [Mycobacterium leprae Br4923] gi|13432150|sp|P46394|DNAB_MYCLE RecName: Full=Replicative DNA helicase; Contains: RecName: Full=Mle dnaB intein gi|2959407|emb|CAA17948.1| replicative DNA helicase DnaB [Mycobacterium leprae] gi|13093876|emb|CAC32212.1| replicative DNA helicase [Mycobacterium leprae] gi|219934030|emb|CAR72780.1| replicative DNA helicase [Mycobacterium leprae Br4923] Length = 604 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 3/121 (2%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E ++L ++ + + + L + Q ++ + + Sbjct: 16 PPSEDFGRQPPQDLAAEQSVLGGMLLSKDAIADVLERLRSGDFYRPAHQNVYDAILDLYG 75 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L RG LL+++ L S A G AL +R Sbjct: 76 RGEPADAVTVAAELDRRG---LLRRIGGAPYLHTLISTVPTAANAGYYAGIVAEKALLRR 132 Query: 588 F 588 Sbjct: 133 L 133 >gi|309811418|ref|ZP_07705205.1| replicative DNA helicase [Dermacoccus sp. Ellin185] gi|308434725|gb|EFP58570.1| replicative DNA helicase [Dermacoccus sp. Ellin185] Length = 463 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + SS+ GKL + E +++ ++ + + E+ I + Sbjct: 6 PYEAPPEFDGAGSSSMPPGKLPPQDLQAEQSVIGGMMLSKDAIADVIAEVKGIDFYRPAH 65 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 + ++ + + + + L +RG L ++ Q + ++ A Sbjct: 66 ETIFDAITDLYGRGEPADAITVADELTKRG---ELARIGGQAYLHQIIASVPTAA---NA 119 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 Y Q +A R + R+ + +I Q+ Sbjct: 120 GYYAQIVA----ERAVLRRLVDAGTRIVQM 145 >gi|283780440|ref|YP_003371195.1| replicative DNA helicase [Pirellula staleyi DSM 6068] gi|283438893|gb|ADB17335.1| replicative DNA helicase [Pirellula staleyi DSM 6068] Length = 485 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 76/203 (37%), Gaps = 12/203 (5%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKP--SLREAALLLTLINHPAILQEQYQELADIRYD 511 A++R + G ++RL + + + P E LL +++ P +L + + + Sbjct: 2 AKNRREDGAARRLFEQPAEQVGDRQPPFDRQAEIGLLGSIVLLPDVLDDVVMIVRSEDFY 61 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSA 565 ++ +KL+S + + K P + RL G E L ++ V +A + Sbjct: 62 DDAHRKLFSHMCALHEGNKKIDPTLLIDRLKTAGDFEAVGGTAYLSKIINSVPNAAHATY 121 Query: 566 TTEA--NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 E R Q + + + S++ + + Q Q + + L + Sbjct: 122 YAEIVRTKSTFRSLIQASTEILRDAYDESQEAKHLLSQAEQKIFSILDVRGDNTVQSLKD 181 Query: 624 VHIQIHQIESQEAMIEGFGKMSG 646 V + ++ EA + G SG Sbjct: 182 VLQK--SMDRLEARMSGTLDTSG 202 >gi|213031134|emb|CAR31471.1| hypothetical protein [Streptococcus pneumoniae] Length = 361 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 34/163 (20%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + ++ + ++ + + + + + + + Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIIQKMIQQGLMSQASWKTNE 143 >gi|60360228|dbj|BAD90358.1| mKIAA4047 protein [Mus musculus] Length = 1506 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 103 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 162 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 163 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 220 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 221 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 280 Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 ++ + A E I + + Q+ A + R S Q ++E+ Sbjct: 281 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 340 Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 341 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384 >gi|76363508|sp|P53564|CUX1_MOUSE RecName: Full=Homeobox protein cut-like 1; AltName: Full=CCAAT displacement protein; Short=CDP; AltName: Full=Homeobox protein cux-1 Length = 1515 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 150 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 207 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267 Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 ++ + A E I + + Q+ A + R S Q ++E+ Sbjct: 268 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 327 Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 328 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 371 >gi|308159338|gb|EFO61872.1| Protein 21.1 [Giardia lamblia P15] Length = 681 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%) Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 +N R + K + L S++ + +L+E L + IL+E + L+D+ Sbjct: 248 RNLRKQYNKVVRENLEMRSVMDELSATLENLKENN--AQLTSDRDILRETNKHLSDMD-- 303 Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564 ++L + + E E+ + E + LD+ + ++ + S Sbjct: 304 ----RRLKQ-VINHTGEGDVVDCVNELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615 + D + L ++ R+ E+E ++ + E E Sbjct: 359 SEASDLKKDRARLLNDVKDLRQKLYDKEREHRELEIKLETSNREAEQLVYERQEVEETLT 418 Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640 L + L + I+ A IEG Sbjct: 419 RLTNELQSAKTLLQAIKQGAASIEG 443 >gi|325115989|emb|CBZ51543.1| putative plectin [Neospora caninum Liverpool] Length = 2378 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 23/293 (7%) Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + + + + V + + A ++ + + ++D+ + Sbjct: 1353 HALQARLESVQAELASARESVRRAGEDAHRTAESLRLEVEARMQQECQRAVATLRDELAQ 1412 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + E RH K R + ++ + Sbjct: 1413 LQAEREAARAAHASEKAQLVEAQQQAENAFTLFRHDAAKRDGAREEEIRQLREMVKTAED 1472 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------FSDFVEQKY 531 + A H ++ QEL R + +L++ L + Sbjct: 1473 AQSAL-------HAEETKKLEQELDGAREETEKLRRETQELVGASEELRRQLEAARADQQ 1525 Query: 532 FLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 +RL G E R+V +A + + R Q A R Sbjct: 1526 HAAAAFEERLRRAVEGEKEAFSAERRRVEEAHAVALES-LRTELTRDLQGQTAAQRSRAA 1584 Query: 590 LLSRQKEEIEKQIAQVTAK-GEAEKT--AILISILHEVHIQIHQIESQEAMIE 639 L +Q +E E+Q+ + A+ +A K L + +++++EA I+ Sbjct: 1585 ELEQQLKEAERQLQRERAEKADAAKAWQEDLAQAKRRHEAREEEMKNKEAEID 1637 >gi|305681605|ref|ZP_07404411.1| replicative DNA helicase [Corynebacterium matruchotii ATCC 14266] gi|305658765|gb|EFM48266.1| replicative DNA helicase [Corynebacterium matruchotii ATCC 14266] Length = 500 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 3/108 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P ++ + + L + Q +++ + F K P + RL Sbjct: 70 AEQGVLGAMLLSPTLVVDIIETLVPDDFYRPAHQLIYNAIIDLFSNNKEIDPLIVAGRLD 129 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 L+++ L SA A A+ +R Sbjct: 130 R---DNNLERIGGSTYLHTLVSAVPTAANARYYAEIVAEKAVLRRLVA 174 >gi|294955720|ref|XP_002788646.1| hypothetical protein Pmar_PMAR010183 [Perkinsus marinus ATCC 50983] gi|239904187|gb|EER20442.1| hypothetical protein Pmar_PMAR010183 [Perkinsus marinus ATCC 50983] Length = 1850 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 28/250 (11%), Positives = 82/250 (32%), Gaps = 36/250 (14%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +++ ++ L + +G R ++ + Q+ + + + RE Sbjct: 301 VHDLQEHVEDLTARLREAEAGRERSLQELSEATLTLKDQQKGAEEGRARADEEAESLRRE 360 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLPEEIHQRL 541 + + +L++ + + EL + + + E+ L E++ Q + Sbjct: 361 LEAKE--LTYNNLLRQVEEMREHMEEQAKELVAMATEKAAASIKSEEEVAHLKEQLQQAI 418 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEK 600 + L++ + A + E+ + + + + LA L + +++ Sbjct: 419 GRSNLADGLEEELSDAQMALTEAQDRESALEEAAEKAKNELAQASSELNELREEVTTLQE 478 Query: 601 QIAQVTAK------------GEAEKTAILIS------------------ILHEVHIQIHQ 630 +A + +A+K +S + E Q+ + Sbjct: 479 TLAASRREVMEYKESLESLQADADKLKEELSEAEEQREAERLRADRSEHEVEETKRQLAE 538 Query: 631 IESQEAMIEG 640 +++ EA +G Sbjct: 539 LKAGEASKDG 548 >gi|298485641|ref|ZP_07003720.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159667|gb|EFI00709.1| Conserved domain protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 966 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 2/85 (2%) Query: 31 KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88 K +Y A P +K S + SKG + F+ GD + + + G + +E+ Sbjct: 35 KRVDGGKEYTAANPTRADKRAGSLKISISKGTWSDFATGDKGGDLIDLVRYIDGGTDVEA 94 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKI 113 +LA + GV K E + Sbjct: 95 CNKLADLLGVTADSAPTKPEPAKSK 119 >gi|282896326|ref|ZP_06304348.1| Chaperone protein clpB 2 [Raphidiopsis brookii D9] gi|281198822|gb|EFA73701.1| Chaperone protein clpB 2 [Raphidiopsis brookii D9] Length = 871 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 4/215 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + ++ + +++L+ Sbjct: 321 YRKYIEKDAALERRFQQVYVDQPDVPDTISILRGLKERYEVHHGVRISDSSLVAAATLSS 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + + + + + L Sbjct: 381 RYISDRFLPDKAIDLVDEAAARLKMEITSKPEELDEIDRKILQLEMEKLSLQKE-SDLAS 439 Query: 556 QVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + R L + R +Q + + + + ++I +I Q E+ Sbjct: 440 RERLERLEKELADLKEEQAVLRVQWQSEKDIITKIQSIKEDIDKINLEIQQAQRITNYER 499 Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + L L E+ Q+ IE++ A + GK R Sbjct: 500 ASELIYGKLPELQEQLENIETELANTQRTGKSLLR 534 >gi|254818589|ref|ZP_05223590.1| replicative DNA helicase DnaB [Mycobacterium intracellulare ATCC 13950] Length = 458 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 15/166 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E A+L ++ + + + L + Q ++ + + Sbjct: 15 SPSEDFGRQPPQDMAAEQAVLGGMLLSKDAIADVLERLRPGDFYRPAHQNVYDAILDLYG 74 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L LL+++ L S A GY + Sbjct: 75 RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + L R+ E ++ Q AE + ++EV + Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVADRR 170 >gi|266619985|ref|ZP_06112920.1| DNA primase [Clostridium hathewayi DSM 13479] gi|288868449|gb|EFD00748.1| DNA primase [Clostridium hathewayi DSM 13479] Length = 594 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 65/517 (12%), Positives = 142/517 (27%), Gaps = 57/517 (11%) Query: 17 ISNLIGQYVDWDRR--KTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 I ++ + + RR N++ D CPF ++ + N K + C C +G L Sbjct: 12 ILDV-AELLHLQRRRPGPNSIYTD----CPFCGDRRGKMNLNYVKNVWRCNYCGEQGGML 66 Query: 75 SFLSALLGCSFIESVQRLAAIAGVP--LPVVDPK-------------------------- 106 S + L + E+ + + + + P Sbjct: 67 SLYARLNHITNSEANREIREALRIENTVYSSSPAINARGRAADSDSGEPTPVALPENAMV 126 Query: 107 ------IEKKEKIQTDLIRLIEVATDFF-HHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 E + + + + + + F +L+ L D+RG+ I++ Sbjct: 127 QAGRRLEETPQSPRASIQEIHQTLSLLFGMLTLRTPHRLHLRS--DKRGLTDEQIDILGF 184 Query: 160 GYAPDSRY--SLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 P SL + + Q+G + + + L + + ++R + ++ P G + Sbjct: 185 KSTPPPSQCRSLTDRIIQQGCT-VQGVPGFYLDEDNRWTVKFNRRSSGILIPAVGIDGFI 243 Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277 + +K N P K L + + S + + + + Sbjct: 244 RGAQ---ILLDIPMKDKNDPPDKAGTKYIWLSSSNKNMGVTSGSPVHFIGNPCARTVYIT 300 Query: 278 EGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR-----IVLCFDGDDPGLRAAY 332 EG + ++ V+ A L L+ R IV D D Sbjct: 301 EGLLKADIAHMLMDRSFVAV-AGANNVGPLDPLFAALARNGTELIVEANDMDKFNNNMTS 359 Query: 333 KAI-DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 K + L G + + + + + + + Sbjct: 360 KGASKIYLMARRYGMDCRPLTWNPNYKGIDDWQLALRRKEKLVQENPKSSFKASYLFGKC 419 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 + K + Y R+ +L ++ + Sbjct: 420 SFEAIGSYIADWQTDQKKGISLQEYLGLAKAEYELYTRNEASELECLLNSQRHCWKFRIY 479 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + +QK M + +P E L+ Sbjct: 480 QLDFDGEQKTIPFAFMGIEALYKANYTQPPAVEYRLM 516 >gi|315497368|ref|YP_004086172.1| hypothetical protein Astex_0323 [Asticcacaulis excentricus CB 48] gi|315415380|gb|ADU12021.1| hypothetical protein Astex_0323 [Asticcacaulis excentricus CB 48] Length = 389 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 21/77 (27%), Gaps = 16/77 (20%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH---DEKTPS--FHCNDSKGFYYCFS 66 I + G V CP +K S F N K + C+ Sbjct: 13 KELASIEEVAG--VKLVGGGVKR-----RGPCPLCGQGQKKKSSYAFEVNVRKKTFNCYV 65 Query: 67 CHVKGDHLSFLSALLGC 83 C+ GD + L Sbjct: 66 CNAHGDVI----ELERL 78 >gi|154500933|ref|ZP_02038971.1| hypothetical protein BACCAP_04618 [Bacteroides capillosus ATCC 29799] gi|150270263|gb|EDM97598.1| hypothetical protein BACCAP_04618 [Bacteroides capillosus ATCC 29799] Length = 173 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYE 46 >gi|157786531|ref|YP_001491707.1| Putative DNA primase [Mycobacterium phage Bethlehem] gi|40769470|gb|AAR89776.1| gp55 [Mycobacterium phage Bethlehem] Length = 136 Score = 51.0 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 10/95 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M + I ++ L +V + C H + PS + Sbjct: 1 MEPSQTLIAKVIER-----LAPDWVPPEDTGRVWTP----CLCWAHADTRPSAAVSYKLN 51 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95 + C C KG +S L S +++ LA Sbjct: 52 AFACLGCGTKGSAISLLMKREEVSHHRALE-LAQE 85 >gi|332292441|ref|YP_004431050.1| replicative DNA helicase [Krokinobacter diaphorus 4H-3-7-5] gi|332170527|gb|AEE19782.1| replicative DNA helicase [Krokinobacter diaphorus 4H-3-7-5] Length = 518 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 24/194 (12%), Positives = 64/194 (32%), Gaps = 12/194 (6%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + SL KGK+ + E +L L+ + E L+ + ++ Sbjct: 5 KPKPAYNTSKGQVISLEKGKIPPQALDLEVVVLGALMIDKKGVDEVIDILSPEVFYKDQH 64 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSA 565 + ++ + F E + + ++L + G +L +++ Sbjct: 65 RHIFEAIRVLFEEGQPVDLLTVSEQLKKMGKLDVAGGDYYLIQLTQKVASSAHIEYHARI 124 Query: 566 TTEANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + I + Y + + E ++ +VT + +++ + Sbjct: 125 ILQKFIQRSLIKISNEIIEEAYDETTDVFDLLDTAETKLYEVTQGNVKRSSESAQNLVIQ 184 Query: 624 VHIQIHQIESQEAM 637 +I +I +QE + Sbjct: 185 AKKRIEEIANQEGL 198 >gi|271970513|ref|YP_003344709.1| replicative DNA helicase [Streptosporangium roseum DSM 43021] gi|270513688|gb|ACZ91966.1| replicative DNA helicase [Streptosporangium roseum DSM 43021] Length = 451 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 43/149 (28%), Gaps = 10/149 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E ++L ++ + + + L + Q ++ + + Sbjct: 15 RTPPNNIEAEQSVLGGMLLSKDAIADVVEILRSDDFYRPAHQIIYDIITDLYGRGDPADA 74 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L +RG + ++ L + A A R + + R+ Sbjct: 75 VTIFDELQKRG---EVARVGGGAYLHTLTAVVPTAAN-------AGYYARIVREQAILRR 124 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 E +I G+ E+ L+ Sbjct: 125 LIEAGTRIVSFGYGGQDEEVDDLVDRAQA 153 >gi|152993709|ref|YP_001359430.1| replicative DNA helicase DnaB, intein-containing [Sulfurovum sp. NBC37-1] gi|151425570|dbj|BAF73073.1| replicative DNA helicase DnaB, intein-containing [Sulfurovum sp. NBC37-1] Length = 822 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 7/157 (4%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L +I P I +E +L + Q ++ + E+K E + +L Sbjct: 10 ERAVLSAIIFDPEIYEEIAAKLHPHDFYLPFHQHVFLAMEELSREEKPIDEEFLRSKLVS 69 Query: 544 RGFGELLKQLDRQVRD-----AGLWSATTEANIVDVRQGYQQALALYKRFRLL--SRQKE 596 G + + L+ + A S + + L Sbjct: 70 MGKFDEVAMLELLSANPISNTAAYLSEIKAKSSKRALATLATEIKKVTIEDDLPAEEVMN 129 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +EK++ ++T E I + +I+++++ Sbjct: 130 LVEKKLYEITQNNTNEDFRESKEITLAMMDEINRLKA 166 >gi|294777886|ref|ZP_06743330.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|294448340|gb|EFG16896.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 288 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I + + + Y +R + W PF EK SF + K +Y F Sbjct: 3 IQEAKN-IRLIDFLSGLGYNPVIQRGNDV-----WYKSPFRTEKEASFKVDLHKEVWYDF 56 Query: 66 SCHVKGDHLSFLSAL 80 GD ++ + Sbjct: 57 GLGRGGDIITLAKEI 71 >gi|167771754|ref|ZP_02443807.1| hypothetical protein ANACOL_03126 [Anaerotruncus colihominis DSM 17241] gi|167666394|gb|EDS10524.1| hypothetical protein ANACOL_03126 [Anaerotruncus colihominis DSM 17241] Length = 173 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKEAAVQLAQDFGLSYE 46 >gi|26990598|ref|NP_746023.1| phage DNA helicase, putative [Pseudomonas putida KT2440] gi|24985581|gb|AAN69487.1|AE016583_11 phage DNA helicase, putative [Pseudomonas putida KT2440] Length = 465 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 14/150 (9%), Positives = 53/150 (35%), Gaps = 9/150 (6%) Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP---EEI 537 E ++ +L++ P++++ +++ + + + +L+S + + + P +I Sbjct: 10 EEAEFGVIGSLMHQPSLIETIGAKISPMHFHQQDAAELFSMILAARSAGRPADPVSLADI 69 Query: 538 HQRLCERGFGEL-LKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-----ALALYKRFRLL 591 L + ++ R + + + + L + R + Sbjct: 70 RPTLSNGEMTLVRAAEIMRNTVSVANANEYARIVVERSKARVVNDLGQTIINLASQARPI 129 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 ++ E+++ + ++ + L L Sbjct: 130 AQIIAEVQEAALSLNSEDDEPDVITLAEAL 159 >gi|154500255|ref|ZP_02038293.1| hypothetical protein BACCAP_03921 [Bacteroides capillosus ATCC 29799] gi|150270987|gb|EDM98261.1| hypothetical protein BACCAP_03921 [Bacteroides capillosus ATCC 29799] Length = 310 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 68 HVKGDHLSFLSALLGCSFIESVQRL---AAIAGVPLPVVDPKIEKKEKIQT--DLIRLIE 122 + GD ++FL SF+E+V+ L A PV P+ K+++ + L Sbjct: 63 GIGGDAITFLQRFYNKSFLEAVEYLLTWHGRARDSPPVSTPRQTKEKEEKVPFTLPPANV 122 Query: 123 VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 F + K ++ E G+ + + + Q+G + Sbjct: 123 DHRRVFAYLRKRGIAPQVIQGFVEAGLLYEDAQHHNCVFVGRDQSGAPVFANQRGTYDW 181 >gi|297587963|ref|ZP_06946607.1| replicative DNA helicase DnaB [Finegoldia magna ATCC 53516] gi|297574652|gb|EFH93372.1| replicative DNA helicase DnaB [Finegoldia magna ATCC 53516] Length = 445 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 16/134 (11%), Positives = 47/134 (35%), Gaps = 6/134 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +++ +I + + + + I + + + Q+++ + E+K + +L Sbjct: 14 AERSVIGAMIIDERAVDDAAEIVEPIDFYSTKYQEIYKAILQVIDEKKPVDYITLEDKLK 73 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E++ +D + + + + Y + R L R +++ Sbjct: 74 SNNMYEIIGGIDELISISEAVGSAVNV------KYYADIIKSKAIIRNLMRVSQDVIDMS 127 Query: 603 AQVTAKGEAEKTAI 616 + GE + A Sbjct: 128 IANNSVGEVLEYAE 141 >gi|206602881|gb|EDZ39362.1| DnaB helicase [Leptospirillum sp. Group II '5-way CG'] Length = 463 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 ++ K + E + L +++ + +L E L + + + +K++ + Sbjct: 2 SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVLTEIGDALKEDDFSLDAHRKIYMTMR 61 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564 ++ + L ++G+ L +++L +++ G++ Sbjct: 62 EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622 + R+GY+++ + L R+ EI + G+ + L Sbjct: 122 KLILSAEEIARKGYEESEDIEVLLDLAERKILEIGSNRTTRGFVKVGDVQYIEAQYKRLE 181 Query: 623 EVHIQ 627 E+ + Sbjct: 182 ELRAR 186 >gi|148687362|gb|EDL19309.1| cut-like 1 (Drosophila), isoform CRA_b [Mus musculus] Length = 1519 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 36/284 (12%), Positives = 100/284 (35%), Gaps = 20/284 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 94 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 153 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 154 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 211 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 212 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 271 Query: 552 QLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 ++ + A E I + + Q+ A + R S Q ++E+ Sbjct: 272 SQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 331 Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 332 QLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 375 >gi|17228074|ref|NP_484622.1| replicative DNA helicase [Nostoc sp. PCC 7120] gi|21759099|sp|Q8YZA1|DNAB_ANASP RecName: Full=Replicative DNA helicase; Contains: RecName: Full=Endonuclease PI-AspHIP; AltName: Full=Asp dnaB intein gi|17129923|dbj|BAB72536.1| replicative DNA helicase [Nostoc sp. PCC 7120] Length = 879 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 10/140 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +L + E A+L ++ P + + L + + + ++ + K Sbjct: 13 NRLPPQNIEAEEAILGGILLDPEAIGRVSEVLITEAFYISAHRDIYQAALRLHAQGKPTD 72 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + ELL ++ + + A L T A +D G + L R Sbjct: 73 LLSVTSWLTDN---ELLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122 Query: 594 QKEEIEKQIAQVTAKGEAEK 613 Q + +I + + E E Sbjct: 123 QLIKAGNEIVHLGYETEKEL 142 >gi|332995423|gb|AEF05478.1| replicative DNA helicase [Alteromonas sp. SN2] Length = 461 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 49/142 (34%), Gaps = 10/142 (7%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S +++ K K+ E ++L +++ P + + + D + N Q ++S + Sbjct: 3 SPPKGDNNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDTDFYNRSHQTIYSAI 62 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + L + +L+ A L Y Q + Sbjct: 63 TRLLNRSAPVDLITVSEELEKH------DELENAGGFAYLGELAKNTPSSANVVSYAQII 116 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ 604 + R ++R+ + +IA+ Sbjct: 117 S----ERAITRELIGVAHEIAE 134 >gi|256751484|ref|ZP_05492362.1| replicative DNA helicase [Thermoanaerobacter ethanolicus CCSD1] gi|256749703|gb|EEU62729.1| replicative DNA helicase [Thermoanaerobacter ethanolicus CCSD1] Length = 444 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E ++L +++ + + + + + +KL+ + F + Sbjct: 4 SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L +R E + +D + T + A + + R Sbjct: 64 LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622 + E +I +++ +G+ +T + I+ Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142 >gi|307265467|ref|ZP_07547023.1| replicative DNA helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|326391785|ref|ZP_08213304.1| replicative DNA helicase [Thermoanaerobacter ethanolicus JW 200] gi|306919581|gb|EFN49799.1| replicative DNA helicase [Thermoanaerobacter wiegelii Rt8.B1] gi|325992173|gb|EGD50646.1| replicative DNA helicase [Thermoanaerobacter ethanolicus JW 200] Length = 442 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E ++L +++ + + + + + +KL+ + F + Sbjct: 4 SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L +R E + +D + T + A + + R Sbjct: 64 LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622 + E +I +++ +G+ +T + I+ Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142 >gi|226228183|ref|YP_002762289.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] gi|226091374|dbj|BAH39819.1| ATP-dependent Lon protease [Gemmatimonas aurantiaca T-27] Length = 847 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 5/140 (3%) Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKY---FLPEEIHQRLCERGFGELLKQLDRQVRD 559 +E+ + + + L E E +HQ L L + Sbjct: 112 EEMMPLDLKDPAFEALHKEARERAAELGEKRGLPEEVVHQVLDSVEDAGRFADLVAGYIE 171 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + + V + ++ L +R L +E+I+ Q+ + GE ++ L Sbjct: 172 LTVPEKQGLLETLSVEERLRRVLVHVQRQIGLLEAQEDIKSQVQE--ELGERQREMFLRE 229 Query: 620 ILHEVHIQIHQIESQEAMIE 639 L + ++ +S + +IE Sbjct: 230 QLKAIQKELGDDDSSKEIIE 249 >gi|326796488|ref|YP_004314308.1| replicative DNA helicase [Marinomonas mediterranea MMB-1] gi|326547252|gb|ADZ92472.1| replicative DNA helicase [Marinomonas mediterranea MMB-1] Length = 457 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 3/130 (2%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S+ KL E +++ L+ P + + + E +++S + Sbjct: 4 DDSVASIKLPPYSIEAERSVVGGLMLDPEAWDRVSELVVADDFYRPEHNRIFSVIAKLAD 63 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + I +RL +RG L+ + + AT A + + AL +R Sbjct: 64 EVEPIDVVTIGERLDKRG---ELEDVGGMAYLIEMVEATPSAANIASYADIVRERALLRR 120 Query: 588 FRLLSRQKEE 597 + + + Sbjct: 121 LISTTNEITD 130 >gi|325279892|ref|YP_004252434.1| DNA primase [Odoribacter splanchnicus DSM 20712] gi|324311701|gb|ADY32254.1| DNA primase [Odoribacter splanchnicus DSM 20712] Length = 328 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 17/47 (36%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 W P +E+ PSF N + +Y F G+ L+ Sbjct: 24 KQQGNSLWYKSPLREEQEPSFKVNTDRNLWYDFGAGKGGNILALAQE 70 >gi|225020023|ref|ZP_03709215.1| hypothetical protein CORMATOL_00019 [Corynebacterium matruchotii ATCC 33806] gi|224947158|gb|EEG28367.1| hypothetical protein CORMATOL_00019 [Corynebacterium matruchotii ATCC 33806] Length = 473 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E +L ++ P ++ + + L + Q +++ + F K P Sbjct: 35 RQPPHDIDAEQGVLGAMLLSPTLVVDIIETLVPDDFYRPAHQLIYNAIIDLFSNNKEIDP 94 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + RL L+++ L SA A A+ +R Sbjct: 95 LIVAGRLDR---DNNLERIGGSTYLHTLVSAVPTAANARYYAEIVAEKAVLRRLVA 147 >gi|288817930|ref|YP_003432277.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6] gi|288787329|dbj|BAI69076.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6] gi|308751528|gb|ADO45011.1| replicative DNA helicase [Hydrogenobacter thermophilus TK-6] Length = 466 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 11/146 (7%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLP 534 L E A+L +I P + + + L + + + L+S L+ + + K + Sbjct: 7 EPPHDELAERAVLGAMILDPETIPQVLEYLREEDFYLEHHRLLFSLLYKLWEDKGKDWDD 66 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + + G + + A +++ EA + + +A+ L K L Sbjct: 67 IVLREYIKRYGLSDKID-------MAFVYALVEEAAKGALLE---EAINLVKEKSGLRNL 116 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620 + + + + + + + Sbjct: 117 LDLSLNALKGIKEEPDFNRLLEFMLH 142 >gi|126660356|ref|ZP_01731469.1| DnaB helicase [Cyanothece sp. CCY0110] gi|126618387|gb|EAZ89143.1| DnaB helicase [Cyanothece sp. CCY0110] Length = 445 Score = 50.7 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 15/185 (8%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + L + E ++L ++ P + + + ++++ + + + Sbjct: 3 INQTLPPQNIEAEESILGGILLDPEAMGRVVDLMNPEAFYVQSHKEIYQAALKLYGQGQP 62 Query: 532 FLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L + G +L + LDR V + T +R+ A Sbjct: 63 TDFLTVKSTLDDHHLLEQVGGLNKLTQLLDRTVSAVNIDRYATLVMDKYLRRQLIAAGHE 122 Query: 585 YKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM-- 637 + L +E EK+I +T K E + + + ++ ++ Q A+ Sbjct: 123 IVDLGFETTQALEIVLDESEKKIFALTQKRPQEGLIPISDTIIKTFNELEKLHEQTALPG 182 Query: 638 IE-GF 641 IE GF Sbjct: 183 IETGF 187 >gi|152997464|ref|YP_001342299.1| replicative DNA helicase [Marinomonas sp. MWYL1] gi|150838388|gb|ABR72364.1| replicative DNA helicase [Marinomonas sp. MWYL1] Length = 458 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +L S + KL E +++ L+ P ++ + + + E + +++ + Sbjct: 2 QLNDSEVASIKLPPYSIEAERSVVGGLMLDPQAWEKVSELVIADDFYRPEHKAIFTVIAR 61 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + I +RL +RG L+ + + AT A+ + + ++ Sbjct: 62 LADESEPIDVVTIGERLDKRGD---LESIGGMAYLIEVAEATPSASNIASYADIVRERSI 118 Query: 585 YKRF 588 +R Sbjct: 119 LRRL 122 >gi|167040998|ref|YP_001663983.1| replicative DNA helicase [Thermoanaerobacter sp. X514] gi|300913792|ref|ZP_07131109.1| replicative DNA helicase [Thermoanaerobacter sp. X561] gi|307725522|ref|YP_003905273.1| replicative DNA helicase [Thermoanaerobacter sp. X513] gi|166855238|gb|ABY93647.1| replicative DNA helicase [Thermoanaerobacter sp. X514] gi|300890477|gb|EFK85622.1| replicative DNA helicase [Thermoanaerobacter sp. X561] gi|307582583|gb|ADN55982.1| replicative DNA helicase [Thermoanaerobacter sp. X513] Length = 442 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E ++L +++ + + + + + +KL+ + F + Sbjct: 4 SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L +R E + +D + T + A + + R Sbjct: 64 LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622 + E +I +++ +G+ +T + I+ Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142 >gi|32451885|gb|AAH54565.1| LOC407638 protein [Danio rerio] Length = 910 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 46/316 (14%), Positives = 104/316 (32%), Gaps = 31/316 (9%) Query: 333 KAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 K ++ L + + D ++ K A E L + + +M + Sbjct: 195 KEMEKYKIQLEQLQEWRSKMQEQQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIE 254 Query: 393 RSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 + + E L+ +K++ + L + E G Sbjct: 255 MATLDKEMAEERAESLQQETESLKEKL----------EELTMDMEILKHEIEEKGSDGAA 304 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-AD 507 ++ H Q ++ +LV+ + +E L + L+ Q ++L + Sbjct: 305 SSYHVKQLEEQNARLKEALVRMRDLSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEE 364 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSA 565 ++ + + +L + + EE+ + L ER E +++L V D + Sbjct: 365 MKLAEDTIDELKEQVDAALGA------EEMVETLTERNLDLEEKVRELRETVSDLESINE 418 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA-----EKTAILISI 620 + + R+ L L ++ L + E +K++ K L + Sbjct: 419 MNDELQENARET---ELELREQLDLAGARVREAQKRVEAAQETLADYQQTINKYRELTTH 475 Query: 621 LHEVHIQIHQIESQEA 636 L EV+ ++ +S A Sbjct: 476 LQEVNRELTNQQSSSA 491 Score = 38.7 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 20/242 (8%) Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 +++ LR + + ++L+ L K + + K + + ++ + Sbjct: 158 APATPSKEEESLRAQ-LKDLEEKLETLRMKRSEDKAKLKEMEKYKIQLEQLQEWRSKMQE 216 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 K K+ L + + + + D + + E Sbjct: 217 QQNDLQKQLKEAKKEAREALEAKDRYMEEMADTADAIEMATLD--------KEMAEERAE 268 Query: 529 QKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + ++L E E+LK + G S+ + + ++AL + Sbjct: 269 SLQQETESLKEKLEELTMDMEILKHEIEEKGSDGAASSYHVKQLEEQNARLKEALVRMRD 328 Query: 588 FRLLSRQKE-EIEKQIAQVTAKGE-----AEKTAILISI----LHEVHIQIHQIESQEAM 637 +Q+ +++KQ+ + ++ E EK + + + E+ Q+ E M Sbjct: 329 LSSSEKQEHVKLQKQMEKKNSELETLRSQKEKLQEEMKLAEDTIDELKEQVDAALGAEEM 388 Query: 638 IE 639 +E Sbjct: 389 VE 390 >gi|58700258|ref|ZP_00374733.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] gi|58533225|gb|EAL57749.1| DNA primase [Wolbachia endosymbiont of Drosophila ananassae] Length = 132 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 16/147 (10%) Query: 90 QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGI 149 ++LA++ GV LP ++ K L +++A ++F ++ + YL +R I Sbjct: 2 EKLASVTGVELPKNLSITKEDNK----LFLALDLAANWFAQK-----NQGVVDYLKQRKI 52 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFP 209 I+ FK+GYAP S L+E+L G + +I+ GL+ D F +RLIFP Sbjct: 53 SPKIIDKFKIGYAPSS--GLKEYLNSSGIEDRILIDIGLVNKN-----FRDYFYDRLIFP 105 Query: 210 IRSSRGQVIAFGGRTLSKGESVKYLNS 236 I+S G+VI FGGR LS + KYLN Sbjct: 106 IQSIAGRVIGFGGRVLSSEQQPKYLNM 132 >gi|281426088|ref|ZP_06257001.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] gi|281399812|gb|EFB30643.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] Length = 303 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + I + + + D + + P EK SF N +Y F Sbjct: 3 IDQIK-KIKLQDFLA---TIDCKPVKQYGVNLMYLSPLRTEKHASFKVNTELNLWYDFGI 58 Query: 68 HVKGDHLS 75 G+ + Sbjct: 59 GRGGNIID 66 >gi|303242894|ref|ZP_07329355.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2] gi|302589569|gb|EFL59356.1| ATP-dependent chaperone ClpB [Acetivibrio cellulolyticus CD2] Length = 864 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 25/207 (12%), Positives = 77/207 (37%), Gaps = 6/207 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++ + + +++ + ++ + + A++ + Sbjct: 321 YRKYIEKDAALERRFQPILVDQPTVEDTISILRGLKERFEIHHGVRITDNAIIACAVLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + + + + S E + + + + + Sbjct: 381 RYISDRFLPDKAIDLMDEAAAMIRTEIDSMPTELDEISRRIMQLEIERQALRKEEDISSK 440 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + + D + + KR + L +Q E+I++QI + + +K Sbjct: 441 ERLGVLEKEIASLKDRADTMKAQWELEKQNIKREKDLKQQIEDIKRQIEEAERNYDLDKL 500 Query: 615 AIL----ISIL-HEVHIQIHQIESQEA 636 A+L + L ++ + +I+S EA Sbjct: 501 AVLKHGKMPDLEKQLESEKQRIKSSEA 527 >gi|167038647|ref|YP_001666225.1| replicative DNA helicase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117039|ref|YP_004187198.1| replicative DNA helicase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857481|gb|ABY95889.1| replicative DNA helicase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930130|gb|ADV80815.1| replicative DNA helicase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 442 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 52/149 (34%), Gaps = 10/149 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E ++L +++ + + + + + +KL+ + F + Sbjct: 4 SKIPPQNIEAEQSVLGSMLLSRDAIIDVSEIIKADDFYKESHKKLFDVMMEMFEKDIPVD 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L +R E + +D + T + A + + R Sbjct: 64 LVTVVDELRKRNMLEAVGGIDYIASLSSNVITTANVS----------YYAKLIKEKATLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILH 622 + E +I +++ +G+ +T + I+ Sbjct: 114 RLIEASSEIMELSYEGDDVETVLDIAEQK 142 >gi|269129125|ref|YP_003302495.1| replicative DNA helicase [Thermomonospora curvata DSM 43183] gi|268314083|gb|ACZ00458.1| replicative DNA helicase [Thermomonospora curvata DSM 43183] Length = 939 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 18/149 (12%), Positives = 45/149 (30%), Gaps = 10/149 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E ++L ++ + E + L + Q L+ + + + Sbjct: 13 RTPPHDLAAEQSVLGGMLLSANAIAEVVEILRPSDFYRPAHQILFDTILELYGRGEPADA 72 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L RG +++R L + Y + + R R + R+ Sbjct: 73 VTVVAELTRRG------EINRVGGAPYLHTLMATVPTAANAAYYAKIV----RERAVLRK 122 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 E+ +I Q+ + ++ Sbjct: 123 LVEVGTRIVQLGYSSDGADADEILDRAQA 151 >gi|157875983|ref|XP_001686356.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129430|emb|CAJ07973.1| hypothetical protein LMJF_34_2530 [Leishmania major strain Friedlin] Length = 4395 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 23/289 (7%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D R +G + + ++ E L+ +KD K Sbjct: 3976 DEACRLFGDADAVSAEGVAKLEAFAEVLAAARDTEKAAMEQLEAKESELEELRTALKDAK 4035 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + D ++QL ++ + G K+ R ++ + Sbjct: 4036 VWEEMRENLEDEVKQLQKEKEITETELGALQKEMNDLRYDLRAAEDRAAEKARE------ 4089 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E L ++ L ++ ++ ++ L Q + +E+ Q Sbjct: 4090 ---VERMTLDL----DSLNNRIQDLLEELEEKTDQYNQVIKDLDDFANNQSHETEKELLQ 4142 Query: 540 RLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSR 593 RL E+ EL + + + + I +R Q L+ L + Sbjct: 4143 RLAACEQELFELQEARRGENDEHEKQVGVLQDQINRLRNQTDQDNTLHNGLQDELARLRK 4202 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 + E + +A+ EA + +++ E Q+ ++E + +EG G Sbjct: 4203 LLLDAEAALRDKSAENEA-LKDDMENMIDEHEAQMREMEQE---LEGKG 4247 >gi|317152938|ref|YP_004120986.1| replicative DNA helicase [Desulfovibrio aespoeensis Aspo-2] gi|316943189|gb|ADU62240.1| replicative DNA helicase [Desulfovibrio aespoeensis Aspo-2] Length = 481 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 49/187 (26%), Gaps = 14/187 (7%) Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 + + A D SS + KL + E A++ + + E + Sbjct: 8 KQQRPRAGQYDSHSEEALERASSDLLRKLPPQNLEAEQAVIGGVFQSNTMFHELVDIIDA 67 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQV 557 + + + ++ + QK + +L G EL + Sbjct: 68 DDFYSPAHRTIFQAFIELYNRQKPIDLVTVKDQLETSGTLETIGGPVYLFELADSVFSAA 127 Query: 558 RDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEK 613 + I+ + + + E EKQ IAQ Sbjct: 128 NAMHHAKIVRDKAILRRLIDASSTIITNCYEAGDVDELLGESEKQIFNIAQSKGNANQID 187 Query: 614 TAILISI 620 + L+ Sbjct: 188 SKRLLDR 194 >gi|242279496|ref|YP_002991625.1| replicative DNA helicase [Desulfovibrio salexigens DSM 2638] gi|242122390|gb|ACS80086.1| replicative DNA helicase [Desulfovibrio salexigens DSM 2638] Length = 475 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 22/205 (10%), Positives = 57/205 (27%), Gaps = 11/205 (5%) Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 + K D SS + K+ E A+L + I + + Sbjct: 2 QKKQLKRKLGSDYNSGGASNDASSDLLRKVPPHNLEAEQAVLGGVFLSNTIFNDLVDIVK 61 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQ 556 + + Q+++ + + + L + EL + Sbjct: 62 SDDFYSPAHQEIFRAFEDLYGRNAPIDLITVSEYLTAKDKIDSVGGPVYLAELANSVVSS 121 Query: 557 VRDAGLWSATTEANIVD-VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 E +I + + + + + E+ I +T + Sbjct: 122 ANALHHAEIVAEKSIQRSLIDTAANIINESFEAQDVKELLDHSEQAIFDITDNKKNTTIK 181 Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640 +++ EV + +Q++++ G Sbjct: 182 GSKALIQEVFQDLENRVAQKSLVTG 206 >gi|192824052|ref|YP_001994514.1| gp56 [Mycobacterium phage KBG] gi|190610282|gb|ACE79804.1| gp56 [Mycobacterium phage KBG] Length = 136 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 1/55 (1%) Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAI 95 C H + PS + + C C KG +S L S +++ LA Sbjct: 32 CLCWAHADTRPSAAVSYKLNAFACLGCGTKGSAISLLMKREEVSHHRALE-LAQE 85 >gi|309776771|ref|ZP_07671745.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53] gi|308915519|gb|EFP61285.1| replicative DNA helicase [Erysipelotrichaceae bacterium 3_1_53] Length = 448 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 54/163 (33%), Gaps = 14/163 (8%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++L ++ +P++ Y + L + + Q+++S + K Sbjct: 2 SRELPHSTEAEQSILGAMMIYPSVTSVVYDQGLDARDFYLDIHQRIFSAMMDITDSGKPV 61 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + RL + ++QL V A ++ I Y + R Sbjct: 62 DVTTLIARLQD------IEQL-NLVGGADYIIKLSDTAISSANSVY---YIEMIKSRAHL 111 Query: 593 RQKEEIEKQIAQV--TAKGEAEKTA-ILISILHEVHIQIHQIE 632 R+ E +QIA+ + ++ + V + Sbjct: 112 RRLIEAAEQIAEDGFDTANDLDEIMDKAERDILNVTRSRRATD 154 >gi|295103822|emb|CBL01366.1| CHC2 zinc finger. [Faecalibacterium prausnitzii SL3/3] Length = 138 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI--QTDLI 118 ++CF+C GD + F+ L S ++V++L G+ L ++ + + L+ Sbjct: 6 RFHCFACQADGDVIDFVGRLFQLSPYKAVEKLKEDFGMALADGKVRLAPRRPPTVRQQLL 65 Query: 119 RLIEVATDF 127 + Sbjct: 66 DYYRCLQRW 74 >gi|21230001|ref|NP_635918.1| hypothetical protein XCC0526 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766877|ref|YP_241639.1| hypothetical protein XC_0538 [Xanthomonas campestris pv. campestris str. 8004] gi|21111518|gb|AAM39842.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572209|gb|AAY47619.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 903 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 41/337 (12%), Positives = 99/337 (29%), Gaps = 29/337 (8%) Query: 316 RIVLCFDGDDPGLRA---AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFE 372 RIVL DGD G R+ A L L S + ++ Sbjct: 281 RIVLRRDGDLAGERSGPLAQIHDVFRNFALANDKDGRGALRSDTK---IQVKLNKDGQAM 337 Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI----NHIKDQKLRYYYSQAI 428 + + + + + + S + + I + Y + Sbjct: 338 AVAWDKRSGLTTIEEHTGSDWSPVPEQIDDDYVRNRFPVTVLSQKQIYALAEQRGYLLEL 397 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 DR Q + + R+ R + +++L + L + E L Sbjct: 398 LDR-----QPQVDKAQWQRRFDAMRQRFLGLRAQARQLAPDLSQRPALEAELRDTERKLK 452 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++H A + YQ L W ++ +R+ GF + Sbjct: 453 ALELSHHASSLQAYQRARRQLSAQQNLLAQWQSDLESMR--PVVEDSDLFRRIEFEGFDQ 510 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----------LALYKRFRLLSRQKEEI 598 + + + +R Q A + +++ + + Sbjct: 511 ATGDEAEFIGLVEQVESELRGHYEQIRTAVSQIEATLATTPARFAALRLQVAITQAQADY 570 Query: 599 EKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIES 633 + + ++ ++G ++ A L++ E+ ++ ++++ Sbjct: 571 QALLERLKSQGVESPDQYAALVARRDELQKELKRLDA 607 >gi|71897355|ref|NP_001026538.1| dynactin subunit 1 [Gallus gallus] gi|14916981|sp|P35458|DCTN1_CHICK RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa dynein-associated polypeptide; AltName: Full=DAP-150; Short=DP-150; AltName: Full=p150-glued gi|6065857|emb|CAA44617.2| dynactin [Gallus gallus] Length = 1224 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 18/301 (5%) Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +D Y + + + +D E D E +L + Sbjct: 274 KEAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLE 333 Query: 414 HIKDQKLRY--------YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQ 464 +K + Y + + ++ +L + + + + + + Sbjct: 334 ILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNT 393 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSF 521 L + KL ++ E + A L +E + L + D E +++L Sbjct: 394 ELESLRQQREKLQEEVKQAEKTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRET 453 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + R E E L +VR+A + + D +Q ++ Sbjct: 454 VGDLEAMNEMNDELQENARETELELREQLDLAAARVREAEKRVEAAQETVADYQQTIKKY 513 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQE 635 L + ++R+ ++ A+ + E K A + + +++ Q+E Q+ Sbjct: 514 RELTAHLQDVNRELMSQQEASAEKQQQPPPEIFDFKIKFAETKAHAKAIEMELRQMEVQQ 573 Query: 636 A 636 A Sbjct: 574 A 574 Score = 37.9 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 74/239 (30%), Gaps = 28/239 (11%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 +++ LR + + ++L+ L K + + K + + ++ + + Sbjct: 209 EEENLRSQ-VRDLEEKLETLKIKRNEDKAKLKELEKYKIQLEQVQEWKSKMQEQQADLQR 267 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQ 529 K+ L + + + + D + L + + VE Sbjct: 268 RLKEAKKEAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEY 327 Query: 530 KYFLPEEIHQRLCERGFG---------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 E + + E+G +L +Q R + + + + +Q Sbjct: 328 LTMDLEILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQ 387 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 L +Q+E++++++ Q + E+ Q+ E M+E Sbjct: 388 MEKKNTELESLRQQREKLQEEVKQAEKTVD------------ELKEQVDAALGAEEMVE 434 >gi|262382294|ref|ZP_06075431.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295172|gb|EEY83103.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 326 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 15/255 (5%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95 P ++ TPSF + + + + G + + GC+ ++ RL Sbjct: 34 SPLREDNTPSFKVDYNANLWCDYGTGEGGTLIDLVMKQNGCNAYGAICRLEQGDITSFSF 93 Query: 96 AGVPLPVVDPKIEKKEK-IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 G LP D K + + L A + + Y+ E Sbjct: 94 HGKDLPERDTKRQAASPIEIRRIQPLHNPALMRYLQE-RGISPGTAAPYVQEMYYRIGGK 152 Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSS 213 F L + DS + R KG + + I + ++ ++ F + L F IR Sbjct: 153 PYFALAFKNDSGGYELRNPRFKGSTSKDITHIRQKGEPRDTCFVFEGFMDFLSFLTIRQQ 212 Query: 214 RGQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269 + + L+ +V P H L N A ++IR++ + Sbjct: 213 KSPGMPCTDWQDYVILNSTANVDKALYPLAGYGHIHCMLDN-DEAGRKAVEAIRQEYKWR 271 Query: 270 SSSFIILVEGYMDVL 284 L G+ D+ Sbjct: 272 VRDASHLYSGHNDLN 286 >gi|307127279|ref|YP_003879310.1| PcfD [Streptococcus pneumoniae 670-6B] gi|306484341|gb|ADM91210.1| PcfD [Streptococcus pneumoniae 670-6B] Length = 361 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++ + + Sbjct: 47 FKWFSRDIQGDVIDFVQLVKGISFKEALAFLSK------EPFQKEAVQENRERPFYY 97 >gi|224089235|ref|XP_002191550.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 987 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 91/299 (30%), Gaps = 13/299 (4%) Query: 340 CHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 + +P + E + + K++ + Sbjct: 625 QQWHVAHTQLLCAPEDHPEPRETLEYKAALELEMWKEMQEDIFENQLKKKEMVHMQALAE 684 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 E + E ++ + K + ++ L+ L ++ S + + Sbjct: 685 EWKKREKERESLVK--KKVAEYNVLEEKLQKTLRDLDKRERQLFSAESEVQRVKKELQAD 742 Query: 460 KGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + +++Q S+ + + L E + + L L++ +L + + LQK Sbjct: 743 HERNLQVLQDSMRRVREECAHQLELERSKIKQLEEDKHYLRQ---QLYEAENKHKTLQKE 799 Query: 519 WSFLFSDFVEQKYFLPEEIHQ--RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + L + L+ + + ++Q Sbjct: 800 FQQYKEQQSSKPEIQLQSEINLLTLEKVELERKLESATKSKLHYKQQWTRALKELARLKQ 859 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q+ + L RQ++E++ + A E E L ++ ++++++ QE Sbjct: 860 QEQENAMAH-----LKRQQQELKHMRLRYLAAEEKELGKTDRQELEDIRNELNRLKQQE 913 >gi|322798732|gb|EFZ20330.1| hypothetical protein SINV_15114 [Solenopsis invicta] Length = 501 Score = 50.7 bits (119), Expect = 8e-04, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 Q++ S +E+ + + L+++L V Sbjct: 298 TPLQQRIKQIASSHGLEEPNQEVAALISHAVQERLKNLVEKLA--VITEHRIDLIKVDPR 355 Query: 572 VDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +V Q + L + L R+K E+ + A+ AK E + A L + E+ Sbjct: 356 YEVTQDVRGQLKFLEDLDRLERRKHEEQERELLLRAAKSRAKTEDPEQAKLKAKAKEMQR 415 Query: 627 -QIHQIESQEA 636 ++ ++ +EA Sbjct: 416 IEMEELRKKEA 426 >gi|328781544|ref|XP_001121819.2| PREDICTED: myosin-XVIIIa [Apis mellifera] Length = 2049 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 92/275 (33%), Gaps = 15/275 (5%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 +++ ++ ++ ++ + + + K + ++ + + + Sbjct: 1459 YKQRYEHAVRELEFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVVGQWKR 1518 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---SLVKGKLSKKPSLREAAL 487 R+Q+L + +N ++ Q+ L + K ++ RE + Sbjct: 1519 RVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEI 1578 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYFLPEEIHQRLCE 543 + I Q +I L+ L L E++ ++ L + Sbjct: 1579 --AIAEKFTIEQNLSDARLEIELKEERLRTLSQELEELTFGGKTEEEVAQLKKAKHELEK 1636 Query: 544 --RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + E L L QV+ E +I R+ ++ + +R L + K+ Sbjct: 1637 RVKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEIRKEM--QQRDEELEDVRGNALKK 1694 Query: 602 IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQ 634 + + ++ E E L+ HE+ ++ IE Q Sbjct: 1695 VKALESQLENEHEERTILLREKHELERRLVAIEEQ 1729 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 31/251 (12%), Positives = 91/251 (36%), Gaps = 31/251 (12%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + + +++Q R + + + Q + + ++ AR ++ + Sbjct: 1526 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 1585 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----F 521 ++ +L +L L+E L + QEL ++ + +++ Sbjct: 1586 IEQNLSDARLE--IELKEERL-----------RTLSQELEELTFGGKTEEEVAQLKKAKH 1632 Query: 522 LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575 V+ + +++ ++ E+ L +++Q ++ + + DVR Sbjct: 1633 ELEKRVKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEIRKEMQQRDEELEDVRGNAL 1692 Query: 576 ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628 Q ++ +L R+K E+E+++ + + AE+ A + + ++ Sbjct: 1693 KKVKALESQLENEHEERTILLREKHELERRLVAIEEQDRAERAAEAETMHRLKRDLKRTK 1752 Query: 629 HQIESQEAMIE 639 + + M+E Sbjct: 1753 ALLRDAQTMLE 1763 >gi|166365309|ref|YP_001657582.1| replicative DNA helicase [Microcystis aeruginosa NIES-843] gi|166087682|dbj|BAG02390.1| replicative DNA helicase [Microcystis aeruginosa NIES-843] Length = 585 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 12/173 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L + E ++L ++ P L L + Q ++ + + K Sbjct: 5 QSLPPQNIEAEESILGGILLDPKALGRISDFLIPEAFYVKTHQDIYRAALALQGKGKPTD 64 Query: 534 PEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALA 583 + L + E LL+ ++R V A + +R+ + Sbjct: 65 LMTVSSWLQDNYLLEEIGGMPRLLQLIERTVSAANIDRYAELVMDKYMRRQLISTGGEII 124 Query: 584 LYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R L + +E E++I ++T K E L L E +I +++ Sbjct: 125 ELARDTTLELENVFDESEQKIFRLTQKRPQEGLIFLGDTLIETFNEIEKMQET 177 >gi|330959765|gb|EGH60025.1| putative DNA primase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 462 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 59/370 (15%), Positives = 105/370 (28%), Gaps = 29/370 (7%) Query: 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT----DLIRLIEVATDFFHHSLKNAR 136 G S + V+ L AGV P + E K+K + A L Sbjct: 82 NGMSNGDIVKALCESAGVEPP-DNRDNEAKQKARAANGGRPPLTTGQAIILVTQQLAQRN 140 Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSA 196 L + RG + + +LG ++ L Q E+ + D +N + Sbjct: 141 KGILEEFQQSRGYTNEVMASLRLGVFTNNDEVLSLLQAQGITREQARSIGIVSFDDENPS 200 Query: 197 TSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALN 256 + + R+I G+ + GR P + Y F Sbjct: 201 SVWSGMEGRVIGYWPHPDGEARIW-GRI------------PSGQGEARTNPKYRFS---P 244 Query: 257 YLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLSP 315 K I ++ + ++ VEG +D +L V + ++ Q L + Sbjct: 245 KSSKDIPYLFKQRQKTILVCVEGTLDAWALQLIKV-WGCAIGQASINSAQAAYLASQGIT 303 Query: 316 RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLI 375 DGD G A +I G ++ + L RG D +R G+ K + Sbjct: 304 EAAHMVDGDHAGYEGALSSIREAE---AVGITMSIIALGRGMDDADAMRTAGREEALKSL 360 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + S R + ++ + R + L Sbjct: 361 INSRMNAGEYMARYCASLLDQPL-PDLRRIAKIRAIAYGLTSASKRKWL--DFSQSLGIA 417 Query: 436 FQKYITEHSG 445 + Sbjct: 418 ADEESDALRA 427 >gi|327438189|dbj|BAK14554.1| replicative DNA helicase [Solibacillus silvestris StLB046] Length = 450 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 61/178 (34%), Gaps = 12/178 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ S E +++ + P L + + + + QK++ + + + K Sbjct: 8 RVPPHNSEAEQSVIGAVFLEPQALITASEIVIADDFYHIAHQKIFQTMLNLSDQGKAIDL 67 Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + L + EL + A E I+ +A Sbjct: 68 VTVTEELSAKKELEDIGGLSYITELASAVPTAANIAHYAKIVEEKAILRRLIRVASKIAD 127 Query: 585 --YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 Y R + E EK++ +V+ + A + +L + I Q++S+E + G Sbjct: 128 DGYTREDEVEILLAEAEKKMLEVSNRKNAGDFKHVKDVLVQTFDNIEQLQSREGDVTG 185 >gi|319641223|ref|ZP_07995923.1| hypothetical protein HMPREF9011_01520 [Bacteroides sp. 3_1_40A] gi|317387156|gb|EFV68035.1| hypothetical protein HMPREF9011_01520 [Bacteroides sp. 3_1_40A] Length = 295 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 19/87 (21%) Query: 7 FIKDLLIHIPISNLIGQ------YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 I++ + I + + Q YV YW P DE++PSF ND Sbjct: 2 TIEEAKQ-VRIVDFLAQLGHHAQYVK---------SDQYWYLSPLRDEQSPSFKVNDRLN 51 Query: 61 FYYCFSCHVKGDHL---SFLSALLGCS 84 +Y F GD + +L S Sbjct: 52 EWYDFGAATGGDLVELGKYLYQTESVS 78 >gi|293370969|ref|ZP_06617511.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292633899|gb|EFF52446.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 319 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 Y R+ N W PF +E SF N + +Y F+ G+ + Sbjct: 20 YSPVKRQGINL-----WYKSPFREETEASFKVNTERNQWYDFALGKGGNII 65 >gi|163857364|ref|YP_001631662.1| replicative DNA helicase [Bordetella petrii DSM 12804] gi|163261092|emb|CAP43394.1| dnaB [Bordetella petrii] Length = 457 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 15/197 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 S L ++ E ++L L+ + L + + ++ + +W + Sbjct: 3 NPADSQLDYLRVPPHSIEAEQSVLGGLLLDNSAWDRIADVLGEEDFYRHDHRLIWHHIAR 62 Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV---- 574 + +++ L G E L L A E Sbjct: 63 LVGLARPADVITVNESLVSAGKAEETGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRK 122 Query: 575 ---RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIH 629 + AL + + + +E E ++ ++ +GE + +L +V +I Sbjct: 123 LVTIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGEKGSVGFQEIQPLLTQVVERID 182 Query: 630 QIESQEAMIEGFGKMSG 646 ++ +E + G +G Sbjct: 183 ELYHREGDSDVTGVPTG 199 >gi|221232049|ref|YP_002511201.1| hypothetical protein SPN23F_12670 [Streptococcus pneumoniae ATCC 700669] gi|220674509|emb|CAR69070.1| putative uncharacterized protein [Streptococcus pneumoniae ATCC 700669] Length = 361 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 19/163 (11%), Positives = 54/163 (33%), Gaps = 34/163 (20%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECK-KISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYYPLK 100 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + ++ + ++ + + + + + + + Sbjct: 101 RIEDSNCSLARYYLTECRGISEEIIQKMIQQGLMSQASWKTNE 143 >gi|4006911|emb|CAB16841.1| trichohyalin like protein [Arabidopsis thaliana] gi|7270600|emb|CAB80318.1| trichohyalin like protein [Arabidopsis thaliana] Length = 1432 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 34/342 (9%), Positives = 103/342 (30%), Gaps = 15/342 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 LL ++ + + + + E + + Sbjct: 528 KHRNLLKPEENKLFTEKPAKQKKELLCEEKTKRIQNQQLDKKTHQKAAETNQECVYDWEQ 587 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 K +L + L + + + + + IK+ +LR Sbjct: 588 NARKLREALGNESTLEVSVELNGNGKKMEMRSQSETKLNEPLKRMEEETRIKEARLREEN 647 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + +R+ + +K + ++ + ++ ++ + K ++ ++E Sbjct: 648 DRR--ERVAVEKAENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKE 705 Query: 485 AALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE-------QKYFLP 534 L + +++ + + + +++ + E +K L Sbjct: 706 QQELELQLK--EAFEKEEENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELE 763 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + +K+ + + E + + +R +R+ Sbjct: 764 QRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETRE 823 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635 KEE +K++ + E EK I E+ ++ + +E +E Sbjct: 824 KEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEE 865 >gi|300791103|ref|YP_003771394.1| replicative DNA helicase [Amycolatopsis mediterranei U32] gi|299800617|gb|ADJ50992.1| replicative DNA helicase [Amycolatopsis mediterranei U32] Length = 469 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 24/71 (33%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + + + L + Q ++ + + + P Sbjct: 30 RQPPQDIAAEQSVLGGMLLSKDAVADVIEALGPDDFYRPAHQAIYDCILDLYGRGEPADP 89 Query: 535 EEIHQRLCERG 545 + L RG Sbjct: 90 ITVSAELERRG 100 >gi|256086971|ref|XP_002579655.1| myosin heavy chain [Schistosoma mansoni] gi|238665123|emb|CAZ35894.1| myosin heavy chain, putative [Schistosoma mansoni] Length = 1591 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 888 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 948 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136 Score = 41.0 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E A Sbjct: 1082 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1140 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 1141 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1200 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ ++T + + Sbjct: 1201 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1260 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612 V + +Q + L++ K+++ Q+ + E E Sbjct: 1261 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1320 Query: 613 --KTAILISILHEVHIQIHQIESQ 634 S ++ Q+ +++ + Sbjct: 1321 RETLEEEQSAKGDLQRQLQKLQGE 1344 >gi|298249899|ref|ZP_06973703.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] gi|297547903|gb|EFH81770.1| zinc finger CHC2-family protein [Ktedonobacter racemifer DSM 44963] Length = 416 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 18/91 (19%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF---HDE---KTPSFHCNDSKG 60 I+ ++IG+YVD + + CPF H + S KG Sbjct: 323 TIQQWCAQQDSVSIIGRYVDLNAKG--------LGFCPFGWHHSDGKDTRRSLWVYQPKG 374 Query: 61 F----YYCFSCHVKGDHLSFLSALLGCSFIE 87 +YC + G FL G E Sbjct: 375 SDLCCWYCHAWQRGGSVFDFLRLYHGLEARE 405 >gi|150004070|ref|YP_001298814.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|154491558|ref|ZP_02031184.1| hypothetical protein PARMER_01169 [Parabacteroides merdae ATCC 43184] gi|149932494|gb|ABR39192.1| DNA primase [Bacteroides vulgatus ATCC 8482] gi|154088359|gb|EDN87404.1| hypothetical protein PARMER_01169 [Parabacteroides merdae ATCC 43184] Length = 287 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 W PF EK SF + K +Y F GD ++ + Sbjct: 31 WYKSPFRTEKEASFKVDLHKELWYDFGLGRGGDIITLAKEI 71 >gi|134301130|ref|YP_001114626.1| replicative DNA helicase [Desulfotomaculum reducens MI-1] gi|134053830|gb|ABO51801.1| primary replicative DNA helicase [Desulfotomaculum reducens MI-1] Length = 440 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/174 (13%), Positives = 57/174 (32%), Gaps = 18/174 (10%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + L + + + ++ + + Sbjct: 4 RVPPQNLEAEQSVLGAMLLERDAIFRVMEFLKPEDFYRDSHRIIYEVILELAEAGRPVDL 63 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +RG E + + A L A + Y + + + LSR Sbjct: 64 ITVSDILRDRGDLEKIGGVTYVATLANLVPTAANA------EYYARIVE----EKALSRA 113 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-------EAMIEGF 641 + +I+ +G E L+ +++ Q S E +I+ F Sbjct: 114 LISVTTRISSRGYEG-TESPEELLEDAERSILELGQRRSTDSFTPIKEILIKAF 166 >gi|167771721|ref|ZP_02443774.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM 17241] gi|167666361|gb|EDS10491.1| hypothetical protein ANACOL_03093 [Anaerotruncus colihominis DSM 17241] Length = 623 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y + I L + + + + Q + + HD S +K Sbjct: 1 MQYTQAQID-LANAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84 >gi|86606214|ref|YP_474977.1| replicative DNA helicase [Synechococcus sp. JA-3-3Ab] gi|86554756|gb|ABC99714.1| replicative DNA helicase [Synechococcus sp. JA-3-3Ab] Length = 591 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 58/177 (32%), Gaps = 12/177 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E +L ++ P + + L + + Q+++ + + + Sbjct: 12 RLPPQNIEAEEEILGGILLDPEAMARVAELLRPEMFYLSAHQEIYRAALQLYSQGQPTDL 71 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593 + L + L+R A + + Y + + Y R RL+ Sbjct: 72 TTVSAWLADHQL------LERVGGTAAIRRLVEQTVSSVNIDQYARLVVDKYMRRRLI-- 123 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE---SQEAMIEGFGKMSGR 647 Q ++A T++ + + + + Q + E ++ F ++ R Sbjct: 124 QVSNTLARLAYDTSQPLPQLLDRAEQEVFSLTQERVQRSLVPASEVLVNIFSELEER 180 >gi|217977702|ref|YP_002361849.1| hypothetical protein Msil_1537 [Methylocella silvestris BL2] gi|217503078|gb|ACK50487.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 103 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Query: 34 AVKGDYWACCPFHDEKT-PSFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQR 91 ++ A P ++ SF N + G + FS GD +S + L G S +E+ ++ Sbjct: 33 REGHEWVAHNPTRQDRRRGSFKVNLNTGRWSDFSTGDAGGDLVSLAAYLFGLSQVEAARK 92 Query: 92 LAAIAGVPLPV 102 +A + GV L Sbjct: 93 VADMLGVDLFE 103 >gi|91204549|emb|CAJ70777.1| strongly similar to replicative DNA helicase [Candidatus Kuenenia stuttgartiensis] Length = 447 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 58/178 (32%), Gaps = 12/178 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E +++ ++ ++ L + Q ++ + + + + Sbjct: 9 RTLPQSLDAEMSVIGAMLLDNEVINVVVPILNKQSFYKTAHQSIYQAIIDLYDKGQAIDL 68 Query: 535 EEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L +R E L +L+ V G + + +A + Sbjct: 69 VLLREELKKRSLLENVGGAEYLVELEEAVPTIGNVEYYANIVRENAIKRNLIEVAANIQK 128 Query: 589 RLLSR------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + + E+ I ++T K + L IL E +I + +E+ + G Sbjct: 129 QAFEGAVDTGFLLDSSERAIFEITQKKFNASSIKLNEILKETFSRIENLHDRESRLTG 186 >gi|224025014|ref|ZP_03643380.1| hypothetical protein BACCOPRO_01748 [Bacteroides coprophilus DSM 18228] gi|224018250|gb|EEF76248.1| hypothetical protein BACCOPRO_01748 [Bacteroides coprophilus DSM 18228] Length = 298 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 9/82 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN I + + + + YW P+ +EKT SF ND Sbjct: 1 MNISDA------KQIRLVDFL---CKLGFSPVKRLNYQYWYIAPYREEKTASFKVNDQLN 51 Query: 61 FYYCFSCHVKGDHLSFLSALLG 82 +Y F G + + Sbjct: 52 EWYDFGISEGGSIIELGMKIYN 73 >gi|325672817|ref|ZP_08152511.1| replicative DNA helicase DnaB [Rhodococcus equi ATCC 33707] gi|325556070|gb|EGD25738.1| replicative DNA helicase DnaB [Rhodococcus equi ATCC 33707] Length = 462 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 51/160 (31%), Gaps = 15/160 (9%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G+ + E ++L ++ + + + L + Q ++ + + + Sbjct: 24 GRQPPHDMVAEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAHQSVYDAILDLYSRGEPAD 83 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + L RG +L R L + T Y + +A + + R Sbjct: 84 PVTVSAELDRRG------ELRRIGGAPYLVTLTQTVPTAANAAYYAEIVA----EKSILR 133 Query: 594 QKEEIEKQIAQVTAKGE-----AEKTAILISILHEVHIQI 628 + + +I Q G AE + + EV + Sbjct: 134 RLVDAGTRIVQYGYAGSDGQDVAEVVDRAQAEIFEVTERR 173 >gi|225873016|ref|YP_002754475.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196] gi|225791594|gb|ACO31684.1| replicative DNA helicase [Acidobacterium capsulatum ATCC 51196] Length = 467 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 16/166 (9%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ E ++++ + + Q++++ + + + + L Sbjct: 19 AERTILGAVLLDNNAYNEAAEKISADDFAQSAHQRIFARMAELIDSGRPVDIVTLAEELA 78 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-Q 601 R K+++ A + S T Y + + + + L RQ I Sbjct: 79 RR------KEIETIGGVAYIASLTEGLPRSLAIDEYVRIV----KDKSLLRQIITISSNA 128 Query: 602 IAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ--EAMIEGFG 642 I + + E + + L I Q + E + + FG Sbjct: 129 ITRAADQSEDALDVLNAAEGALLQVTERSISQGFASIPEIVRDSFG 174 >gi|12958158|gb|AAK09264.1| DnaB [Mycobacterium intracellulare] Length = 459 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 15/166 (9%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S G+ + E A+L ++ + + L + Q ++ + + Sbjct: 15 SPSEDFGRQPPQDMAAEQAVLGGMLLSKDAIANVLERLRPGDFYRPAHQNVYDAILDLYG 74 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L LL+++ L S A GY + Sbjct: 75 RGEPADAVTVAAELDR---RNLLRRIGGAPYLHTLISTVPTA----ANAGYYATIVA--- 124 Query: 588 FRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISILHEVHIQI 628 + L R+ E ++ Q AE + ++EV + Sbjct: 125 EKALLRRLVEAGTRVVQYGYAGAEGADVAEVVDRAQAEIYEVADRR 170 >gi|224024740|ref|ZP_03643106.1| hypothetical protein BACCOPRO_01468 [Bacteroides coprophilus DSM 18228] gi|224017962|gb|EEF75974.1| hypothetical protein BACCOPRO_01468 [Bacteroides coprophilus DSM 18228] Length = 323 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+D+ I +++ + Y ++ N W P +E SF N +Y Sbjct: 2 TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55 Query: 65 FSCHVKGDHL 74 F G+ + Sbjct: 56 FGIGKGGNII 65 >gi|256751052|ref|ZP_05491935.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] gi|256750162|gb|EEU63183.1| conserved hypothetical protein [Thermoanaerobacter ethanolicus CCSD1] Length = 628 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 43 CPFHDEKTPSFHCNDSKG---FYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAGV 98 C FHD+K PS ++ Y CF+C+V + + + L + +++ + + + Sbjct: 277 CIFHDDKNPSAGIFRNENDDWIYNCFACNVSYNIIGVIERLGNFKTRVDTYDFIKKMLNI 336 Query: 99 PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + + + ++K + L L +F + + ++ R ++ I ++ Sbjct: 337 EITETEFQQKQKAILLETLQALYSE--EFLKYCPQTNKNIRTIREYLQQLILIAMDNIYD 394 >gi|257437552|ref|ZP_05613307.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] gi|257199859|gb|EEU98143.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] Length = 625 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + GQ R HD S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQGQGEQLIRAGNEYRWKR-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +Y S G + F+ G SF E+V+ L Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAVEML 79 >gi|256841205|ref|ZP_05546712.1| DNA primase [Parabacteroides sp. D13] gi|256737048|gb|EEU50375.1| DNA primase [Parabacteroides sp. D13] Length = 323 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+D+ I +++ + Y ++ N W P +E SF N +Y Sbjct: 2 TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55 Query: 65 FSCHVKGDHL 74 F G+ + Sbjct: 56 FGIGKGGNII 65 >gi|195579744|ref|XP_002079721.1| GD24107 [Drosophila simulans] gi|194191730|gb|EDX05306.1| GD24107 [Drosophila simulans] Length = 1106 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 20/242 (8%) Query: 405 EIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 ++ IKD ++ + + ++LQ + ++ + + + + + ++ +G Sbjct: 719 LQQVQEANGDIKDSLVKVEELVKVLEEKLQAATSQLESQQATHKKLQELLVKSQENEG-- 776 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD----IRYDNNELQKLW 519 L SL + + L L L+E +L + + ++ Sbjct: 777 -NLQGESLAVTEKLHQLEQANGELKEALCQKENGLKELEGKLEESNTLLESQKKSHNEIQ 835 Query: 520 SFLFSDFVEQKYFLPE--EIHQRLCE--RGFGELLKQLDR--QVRDAGLWSATTEANIVD 573 L +++ E ++ ++L + + EL K L + + + G T A Sbjct: 836 DKLEQAQQKERNLQEETSKLAEQLSQLKQANEELQKSLQQKQLLLEKGNEFDTQLAEYQK 895 Query: 574 VRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 V A ++ L ++ E+E + Q +A+KTA L E+ Q+ +E Sbjct: 896 VIDEMDDAASVKSTLLEQLQKRVAELEAALRQAN---DAQKTAYL--EAQELRRQLESLE 950 Query: 633 SQ 634 + Sbjct: 951 LE 952 >gi|89897775|ref|YP_521262.1| hypothetical protein DSY5029 [Desulfitobacterium hafniense Y51] gi|219670924|ref|YP_002461359.1| replicative DNA helicase [Desulfitobacterium hafniense DCB-2] gi|89337223|dbj|BAE86818.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219541184|gb|ACL22923.1| replicative DNA helicase [Desulfitobacterium hafniense DCB-2] Length = 444 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 15/168 (8%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ E ++L L+ P + ++ + + + ++++ L F + Sbjct: 4 TKVPPHNLEAEQSVLGALMLDPEVGSSVFEVVQPEDFYRDNHRQIFLALRDLFEKGDPID 63 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L + G E + + + A + + Y + +A + L R Sbjct: 64 LVSVAESLRQSGRLEQIGGIATISQIARSVPSAVNC------EYYARIVA----EKSLLR 113 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 Q QIA+ + E L+ ++ + + Q + + +GF Sbjct: 114 QLIRSSGQIAEKGYEP-GEAATSLLEEAEKMIMDLSQRQ----VKDGF 156 >gi|229496269|ref|ZP_04389989.1| putative mobilizable transposon, excision protein [Porphyromonas endodontalis ATCC 35406] gi|229316847|gb|EEN82760.1| putative mobilizable transposon, excision protein [Porphyromonas endodontalis ATCC 35406] Length = 314 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 22/130 (16%) Query: 21 IGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFL 77 I Y+ K Y A P+ ++ S + + ++ + G + + Sbjct: 16 IADYLHACGIKPAKRYNGYALYHA--PYREDPNASLKVDFRQNLWHDYGTSQGGSIIDLV 73 Query: 78 SALLGCSFIESVQRLAA-------------IAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 + GCS ++ LA A + + E++ ++ + E Sbjct: 74 MKMRGCSAYGAIAHLAEGKATTLAPSSFHREAHI----GQRRDEQRPNNTRRILSINEAL 129 Query: 125 TDFFHHSLKN 134 L+ Sbjct: 130 PLHLQSYLRE 139 >gi|220905500|ref|YP_002480812.1| hypothetical protein Ddes_2238 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869799|gb|ACL50134.1| hypothetical protein Ddes_2238 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 198 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 CPF + SF C C+ GD + F + S E+ + LA + Sbjct: 27 CPFCN--KLSFKIYPD-QLAKCHNNVCNWYGDVIQFYTDFKKISRSEAFKELAGRLDLKK 83 Query: 101 PVVDPKIEKKEKIQTDLIRLIEV 123 +V+ K + ++ + L +E Sbjct: 84 SIVEIKEQTFDEARMALAEDLEF 106 >gi|325115434|emb|CBZ50989.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 2242 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 86/282 (30%), Gaps = 16/282 (5%) Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN-HIKDQ------KLR 421 + L + P D RE E+ S + A + I+D R Sbjct: 1300 DSSLGLPEQEGPNGDRKRAREGEDTSEAGVSKDAAILPEGCEEERGKIEDPRCSEAFVQR 1359 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + +K E G +W + + + G + L + + ++ Sbjct: 1360 ALAMRDFSYLAEAVLEKRAREKDGGDEHWSRARKTVEPAGTLEALAEKAREDQTALERLE 1419 Query: 482 ---LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD----FVEQKYFLP 534 L + +L A E+ L E + + Sbjct: 1420 AECLSARTAIASLKADLARTTEEKDALRKESEKKEEERVRKEQALEQRKRELEDAFEKER 1479 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + +RL RG + ++ + + + Q A L + L+R+ Sbjct: 1480 AALEERLR-RGVEAERAKRRQETEGKAQEKREAHDDSAEKEKLRQHAQTLAAAYGALARK 1538 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 E+E+ + K + E+ L+ L + ++ Q E + A Sbjct: 1539 V-ELEEALRGQAMKKKEEEMRNLLDHLKQQEARLRQREEENA 1579 Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 42/127 (33%), Gaps = 14/127 (11%) Query: 527 VEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E++ Q +G L ++++ + G E + ++ +Q A Sbjct: 1511 AHDDSAEKEKLRQHAQTLAAAYGALARKVELEEALRGQAMKKKEEEMRNLLDHLKQQEAR 1570 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAE------------KTAILISILHEVHIQIHQIE 632 ++ + Q + + K E E +T L L + ++ + + Sbjct: 1571 LRQREEENAQLHAQLQALRTHAQKSEDERQRNLDTPPQARETEALRRQLQDATQELTRQQ 1630 Query: 633 SQEAMIE 639 + ++E Sbjct: 1631 QKIRLLE 1637 >gi|149923442|ref|ZP_01911846.1| replicative DNA helicase [Plesiocystis pacifica SIR-1] gi|149815694|gb|EDM75221.1| replicative DNA helicase [Plesiocystis pacifica SIR-1] Length = 514 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 64/211 (30%), Gaps = 12/211 (5%) Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQE 500 + A R ++ + E A++ L+ L E Sbjct: 4 RVEDPSTSTPRRAPERADLATGLPAPPPAMNAPRTLPHRPEAENAVIGGILLRGRDALGE 63 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + + + + Q ++ + + + +L G EL+ ++ R Sbjct: 64 VLELITEDDFYQPRTQAVFRAMRILEERGEPIDVITLEAQLGRTGELELVGGIEGLARFD 123 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEI----------EKQIAQVTAKG 609 +A ++ + L R ++ + EE+ E++I +V +G Sbjct: 124 RYATAHNIKAHAELVRESAMVRNLVVATREIAEEGMEELEDVKAYVDTAEQRILKVNERG 183 Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEG 640 ++ EV I + + Q I G Sbjct: 184 RKSSYRSSRELMLEVFQNITERQRQTDPITG 214 >gi|255531955|ref|YP_003092327.1| replicative DNA helicase [Pedobacter heparinus DSM 2366] gi|255344939|gb|ACU04265.1| replicative DNA helicase [Pedobacter heparinus DSM 2366] Length = 522 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 60/198 (30%), Gaps = 21/198 (10%) Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + + RL + G++ + E A+L L+ L L Sbjct: 5 QPQGQDKANFSARKTRLSNTMSTMGRIPPQAIDLEEAILGALMLEKDALSTVIDILKPEM 64 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-------------------L 550 + + +K++ + F + K + L G E+ + Sbjct: 65 FYHEAHKKIFEAIQGLFQKSKPVDILTVTAELRTLGLLEMIGGAYYITNLTNRVASAANI 124 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI-EKQIAQVTAKG 609 + R V + + ++ Y+ ++ + +I + + + T K Sbjct: 125 EFHARIVSQKYIQRELIRISSEIIQNAYEDTTDIFDLLDHAEKNLFDIAQNNLRRDTQKM 184 Query: 610 EAEKTAILISILHEVHIQ 627 + E ++ L E+ + Sbjct: 185 D-EIVKQSLATLEELRSK 201 >gi|156938172|ref|YP_001435968.1| SMC domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156567156|gb|ABU82561.1| SMC domain protein [Ignicoccus hospitalis KIN4/I] Length = 878 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 32/235 (13%), Positives = 76/235 (32%), Gaps = 13/235 (5%) Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + R + + + + +K + R + + +R Sbjct: 433 RDSCPVCGSPLPPERRESLIRRYAEEVAKFEEKLTELKAREKRLETEARLLESRLEKLKR 492 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + + L AL L L + E ++L+ R KL + + Sbjct: 493 ALDKARARLESLGFEDL--DALGLYLADLKKRFNELKEQLSRTRASVEHYDKLVKEVKEE 550 Query: 526 FVEQKYFLPEEIHQRLCERGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + +L E E +L+Q++ Q+ + A+ E + ++ L + Sbjct: 551 L--------SAVTAQLEELKRKEGMLRQIEHQLEELRGVDASKEEEVEKRLSEIKKELEV 602 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 L R+ E+E+ ++ A + E+ ++ + EA +E Sbjct: 603 LGSPEELERRIAELERLASKKKELSAAAELKR--REEAELKRELASLGFDEASLE 655 Score = 43.7 bits (101), Expect = 0.087, Method: Composition-based stats. Identities = 29/263 (11%), Positives = 92/263 (34%), Gaps = 14/263 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 E+ + + + T + N + + L + +N IK+ + + + ++ Sbjct: 169 EASLREIINYYKGTASNLVNVQRTYEKYKKELNSEMNRIKELQEKLPLLKEELRMVEDKL 228 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 +E + K + + Q Q +++ + + + E LL + + Sbjct: 229 NDLRSELNELKEKKAKYQKVKAQLMKVQEELRTLIGELEALSDLDEAELNLLRSKLVKVK 288 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 L + L + ++L + + E + E + + E+L++ Sbjct: 289 DLSLIKERLENELKAIKSKKELLAKREAVKSELRKLKDLERRRDELSKKLDEMLERRQLL 348 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 V G E ++++ + + L + L+ ++E+++ ++ Sbjct: 349 VMKLGTLEKEVEEIEKEIKRIEKNYVVLERELDGLT--ISDLEQRVTELE---------- 396 Query: 617 LISILHEVHIQIHQIESQEAMIE 639 + V ++ ++ ++ ++E Sbjct: 397 --KMYENVKKELEEVTNERRLVE 417 >gi|315925588|ref|ZP_07921798.1| replicative DNA helicase DnaB [Pseudoramibacter alactolyticus ATCC 23263] gi|315621129|gb|EFV01100.1| replicative DNA helicase DnaB [Pseudoramibacter alactolyticus ATCC 23263] Length = 452 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 63/196 (32%), Gaps = 28/196 (14%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + + EA++L LI + L + L + + Q+++ + + + Sbjct: 2 PTNPRQLPHSAEAEASVLGGLIMNAEKLMVAEEHLRAEDFYDPRNQQIYQNILAMREAGQ 61 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + QRL + +L++++ A L + + Q AL +R Sbjct: 62 PLDLVTLTQRLTDV---DLIEKIGGPAYLAALVQQVPMLSNFENYCVIVQDQALLRRLVQ 118 Query: 591 LSRQK---------------EEIEKQI---AQVTAKGEA----EKTAILISILHEVHIQI 628 S E E++I + KG+ + I + EV Sbjct: 119 ASSDILDDCYGEYESVADVVEAAERKIFQVGEGQIKGDFAAIGDVVGETIQHIEEVRTHR 178 Query: 629 HQIESQEAMIEGFGKM 644 + + GF ++ Sbjct: 179 GE---TTGLATGFKEL 191 >gi|229491315|ref|ZP_04385140.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis SK121] gi|229321772|gb|EEN87568.1| ATP-dependent chaperone protein ClpB [Rhodococcus erythropolis SK121] Length = 877 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 16/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + R ++ + +++ + ++ +++ AL+ + ++H Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + E + Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A L E + + A ++ R R+ +E+ ++ ++ + E + Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498 Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644 ++ + + ++ E Q A +G + Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536 >gi|159028917|emb|CAO90722.1| dnaB [Microcystis aeruginosa PCC 7806] Length = 585 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 12/173 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L + E ++L ++ P L L + Q ++ + + K Sbjct: 5 QSLPPQNIEAEESILGGILLDPKALGRISDFLIPEAFYVKTHQDIYRAALALQGKGKPTD 64 Query: 534 PEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ---ALA 583 + L + G LL+ ++R V A + +R+ + Sbjct: 65 LMTVSSWLQDNHLLEEIGGMPRLLQLIERTVSAANIDRYAELVMDKYMRRQLISTGGEII 124 Query: 584 LYKRFRLLSRQK--EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R L + +E E++I ++T K E L L E +I +++ Sbjct: 125 ELARDTTLELENVFDESEQKIFRLTQKRPQEGLIFLGDTLIETFNEIEKMQET 177 >gi|111023664|ref|YP_706636.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii RHA1] gi|110823194|gb|ABG98478.1| ATP-binding subunit of heat shock protein ClpB [Rhodococcus jostii RHA1] Length = 789 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 16/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + R ++ + +++ + ++ +++ AL+ + ++H Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSAEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + E + Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A L E + + A ++ R R+ +E+ ++ ++ + E + Sbjct: 442 -AASKARLEELRKELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498 Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644 ++ + + ++ E Q A +G + Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536 >gi|14346042|gb|AAK59986.1| CCAAT displacement protein CDP [Mus musculus] Length = 1517 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 150 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 207 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 328 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 373 >gi|321468531|gb|EFX79515.1| hypothetical protein DAPPUDRAFT_304474 [Daphnia pulex] Length = 541 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + +++ + + + + LL++L V Sbjct: 338 ENFLFTGPLQRRIQQIASRNGLGDPSPEVVSLISHATQERLKTLLEKLA--VTAEHRMEV 395 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQI----AQVTAKGEAEKTAILISI 620 +V+Q + L + L R++ EI++++ A+ +K E + A L + Sbjct: 396 VKTDARYEVQQDVKGQLKFLEELDKLERRRHSEIQREMLLKAAKSRSKAEDPEQAKLKAK 455 Query: 621 LHEVHI-QIHQIESQEAMI 638 E+ ++ ++ +EA + Sbjct: 456 AKEMQRAEMEELRQREANM 474 >gi|154149142|ref|YP_001406556.1| replicative DNA helicase [Campylobacter hominis ATCC BAA-381] gi|153805151|gb|ABS52158.1| replicative DNA helicase [Campylobacter hominis ATCC BAA-381] Length = 485 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 11/98 (11%), Positives = 33/98 (33%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L ++ + E + + D + ++ + S + + + +RL Sbjct: 16 ERSILSSIFFNEDAFSEVFGIIDDKDFYLKAHADIFKAMMSCYSHDEPIDIGFVKKRLEN 75 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 E+L ++ + E +R+ + Sbjct: 76 NYNEEILSEILSLSALVDVEKYARELKDKSIRRNLLKI 113 >gi|307127267|ref|YP_003879298.1| hypothetical protein SP670_1135 [Streptococcus pneumoniae 670-6B] gi|306484329|gb|ADM91198.1| conserved hypothetical protein [Streptococcus pneumoniae 670-6B] gi|327474316|gb|EGF19723.1| zinc finger protein [Streptococcus sanguinis SK408] Length = 361 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97 >gi|119510465|ref|ZP_01629598.1| DnaB helicase [Nodularia spumigena CCY9414] gi|119464887|gb|EAW45791.1| DnaB helicase [Nodularia spumigena CCY9414] Length = 451 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 10/139 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E A+L ++ P + L I + + + ++ + K Sbjct: 14 RLPPQNIEAEEAILGGILLDPEAIGRVSDRLLPIAFYISAHKDIYQAALRLHAQGKPTDL 73 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L + ++L ++ + + A L T A +D G + L RQ Sbjct: 74 LSVTSWLADN---DILARIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRRQ 123 Query: 595 KEEIEKQIAQVTAKGEAEK 613 + +I + + E E Sbjct: 124 LIKAGNEIVHLGYETEQEL 142 >gi|16552142|dbj|BAB71249.1| unnamed protein product [Homo sapiens] Length = 883 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 99/265 (37%), Gaps = 21/265 (7%) Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445 +R+ + N + + E E N + + ++ RL++ + Sbjct: 626 LQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEE 685 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA-ALLLTLINHP----AILQE 500 + + +H+ + Q + + +K+ RE AL+ L+ +L Sbjct: 686 LFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIA 745 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + ++ +R EL L L + +++ ++ + L + ++ ++ Sbjct: 746 KEEQEDLLRKRERELTALKGALKEEVSSH-DQEMDKLKEQY-DAELQALRESVEEATKNV 803 Query: 561 GLWSATTEANIVD-------VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + ++ + + D V+ ++ L R L R+ ++++QI + KG+ K Sbjct: 804 EVLASRSNTSEQDQAGTEMRVKLLQEENENLQGRSEELERRVAQLQRQIEDL--KGDEAK 861 Query: 614 TAILISILHEVHIQIHQIESQEAMI 638 L + +I Q+E EA++ Sbjct: 862 AKET---LKKFEGEIRQLE--EALV 881 Score = 42.6 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 31/249 (12%), Positives = 86/249 (34%), Gaps = 12/249 (4%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 +++++L I + ++ + + R+R++ ++ ++H+ + + Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + R L + K+ ++ E L + + + + R ++ E L Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728 Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L + + L + Q R ER L L +V + Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788 Query: 575 RQGYQQALALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 Q ++++ + + + E ++ ++ K E+ L E+ ++ Q+ Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENENLQGRSEELERRVAQL 848 Query: 632 ESQEAMIEG 640 + Q ++G Sbjct: 849 QRQIEDLKG 857 >gi|256086969|ref|XP_002579654.1| myosin heavy chain [Schistosoma mansoni] gi|238665122|emb|CAZ35893.1| myosin heavy chain [Schistosoma mansoni] Length = 1493 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 790 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 850 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 903 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 904 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 964 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038 Score = 40.6 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E A Sbjct: 984 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1042 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 1043 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1102 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ ++T + + Sbjct: 1103 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1162 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612 V + +Q + L++ K+++ Q+ + E E Sbjct: 1163 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1222 Query: 613 --KTAILISILHEVHIQIHQIESQ 634 S ++ Q+ +++ + Sbjct: 1223 RETLEEEQSAKGDLQRQLQKLQGE 1246 >gi|114773239|ref|ZP_01450474.1| replicative DNA helicase [alpha proteobacterium HTCC2255] gi|114546358|gb|EAU49267.1| replicative DNA helicase [alpha proteobacterium HTCC2255] Length = 470 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 47/132 (35%), Gaps = 8/132 (6%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + Q+ + + K+ E +++ +++ P + + + + + N Q Sbjct: 6 QADNEKKQKYNDEKVDRLKIPPHSIEAEQSVIGSMLISPDSWDKVAEIVIESDFYNRSHQ 65 Query: 517 KLWSFLFSDFVEQKYFLPE------EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 ++ + + E+H +L E G L +L + A + + A Sbjct: 66 VIYQSILKLLANNQPVDVITTSEHLELHDKLDEAGGFAYLAELAKNTPSAA--NVVSYAK 123 Query: 571 IVDVRQGYQQAL 582 I+ R ++ + Sbjct: 124 IIKERAIIRELI 135 >gi|885934|gb|AAB09631.1| ClpB [Synechococcus elongatus PCC 7942] Length = 883 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + + + + L Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448 Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 Q R L + + +Q + + + + +++ I Q + K Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 508 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ +++++E A Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532 >gi|257463122|ref|ZP_05627523.1| replicative DNA helicase [Fusobacterium sp. D12] gi|317060718|ref|ZP_07925203.1| replicative DNA helicase [Fusobacterium sp. D12] gi|313686394|gb|EFS23229.1| replicative DNA helicase [Fusobacterium sp. D12] Length = 446 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 57/170 (33%), Gaps = 11/170 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 SL + E A+L + P + +E + ++ + N ++ + + E Sbjct: 2 KSLEEISKVPHSLEAEQAILGGIFVEPDLFEEVLEIVSPEDFYKNIYSLIFRSMLEVYRE 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 I +L + Q + + + + A + Sbjct: 62 SNEIDMVLIKNKLLQ----------MHQFTEEQIHEELSNILENSFSAVNLKEYARLVKE 111 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + + R+ E ++I ++ + + + ++ + +++ Q + + +I Sbjct: 112 KAILRRLGEAGRKITEIAYRDDRD-AEDILDEAESIVLKVDQQKKGKEII 160 >gi|126739844|ref|ZP_01755535.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6] gi|126719076|gb|EBA15787.1| hypothetical protein RSK20926_14189 [Roseobacter sp. SK209-2-6] Length = 791 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 95/264 (35%), Gaps = 13/264 (4%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + +LE L + R ++ + L Q+ + + Sbjct: 277 TLLAAAEQARIQLQTQLEDALSTLEAAKAQSQERDELAERLTRILSQMQVTQSSAQARVT 336 Query: 448 RYWKKNARHRDQKGPSQRLMQSSL--VKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 + R RD+ ++ + ++L + + ++ + +A L + + +EL Sbjct: 337 ALEAEMTRLRDEHTATRERLAANLEAARQQATQSQAALQAELARQRAANVETRSQYQEEL 396 Query: 506 ADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLC---------ERGFGELLKQLDR 555 A ++ + E Q L L + E + E + QRL + G L+Q + Sbjct: 397 ARLQNTHAEAEQALKQQLQAAKAEAETVRRE-LEQRLAAATADAVDIQAGLETRLQQAEA 455 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + A ++++E + V QAL ++ + + + +++++ A + K Sbjct: 456 DLAAARTVASSSEEDRASVEMRLLQALEQLEQAQAAADDQAVLQQRLLAALADRDQAKDR 515 Query: 616 ILISILHEVHIQIHQIESQEAMIE 639 + +++++A+ E Sbjct: 516 AQEQQSLAQKREALLLQARQALSE 539 >gi|209693984|ref|YP_002261912.1| replicative DNA helicase [Aliivibrio salmonicida LFI1238] gi|208007935|emb|CAQ78067.1| replicative DNA helicase [Aliivibrio salmonicida LFI1238] Length = 465 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/139 (10%), Positives = 43/139 (30%), Gaps = 3/139 (2%) Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 R + + K+ E ++L L+ +++ + + + + ++ Sbjct: 4 NRNQNRKYDAQVDALKVPPHSLEAEQSVLGGLLLDNERWDTVAEKVVAVDFYSRPHRLIF 63 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + S + + + L E L + A L T A ++ Sbjct: 64 ESVKSILEDSMPLDLITLSEHLERH---EKLDSVGGFAYLADLVKNTPSAANINAYADIV 120 Query: 580 QALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 121 RERAMVRNLISVANEIADA 139 >gi|182684270|ref|YP_001836017.1| hypothetical protein SPCG_1300 [Streptococcus pneumoniae CGSP14] gi|182629604|gb|ACB90552.1| hypothetical protein SPCG_1300 [Streptococcus pneumoniae CGSP14] Length = 361 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97 >gi|255320907|ref|ZP_05362081.1| DNA primase TraC [Acinetobacter radioresistens SK82] gi|255302076|gb|EET81319.1| DNA primase TraC [Acinetobacter radioresistens SK82] Length = 318 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 51/349 (14%), Positives = 92/349 (26%), Gaps = 60/349 (17%) Query: 1 MNYPRDFIKDLLIHIPIS--NLIGQY----VDWDRRKTNAVKGDYWACCPFHDEKTPSFH 54 M+ PR + D+ ++I V + + CP T F Sbjct: 1 MSKPRFQLDDVKQKASGLWQDVIFPRFNIDVRFKK----------KTPCPACGG-TDRFR 49 Query: 55 CNDSKGF--YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 +D KG Y C C GD + +S + G SF E + +A+I G L ++ Sbjct: 50 YDDKKGSGDYICQHCGP-GDGFNLISKVTGLSFPEVLSEVASIVG--LDATSNITDEDRA 106 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 E E ++ + + + Sbjct: 107 RWKKEQEWREK-------------------------------ERLEMELKRQDQIARKAE 135 Query: 173 LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVK 232 +G + D ++ P + G++ +T+ Sbjct: 136 GIWRGAYLGEESPYLKAKQVDKDPKVKITHDGNVLIPAYDASGKMWNL--QTIESDGHKY 193 Query: 233 YLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQ 292 ++ E G Y + I + EGY +S+ A Sbjct: 194 FITGTENA---DGSVEYGGGRTGGCFFIIGEIQPDLYDNHIICIAEGYATGMSIHMATGH 250 Query: 293 NVVSSLGTALTEYQLRLLWKLSPR--IVLCFDGDDPGLRAAYKAIDLVL 339 V + L + P+ +V C D D K + Sbjct: 251 PVALAFVANNIPKVGIALKQKYPKSTLVYCADDDSAKQDTGLKCANQAH 299 >gi|50843678|ref|YP_056905.1| replicative DNA helicase [Propionibacterium acnes KPA171202] gi|289425889|ref|ZP_06427641.1| replicative DNA helicase [Propionibacterium acnes SK187] gi|289428161|ref|ZP_06429860.1| replicative DNA helicase [Propionibacterium acnes J165] gi|295131768|ref|YP_003582431.1| replicative DNA helicase [Propionibacterium acnes SK137] gi|50841280|gb|AAT83947.1| replicative DNA helicase [Propionibacterium acnes KPA171202] gi|289153665|gb|EFD02374.1| replicative DNA helicase [Propionibacterium acnes SK187] gi|289158641|gb|EFD06845.1| replicative DNA helicase [Propionibacterium acnes J165] gi|291375265|gb|ADD99119.1| replicative DNA helicase [Propionibacterium acnes SK137] gi|313765146|gb|EFS36510.1| replicative DNA helicase [Propionibacterium acnes HL013PA1] gi|313771585|gb|EFS37551.1| replicative DNA helicase [Propionibacterium acnes HL074PA1] gi|313794125|gb|EFS42145.1| replicative DNA helicase [Propionibacterium acnes HL110PA1] gi|313803246|gb|EFS44442.1| replicative DNA helicase [Propionibacterium acnes HL110PA2] gi|313811983|gb|EFS49697.1| replicative DNA helicase [Propionibacterium acnes HL083PA1] gi|313813934|gb|EFS51648.1| replicative DNA helicase [Propionibacterium acnes HL025PA1] gi|313817129|gb|EFS54843.1| replicative DNA helicase [Propionibacterium acnes HL059PA1] gi|313819075|gb|EFS56789.1| replicative DNA helicase [Propionibacterium acnes HL046PA2] gi|313821647|gb|EFS59361.1| replicative DNA helicase [Propionibacterium acnes HL036PA1] gi|313823783|gb|EFS61497.1| replicative DNA helicase [Propionibacterium acnes HL036PA2] gi|313826887|gb|EFS64601.1| replicative DNA helicase [Propionibacterium acnes HL063PA1] gi|313829257|gb|EFS66971.1| replicative DNA helicase [Propionibacterium acnes HL063PA2] gi|313832417|gb|EFS70131.1| replicative DNA helicase [Propionibacterium acnes HL007PA1] gi|313834152|gb|EFS71866.1| replicative DNA helicase [Propionibacterium acnes HL056PA1] gi|313839220|gb|EFS76934.1| replicative DNA helicase [Propionibacterium acnes HL086PA1] gi|314916848|gb|EFS80679.1| replicative DNA helicase [Propionibacterium acnes HL005PA4] gi|314919026|gb|EFS82857.1| replicative DNA helicase [Propionibacterium acnes HL050PA1] gi|314921144|gb|EFS84975.1| replicative DNA helicase [Propionibacterium acnes HL050PA3] gi|314926123|gb|EFS89954.1| replicative DNA helicase [Propionibacterium acnes HL036PA3] gi|314932510|gb|EFS96341.1| replicative DNA helicase [Propionibacterium acnes HL067PA1] gi|314956261|gb|EFT00633.1| replicative DNA helicase [Propionibacterium acnes HL027PA1] gi|314958759|gb|EFT02861.1| replicative DNA helicase [Propionibacterium acnes HL002PA1] gi|314960963|gb|EFT05064.1| replicative DNA helicase [Propionibacterium acnes HL002PA2] gi|314964021|gb|EFT08121.1| replicative DNA helicase [Propionibacterium acnes HL082PA1] gi|314968785|gb|EFT12883.1| replicative DNA helicase [Propionibacterium acnes HL037PA1] gi|314975082|gb|EFT19177.1| replicative DNA helicase [Propionibacterium acnes HL053PA1] gi|314977493|gb|EFT21588.1| replicative DNA helicase [Propionibacterium acnes HL045PA1] gi|314979081|gb|EFT23175.1| replicative DNA helicase [Propionibacterium acnes HL072PA2] gi|314985871|gb|EFT29963.1| replicative DNA helicase [Propionibacterium acnes HL005PA1] gi|314985938|gb|EFT30030.1| replicative DNA helicase [Propionibacterium acnes HL005PA2] gi|314989247|gb|EFT33338.1| replicative DNA helicase [Propionibacterium acnes HL005PA3] gi|315078268|gb|EFT50307.1| replicative DNA helicase [Propionibacterium acnes HL053PA2] gi|315081425|gb|EFT53401.1| replicative DNA helicase [Propionibacterium acnes HL078PA1] gi|315084932|gb|EFT56908.1| replicative DNA helicase [Propionibacterium acnes HL027PA2] gi|315087463|gb|EFT59439.1| replicative DNA helicase [Propionibacterium acnes HL002PA3] gi|315089627|gb|EFT61603.1| replicative DNA helicase [Propionibacterium acnes HL072PA1] gi|315096877|gb|EFT68853.1| replicative DNA helicase [Propionibacterium acnes HL038PA1] gi|315100063|gb|EFT72039.1| replicative DNA helicase [Propionibacterium acnes HL059PA2] gi|315102776|gb|EFT74752.1| replicative DNA helicase [Propionibacterium acnes HL046PA1] gi|315107329|gb|EFT79305.1| replicative DNA helicase [Propionibacterium acnes HL030PA1] gi|315110521|gb|EFT82497.1| replicative DNA helicase [Propionibacterium acnes HL030PA2] gi|327333011|gb|EGE74743.1| replicative DNA helicase [Propionibacterium acnes HL096PA2] gi|327334004|gb|EGE75719.1| replicative DNA helicase [Propionibacterium acnes HL096PA3] gi|327334422|gb|EGE76133.1| replicative DNA helicase [Propionibacterium acnes HL097PA1] gi|327448718|gb|EGE95372.1| replicative DNA helicase [Propionibacterium acnes HL043PA1] gi|327449087|gb|EGE95741.1| replicative DNA helicase [Propionibacterium acnes HL043PA2] gi|327450377|gb|EGE97031.1| replicative DNA helicase [Propionibacterium acnes HL013PA2] gi|327455536|gb|EGF02191.1| replicative DNA helicase [Propionibacterium acnes HL087PA3] gi|327456193|gb|EGF02848.1| replicative DNA helicase [Propionibacterium acnes HL083PA2] gi|327457558|gb|EGF04213.1| replicative DNA helicase [Propionibacterium acnes HL092PA1] gi|328756799|gb|EGF70415.1| replicative DNA helicase [Propionibacterium acnes HL087PA1] gi|328757688|gb|EGF71304.1| replicative DNA helicase [Propionibacterium acnes HL020PA1] gi|328759082|gb|EGF72698.1| replicative DNA helicase [Propionibacterium acnes HL025PA2] gi|328762191|gb|EGF75687.1| replicative DNA helicase [Propionibacterium acnes HL099PA1] gi|332676632|gb|AEE73448.1| replicative DNA helicase [Propionibacterium acnes 266] Length = 448 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 10/150 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S + + + E ++L +++ + + +E+ + + + +++ + Sbjct: 2 SSAPAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + L RG +L+R L T + Y + + Sbjct: 62 TDLYGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIV 115 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 A + + R+ E +IAQ+ +G+ E Sbjct: 116 A----EKAVLRRLVEASIRIAQMGYQGQGE 141 >gi|3834613|gb|AAC71025.1| homer-3 [Mus musculus] Length = 358 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 16/211 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 RL + + E + G + + + L + + + P E L Sbjct: 111 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 170 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 +++ ++ + Q++ + Q+L L + + QR + Sbjct: 171 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 228 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + +L+ QV + + EA V Q L R + ++ + ++ Q Sbjct: 229 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQEIQTLKNQSTGTREA 281 Query: 609 GEAEKTAILISILH-------EVHIQIHQIE 632 + + + E+ Q+ +E Sbjct: 282 PDTAEREETQQQVQDLETRNAELEQQLRAME 312 >gi|302039499|ref|YP_003799821.1| replicative DNA helicase [Candidatus Nitrospira defluvii] gi|300607563|emb|CBK43896.1| Replicative DNA helicase [Candidatus Nitrospira defluvii] Length = 445 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 21/182 (11%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + +++ + E A+L ++ PA+L + + + + ++ Q ++S + Sbjct: 1 MTMTTIEHPTMPPHDLDAERAILGAILLCPAVLATVGELVQETDFYDSHHQGIFSAMCRL 60 Query: 526 FVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + + L RG + +L V A + R+ Sbjct: 61 ENAGGAIDHIVVAEELKRRGLLEKVGGSAAVAELIETVATAANVTTHCRVVQEKARRRAV 120 Query: 580 Q--ALALYKR----FRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQ 630 + A L+ R L ++ E+ I + TA L++ ++H Sbjct: 121 RQMAFDLFTRSTDEQETLDALIDQAEQTIFGGQDLGQASSRITTAQLVNE------RLHH 174 Query: 631 IE 632 +E Sbjct: 175 LE 176 >gi|253565840|ref|ZP_04843294.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251944944|gb|EES85382.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 326 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 16/286 (5%) Query: 12 LIHIPISNLIGQYVDWDRRKTNAVKGDY-WACCPFHDEKTPSFHCNDSKGFYYCFSCHVK 70 IS I Y+++ + KG Y P ++ TPSF + + + + Sbjct: 4 KEANNIS--IKDYLNFLGIQPVTEKGSYGMYRSPLREDNTPSFKVDYNANLWCDYGTGEG 61 Query: 71 GDHLSFLSALLGCSFIESVQRLAA-------IAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 G + + C+ ++ RL G LP D K + I+ I+ ++ Sbjct: 62 GTLIDLVMKQHQCNAYGAICRLEQGNTASFSFHGKDLPERDTKRQATSPIEIRRIQPLQN 121 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKI 183 + + Y+ E F L + DS + R KG + + I Sbjct: 122 PALMRYLQERGISPGTAAPYVQEMYYRIGGKPYFALAFKNDSGGYELRNPRFKGSTSKDI 181 Query: 184 IEAGLLIDGDNSATSYDRFRNRLIF-PIRSSRGQVIAFG----GRTLSKGESVKYLNSPE 238 + ++ ++ F + L F IR + ++ L+ + P Sbjct: 182 THIRQQGEPRDTCFVFEGFLDFLSFLTIRQQKSPNMSCTDWQDYVILNSTANTDKALYPL 241 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 H L N A ++IR++ + L G+ D+ Sbjct: 242 AGYGHIHCMLDN-DEAGRKAVEAIRQEYKWRVRDASYLYSGHNDLN 286 >gi|225026719|ref|ZP_03715911.1| hypothetical protein EUBHAL_00971 [Eubacterium hallii DSM 3353] gi|224955980|gb|EEG37189.1| hypothetical protein EUBHAL_00971 [Eubacterium hallii DSM 3353] Length = 863 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 2/201 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R ++ + +++ + ++ + ++AL+ + Sbjct: 318 YRQYIEKDAALERRFQPVMVDEPTVEDTISILRGLKDRYEVYHGVKIADSALVSAAVLSN 377 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD- 554 + +++ I + + + L S + + + + E + +L Sbjct: 378 RYITDRFLPDKAIDLVDEACAMIKTELDSLPADLDEVQRKIMQLEIEEAALKKETDRLSV 437 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ + A + + Q + +R L + E + +I + K Sbjct: 438 ERLENLQKELAELREEFKSKKASWDQEKSAVERVSKLKEEIESLNNEIQIAQRNYDLNKA 497 Query: 615 AIL-ISILHEVHIQIHQIESQ 634 A L L E+ Q+ + E Sbjct: 498 AELQYGKLPELQRQLEEAEES 518 >gi|220909682|ref|YP_002484993.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425] gi|219866293|gb|ACL46632.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425] Length = 811 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 23/103 (22%) Query: 41 ACCPFHDEKTP-SFHCNDSKGFY--YCFSCHVKGDHLSFLSALLGCS----------FIE 87 CCP+HD ++ +F+ ++ G + C +C++ GD +++ + F E Sbjct: 277 GCCPWHDSQSGTAFYVDEVDGIWLWRCPACNIGGDPVAY---RDRLNSGDGHPTGKAFTE 333 Query: 88 SVQRLAAIAGVPL-------PVVDPKIEKKEKIQTDLIRLIEV 123 V+ LA AG+ L + K K++ + E Sbjct: 334 IVEELARKAGLSLLHEAQSKTKISAKNPGKKERVSKRYSANEF 376 >gi|17229128|ref|NP_485676.1| regulatory protein [Nostoc sp. PCC 7120] gi|17135456|dbj|BAB78002.1| regulatory protein [Nostoc sp. PCC 7120] Length = 1381 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 6/225 (2%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 EL I+D+K R ++ D+L +L + + +N Sbjct: 819 PELLSEALAVAREIEDEKYRAEALSSLADKLPELLPEALAAAREIEDEKYRNDALSSLAN 878 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 + S V + K R L P +L E +I+++++ Q L S Sbjct: 879 KLPPELLSEAVAVREIKDEKYRAYILSSLAAKLPELLPEALAAAREIQFESSRAQALRSL 938 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 L I + + + + L+ L ++ L A ++ G + Sbjct: 939 ADKFPELLPEALAAAI--EIQDEEYRAQALRSLADKLPPELLPEVV--AATREIEYGEFR 994 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVT-AKGEAEKTAILISILHEV 624 A L L E ++ ++ + L + EV Sbjct: 995 ASILGSLAVQLPELLPEAVAAAREIEYDAFHSDALSNLANKFPEV 1039 Score = 40.3 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 84/259 (32%), Gaps = 34/259 (13%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI---TEHS 444 + D+ EL I+D+ R +++ D+L +L + + E Sbjct: 1086 YYRAYVLISLADKFPELLPEAVAAARGIQDEYPRSLALRSLADKLPELLPEALAATREIQ 1145 Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH--PAILQEQY 502 G N K P + L ++ ++ + A L +L + P +L E Sbjct: 1146 DDGHNRAYNLSDLADKLPPELLPKALAAAREIQDEYYRANA--LSSLADKLPPELLPEAL 1203 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 A + E + L + + LPE + +++ + A + Sbjct: 1204 A--AAREIQDEEYRA--DVLSNLADKLPELLPEAVAA----------ARKIQDEEYRADV 1249 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620 S + + + A R+ ++ E + ++ + E ++ Sbjct: 1250 LSNLADKLPELLPEAVAAA-----------RKIQDEEYRADVLSNLADKLPELLPEAVAA 1298 Query: 621 LHEVHIQIHQIESQEAMIE 639 + + H+ + ++++ Sbjct: 1299 ARGIQDEKHRAQVLSSLVD 1317 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 28/257 (10%), Positives = 78/257 (30%), Gaps = 27/257 (10%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 EL I+D++ R ++ D+L +L + + ++ Sbjct: 599 PELLPEALVAAREIQDEEFRAQVLGSLADKLPELLPEALATARKTEDESRRARILSSLAV 658 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKLW- 519 + V + +L L++ P +L E +I N L Sbjct: 659 KLPPELLPEAVAAAREIQDEDSRVFVLSILVDKLPELLPEALAAAREIENSYNRRDALIS 718 Query: 520 -----------SFLFSDFVEQKYFLPEEIHQRLCERGFGEL------LKQLDRQVRDAGL 562 + + Q E+ L ++ L ++++ + A + Sbjct: 719 LANKLPPELLPEAVAAAREIQDEANRAEVLGSLSDKLPELLPEALAAAREIEFESSRAYI 778 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 S+ + + + + + + +I +A E + +++ Sbjct: 779 LSSLADKLPELLPEALAATREIQNGYN-----RADILSSLADKLP---PELLSEALAVAR 830 Query: 623 EVHIQIHQIESQEAMIE 639 E+ + ++ E+ ++ + Sbjct: 831 EIEDEKYRAEALSSLAD 847 >gi|295980942|emb|CBJ57190.1| hypothetical protein [Streptococcus pneumoniae] Length = 361 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97 >gi|124514288|gb|EAY55802.1| DnaB helicase [Leptospirillum rubarum] Length = 463 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/185 (11%), Positives = 64/185 (34%), Gaps = 21/185 (11%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 ++ K + E + L +++ + ++ E L + + + +K++ + Sbjct: 2 SPGGKTRAQILKNLPQSLEAEKSFLGSILLNNEVMTEIGDALKEDDFSLDAHRKIYMTMR 61 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGEL------LKQL-------------DRQVRDAGLWS 564 ++ + L ++G+ L +++L +++ G++ Sbjct: 62 EMSEKRVPVDSVTLADALNKKGWSGLTGGPTYIEELSLIVPTAANAKHYANLLKEKGIYR 121 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILH 622 + R+GY+++ + L R+ EI + G+ + L Sbjct: 122 KLILSAEEIARKGYEESEDVEVLLDLAERKILEIGANRTTRGFVKVGDVQYIEAQYKRLE 181 Query: 623 EVHIQ 627 E+ + Sbjct: 182 ELRAR 186 >gi|81300134|ref|YP_400342.1| primary replicative DNA helicase [Synechococcus elongatus PCC 7942] gi|81169015|gb|ABB57355.1| primary replicative DNA helicase [Synechococcus elongatus PCC 7942] Length = 454 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 12/151 (7%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q L L + E A+L +++ P + L+ + N+ + ++ Sbjct: 3 QELRFDILPDRHEPPQNVEAEEAILGSILLDPEAIGRIADVLSPEAFYNSNHRDIYRAAV 62 Query: 524 SDFVEQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + L + G L K +DR V A + +R+ Sbjct: 63 QLHSQGQPTDLTSLTTSLQDAGQLDKVGGQSRLAKLVDRVVTTANVEQYAQLVIDKFLRR 122 Query: 577 GYQQALALYKRF-----RLLSRQKEEIEKQI 602 QA + + L ++ E+++ Sbjct: 123 QLIQAGNSVIQLGYDTTKPLEAVLDQAEQKV 153 >gi|56750237|ref|YP_170938.1| replicative DNA helicase [Synechococcus elongatus PCC 6301] gi|56685196|dbj|BAD78418.1| replicative DNA helicase [Synechococcus elongatus PCC 6301] Length = 453 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 12/151 (7%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q L L + E A+L +++ P + L+ + N+ + ++ Sbjct: 2 QELRFDILPDRHEPPQNVEAEEAILGSILLDPEAIGRIADVLSPEAFYNSNHRDIYRAAV 61 Query: 524 SDFVEQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + L + G L K +DR V A + +R+ Sbjct: 62 QLHSQGQPTDLTSLTTSLQDAGQLDKVGGQSRLAKLVDRVVTTANVEQYAQLVIDKFLRR 121 Query: 577 GYQQALALYKRF-----RLLSRQKEEIEKQI 602 QA + + L ++ E+++ Sbjct: 122 QLIQAGNSVIQLGYDTTKPLEAVLDQAEQKV 152 >gi|221501947|gb|EEE27698.1| regulator of chromosome condensation domain-containing protein, putative [Toxoplasma gondii VEG] Length = 1819 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 29/236 (12%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV---KGKLSKKPS 481 Q +++ L + Q+ + + + + R + S Q +L K K S++ Sbjct: 1188 IQTLQEELDEEAQQSHKDLTQVLQKLSFAEQERAKLAHSLATAQEALQTFQKNKSSQERL 1247 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 REA+ L + EQ +L E + + L VE + E+++R Sbjct: 1248 EREASALRQQLKSQK--SEQAHQLRQAEEAIGEWRDAHAKLQEALVETEEHRKSEVNER- 1304 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L KQ+ + + + + +Q R + +E+E Sbjct: 1305 -QAEVDHLKKQVRQLEEELQQVKDQVDMTSQSTIEAERQ------RRVAAEERVDELEAA 1357 Query: 602 IAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + ++ A E+ + + E+ ++ + + E F Sbjct: 1358 LNELAADFAASKRASTRQKRDLDSMTEEKQRALQEIEELREELQKARDEIGQGEIF 1413 Score = 38.7 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 35/342 (10%), Positives = 97/342 (28%), Gaps = 10/342 (2%) Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 S A Q + + D + A + +++ L Sbjct: 1480 SAHPAPTQACSECKNLTAELLRSAEHRDTMNSQIEALQSDLTAHQNAARDQQVLIHELQM 1539 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAEL 404 V + + C T + Sbjct: 1540 ELGVYKQRQAAELKVVTEQVCAVHTYRIDCSEGLQNFFRWEICYLYRCAVPVEARDGGIG 1599 Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 +L + ++ Y + L++ ++ + + ++ + Sbjct: 1600 FRNLAEVSKWLLSGFVQKNYLEKKVHDLKEAKEESDEKLFSLQEKLTSLKKEEEEHRIRE 1659 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523 RL+ + + + + L L +H + + L D + + + Sbjct: 1660 RLVTAQVREKQCGPLCHTV-DQLFQVLRHHVDLKVSASEDALTDSSGSDGSSEH---AVL 1715 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 ++ + E +H +CE+ LL + L+ T + N +++ +A Sbjct: 1716 AESKAISVWSFEAVHA-ICEKWNIALLVDTELHKLRDRLFDLTRKEN--ELKHQLVEAAD 1772 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + ++ EE+E+++ + + +AE+ ++ +V Sbjct: 1773 HQQTALQARQKLEELEEKLRRT--QMDAERNEKMMQEAQQVR 1812 >gi|237844347|ref|XP_002371471.1| regulator of chromosome condensation domain-containing protein [Toxoplasma gondii ME49] gi|211969135|gb|EEB04331.1| regulator of chromosome condensation domain-containing protein [Toxoplasma gondii ME49] gi|221481252|gb|EEE19649.1| regulator of chromosome condensation domain-containing protein, putative [Toxoplasma gondii GT1] Length = 1858 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 29/236 (12%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL---VKGKLSKKPS 481 Q +++ L + Q+ + + + + R + S Q +L K K S++ Sbjct: 1188 IQTLQEELDEEAQQSHKDLTQVLQKLSFAEQERAKLAHSLATAQEALHTFQKNKSSQERL 1247 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 REA+ L + EQ +L E + + L VE + E+++R Sbjct: 1248 EREASALRQQLKSQK--SEQAHQLRQAEEAIGEWRDAHAKLQEALVETEEHRKSEVNER- 1304 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + L KQ+ + + + + +Q R + +E+E Sbjct: 1305 -QAEVDHLKKQVRQLEEELQQVKDQVDMTSQSTIEAERQ------RRVAAEERVDELEAA 1357 Query: 602 IAQVTAKG----------------EAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + ++ A E+ + + E+ ++ + + E F Sbjct: 1358 LNELAADFAASKRASTRQKRDLDSMTEEKQRALQEIEELREELQKARDEIGQGEIF 1413 >gi|81299898|ref|YP_400106.1| ATPase [Synechococcus elongatus PCC 7942] gi|81168779|gb|ABB57119.1| ATPase [Synechococcus elongatus PCC 7942] Length = 883 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + + + + L Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448 Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 Q R L + + +Q + + + + +++ I Q + K Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 508 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ +++++E A Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532 >gi|317474283|ref|ZP_07933559.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii 1_2_48FAA] gi|316909593|gb|EFV31271.1| hypothetical protein HMPREF1016_00538 [Bacteroides eggerthii 1_2_48FAA] Length = 659 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSA 79 V +Y A CP +K + GFY+CF C G F Sbjct: 13 RKNVGKNYLALCPKCGKKH--LSISRETGFYHCFYAGCDFHGRLKDFWEE 60 >gi|218130758|ref|ZP_03459562.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697] gi|217987102|gb|EEC53433.1| hypothetical protein BACEGG_02349 [Bacteroides eggerthii DSM 20697] Length = 659 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 18/50 (36%), Gaps = 4/50 (8%) Query: 32 TNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF--SCHVKGDHLSFLSA 79 V +Y A CP +K + GFY+CF C G F Sbjct: 13 RKNVGKNYLALCPKCGKKH--LSISRETGFYHCFYAGCDFHGRLKDFWEE 60 >gi|156555121|ref|XP_001604740.1| PREDICTED: similar to CG31045-PA [Nasonia vitripennis] Length = 2157 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 89/275 (32%), Gaps = 15/275 (5%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 +++ ++ +D ++ + + + K + ++ + + + Sbjct: 1477 YKQRYQHAMRELDFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVVGQWKR 1536 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ---SSLVKGKLSKKPSLREAAL 487 R+Q+L + +N ++ Q L + K ++ RE + Sbjct: 1537 RVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMDDLRQEKAQRERLAREKEI 1596 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYFLPEEIHQRLCE 543 + I Q +I L L L E++ ++ L + Sbjct: 1597 --AIAEKFTIEQNLSDARLEIELKEERLHTLSQELEELTFGGKTEEEVAQLKKAKHELEK 1654 Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + E L L QV+ E +I R+ ++ + +R L + K+ Sbjct: 1655 KLKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEM--QQRDEELEDVRGSAMKK 1712 Query: 602 IAQVTAKGEAEKTAIL--ISILHEVHIQIHQIESQ 634 + + A+ E E + HE+ ++ +E Q Sbjct: 1713 VKALEAQLENEHEERTIVLREKHELERRLVALEDQ 1747 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 33/251 (13%), Positives = 87/251 (34%), Gaps = 31/251 (12%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + + +++Q R + + + Q + + ++ AR ++ + Sbjct: 1544 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMDDLRQEKAQRERLAREKEIAIAEKFT 1603 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN------ELQKLWS 520 ++ +L +L L+E L QEL ++ + +L+K Sbjct: 1604 IEQNLSDARLE--IELKEERL-----------HTLSQELEELTFGGKTEEEVAQLKKAKH 1650 Query: 521 FLFSDFVEQKY-FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575 L +Q+ +L E+ L +++Q ++ + + DVR Sbjct: 1651 ELEKKLKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGSAM 1710 Query: 576 ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628 Q ++ ++ R+K E+E+++ + + E+ A + ++ Sbjct: 1711 KKVKALEAQLENEHEERTIVLREKHELERRLVALEDQDRTERAAEAETTQRLKRDLKRTR 1770 Query: 629 HQIESQEAMIE 639 + + M+E Sbjct: 1771 ALLRDAQTMLE 1781 >gi|240256182|ref|NP_195370.5| heat shock protein binding [Arabidopsis thaliana] gi|332661266|gb|AEE86666.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] Length = 1422 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 34/342 (9%), Positives = 103/342 (30%), Gaps = 15/342 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 LL ++ + + + + E + + Sbjct: 528 KHRNLLKPEENKLFTEKPAKQKKELLCEEKTKRIQNQQLDKKTHQKAAETNQECVYDWEQ 587 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 K +L + L + + + + + IK+ +LR Sbjct: 588 NARKLREALGNESTLEVSVELNGNGKKMEMRSQSETKLNEPLKRMEEETRIKEARLREEN 647 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + +R+ + +K + ++ + ++ ++ + K ++ ++E Sbjct: 648 DRR--ERVAVEKAENEKRLKAALEQEEKERKIKEAREKAENERRAVEAREKAEQERKMKE 705 Query: 485 AALLLTLINHPAILQEQYQEL---ADIRYDNNELQKLWSFLFSDFVE-------QKYFLP 534 L + +++ + + + +++ + E +K L Sbjct: 706 QQELELQLK--EAFEKEEENRRMREAFALEQEKERRIKEAREKEENERRIKEAREKAELE 763 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + +K+ + + E + + +R +R+ Sbjct: 764 QRLKATLEQEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETRE 823 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ-IESQE 635 KEE +K++ + E EK I E+ ++ + +E +E Sbjct: 824 KEENKKKLREAIELEEKEKRLIEAFERAEIERRLKEDLEQEE 865 >gi|218281866|ref|ZP_03488205.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989] gi|218217155|gb|EEC90693.1| hypothetical protein EUBIFOR_00773 [Eubacterium biforme DSM 3989] gi|291540554|emb|CBL13665.1| KaiC [Roseburia intestinalis XB6B4] gi|295110770|emb|CBL24723.1| KaiC. [Ruminococcus obeum A2-162] Length = 638 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 52/185 (28%), Gaps = 32/185 (17%) Query: 1 MNYPRDFIKDLLI-HIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 M Y + I + + + + Q + HD S Sbjct: 4 MQYTEEQI--IRANQTDLVSFLSAQGEQLGKSGKEYRWKK-------HD------SVTVS 48 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG------VPLPVVDPKIEKKEK 112 +Y S G + F+ +F E+V+ L G P P D ++ +KE+ Sbjct: 49 GNRWYRHSQGRGGYPVDFVMEFYNATFPEAVKMLTGEEGEGRNSTCPAPSPDFRLPEKEE 108 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 +IR + +K + G + + + + + Sbjct: 109 NNDRIIRYLTE---------NRGIEKNMVEEWIGSGDIYEEKKHHNVVFVGRDADGIPRY 159 Query: 173 LRQKG 177 +G Sbjct: 160 AHCRG 164 >gi|124515128|gb|EAY56639.1| probable DNA helicase [Leptospirillum rubarum] gi|206603709|gb|EDZ40189.1| Probable DNA helicase [Leptospirillum sp. Group II '5-way CG'] Length = 455 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L+ L+ P +L++ + + +++ + ++ P + RL + Sbjct: 23 EKNLIWCLLREPGLLRDDSLSFSVEDFHFAPHRRIIRAIIDLDRDEITVDPGMVRNRLED 82 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-KEEIEKQI 602 L L +W++ + A + A R + R+ + + ++ Sbjct: 83 PSDRAYLDSL-----IDDMWASPSNA----------KFYAEKLREVAVRRRALFDAD-RL 126 Query: 603 AQVTAKGEAEKTAILISIL 621 + + G E A + L Sbjct: 127 TRAASSGVPEDIAKVYGEL 145 >gi|187478660|ref|YP_786684.1| replicative DNA helicase [Bordetella avium 197N] gi|115423246|emb|CAJ49779.1| replicative DNA helicase [Bordetella avium 197N] Length = 457 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 15/196 (7%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S L ++ E ++L L+ A L + + ++ + +W + Sbjct: 4 PADSQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLGEEDFYRHDHRIIWQHIARL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV----- 574 + +++ L G E L L A E Sbjct: 64 IGLARPADVITVNESLVSAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVAERATLRKL 123 Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQ 630 A AL + + + +E E ++ ++ +G + +L +V +I + Sbjct: 124 VTIADEISAAALNPQGKEARQLLDEAESKVFKIAQEGARGSGGFQEIQPLLTQVVERIDE 183 Query: 631 IESQEAMIEGFGKMSG 646 + +E+ + G +G Sbjct: 184 LYHRESESDVTGVPTG 199 >gi|313115259|ref|ZP_07800738.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622428|gb|EFQ05904.1| conserved domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84 >gi|283796494|ref|ZP_06345647.1| toprim domain protein [Clostridium sp. M62/1] gi|291075908|gb|EFE13272.1| toprim domain protein [Clostridium sp. M62/1] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84 >gi|153810265|ref|ZP_01962933.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174] gi|153813917|ref|ZP_01966585.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC 27756] gi|145848313|gb|EDK25231.1| hypothetical protein RUMTOR_00124 [Ruminococcus torques ATCC 27756] gi|149833444|gb|EDM88525.1| hypothetical protein RUMOBE_00646 [Ruminococcus obeum ATCC 29174] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQMLTGENG 84 >gi|298705512|emb|CBJ28779.1| Cellulose synthase (UDP-forming), family GT2 [Ectocarpus siliculosus] Length = 2018 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 41/363 (11%), Positives = 100/363 (27%), Gaps = 28/363 (7%) Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 A + L L R + + + A +V Sbjct: 64 AHHDEARAVLAKKLQVENARTGRVIKTNLGKYANPKLAQGAKAAVLASVVEYLNGEEFVR 123 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 + PD ++ ++ E Sbjct: 124 IVAAPLNYQSPDFVRAMEAESGVMEISFSPTNARQRSMASLPVGAPDYDSKMALLQEQKA 183 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 ++++ LR Q + +R + + + R + + ++ Sbjct: 184 IEQQQRMEEEALR---RQEMLERENKAAMEQDAADALAMANAANQRRLEEMQRQQDEELE 240 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR------------YDNNELQ 516 + ++ REA L + H L E+ R EL+ Sbjct: 241 EQRRQLDEHQEHLRREAELAR--MRHKEELDLHRAEMEREREAVEARQAEAKRLQEEELE 298 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEAN---- 570 K + E +E+ + E R EL K + + G+ ++ +++ Sbjct: 299 KQRQEMRRKHEEDMELQRQELARHAEEVARHKAELAKHNEGVGLENGVLTSQSDSPGVVH 358 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQ 627 + ++AL +R + +E+ +++ + AK + E + + + L + ++ Sbjct: 359 HQQEARLEKEALEEMRRRE--NEAEEDERRRLQEAVAKHQEETRLEAERVKAELEALKLE 416 Query: 628 IHQ 630 Sbjct: 417 REA 419 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 25/242 (10%), Positives = 69/242 (28%), Gaps = 15/242 (6%) Query: 411 CINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 D+ + + + ++ + + + + K + +L Q Sbjct: 44 LNAKHLDEIKKAEHLKKKLKAHHDEARAVLAKKLQVENARTGRVIKTNLGKYANPKLAQG 103 Query: 470 SLVKGKLSKKPSLREAALLLTL---INH--PAILQEQYQELADIRYDNNELQKLWSFLFS 524 + S L + + +N+ P ++ E + + + S Sbjct: 104 AKAAVLASVVEYLNGEEFVRIVAAPLNYQSPDFVRAMEAESGVMEISFSPTNARQRSMAS 163 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 V + + L E+ E ++++ + ++ A+A Sbjct: 164 LPVGAPDYDSK--MALLQEQKAIEQQQRMEEEALRRQEMLERENKAAMEQDAADALAMAN 221 Query: 585 YKRFRLLSR-------QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 R L + EE +Q+ + E + E+ + ++E + Sbjct: 222 AANQRRLEEMQRQQDEELEEQRRQLDEHQEHLRREAELARMRHKEELDLHRAEMEREREA 281 Query: 638 IE 639 +E Sbjct: 282 VE 283 Score = 38.3 bits (87), Expect = 3.7, Method: Composition-based stats. Identities = 10/98 (10%), Positives = 30/98 (30%), Gaps = 3/98 (3%) Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 QR + E +QLD + + + + + ++ E Sbjct: 231 MQRQQDEELEEQRRQLDEHQEHLRREAELARMRHKEELD--LHRAEMEREREAVEARQAE 288 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + ++ + + + ++ E+ Q ++E Sbjct: 289 AK-RLQEEELEKQRQEMRRKHEEDMELQRQELARHAEE 325 >gi|116334960|ref|YP_802455.1| putative DNA primase [Candidatus Carsonella ruddii PV] gi|116235241|dbj|BAF35089.1| putative DNA primase [Candidatus Carsonella ruddii PV] Length = 257 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGD-HLSFL 77 CPFH++ S FY C+ C +G+ FL Sbjct: 5 CPFHNDTNASLSI--KNNFYICYGCKKRGNTTFKFL 38 >gi|33593747|ref|NP_881391.1| replicative DNA helicase [Bordetella pertussis Tohama I] gi|33597060|ref|NP_884703.1| replicative DNA helicase [Bordetella parapertussis 12822] gi|33600904|ref|NP_888464.1| replicative DNA helicase [Bordetella bronchiseptica RB50] gi|33563820|emb|CAE43064.1| DNA helicase [Bordetella pertussis Tohama I] gi|33566511|emb|CAE37767.1| DNA helicase [Bordetella parapertussis] gi|33568504|emb|CAE32416.1| DNA helicase [Bordetella bronchiseptica RB50] gi|332383149|gb|AEE67996.1| replicative DNA helicase [Bordetella pertussis CS] Length = 457 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 15/196 (7%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L ++ E ++L L+ A L + + ++ + +W + Sbjct: 4 PADPQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV----- 574 + +++ L G E L L A E Sbjct: 64 IGLARPADVITVNESLASAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKL 123 Query: 575 --RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630 A AL + + + +E E ++ ++ +GE + + +L +V +I + Sbjct: 124 VSIADEISAAALNPQGKEARQLLDEAESKVFKIAQEGERGSAGFQEIQPLLTQVVERIDE 183 Query: 631 IESQEAMIEGFGKMSG 646 + +E+ + G +G Sbjct: 184 LYHRESESDVTGVPTG 199 >gi|268680215|ref|YP_003304646.1| replicative DNA helicase [Sulfurospirillum deleyianum DSM 6946] gi|268618246|gb|ACZ12611.1| replicative DNA helicase [Sulfurospirillum deleyianum DSM 6946] Length = 476 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 61/158 (38%), Gaps = 14/158 (8%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L +++ +PA ++ ++ + + ++ + + E E I ++L + Sbjct: 10 ERSVLSSILFNPATFEDVAALISAKDFYLPSHRYIFEAMEACQREDLPIDEEFIKKKLNQ 69 Query: 544 R---GFGELLKQLD-----------RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + +L+ L ++++ + + ++ L + Sbjct: 70 QSRFDEDAMLEILSTNPLPTTKAYVEEIKEKAIKRELVQLTSDIKEIAVEKDLPSTEVID 129 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 L+ ++ +I ++ + + E T I+ +HE+ + Sbjct: 130 LVQQKLYQITQENSSREFRESPEMTHATIAHIHEMKKR 167 >gi|93141242|sp|P53533|CLPB1_SYNE7 RecName: Full=Chaperone protein ClpB 1 Length = 874 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/204 (11%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 321 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + + + + L Sbjct: 381 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 439 Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 Q R L + + +Q + + + + +++ I Q + K Sbjct: 440 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLIQQAERDYDLNK 499 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ +++++E A Sbjct: 500 AAELKYGKLTELQRKLNEMEGGLA 523 >gi|307720262|ref|YP_003891402.1| primary replicative DNA helicase [Sulfurimonas autotrophica DSM 16294] gi|306978355|gb|ADN08390.1| primary replicative DNA helicase [Sulfurimonas autotrophica DSM 16294] Length = 481 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L +++ P+ E EL+ + Q ++ + + + + E I + L + Sbjct: 11 ERSVLSSIVFEPSQFDELSVELSKDDFYLPAHQDIFQAMLTLLQKDQPIDEEFIKKELIK 70 Query: 544 RGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------FR 589 ++L ++ + + E +++ KR Sbjct: 71 AKKFDEQVLLEILSANPISNTKAYVDEIKDKSLKRHLLTLTTEIKRVTVEEELPSAEVVD 130 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 ++ ++ EI + K + T + + E+ + Sbjct: 131 IVEKKLYEITQDNQTSDFKDSPKMTFDTMEYIKEMKAR 168 >gi|330991477|ref|ZP_08315428.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1] gi|329761496|gb|EGG77989.1| Chaperone protein ClpB [Gluconacetobacter sp. SXCC-1] Length = 867 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 5/214 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++ + +++ K +L + + AL+ Sbjct: 320 YRKYIEKDAALARRFQPVYVGEPTVADTISILRGIKEKYELHHGIRISDGALVAAATLSN 379 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E I ++ + R Sbjct: 380 RYITDRFLPDKAIDLVDEAASRLRMQIDSKPEELDELDRRLIQLKIEREAIRKEDDAASR 439 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKT 614 + + D A L + ++I I KG+ + Sbjct: 440 ERLVKLEAELSELQEKSDALTAAWHAEKDRVNAVQKLQEEMDQIRSDIEIAQRKGDLARA 499 Query: 615 AILI-SILHEVHIQIHQIESQEA--MIEGFGKMS 645 + L+ S L ++ QI + + +EA + +G G +S Sbjct: 500 SELMYSRLPQLQAQIAKAQ-EEADQISKGDGMVS 532 >gi|25011390|ref|NP_735785.1| hypothetical protein gbs1348 [Streptococcus agalactiae NEM316] gi|24412928|emb|CAD47007.1| unknown [Streptococcus agalactiae NEM316] Length = 361 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+++ I ++ + Y P HD SF + FS Sbjct: 4 IEEVKQTA-ILDVAAR---LGYSFRRLSGQIYEH--PEHD----SFRIFADTNTFKWFSR 53 Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92 ++GD + F+ + G SF E++ L Sbjct: 54 DIQGDVIDFVQLVAGVSFKEALSYL 78 >gi|302877147|ref|YP_003845780.1| replicative DNA helicase [Clostridium cellulovorans 743B] gi|307687842|ref|ZP_07630288.1| replicative DNA helicase [Clostridium cellulovorans 743B] gi|302580004|gb|ADL54016.1| replicative DNA helicase [Clostridium cellulovorans 743B] Length = 443 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 15/161 (9%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++IN E QEL+ + + +++ + F Sbjct: 6 RTLPQNIEAEQSVLASMINDKEATAEAAQELSAEDFYRESHKVIFTGIVELFFRDIPIDM 65 Query: 535 EEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-- 582 + + L L + + ++ + Sbjct: 66 ITLIEHLKSTDKLEASGGISYISTLSTSIASTANVHSYIKIVKDKAVLRRLIKVANEITE 125 Query: 583 ALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISI 620 Y + +++ + EK+ IAQ + + E A ++S Sbjct: 126 DSYTKQNDVAKVMDSAEKKIFDIAQNKTRNDYEPIASVLSR 166 >gi|254881367|ref|ZP_05254077.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|254834160|gb|EET14469.1| DNA primase [Bacteroides sp. 4_3_47FAA] Length = 295 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 YW P +E+TPSF ND +Y F GD + Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65 >gi|153811442|ref|ZP_01964110.1| hypothetical protein RUMOBE_01834 [Ruminococcus obeum ATCC 29174] gi|149832569|gb|EDM87653.1| hypothetical protein RUMOBE_01834 [Ruminococcus obeum ATCC 29174] Length = 421 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 62/406 (15%), Positives = 112/406 (27%), Gaps = 54/406 (13%) Query: 43 CPFHDEKTP--SFHCNDS---KGFYYCFSCHVKGDHLSFLSALLGC----SFIESVQRLA 93 CPF + SF + + K Y+C+ C G+ L+ + L G + E+ + + Sbjct: 33 CPFCGDLRGKCSFCIHKNGELKNVYHCYHCGASGNMLTLYAELSGIYGRNRYKEAYREIK 92 Query: 94 AIAGVPLPVVDPKIEKKE--------KIQTDLIR--------LIEVATDFFHHSLKNARD 137 + + K + L + + F LK Sbjct: 93 QALSFSGTDKSQQSTTRNGFVSIVPKKKRISLTEEEWDYRDHVYKEMLTF--LKLKETHR 150 Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSAT 197 + L E L ++ ++ L +KGF + + + DGD A Sbjct: 151 RNLLLRGLTLNEVRQMEERGFLSTDEENSVAIARKLLKKGFRLDGVPGFFINRDGDWEAA 210 Query: 198 SYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNY 257 Y + L P+R + ++I F R + KYL + L Sbjct: 211 FYKKNNGYL-CPVRDGKERIIGFQIRLDVPLKERKYLWFTSSGLE------------KGT 257 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMD---VLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS 314 S + + + EG + V E LR L + Sbjct: 258 SSGSPAGMFGKIKDGTVYVTEGILKAEIAWMCTGNPYIGVPGVSNHKGLETVLRKLKEQG 317 Query: 315 -PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD-----SFIRCYGK 368 R+ C+D D + G + GE P IR Sbjct: 318 LKRVYECYDMDKMMELSCKHDEKSACRQCEHGIYLYH-----GECPKKRRKRDMIRKGCI 372 Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +E ++ + W + + + + N Sbjct: 373 KLYEICEELNVSCKRVTWDTDASGTWMEHYKGVDDWILRKEEKGNW 418 >gi|37525016|ref|NP_928360.1| hypothetical protein plu1031 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784442|emb|CAE13326.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 459 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/162 (12%), Positives = 49/162 (30%), Gaps = 8/162 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + ++++ + + F + + L Sbjct: 19 AEQAVLGGLMLDNDRWDEIVPLIHADDFFLPAHRRIYGAVATMFAANLPVDVLTLSEILE 78 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E LKQ+ A L T + QA + ++ +L + + Sbjct: 79 Q---KEQLKQVGGFAYLAELGKNTPSTANIVAYAEIVQAKSRLRQLIMLGNEMSD----- 130 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 + + + + + ++ EG G + Sbjct: 131 QAGHPRADFTDITEMAEQRLYTLSEQKAVRQDISLKEGLGLL 172 >gi|119026482|ref|YP_910327.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703] gi|118766066|dbj|BAF40245.1| chaperone clpB [Bifidobacterium adolescentis ATCC 15703] Length = 905 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 2/143 (1%) Query: 496 AILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++ E L ++ E+ +L + +E+ Y L + + E+ EL Sbjct: 394 DLVDEAAAHLRMELDSSPEEIDELRRQVDRLKMEKSYLLGNPKNDKATEKAEAELDDSAK 453 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ D A + ++ + + R L ++ +E+ Q + +G+ K+ Sbjct: 454 DRLADLNQEIADKSEKLNGLKARWDAEKNGHNRIGDLRKKLDELRTQAEKYEREGDLAKS 513 Query: 615 AIL-ISILHEVHIQIHQIESQEA 636 + + + + +I Q E EA Sbjct: 514 SAINYGEIPAIQKEIAQAEKNEA 536 >gi|323703286|ref|ZP_08114937.1| replicative DNA helicase [Desulfotomaculum nigrificans DSM 574] gi|323531751|gb|EGB21639.1| replicative DNA helicase [Desulfotomaculum nigrificans DSM 574] Length = 440 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 51/160 (31%), Gaps = 11/160 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ + + + L + + ++ + Sbjct: 4 RVPPQNIDAEQSVLGAMLLEREAIFKVMEFLKPDDFYKESHRIIYEAILELAESGSPVDL 63 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L ++G E + + A L A + Y + + + L+R Sbjct: 64 ITVTDLLRDKGDLEKVGGITYVATLANLVPTAANA------EYYARIVE----EKALTRA 113 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + +IA +G E L+ +++ Q S Sbjct: 114 LISVSTRIASRGYEG-VESPEELLDEAERSILELSQRRST 152 >gi|322385345|ref|ZP_08058990.1| hypothetical protein HMPREF9422_0355 [Streptococcus cristatus ATCC 51100] gi|321270604|gb|EFX53519.1| hypothetical protein HMPREF9422_0355 [Streptococcus cristatus ATCC 51100] Length = 361 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97 >gi|110835729|ref|NP_034116.3| protein CASP isoform a [Mus musculus] Length = 1426 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 218 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 339 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384 >gi|217077421|ref|YP_002335139.1| replicative DNA helicase [Thermosipho africanus TCF52B] gi|217037276|gb|ACJ75798.1| replicative DNA helicase [Thermosipho africanus TCF52B] Length = 445 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 44/148 (29%), Gaps = 9/148 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E A+L +++ P ++ ++ + + +++ + + E Sbjct: 2 KNAPHSIEAEQAILGSILIDPETIENIISIVSSRDFFDPRHAEIFKAIEELYDEGIPIDV 61 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I RL +G +L+ + + + Y Q + R L Sbjct: 62 ISICDRLKTKG------KLEMVGGEIYVAQLADIVPTSAHAEMYAQIVRDKSVLRAL--- 112 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH 622 K + + + + + Sbjct: 113 INAASKVVEDAMSDRDVDDILDNAERVI 140 >gi|149922004|ref|ZP_01910446.1| hypothetical protein PPSIR1_18307 [Plesiocystis pacifica SIR-1] gi|149817169|gb|EDM76649.1| hypothetical protein PPSIR1_18307 [Plesiocystis pacifica SIR-1] Length = 640 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 53/154 (34%), Gaps = 20/154 (12%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 EA L L P +L E +ELA+ +++ +Q++ L E+ +E+ +R Sbjct: 259 EAQLESELEEDPWLLSEGMRELAEDLREHDIMQEVAEALAKSDAEEVEKELQELMERAEA 318 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI- 602 G E +R+ + + + E+ E+++ Sbjct: 319 EGGD------------------LKEELDEALREMERSLSRTARENTGTEKAMEQAEREMK 360 Query: 603 -AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + E+ + E ++ + +E Sbjct: 361 RQEKNPAEDPEEQEREMQRKKERLEELRRQHERE 394 >gi|60688551|gb|AAH90847.1| Cut-like homeobox 1 [Mus musculus] Length = 1426 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 100/286 (34%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q ++ ++ ++ + + KL + + L T + Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQT--LQTALEKT 218 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 339 EQQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 384 >gi|289706685|ref|ZP_06503033.1| replicative DNA helicase [Micrococcus luteus SK58] gi|289556605|gb|EFD49948.1| replicative DNA helicase [Micrococcus luteus SK58] Length = 463 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 22/176 (12%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534 L + E ++L ++ + + + L + + ++ + + + Sbjct: 21 LPPQDLEAERSVLGGMMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAV 80 Query: 535 --EEIH---QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ Q L G +L +L + V A S E ++ + + Sbjct: 81 TVADLLNKRQELSRVGGPAVLHELIQSVPTAANASFYAEIVAEKA--VLRRLVTAGTKIT 138 Query: 590 LL--------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L E + +I A+ + + A ++ + +I +Q Sbjct: 139 QLGYQGDGEVEEIVNEAQSEIYKVAENRQSEDYVRLAEIMEHAVD---EIEAAGNQ 191 >gi|229495814|ref|ZP_04389542.1| putative mobilizable transposon, excision protein [Porphyromonas endodontalis ATCC 35406] gi|229317388|gb|EEN83293.1| putative mobilizable transposon, excision protein [Porphyromonas endodontalis ATCC 35406] Length = 281 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 IPI++ + + K Y A P+ E+TPSF + +K ++ F GD Sbjct: 9 IPIADFLSA-MGIHPTKQKGNALWYSA--PYRTERTPSFKVDTAKNVWFDFGTGKVGDIF 65 Query: 75 S 75 Sbjct: 66 D 66 >gi|86609958|ref|YP_478720.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558500|gb|ABD03457.1| ATP-dependent chaperone protein ClpB [Synechococcus sp. JA-2-3B'a(2-13)] Length = 880 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 81/208 (38%), Gaps = 12/208 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R ++ + + +++ + +L + ++AL+ + Sbjct: 321 YRKHIEKDAALERRFQPVYVDQPSVEDTISILRGLKERYELHHGVKISDSALVAAAVLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554 + E++ I + KL + S K +EI +R+ + EL LK+ D Sbjct: 381 RYISERFLPDKAIDLVDEAAAKLKMEITS-----KPVELDEIDRRIMQLQMEELSLKKED 435 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L E + RQ A +R + L +++ ++ QI Q K Sbjct: 436 DAASRDRLSKIEQELANLTERQRELNARWQFEKEAIERLQSLKAERDAVKLQIEQAEQKY 495 Query: 610 EAEKTAIL-ISILHEVHIQIHQIESQEA 636 + + A L L E+ QI + E+ A Sbjct: 496 DLNRAAELKYGKLMELERQIQEQEAHLA 523 >gi|307566068|ref|ZP_07628526.1| mobilizable transposon, excision family protein [Prevotella amnii CRIS 21A-A] gi|307345256|gb|EFN90635.1| mobilizable transposon, excision family protein [Prevotella amnii CRIS 21A-A] Length = 303 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 8/43 (18%), Positives = 13/43 (30%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 + P E+ SF N +Y F G+ + Sbjct: 24 KQYGVNLMYLSPLRTERHASFKVNTELNLWYDFGIGKGGNIID 66 >gi|260905016|ref|ZP_05913338.1| primary replicative DNA helicase [Brevibacterium linens BL2] Length = 445 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 56/156 (35%), Gaps = 13/156 (8%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + + + + + + ++ + + + Sbjct: 11 RTPPQDVEAEQSVLGAMLLSKDAIADCVESMTGDDFYKPAHETIYEAVLDLYSRGEPADS 70 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L + G L ++ L S+ A GY A+ R + + R+ Sbjct: 71 VTVANYLTKTGD---LSRVGGAAYLHTLISSVPTA----ANAGYYAAI---VREQAVLRR 120 Query: 595 KEEIEKQIAQV--TAKGEAEK-TAILISILHEVHIQ 627 E +I Q+ A+G+ ++ + +++V + Sbjct: 121 LVEAGTRIVQMGYDAEGDTDEVVNSAQAEIYQVTER 156 >gi|56477755|ref|YP_159344.1| replicative DNA helicase protein [Aromatoleum aromaticum EbN1] gi|56313798|emb|CAI08443.1| replicative DNA helicase protein [Aromatoleum aromaticum EbN1] Length = 466 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/160 (10%), Positives = 51/160 (31%), Gaps = 12/160 (7%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 ++ S + KL E +L+ ++ A + + ++ + ++ ++ Sbjct: 4 SKRRFSDSSSDPQISAIKLPPHSLEAEQSLIGGILLDNAAWERIADLVNEVDFYRDDHRR 63 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 ++ + K + + L + G E L A T A + Sbjct: 64 IYRHISRLIDLGKPADVVTVFESLEKNGETEQAGGLAYLAEVAN---NTPSAANIRRYAE 120 Query: 578 YQQALALYKRFRLLSRQK---------EEIEKQIAQVTAK 608 + A+ ++ + + ++ + + + AK Sbjct: 121 IVRERAILRKMVAVGDEIAASALSASGKDAKTLLDEAEAK 160 >gi|319792779|ref|YP_004154419.1| ATP-dependent chaperone clpb [Variovorax paradoxus EPS] gi|315595242|gb|ADU36308.1| ATP-dependent chaperone ClpB [Variovorax paradoxus EPS] Length = 873 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 72/203 (35%), Gaps = 2/203 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++K + +++ K ++ + + A++ Sbjct: 317 YRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSD 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554 + +++ I + K+ + S I ++ + Sbjct: 377 RYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEASQ 436 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ A + I D + +Q A + + + E+++ +I + KG+ K Sbjct: 437 KRFGLIEDEIAKLQKEIADYDEIWQAEKAQAQGSAHIREEIEKLKTEIKEWERKGDFNKL 496 Query: 615 AIL-ISILHEVHIQIHQIESQEA 636 A L L + ++ + E+ EA Sbjct: 497 AELQYGQLPALEKRLKEAEASEA 519 >gi|294788992|ref|ZP_06754232.1| replicative DNA helicase [Simonsiella muelleri ATCC 29453] gi|294483094|gb|EFG30781.1| replicative DNA helicase [Simonsiella muelleri ATCC 29453] Length = 467 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 25/174 (14%), Positives = 58/174 (33%), Gaps = 12/174 (6%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + E +++ LI + ++D + +E + ++ + Sbjct: 9 DPEIRALSTPPHSLEAEQSVIGGLILENSAWDRIADVVSDDDFYRHEHRLIFRAIAILIN 68 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + ++L + +L++ + L + + Y + + R Sbjct: 69 ENRPADVVTVQEQLAQN------DKLEQVGGFSYLVTLVQNTPSAANIRRYAEIV----R 118 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R + RQ E+ QIA+ + + L+ QI ES +GF Sbjct: 119 ERSIIRQLAEVGTQIARNAYNPQGKTAEQLLDEAENQVFQIA--ESTAKSKQGF 170 >gi|226940649|ref|YP_002795723.1| inner membrane protein [Laribacter hongkongensis HLHK9] gi|226715576|gb|ACO74714.1| inner membrane protein [Laribacter hongkongensis HLHK9] Length = 595 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 52 SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 SF N + G + F+ GD +S ++ L G E+ + LA + Sbjct: 49 SFSVNANTGVWQDFATDDKGGDVVSLVAYLQGIGNGEACKLLAERYRM 96 >gi|203454751|ref|YP_002225067.1| gp188 [Mycobacterium phage Myrna] gi|197311799|gb|ACH62157.1| gp188 [Mycobacterium phage Myrna] Length = 381 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 60/377 (15%), Positives = 110/377 (29%), Gaps = 73/377 (19%) Query: 44 PFH--DEKTPSFHCNDSKGFYYCFS-----CHVKG-DHLSFLSALLGCSFIESVQRLAAI 95 P H ++ PS CN +K + C+S + G D L + + G Sbjct: 60 PHHANGDQNPSAACNLNKKTWVCYSYVDPETNKSGYDMLHLIMKMEG------------- 106 Query: 96 AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155 KE ++++ F + Sbjct: 107 -------------AKEPR-----DVMDLVRGFLE------GGTAEPNQFMAKLSALVVAP 142 Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215 + P R +L Q G++ I+E G+ +D + I G Sbjct: 143 ESEKTGPPVVRGLSERNLAQWGYTHPYIVERGIDLDTASRLQIGYDPDENRITIPHFWNG 202 Query: 216 QVIAFGGRTLS------KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRN 269 +++ + R + G + F K + LY A Sbjct: 203 RLVGWQKRAIPNRPGEWPGTVPAVPKYRSSPGFPKSETLYRLAEAR-------------- 248 Query: 270 SSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLR 329 S +++VE V+ GV V ++ G +T++QL LL + +V D D Sbjct: 249 VSGRVVVVESPFSVIKAEALGVPGVTATFGAKITDHQLDLLKGVDDLVVWMDDDDAGRAA 308 Query: 330 AAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRE 389 +L + V V G+D + + I ++ P D L + + Sbjct: 309 ERRLVANLYRH-----SGVRVVTPDDGKDLGDYT---SASDILTKIDQATPGYDKLVQYD 360 Query: 390 TENRSFNTPDERAELEI 406 E + + Sbjct: 361 REKAEWARRSRVSAPSR 377 >gi|160945798|ref|ZP_02093024.1| hypothetical protein FAEPRAM212_03331 [Faecalibacterium prausnitzii M21/2] gi|158443529|gb|EDP20534.1| hypothetical protein FAEPRAM212_03331 [Faecalibacterium prausnitzii M21/2] Length = 173 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C GD + F +AL G ++ +LA G+ Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLGKKDAAVQLAQDFGLSYE 46 >gi|118101974|ref|XP_417909.2| PREDICTED: similar to centrosomal protein 164kDa [Gallus gallus] Length = 1131 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 33/299 (11%), Positives = 92/299 (30%), Gaps = 43/299 (14%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + +E L V ++ + E + + + I+ +K Sbjct: 419 QELALQKLREEWESLQVMEKGSMERKKQLALEKMKLEMEEAQQK---------ETIRLKK 469 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + +++RL+ +K E + + + S L+ K + Sbjct: 470 EKEQFLRELKERLEMEKKKAAEELEKQFATELQQLKSA---AEEKHRKLSELMSEKRHEV 526 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEE 536 E + H +L + + + +L+ L + ++ + Sbjct: 527 EKDHERKMARMKEEHQEVLARIQDQYEEEE--RKQRAELFEGLRGELALLRQRHEVEVKA 584 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQK 595 + L ER L L + + +E + + +++ L + L R+K Sbjct: 585 LQAELDER-----LTALQHRHGEKERRLQDSENELEIRAKNIKARSVQLLSQEESLRRKK 639 Query: 596 EEIEKQIAQVTAKGEA-----------------EKTAILISI---LHEVHIQIHQIESQ 634 +++ + + + + + + + L E+ Q ++E+Q Sbjct: 640 QQLLDEDRRTERERDEAALASQLRLEENRKEHSDLLESIWQLRKALEELQDQKAELEAQ 698 >gi|332076320|gb|EGI86786.1| DNA primase [Streptococcus pneumoniae GA41301] Length = 361 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAIQEKRERPFYY 97 >gi|229541402|ref|ZP_04430462.1| ATP-dependent chaperone ClpB [Bacillus coagulans 36D1] gi|229325822|gb|EEN91497.1| ATP-dependent chaperone ClpB [Bacillus coagulans 36D1] Length = 861 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 26/215 (12%), Positives = 73/215 (33%), Gaps = 6/215 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R +++ + +++ + ++ + + AL+ Sbjct: 318 YRQYIEKDAALERRFQQVLVQEPDVEDTISILRGLRERFEIHHGVRIHDKALVAAATLSN 377 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + + + S E + + E + + + Sbjct: 378 RYITDRFLPDKAIDLVDEACANIRVEMDSMPTELDEVTRRVMQLEIEEAALQKETDEASK 437 Query: 556 QVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + +R +Q A ++ + E+ + + + + + K Sbjct: 438 ARLGILQKELANLKEEANRMRAKWQAEKAELQKVQEKRELLEKYRRDLEEAENRYDLNKA 497 Query: 615 AIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 A L + V ++ Q+E Q A EG SGR+ Sbjct: 498 AELRHGRIPAVEKELKQLEQQMAEKEG----SGRI 528 >gi|323484977|ref|ZP_08090331.1| TnpY protein [Clostridium symbiosum WAL-14163] gi|323401719|gb|EGA94063.1| TnpY protein [Clostridium symbiosum WAL-14163] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|295115236|emb|CBL36083.1| DNA primase (bacterial type) [butyrate-producing bacterium SM4/1] Length = 596 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|291562190|emb|CBL41006.1| DNA primase (bacterial type) [butyrate-producing bacterium SS3/4] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|291549011|emb|CBL25273.1| hypothetical protein RTO_05210 [Ruminococcus torques L2-14] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|291545588|emb|CBL18696.1| DNA primase (bacterial type) [Ruminococcus sp. SR1/5] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|291535039|emb|CBL08151.1| DNA primase (bacterial type) [Roseburia intestinalis M50/1] Length = 623 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|33323572|gb|AAQ07542.1|AF503408_66 Ban [Enterobacteria phage P7] Length = 454 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + + ++++S + K + + L Sbjct: 15 AEQAILGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 74 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 75 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 125 AEAGYAQDGRGSNELL 140 >gi|218262155|ref|ZP_03476714.1| hypothetical protein PRABACTJOHN_02387 [Parabacteroides johnsonii DSM 18315] gi|218223561|gb|EEC96211.1| hypothetical protein PRABACTJOHN_02387 [Parabacteroides johnsonii DSM 18315] Length = 326 Score = 49.9 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 82/254 (32%), Gaps = 13/254 (5%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA-------I 95 P ++ TPSF + + + + G + + C+ ++ RL Sbjct: 34 SPLREDNTPSFKVDYNANLWCDYGTGEGGTLIDLVMKQHQCNAYGAICRLEQGNTASFSF 93 Query: 96 AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155 G LP D K + I+ I+ ++ + + Y+ E Sbjct: 94 HGKDLPERDTKRQAASPIEIRRIQPLQNPALMRYLQERGISPGTAAPYVQEMYYRIGGKP 153 Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF-PIRSSR 214 F L + DS + R KG + + I + ++ ++ F + L F IR + Sbjct: 154 YFALAFRNDSGGYELRNPRFKGSTSKDITHIRQQGEPRDTCFVFEGFLDFLSFLTIRQQK 213 Query: 215 GQVIAFG----GRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS 270 + L+ + P H L N A ++IR++ + Sbjct: 214 SPDMPCTDWQDYVILNSTANTDKALYPLAGYGHIHCMLDN-DEAGRKAVEAIRQEYKWRV 272 Query: 271 SSFIILVEGYMDVL 284 L G+ D+ Sbjct: 273 RDASYLYSGHNDLN 286 >gi|92115928|ref|YP_575657.1| hypothetical protein Nham_0301 [Nitrobacter hamburgensis X14] gi|91798822|gb|ABE61197.1| hypothetical protein Nham_0301 [Nitrobacter hamburgensis X14] Length = 216 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 20/101 (19%) Query: 7 FIK--DLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHD-EKTPSFHCNDSKGFY 62 F+ ++ + I + V W CP H E+ S +KG + Sbjct: 3 FVDFAEIRERLSIEDAAEMLPVKWKSEGQQLRAD-----CPVHGGER--SLIITPAKGLF 55 Query: 63 YCFSC---HVKGDHLSF---LSALLGCSFIESVQRLAAIAG 97 C + GD ++ + E+ Q LA G Sbjct: 56 VCKATTDAKKGGDCIALCAHVMQTTNF---EAGQYLAQQIG 93 >gi|322435638|ref|YP_004217850.1| hypothetical protein AciX9_2025 [Acidobacterium sp. MP5ACTX9] gi|321163365|gb|ADW69070.1| hypothetical protein AciX9_2025 [Acidobacterium sp. MP5ACTX9] Length = 407 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 43 CPFHDEKTPSFHCN-DSKGFYYCFSCHVKGDHLSFLS-----ALLGCSFIESVQRL 92 CP H++ PS + + G + C +C G ++F S +++ RL Sbjct: 151 CPVHNDSRPSLTVDLNDHGTWKCHACDRGGKLIAFEQWVAKSKGEDLSTKDALPRL 206 >gi|37528187|ref|NP_931532.1| replicative DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787624|emb|CAE16731.1| replicative DNA helicase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 469 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 18/165 (10%), Positives = 47/165 (28%), Gaps = 10/165 (6%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 A + + KL E ++L L+ + + + + Sbjct: 2 AGKKSTHNKMAEPKDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSR 61 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 +++++ + + + L + G +L+ A L + Sbjct: 62 PHRRIFAEMQRLLEMGNPIDLITLSESLEQSG------ELNNVGGFAYLAELSKNTPSAA 115 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 Y + R R + R+ + +IA + + L+ Sbjct: 116 NINAYADIV----RERAVVREMIAVANEIADAGYDPQGRSSEELL 156 >gi|332828409|gb|EGK01118.1| chaperone ClpB [Dysgonomonas gadei ATCC BAA-286] Length = 863 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 74/212 (34%), Gaps = 10/212 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + + +++ K + K +++ A++ + Sbjct: 318 YQKYFEKDKALERRFQTVMVDEPSEADAISILRGLKEKYENHHKVRIKDEAIIAAVQLSS 377 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + +L Sbjct: 378 RYISDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEKSRRIKQLEIEREAIRRENDKLKE 437 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q + E D++ +Q + + + + E + + + +G+ K A Sbjct: 438 QELSKEISRLKDEE--KDLKAKWQSEREVINKIQQNKIEIENTKFEAEKAEREGDYGKVA 495 Query: 616 IL----ISILHE----VHIQIHQIESQEAMIE 639 L + L + + Q+H+++ +AMI+ Sbjct: 496 ELRYGKLKELEDGIGKLQGQLHEMQGNQAMIK 527 >gi|160942807|ref|ZP_02090047.1| hypothetical protein FAEPRAM212_00284 [Faecalibacterium prausnitzii M21/2] gi|158445859|gb|EDP22862.1| hypothetical protein FAEPRAM212_00284 [Faecalibacterium prausnitzii M21/2] Length = 173 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 20/41 (48%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 Y+CF C GD + F +AL G E+ +LA G+ Sbjct: 6 RYHCFGCGADGDVIDFAAALYGLRKKEAAVQLAQDFGLSYE 46 >gi|302385521|ref|YP_003821343.1| hypothetical protein Closa_1104 [Clostridium saccharolyticum WM1] gi|302196149|gb|ADL03720.1| hypothetical protein Closa_1104 [Clostridium saccharolyticum WM1] Length = 595 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 63/450 (14%), Positives = 131/450 (29%), Gaps = 61/450 (13%) Query: 2 NYPRDF---IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 +YP+DF I + + L+ ++ RR+ N+V D CPF +++ + N Sbjct: 3 SYPQDFPFGI------MDVVELL--HLHIRRRQANSVYVD----CPFCNDRRGKMNVNYV 50 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAA------------------------ 94 K + C C G L+ +++ + ++ + + Sbjct: 51 KNVWRCNYCGEHGGMLALYASVNNTTNSDAYREICDILQTDPPWGYEAEKKYFGCAGASN 110 Query: 95 ---IAGVPLPVVDPK------IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 G P + E + + + + + L R H Sbjct: 111 GEPRIGSSYPDRAQETSAEVLEEVPQSKRASDQEIHQTYSLLL-EMLSLTDRHRRHLRSP 169 Query: 146 ERGIDSHAIEMFKLGYAPDSR--YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR 203 +RG+ I+ P SL E L KG + + + ++ N + +++ Sbjct: 170 KRGLTDEQIDSLGYKSTPPVFLCRSLTERLTAKGCT-VQGVPGFYQLEDGNWSVKFNKRT 228 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 ++ P + G + + ++ N P + K + + S Sbjct: 229 AGILIPAKGLDGLIHGIQ---ILLDVPLRNENDPPDKVGAKYIWFSSSTKYMGTTSGSPV 285 Query: 264 KDVRRNSSSFIILVEGYM--DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPR--IVL 319 V + + + EG + D+ L ++ L L + IV Sbjct: 286 HFVGNPFARTVYVTEGLLKADIAHLLMNRSFVAIAGANNVSRLDLLFTLLAQNGTELIVE 345 Query: 320 CFDGDDPGLRAAYKAI-DLVLCHLIPGNRVNFV-LLSRGEDPDSFIRCYGKTAFEKLIVE 377 D D A + + L G + + D + + +K Sbjct: 346 AHDMDKYSNEAISQGASKIYLMARKHGMDCRRLTWNPNYKGVDDWQLALRRKEIQKKEEA 405 Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIH 407 S+ E N E + Sbjct: 406 SMNFKARYLSGLCEMDDINRSVETWQRNQE 435 >gi|303246078|ref|ZP_07332359.1| hypothetical protein DesfrDRAFT_0834 [Desulfovibrio fructosovorans JJ] gi|302492474|gb|EFL52345.1| hypothetical protein DesfrDRAFT_0834 [Desulfovibrio fructosovorans JJ] Length = 231 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 68/223 (30%), Gaps = 20/223 (8%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK--GFY 62 ++ I + + + + D G+Y CP SF + G Sbjct: 7 KNLIDKINSKYSLIDYLSD---LD-TGIKNKSGNYT--CPLCGHD--SFSVFEDTTVGLC 58 Query: 63 YCFS----CHVKGDHLS-FLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 +C S C KGD S +L+ F ++++ ++ + + + ++ K K Q D Sbjct: 59 HCKSGSCTCSFKGDIFSLYLAKNPKKKFTDAIKYFSSKVNID-YIEELELTKNLKWQLDY 117 Query: 118 IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKG 177 + F+ +L + + ++ D + S K Sbjct: 118 LAKCRQYLAFY--NLNASDIMKNFTSINCENEDFAVNSKRFYSVLKGNIESYSMMY--KV 173 Query: 178 FSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAF 220 + + ++ + + N + R + A Sbjct: 174 VTILRTEITDEKLERYEKDRIRNDYHNDQVNQYYKERNTINAI 216 >gi|218129446|ref|ZP_03458250.1| hypothetical protein BACEGG_01023 [Bacteroides eggerthii DSM 20697] gi|255008149|ref|ZP_05280275.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313145868|ref|ZP_07808061.1| DNA primase [Bacteroides fragilis 3_1_12] gi|217988176|gb|EEC54499.1| hypothetical protein BACEGG_01023 [Bacteroides eggerthii DSM 20697] gi|313134635|gb|EFR51995.1| DNA primase [Bacteroides fragilis 3_1_12] Length = 295 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 YW P +E+TPSF ND +Y F GD + Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65 >gi|126314484|ref|XP_001378627.1| PREDICTED: similar to Homeobox protein cut-like 1 (CCAAT displacement protein) (CDP) [Monodelphis domestica] Length = 1696 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 313 DPVPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 372 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + + L T + Sbjct: 373 EQTLKNQAENIALEKEQKLQNDFAEKERKLQETQMSTASKLEEAEQKVQT--LQTALEKT 430 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 431 RTELFDLKSKYDEETAAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANKSLQLA 490 Query: 552 -------QLDRQV-----RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 +++ + + A E I + + Q+ A + R S Q ++ Sbjct: 491 TQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 550 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 551 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 596 >gi|220927541|ref|YP_002504450.1| replicative DNA helicase [Clostridium cellulolyticum H10] gi|219997869|gb|ACL74470.1| replicative DNA helicase [Clostridium cellulolyticum H10] Length = 446 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G++ + E ++L +++ ++ + L + + ++++ + F + Sbjct: 7 GRIPPQSLEAEQSVLGSMLIDKEVVPVVMEVLKSEDFYRPDHKEIYDVIIELFDRAQPID 66 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + +RL G EL+ L+ L + TE + Y + + + L R Sbjct: 67 LITVSERLKLHGKLELVGGLE------YLTNIATEVPTTANVKHYAKIVE----EKALLR 116 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + I + E T IL + + + SQ Sbjct: 117 KLIKASSDIVDLGYNASEEVTYILDRAEQNIFDILQKRSSQ 157 >gi|187478914|ref|YP_786938.1| ATP-dependent protease ATPase subunit [Bordetella avium 197N] gi|115423500|emb|CAJ50034.1| ATP-dependent protease, ATPase subunit (chaperone) [Bordetella avium 197N] Length = 867 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 55/158 (34%), Gaps = 3/158 (1%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELL 550 ++H I + I + ++ + S I ++ E Sbjct: 375 LSHRYITDRFLPD-KAIDLIDEAASRIRMEIDSKPEVMDKLDRRIIQLKIEREAVKKETD 433 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 R++ + D + ++ A + + + + + + ++A++ KG+ Sbjct: 434 DASLRRLAAIEEELERLQREYNDYEEVWKAEKAAVQGAQSIKEEIDRVRAEMAELQRKGQ 493 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 +K A L L E+ ++ + E+ IE SG+ Sbjct: 494 FDKLAELQYGKLPELEARLKAADMAESDIERAEAKSGK 531 >gi|307565705|ref|ZP_07628174.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345531|gb|EFN90899.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 289 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 P +E PSF + K + ++ G + L GC+ E++ RL A Sbjct: 4 SPLREETHPSFKVDTEKNLWIDYAEGRGGSIIDLCIRLEGCTLSEAICRLGQNA 57 >gi|239918774|ref|YP_002958332.1| primary replicative DNA helicase [Micrococcus luteus NCTC 2665] gi|281415000|ref|ZP_06246742.1| replicative DNA helicase [Micrococcus luteus NCTC 2665] gi|239839981|gb|ACS31778.1| primary replicative DNA helicase [Micrococcus luteus NCTC 2665] Length = 462 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/176 (11%), Positives = 54/176 (30%), Gaps = 22/176 (12%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP- 534 L + E ++L ++ + + + L + + ++ + + + Sbjct: 21 LPPQDLEAERSVLGGMMLSKDAIADVVELLRGHDFYRPSHEMIYEAIIDLYGRGEPADAV 80 Query: 535 --EEIH---QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ Q L G +L +L + V A S E ++ + + Sbjct: 81 TVADLLNKRQELSRVGGPAVLHELIQSVPTAANASFYAEIVAEKA--VLRRLVTAGTKIT 138 Query: 590 LL--------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L E + +I A+ + + A ++ + +I +Q Sbjct: 139 QLGYQGDGEVEEIVNEAQSEIYKVAENRQSEDYVRLAEIMEHAVD---EIEAAGNQ 191 >gi|57234331|ref|YP_181612.1| DNA primase domain-containing protein [Dehalococcoides ethenogenes 195] gi|57234919|ref|YP_181024.1| DNA primase domain-containing protein [Dehalococcoides ethenogenes 195] gi|57234958|ref|YP_181001.1| DNA primase domain-containing protein [Dehalococcoides ethenogenes 195] gi|57224779|gb|AAW39836.1| DNA primase domain protein [Dehalococcoides ethenogenes 195] gi|57225367|gb|AAW40424.1| DNA primase domain protein [Dehalococcoides ethenogenes 195] gi|57225406|gb|AAW40463.1| DNA primase domain protein [Dehalococcoides ethenogenes 195] Length = 868 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 17/64 (26%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--FYYC 64 I D+L + + + ACCP H +K PS + G C Sbjct: 9 TIDDILAKL--------------QGVKKNGSGWMACCPAHADKNPSLSVCEKSGKILIKC 54 Query: 65 F-SC 67 F C Sbjct: 55 FAGC 58 >gi|333027429|ref|ZP_08455493.1| putative DnaB domain protein helicase domain protein [Streptomyces sp. Tu6071] gi|332747281|gb|EGJ77722.1| putative DnaB domain protein helicase domain protein [Streptomyces sp. Tu6071] Length = 550 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 46/148 (31%), Gaps = 13/148 (8%) Query: 476 LSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E ALL I+ H E + + LW L +Q+ Sbjct: 68 PPPGDPASERALLAACIHDKHHREYDEAAAIITRDDFTVPAYAVLWDVLGDQIRDQRPTD 127 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P+ + L RG +L G +A + + +A+ R R L Sbjct: 128 PDTLRVELDRRG------ELRPFGPGGGHLHEIADAYSGGSAEYFAEAIRRTSRLRDLD- 180 Query: 594 QKEEIEKQIAQVTAKG-EAEKTAILISI 620 ++ +I G + E+ LI+ Sbjct: 181 ---DLTTRIKAGIHTGRDLEELEGLITR 205 >gi|307595308|ref|YP_003901625.1| SMC domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550509|gb|ADN50574.1| SMC domain protein [Vulcanisaeta distributa DSM 14429] Length = 826 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 32/253 (12%) Query: 405 EIHLKNCINHIKDQKLRY-YYSQAIRDRLQQLFQKYITEHSG-YGRYWKKNARHRDQKGP 462 + +KD+ + Y +R+ L+ + R ++ +R R+ + Sbjct: 330 IYKAFEELAKLKDKLVEDREYLSNVRNDLEIQSESLKASLRELEARLSQEESRVREYRAL 389 Query: 463 SQRLMQSSLVKGKLSKKPSLRE--------AALLLTLINHPAILQEQYQE--LADIRYDN 512 + + V+ + + S E LL ++ + IL + + + Sbjct: 390 VSKYGEPIKVRKDIEELRSRLEKLSSEESFRISLLNVLQY--ILSNHEERCPVCNRPLSE 447 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 + + + + + + + EEI +L E L+++ + EA + Sbjct: 448 EDYENIKRRI-EELSKGRNDEIEEIRNKLNE------LEKVLTNMETLLPIVNDYEATVE 500 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----------ILISIL 621 R + A+ + + R +I+++I +T + + L Sbjct: 501 RARDVRSRFEAVVSKLETIERSIRDIDRRIQALTRFVDEFRAEIDDIDRAISYLRKYREL 560 Query: 622 HEVHIQIHQIESQ 634 + + Q ++ Q Sbjct: 561 NSLKQQEEELRQQ 573 Score = 39.1 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 23/240 (9%), Positives = 68/240 (28%), Gaps = 27/240 (11%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +R RL + + + ++ + + + + Sbjct: 181 EELINRLRQRLASVKELPEIIVKYGSIEKAREKVRELREEIDKLRKEEEELSNTYNDLLK 240 Query: 482 LREAAL-------------LLTLINHPAILQEQYQELADIRYDNN----ELQKLWSFLFS 524 RE L + I L+++ + + + L++L L Sbjct: 241 RREEILKNFKGVEEVYSNYIAIRIRR-ENLEQELERVGVKEVNETSIRLRLERLRDSLIE 299 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + +L L + + + + + + D L Sbjct: 300 KLEEYALVKEADEVSKLVITN-DNLAEAAENIYKAFEELAKLKDKLVEDREYLSNVRNDL 358 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAK--------GEAEKTAILISILHEVHIQIHQIESQEA 636 + L E+E +++Q ++ + + + + E+ ++ ++ S+E+ Sbjct: 359 EIQSESLKASLRELEARLSQEESRVREYRALVSKYGEPIKVRKDIEELRSRLEKLSSEES 418 >gi|290476882|ref|YP_003469793.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus bovienii SS-2004] gi|289176226|emb|CBJ83031.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus bovienii SS-2004] Length = 459 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 13/133 (9%), Positives = 42/133 (31%), Gaps = 3/133 (2%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + KL E ++L L+ + ++ + + +++++ + Sbjct: 4 PKDRQVEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVSSNDFFSRPHRRIFAEMQRL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L + G L + A L T A ++ + A+ Sbjct: 64 LERGQPIDLITLSESLEQNG---ELDSVGGFAYLAELSKNTPSAANINAYADIVRERAVV 120 Query: 586 KRFRLLSRQKEEI 598 + ++ + + Sbjct: 121 RDMIAVAHEIADA 133 >gi|146297060|ref|YP_001180831.1| ATPase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410636|gb|ABP67640.1| ATPase AAA-2 domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 864 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 72/205 (35%), Gaps = 10/205 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R ++ + + +++ + ++ + + AL+ Sbjct: 321 YRRYIEKDAALERRFQPVLVNPPSVEDTISILRGLKERFEIHHGVRITDDALIAAAKLSD 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + L + + S E + + R+ +L++ + Sbjct: 381 RYITDRFLPDKAIDLIDEAAALLRTEIDSMPTELDEITRKIMQLRIE----KNVLQKEEN 436 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQAL-----ALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 L E ++ R A L K R + + E+++ +I + + Sbjct: 437 PSTKQRLEEIDKEIAELNDRANQLSAQWEYEKELIKEVRKIKEEIEDVKIKIEEAERNYD 496 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634 K + L L E+ ++ Q + Sbjct: 497 LNKLSELKYGRLLELQKRLEQKRQE 521 >gi|325115846|emb|CBZ51401.1| conserved hypothetical protein [Neospora caninum Liverpool] Length = 1244 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 12/228 (5%) Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + D+ L+ + +Q + Q+F E + + + + Sbjct: 668 MRKSSDETLKLHLAQQLAS--FQIFSAQKVETTAMLEKQCALLQDQLSSLSHLFEASQAE 725 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + L + + L TL H A +E + L + + + E E+ Sbjct: 726 MARHLEETKEKHQETLEKTLAVHQAEAEEVLKRLGEEQREIEERHSSEKEELKHKAEKAE 785 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E + R LK+L R + +V +Q LL Sbjct: 786 Q--ELLLTTGRNRTLEAELKELQRLYEEVRSQVGRAVGRCGEVEDREKQEREGR---CLL 840 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ EE+++++ ++ E+ ++L E + +++SQ+A ++ Sbjct: 841 EQRTEELKEELTRLR-----ERDTSHSALLKERETLLAELQSQKAALQ 883 >gi|313900381|ref|ZP_07833875.1| replicative DNA helicase [Clostridium sp. HGF2] gi|312954930|gb|EFR36604.1| replicative DNA helicase [Clostridium sp. HGF2] Length = 448 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 13/145 (8%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++L ++ +P++ Y + L + + Q+++S + K Sbjct: 2 SRELPHSTEAEQSILGAMMIYPSVTSVVYDQGLDVRDFYLDIHQRIFSAMMDITDSGKPV 61 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + RL + ++QL V A ++ I Y + R Sbjct: 62 DVTTLIARLQD------IEQL-NLVGGADYIIKLSDTAISSANSVY---YIEMIKSRAHL 111 Query: 593 RQKEEIEKQIAQV--TAKGEAEKTA 615 R+ E +QIA+ + ++ Sbjct: 112 RRLIEAAEQIAEDGFDTANDLDEIM 136 >gi|257793091|ref|YP_003186489.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479783|gb|ACV60100.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 457 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 19/212 (8%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-- 487 +R + RH + + SQ V + + + + L Sbjct: 104 ERRGEDNDPMRKARRAKFLKEYWGIRHGNNQRTSQIEKSYRDVAQAIGESVATTQRLLKL 163 Query: 488 ------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L L++ + ++LA + L+ L + + + +E+ +RL Sbjct: 164 NDLIPELQALVSSGKLGTSAAEQLA--YLSPEIQRSLYEALGEEIANRTFAETKELRRRL 221 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 E + R + E + RQ +Q + + S + +E++ Sbjct: 222 EEAELRD-----QETARLQAELAELREQGREEDRQKIEQLERRIRDLQAQSWRVVTLEQE 276 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ + +G E + E+ +I ++++ Sbjct: 277 LSALRERGRKEDRE----RIAELEREIEELKN 304 >gi|330917663|ref|XP_003297906.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1] gi|311329207|gb|EFQ94037.1| hypothetical protein PTT_08462 [Pyrenophora teres f. teres 0-1] Length = 2507 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 38/260 (14%), Positives = 87/260 (33%), Gaps = 30/260 (11%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYI 440 + +R + + L +K + + R Q + +++QQ + + Sbjct: 900 RIIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQLEEKMQQ---EAV 956 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAI 497 + + + + +L K ++ K+ LREA L L I Sbjct: 957 ERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKLAGAIEDQDQ 1016 Query: 498 LQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554 L++Q L + E + L L +I +L + ++LD Sbjct: 1017 LEDQLDALMEAKKKTEEEAEHLRRELEQA---------GQIISKLEGETQELEQQARRLD 1067 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEK 613 Q+++ + + + Q + + L R+ +++E ++ K + + Sbjct: 1068 EQLKELEVIRSQ----RSQAEEKLSQEIKMLTSHLALKERKLQDLEAKL----LKTDQDL 1119 Query: 614 TAILISILHEVHIQIHQIES 633 L + + EV QI+ Sbjct: 1120 DIKLAASVKEVQASKKQIKE 1139 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 30/280 (10%), Positives = 82/280 (29%), Gaps = 17/280 (6%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 +K + L + E+ + R + + L + I ++ + Sbjct: 1997 QAKKRLQNELEDYRSQHAHDVEDSETSLEQTRKKYQSELASLTQEIDQERENVILVREEN 2056 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 RL++ ++ + + +++ L S + + + + ++ ++ Sbjct: 2057 GRLREEIEELRNKWDDEL--LNSSTWAKEKSRLEMTLQTISNSRDEAANAHNEAQSKIVS 2114 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 L + A+ E ++L S L E + Sbjct: 2115 LLSQVRTLRTNVDDLAAERDSAIEEKKRLESRLQEAADALDDLSRSESPAMRNAAAYDRD 2174 Query: 550 LKQL-----------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L +L V A + D+ + + L+K + + +++ Sbjct: 2175 LLELKSGLAQQEDITAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKALKDL 2234 Query: 599 EKQIAQVTAKGEAEKTAI----LISILHEVHIQIHQIESQ 634 + ++ + KG + L + E+ + ES Sbjct: 2235 QLRLVDLETKGYSGSAGKDVRFLNGRIQELEKALENSEST 2274 >gi|312958300|ref|ZP_07772821.1| hypothetical protein PFWH6_0197 [Pseudomonas fluorescens WH6] gi|311287364|gb|EFQ65924.1| hypothetical protein PFWH6_0197 [Pseudomonas fluorescens WH6] Length = 962 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 2/70 (2%) Query: 31 KTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIES 88 K +Y A P +K S N SKG + F+ GD + + + G + +++ Sbjct: 37 KRVDGGKEYTAPNPTRTDKRAGSLKVNLSKGTWADFATGDKGGDLIDLVRYIEGGTDVKA 96 Query: 89 VQRLAAIAGV 98 ++LA + V Sbjct: 97 CKKLADLLSV 106 >gi|257470270|ref|ZP_05634361.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] gi|317064481|ref|ZP_07928966.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] gi|313690157|gb|EFS26992.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] Length = 437 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/164 (11%), Positives = 52/164 (31%), Gaps = 12/164 (7%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + K + E A++ + L + + L+ + N +L+ +++ + + E K Sbjct: 5 EIKKIPYNTEAEKAVIGGIFLKQNALTDIAEFLSPDDFYNKDLKIIYAAILELYNENKAI 64 Query: 533 LPEEIHQR---LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-- 587 P I ++ + F E+++ + + + Q + Sbjct: 65 DPILILEKNKNIKNDTFYEVIESVQTAANVIEYAHIVMDKAKLRNLQDSATKIVEMTSDE 124 Query: 588 ---FRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEV 624 + + E + +IA+ + + L V Sbjct: 125 EETTEDIIDRSEALIFKIAENNNTRNVISIKDMMNSEFTRLQNV 168 >gi|170052018|ref|XP_001862031.1| PFTAIRE-interacting factor 1A [Culex quinquefasciatus] gi|167872987|gb|EDS36370.1| PFTAIRE-interacting factor 1A [Culex quinquefasciatus] Length = 859 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 92/300 (30%), Gaps = 24/300 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + + A K ++ + E+ + + EL K +I + Sbjct: 477 YNSWQLQEQMAATKRQFNAINYIPPEHIEYYESANGDLQMRLNELMTREKELTQNIAE-- 534 Query: 420 LRYYYSQAI--RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L Y++ + D L +K + + N + + + +RL + S + Sbjct: 535 LNRAYNETLENADNLWAQMEKEYKDKISKCETVETNLKSKISQL-EERLSKDSEYAHERI 593 Query: 478 KKPSLREAALL----LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 E +L + ++ + L + E +KL ++L E Sbjct: 594 SHLEEAENSLKNRVSKLNKENKELIAKHATLLEEYSTLKEEYRKLQNYLRGPAAENLEKE 653 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR---- 589 +I L ++L R + + + +R A Sbjct: 654 KRKIL---------TLEEELSHSTRQLKEVEDSHRSELGHLRGQLMCASKELNHIEVTNS 704 Query: 590 LLSRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 L + E +E +I ++ + E+ L L QI ++ + G G GR Sbjct: 705 ELREEVETLEGRIRELLTLRNADDERIKHLAEELQAKQAQIQHMQHSGSTKVGGGAGYGR 764 >gi|302390762|ref|YP_003826583.1| primary replicative DNA helicase [Thermosediminibacter oceani DSM 16646] gi|302201390|gb|ADL08960.1| primary replicative DNA helicase [Thermosediminibacter oceani DSM 16646] Length = 451 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/183 (10%), Positives = 59/183 (32%), Gaps = 12/183 (6%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +L+ K+ E ++L +++ + + L + ++++ + + Sbjct: 2 NLMPPKVPPHNMEAEQSVLGSMLLSREAIYVALERLKSEDFYIEAHRRIFDIIAELHENR 61 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALALY 585 + + L R E + + + IV+ + ++ + Sbjct: 62 DPVDLITVTEALRSRKMLEEVGGVTYLTNLTEVVPTPANIAQYCKIVEEKALLRRLIETA 121 Query: 586 KRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + L +E E++I + K + + +L +I Q+ + + Sbjct: 122 SKILSLAYEPKDDVEELLDEAERRIFGIVQKRRVDNFHHIKDVLLATFERIEQLYNSKGG 181 Query: 638 IEG 640 I G Sbjct: 182 ITG 184 >gi|172041661|ref|YP_001801375.1| replicative DNA helicase [Corynebacterium urealyticum DSM 7109] gi|171852965|emb|CAQ05941.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 506 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 20/184 (10%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G+ + E +L ++ + + E + L + Q ++ + + E K Sbjct: 67 GREMPQNVAAEQGVLGGMLMNKDAISEVVEVLVMDDFYRPAHQTIFDVIVRLYGEGKEVD 126 Query: 534 PEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 P + R L + G L+ + + + ++ + R Sbjct: 127 PVIVAGRLDRDGKLEQIGGAPYLQSIMSKTPTSANVGYYANLVKEKA--TLRRLVTAGTR 184 Query: 588 FRLL----------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI-QIHQIESQEA 636 L + ++++ +T +E + L + + +I ++ESQ Sbjct: 185 IVQLGYSGIEGAEVESVVDNAQQEMFALTNSATSEDY-EVFERLLDPTLDEIDELESQGG 243 Query: 637 MIEG 640 +G Sbjct: 244 TAKG 247 >gi|327286849|ref|XP_003228142.1| PREDICTED: dynactin subunit 1-like [Anolis carolinensis] Length = 1255 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 93/287 (32%), Gaps = 10/287 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + L E ++E ++ +LEI D Sbjct: 276 EEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLEILKHEIEEKGSDGA 335 Query: 420 LRYYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Y+ + + ++ +L + + + + + + L K KL + Sbjct: 336 ASSYHVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKHMEKKNTELESLRQQKEKLQE 395 Query: 479 KPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPE 535 + E + A L +E + L + D E +++L + + Sbjct: 396 ELKQAERTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRETVGDLEAMNEMNDEL 455 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 456 QENARETELELREQLDMATARVREAEKRVEAAQETVADYQQTIKKYRELTAHLQDVNREL 515 Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA 636 ++ A+ + E K A + + +++ Q+E Q+A Sbjct: 516 MSQQEASAEKQQQPPPEMFDFKIKFAETKAHAKAIEMELRQMEVQQA 562 >gi|325187875|emb|CCA22419.1| conserved hypothetical protein [Albugo laibachii Nc14] Length = 1249 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 95/280 (33%), Gaps = 13/280 (4%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ Y ++L+ + + ++ EN E + D Sbjct: 878 DELKQYLLDEHDRLVQKQARIEAEHKQKLLENEKNRIKVLEEEWAKKEVERNTIVHD--T 935 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + Y + + +L+ + + + ++ R + L++ L + + + Sbjct: 936 QKEYLK-LERQLRASLTELEAKKRQFDTEKAEHERKCQSERNEIDLLRKQLYVERQNAES 994 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 ++ + + ++ A + + ++L + +Q ++ + Sbjct: 995 LDKQRTM--------TLKKQIASLNAQLSASEKKNKRLEAEFVEFQEQQCNITKAKLREE 1046 Query: 541 LCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L RG + L++ + + +A + + + L + ++ + ++ +E+E Sbjct: 1047 LFSLRGTIQALEKEKKFMSEAHNTTKLKLTAMQKQLDNLVKLLEV-EKIKSQTKALDELE 1105 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 TAK E A L ++ Q+ QI AM + Sbjct: 1106 NMKLSCTAKEEKAVLAYEGEELRDIKSQLEQIRQVAAMRK 1145 >gi|256821803|ref|YP_003145766.1| replicative DNA helicase [Kangiella koreensis DSM 16069] gi|256795342|gb|ACV25998.1| replicative DNA helicase [Kangiella koreensis DSM 16069] Length = 461 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 56/168 (33%), Gaps = 18/168 (10%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ E ++L ++ + + + L + ++++ + K Sbjct: 15 KIPPHSIEAEQSVLGGVMLDNEVWEMVSEMLLSTDFYVKNHREIFKAMEELANTAKPMDV 74 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L +G D + A L + + Y + + R + + RQ Sbjct: 75 ITLSEHLEHKG--------DTDISMAFLGDLAQNTPSIANIRAYAEIV----REKAIMRQ 122 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEV-HIQIHQI-ESQEAMIEG 640 +IA ++ L ++ ++ I +++EA EG Sbjct: 123 LISASNEIADA----SFNPKGRGLAELMDMAERKVFAISQAREASGEG 166 >gi|210633965|ref|ZP_03297936.1| hypothetical protein COLSTE_01854 [Collinsella stercoris DSM 13279] gi|210159009|gb|EEA89980.1| hypothetical protein COLSTE_01854 [Collinsella stercoris DSM 13279] Length = 229 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 62/169 (36%), Gaps = 15/169 (8%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 L ++ + E LL L +P + + + ++ + + + + + + Sbjct: 73 TDLERRQLMCERELLTMLTTYPDSFRPFAERITEVEWVDARNETIAWAVLATPEGTGAAE 132 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + +C ++ AG+ S+T++ L LY R Sbjct: 133 VMAAARAVCPE---------AAELVSAGMISSTSKHPTETNIGFLLDTLELY----TARR 179 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE-SQEAMIEGF 641 + + + ++ ++ G E+ A+ I + +I ++E + E + + F Sbjct: 180 RMKAAQGRLRSDSSLGSDERRALAIQATQDA-ARIRELERAVEGIADPF 227 >gi|198276328|ref|ZP_03208859.1| hypothetical protein BACPLE_02523 [Bacteroides plebeius DSM 17135] gi|198270770|gb|EDY95040.1| hypothetical protein BACPLE_02523 [Bacteroides plebeius DSM 17135] Length = 295 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 YW P +E+TPSF ND +Y F GD + Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65 >gi|149758398|ref|XP_001497462.1| PREDICTED: similar to Hook homolog 1 (h-hook1) (hHK1) [Equus caballus] Length = 835 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 39/343 (11%), Positives = 105/343 (30%), Gaps = 28/343 (8%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 DG + + L +D + + + Sbjct: 340 DGSFDDPNTMVAKKYFHAQLQLEQLQEENFRLEAAKDDYRVHCEELEKQLIEFQHRN--- 396 Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441 ++ E + D + ++ + + +R +++ L + + Sbjct: 397 DELTSLAEETRALKDEIDVLRATSDKASKLESTVEVYRQKLQDLNDLRKQVKTLQETNMM 456 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAI 497 ++ + + + + S R L + H A+ Sbjct: 457 YMHNTVSLEEELKKANAARTQLETYKRQVQDLHSKLSSESKRADTLAFEMKRLEEKHEAL 516 Query: 498 LQE---QYQELADIRYDNNELQ--KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 L+E ++ ++ N EL+ ++ + E + + + E+ + Sbjct: 517 LKEKERLIEQRDALKETNEELRCSQVQQDHLNQADASATKSYENLAAEIMPVEYREVFIR 576 Query: 553 LDRQVRDAGLWSA-TTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEK 600 L + + L T I ++++ +Q +R R L +Q E+++K Sbjct: 577 LQHENKMLRLQQEGTENERIEELQEQLEQKHRRMNELETEQRLSKERIRELQQQIEDLQK 636 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQI----HQIESQEAMIE 639 + + AK E E ++ L L ++ +++ ++ +IE Sbjct: 637 SLQEHGAKPEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIE 679 >gi|297155310|gb|ADI05022.1| ATP-dependent Clp protease [Streptomyces bingchenggensis BCW-1] Length = 874 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 74/216 (34%), Gaps = 16/216 (7%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 Q ++K+I + + R +++ + +++ + ++ +++ AL+ + Sbjct: 322 QEYRKHIEKDAALERRFQQVLVDEPSVEDTISVLRGLRERLEVFHGVKIQDTALVSAATL 381 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 +H I + I + +L + + S E + + + Sbjct: 382 SHRYISDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALAKETD- 439 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQV 605 + L E + ++A +R + R+ +E+ K++ + Sbjct: 440 ---PASEQRLAELRRELADLRAEADAKRAQWEAERQSI--RRVQELRKELEEVRRDAEEA 494 Query: 606 TAKGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640 + + A L L E+ ++ E Q A +G Sbjct: 495 ERVYDLNRAAELRYGRLQELERRLAAQEEQLAAKQG 530 >gi|269958118|ref|YP_003327907.1| replicative DNA helicase [Xylanimonas cellulosilytica DSM 15894] gi|269306799|gb|ACZ32349.1| replicative DNA helicase [Xylanimonas cellulosilytica DSM 15894] Length = 453 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 52/169 (30%), Gaps = 14/169 (8%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + ++ + + E ++L ++ + + + + + + ++ + Sbjct: 7 ESSYSATPAFDRTPPQDVNAEMSVLGGMLISKDAIADVVETIRGNDFYRPAHETVYDSII 66 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + L RG +LDR A L Y + + Sbjct: 67 DLYGRGEPADAITVADELRRRG------ELDRIGGAAFLADLVAGVPTAANAGYYARIV- 119 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQI 628 R R + R+ E +I Q+ E + + ++ V + Sbjct: 120 ---RERAVLRRLVEAGTRIVQLGYAREGGDVDDIVNNAQAEIYAVTERR 165 >gi|189461058|ref|ZP_03009843.1| hypothetical protein BACCOP_01705 [Bacteroides coprocola DSM 17136] gi|265753993|ref|ZP_06089348.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|189432148|gb|EDV01133.1| hypothetical protein BACCOP_01705 [Bacteroides coprocola DSM 17136] gi|263235707|gb|EEZ21231.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 295 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 18/39 (46%) Query: 36 KGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 YW P DE+TPSF ND +Y F GD + Sbjct: 27 SKQYWYLSPLRDERTPSFKVNDRLNEWYDFGAATGGDLV 65 >gi|75906555|ref|YP_320851.1| DnaB helicase [Anabaena variabilis ATCC 29413] gi|75700280|gb|ABA19956.1| primary replicative DNA helicase [Anabaena variabilis ATCC 29413] Length = 450 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 48/140 (34%), Gaps = 10/140 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +L + E A+L ++ P + + L + + + ++ + K Sbjct: 13 NRLPPQNIEAEEAILGGILLDPEAIGRVSEVLITEAFYISAHRDIYQAALRLHGQGKPTD 72 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + +LL ++ + + A L T A +D G + L R Sbjct: 73 LLSVTSWLTDN---DLLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122 Query: 594 QKEEIEKQIAQVTAKGEAEK 613 Q + +I + + E E Sbjct: 123 QLIKAGNEIVHLGYETEKEL 142 >gi|317476183|ref|ZP_07935434.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] gi|316907594|gb|EFV29297.1| DNA primase [Bacteroides eggerthii 1_2_48FAA] Length = 295 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 35 VKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 YW P +E+TPSF ND +Y F GD + Sbjct: 26 TSKQYWYLSPLRNERTPSFKVNDRLNEWYDFGAATGGDLV 65 >gi|220931195|ref|YP_002508103.1| hypothetical protein Hore_03470 [Halothermothrix orenii H 168] gi|219992505|gb|ACL69108.1| hypothetical protein Hore_03470 [Halothermothrix orenii H 168] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 65/449 (14%), Positives = 134/449 (29%), Gaps = 38/449 (8%) Query: 144 LDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE-EKIIEAGLLIDGDNSATSYDRF 202 R D++ + H G + I D+ + Sbjct: 25 WQARCPAHEDKVESLSVSRGDNKINFHCHAGCSGKDILRAMGLNWSDIYFDDEPGKKKKS 84 Query: 203 RNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSI 262 + + R G+ + RT +K K + GK + G L K Sbjct: 85 KVVKEYIYRDENGRPLHKTLRTANKDFLQKR--------YENGKWKWGLKGVRTVLYKLE 136 Query: 263 RKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD 322 N++ + LVEG D +L + G+ + LG A R+V+ D Sbjct: 137 EVKEAINNNDVVYLVEGEKDADNLHKIGLTGTCNPLG-AGKWKPGYTETLKGARVVILPD 195 Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382 D PG + A + + L + ED ++ G +V+ P Sbjct: 196 NDKPGKKHARNIAKELHGKAKLVKILELPGLDKKEDVSDWLDKGGTKEKLLQLVKDCPEW 255 Query: 383 DMLWKRETENRSFNTPDERA--------ELEIHLKNCINHIKDQKLRYYYS------QAI 428 + FN D + L N + A+ Sbjct: 256 KPGINNWPDPLPFNNFDVKPIPVNILPNWLSDFAINLAEFTQTPIDMSIMLIISALGTAL 315 Query: 429 RDRLQQLFQKYITEHSG------YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 ++ +K TE +K+ + P + + + ++ +L Sbjct: 316 ANKGVVQIRKGYTEPLNIWTCTVLPAGNRKSPVFKKIMKPILDYEERKREEIEPERRHAL 375 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 +E ++L + +Q +++A D + +++ +F+ E + + + + Sbjct: 376 KEKSILEDQL-------KQKEKIAGNAKDQAKRKQIMQEIFNLDDEIQEMEIPTLPRLVA 428 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANI 571 E L +L + + + E +I Sbjct: 429 SDVTTEKLAKLMED-NNGRIAILSPEGDI 456 >gi|147794011|emb|CAN64468.1| hypothetical protein VITISV_036942 [Vitis vinifera] Length = 1539 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 63/560 (11%), Positives = 163/560 (29%), Gaps = 39/560 (6%) Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 + ++++ L L A + F K R + S L +++ Sbjct: 599 EHDRLRESLGNLKSSAREQFKKLQKEISGIRGSSPMRRINSSSEVGLCGILQEKASEKWT 658 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + + + + S S + F VI R+L + Sbjct: 659 DVDKTIDTLMTTLDTVYEQVNNIVYLSKASVSEWLQDWEFQ-GEIEAMVIEHSIRSLREE 717 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + N + F ++Y + D +L L Sbjct: 718 FEERSWN--QNAHFCGNGSVYWPEKTKEISRLRQELDAISK-----MLSTSEFGQLISHG 770 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 + + + ++L ++G+ + + + + + Sbjct: 771 SCEIGEEWNNTKGTDHFHRKVLSNHVSPATSVWEGNGKHEESKTSMPENLESSSLLKHMS 830 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 L + + + +R ++ +++ + + L K + E + + Sbjct: 831 KEELFNHFKTEMTKMRRNHESQVQEMAEQYISLKGKFLKERGSSLPLRKDKEFDAMRKKI 890 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I + D + A + + L + + D+K + L Sbjct: 891 PEVILKLDDILVENEKLPAFSNNAESLGSLKDRLDTLLSENHQLRDSLTDRKKEVRYLST 950 Query: 469 SSLVKGKLSKKPSLREAALLLTL------INHPAILQEQYQEL----------------A 506 V + + SL EA LL + I I +++ Sbjct: 951 QLSVAAEKMSQHSLAEAKLLKIIGNLKSAIEDAKIEASISEDVNKCILSEVTNQIKCDTE 1010 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSA 565 + ++ +Q+++ + + + +E+ + + + + + R + Sbjct: 1011 ESNMESTLMQQIYEVILREAAQNAETTSKEVMKDAEAKLNIMNVKYDCENEARVSIEIKV 1070 Query: 566 TTEANIV----DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL 621 + + D ++ +Q + L + L +++ +E A V K + E + ++ L Sbjct: 1071 VEKEKALRLEFDEKERLKQEIILLE-ASLEEKERSALEIADALVKEKEQFELASQELNNL 1129 Query: 622 HEVHIQIHQI---ESQEAMI 638 E Q ++ S+EA I Sbjct: 1130 REHTNQQQKLISESSREADI 1149 >gi|47847498|dbj|BAD21421.1| mFLJ00279 protein [Mus musculus] Length = 1335 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 103/287 (35%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + EKL ++ + E E ++ ELE + +++++ Sbjct: 245 EMETMQSQLMAEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEE 304 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Y QA + ++QQ Q+ + +K + + ++ + + Sbjct: 305 RCQYLQAEKKKMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDQIIMEDQNCK 364 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVE------QKY 531 +E LL + E L + + L KL + +D E ++ Sbjct: 365 LAKEKKLLE------DRVAEFTTNLMEEEEKSKSLAKLKNKHEAMITDLEERLRREEKQR 418 Query: 532 FLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ ++L + + +L Q+ + + A E +++ + + Sbjct: 419 QELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKE---EELQAALARVEEEAAQKN 475 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + ++ E+E QI+++ E+E+ + + ++ ++ ++++ Sbjct: 476 MALKKIRELETQISELQEDLESERASRNKAEKQKRDLGEELEALKTE 522 >gi|57504956|ref|ZP_00370909.1| TnpY [Campylobacter coli RM2228] gi|57019292|gb|EAL55995.1| TnpY [Campylobacter coli RM2228] Length = 623 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y + I + + + + Q + + HD S +K Sbjct: 1 MQYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|73667187|ref|YP_303203.1| replicative DNA helicase [Ehrlichia canis str. Jake] gi|72394328|gb|AAZ68605.1| DnaB-like helicase,N-terminal:DnaB-likehelicase, C-terminal [Ehrlichia canis str. Jake] Length = 488 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 57/173 (32%), Gaps = 15/173 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539 E LL +++ I + + + ++++ + + Sbjct: 24 AEQILLGSMLRDNRICDAVEDIITSDVFFDTLHRRIFEQIVKINKRGLVANEVSLKMFFD 83 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588 + ++ L + A + + V ++ L + + Sbjct: 84 NDEDLIQSGGVEYLAKIAAKASIVFDIKNVANIVVDAYLRRCLISFGQDLISGAYNYDVD 143 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640 Q E +++ + ++G+++KT ++L + +I ++ E +++G Sbjct: 144 NSAIYQIENAAQKLFLLGSQGKSDKTYHQFALLVANIKKKIEFAKNNEGVLQG 196 >gi|54295882|ref|YP_122194.1| hypothetical protein plpp0039 [Legionella pneumophila str. Paris] gi|53755714|emb|CAH17216.1| hypothetical protein plpp0039 [Legionella pneumophila str. Paris] Length = 1955 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/190 (12%), Positives = 54/190 (28%), Gaps = 22/190 (11%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110 S + G ++ F G+ + G S F E+++ A +P + K +K Sbjct: 1575 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLEHAAQYIHY-IPEYERKAPQK 1633 Query: 111 EKIQTDLIRLIE----VATDFFHHS-----------LKNARDKRLHYY----LDERGIDS 151 + + + E +A F S L R + + Sbjct: 1634 LNEKKE-REVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYDHADLRFCRSVYTK 1692 Query: 152 HAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIR 211 E + + ++ ++ + A ++ ++ N + Sbjct: 1693 TQDEQKHVPALLAFSKDEQGNIHHVQITKLEPHSANKDKSCESVKQTFGSISNYFVNLNH 1752 Query: 212 SSRGQVIAFG 221 +G + F Sbjct: 1753 HGKGDIAYFT 1762 >gi|284005930|ref|YP_003391748.1| hypothetical protein Slin_7006 [Spirosoma linguale DSM 74] gi|283821114|gb|ADB42949.1| hypothetical protein Slin_7006 [Spirosoma linguale DSM 74] Length = 323 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 27 WDRRKTNAV-----KGDYWACCPFHDEKTPSFHCN--DSKGFYYCFSCHVKGDHLSFLSA 79 + + W C PF +E PSFH + K + F G+ L F+ Sbjct: 15 LTKLGHQPARTLKAGKELWYCSPFRNELEPSFHTSFLGGKWIWNDFG-DTGGNVLEFVMR 73 Query: 80 LLGCSFIESVQRL 92 ++ +L Sbjct: 74 YYNTDVSGALAQL 86 >gi|56750469|ref|YP_171170.1| ClpB protein [Synechococcus elongatus PCC 6301] gi|56685428|dbj|BAD78650.1| ClpB protein [Synechococcus elongatus PCC 6301] Length = 883 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/204 (10%), Positives = 71/204 (34%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 330 YRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLST 389 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + + + + L Sbjct: 390 RYISDRFLPDKAIDLVDESAARLKMEITSKPEELDEIDRKILQLEMERLSLQKE-SDLAS 448 Query: 556 QVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 Q R L + + +Q + + + + +++ + Q + K Sbjct: 449 QERLQRLEKELADLKEEQRSLSSQWQAEKDVITDIQSVKEEIDQVNLLMQQAERDYDLNK 508 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 A L L E+ +++++E A Sbjct: 509 AAELKYGKLTELQRKLNEMEGGLA 532 >gi|149030735|gb|EDL85772.1| rCG51904, isoform CRA_b [Rattus norvegicus] Length = 766 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 9/207 (4%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 Q+ + + K + +D + L + K ++ ++ LRE L Sbjct: 438 QVKELQLKLKHSQNLDPGKESLLKDLLETRELLEELLEGKQRVEEQLRLRERELTALKGA 497 Query: 494 HPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + QE+ +R + ++L + + E ++ EL K+ Sbjct: 498 LKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAAVEAE---RQKMSSLVRELQKE 554 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAK 608 L+ + G W + N ++R Q+ L L + + E +++ + Q A Sbjct: 555 LEETSEETGHWQNMFQKNKEELRAAKQELLQLRMEKEEIEEELGEKMEILQRDLEQARAS 614 Query: 609 -GEAEKTAILISILHEVHIQIHQIESQ 634 + ++ L L ++ +++++ Sbjct: 615 TRDTQQVEELKKELQRTQGELKELQAE 641 >gi|85859724|ref|YP_461926.1| replicative DNA helicase [Syntrophus aciditrophicus SB] gi|85722815|gb|ABC77758.1| replicative DNA helicase [Syntrophus aciditrophicus SB] Length = 454 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/186 (11%), Positives = 63/186 (33%), Gaps = 12/186 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ L + L + + ++++S + + + Sbjct: 12 RIPPQNREAEQSILGGILLDNESLHSVLEILQIPDFYSEAHRRIFSAILDLYDRNEPCDL 71 Query: 535 EEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYK 586 + L ++ G L L V + + + +R A + Sbjct: 72 ITLSNILNDKSQLDNVGGMAYLASLVDNVPSSANITYYAKIVKEKSVLRSLIGTATEILS 131 Query: 587 RFR----LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 R + ++ E+ I +++ + + I+ + I Q+ +++MI G Sbjct: 132 RSYDPVNDVEEVLDQAEQAIFEISQHKIKPAFSPMREIIKDSFKTIEQLYERKSMITGVP 191 Query: 643 KMSGRL 648 R+ Sbjct: 192 TGFERI 197 >gi|242037103|ref|XP_002465946.1| hypothetical protein SORBIDRAFT_01g048700 [Sorghum bicolor] gi|241919800|gb|EER92944.1| hypothetical protein SORBIDRAFT_01g048700 [Sorghum bicolor] Length = 883 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 78/222 (35%), Gaps = 16/222 (7%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 ++LR S + D+ + L + N + + +S + Sbjct: 258 EELRETTSSSYLDQTKSLRSALEEKQKQIDSLSTSNTELQKSVKDLDERLSASKQSRDDA 317 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + + A++ L + +E+ + + L S L E + + ++ Sbjct: 318 DEIISSQKAIICEL--EGQLSEERNLRREE---RDKAAHDLKSALHKVQAEAQEEIKKQA 372 Query: 538 HQRL-CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L +R E++ +L ++ L + + D R + K+ R L Q + Sbjct: 373 ESYLRQQREQKEVISKLQESEKETRLLVEILRSKLEDARDNL---VTSEKKTRELEAQLQ 429 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEA 636 + Q+ + +K+ L + L ++ ++ ++ +EA Sbjct: 430 D-----EQLVSANNRKKSENLETELRKLKKELENEKAAREEA 466 >gi|38234823|ref|NP_940590.1| replicative DNA helicase [Corynebacterium diphtheriae NCTC 13129] gi|38201087|emb|CAE50811.1| Replicative DNA helicase [Corynebacterium diphtheriae] Length = 506 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 59/169 (34%), Gaps = 11/169 (6%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 R+++G +R + + + + E +L ++ P + + + L + Sbjct: 49 QRERRGYKRREAAMASTEFRQPPHDAEAEQGVLGAMLLSPQTVIDTVELLVAEDFYRPAH 108 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 Q ++ + F + K P + RL L+R L + + Sbjct: 109 QLIFEAIVGLFSDNKEIDPVIVAARLDRN------NDLERVGGAPYLHTLISSVPTAANA 162 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISILHE 623 + Y + +A + L RQ ++ Q+ +G E + +I + Sbjct: 163 RYYAEIVA----EKSLLRQLVNAGTRVVQLGYEGTEGAEVESVIDRAQQ 207 >gi|71409302|ref|XP_807004.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70870905|gb|EAN85153.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1129 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 87/257 (33%), Gaps = 7/257 (2%) Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYIT 441 + ++ E +++ + + + + K++ + RD+ ++ + Sbjct: 438 QQKTFAKKQEEYHKQQIEKKIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLE 497 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPAILQ 499 + + + + L + + L E A + + + + Sbjct: 498 KMEEQMEEINNKNKTLKKSIEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRA 557 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 E + ++ + + + L L E + E + + E + L RQ+ + Sbjct: 558 EDEHKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEE 617 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAIL 617 + A D +G Q+ ++ L RQ EE+ + ++ A+ E + + Sbjct: 618 LRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV 674 Query: 618 ISILHEVHIQIHQIESQ 634 ++ Q+ ++ ++ Sbjct: 675 SEQAEDLQRQLEELRAE 691 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 30/273 (10%), Positives = 95/273 (34%), Gaps = 5/273 (1%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + + + + +S V L +++ + N + ++ + + K++ L+ Sbjct: 457 KIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLEKMEEQMEEINNKNKTLKKS 516 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Q ++ ++ + + + + + + ++S++ Sbjct: 517 IEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRAEDEHKTRGLQEVSEQAEDL 576 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 + L + + E + ++ + + + L L E + E + Sbjct: 577 QRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGL 636 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E + L RQ+ + + A D +G Q+ ++ L RQ EE+ + Sbjct: 637 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENE 693 Query: 604 QVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 ++ A+ E + + ++ Q+ ++ ++ Sbjct: 694 ELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 726 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + ++ + + + L L E + Sbjct: 672 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 731 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E+ ++ + E + L RQ+ + + A D +G Q+ ++ L R Sbjct: 732 AEDENKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 788 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 789 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 831 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 30/259 (11%), Positives = 88/259 (33%), Gaps = 17/259 (6%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + + E EL ++ +++ + Q + L+ ++ E R Sbjct: 681 LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEDENKTRG 740 Query: 450 WKKNARHRDQKGPSQRLMQSSLVK------------GKLSKKPSLREAALLLTLINHPAI 497 ++ + + +++ + ++S++ + L + + Sbjct: 741 LQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEEL 800 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 E + ++ + + + L L E + E + + E + L RQ+ Sbjct: 801 RAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 860 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615 + + A D +G Q+ ++ L RQ EE+ + ++ A+ E + Sbjct: 861 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQ 917 Query: 616 ILISILHEVHIQIHQIESQ 634 + ++ Q+ ++ ++ Sbjct: 918 EVSEQAEDLQRQLEELRAE 936 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + ++ + + + L L E + Sbjct: 917 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 976 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E RG E+ +Q + R A E + + + ++ L R Sbjct: 977 AE---DEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQR 1033 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 1034 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 1076 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 31/259 (11%), Positives = 87/259 (33%), Gaps = 17/259 (6%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + + E EL ++ +++ + Q + L+ ++ EH R Sbjct: 646 LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRG 705 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497 ++ + + +++ + + + R + L + + Sbjct: 706 LQEVSEQAEDLQRQLEELRAENEELRAEDENKTRGLQEVSEQAEDLQRQLEELRAENEEL 765 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 E + ++ + + + L L E + E + + E + L RQ+ Sbjct: 766 RAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 825 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615 + + A D +G Q+ ++ L RQ EE+ + ++ A+ E + Sbjct: 826 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQ 882 Query: 616 ILISILHEVHIQIHQIESQ 634 + ++ Q+ ++ ++ Sbjct: 883 EVSEQAEDLQRQLEELRAE 901 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + ++ + + + L L E + Sbjct: 812 QEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELR 871 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E + + E + L RQ+ + + A D +G Q+ ++ L R Sbjct: 872 AEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 928 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 929 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 971 Score = 44.9 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 41/415 (9%), Positives = 129/415 (31%), Gaps = 21/415 (5%) Query: 238 ETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSS 297 E + ++ + + +++ ++D +R+ + + + + +N Sbjct: 455 EKKIKNQQEMSRQLQQSKEEVKQLQQQDKKRDKENHGYKTQLEKMEEQMEEINNKNKTLK 514 Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 ++ L++ + + L + + + + R + + E Sbjct: 515 KSIEQKNQEIIELYEHAKDLQLQLEEMHAEIEQLRVENEELRAEDEHKTRGLQEVSEQAE 574 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK----NCIN 413 D + E + E +E L+ + Sbjct: 575 DLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTR 634 Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 +++ + Q + L+ ++ EH R ++ + + +++ + Sbjct: 635 GLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEE 694 Query: 474 ------------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 ++S++ + L + + E + ++ + + + L Sbjct: 695 LRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEDENKTRGLQEVSEQAEDLQRQ 754 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L E + E + + E + L RQ+ + + A D +G Q+ Sbjct: 755 LEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV 814 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 ++ L RQ EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 815 ---SEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 866 Score = 44.1 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + ++ + + + L L E + Sbjct: 952 QEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEELR 1011 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E + + E + L RQ+ + + A D +G Q+ ++ L R Sbjct: 1012 GEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEV---SEQAEDLQR 1068 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 1069 QLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAE 1111 Score = 37.6 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 30/234 (12%), Positives = 77/234 (32%), Gaps = 15/234 (6%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + + E EL ++ +++ + Q + L+ ++ EH R Sbjct: 891 LQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRG 950 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497 ++ + + +++ + + + R + L + + Sbjct: 951 LQEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEEL 1010 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 E + ++ + + + L L E + E + + E + L RQ+ Sbjct: 1011 RGEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQL 1070 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 + + A D +G Q+ ++ L RQ EE+ + ++ A+ E Sbjct: 1071 EELRAENEELRAEHEDKTRGLQEV---SEQAEDLQRQLEELRAENEELRAEHED 1121 >gi|189188632|ref|XP_001930655.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972261|gb|EDU39760.1| myosin type-2 heavy chain 2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 2305 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 30/260 (11%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL---RYYYSQAIRDRLQQLFQKYI 440 + +R + + L +K + + R Q + +++QQ + Sbjct: 776 RIIQRNFQVYLDLQSNPWWRLFARMKPMLGATRQAAEVKKRDEMIQQLEEKMQQ---EAA 832 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAI 497 + + + + +L K ++ K+ LREA L L I Sbjct: 833 ERQRVEDERRRAEMDIQRIQKTLESERALALDKEEIFKRLQLREAELSEKLAGAIEDQDQ 892 Query: 498 LQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554 L++Q L + E + L L +I +L E ++LD Sbjct: 893 LEDQLDALMEAKKKTEEEAEHLRRELEQA---------GQIISKLEGETQELEEQARRLD 943 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEAEK 613 Q+++ + + + Q + + L R+ +++E ++ K + + Sbjct: 944 EQLKELEVIKSQ----RSQAEEKLGQEIKMLTSHLALKERKLQDLEAKL----LKTDQDL 995 Query: 614 TAILISILHEVHIQIHQIES 633 L + + EV QI+ Sbjct: 996 DIKLAASVKEVQASKKQIKE 1015 Score = 41.8 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 40/374 (10%), Positives = 109/374 (29%), Gaps = 20/374 (5%) Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 +++ +A + E + + + ++ + ++ + L Sbjct: 1810 IAVLRASRAEQFAKSQAREAEETCAAIMAERKEMDSMVEDLQRTVQRYDERVEDLSTDLE 1869 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNT------ 397 + L + ED + E + ++ T+ Sbjct: 1870 TALQAKKRLQNELED-YRSQHAHDVEDSETSLEQTRKKYQSELASLTQEIDQERENVILV 1928 Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 +E L ++ N D+ L + RL+ Q + Sbjct: 1929 REENGRLREEIEELRNKWDDELLNSSTWAKEKSRLEMTLQTISDSRDEAANAHNEAQSKI 1988 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP-AILQEQYQELADIRYDNNELQ 516 R +++++ + ++ E L + + L + + + + Sbjct: 1989 VSLLSQVRTLRTNVDDLAAERDSAIEEKKRLESRLQEAADALDDLSRSESPAMRNAAAYD 2048 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + L S +Q+ + + + L++ R+A + +A + + Sbjct: 2049 RDLLELKSGLAQQEDITAAAVGKMRRAEALAQELQKDIVAEREANVKLHKDKAAVEKALK 2108 Query: 577 GYQQALALY----------KRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEV 624 Q L K R L+ + +E+EK + + +E + + ++ Sbjct: 2109 DLQLRLVDLETKGYSGSAGKDVRFLNGRIQELEKALENSESTRLSESRSVRNVDRTVRDL 2168 Query: 625 HIQIHQIESQEAMI 638 QI + + Q A + Sbjct: 2169 QTQIERRDKQNAAV 2182 >gi|15643303|ref|NP_228347.1| hypothetical protein TM0537 [Thermotoga maritima MSB8] gi|4981051|gb|AAD35622.1|AE001729_2 hypothetical protein TM_0537 [Thermotoga maritima MSB8] Length = 758 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 87/265 (32%), Gaps = 17/265 (6%) Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQ 434 P + E + L+ L + + I + + + L + Sbjct: 55 ENYRPWFSNRFGGYLETSEGRVEFGQGRLDPELFSFTSFISEGVDNTLNGSKKVASFLME 114 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 ++ N ++ L + + + +LLL L Sbjct: 115 SYRNRPEAVELERIL---NEDFSVLMKKTKELEAEISNLKERVEAWKEKRRSLLLVLKRK 171 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + ++ ++ ++L F +K I R+ E L +++ Sbjct: 172 KELSRDLQEK-----------RRLLEEEIDRFESEKSERLSSIEARINE--VKAELLRVE 218 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ + +A E + + + Q+ L +R L R+ E +E++ + + Sbjct: 219 KELEEIERETAVPEEKVREAIELAQKLDYLRERGEELKREIESLEEKSKDTEERLKTIMK 278 Query: 615 AILISILHEVHIQIHQIESQEAMIE 639 +S L E+ +++ ++ Q ++E Sbjct: 279 DFSVSSLEELKLKLENMKLQIELVE 303 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 20/205 (9%), Positives = 77/205 (37%), Gaps = 12/205 (5%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +R +L +L +++ + ++ + + + + ++ L + + Sbjct: 398 RLRKKLFELESEFMNLSTQKRSLIERKNQIVSKLKETAGVDNIEELEKFLRDQIVKKVFE 457 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 + L + + ++ + + ++++L + VE ++ + L E Sbjct: 458 RIPFLSKYGSEPRKAVENVE------EQMRELL--ILKSSVEASLSDKKKNLEELQE-YS 508 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 E + L +++ G+ +E + +R ++ L K L ++ + K+ ++ Sbjct: 509 REQEEVLKNTLKEIGV---DSEDKLKVLRDLLERRANLRKTRDSLEKEIANLMKEKEEIE 565 Query: 607 AKGEAEKTAILISILHEVHIQIHQI 631 + + L + ++ ++ ++ Sbjct: 566 SSRSNARIEELKREVEQIESELEKL 590 >gi|89897283|ref|YP_520770.1| hypothetical protein DSY4537 [Desulfitobacterium hafniense Y51] gi|89336731|dbj|BAE86326.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 482 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 21/185 (11%) Query: 6 DFIKDLLIHIPISNLIG----QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 F + +L+ Q R Y S S+ F Sbjct: 5 HFTDEQKQRANSVDLVDFLQRQGEQLTRSGREWRWQRYD-----------SVTVRGSQWF 53 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 + S G + F+ G SF E+V L GV K L Sbjct: 54 RH--SRKEGGHAIDFIQEFYGLSFPEAVTLLLGGEFGVEWNQSSKSAPPARKAFA-LPEA 110 Query: 121 IEVATDFFHHSLKNAR--DKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 F + +K + L ++ E+ + + D R R ++ + Sbjct: 111 NSDMRRVFAYLIKQRFISPEVLSHFAHEKLLYEDKTYHNAIFVGLDERSIARHAHKRGTY 170 Query: 179 SEEKI 183 ++ + Sbjct: 171 TQGEP 175 >gi|124007892|ref|ZP_01692593.1| replicative DNA helicase [Microscilla marina ATCC 23134] gi|123986654|gb|EAY26444.1| replicative DNA helicase [Microscilla marina ATCC 23134] Length = 514 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 16/183 (8%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 GK+ + E A+L L+ L + L + Q+++ +F F E + Sbjct: 2 GKVPPQVIELEEAVLGALMIEKDALTDIIDVLKPNSFYKPAHQEIYQAIFELFSESQPVD 61 Query: 534 PEEIHQRLCERGFGEL------LKQLDRQVRDAGLWSATTEANIVDVR---------QGY 578 + Q+L + E+ + +L V A + Sbjct: 62 MLTVTQQLRKMAKLEMVGGPSYIMKLTSMVNSAANIEYHARIITEQAIKRDLIAISSEIQ 121 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI-LHEVHIQIHQIESQEAM 637 ++A L + E+ I++ + ++ + E+ + Q + + Sbjct: 122 KEAFEDSSDVFTLLDKAEQALFDISENNIRKNYADMRTIMQDAIKELEERRDQKDGLTGI 181 Query: 638 IEG 640 G Sbjct: 182 PTG 184 >gi|58617318|ref|YP_196517.1| replicative DNA helicase [Ehrlichia ruminantium str. Gardel] gi|58416930|emb|CAI28043.1| Replicative DNA helicase [Ehrlichia ruminantium str. Gardel] Length = 486 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539 E LL ++ + + + + ++++ +F + Sbjct: 22 AEQILLGAMLRDNRVCDAVGDLITSEVFFDPLHRRIFEQIFKINKRGLIANELSLKMFFD 81 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLS 592 ++ L + A + + V ++ L + + + Sbjct: 82 NDEALTESGGVEYLAKIATKASIIFDIKNIANIVVDAYLRRCLISFGQDMITNAYNYDID 141 Query: 593 R----QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640 Q E +++ ++ +G+++ T ++ L E + +I +S E ++G Sbjct: 142 NPAVYQIENAAQKLFLLSNQGKSDNTYNKLAFLIENITKRIEFAKSNEGTLQG 194 >gi|57239298|ref|YP_180434.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden] gi|58579264|ref|YP_197476.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden] gi|57161377|emb|CAH58301.1| replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden] gi|58417890|emb|CAI27094.1| Replicative DNA helicase [Ehrlichia ruminantium str. Welgevonden] Length = 486 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 15/173 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539 E LL ++ + + + + ++++ +F + Sbjct: 22 AEQILLGAMLRDNRVCDAVGDLITSEVFFDPLHRRIFEQIFKINKRGLIANELSLKMFFD 81 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLS 592 ++ L + A + + V ++ L + + + Sbjct: 82 NDEALTESGGVEYLAKIATKASIIFDIKNIANIVVDAYLRRCLISFGQDMITNAYNYDID 141 Query: 593 R----QKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640 Q E +++ ++ +G+++ T ++ L E + +I +S E ++G Sbjct: 142 NPAVYQIENAAQKLFLLSNQGKSDNTYNKLAFLIENITKRIEFAKSNEGTLQG 194 >gi|322367864|ref|ZP_08042434.1| Patched family protein [Haladaptatus paucihalophilus DX253] gi|320552571|gb|EFW94215.1| Patched family protein [Haladaptatus paucihalophilus DX253] Length = 1255 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 30/236 (12%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q D L + + + K+ N + S+ L Q + + + Sbjct: 223 RGQTLQQRSDELNESKAQLQAKGQELQAQAKQLNESKAQLRNQSEELKQRAQELNESRAE 282 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 R+A L + L + +ELA N LQ+ + + E Sbjct: 283 LEQRQANLEVRA----QELNQTQRELAA---RNESLQERRATIEEAHQNGTINDTEY--- 332 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E+ L ++ D + + A D ++ A L +R L K E+E Sbjct: 333 ---EQRLDSLREEQAELKADQAQLANESAALQQDRQELEVDAQQLEQRAAELESDKAELE 389 Query: 600 K---QIAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639 + Q+ + + +AE+ L E+ +++ ++A +E Sbjct: 390 QQSEQLQESAGQLQAERAELEQRSAELQQEGKELQQAFSELQQDKKELQEKQAALE 445 Score = 42.2 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 27/265 (10%), Positives = 84/265 (31%), Gaps = 17/265 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 ++ ++ ++ EL+ + + + R + L Q Sbjct: 242 QAKGQELQAQAKQLNESKAQLRNQSEELKQRAQELNESRAELEQRQANLEVRAQELNQTQ 301 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 ++ + + + L + + + A L N A Sbjct: 302 RELAARNESLQERRATIEEAHQNGTINDTEYEQRLDSLREEQAELKADQAQLA---NESA 358 Query: 497 ILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQ-----RLCERGFGEL 549 LQ+ QEL + Q+L + + E++ + + + Sbjct: 359 ALQQDRQELEV------DAQQLEQRAAELESDKAELEQQSEQLQESAGQLQAERAELEQR 412 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 +L ++ ++ + + + ++++ A ++ + Q +E +++ + + + Sbjct: 413 SAELQQEGKELQQAFSELQQDKKELQEKQAALEADSQQLKERGAQLKEDSQRLQEDSQEL 472 Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634 E A L + ++ + Q++ Q Sbjct: 473 -KEAQAELENDSEQLKEEGQQLQEQ 496 Score = 39.1 bits (89), Expect = 2.2, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 92/281 (32%), Gaps = 15/281 (5%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +D + E E++ + E L ++ Sbjct: 204 QDLQQRGEELKEEGQELKQRGQTLQQRSDELNESKAQLQAKGQELQAQAKQLNESKAQLR 263 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +Q + + ++ + + R + S + ++++ + Sbjct: 264 NQSEELKQRAQELNESRAELEQRQANLEVRAQELNQTQRELAARNESLQERRATIEEAHQ 323 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + E + L +E A+++ D +L S ++ ++ Sbjct: 324 NGTINDTE---------YEQRLDSLREEQAELKADQAQLAN-ESAALQQDRQELEVDAQQ 373 Query: 537 IHQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + QR E EL +Q ++ AG A + Q+ L + F L + Sbjct: 374 LEQRAAELESDKAELEQQSEQLQESAGQLQAERAELEQRSAELQQEGKELQQAFSELQQD 433 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 K+E++++ Q + ++++ + L E ++ + +SQE Sbjct: 434 KKELQEK--QAALEADSQQLKERGAQLKEDSQRLQE-DSQE 471 >gi|146344100|ref|YP_001201956.1| putative DNA primase [Pseudomonas fluorescens SBW25] gi|146187912|emb|CAM96241.1| putative DNA primase [Pseudomonas fluorescens SBW25] Length = 462 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 57/371 (15%), Positives = 103/371 (27%), Gaps = 31/371 (8%) Query: 81 LGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI-----QTDLIRLIEVATDFFHHSLKNA 135 G S + V+ L AGV P K++ + L A L Sbjct: 82 NGMSNGDIVKTLCESAGVEPPDNRDNEAKQQSRAANGGRPPL--TTGQAIILVTQQLAQR 139 Query: 136 RDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNS 195 L + RG + + +LG ++ L E+ + + + Sbjct: 140 NKGILDEFQQSRGYTNEVMATLRLGVFTNNDEVLSLLQAHGITREQARSIGIVSFEDETP 199 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 ++ + R+I G+ + GR P + Y F Sbjct: 200 SSVWSGMEGRVIGYWPHPDGEARIW-GRI------------PSGQGEARSNPKYRFS--- 243 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLL-WKLS 314 K I ++ S ++ VEG +D +L V + ++ Q L + Sbjct: 244 PKSSKDIPYLFKQRQKSILVCVEGTLDAWALQLIKV-WGCAIGQASINSAQAAYLASQGI 302 Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 DGD G A +I G ++ + L RG D +R G+ K Sbjct: 303 TEAAHMVDGDHAGYEGALSSIREAE---AVGITLSIIALGRGMDDADAMRTAGREDALKA 359 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 ++ S R + ++ N + R + L Sbjct: 360 LINSRMNAGEYMARYCASLLDQPL-PDLRRVAKIRAIANGLTTASKRKWL--DFSQSLGI 416 Query: 435 LFQKYITEHSG 445 + Sbjct: 417 AADEESDALRA 427 >gi|269797037|ref|YP_003316492.1| primary replicative DNA helicase [Sanguibacter keddieii DSM 10542] gi|269099222|gb|ACZ23658.1| primary replicative DNA helicase [Sanguibacter keddieii DSM 10542] Length = 461 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/149 (10%), Positives = 45/149 (30%), Gaps = 10/149 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + + ++L + + ++ + + + Sbjct: 26 RTPPQDIAAEQSVLGGMLISKDAIADVIEQLKGTDFYRPAHEAIYDTILDLYGRGEPADA 85 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L + G + ++ L S A A R R + R+ Sbjct: 86 ITVVAELTKHG---EMGRIGGAPYIHTLISMVPTAAN-------AGYYARIVRERAVLRR 135 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 + +I Q+ + L++ Sbjct: 136 LVQAGTRIVQLGYATDGGDVDELVNNAQA 164 >gi|258655293|ref|YP_003204449.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233] gi|258558518|gb|ACV81460.1| ATP-dependent chaperone ClpB [Nakamurella multipartita DSM 44233] Length = 874 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/205 (10%), Positives = 71/205 (34%), Gaps = 3/205 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++++I + R +++ + +++ + + + ++AL+ Sbjct: 322 YREHIEKDPALERRFQQVFVGEPSVEDTIGILRGIKERYEAHHGVRIADSALVSAATLSD 381 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + ++ I + +L + S VE ++ E + L + Sbjct: 382 RYITSRFLPDKAIDLIDEAASRLRMEIDSRPVEIDELQRAVDRLKMEELALEKELDAASQ 441 Query: 556 QVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + + +++ + R L ++ +E+ Q + +G+ K Sbjct: 442 DRLTRLRRDLADRSEQLTAMNERWEREKSGLNRVGELKKELDELRMQADRFQREGDLAKA 501 Query: 615 AILI-SILHEVHIQI-HQIESQEAM 637 + L+ + + + ++ I + EA Sbjct: 502 SELLYARIPALERELSQAISADEAA 526 >gi|87200224|ref|YP_497481.1| genomic island protein [Novosphingobium aromaticivorans DSM 12444] gi|87135905|gb|ABD26647.1| conserved hypothetical genomic island protein [Novosphingobium aromaticivorans DSM 12444] Length = 312 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67 CCP HD++TPS + ++CF C Sbjct: 45 MCCCPAHDDRTPSLSVTLGRKAILFHCFAGC 75 >gi|103485935|ref|YP_615496.1| virulence-associated protein E [Sphingopyxis alaskensis RB2256] gi|98976012|gb|ABF52163.1| virulence-associated protein E [Sphingopyxis alaskensis RB2256] Length = 309 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 3/31 (9%) Query: 40 WACCPFHDEKTPSFHCNDSKG--FYYCF-SC 67 CCP HD++TPS + ++CF C Sbjct: 31 MCCCPAHDDRTPSLSVTLGRKAILFHCFAGC 61 >gi|313836451|gb|EFS74165.1| replicative DNA helicase [Propionibacterium acnes HL037PA2] gi|314929064|gb|EFS92895.1| replicative DNA helicase [Propionibacterium acnes HL044PA1] gi|314970989|gb|EFT15087.1| replicative DNA helicase [Propionibacterium acnes HL037PA3] gi|328906648|gb|EGG26423.1| replicative DNA helicase [Propionibacterium sp. P08] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/153 (13%), Positives = 54/153 (35%), Gaps = 10/153 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S ++ + + E ++L +++ + + +E+ + + + +++ + Sbjct: 2 SSAPVEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + L RG +L+R L T + Y + + Sbjct: 62 TDLYGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIV 115 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 A + + R+ E +IAQ+ +G+ E + Sbjct: 116 AD----KAVLRRLVEASIRIAQMGYQGQGEVSD 144 >gi|194041277|ref|XP_001924306.1| PREDICTED: TATA element modulatory factor [Sus scrofa] Length = 1016 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/281 (11%), Positives = 85/281 (30%), Gaps = 20/281 (7%) Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 ED I+ + +L + + + + Sbjct: 443 EKEDVCKEIKSMKEELATRLNSSETSDLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKL 502 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 K + ++++L ++ + +HRD Sbjct: 503 RAKDKENENIIAKLNKKVKELEEELQHLKQVLDGKEEVEKQHRDNIK------------- 549 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL+ +E L ++ + ++ A + EL L + + Sbjct: 550 KLNSVVERQEKDLGRLQLDMNELEEKNRSIQAALDSAYKELTDLHKA---NAAKDSEAQE 606 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSR 593 + + + + EL L++ +A T + D+R Q+A A ++ L Sbjct: 607 AALSREMRAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQRAEQAAARKEDYLRH 664 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E+++++ + + E + + S + QI +++ Sbjct: 665 EISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 704 >gi|291303700|ref|YP_003514978.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728] gi|290572920|gb|ADD45885.1| replicative DNA helicase [Stackebrandtia nassauensis DSM 44728] Length = 441 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 9/141 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 SS + L E ++L ++ ++ E EL + + + Q +++ + F Sbjct: 3 SSEPIEAVPPHEQLAEQSVLGAMLYSANVIAELVPELTGHDFYDPKHQLVFAAICDMFAA 62 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 I L +R +L R + + A AL + + Sbjct: 63 GTPVDAVSIVDELNKR------DELRRVGGAPYIHTLLRAAASAGSASY--HALRI-VKP 113 Query: 589 RLLSRQKEEIEKQIAQVTAKG 609 + L R+ E +I Q+ +G Sbjct: 114 KALQRRLIEAGIRIQQLGYRG 134 >gi|68172019|ref|ZP_00545312.1| DnaB-like helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa] gi|67998556|gb|EAM85316.1| DnaB-like helicase, N-terminal [Ehrlichia chaffeensis str. Sapulpa] Length = 239 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539 E LL +++ I + + ++ ++++ + + Sbjct: 24 AEQILLGSMLRDNRICDAVEDIITSDVFFDSLHRRIFEQIVKINKRGLVANEVSLKMFFD 83 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588 + + L + A + + V ++ L + + Sbjct: 84 NDEDLIESGGVDYLAKIAAKASIIFDIKNVANIVVDTYLRRCLISFGQDLISGAYNYDVD 143 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640 Q E +++ + +G+++KT ++L + +I ++ E ++G Sbjct: 144 NSAVYQIESAAQKLFLLGNQGKSDKTYHQFALLVANIKKRIEFAKNNEGTLQG 196 >gi|172038318|ref|YP_001804819.1| replicative DNA helicase [Cyanothece sp. ATCC 51142] gi|171699772|gb|ACB52753.1| replicative DNA helicase [Cyanothece sp. ATCC 51142] Length = 447 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/185 (15%), Positives = 61/185 (32%), Gaps = 15/185 (8%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 V L + E ++L ++ P + + + + ++ + + Sbjct: 5 VNQTLPPQNIEAEESILGGILLDPEAMGRVVDLITPEAFYIQSHKDIYHAALKLHGQGQP 64 Query: 532 FLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L + G +L + LDR V + T +R+ A Sbjct: 65 TDFLTVKSTLEDHHLLEKIGGLNKLTQLLDRTVSAVNIDRYATLVMDKYLRRQLIAAGHE 124 Query: 585 YKRF-----RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM-- 637 + L +E EK+I +T K E + + + ++ ++ Q A+ Sbjct: 125 IVDLGFETTQELEIVLDESEKKIFALTQKRPQEGLIPISDTIIKTFNELEKLHEQTALPG 184 Query: 638 IE-GF 641 IE GF Sbjct: 185 IETGF 189 >gi|296133562|ref|YP_003640809.1| chromosome segregation protein SMC [Thermincola sp. JR] gi|296032140|gb|ADG82908.1| chromosome segregation protein SMC [Thermincola potens JR] Length = 1189 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 26/245 (10%), Positives = 78/245 (31%), Gaps = 14/245 (5%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 + + + ++ + +++ L ++ Y Y ++ + Sbjct: 170 YKNRKLQAARKLEDTEQNMVRINDIIAELENQVGPL-EEQANRAKTYIGYKEELDKLEIN 228 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 Q Q ++ ++ LR+ ++ E + + N ++ L Sbjct: 229 LAVHQLTDQKDRLETLTGEEAKLRQ-DIIALETEVRKTDSEIEELKHHLHLTNEDINNLQ 287 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 +F + + + E ++L ++ + A A R + Sbjct: 288 QDIFEKSSAIEKLEADIRINGERNKNLKERQERLQAEINELSGKQA---AIREQSRGEME 344 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKG-----EAE----KTAILISILHEVHIQIHQ 630 L R + + E+E Q+ ++ A + E + ++ ++ ++H Sbjct: 345 SYEKLVHNIRTMETELAELEAQLRELEADNRSKIDDIEQAKGEIIDTLNETAALNNRLHA 404 Query: 631 IESQE 635 +E++E Sbjct: 405 LEAEE 409 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 32/234 (13%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLR 483 I + + I E +G +Y + + R + Q +++ + + +L + Sbjct: 146 IDEILSSKSEDRRLIIEEAAGIVKYKNRKLQAARKLEDTEQNMVRINDIIAELENQVGPL 205 Query: 484 EAAL--LLTLINHPAILQEQYQELADIRYDNNELQ---------KLWSFLFSDFVEQKYF 532 E T I + L + LA + + + + KL + + E + Sbjct: 206 EEQANRAKTYIGYKEELDKLEINLAVHQLTDQKDRLETLTGEEAKLRQDIIALETEVRKT 265 Query: 533 L--PEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 EE+ L L + + + A N + L +R Sbjct: 266 DSEIEELKHHLHLTNEDINNLQQDIFEKSSAIEKLEADIRINGERNK-------NLKERQ 318 Query: 589 RLLSRQKEEI--EKQIAQVTAKGEAEKTAILIS-------ILHEVHIQIHQIES 633 L + E+ ++ + ++GE E L+ L E+ Q+ ++E+ Sbjct: 319 ERLQAEINELSGKQAAIREQSRGEMESYEKLVHNIRTMETELAELEAQLRELEA 372 >gi|298674540|ref|YP_003726290.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303] gi|298287528|gb|ADI73494.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303] Length = 880 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 76/220 (34%), Gaps = 23/220 (10%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K I + + R + + +++ + ++ ++++AL+ + Sbjct: 321 YRKNIEKDAALERRFMPVMVGEPDVEDTISILRGLKERYEVHHGVRIKDSALVEAAVLSD 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547 + E++ I + + + + S + + + Sbjct: 381 RYISERFLPDKAIDLVDEAAANVRTQIDSKPTQLDEVDRKITQLEIEREALKKETDPASK 440 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L+ L++++ + S T +R+ +Q+ + R Q E+ + Q+ + Sbjct: 441 ERLESLEKELSNIREQSKT-------LREQWQKEKEIISELRSFKEQIEDTKTQLERAEN 493 Query: 608 KGEAEKTAIL--------ISILHEVHIQIHQIESQEAMIE 639 + E + L E ++HQ++ + + E Sbjct: 494 DNDFELASRLKYGTLIPLQRQYEEKEEELHQMQDEMLLRE 533 >gi|115378658|ref|ZP_01465808.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|310823081|ref|YP_003955439.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|115364324|gb|EAU63409.1| replicative DNA helicase [Stigmatella aurantiaca DW4/3-1] gi|309396153|gb|ADO73612.1| Replicative DNA helicase [Stigmatella aurantiaca DW4/3-1] Length = 459 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/179 (11%), Positives = 63/179 (35%), Gaps = 31/179 (17%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 +G+ + E A+L ++ +++ + +A + + +++ + Q+ Sbjct: 9 EGRRVHEDLAAERAVLGAVLADNSLIASVAEVVASDDFSSPAHSAIFAAMLKLDGSQRSV 68 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL---ALYKRFR 589 + + L +L QL A L + + Y + + A+ +R Sbjct: 69 DHLTLSEELK------VLGQLAAVGGPAYLMTLDQVVPLASNAVQYAKIVSDQAIRRRLA 122 Query: 590 LLSRQKEEIEKQ------------------IAQVTAKGE----AEKTAILISILHEVHI 626 ++ R+ E+ Q +A+ +G+ ++ +++L ++ Sbjct: 123 VVGREILEMASQETGDVEVVVDEAARKMFLLAEKRREGDLLPVSDLMEQTLNLLDKMKA 181 >gi|331006890|ref|ZP_08330139.1| putative transposon-like/mobilization protein [gamma proteobacterium IMCC1989] gi|330419306|gb|EGG93723.1| putative transposon-like/mobilization protein [gamma proteobacterium IMCC1989] Length = 322 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 17/113 (15%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWA------CCPFHD-EKTPSFHCNDSKGFYYCF 65 I I + + + Y P D +KTPSF N K ++ Sbjct: 7 ETISIVDY------LSYKGIYPTEKRYKGGSEIRYYSPIRDSDKTPSFDVNIEKNVWFDL 60 Query: 66 SCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 V G + + + G S ++++ + G+ + + + L Sbjct: 61 GASVGGGLVRGVQEMYGFSVSQALEDI-ERTGL---YKQGQTYSPSEPEKILY 109 >gi|323342376|ref|ZP_08082608.1| replicative DNA helicase DnaB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463488|gb|EFY08682.1| replicative DNA helicase DnaB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 456 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 59/179 (32%), Gaps = 13/179 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E ALL TL+ P + + ++ + N E QK++S + + Sbjct: 2 RKLPYSQDAEMALLGTLLVFPESVAVVEEYDMQVDDFYNTEHQKIFSHMLEIIERGRVLD 61 Query: 534 PEEIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + RL + L + E + Q++A Sbjct: 62 ATTLITRLKDQHEIDSVGGVEYLFALTENSATPASVKHYIEVVQEKAQMRRLIDVGQSIA 121 Query: 584 L--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + L+ +E E++I +VT + +++EV +++I I G Sbjct: 122 EKGFDSTTELTALLDEAEQRILEVTRVRRTTEMQRSREVVNEVMENLNRIRDNHDRITG 180 >gi|314965964|gb|EFT10063.1| replicative DNA helicase [Propionibacterium acnes HL082PA2] gi|315095192|gb|EFT67168.1| replicative DNA helicase [Propionibacterium acnes HL060PA1] gi|327328820|gb|EGE70580.1| replicative DNA helicase [Propionibacterium acnes HL103PA1] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + E ++L +++ + + +E+ + + + +++ + Sbjct: 5 PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L RG +L+R L T + Y + +A Sbjct: 65 YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + R+ E +IAQ+ +G+ E Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141 >gi|310765425|gb|ADP10375.1| hypothetical protein EJP617_06940 [Erwinia sp. Ejp617] Length = 457 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 60/172 (34%), Gaps = 14/172 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ + ++ + + + ++ + + + + + Sbjct: 19 AEQCVIGGLMLDNDSWDDVAMLISAEDFSYSVHRVIFHEMTRLVSAGRPIDLVTLAESIE 78 Query: 543 ERGFGEL--------LKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFR- 589 RG +L L +L + + A +E + + + Sbjct: 79 SRGKDKLDQIGGFAYLAELSKNIPSAANIVPYSEIVAKYSRARQLAAIGTEITDSVKAPG 138 Query: 590 -LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 +++ EE E++I ++ + E ++ ++ L ++ I++ + + I G Sbjct: 139 ADIAQVMEEAEQKITRLAERAEPQQAVTIVDGLEKLFIELERRCNTPDGITG 190 >gi|300712816|ref|YP_003738628.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] gi|299126500|gb|ADJ16837.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] Length = 640 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 55/158 (34%), Gaps = 13/158 (8%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + QE+ + ++ EL S E+ + + +L+ Sbjct: 353 DLRQEKVERRNELSRKLEELTAQRKEYTSTRDERAELERALETAETELADRTDRISELEA 412 Query: 556 QVRDAGLWSA------TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 + + + + + D+ ++ L + L R++ + + I + ++ Sbjct: 413 RREELLAETEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIESLESQL 472 Query: 610 EAEKT-----AILISILHEVHIQIHQIESQEAMIEGFG 642 + ++ + + L E+ +I +IE + IE F Sbjct: 473 DEQEQLEARREEINTELEELRTRIERIERE--AIEAFN 508 >gi|269792687|ref|YP_003317591.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100322|gb|ACZ19309.1| ATP-dependent chaperone ClpB [Thermanaerovibrio acidaminovorans DSM 6589] Length = 871 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 71/201 (35%), Gaps = 2/201 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + R ++ + +++ + ++ +++ AL+ + Sbjct: 324 YRKYIEKDPALERRFQPVLVEAPDVEDTVSILRGLKERFEVHHGVRIQDGALVAAAVLSN 383 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554 + ++Y I + + + + S E + + + E E Sbjct: 384 RYITDRYLPDKAIDLVDEACAHIRTEIDSMPAELDQAVRRVMQLEIEEAALSKETDPASA 443 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 +++ A +R Y++ + R + + EE +++I + + Sbjct: 444 KRLEALRRELAEARNEADALRAQYEREKSAIGEIRAIRERIEETKRRIEEAERTYDLNLA 503 Query: 615 AIL-ISILHEVHIQIHQIESQ 634 A L L ++ ++ Q E++ Sbjct: 504 AQLKHGELPKLTRELAQKEAE 524 >gi|241766421|ref|ZP_04764297.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN] gi|241363400|gb|EER58901.1| ATP-dependent chaperone ClpB [Acidovorax delafieldii 2AN] Length = 868 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 81/208 (38%), Gaps = 4/208 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ K ++ + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKILVGEPTVEATIAILRGLQEKYEVHHGVEITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553 I + I + K+ + S I ++ + Sbjct: 377 RYITDRFLPD-KAIDLIDEAASKIKIEIDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++ A+ + I D+ + +Q A + + + Q E++++QI ++ KG+ K Sbjct: 436 QKRFGLIEEEIASLQKEIADLDEIWQSEKAQAQGSQQVREQVEQVKQQIEELKRKGDFNK 495 Query: 614 TAIL-ISILHEVHIQIHQIESQEAMIEG 640 A L L ++ Q+ + +++E +G Sbjct: 496 VAELQYGKLPDLEKQLKEAQAKEEGKDG 523 >gi|154488139|ref|ZP_02029256.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis L2-32] gi|154083612|gb|EDN82657.1| hypothetical protein BIFADO_01710 [Bifidobacterium adolescentis L2-32] Length = 909 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 2/143 (1%) Query: 496 AILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++ E L ++ E+ +L + +E+ Y L + + E+ EL Sbjct: 398 DLVDEAAAHLRMELDSSPEEIDELRRQVDRLKMEKSYLLGNPKNDKAAEKAEAELDDSAK 457 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ D A + ++ + + R L ++ +E+ Q + +G+ K+ Sbjct: 458 DRLADLNQEIADKSEKLNGLKARWDAEKNGHNRIGDLRKKLDELRTQAEKYEREGDLAKS 517 Query: 615 AIL-ISILHEVHIQIHQIESQEA 636 + + + + +I Q E EA Sbjct: 518 SAINYGEIPAIQKEIAQAEKNEA 540 >gi|282854526|ref|ZP_06263862.1| replicative DNA helicase [Propionibacterium acnes J139] gi|282582387|gb|EFB87768.1| replicative DNA helicase [Propionibacterium acnes J139] gi|315105310|gb|EFT77286.1| replicative DNA helicase [Propionibacterium acnes HL050PA2] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + E ++L +++ + + +E+ + + + +++ + Sbjct: 5 PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L RG +L+R L T + Y + +A Sbjct: 65 YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + R+ E +IAQ+ +G+ E Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141 >gi|317501420|ref|ZP_07959619.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897164|gb|EFV19236.1| TnpY protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 623 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 F + S G + F+ G SF E+VQ L Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLL 79 >gi|312885883|ref|ZP_07745515.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] gi|311301690|gb|EFQ78727.1| conserved hypothetical protein [Mucilaginibacter paludis DSM 18603] Length = 302 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFI-----ESVQRLAA 94 W P EKT SF ++ + V GD + + L S + ++++ L Sbjct: 31 WYLSPRRIEKTASFQVCYKTNRWHDWGDGVHGDGIDLVRFHLNQSGVNDTVADALRWLGN 90 Query: 95 IAG 97 + G Sbjct: 91 MIG 93 >gi|283768423|ref|ZP_06341335.1| replicative DNA helicase [Bulleidia extructa W1219] gi|283104815|gb|EFC06187.1| replicative DNA helicase [Bulleidia extructa W1219] Length = 454 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 12/169 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E + L T++ +P + L + + Q ++ L + Sbjct: 2 ARKLPTVPDIEKSFLGTILLYPEGNHQVLDSLEEQDFFEERHQYVFRILKKLREKGIPSE 61 Query: 534 PEEIHQRLCERGFGELL----------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + L + +L+ + + E I +A+A Sbjct: 62 IPSVQSALEDEKLLDLVGGFHYLLELQESAISYNKPEQFVPTLKEKRIQREMIQASEAIA 121 Query: 584 L--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 Y+ L E E+ I ++ EA +I + E+ ++ + Sbjct: 122 EKGYEGVSDLGEYLSEAEEYILRIARSREAGGFKDMIQTMDELKNELKR 170 >gi|326803886|ref|YP_004321704.1| chromosome segregation protein SMC [Aerococcus urinae ACS-120-V-Col10a] gi|326650714|gb|AEA00897.1| chromosome segregation protein SMC [Aerococcus urinae ACS-120-V-Col10a] Length = 1186 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 24/232 (10%) Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + ++ + +R +LQ + Q+ S K+ A + + + ++S+ + Sbjct: 289 NYVVKLQAVEKLRSQLQMMEQEQRFIQSNRQSQEKEQANLQAKIEKMKTDLKSNQAQLDK 348 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADI-RYDNNELQKLWSFLFSDFVEQKYFLPE 535 +K +A Q +LA + Y +L+ L + + E+ Sbjct: 349 YQKTYQSQA----------DSYQSLKDQLAALSDYSQEDLEDLRNQYIAYLQEE-----S 393 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTE-ANIVDVRQGYQQALALYKRFRLLSRQ 594 + ++ + Q +++ + + E A + D ++G Q ++ ++ + L Sbjct: 394 HLSNQIQQTEKDIQQGQKNQEKYAERIRISQKEQAKLEDQQEGLDQEIS--QKEQALKNL 451 Query: 595 KEEIEKQIAQVTAKGEA-----EKTAILISILHEVHIQIHQIESQEAMIEGF 641 +E + Q + + L L Q+ +++ E EGF Sbjct: 452 LQEYQIQAQSLQQAQDQVQKATNANQTLYQKLLRKQAQLDSLKNLEDNHEGF 503 >gi|270308657|ref|YP_003330715.1| hypothetical protein DhcVS_1287 [Dehalococcoides sp. VS] gi|289433174|ref|YP_003463047.1| hypothetical protein DehalGT_1232 [Dehalococcoides sp. GT] gi|270154549|gb|ACZ62387.1| hypothetical protein DhcVS_1287 [Dehalococcoides sp. VS] gi|288946894|gb|ADC74591.1| hypothetical protein DehalGT_1232 [Dehalococcoides sp. GT] Length = 701 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 22/128 (17%) Query: 27 WDRRKTNAVKGDYWACCPFHDE-KTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 ++ G Y + CPFH++ TP+ GFY C +C KG Sbjct: 12 LEKVSGPDKNGWYTSLCPFHNDQTTPNLRFT-ENGFY-CLACGEKG-------------- 55 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATD-FFHHSLKNARDKRLHYYL 144 S+ +LA GV K + + + + F + + Sbjct: 56 --SLSKLANKLGVSFYPDSSTSH--NKKISSIYDYRDENSKLLFQVVRYTPKAFNQRHPN 111 Query: 145 DERGIDSH 152 + G + Sbjct: 112 GKGGWIYN 119 >gi|239994127|ref|ZP_04714651.1| replicative DNA helicase [Alteromonas macleodii ATCC 27126] Length = 461 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 10/143 (6%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 S ++ K K+ E ++L +++ P + + + D + N Q ++ Sbjct: 2 ASASKNDKNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDNDFYNRSHQIIFRA 61 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + L + +L+ A L Y Q Sbjct: 62 ITRLLNSSQPIDLITVSEELEKH------DELEDAGGFAYLGELAKNTPSSANVVSYAQI 115 Query: 582 LALYKRFRLLSRQKEEIEKQIAQ 604 ++ R ++R+ + +IA+ Sbjct: 116 IS----ERAITRELIGVAHEIAE 134 >gi|221635912|ref|YP_002523788.1| von Willebrand factor type A [Thermomicrobium roseum DSM 5159] gi|221157714|gb|ACM06832.1| von Willebrand factor type A [Thermomicrobium roseum DSM 5159] Length = 699 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 39/235 (16%) Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 D L+ + + +L L Q + + Q L+ S + Sbjct: 149 DPALQRLLERMAQQKLAFLDQLPADPAGRIRALSDYEFMDPEARRKFQELLASLQRQVLE 208 Query: 477 SKKPSLREAALLLTLINH--PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 L++A I + P L+E Q L D+ + L + + Sbjct: 209 QTFQGLQQA------IQNVTPEALRELRQMLRDL-----------NELLREHAQGGQPDL 251 Query: 535 EEIHQRLC---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E R R F + + LD R + ++ ++RQ +QAL R L Sbjct: 252 ERFKHRWGHYFGRDFNSVDELLDHLARQMAAVQSLLDSLPPEMRQQLEQALEAALRDPEL 311 Query: 592 SRQKEEIEKQIAQVTAK----------GEAE-------KTAILISILHEVHIQIH 629 ++ ++ + + Q+ + G E + + + ++ Q+ Sbjct: 312 QQELRQLGRLLGQLMPENPYRQAQPFSGSEELTLSQALRLMEQLREMQDIEEQLE 366 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 24/232 (10%), Positives = 68/232 (29%), Gaps = 25/232 (10%) Query: 425 SQAIRDRLQQLFQ------KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + RL ++ Q + + + + + QS+ + Sbjct: 87 LDDLNQRLDEVIQTERAGIERRVQEGRERLARARERVAPVSEAGEEGQTQSNEGETGDDA 146 Query: 479 KPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLWSFLFSDFV--- 527 LL + + + + L+D + + E ++ + L + Sbjct: 147 PTDPALQRLLERMAQQKLAFLDQLPADPAGRIRALSDYEFMDPEARRKFQELLASLQRQV 206 Query: 528 -EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 EQ + ++ Q + EL + L + + ++ + + Sbjct: 207 LEQTFQGLQQAIQNVTPEALRELRQMLRDLNELLREHAQGGQPDLERFKHRWGHYFGRDF 266 Query: 587 R-----FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQI 631 L+RQ ++ + + + + L + L E+ ++ Q+ Sbjct: 267 NSVDELLDHLARQMAAVQSLLDSLPPEMRQQLEQALEAALRDPELQQELRQL 318 >gi|317484321|ref|ZP_07943242.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6] gi|316924399|gb|EFV45564.1| replicative DNA helicase [Bilophila wadsworthia 3_1_6] Length = 449 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ + ++ E A+L LI P+ + + L + Q L++ Sbjct: 7 TATTDLARRVPPHSVEAERAVLAGLILRPSAMGQIAPMLHPEDFYLPAHQTLYAAALGLH 66 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + + + L ++G L++ A + + V + A Sbjct: 67 TDNRPVDLVTLAEHLRDQG------SLEQAGGAAYI----ADLAQSHVSAANAEYYAKLV 116 Query: 587 RFRLLSRQKEEIEKQI 602 R + + R E +I Sbjct: 117 RDKSIQRGLIEAGAKI 132 >gi|313808581|gb|EFS47041.1| replicative DNA helicase [Propionibacterium acnes HL087PA2] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/188 (10%), Positives = 54/188 (28%), Gaps = 19/188 (10%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S + + + E ++L +++ + + +E+ + + + +++ + Sbjct: 2 SSAPAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTI 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERG----------FGELLKQL---------DRQVRDAGLW 563 + L RG ELL + + V + + Sbjct: 62 TDLYGRGDPADTVTTADELDRRGELGRAGGRLYLAELLTNVTVTANAAYYAKIVAEKAVL 121 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 EA+I + GYQ + + ++ + +E L Sbjct: 122 RRLVEASIRIAQMGYQGQGEVADIVDAAQQTLYDVSTRKTSEEYHPLSELFESTFDELEA 181 Query: 624 VHIQIHQI 631 + + + Sbjct: 182 IEARGDAM 189 >gi|314980713|gb|EFT24807.1| replicative DNA helicase [Propionibacterium acnes HL110PA3] gi|315090968|gb|EFT62944.1| replicative DNA helicase [Propionibacterium acnes HL110PA4] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + E ++L +++ + + +E+ + + + +++ + Sbjct: 5 PAEPGPSLDRNPPQDIDAEKSVLGAMLSSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L RG +L+R L T + Y + +A Sbjct: 65 YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + R+ E +IAQ+ +G+ E Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141 >gi|332529046|ref|ZP_08405011.1| ATPase [Hylemonella gracilis ATCC 19624] gi|332041490|gb|EGI77851.1| ATPase [Hylemonella gracilis ATCC 19624] Length = 874 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 27/200 (13%), Positives = 77/200 (38%), Gaps = 4/200 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ K ++ + + A++ ++H Sbjct: 318 YRKYIEKDAALERRFQKVLVEEPTVEQTIAILRGLQEKYEVHHGVDITDPAIVAAAELSH 377 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQL 553 I + I + K+ + S I ++ E + Sbjct: 378 RYITDRFLPD-KAIDLIDEAAAKIKIEIDSKPEVMDKLDRRMIQLKIEREAMKKETDEAS 436 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 +++ + D+ + ++ A + + L + E+++ QI ++T KG+ + Sbjct: 437 QKRLALIEEEIGKLQKEAADLEEIWKLEKAQAQGGQHLREEIEKLKGQIEELTRKGDFNR 496 Query: 614 TAIL-ISILHEVHIQIHQIE 632 A L L E+ ++++++ Sbjct: 497 VAELQYGKLPELEKRLNEVQ 516 >gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551] gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551] Length = 1198 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 82/229 (35%), Gaps = 9/229 (3%) Query: 407 HLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 L+ I D + R Q IRD QL E + ++ + Sbjct: 696 RLERLAVEISDLEDDRREIEQEIRDIESQLDDA--REKASDAADRVRSVEADIDRAEEDV 753 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFS 524 + + ++ + LRE + L L ADI +E+ +L S L Sbjct: 754 EEKKAEIEQLEDRIEELREKR--AEVDEEMQSLDTDIDALTADIDDVQSEIDELESELAD 811 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + +EI + E+ + +LD ++ + L E I D+ + + A Sbjct: 812 SKIPELTAQADEIRAEIEEKEDR--MDELDGRLNELQLEKEYAEDAIEDLNETVESAQDR 869 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R + R+KE+ ++ + + + E + L + L E+ + + Sbjct: 870 KADARDVIREKEQAIEE-KEAVLEEKREAVSDLEAELKELKAERSDLRE 917 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 15/141 (10%), Positives = 52/141 (36%), Gaps = 7/141 (4%) Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 E++D+ ++ +++ + + + R + + + V + Sbjct: 703 EISDLE---DDRREIEQEIRDIESQLDDAREKASDAADRVRSVEADIDRAEEDVEEKKAE 759 Query: 564 SATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 E I ++R+ + + L+ ++++ +I ++ ++ K L + Sbjct: 760 IEQLEDRIEELREKRAEVDEEMQSLDTDIDALTADIDDVQSEIDELESELADSKIPELTA 819 Query: 620 ILHEVHIQIHQIESQEAMIEG 640 E+ +I + E + ++G Sbjct: 820 QADEIRAEIEEKEDRMDELDG 840 Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 76/243 (31%), Gaps = 28/243 (11%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 L++ I++ LR + RL QL + T ++ K Sbjct: 202 ELESVEERIEEADLR---IEEKESRLDQLEDERETALKYQSLREEREEYEGYLKAAELED 258 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 ++ L + + + + L L + ++ + EL +L + Sbjct: 259 KRADLERTESKAETKAEKLESLR------EELDTRQGRVSRLE---AELDELSKEIERKG 309 Query: 527 VEQKYFLPEEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 +++ + EI RL ++D + + + Sbjct: 310 EDEQLRIKSEIESVKGEIDRLENA-IEAAEDRIDEAETERRKAFVELDRKQEMIDDVEDD 368 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGE---------AEKTAILISILHEVHIQIHQI 631 A+ + + + E ++A+V A+ + ++ A S L E+ + + + Sbjct: 369 IRAVKVEKASVKSEIKTKETELAEVEAEIDSVDTEFDELKDELAAKKSQLEELKTERNDL 428 Query: 632 ESQ 634 + + Sbjct: 429 QRE 431 >gi|157878986|ref|XP_001687323.1| hypothetical protein [Leishmania major strain Friedlin] gi|321438238|emb|CBZ11990.1| hypothetical protein LMJF_03_0270 [Leishmania major strain Friedlin] Length = 2354 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 100/333 (30%), Gaps = 20/333 (6%) Query: 319 LCFDGDDPGLRAAYKAIDLVLCH-----LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 L DGD+ + A A +L L+ D ++ Sbjct: 1234 LAADGDEARQQLAANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQ 1293 Query: 374 LIVESLPLV---DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 + + + R N + + + R Q + Sbjct: 1294 RLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 1353 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++L Q+ T + AR + +++ + ++ + + + ++ A L Sbjct: 1354 NAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEA 1413 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + + + + +L + + +++ + L Sbjct: 1414 --QVARLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQLAA--NAEELQQRL 1468 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 +Q + A A+ + RQ A L +R ++Q+ E+E ++A++ A G Sbjct: 1469 DTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADG 1528 Query: 610 EAEK------TAILISILHEVHIQIHQIESQEA 636 + + L L Q ++E+Q A Sbjct: 1529 DEARQQLAANAEELQQRLDTATQQRAELEAQLA 1561 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 77/281 (27%), Gaps = 17/281 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D Sbjct: 253 QRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAADGDEARQ 312 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + + Sbjct: 313 QLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRA 372 Query: 484 EAAL-LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L L E Q+LA ++L L + ++ + Sbjct: 373 ELEAQLARLAAD---RDEARQQLAA------NAEELQQRLDTATQQRAELEAQVARLAAN 423 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601 + L +Q + A A+ + RQ A L +R ++Q+ E+E + Sbjct: 424 AEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAR 483 Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +A++ A G+ + L L Q ++E+Q A Sbjct: 484 VARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQVA 524 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 77/218 (35%), Gaps = 7/218 (3%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R Q + +Q L + E Sbjct: 937 AEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAE--LE 994 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542 A L + Q+ +++ + + + L + +E Q+L Sbjct: 995 AQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQLAAN 1053 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601 + L +Q + A A+ + RQ A L +R ++Q+ E+E Q Sbjct: 1054 AEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 1113 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +A++ A G+ + L + E+ ++ Q A +E Sbjct: 1114 VARLAADGDEAR-QQLAANAEELQQRLDTATQQRAELE 1150 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 41/284 (14%), Positives = 82/284 (28%), Gaps = 12/284 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 989 QRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAADRDEARQ 1048 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + + Sbjct: 1049 QLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAANAEELQQRLDTATQQRA 1108 Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E A + + Q+ +++ + + + L V + +E Q+L Sbjct: 1109 ELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQL 1167 Query: 542 --CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEI 598 + L +Q + A A+ + RQ A L +R ++Q+ E+ Sbjct: 1168 AANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAEL 1227 Query: 599 EKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 E Q+A++ A G+ + L L Q ++E+Q A Sbjct: 1228 EAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQLA 1271 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 40/286 (13%), Positives = 82/286 (28%), Gaps = 12/286 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D Sbjct: 1474 QRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADGDEARQ 1533 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + + Sbjct: 1534 QLAANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRA 1593 Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E A + + Q+ +++ + + + L V + +E Q+L Sbjct: 1594 ELEARVARLAADGDEARQQLAANAEELQQRLDTATQQRAEL-EARVARLAADRDEARQQL 1652 Query: 542 --CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEI 598 + L +Q + A A+ + RQ A L +R ++Q+ E+ Sbjct: 1653 AANAEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAEL 1712 Query: 599 EKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEAMI 638 E Q+A++ A G+ + L L Q ++E + A++ Sbjct: 1713 EAQLARLAADGDEARQQLAANAEELQQRLDTATQQRAELEVEMAVL 1758 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R Q + +Q L + E Sbjct: 597 AEELQQRLDTATQQRAELEARVARLAVDRDEARQQLAANAEELQQRLDTATQQRAE--LE 654 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542 A + + Q+ +++ + + + L + +E Q+L Sbjct: 655 AQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 713 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601 + L +Q + A A+ + RQ A L +R ++Q+ E+E Q Sbjct: 714 AEELQQRLDTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 773 Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +A++ A + + L L Q ++E+Q A Sbjct: 774 LARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 814 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R Q + +Q L + E Sbjct: 1093 AEELQQRLDTATQQRAELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAE--LE 1150 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542 A + + Q+ +++ + + + L + +E Q+L Sbjct: 1151 ARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 1209 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601 + L +Q + A A+ + RQ A L +R ++Q+ E+E Q Sbjct: 1210 AEELQQRLDTATQQRAELEAQVARLAADGDEARQQLAANAEELQQRLDTATQQRAELEAQ 1269 Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +A++ A + + L L Q ++E+Q A Sbjct: 1270 LARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 1310 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 12/221 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R Q + +Q L + E Sbjct: 675 AEELQQRLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAE--LE 732 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--C 542 A + + Q+ +++ + + + L + +E Q+L Sbjct: 733 AQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL-AADRDEARQQLAAN 791 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQ 601 + L +Q + A A+ + RQ A L +R ++Q+ E+E Q Sbjct: 792 AEELQQRLDTATQQRAELEAQVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQ 851 Query: 602 IAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +A++ A + + L L Q ++E+Q A Sbjct: 852 VARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVA 892 Score = 41.4 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 44/337 (13%), Positives = 98/337 (29%), Gaps = 31/337 (9%) Query: 319 LCFDGDDPGLRAAYKAIDLVLCH-----LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 L D D+ + A A +L L+ D ++ Sbjct: 448 LAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADGDEARQQLAANAEELQQ 507 Query: 374 LIVESLPLV---DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 + + + R N + + + R Q + Sbjct: 508 RLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 567 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++L Q+ T + AR Q+ + ++ + EA + Sbjct: 568 NAEELQQRLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAE------LEARVARL 621 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGE 548 ++ Q+ +++ + + + L + +E Q+L + Sbjct: 622 AVDRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQLAANAEELQQ 680 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTA 607 L +Q + A A+ + RQ A L +R ++Q+ E+E Q+A++ A Sbjct: 681 RLDTATQQRAELEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAA 740 Query: 608 KGEAEK------TAILISILH-------EVHIQIHQI 631 + + L L E+ Q+ ++ Sbjct: 741 DRDEARQQLAANAEELQQRLDTATQQRAELEAQLARL 777 Score = 41.4 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 4/120 (3%) Query: 523 FSDFVEQKYFLPEEIHQRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579 V + +E Q+L + L +Q + A A+ + RQ Sbjct: 218 LEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVARLAADRDEARQQLAA 277 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 A L +R ++Q+ E+E Q+A++ A G+ + L + E+ ++ Q A +E Sbjct: 278 NAEELQQRLDTATQQRAELEAQVARLAADGDEAR-QQLAANAEELQQRLDTATQQRAELE 336 Score = 41.4 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 76/225 (33%), Gaps = 16/225 (7%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Q + ++L Q+ T + AR Q+ + ++ + Sbjct: 1383 RDEARQQLAANAEELQQRLDTATQQRAELEAQVARLAANAEELQQRLDTATQQRAE---- 1438 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 EA + + Q+ +++ + + + L + +E Q+ Sbjct: 1439 --LEARVARLAADRDEARQQLAANAEELQQRLDTATQQRAELEAQVARL-AADRDEARQQ 1495 Query: 541 L--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 L + L +Q + A A+ + RQ A L +R ++Q+ E Sbjct: 1496 LAANAEELQQRLDTATQQRAELEARVARLAADGDEARQQLAANAEELQQRLDTATQQRAE 1555 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E++ A Sbjct: 1556 LEAQLARLAADRDEARQQLAANAEELQQRLDTATQQRAELEARVA 1600 >gi|284993406|ref|YP_003411961.1| replicative DNA helicase [Geodermatophilus obscurus DSM 43160] gi|284066652|gb|ADB77590.1| replicative DNA helicase [Geodermatophilus obscurus DSM 43160] Length = 871 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 58/174 (33%), Gaps = 17/174 (9%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 R ++ + + E ++L ++ + + + LA + + Q ++ + Sbjct: 8 SRPTPTAPQYDRQPPQDVAAEQSVLGGMLLSKDAIADVVEVLAGLDFYRPAHQVIFDCIL 67 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + + L + L ++ V L +T A GY A+ Sbjct: 68 DLYGRGEPADAITVAAELNRT---DQLSKMGGAVYLHTLIQSTPTA----ANAGYYAAIV 120 Query: 584 LYKRFRLLSRQKEEIEKQIAQ-----VTAKGE-AEKTAILISILHEV-HIQIHQ 630 + + R+ E ++ Q KG+ + +++V ++ + Sbjct: 121 A---EQAVLRRLVEAGTRVVQLGYGAAGGKGDVDDIVDRAQQEIYDVTEKRMSE 171 >gi|226312493|ref|YP_002772387.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599] gi|226314973|ref|YP_002774869.1| replicative DNA helicase [Brevibacillus brevis NBRC 100599] gi|226095441|dbj|BAH43883.1| probable replicative DNA helicase [Brevibacillus brevis NBRC 100599] gi|226097923|dbj|BAH46365.1| probable replicative DNA helicase [Brevibacillus brevis NBRC 100599] Length = 459 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 7/150 (4%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E A+L + P ++ + EL + + Q L+ + + + Sbjct: 5 QEMPHSEEAEKAVLGAIFCKPPVITKVIDELTAMDFYRTRHQILYQGMADLYEKGDPIDL 64 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSR 593 I L E+ K LD + + + Y L +R +L+ Sbjct: 65 VTITSHLQEK------KALDNVGGVPYITELVSYTPTAENIDYYAGIVLHKARRRKLIEI 118 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + + + ++ L + + E Sbjct: 119 NYQVYKDSLNNENVDEVLAQSEKLAAEIRE 148 >gi|312141930|ref|YP_004009266.1| replicative DNA helicase dnab [Rhodococcus equi 103S] gi|311891269|emb|CBH50590.1| replicative DNA helicase DnaB [Rhodococcus equi 103S] Length = 432 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 15/151 (9%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++L ++ + + + L + Q ++ + + + P + L Sbjct: 3 AEQSVLGGMLLSKDAIADVLEVLRPGDFYRPAHQSVYDAILDLYSRGEPADPVTVSAELD 62 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 RG +L R L + T Y + +A + + R+ + +I Sbjct: 63 RRG------ELRRIGGAPYLVTLTQTVPTAANAAYYAEIVA----EKSILRRLVDAGTRI 112 Query: 603 AQVTAKGE-----AEKTAILISILHEVHIQI 628 Q G AE + + EV + Sbjct: 113 VQYGYAGSDGQDVAEVVDRAQAEIFEVTERR 143 >gi|302668683|ref|YP_003833131.1| hypothetical protein bpr_IV185 [Butyrivibrio proteoclasticus B316] gi|302397647|gb|ADL36549.1| hypothetical protein bpr_IV185 [Butyrivibrio proteoclasticus B316] Length = 393 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 53/337 (15%), Positives = 102/337 (30%), Gaps = 28/337 (8%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPV 102 CPF K F N KG +CF+C D S+ +A G S ++ + +P Sbjct: 31 CPFCGGKR--FGMNIKKGIGHCFNCCETADSASYYAAHTGLSLNDARNDIRKRLNIPDEK 88 Query: 103 VDPKIE--KKEKIQTDL--IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + KE+ Q +L I + + F L ++ + L RG I Sbjct: 89 GNLPERMVYKEETQEELAPIEVRDRTYRAFLEELI--LSQKNYDNLRARGFTDDDIVAKG 146 Query: 159 LGYAPDSRYSLREH-LRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 P + + E R+ + + ++ R +I P Q+ Sbjct: 147 YKTFPSAENTSFEDLCRRLLNKGCTLAGVPGFYKNTKNEWTFVRLTPGIIIPQIGIHNQI 206 Query: 218 IAFGGRTLSK---------GESVKYLNSPETILFHKGKNLYNFFGALNYL-QKSIRKDVR 267 F R + + +S A +++ + ++ Sbjct: 207 EGFQIRKDDDLRREYDGELEAKIVWFSSKGKSHGTGPHV--TVHIATDFIYYRDKKQYEP 264 Query: 268 RNSSSFIILVEGYMDVLSLCQ-----AGVQNVVSSLGTALTEYQLRLLWKLSPR-IVLCF 321 + + L EG M A + V + L L + + + F Sbjct: 265 VLHGNKVTLTEGGMKADLCACLLDNHASLIAVQGVHALNPLKEALIALKPFGLKTVNVAF 324 Query: 322 DGDDPGLRAAYKAIDLVLCHLIP-GNRVNFVLLSRGE 357 D D + +A++ V + G ++ + Sbjct: 325 DMDYLTNKNVKEAMEKVTALIKELGLEYENLMNWEYK 361 >gi|298245092|ref|ZP_06968898.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963] gi|297552573|gb|EFH86438.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963] Length = 448 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L EAALL +LI P + L+ + ++ + + + +Q+ Sbjct: 4 RLPPSNLEAEAALLGSLIIDPEAVGLIADVLSPDDFYRQAHSMIYEAILTLYEQQEPADL 63 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L RG +LD D + S + Y + +A + R+ Sbjct: 64 VTLSDELIRRG------KLDEVGGDDYITSLVNTVPTSGNVEYYGRIVARTAQA----RR 113 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISIL 621 QIA + + + T ++ Sbjct: 114 LIHAAGQIAATAYEDDEQATEKAEQLI 140 >gi|17561652|ref|NP_505094.1| MYOsin heavy chain structural genes family member (myo-5) [Caenorhabditis elegans] gi|10864419|gb|AAG24132.1| Hypothetical protein F58G4.1 [Caenorhabditis elegans] Length = 1974 Score = 49.1 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 93/245 (37%), Gaps = 22/245 (8%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 ++A+LE + N + + D++ + + +++Q + S KK + Sbjct: 921 QKADLEKQMANMNDQLCDEEEKNAALTKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQA 980 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +Q + +E + + ++ +++ N L K Sbjct: 981 KDHQIRSLQDEIQSQDEVISKLNKEKK------HQEEVNRKLLEDIQAEEDKVNHLNKTK 1034 Query: 520 SFLFSDFVEQKY---------FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ +++ EL+++L+R + + Sbjct: 1035 AKLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELIEELNRHKHEQEQVIKKKD 1094 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626 + ++ + +L + L RQ +E+ +I ++ + +AE+ + + +E+ + Sbjct: 1095 IELSSIQSRLEDEQSLVAK---LQRQIKELLARIQELEEELDAERNSRSKAEKARNEMQM 1151 Query: 627 QIHQI 631 ++ ++ Sbjct: 1152 ELEEL 1156 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 9/231 (3%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + LR ++ A+ + QL + +KN + R+ Q Sbjct: 1189 EDAAINSETSMAALRKKHNDAVAELSDQLDT---IQKMRGKLEREKNDKQREVDELQQSA 1245 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + + EA L + + + +NE Q L L Sbjct: 1246 DVEAKQRQNCERMAKQLEAQLTDMTLKSDEQARLIQELTMGKNKVHNENQDLNRQLEDAE 1305 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + Q L Q R+ + + + R+ ++ Sbjct: 1306 AQLCALNRIKQQQHSQLEELKRTLDQETRERQSLHSQVSNYQLECEQFRESLEEEQDA-- 1363 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634 + RQ + +I Q AK E E + L ++ ++ +++ Q Sbjct: 1364 -KTDVQRQLSKANSEIQQWRAKFEGEGVSRAEELEETRRKLTHKVQEMQEQ 1413 >gi|72383410|ref|YP_292765.1| ATPase [Prochlorococcus marinus str. NATL2A] gi|72003260|gb|AAZ59062.1| ATPase [Prochlorococcus marinus str. NATL2A] Length = 931 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 13/189 (6%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL--LTLINHPAILQEQYQELA---- 506 N R + L S + L + + ++ LI + + Sbjct: 389 NRRFQQVSIKEPSLDLSLEILKGLKENYEVHHGVIITDEALITANRLAYRYISDRCLPDK 448 Query: 507 DIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 I + ++ S L +E+K + + L+ ++ L Sbjct: 449 AIDLIDEASAQVRIESALKPKIIEEKESQVNHLESSIINADKDTTLETINNLQEKKELLL 508 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623 + +++Q +Q + + L +E++ I +V G+ E+ L L++ Sbjct: 509 F----ELAEIKQKWQDQIDKSAELQELKISLKELKNLIREVEISGDMEEVERLKYDQLYQ 564 Query: 624 VHIQIHQIE 632 + +I +IE Sbjct: 565 LQERIEEIE 573 >gi|53803929|ref|YP_114174.1| replicative DNA helicase [Methylococcus capsulatus str. Bath] gi|53757690|gb|AAU91981.1| replicative DNA helicase [Methylococcus capsulatus str. Bath] Length = 461 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 48/166 (28%), Gaps = 6/166 (3%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 R + + K+ E A+L L+ + + + + + ++ + Sbjct: 6 RSIDKRVEALKIPPHSIQAEQAVLGGLLLDNQTWDVVADRIVEEDFYRRDHRLIFRAIRQ 65 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 Q F + + L + G +L+ A L E Y + Sbjct: 66 LSERQAPFDVVTLSEVLEKTG------ELEEAGGLAYLAVLARETPSAANIAAYADIVRE 119 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R L EI Q +G ++ + ++ Q + Sbjct: 120 RAVLRQLIHVGTEIADSAYQPEGRGMSDLLEQAEQRVFQIADQRQR 165 >gi|326202844|ref|ZP_08192711.1| replicative DNA helicase [Clostridium papyrosolvens DSM 2782] gi|325986921|gb|EGD47750.1| replicative DNA helicase [Clostridium papyrosolvens DSM 2782] Length = 446 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 10/161 (6%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 G++ + E ++L +++ ++ + L + + ++++ + F + Sbjct: 7 GRIPPQSLEAEQSVLGSMLIDKEVVPVVMEILKPEDFYRPDHKEIYDVIIELFDRAQPID 66 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + +RL G EL+ L+ L + TE + Y + + + L R Sbjct: 67 LITVSERLKLHGKLELVGGLE------YLTNIATEVPTTANVKHYAKIVE----EKALLR 116 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + I + E + IL + + + SQ Sbjct: 117 KLIKASTDIVDLGYNASEEVSYILDKAEQNIFDILQKRSSQ 157 >gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946] gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946] Length = 882 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%) Query: 47 DEKTPSFHCNDSKG--FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG-VPLPVV 103 + PS ++G F+ G+ L G S E+ + L A AG V LP Sbjct: 42 GDTHPSLSLFQARGMWFWKDHGSGESGNAFHLLLRA-GMSKEEAAELLKARAGEVALPEA 100 Query: 104 DPKIEKKE 111 + +++ Sbjct: 101 YFRQAERD 108 >gi|291412099|ref|XP_002722322.1| PREDICTED: periplakin, partial [Oryctolagus cuniculus] Length = 1693 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 10/132 (7%) Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE---- 568 E++ L + L + +Q E Q R E L Q+ +V + E Sbjct: 1243 EEVESLRAKLSEEQKKQVDLDRERAAQEEKIRQKEEELSQVTERVVQQEVVQYEEEPGLR 1302 Query: 569 ----ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 A + +Q L R L +++ E+E+Q+ ++ E + + Sbjct: 1303 AEVSAFTESIDAELRQIDKLRAELRRLQQRRGELERQLQELER--ERQARREAEQEAQRL 1360 Query: 625 HIQIHQIESQEA 636 ++ +E + A Sbjct: 1361 QQRLAVLEREAA 1372 >gi|332259764|ref|XP_003278953.1| PREDICTED: rootletin-like [Nomascus leucogenys] Length = 802 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 72/221 (32%), Gaps = 11/221 (4%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R S+ + R ++ ++ E + ++ + + + Sbjct: 213 ETERSLLSEELS-RARRALERVRQEAQSQQERAQATISATTEELKALQAQFEDAITAHQR 271 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPE 535 +L E +L + +E + A + L L L + E + + Sbjct: 272 DTTALHE-SLRDLAAERGDVEREAERLRAQLTVAQEGLAALRQELQGVEESREGLHREAQ 330 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR 593 E Q L + + + L A + A E + Q+ L L + L + Sbjct: 331 EARQALSDEAREKDVLLLFNSELRATICRAEQEKASFKRSKEEKEQKLLVLEEAQAALQQ 390 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + ++ ++ E + L E+H Q+ ++++ Sbjct: 391 EASALRARLWELEQAREDAR-----QELRELHRQVRTLKAE 426 >gi|317146977|ref|XP_001821797.2| dynactin [Aspergillus oryzae RIB40] Length = 1356 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R S A+ L++L K ++ + + + +S + K + +P Sbjct: 299 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 357 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + L + E+ + + E+ L + + + E + R Sbjct: 358 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 417 Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591 + E R E L Q + E +R+ + + ++ L Sbjct: 418 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 477 Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q +E+++ + + + + EK + + + ++ Q+ E MIE Sbjct: 478 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 530 >gi|303249182|ref|ZP_07335420.1| replicative DNA helicase [Desulfovibrio fructosovorans JJ] gi|302489405|gb|EFL49354.1| replicative DNA helicase [Desulfovibrio fructosovorans JJ] Length = 484 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 20/213 (9%), Positives = 58/213 (27%), Gaps = 31/213 (14%) Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPAILQEQ 501 R ++ + G + L +L + K+ + E A+L ++ ++L Sbjct: 5 RKKPRSQKSSGLAGSGEPLTGQALERVSADVLKKIPPQNLEAEQAVLGGVLLKNSVLYNL 64 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551 + + + + + ++ + + + + L G EL Sbjct: 65 VDLVGEDDFYSPAHRLIFQSILGLSAKNAPIDLVSLAEALRAAGKLEEVGGPTYLAELTA 124 Query: 552 QLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 E + + + L + E+ IA Sbjct: 125 STVSAANALHHAGIVREKAVQRKLITTALDIITRCYDGGQETETLLDESEQAIFSIADAR 184 Query: 607 AK----GEAEKTAILISILHEVHIQIHQIESQE 635 + + + + + ++E++E Sbjct: 185 STRGLHSSKDLVTRVFEQIEK------RMENKE 211 >gi|238798494|ref|ZP_04641973.1| Replicative DNA helicase [Yersinia mollaretii ATCC 43969] gi|238717656|gb|EEQ09493.1| Replicative DNA helicase [Yersinia mollaretii ATCC 43969] Length = 468 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|221505145|gb|EEE30799.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 3076 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 93/272 (34%), Gaps = 17/272 (6%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427 + RE + ++ E+ + N K + R ++Q Sbjct: 1902 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1961 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +L + +++A + + + + + + E A Sbjct: 1962 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2018 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L + + QE + L + E E + + L E+ Sbjct: 2019 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEEKC-A 2074 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 LL++++ + + + + + + +Q L + + R+ EE+E+++A Sbjct: 2075 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRVA---- 2130 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E+ A ++L ++ Q Q+++Q++++E Sbjct: 2131 ----EQRAREAALLRQIENQEDQLQNQQSLLE 2158 >gi|261419034|ref|YP_003252716.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC61] gi|319765851|ref|YP_004131352.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC52] gi|261375491|gb|ACX78234.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC61] gi|317110717|gb|ADU93209.1| ATP-dependent chaperone ClpB [Geobacillus sp. Y412MC52] Length = 864 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 29/205 (14%), Positives = 77/205 (37%), Gaps = 10/205 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ + + AL+ + Sbjct: 319 YRQYIEKDPALERRFQQVLVQEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + + + + S E + + + E + + R Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438 Query: 556 Q---VRDAGLWSATTEANIVDVR-QGYQQALALYKRFR-LLSRQKEEIEKQIAQVTAKGE 610 + L +AN + + Q ++AL +R R L R K E+E + + + Sbjct: 439 ERLVALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELE----EAENEYD 494 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634 K A L + ++ Q+ Q+E + Sbjct: 495 LNKAAELRHGRIPQLEKQLKQLEQE 519 >gi|183217337|gb|ACC59256.1| unknown [Streptococcus pneumoniae] Length = 361 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 I++ I I ++ + + + + ++ + P HD SF + + FS Sbjct: 3 IEECKQ-ISILDVASRLGISFKQVSSSVYEH------PEHD----SFRIFSNTNTFKWFS 51 Query: 67 CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 ++GD + F+ + G SF +++ L+ + ++++ + L + Sbjct: 52 RDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLNRI 102 >gi|294673591|ref|YP_003574207.1| hypothetical protein PRU_0854 [Prevotella ruminicola 23] gi|294472290|gb|ADE81679.1| conserved domain protein [Prevotella ruminicola 23] Length = 922 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 54/395 (13%), Positives = 112/395 (28%), Gaps = 49/395 (12%) Query: 47 DEKTPSFHCNDSKG---FYY--CFSCHVK-G--DHLSFLSALLGCS---FIESVQRLAAI 95 +E TPS G +++ F G + G + F +VQ LA Sbjct: 42 NEHTPSACVYPPTGNVAYWHVKDFGMGEGEGYFSPIDLYMWDRGYTQAQFAIAVQELAEQ 101 Query: 96 AGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIE 155 GV + + + + L + G + + Sbjct: 102 YGVQDELKQGANKPEVIKRPAL----------------PCEIGKPVRVTYGDGFTAADLS 145 Query: 156 MFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRG 215 ++ + + +Y + ++ G Sbjct: 146 VWGPCVKAE-----HLMELGWRTVAAITRTSDGTTTIKKPTDTYPIYAQVCMYQ--DDDG 198 Query: 216 QVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFII 275 + +F K + + S I L+ + ++ ++ Sbjct: 199 NMQSFIKVYEPKNFNKSFRFS--IIGHKPQHYLFGL-----AALRRKYEERGEVKLDEVV 251 Query: 276 LVEGYMDVLSLCQAGVQNVVSSLGTALTEY-QLRLLWKLSPRIVLCFDGDDPGLRAAYKA 334 +V G D + G Q V S T + L+LL K + R+V D DD G++A + Sbjct: 252 IVSGGSDAANCLSLGYQPVWLSSETETLQESDLKLLMKYAKRVVNIPDIDDTGMKAGRRL 311 Query: 335 IDLVLCHLIPGNRVNFVLLSRG------EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388 + + + L +D +I+ A + ++ +R Sbjct: 312 ALSLPTIHTAWMTASDMHLLHDNRGRYRKDLKDYIQLNPHRAAMRRLISRAQCAQYWIER 371 Query: 389 ETENRSFNTPDERAELEIHLK-NCINHIKDQKLRY 422 ++ + + A L +L N +KD + Sbjct: 372 HDKDGNISYSISAARLNYYLALNGYYTLKDDAHKD 406 >gi|39938499|ref|NP_950265.1| replicative DNA helicase [Onion yellows phytoplasma OY-M] gi|39721608|dbj|BAD04098.1| replicative DNA helicase [Onion yellows phytoplasma OY-M] Length = 447 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 10/131 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E ALL L+ +P + +A+ + ++ Q ++ + + K Sbjct: 5 SKNTPSSPEAERALLGALLLNPEKIAFTLDMIAETDFYSSHHQHIFRAMKTLHETNKQID 64 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + + +D + L +T + Y + + L R Sbjct: 65 YSSVSAILDNEKLLQQIGNIDYLNELSDLMPST------QHIETYIDLI----KETALKR 114 Query: 594 QKEEIEKQIAQ 604 + E +AQ Sbjct: 115 EIIETVTSLAQ 125 >gi|222053891|ref|YP_002536253.1| ATP-dependent chaperone ClpB [Geobacter sp. FRC-32] gi|221563180|gb|ACM19152.1| ATP-dependent chaperone ClpB [Geobacter sp. FRC-32] Length = 866 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/201 (11%), Positives = 73/201 (36%), Gaps = 2/201 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R +++ + +++ + + ++++A++ Sbjct: 321 YRKHIEKDAALERRFQQVYAGEPSVEDTIAILRGLKERYENYHSVRIKDSAIIAAATLSD 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLD 554 + +++ I + +L + S E + I + ++ E Sbjct: 381 RYITDRFLPDKAIDLIDEAASRLRIEIDSMPTEIDEVERKVIQLEIEKQALLREQDPHAK 440 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++R ++ ++ +QQ +L L +Q EE ++Q + +G+ T Sbjct: 441 ERLRKISDELEELRSSSATLKSQWQQEKSLLTSISDLKKQLEEKKEQAKKSEREGDLALT 500 Query: 615 AIL-ISILHEVHIQIHQIESQ 634 A L + + I ++ Sbjct: 501 AKLRYGEIPAIEKDIADKSNE 521 >gi|188995072|ref|YP_001929324.1| ClpB protein [Porphyromonas gingivalis ATCC 33277] gi|188594752|dbj|BAG33727.1| ClpB protein [Porphyromonas gingivalis ATCC 33277] Length = 863 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 73/213 (34%), Gaps = 12/213 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KY + R ++ + S +++ K + K +++ A++ + ++H Sbjct: 317 YRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + + I + +L + S E + + Sbjct: 377 RYITERFLPD-KAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEK 435 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 Q D + + + +Q + + L EE++ Q + +G+ + Sbjct: 436 VQFLDREIAELKEKEASEKAQ--WQNEKDRINQIQQLKIDIEELKFQADRAEREGDYGRV 493 Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639 A + + + + Q+H+++ +MI+ Sbjct: 494 AEIRYGLIKQKETEIDTIQQQLHELQRGGSMIK 526 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 21/291 (7%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 R E L + + +DM + + + I Sbjct: 219 YRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEI------I 272 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + I + + + + + R + + K K Sbjct: 273 LFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKA------ 326 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQ 539 E + +++ P L L ++ K+ + + ++ E Sbjct: 327 LERRFQMVMVDEPDELSSI-SILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLP 385 Query: 540 RLCERGFGELLKQLDRQV--RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E +L +V L + +++ + + ++ + L R+ E Sbjct: 386 DKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAE 445 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 ++++ + + K + + I+ + ++ I I +++ Q E G GR+ Sbjct: 446 LKEK--EASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAEREGDY-GRV 493 >gi|148243496|ref|YP_001228653.1| replicative DNA helicase [Synechococcus sp. RCC307] gi|147851806|emb|CAK29300.1| Replicative DNA helicase [Synechococcus sp. RCC307] Length = 474 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/202 (9%), Positives = 58/202 (28%), Gaps = 16/202 (7%) Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 E ++ + ++ + E +L ++ P + Sbjct: 4 ERRNGAMVSVPLNEPERERTRRKDAELFEATPEQIPPQNLEAEEMILGGILLDPDAIGRV 63 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVR 558 L + ++++ + K + L + G E + +L V Sbjct: 64 ADVLQPEAFYTGAHREIFRTALMLHGQGKPTDLTAMVAWLADTGQLEKVGGSSRLSELVD 123 Query: 559 DAGLWSATTEANIVDVRQGYQQALAL---------YKRFRLLSRQKEEIEKQI----AQV 605 ++ E + + + ++ L + + + + + +E E++I Sbjct: 124 RTLSTASIEEVAKLVMDKHLRRQLIRSGNEVIGLGFDQSKPMDQVLDEAEQKIFAISQSK 183 Query: 606 TAKGEAEKTAILISILHEVHIQ 627 + G IL E+ + Sbjct: 184 PSLGLTPTAEILTRTFEEIETR 205 >gi|159044916|ref|YP_001533710.1| replicative DNA helicase [Dinoroseobacter shibae DFL 12] gi|157912676|gb|ABV94109.1| replicative DNA helicase [Dinoroseobacter shibae DFL 12] Length = 506 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 19/168 (11%), Positives = 48/168 (28%), Gaps = 12/168 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E LL ++ + + + + + ++++ + + Sbjct: 23 SPGLPQNIEAEQQLLGAILTNNDVFDRVSMIIQPEHFFDPVHRRIYEVAATRIQKNALAS 82 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + L + L A L A + Y Q + + R Sbjct: 83 PVTLKAFLEDDPG------LAELGGPAYLVRLAGAAISAFAAKDYAQMIYDL----AIRR 132 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + E+ ++I A+ + + E ++ + Q GF Sbjct: 133 ELIELGQEIVSKAAQVDVASEPK--EQIVEAEQALYALGEQGKSDSGF 178 >gi|109465234|ref|XP_227472.4| PREDICTED: cingulin [Rattus norvegicus] gi|109467175|ref|XP_001059265.1| PREDICTED: cingulin [Rattus norvegicus] Length = 1335 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 30/207 (14%), Positives = 74/207 (35%), Gaps = 9/207 (4%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 Q+ + + K + +D + L + K ++ ++ LRE L Sbjct: 576 QVKELQLKLKHSQNLDPGKESLLKDLLETRELLEELLEGKQRVEEQLRLRERELTALKGA 635 Query: 494 HPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + QE+ +R + ++L + + E ++ EL K+ Sbjct: 636 LKEEVASHDQEVEHVRLQYQRDTEQLRRSMQDATQDHAAVEAE---RQKMSSLVRELQKE 692 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAK 608 L+ + G W + N ++R Q+ L L + + E +++ + Q A Sbjct: 693 LEETSEETGHWQNMFQKNKEELRAAKQELLQLRMEKEEIEEELGEKMEILQRDLEQARAS 752 Query: 609 -GEAEKTAILISILHEVHIQIHQIESQ 634 + ++ L L ++ +++++ Sbjct: 753 TRDTQQVEELKKELQRTQGELKELQAE 779 Score = 42.2 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 45/291 (15%), Positives = 100/291 (34%), Gaps = 25/291 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 S + Y + A +++ D + E + + + + +D Sbjct: 1005 QSQMEDYKEKARKEVADAQRQAKDWASEAEKNSGGLSRLQDELQRLRQALQTSQAERDTA 1064 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + RLQ L Q+ + ++ ++ + + +L Sbjct: 1065 RLD--KELLAQRLQGLEQEAENKKRSQDDKARQLKSLEEKVSRLEAELDEEKNTVELLTD 1122 Query: 480 PSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWS--------FLFSDF 526 R L L+ + Q+ + + N +L+ +L S FS Sbjct: 1123 RVNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKTRLASSEGLQKPSASFSQL 1182 Query: 527 VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 Q L E + E+ ++L+R+V++ + ++ D + L Sbjct: 1183 ESQNQLLQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQ------LT 1236 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635 R + L RQ +E E++I ++ + + + HEV+ Q+ +I+S E Sbjct: 1237 LRVKALKRQVDEAEEEIERLDSLRKKA--QRELEEQHEVNEQLQARIKSLE 1285 >gi|34540850|ref|NP_905329.1| clpB protein [Porphyromonas gingivalis W83] gi|54035793|sp|Q7MVE7|CLPB_PORGI RecName: Full=Chaperone protein ClpB gi|34397164|gb|AAQ66228.1| clpB protein [Porphyromonas gingivalis W83] Length = 863 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 26/213 (12%), Positives = 73/213 (34%), Gaps = 12/213 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KY + R ++ + S +++ K + K +++ A++ + ++H Sbjct: 317 YRKYFEKDKALERRFQMVMVDEPDELSSISILRGLKEKYENHHKVRIKDDAIIAAVKLSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + + I + +L + S E + + Sbjct: 377 RYITERFLPD-KAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEK 435 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 Q D + + + +Q + + L EE++ Q + +G+ + Sbjct: 436 VQFLDREIAELKEKEASEKAQ--WQNEKDRINQIQQLKIDIEELKFQADRAEREGDYGRV 493 Query: 615 AILI--------SILHEVHIQIHQIESQEAMIE 639 A + + + + Q+H+++ +MI+ Sbjct: 494 AEIRYGLIKQKETEIDTIQQQLHELQRGGSMIK 526 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 21/291 (7%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 R E L + + +DM + + + I Sbjct: 219 YRIVRGDVPENLRNKQIFSLDMGALIAGAKYKGEFEERLKAVVNEVTGAEGEI------I 272 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + I + + + + + R + + K K Sbjct: 273 LFIDEIHTLVGAGKSEGAMDAANILKPALARGELRAIGATTLDEYRKYFEKDKA------ 326 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLW---SFLFSDFVEQKYFLPEEIHQ 539 E + +++ P L L ++ K+ + + ++ E Sbjct: 327 LERRFQMVMVDEPDELSSI-SILRGLKEKYENHHKVRIKDDAIIAAVKLSHRYITERFLP 385 Query: 540 RLCERGFGELLKQLDRQV--RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 E +L +V L + +++ + + ++ + L R+ E Sbjct: 386 DKAIDLMDEAAARLRMEVDSLPEELDEISRRIKQLEIEREAIKRENDEEKVQFLDREIAE 445 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 ++++ + + K + + I+ + ++ I I +++ Q E G GR+ Sbjct: 446 LKEK--EASEKAQWQNEKDRINQIQQLKIDIEELKFQADRAEREGDY-GRV 493 >gi|172036856|ref|YP_001803357.1| ATP-dependent Clp protease ATP-binding subunit [Cyanothece sp. ATCC 51142] gi|171698310|gb|ACB51291.1| ATP-dependent Clp protease, ATP-binding subunit [Cyanothece sp. ATCC 51142] Length = 872 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 77/206 (37%), Gaps = 14/206 (6%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 321 YRKYIEKDAALERRFQEVLVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + + + Q+ R Sbjct: 381 RYISDRFLPDKAIDLVDESAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEEDQVSR 440 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608 + E + D+++ Q A ++ + + Q E+++ +I Q Sbjct: 441 E------RLEKLEKELADLKEEQSQLNAQWQAEKEVIDQIRELKETIDQVNLEIQQAERD 494 Query: 609 GEAEKTAIL-ISILHEVHIQIHQIES 633 + K A L L ++ Q+ ++ES Sbjct: 495 YDLNKAAELRYGKLTDLQRQVKELES 520 >gi|301613667|ref|XP_002936330.1| PREDICTED: dynactin subunit 1 [Xenopus (Silurana) tropicalis] Length = 1420 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%) Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+ L + L + + +A K ++ L Sbjct: 343 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 402 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + D ++ K A E L + + +M + + + E L+ Sbjct: 403 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 462 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ +KD+ + L+ + + E G ++ Q ++ + Sbjct: 463 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 512 Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525 LV+ + +E + + L++Q ++L + + +L + + Sbjct: 513 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 572 Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 EE+ + L ER E +++L V D + + + R+ L Sbjct: 573 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 623 Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638 L ++ + + E EK++ + + K L + L EV+ ++ QEA + Sbjct: 624 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 681 Query: 639 E 639 E Sbjct: 682 E 682 >gi|238496759|ref|XP_002379615.1| dynactin, putative [Aspergillus flavus NRRL3357] gi|220694495|gb|EED50839.1| dynactin, putative [Aspergillus flavus NRRL3357] Length = 1356 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R S A+ L++L K ++ + + + +S + K + +P Sbjct: 299 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 357 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + L + E+ + + E+ L + + + E + R Sbjct: 358 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 417 Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591 + E R E L Q + E +R+ + + ++ L Sbjct: 418 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 477 Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q +E+++ + + + + EK + + + ++ Q+ E MIE Sbjct: 478 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 530 >gi|297204729|ref|ZP_06922126.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083] gi|197710804|gb|EDY54838.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083] Length = 879 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 24/214 (11%), Positives = 72/214 (33%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R +++ + +++ + ++ +++ +L+ ++H Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTSLVAAATLSH 383 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + + Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALSKETD--- 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607 A L E + + A ++ R R+ +E+ +++ + Sbjct: 440 -PASKARLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640 + + A L L ++ ++ E Q A +G Sbjct: 497 TYDLNRAAELRYGRLQDLERRLAAEEEQLASKQG 530 >gi|257469139|ref|ZP_05633233.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] gi|317063386|ref|ZP_07927871.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] gi|313689062|gb|EFS25897.1| replicative DNA helicase [Fusobacterium ulcerans ATCC 49185] Length = 446 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/149 (11%), Positives = 51/149 (34%), Gaps = 10/149 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + E ++L + + + + L+ + N + ++ + + + Sbjct: 2 PEIENLRKIPSDLEAERSVLGGIFLKQDVFGDIIEILSPDDFYKNAHKIIYETMREIYNK 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + P + RL + ++ D + + E Y + + + Sbjct: 62 GEPLDPLVVMNRLRKS------EKFDEVGGEQIFYDIVEEVPTAANITAYAKIV----KE 111 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + + R+ ++ +I ++T G E IL Sbjct: 112 KAILRRLGDVGTKIVEMTYSGYEEAENIL 140 >gi|326332085|ref|ZP_08198370.1| ATP-dependent protease La [Nocardioidaceae bacterium Broad-1] gi|325950223|gb|EGD42278.1| ATP-dependent protease La [Nocardioidaceae bacterium Broad-1] Length = 774 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 67/210 (31%), Gaps = 17/210 (8%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALL 488 +R+ + K + ++ + K E L+ Sbjct: 63 ERVGRFRGGEPAAVLRAVGRAKIGSGVTGPGAALWVEVEPATETTTEHAKELAEEYKRLV 122 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + ++ ++ + + + Y E + L E Sbjct: 123 VAVLQRREAWP-VIDQVNRLTEPSE--------IADTAGYAPYLDDEAKRELLETPDVEE 173 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L+++ +D S ++ DVR+G ++ +R LL +Q I K++ + + Sbjct: 174 RLEKVIAWAKDHIAESEVSDKIAEDVREGMEKT----QREFLLRQQLAAIRKELGEGEPE 229 Query: 609 GEAE-KTAILISILHEVHIQ--IHQIESQE 635 G + + + + L E + + +++ E Sbjct: 230 GSEDYRARVEAADLPEAVREAALREVDKLE 259 >gi|225028180|ref|ZP_03717372.1| hypothetical protein EUBHAL_02452 [Eubacterium hallii DSM 3353] gi|224954492|gb|EEG35701.1| hypothetical protein EUBHAL_02452 [Eubacterium hallii DSM 3353] Length = 449 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ E ++L +++ + E L + + ++ + Sbjct: 2 PTVDENFVKRIQPHSEEAERSVLGSMLMDRDAIVEAEDILTKEDFYQRQYGIVFEAMVEL 61 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + E K + +L E+ E L LD Sbjct: 62 YREGKAVDLITLQNKLKEKEVPEELMSLD 90 >gi|301762642|ref|XP_002916757.1| PREDICTED: coiled-coil domain-containing protein 88B-like [Ailuropoda melanoleuca] Length = 2139 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 79/237 (33%), Gaps = 24/237 (10%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG-RYWKKNARHR 457 +E + + + LR + + L QL ++ E G R+ A R Sbjct: 934 EEEVRVARQCQEETRGQQQALLRDH------EALAQLQRRQEAELEGLLVRHRDLKANMR 987 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLL---TLINHPAILQEQYQELADIRYDNNE 514 + + L +E ALL L+ + +EL ++ +++ Sbjct: 988 ALELAHRELQGRHEQLQAQRASVEAQEMALLAERERLMQDGHRQRGLEEELRRLQSEHDR 1047 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 QKL + + + E + GEL +L R + ++ Sbjct: 1048 AQKLLAEVSRERGELQG-------------ERGELRGRLARLELERAQLEVQSQRLRESN 1094 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +Q A L + LSR+ E+ ++ + E+ + L+ + + ++ Sbjct: 1095 QQLDLSACRLTTQCEALSRENRELLERSLESRDHLHREQ-REYLDQLNALRREKQKL 1150 Score = 38.7 bits (88), Expect = 2.9, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 23/220 (10%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + ++ R QL ++ + G + G L++ + S Sbjct: 814 KEEALRELKTRALQLEEELVQLRQGPDGLGSEGHLEPRTPGAQS----GRLIEVERSNAT 869 Query: 481 SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E L + H L ++ + Q+ E+ Sbjct: 870 LVAEKVALQGQLQHLEGQLGSLQGRAQELLLQSQRAQEF----------SSRLQAEKSVL 919 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + L L+ +VR A T + + +ALA +R RQ+ E+E Sbjct: 920 ELQGQELHKKLGVLEEEVRVARQCQEETRGQQQALLRD-HEALAQLQR-----RQEAELE 973 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + L E+ + Q+++Q A +E Sbjct: 974 GLLVRHRDLKANMRALELAH--RELQGRHEQLQAQRASVE 1011 >gi|118474379|ref|YP_892150.1| replicative DNA helicase [Campylobacter fetus subsp. fetus 82-40] gi|118413605|gb|ABK82025.1| replicative DNA helicase [Campylobacter fetus subsp. fetus 82-40] Length = 466 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 45/154 (29%), Gaps = 4/154 (2%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L ++ L E Y + + ++ + + + +RL Sbjct: 15 ERSILSAILFSEDNLGEIYDLINPSDFYLKGHADVYGAMIECLNHDEPVDMAFVKKRLAN 74 Query: 544 RGFGELLKQLDRQVRDAGLW---SATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIE 599 + ++ + + E +I + SR ++I Sbjct: 75 NFDDTVFTEIITTNSILDIKKYATELKEKSIKRSLINVAHKIPNKVNEDKASRDMVDDIS 134 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +I + I+ +V ++ + ++ Sbjct: 135 GEIYSLVDNSNNGIIKESKEIITDVIKELEKQKN 168 >gi|291524660|emb|CBK90247.1| RecA-family ATPase [Eubacterium rectale DSM 17629] Length = 633 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 13/114 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 M Y ++ I IS L Q R HD S +K Sbjct: 1 MYYTQEQIDRANQADLISFLQSQGEQLTRAGNEYRWKR-------HD----SLTIRGNK- 48 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 +Y S G + F+ G SF E+V+ L G P P + + Sbjct: 49 -WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPSLAPLSDFR 101 >gi|225903404|ref|NP_001139625.1| homer protein homolog 3 isoform 1 [Mus musculus] gi|148696860|gb|EDL28807.1| homer homolog 3 (Drosophila), isoform CRA_b [Mus musculus] Length = 359 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 16/211 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 RL + + E + G + + + L + + + P E L Sbjct: 112 AARLAREKSQDGGEFTSTGLALASHQVPPSPLVSTNGPGEEKLFRSQSADTPGPTERERL 171 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 +++ ++ + Q++ + Q+L L + + QR + Sbjct: 172 KKMLSEGSVGEVQWEA-EFFALQD-SNQRLAGALREANAAATQWRQQLEVQRAEAELLRQ 229 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + +L+ QV + + EA V Q L R + ++ + ++ Q Sbjct: 230 RVAELEAQVAVEPVRAGEKEATSQSVEQ-------LEARVQTKDQEIQTLKNQSTGTREA 282 Query: 609 GEAEKTAILISILH-------EVHIQIHQIE 632 + + + E+ Q+ +E Sbjct: 283 PDTAEREETQQQVQDLETRNAELEQQLRSME 313 >gi|257452710|ref|ZP_05618009.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R] gi|257466571|ref|ZP_05630882.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|315917726|ref|ZP_07913966.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563] gi|317059251|ref|ZP_07923736.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R] gi|313684927|gb|EFS21762.1| replicative DNA helicase [Fusobacterium sp. 3_1_5R] gi|313691601|gb|EFS28436.1| replicative DNA helicase [Fusobacterium gonidiaformans ATCC 25563] Length = 446 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 57/170 (33%), Gaps = 11/170 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 +L + E A+L + P + +E + ++ + N ++ + + E Sbjct: 2 KTLEEISKIPHSLEAEQAILGGIFVEPDLFEEVLEIVSPEDFYKNMYSVIFRSMLEVYRE 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 I +L + Q + + + + A + Sbjct: 62 SNEIDMVLIKNKLLQ----------VHQFTEEQINEELSNILENSFSAVNLKEYARLVKE 111 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + + R+ E ++I ++ + + + ++ + +++ Q + + +I Sbjct: 112 KAILRRLGEAGRKITEIAYRDDRD-AEDILDEAESIVLKVDQQKKGKEII 160 >gi|167628738|ref|YP_001679237.1| hypothetical protein HM1_0621 [Heliobacterium modesticaldum Ice1] gi|167591478|gb|ABZ83226.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 501 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 63/463 (13%), Positives = 115/463 (24%), Gaps = 91/463 (19%) Query: 7 FIKDLLIH---IPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 F + I I++ + + R + HD + Sbjct: 7 FTDEQKRRANSIDIADFLRRQGEQLTRAGRDWRWKR-------HD------SVTIRGNQW 53 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESV-QRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y S G + F+ G SF E+V L GV K L + Sbjct: 54 YRHSREEGGLAIDFVREFYGLSFPEAVTLLLGGEGGVEWNQTHKSAPAPRKPFA-LPEMN 112 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 + + +K R + + K E Sbjct: 113 SDMRRVYAYLIKQRF---------------------------IDRDVIAHFAKSKMLYES 145 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK-GESVKYLNSPETI 240 A + +F G R L G S + Sbjct: 146 CERSADKTKEYH-----------NAVFVGYDENGVPRHAHKRGLYTVGGSYRGNVEGSDP 194 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS---LCQAGVQNVVSS 297 + ++ + + E +D+LS L + Sbjct: 195 AYSFHHI---------------------GANDTLYVFEAPIDMLSFITLYPEDWKQNSYV 233 Query: 298 LGTALTEYQLRL---LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 + E+ L L ++VLC D D+ G+ AA + ++ G R V Sbjct: 234 ALDGVAEHALLRQLELNPRLQKVVLCLDHDEAGIEAAGRLAEI---LNARGCRKVPVRQP 290 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS---FNTPDERAELEIHLKNC 411 +D + ++ A +T + A L H + Sbjct: 291 EYKDWNEDLKAKNGVAPIPAQGHPKLEALPEICAGLYETCKSLISTHNPYAMLLEHYEKL 350 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA 454 I + KL + A+ + L+ + + R ++ A Sbjct: 351 KPLIANGKLPQGKAPAVTEHLRVMAAAALLAAQRQYRQMEQPA 393 >gi|291164858|gb|ADD80888.1| gp102 [Rhodococcus phage ReqiDocB7] Length = 620 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 39/131 (29%), Gaps = 15/131 (11%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF--HDEKTPSFHCNDSKGF 61 + DL+ I + ++V R CP H + PS N + Sbjct: 41 SDKALDDLIDRISFAEAYDKWVGKKREPEGFKDESIMISCPIPGHVDNNPSAWYNRIEKL 100 Query: 62 YYCFSCHVKGDHLSFLSALLGC--------SFIESVQRLAAIAGVPLPVVDP-----KIE 108 ++C +C GD + S SF + + + G + E Sbjct: 101 WHCMACGKGGDIWTIASYHFNIPDYQTNPQSFHDLRREIGKSYGWSFENENGYLVGYSPE 160 Query: 109 KKEKIQTDLIR 119 ++ +L Sbjct: 161 ERATRAKELEE 171 >gi|61098173|ref|NP_848801.2| centrosomal protein of 120 kDa [Mus musculus] gi|81886139|sp|Q7TSG1|CE120_MOUSE RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120; AltName: Full=Coiled-coil domain-containing protein 100 gi|31418418|gb|AAH53439.1| Centrosomal protein 120 [Mus musculus] Length = 988 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 648 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 705 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L +L + S ++ + ++ + + +Q S+ + + Sbjct: 706 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 765 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L L LQ+Q + + L+K + + + Sbjct: 766 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 822 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 823 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 879 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E E L ++ +++++ QE Sbjct: 880 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 917 >gi|332831350|ref|XP_520008.3| PREDICTED: LOW QUALITY PROTEIN: plectin [Pan troglodytes] Length = 4684 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 98/286 (34%), Gaps = 20/286 (6%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH---IKD 417 + ++L E+ + E + S E N ++D Sbjct: 2336 DHQKNLLDEELQRLKAEATEAARQRSQVEEQLFSVRVQMEELSKLKARIEAENRALILRD 2395 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + Q ++++Q+ ++ + + + L + L + + Sbjct: 2396 KDNTQRFLQEEAEKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQA 2455 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + + R A L + QEQ + L + + +++ L E + F Sbjct: 2456 VQEATRLKAEAELLQQQKELAQEQARRLQEDK------EQMAQQL---AEETQGFQRTLE 2506 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +R + ++L +V + A E + R+ ++ R L +++K Sbjct: 2507 AERQRQLEMSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEEIGEKLHRTELATQEKVT 2566 Query: 598 IEK--QIAQVTAKGEAEKTAILISIL------HEVHIQIHQIESQE 635 + + +I + + +AE+ I+ L + ++ Q++S+E Sbjct: 2567 LVQTLEIQRQQSDHDAERLREAIAELEHEKEKLQQEAKLLQLKSEE 2612 Score = 41.4 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 83/274 (30%), Gaps = 19/274 (6%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 IR +T + + L +RE + + AEL + + Sbjct: 1850 QELIRLRAETEQGEQQRQLLEEELARLQREAAAATQKRQELEAELAKVRAEMEVLLASKA 1909 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 S++ ++ +Q + + ++ ++L + + + + Sbjct: 1910 RAEEESRSTSEKSKQRLEAEAGRFRELAEEAARLRALAEEAKRQRQLAEEDAARQRAEAE 1969 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS------FLFSDFVEQKYFL 533 L E L + + E L + +N L++L + Q Sbjct: 1970 RVLAEK--LAAISEATRLKTEAEIALKEKEAENERLRRLAEDEAFQRRRLEEQAAQHKAD 2027 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 EE +L + EL E + RQ ++ LAL F + Sbjct: 2028 IEERLAQLRKASDSEL-----------ERQKGLVEDTLRQRRQVEEEILALKASFEKAAA 2076 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 K E+E ++ ++ + E + + L + Sbjct: 2077 GKAELELELGRIRSNAEDTLRSKEQAELEAARQR 2110 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 20/193 (10%), Positives = 55/193 (28%), Gaps = 23/193 (11%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 R ++ + + + ++ + E L + + + ELQ Sbjct: 2295 RQKQAADAEMEKHKKFAEQTLRQKAQVEQELTTLRLQ-------LEETDHQKNLLDEELQ 2347 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT--------- 567 +L + ++ + R+ +L +++ + R L Sbjct: 2348 RLKAEATEAARQRSQVEEQLFSVRVQMEELSKLKARIEAENRALILRDKDNTQRFLQEEA 2407 Query: 568 ----EANIVDVRQGYQQALALYKR---FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 + R A R L++Q+ EK + + + + Sbjct: 2408 EKMKQVAEEAARLSVAAQEAARLRQLAEEDLAQQRALAEKMLKEKMQAVQEATRLKAEAE 2467 Query: 621 LHEVHIQIHQIES 633 L + ++ Q ++ Sbjct: 2468 LLQQQKELAQEQA 2480 Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + + ++Q + ++ E Q+ + L +Q++ +E+++A Sbjct: 1815 KAEEQAVRQRELAEQELEKQRQLAEGTAQQRLAAEQELIRLRAETEQGEQQRQLLEEELA 1874 Query: 604 QV--TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ A +K L + L +V ++ + + +A E Sbjct: 1875 RLQREAAAATQKRQELEAELAKVRAEMEVLLASKARAE 1912 Score = 37.6 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 28/271 (10%), Positives = 80/271 (29%), Gaps = 29/271 (10%) Query: 392 NRSFNTPDERAELEIHLKNCINHIK------DQKLRYYYSQA--IRDRLQQLFQKYITEH 443 + D + I+ Q +R Q + + + + + + E Sbjct: 1347 RYYRESADPLGAWLRDARRRQEQIQAMPLADSQAVREQLRQEQALLEEI-ERHGERVEEC 1405 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + + + + + + + + + K +++ + + + Sbjct: 1406 QSFAKQYINAIKDYELQLVTYKAQLEPVASPAKKPKVQSGSESVIQ---EYVDLRTRYSE 1462 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLW 563 + ++ + L E++ + +R L++ + Sbjct: 1463 L---TTLTSQYIKFISETLRRMEEEERLAEQQRAEERERLAEVEAALEKQRQLAEAHAQA 1519 Query: 564 SATTEANIVDVRQGYQQALALYKRF-RLLSRQKEEIEKQIAQVTAKGEAE---------- 612 A E +++Q Q+ + + +QK I++++ Q+ EAE Sbjct: 1520 KAQAEREAKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQAEA 1579 Query: 613 ---KTAILISILHEVHIQIHQIESQEAMIEG 640 + + V +Q+ E Q EG Sbjct: 1580 AERSRLRIEEEIRVVRLQLEATERQRGGAEG 1610 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 64/212 (30%), Gaps = 19/212 (8%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 LQQ Q+ + ++ R ++ R + ++ K + E + L Sbjct: 1527 AKELQQRMQEEVVRREEAAVDAQQQKRSIQEELQQLRQSSEAEIQAKARQA-EAAERSRL 1585 Query: 489 LTLINHPAILQEQYQELADIRY----DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 ++ +L ELQ L + +++ E +RL + Sbjct: 1586 RI----EEEIRVVRLQLEATERQRGGAEGELQALRARAEEAEAQKRQAQEEA--ERLRRQ 1639 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E ++ + A A EA R + L Q EE E+++ Q Sbjct: 1640 VQDESQRKRQAEAELASRVKAEAEAAREKQRA--------LQALEELRLQAEEAERRLRQ 1691 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + + L + ++ + A Sbjct: 1692 AEVERARQVQVALETAQRSAEAELQSKRASFA 1723 >gi|324998554|ref|ZP_08119666.1| replicative DNA helicase [Pseudonocardia sp. P1] Length = 470 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/150 (10%), Positives = 44/150 (29%), Gaps = 11/150 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + + + L + Q ++ + + + Sbjct: 33 RQPPQDLTAEQSVLGGMLLSKDAIADVVEVLRPEDFYRPAHQTVYETILDLYGRGEPADA 92 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L RG +L R L + Y + + + + R+ Sbjct: 93 VTVSAELQRRG------ELVRLGGAPYLHTLIATVPTAANAAYYAEIVG----EKAILRR 142 Query: 595 KEEIEKQIAQVTAKGEA-EKTAILISILHE 623 E +I Q+ G + ++ Sbjct: 143 LVEAGTRIVQLGYHGNEGGEVEEVVDRAQA 172 >gi|325299324|ref|YP_004259241.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|324318877|gb|ADY36768.1| DNA primase [Bacteroides salanitronis DSM 18170] Length = 316 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 Y ++ N W PF +E PSF N + ++ F G+ + Sbjct: 20 YFPVKQQGVNL-----WYKSPFREENEPSFKVNTEREQWFDFGLEKGGNII 65 >gi|148677957|gb|EDL09904.1| expressed sequence AU016693, isoform CRA_c [Mus musculus] Length = 1001 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 661 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 718 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L +L + S ++ + ++ + + +Q S+ + + Sbjct: 719 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 778 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L L LQ+Q + + L+K + + + Sbjct: 779 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 835 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 836 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 892 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E E L ++ +++++ QE Sbjct: 893 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 930 >gi|312890210|ref|ZP_07749751.1| DNA primase [Mucilaginibacter paludis DSM 18603] gi|311297322|gb|EFQ74450.1| DNA primase [Mucilaginibacter paludis DSM 18603] Length = 338 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 27/103 (26%), Gaps = 21/103 (20%) Query: 2 NYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 N D IK++L + +++ D+W P E T SF N K Sbjct: 10 NIGPDEIKEILNRVRDMDMVSYLSKLGYEPVKVSGNDHWYLSPLRSESTASFKVNRLKNQ 69 Query: 62 YYCFSCHV--------------------KGDHLSFLSALLGCS 84 + F G + F + Sbjct: 70 WIDFG-GRPTPEALAKAQKYNRKPPEFNGGTLVDFAMQHNNWT 111 >gi|302531306|ref|ZP_07283648.1| replicative DNA helicase [Streptomyces sp. AA4] gi|302440201|gb|EFL12017.1| replicative DNA helicase [Streptomyces sp. AA4] Length = 465 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 24/71 (33%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E ++L ++ + + + L + Q ++ + + + P Sbjct: 26 RQPPQDIAAEQSVLGGMLLSKDAVADVIEALGPGDFYRPAHQAVYDCILDLYGRGEPADP 85 Query: 535 EEIHQRLCERG 545 + L RG Sbjct: 86 ITVAAELERRG 96 >gi|319763792|ref|YP_004127729.1| replicative DNA helicase [Alicycliphilus denitrificans BC] gi|330823944|ref|YP_004387247.1| replicative DNA helicase [Alicycliphilus denitrificans K601] gi|317118353|gb|ADV00842.1| replicative DNA helicase [Alicycliphilus denitrificans BC] gi|329309316|gb|AEB83731.1| replicative DNA helicase [Alicycliphilus denitrificans K601] Length = 492 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 15/181 (8%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + ++ E+++L L+ L D + +E Q+++S + + Sbjct: 37 PPDREVAQLRVPPHSIEAESSVLGGLLLDNMAWDRVGDLLVDGDFYRHEHQQIYSAIGAL 96 Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVR---- 575 K +++ L G E L L + V A E Sbjct: 97 INASKPADVITVYEHLQGLGKAEETGGLAYLNSLAQYVPSASNIRRYAEIVRERAILRKL 156 Query: 576 ---QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQ 630 A + R + R +E E++I + +G + L S++ ++ ++ + Sbjct: 157 VTASDEIATNAFNPQGRPVERILDEAEQKIFAIGEEGSRMKQGFQSLDSLVIDLLDRVQE 216 Query: 631 I 631 + Sbjct: 217 M 217 >gi|88658191|ref|YP_507269.1| replicative DNA helicase [Ehrlichia chaffeensis str. Arkansas] gi|88599648|gb|ABD45117.1| replicative DNA helicase [Ehrlichia chaffeensis str. Arkansas] Length = 488 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/173 (9%), Positives = 55/173 (31%), Gaps = 15/173 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ---KYFLPEEIHQ 539 E LL +++ I + + ++ ++++ + + Sbjct: 24 AEQILLGSMLRDNRICDAVEDIITSDVFFDSLHRRIFEQIVKINKRGLVANEVSLKMFFD 83 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------F 588 + + L + A + + V ++ L + + Sbjct: 84 NDEDLIESGGVDYLAKIAAKASIIFDIKNVANIVVDTYLRRCLISFGQDLISGAYNYDVD 143 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEG 640 Q E +++ + +G+++KT ++L + +I ++ E ++G Sbjct: 144 NSAVYQIESAAQKLFLLGNQGKSDKTYHQFALLVANIKKRIEFAKNNEGTLQG 196 >gi|327280089|ref|XP_003224786.1| PREDICTED: periplakin-like [Anolis carolinensis] Length = 1756 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 32/267 (11%), Positives = 91/267 (34%), Gaps = 21/267 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + ++ R E +N + ++++ + + I++ ++ Sbjct: 1181 DPQTENEVANLRLELVEQERRYRGGEEQLKSCQNELAALRNRGPQVEVQEVIKEVIKYKT 1240 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + R + ++ + ++ KP ++ ++ ++ + Sbjct: 1241 DPETEQELQNLRDEIVDRTRAIERADLEIYQLKQEIQMLKEAKPQVQMKEVVQEVLQYRE 1300 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 Q + + + L + L + + E Q R E L Q+ + Sbjct: 1301 DPQTREEV-----------ESLRAQLAEEQKKHMDLERERQIQEERIREKEEELSQVKEK 1349 Query: 557 VRDAGLWSATTEANI--------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 V + + + ++ Q +L R L R++ E+E+Q+ ++ + Sbjct: 1350 VVQQEVVKLEQDPALKAEISCFSQNIESELHQIDSLRNEMRKLQRRRSELERQLDELEKE 1409 Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635 +A + A L + + I++ ++E QE Sbjct: 1410 RQARREAEL--EVQRLKIRLSELEEQE 1434 Score = 37.9 bits (86), Expect = 4.7, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 99/278 (35%), Gaps = 11/278 (3%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + A + +++L L K++ + + + + E L+ K+ + Sbjct: 844 AKFTEVNAVNRQRLQNLEFAQNLLKQQPDVQLMQESVQSSRSERPLEEIWKLRKELEDES 903 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Q + + ++ + + + + +K P +L S + + Sbjct: 904 QRRQQLEEEIKVIQENILL-LQNQKPQESLVTKEVVKKVPDPQLEDSFYKMQQNFAEEQR 962 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L N L+ + + L + + + + L + + + ++ + L Sbjct: 963 KNQELQ----NELEALKLKLRTLEHEKREGAQEYVVKEVLRIEPDKAQAEEILKLKEELE 1018 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E +Q D + + + + E N + ++ L L + L + +++++ Sbjct: 1019 DLRRQEGSRQNDMLLLRRQIATLSDEKNKEQEKVTEKEVLKL-QNDPQLESEYQQLQESK 1077 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + ++ + ++ L + ++ Q+E + M EG Sbjct: 1078 QRESSLRQQQE-----EELRFLQAKLKQLEKERVMAEG 1110 >gi|299141193|ref|ZP_07034330.1| mobilizable transposon protein [Prevotella oris C735] gi|298577153|gb|EFI49022.1| mobilizable transposon protein [Prevotella oris C735] Length = 314 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 P ++ PSF K + ++ G + L GC+ +E++ L A Sbjct: 23 SPLREDMHPSFKVETEKNLWIDYAEGRGGSIIDLCMRLEGCTLLEAIHLLGRNA 76 >gi|291460484|ref|ZP_06599874.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str. F0262] gi|291416856|gb|EFE90575.1| replicative DNA helicase [Oribacterium sp. oral taxon 078 str. F0262] Length = 449 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 56/167 (33%), Gaps = 10/167 (5%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S + ++ E +++ +++ + + L++ + + L+ + + E Sbjct: 5 SEKLIQRVIPHSQEAEQSVIGSMLRDKEAVAAATELLSEEDFYQRQYAILFRVMRELYNE 64 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 K + ++L + L ++ E ++ + Sbjct: 65 AKPVDLVTVQEKLRGKDIPPELSEIA----------FLKEVMQSVATSVNVRSYCSIVKE 114 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + R ++IA++ G E +L ++ + + ++E Sbjct: 115 KSVLRALIRANEEIAELCYSGGEELEEVLSIAEKKIFDLLQKRSARE 161 >gi|298491669|ref|YP_003721846.1| replicative DNA helicase ['Nostoc azollae' 0708] gi|298233587|gb|ADI64723.1| replicative DNA helicase ['Nostoc azollae' 0708] Length = 602 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 10/140 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 +L + E A+L ++ P + L + N + ++ + + K Sbjct: 13 NRLPPQNIEVEEAILGGILLDPEAISRIRDRLVLEAFYINAHKDIYQAALTLHAQNKPTD 72 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + L ++ + + A L T A +D G + L R Sbjct: 73 LLSLTNWLTDNDK---LTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRR 122 Query: 594 QKEEIEKQIAQVTAKGEAEK 613 Q + +I Q+ + E E Sbjct: 123 QLIKAGNEIVQLGYETETEL 142 >gi|161044|gb|AAA29905.1| myosin heavy chain [Schistosoma mansoni] Length = 1940 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 897 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 956 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 957 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1010 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 1011 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1070 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 1071 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1127 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1128 ELEEVVDRLEEQDGATAA 1145 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + E + + + ++ L KN + I D Sbjct: 1440 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1499 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477 + + + ++ E ++ +Q+ + Q S ++ ++ Sbjct: 1500 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1559 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ + +E T NH ++ Q L E ++ L D E + L Sbjct: 1560 RRLAEKEEEFEATRKNHQRAMESQQASLEAEGKGKAEAMRVKKKLEQDINELEVSLDGAN 1619 Query: 538 HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587 R + EL QL+ R +A G L + Sbjct: 1620 RARAEQEENVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1679 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 SR+ E E+ A A + +TA L + ++ + +++ +EA E Sbjct: 1680 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1733 Score = 39.5 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E A Sbjct: 1091 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1149 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 1150 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1209 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ ++T + + Sbjct: 1210 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1269 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612 V + +Q + L++ K+++ Q+ + E E Sbjct: 1270 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1329 Query: 613 --KTAILISILHEVHIQIHQIESQ 634 S ++ Q+ +++ + Sbjct: 1330 RETLEEEQSAKGDLQRQLQKLQGE 1353 >gi|224824989|ref|ZP_03698095.1| replicative DNA helicase [Lutiella nitroferrum 2002] gi|224602660|gb|EEG08837.1| replicative DNA helicase [Lutiella nitroferrum 2002] Length = 471 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 48/158 (30%), Gaps = 10/158 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S S+ + + E ++L L+ + + + + + ++ + ++ + Sbjct: 7 STEYFDSATAAVRTPPQSIEAEQSVLGGLLLDNSAWDKIADVVGEADFYRHDHRLIYKHI 66 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + + L + G + L A + + Sbjct: 67 AKLVEHSRPADVVTVLESLDKSGESGAVGGLAYLATLAQNTPSAANI----------RRY 116 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 A R R + RQ ++ +IA+ A L+ Sbjct: 117 AEIVRERSIMRQLAQVGTEIAEAAYAPMGRDAAQLLDE 154 >gi|332143164|ref|YP_004428902.1| replicative DNA helicase [Alteromonas macleodii str. 'Deep ecotype'] gi|327553186|gb|AEA99904.1| replicative DNA helicase [Alteromonas macleodii str. 'Deep ecotype'] Length = 414 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 10/143 (6%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 S +++ K K+ E ++L +++ P + + + D + N Q ++ Sbjct: 2 ASASKNDNNVEKLKVPPHSIEAEQSVLGSMLIDPESWDKVAELVTDNDFYNRSHQIIFRA 61 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + L + +L+ A L Y Q Sbjct: 62 ITRLLNSSQPIDLITVSEELEKH------DELEDAGGFAYLGELAKNTPSSANVVSYAQI 115 Query: 582 LALYKRFRLLSRQKEEIEKQIAQ 604 ++ R ++R+ + +IA+ Sbjct: 116 IS----ERAITRELIGVAHEIAE 134 >gi|325829858|ref|ZP_08163316.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1] gi|325488025|gb|EGC90462.1| efflux ABC transporter, permease protein [Eggerthella sp. HGA1] Length = 1177 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 68/229 (29%), Gaps = 21/229 (9%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476 + DR++ L + + K+ R++ +L + Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYERERADAQSQLDDAKRQLDDA 311 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + E L + + E A Q+L + + + Sbjct: 312 AATIAASEQELADGQAAYDSGASELASRRASAE------QQLADA--ERQIAEGQAQLDA 363 Query: 537 IHQRLCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 +L + ++ D G W ++ + + Sbjct: 364 QRPQLDDAAGQLQAARVQWQQGADALAAAWGDWQRQSDELDAGITRAQAGVADAAAGVDR 423 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + +E+QI Q+ +A+K A L + + Q + +Q A+++ Sbjct: 424 IQKGIDALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472 >gi|314922008|gb|EFS85839.1| replicative DNA helicase [Propionibacterium acnes HL001PA1] Length = 448 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 10/147 (6%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + E ++L ++ + + +E+ + + + +++ + Sbjct: 5 PAEPGPSLDRNPPQDIDAEKSVLGAMLFSKDAIADVVEEIKGVDFYRPGHELIFNTITDL 64 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L RG +L+R L T + Y + +A Sbjct: 65 YGRGDPADTVTTADELDRRG------ELERAGGRLYLAELLTNVTVTANAAYYAKIVA-- 116 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + R+ E +IAQ+ +G+ E Sbjct: 117 --EKAVLRRLVEASIRIAQMGYQGQGE 141 >gi|301118911|ref|XP_002907183.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262105695|gb|EEY63747.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 2213 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 43/339 (12%), Positives = 108/339 (31%), Gaps = 18/339 (5%) Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L ++ + F+ A + L L ++ G + Sbjct: 1382 LQEVMRQATDQFETQKHSAAMATEDGRTQLQKLTAQLVQRDAQMTEGH----QQLRRMQE 1437 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 L + + +N N + E + LR + + Sbjct: 1438 MVRSLEEKLRTQQYESESLQMKNDQLNGQLDALRNEKRGLEHVMRRHTSTLRDGLEEDLS 1497 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 RL++L + + D K S +L SS + KL ++ + + L + Sbjct: 1498 QRLERLARDMERRVQEESEKTAQLQSVLDSKLDS-QLQHSSEERTKLEQENARLQRELEM 1556 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLC-ERG 545 L++ EL ++ + E ++L S L + + E + + + Sbjct: 1557 YAAE----LEKMDAELLQLQREREEQERLLSDLQQTIATYEEDQRTRNNANDDFIRLDAV 1612 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 EL ++ +D E + +++ + + + + ++R + Q Sbjct: 1613 HSELKTTHEQFKQDLVAQLREKEKEVAELQDEMTELQSKLDQEKEMTRHLMDRSHADKQQ 1672 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIE-----SQEAMIE 639 AK +E ++ E+ + +++ +++A ++ Sbjct: 1673 HAKELSEAEEKQLNRAKEMEASMKELQHKLRANEQAAVD 1711 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 41/386 (10%), Positives = 106/386 (27%), Gaps = 46/386 (11%) Query: 291 VQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 + L + L + + ++ D A D + + + Sbjct: 1562 EKMDAELLQLQREREEQERLLSDLQQTIATYEEDQRTRNNAN---DDFIRLDAVHSELKT 1618 Query: 351 VLLSRGEDPDSFIRCYGKT--AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 +D + +R K + + E +D + + D++ + Sbjct: 1619 THEQFKQDLVAQLREKEKEVAELQDEMTELQSKLDQEKEMTRHLMDRSHADKQQHAKELS 1678 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + + K + ++ +L+ Q + + + + + +++ + Sbjct: 1679 EAEEKQLNRAKEMEASMKELQHKLRANEQAAVDREHMRVKELEASVKRLERELQVSQQSM 1738 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + + +K RE + + E + + E++ L + E Sbjct: 1739 TGKEQSAMHEKLQ-REREHRALQTRYDTLDAENAANVHKMDTKVEEIEHLHGEIDQLHEE 1797 Query: 529 QKYFLPE---------EIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIV-- 572 + E L EL +L + +A A A Sbjct: 1798 IERLNEEVRDNTAEMDNARNHLHVSEQLTMKLEELQDELAAREDEARRRDADLAAKEEKL 1857 Query: 573 ----DVRQGYQQALALYKRFRL-----LSRQKEEIEKQIAQVTAK----GEAEKTAILIS 619 DV + ++ L R L +Q ++ +Q+ + + + Sbjct: 1858 QLARDVEEELKRQLRDNVRRNEDEAASLKQQNAKLREQLKRAAQAKLSVEDDAARETAMK 1917 Query: 620 IL-----------HEVHIQIHQIESQ 634 L E+ Q+ Q+E Sbjct: 1918 NLEKAYDDSVQREQELTSQLAQLEDS 1943 Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 90/298 (30%), Gaps = 18/298 (6%) Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + + + A + + + L ++ + A+ Sbjct: 983 QEHVDRMAQEHEKQLAEQHKYRGEVEAERQRLTQVLQQESTRFQNLRKEAGEARAQIEAQ 1042 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 +K + D+K R + ++ + ++ ++ I + N R + G Sbjct: 1043 AMAAMKQREQQLLDEKARVE--EELQLQFSKINEENIELRATVDNLKDINRRKSTEIGRL 1100 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 Q + + + + + + L + ++ + LA ++E KL S F Sbjct: 1101 MATSQEAEQQIQSRMQEAQKMQQLTEEVARAKQQMETLSKTLAAKESAHDEAMKLQSAEF 1160 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + + +L ++ + ++ ++ + + Sbjct: 1161 ENQYNDFVSQVEGQFNEMTQEN-EQLRSDIEEAAKKLTMYEGQVTVGGEELNKWRSECEK 1219 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 L + +R+ E +++++ L E+ + + A IE F Sbjct: 1220 LQHQLHEGARENESLKRELE---------------HRLQELEQRHKENAELNARIEQF 1262 >gi|296125263|ref|YP_003632515.1| replicative DNA helicase [Brachyspira murdochii DSM 12563] gi|296017079|gb|ADG70316.1| replicative DNA helicase [Brachyspira murdochii DSM 12563] Length = 467 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +LL ++ + + ++ + + + L+ + E + L Sbjct: 10 AEESLLGAMLQNSQAISAALSKIKSTDFYSERNRLLYESIIEMNNRGIAVNAETTLRYLK 69 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E G E + Q D +A L + Y + +A R L ++I+K Sbjct: 70 ENGLFEKIIQND----EAYLMRIIDGTPFHQNAKYYAEIIAEKSLLRDLITAAQDIQKSA 125 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 + E + EV + Sbjct: 126 YEAKDAETKEIADFAEKKIFEVTQRR 151 >gi|331655767|ref|ZP_08356756.1| replicative DNA helicase [Escherichia coli M718] gi|331046541|gb|EGI18630.1| replicative DNA helicase [Escherichia coli M718] Length = 456 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + + ++++S + K + + L Sbjct: 17 AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 76 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 77 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 127 AEAGYAQDGRGSNELL 142 >gi|224046178|ref|XP_002195468.1| PREDICTED: similar to TBP associated factor [Taeniopygia guttata] Length = 745 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCER 544 L + ++ AD + + L+ L S + + + Sbjct: 512 YILATNSELIGTVIHSCADEPFLS--LEALQSKIMNIGKRHDIMELNSDVVNFISHATQE 569 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ--- 601 LL++L + ++ I V + L ++ L +Q+++ E++ Sbjct: 570 RLRGLLEKLTVIAQHRVSTHKGSDKYI--VCSDTRAQLRFLEKLDHLEKQRKDEEEREML 627 Query: 602 IAQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636 + ++ E + L E+ ++ Q++ +EA Sbjct: 628 LRAAKSRSNKEDPEQLRLKQKAKEMQQLELAQMQQREA 665 >gi|94501360|ref|ZP_01307880.1| replicative DNA helicase [Oceanobacter sp. RED65] gi|94426473|gb|EAT11461.1| replicative DNA helicase [Oceanobacter sp. RED65] Length = 457 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 10/130 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ E ++L L+ + + L + + +++++ + E+K F Sbjct: 9 KMPPNSVDAERSVLGGLMLDNRAFETVSERLIPADFFRTQHRQIYTIIGKLAEEEKPFDV 68 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L E + L ++ + L +T A Y + + + L R+ Sbjct: 69 LTLSDELQE---IDALAEVGGLEYLSELVESTPSAA---NIAAYADIV----KEKSLLRR 118 Query: 595 KEEIEKQIAQ 604 E IA+ Sbjct: 119 LAEAATDIAE 128 >gi|260871197|ref|YP_003237977.1| replicative DNA helicases [Escherichia coli O111:H- str. 11128] gi|257767776|dbj|BAI39269.1| replicative DNA helicases [Escherichia coli O111:H- str. 11128] Length = 454 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + + ++++S + K + + L Sbjct: 15 AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 74 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 75 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 125 AEAGYAQDGRGSNELL 140 >gi|307945027|ref|ZP_07660363.1| putative replicative DNA helicase [Roseibium sp. TrichSKD4] gi|307770900|gb|EFO30125.1| putative replicative DNA helicase [Roseibium sp. TrichSKD4] Length = 466 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 50/133 (37%), Gaps = 6/133 (4%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + + + E ++L +L+++P+ E + L + Q+++ + S K Sbjct: 1 MQNNDKVHQTIMAERSVLGSLLDNPSAYFEVLETLKAEHFIRPINQRIYEAMGSILSAGK 60 Query: 531 YFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + R+ + + L L +R++ + + VD+ +A AL Sbjct: 61 KASLNLLVARIGDEYEEDGRDGLLTLNYLTALLRESQSGETVSPMDFVDIIVDAWRARAL 120 Query: 585 YKRFRLLSRQKEE 597 + + ++ + Sbjct: 121 DETANWVKKELAK 133 >gi|331649917|ref|ZP_08350993.1| replicative DNA helicase [Escherichia coli M605] gi|331041174|gb|EGI13328.1| replicative DNA helicase [Escherichia coli M605] Length = 456 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + + ++++S + K + + L Sbjct: 17 AEQAVLGGLMLDNCRWDEVADRIVADDFYTSAHREIFSEMERLLSHGKPIDLITLAEALE 76 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 77 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 127 AEAGYAQDGRGSNELL 142 >gi|237723469|ref|ZP_04553950.1| DNA primase PrmN1 [Bacteroides sp. D4] gi|299146541|ref|ZP_07039609.1| DNA primase [Bacteroides sp. 3_1_23] gi|229438159|gb|EEO48236.1| DNA primase PrmN1 [Bacteroides dorei 5_1_36/D4] gi|298517032|gb|EFI40913.1| DNA primase [Bacteroides sp. 3_1_23] Length = 319 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 5/56 (8%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 Y ++ N W P +E PSF N + +Y F+ G+ ++ Sbjct: 20 YSPVKQQGINL-----WYKSPLREETEPSFKVNTERNQWYDFAIGKGGNIIALAQE 70 >gi|323969238|gb|EGB64540.1| replicative DNA helicase [Escherichia coli TA007] Length = 456 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + N ++++S + K + + L Sbjct: 17 AEQAVLGGLMLDNCRWDEVADRIVADDFYTNAHREIFSEMERLLSHGKPIDLITLAEALE 76 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 77 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 126 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 127 AEAGYAQDGRGSNELL 142 >gi|311251075|ref|XP_003124440.1| PREDICTED: homeobox protein cut-like 1-like [Sus scrofa] Length = 1158 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + + N + K + +A+++++++ Sbjct: 8 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLDEYNKEFAEVKNQEVTIKALKEKIREY 67 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + + L T + Sbjct: 68 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 125 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + +I +E++ + + L + E E + ++L L Sbjct: 126 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 185 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 186 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 245 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 246 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 291 >gi|145553100|ref|XP_001462225.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124430063|emb|CAK94852.1| unnamed protein product [Paramecium tetraurelia] Length = 739 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 59/146 (40%), Gaps = 9/146 (6%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + + +E+ +R + + L L E E++ + L ++ +L + Sbjct: 200 KLGDDPNKEVDKLRKQQKDQEDLKKKLADALKE-----IEQLKKLLNDKTAE--CNRLGQ 252 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--K 613 QV + + I ++ + QQ L R L ++ + +++Q+ + E + Sbjct: 253 QVAQLTQDNQAKDQRIQELERYAQQYQELQIRVNKLEQELDNLQRQLKDKNQQLEDKTRL 312 Query: 614 TAILISILHEVHIQIHQIESQEAMIE 639 L + ++ ++ +++ Q A +E Sbjct: 313 IDNLNREIQQLKAELQRLKDQIANLE 338 >gi|321467016|gb|EFX78008.1| hypothetical protein DAPPUDRAFT_105663 [Daphnia pulex] Length = 4511 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 34/295 (11%), Positives = 97/295 (32%), Gaps = 14/295 (4%) Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 + + + +D + +++ ES + + E ++R Sbjct: 2311 EKRRIQKESEEKDRLQKEAEEKD----RLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLL 2366 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 +E+ ++ + K+ + + + ++ Q QK E + ++ R Sbjct: 2367 KEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEK--QRIQKESEEKDRLQKEAEEKDR 2424 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 ++ QR+ + S K +L K+ ++ L+ Q +E + E Sbjct: 2425 LLKEEEEKQRIQKESEEKDRLQKETEEKDR-----LLKEKEEKQRMQKESEEKDRLQKEA 2479 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 ++ L + E++ E + ++ E + L + + + E + + Sbjct: 2480 EE-KDRLLKEEEEKRRIQKESEEKDRLQKETEEKDRLLKEEEEKQRMQKESEEKDRLQKE 2538 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + L K R ++E+E++ E ++ + ++ + Sbjct: 2539 AEEKD--RLLKEEEEKQRIQKELEEKNRLQKETEEKDRLLKEEEEKQRIQKELEE 2591 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 36/321 (11%), Positives = 102/321 (31%), Gaps = 20/321 (6%) Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 + DGD R + D R ++L E Sbjct: 2096 ISGDGDKAERRKTEGE-EKKSVQKEVNVAEQKKKEGEEND----RRLEASEEKQRLQKEV 2150 Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438 L + R +E+ ++ + +++ + + + Q ++ QK Sbjct: 2151 EEKDQFLREEVNRQRLQEEAEEKDRIQKEAEENERLLRESEEKQH-LQMEAEK--DRLQK 2207 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E + + R + + G RL + + K +L K+ ++ + L Sbjct: 2208 EAEEKDRLLKEEDEKQRIQKESGEKDRLQKETEEKDRLLKEEEEKQR--IQIESEEKDRL 2265 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 Q++ +E + + E +++ + + E RL + + +++ ++ Sbjct: 2266 QKEAEEKDRLLKEEEEKRRIQK---ESEEKDRLQKEAEEKDRLLKEEEEK--RRIQKESE 2320 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + E + + ++ + K R ++E E++ + + E ++ Sbjct: 2321 EKDRLQKEAE-EKDRLLKEEEEKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKES 2379 Query: 619 SILHEVHIQIHQ----IESQE 635 + + + ++ +E Sbjct: 2380 EEKDRLQKEAEEKDRLLKEEE 2400 Score = 37.2 bits (84), Expect = 8.8, Method: Composition-based stats. Identities = 35/269 (13%), Positives = 101/269 (37%), Gaps = 10/269 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + ++L E+ +L + E + R +E+ L+ + +K+++ Sbjct: 2401 EKQRIQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKESEEKDRLQKETEEKDRLLKEKE 2460 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + ++ QK E + ++ R + + RL + + K +L K+ Sbjct: 2461 EKQRMQKESEEK--DRLQKEAEEKDRLLKEEEEKRRIQKESEEKDRLQKETEEKDRLLKE 2518 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--I 537 ++ + LQ++ +E + + E Q++ L QK ++ + Sbjct: 2519 EEEKQR--MQKESEEKDRLQKEAEEKDRLLKEEEEKQRIQKELEEKNRLQKETEEKDRLL 2576 Query: 538 HQRLCERGFGELLKQ---LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + ++ + L++ L +++ + E + +++ ++ + + Sbjct: 2577 KEEEEKQRIQKELEEKDCLQKELEEKERLQKEAEEKDLLLKEAEEKQ-HFLTKTDEIEGT 2635 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHE 623 KE+IE + +T ++ + +L E Sbjct: 2636 KEDIEAEEKDLTKNETQKEVEVTKRLLKE 2664 >gi|159131497|gb|EDP56610.1| intracellular protein transport protein (UsoA), putative [Aspergillus fumigatus A1163] Length = 1061 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 19/159 (11%) Query: 495 PAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 P + Q+ + + +S L + I + EL+ Sbjct: 620 PQTVGGQFDAGLPDIFFDRTFIDFIKDNFSRLIRAIDREPGLEISVITNGIQRGVSRELV 679 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------RQKEE-----I 598 L ++ + E++++++R +Q +++F+ LS RQ E Sbjct: 680 DSLRAELEERSQAVQKLESDLLNLRNQLEQEQLEHRKFKDLSISEASKIRQINESLQRNH 739 Query: 599 EKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ 634 E+++A++ + K +L L + Q+ + ++ Sbjct: 740 EQELARLEEQHNYAKNELLKQHGDQLRAIDNQLKETSAE 778 >gi|229827071|ref|ZP_04453140.1| hypothetical protein GCWU000182_02455 [Abiotrophia defectiva ATCC 49176] gi|229788689|gb|EEP24803.1| hypothetical protein GCWU000182_02455 [Abiotrophia defectiva ATCC 49176] Length = 329 Score = 48.3 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 20/40 (50%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 N K ++CFS G + FL + G ++ +SV+ L Sbjct: 42 LFFNSDKNKWHCFSNSSGGGVIQFLMNVEGKTWKDSVKYL 81 >gi|304405925|ref|ZP_07387583.1| replicative DNA helicase [Paenibacillus curdlanolyticus YK9] gi|304345168|gb|EFM11004.1| replicative DNA helicase [Paenibacillus curdlanolyticus YK9] Length = 454 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 60/182 (32%), Gaps = 12/182 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L ++ + E A+L ++ L + + + ++ Q+++ + Sbjct: 2 SMNPDQLTFDRVPPQNLEAEQAILGAVLLQAEALITAMERVKSDDFYSSAHQRIYEAMVE 61 Query: 525 DFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVD--VRQ 576 + + L +R E L +L V A + +R+ Sbjct: 62 LGENNQPIDLVTLTAYLQDRQLLEEAGGITYLAKLANSVPTAANVEYYAQIVEEKSMLRR 121 Query: 577 GYQQALALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + A + E E++I +++ + + + +L EV ++ + Sbjct: 122 LIRTATQIVSNGYAAEEDVGALLGEAEQKILEISNRRSSSGFVSIRDVLMEVFERVEMLY 181 Query: 633 SQ 634 SQ Sbjct: 182 SQ 183 >gi|291277437|ref|YP_003517209.1| replicative DNA helicase [Helicobacter mustelae 12198] gi|290964631|emb|CBG40485.1| replicative DNA helicase [Helicobacter mustelae 12198] Length = 496 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/121 (12%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + E +L +++ P+ + +L + + ++ S ++ + + Sbjct: 7 YANLERTILSSILFDPSNFENILDDLQPKDFAYPAHRNIFEVCVSLHKQKNPLDEDFVRN 66 Query: 540 RLCERGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R+ +R E ++ A + + E + +++ +LA R + L+ + + Sbjct: 67 RVDKRLVSDEEFVKILATNPIANIEAYIKELKNISLKREL-HSLANTLREQSLNEELDSA 125 Query: 599 E 599 E Sbjct: 126 E 126 >gi|218263852|ref|ZP_03477821.1| hypothetical protein PRABACTJOHN_03511 [Parabacteroides johnsonii DSM 18315] gi|218222451|gb|EEC95101.1| hypothetical protein PRABACTJOHN_03511 [Parabacteroides johnsonii DSM 18315] Length = 666 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/316 (11%), Positives = 96/316 (30%), Gaps = 36/316 (11%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI---NHI 415 P + + A + + + + EN + + + Sbjct: 149 PQELSQYFLFDAMQSSELLKKNVFAQTIRDNFENVLGFKKYLQLKRAAEKLQQEWAQQRL 208 Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + +K Y++ + +L T + +K A + ++ Q + K Sbjct: 209 EAEKEAQEYNELCAQK-DKLTADLNTCIAEQDTKYKYLASVEVEYKRAKDGAQEASALNK 267 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ + + ++ + L+ + + L + + ++ E Sbjct: 268 KIQELASKIDDIVKRAATYAEDLKAFVDNIEIDLFLPKLASNLAQEINNILHIKEQLQKE 327 Query: 536 EI----HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVD----VRQGY 578 + L + + + +D + + + + N D + + Sbjct: 328 NTGAYPLETLKDVTNKIITYLKDLSLCSESVDEEQVVSHIVAIQNSTNKEDPFGYLDEAE 387 Query: 579 QQALALYKRFR------LLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHE 623 AL+ + L RQ++E+E Q++ + ++T LI Sbjct: 388 VTALSNLVKRTGSNQFIALDRQRQELEIQLSTLDNLRSQKQTLEQTQAGGNEYLIQNYEA 447 Query: 624 VHIQIHQIESQEAMIE 639 QI +++ QEA ++ Sbjct: 448 AQKQIEKLKGQEAALK 463 >gi|85057287|ref|YP_456203.1| replicative DNA helicase [Aster yellows witches'-broom phytoplasma AYWB] gi|84789392|gb|ABC65124.1| replicative DNA helicase [Aster yellows witches'-broom phytoplasma AYWB] Length = 447 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 11/150 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K + E ALL L+ +P + + + + + Q ++ + + K Sbjct: 5 SKNTPSSPEAERALLGVLLLNPEKITFTLDMIEETDFYSPHHQHIFRAMKTLHETNKQID 64 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L + + +D + L + Y + + L R Sbjct: 65 YSSVSAILDNEKLLKKIGNIDYLKELSDLMPSIQHIG------TYIDLI----KETALKR 114 Query: 594 QKEEIEKQIAQVTAKG-EAEKTAILISILH 622 + E +AQ + + ++ L Sbjct: 115 EIIETVTSLAQKGYENIDVQEYLDLSEEKI 144 >gi|212704073|ref|ZP_03312201.1| hypothetical protein DESPIG_02128 [Desulfovibrio piger ATCC 29098] gi|212672433|gb|EEB32916.1| hypothetical protein DESPIG_02128 [Desulfovibrio piger ATCC 29098] Length = 398 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK---GFYYCFSCHVKGDHLSFLSALLGCS 84 R+ + CP + F + G Y C C +GD + FL S Sbjct: 15 KRKG----PHELAGPCPACGGRD-RFLVWPDRPRGGAYLCRQCGARGDGIQFLRDFCRLS 69 Query: 85 FIESVQRL 92 + ++ + L Sbjct: 70 YADACRTL 77 >gi|238782923|ref|ZP_04626951.1| Replicative DNA helicase [Yersinia bercovieri ATCC 43970] gi|238794661|ref|ZP_04638267.1| Replicative DNA helicase [Yersinia intermedia ATCC 29909] gi|238716126|gb|EEQ08110.1| Replicative DNA helicase [Yersinia bercovieri ATCC 43970] gi|238726050|gb|EEQ17598.1| Replicative DNA helicase [Yersinia intermedia ATCC 29909] Length = 468 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|303232314|ref|ZP_07319009.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4] gi|302481571|gb|EFL44636.1| replicative DNA helicase [Atopobium vaginae PB189-T1-4] Length = 477 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P ++ K + E +LL +I ILQ L + + + ++ Sbjct: 21 PPVNPDGTTQGKALQLPQDVEAEKSLLAAMILSDDILQNCITALKEDDFYLTRHKIIFRA 80 Query: 522 LFSDFVEQKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 + + + + P + L G L +L W E D Sbjct: 81 ILALADKGQTVDPVSLADWLKTTNELDRIGGSATLVELSENSFSLVSWEHHIEILHRDA- 139 Query: 576 QGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + + + L + E + +VT K A + L ++ ++ Sbjct: 140 -CLRSLILASFNIQKLAFDAPEDTKEVIDSAENMLLEVTNKEVASNYSPLSEVMSSLYTD 198 Query: 628 IHQIESQ 634 + ++++ Sbjct: 199 LTEMQAS 205 >gi|32491248|ref|NP_871502.1| hypothetical protein WGLp499 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166455|dbj|BAC24645.1| dnaB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 465 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 3/141 (2%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + K + + +L K K+ E ++L L+ + + + N Q Sbjct: 3 KYTKNNIYKSSKFNLSKFKIPPHSLEAEQSILGGLMLNNNHWDNISDRIDFNDFFNRSHQ 62 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 ++ ++ F K + + L ++G LK + A + + Sbjct: 63 LIFKEMYKLFEIGKPIDLITVSESLEQKG---QLKLIGGFAYLAEISKNVPSTTNIFAYS 119 Query: 577 GYQQALALYKRFRLLSRQKEE 597 + +L ++ +S++ + Sbjct: 120 EIVRERSLIRKIIEVSQEISD 140 >gi|295402338|ref|ZP_06812293.1| DnaB domain protein helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975611|gb|EFG51234.1| DnaB domain protein helicase domain protein [Geobacillus thermoglucosidasius C56-YS93] Length = 430 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 50/146 (34%), Gaps = 13/146 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ P++++E L + + +++ + + + + Sbjct: 9 AERLVLACILKDPSLIEETM--LRPGHFIDPRNHEIFRLMLEAKERNEKPDVVTLLMMVG 66 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 F +L + L + + ++ D Q + + R R + + E Sbjct: 67 GDAF-----RLGGNDYLSDLMNTVVDVSLFDKYQRWVKDFNTIDRARTIVGKFME----- 116 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 + +K + ++ L ++ +I Sbjct: 117 -ETKSKADIHGLQKMMDELTKLETEI 141 >gi|221483859|gb|EEE22163.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 3093 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 92/272 (33%), Gaps = 17/272 (6%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427 + RE + ++ E+ + N K + R ++Q Sbjct: 1907 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1966 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +L + +++A + + + + + + E A Sbjct: 1967 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2023 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L + + QE + L + E E + + L E Sbjct: 2024 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEETC-A 2079 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 LL++++ + + + + + + +Q L + + R+ EE+E+++A Sbjct: 2080 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRVA---- 2135 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E+ A ++L ++ Q Q+++Q++++E Sbjct: 2136 ----EQRAREAALLRQIENQEDQLQNQQSLLE 2163 >gi|222475326|ref|YP_002563743.1| replicative DNA helicase (dnaB) [Anaplasma marginale str. Florida] gi|222419464|gb|ACM49487.1| replicative DNA helicase (dnaB) [Anaplasma marginale str. Florida] Length = 492 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 21/192 (10%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S+L E L+ ++ I ++ + + +++ + Sbjct: 12 ESSTLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKIN 71 Query: 527 VEQKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + L E G E L ++ + + +A ++ Sbjct: 72 RRGLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRR 128 Query: 581 ALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQI 628 L Y +Q E+ +++ + ++G++++ S+L E V +I Sbjct: 129 CLIAFGNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKI 188 Query: 629 HQIESQEAMIEG 640 + ++G Sbjct: 189 EAAKGGANALQG 200 >gi|170593755|ref|XP_001901629.1| Myosin tail family protein [Brugia malayi] gi|158590573|gb|EDP29188.1| Myosin tail family protein [Brugia malayi] Length = 1985 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 90/275 (32%), Gaps = 24/275 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + E E R + +A++E L+ + + + + R + + +Q + Sbjct: 921 EKSHSAEAEGRIQKLNEIKADMERQLEELNDRVAEMEDRNETLNRAKKKSEQEVSDLKRK 980 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 + +K + + + RL+Q + + +E + ++ Sbjct: 981 NQELEMALRKAESEKQSREQNIRLLQGEMASQDEAVARVNKEKK------QQEEMNRKLM 1034 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--------ERGFGELLKQLD 554 ++L N +++L + + + + L E RL E + +D Sbjct: 1035 EDLQVEEDKVNHMERLKTKIEQQLDDMEEKLEREKRMRLDLEKAKRKVEGELKVAQENMD 1094 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + D+ + L +Q +++E +IA++ E E+ Sbjct: 1095 EITKQKHDIEQILRRKDADLIATVGKLDGEQSAVNKLQKQIKDLEGRIAELEEDLEQERQ 1154 Query: 615 AI---------LISILHEVHIQI-HQIESQEAMIE 639 + L L E+ ++ Q + A IE Sbjct: 1155 SRGKLDRAKGDLQRELDEITQRLDEQGGATAAQIE 1189 >gi|154502511|ref|ZP_02039571.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149] gi|153796907|gb|EDN79327.1| hypothetical protein RUMGNA_00324 [Ruminococcus gnavus ATCC 29149] Length = 592 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 42/449 (9%), Positives = 109/449 (24%), Gaps = 33/449 (7%) Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL- 117 K +Y FS + G + F+ G SF E+V+ L G + + + K++ + + Sbjct: 4 KNEWYRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQKVC 61 Query: 118 ------------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 E+A + ++L + +G + + + Sbjct: 62 PIPLPGLELPERNESCEIARKYLIEQ--RKLSEQLVDQMIAKGDIYESKNYHNVVFVGRD 119 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + + +G E + + +F + Sbjct: 120 KEQNPRYAAMRGTDEHRYRGEAKGSEKAYGFGHIGTDEKLFVFESPID----FLSYITAV 175 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS--SSFIILVEGYMDV 283 + S + K +Y + + + D N F+ ++ V Sbjct: 176 PEEWEKHSYISLGGLSEKAMKQVYMEHKNIRSIYLCLDNDEPGNERCRQFVSMIPEEFCV 235 Query: 284 LSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLI 343 L A + + + + R L + Sbjct: 236 FRLEPAKKDWNECLVAGLHVKEMAKQICLRDNRENLIPVTKMSEVEETVVQWLWYPFIPF 295 Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + +G+ + A L + L E + Sbjct: 296 GKVTLIQGNPGKGK-------TWLAMAIAAYCTNGKELPNALP---IEPFNVLYQTAEDG 345 Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + +K + R + +L + + G + Sbjct: 346 IADTIKPRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGAN 405 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + +++ ++ ++ E ++ Sbjct: 406 VDMNRANEIRPLFRHLSTIAERTGCAIVL 434 >gi|83769660|dbj|BAE59795.1| unnamed protein product [Aspergillus oryzae] Length = 1320 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 77/233 (33%), Gaps = 15/233 (6%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R S A+ L++L K ++ + + + +S + K + +P Sbjct: 263 RQAQSTALSRELEELKTKLRV-MEKKRTEDREKLKALETLQQERDKFESIIQKLQAKYQP 321 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + L + E+ + + E+ L + + + E + R Sbjct: 322 QQLEISDLRKKLRESEAQLEEIERIQAEHDSILEMATLDREMAEETADAFRHEVETLKLR 381 Query: 541 LCE--------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLL 591 + E R E L Q + E +R+ + + ++ L Sbjct: 382 VEELQLEAEVLREENEELGQTMSPEEKSSHGWLQMERTNERLREALIRLRDMTQQQESEL 441 Query: 592 SRQKEEIEKQIAQVTA-----KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q +E+++ + + + + EK + + + ++ Q+ E MIE Sbjct: 442 KDQIKELQQDLEEYESIKSQYESTKEKLLVAENNVEDLKQQLETALGAEEMIE 494 >gi|295980953|emb|CBJ57201.1| hypothetical protein [Streptococcus pneumoniae] Length = 178 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF E++ L+ + ++ + + Sbjct: 47 FKWFSRDIQGDVIDFVQLVKGISFKEALAFLSK------EPFQKEAVQENRERPFYY 97 >gi|238764112|ref|ZP_04625066.1| Replicative DNA helicase [Yersinia kristensenii ATCC 33638] gi|238697649|gb|EEP90412.1| Replicative DNA helicase [Yersinia kristensenii ATCC 33638] Length = 468 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|195401098|ref|XP_002059151.1| GJ16188 [Drosophila virilis] gi|194156025|gb|EDW71209.1| GJ16188 [Drosophila virilis] Length = 1916 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 85/286 (29%), Gaps = 27/286 (9%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 +K + + + +A + K + + + Sbjct: 1377 AQKELSTQQDVGSAKILKLERELEETRQQLQATQASQVSESAAREKLKAEAGESESKLLE 1436 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++QL + + + +N + + + + L + + ++ A L T Sbjct: 1437 HVKQLQDQLARAQAEQQQKSSENEQAIKELLERLDITNAELQHKEQLAREDAQKIADLKT 1496 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWS----------FLFSDFVEQKYFLPEEIHQR 540 L+ + N EL + +F F + E + ++ Sbjct: 1497 LVEAIQVANANISA------TNAELSTVLEVLQAEKSETAHIFELFEMEADMNAERLIEK 1550 Query: 541 LC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L ++ E QLD Q+ + A+ ++ R L + K E+ Sbjct: 1551 LQGMKQELQETHSQLDSQLSSNKALEQKLQELQQSEESLQGTAVEAAEQLRQLQQAKAEL 1610 Query: 599 EKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQIESQE 635 + + Q AK + + S + E+ Q+ +++ E Sbjct: 1611 QDALQQSQAKLAETQQQLQANQSQFELQQSSIQELQQQLQRVKQSE 1656 Score = 41.4 bits (95), Expect = 0.45, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 + L + + + + E + R E LKQL+ ++ A+ E+ Sbjct: 1085 QHAALLAKCETQQQQAQTVQAELLAARAGAAQLQETLKQLNDELLAKQQSYASLESASSG 1144 Query: 574 VRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI---- 628 R L ++ L R+ +++++ + ++ A+ E ++T + + + Sbjct: 1145 QRLELASDNELLQQTNARLERELKDLQQSLDKLRAEAEQKQTQLGELEQLAIERDLALGD 1204 Query: 629 --HQIESQEA 636 Q E EA Sbjct: 1205 AGRQREQLEA 1214 >gi|307171899|gb|EFN63541.1| Transcription initiation factor TFIID subunit 4 [Camponotus floridanus] Length = 953 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 Q++ S +E+ + + L+++L V Sbjct: 747 TPLQQRIKQIASSHNLEEPNQEVAALISHAVQERLKNLVEKLA--VIAEHRIDLIKVDPR 804 Query: 572 VDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 +V Q + L + + R+K E+ + A+ AK E + A L + E+ Sbjct: 805 YEVTQDVRAQLKFLEDLDKVERRKHEEQERELLLRAAKSRAKTEDPEQAKLKAKAKEMQR 864 Query: 627 -QIHQIESQEA 636 ++ ++ +EA Sbjct: 865 AEMEELRQREA 875 >gi|304391336|ref|ZP_07373280.1| DNA primase [Ahrensia sp. R2A130] gi|303296692|gb|EFL91048.1| DNA primase [Ahrensia sp. R2A130] Length = 62 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 ++ R R L+ + +E+ A+ + + L + ++ EA+IEGFG Sbjct: 1 MHNRARSLAAGLKAVERTFAENWDE-------ESLQRLMALKQELASETGTEALIEGFGL 53 Query: 644 MSGR 647 SGR Sbjct: 54 SSGR 57 >gi|297572318|ref|YP_003698092.1| replicative DNA helicase [Arcanobacterium haemolyticum DSM 20595] gi|296932665|gb|ADH93473.1| replicative DNA helicase [Arcanobacterium haemolyticum DSM 20595] Length = 451 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 7/151 (4%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S+ + E ++L ++ L + + L + +++ + S F Sbjct: 5 SNSQFERTPPHDIDAERSVLGGMMLSKDALADVSEMLDAQDFYRPAHATIFTVVISLFGA 64 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + + L +G L+Q+ + L S+ A A+ +R Sbjct: 65 GQPADAITVAAELQRQGK---LEQVGGRAVLHDLVSSVPTAANASYYATIVHEQAMLRRL 121 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + Q+ T G+ + L Sbjct: 122 VETGTRIA----QLGYTTDGGDVAELLNLAQ 148 >gi|152984717|ref|YP_001345758.1| virulence-associated protein E [Pseudomonas aeruginosa PA7] gi|150959875|gb|ABR81900.1| virulence-associated protein E [Pseudomonas aeruginosa PA7] Length = 127 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%) Query: 15 IPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND-SKGFY--YCF-SCHV 69 PI ++G+ R K N K + ACCP HD+K+PS + G C+ C Sbjct: 2 TPIDKVLGRLDKVKRVKVN-GKHRWKACCPAHDDKSPSLDVTEAEDGTVLLKCWVGCSA 59 >gi|304390458|ref|ZP_07372411.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657666|ref|ZP_07910548.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304326214|gb|EFL93459.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492138|gb|EFU81747.1| replicative DNA helicase DnaB [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 458 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 13/177 (7%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + ++ L E +L +I + + Y+ L + ++ + +++ + + Sbjct: 5 DAPPLDRIPPHNILAEQCVLGAMILSKNAIADTYKLLLPSDFYDSRHEIIFNTILDLYAA 64 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALAL 584 P + L +RG + LD A IV + + + Sbjct: 65 GAASDPVTVPAELEKRGQLSRIGGLDYIHTVVHSVPTAANAAYYAQIVRDQATLRGLVEA 124 Query: 585 YKRFRLL---------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 R L ++ +V+ K +E +L +L V +I Q + Sbjct: 125 GTRITQLGYAIDTTDADELINTAHAELDRVSEKRTSEDYRLLSELLTPVLDEIQQTD 181 >gi|296271502|ref|YP_003654134.1| replicative DNA helicase [Thermobispora bispora DSM 43833] gi|296094289|gb|ADG90241.1| replicative DNA helicase [Thermobispora bispora DSM 43833] Length = 454 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 8/80 (10%), Positives = 26/80 (32%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S+ + + E ++L ++ + + + L + Q ++ + Sbjct: 10 PGGSNSIFERTPPHNIEAEQSVLGGMLLSKDAIADVIEVLRSEDFYRPAHQIIYDVIIDL 69 Query: 526 FVEQKYFLPEEIHQRLCERG 545 + + + L +RG Sbjct: 70 YGRGEPADSVTVFDELQKRG 89 >gi|322487917|emb|CBZ23161.1| hypothetical protein LMXM_03_0270 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 1372 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Q + +L Q+ + AR + +++ + ++ + Sbjct: 424 RDEARQELAANADELQQRVHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHA 483 Query: 481 SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + ++ A L + A E QELA ++ Q+L + + + Sbjct: 484 ATQQRAELEAQVARLAADRDEARQELAAN--ADDLQQRLHAATQQRAELEAQVARLAADR 541 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALA-----LYKRFRLL 591 + +L +++ A A EA + + R +Q LA L +R Sbjct: 542 DEARQELAANADELQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAA 601 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++Q+ E+E Q+A++ A + + L + E+ ++H Q A +E Sbjct: 602 TQQRAELEAQVARLAADRDEAR-QELAANADELQQRLHAATQQRAELE 648 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 75/221 (33%), Gaps = 13/221 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++ RL Q+ + R R + + +Q L + E Sbjct: 357 ADDLQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAATQQRAE--LE 414 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQKYFLPEEIH 538 A + + QE +++ + + + L + ++ Sbjct: 415 AQVARLAADRDEARQELAANADELQQRVHAATQQRAELEAQVARLAADRDEARQELAANA 474 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L +R ++ + + + A L + EA A L +R ++Q+ E+ Sbjct: 475 DDLQQRLHAATQQRAELEAQVARLAADRDEARQELA----ANADDLQQRLHAATQQRAEL 530 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E Q+A++ A + + L + E+ ++H Q A +E Sbjct: 531 EAQVARLAADRDEAR-QELAANADELQQRLHAATQQRAELE 570 Score = 42.6 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 17/227 (7%) Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS--SLVKGKLSKKP 480 + QA+ LQ + + + ++ + + L +++ Sbjct: 156 HALQAVIQALQHALNAEQATAATAAQSAATELQTSKEENATLKTTLHHLKLNMDAATQQR 215 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + EA + + QE D++ Q+L + + + Sbjct: 216 AELEAQVARLAADRDEARQELAANADDLQ------QRLHAATQQRAELEAQVARLAADRD 269 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALA-----LYKRFRLLS 592 + +L +++ A A EA + + R +Q LA L +R + Sbjct: 270 EARQELAANADELQQRLHAATQQRAELEAQVARLAADRDEARQELAANADDLQQRLHAAT 329 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +Q+ E+E Q+A++ A + + L + ++ ++H Q A +E Sbjct: 330 QQRAELEAQVARLAADRDEAR-QELAANADDLQQRLHAATQQRAELE 375 Score = 42.2 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + ++ L +R ++ + + + A L + EA A Sbjct: 303 LAADRDEARQELAANADDLQQRLHAATQQRAELEAQVARLAADRDEARQELA----ANAD 358 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 L +R ++Q+ E+E Q+A++ A + + L + ++ ++H Q A +E Sbjct: 359 DLQQRLHAATQQRAELEAQVARLAADRDEAR-QELAANADDLQQRLHAATQQRAELE 414 Score = 37.2 bits (84), Expect = 9.7, Method: Composition-based stats. Identities = 24/210 (11%), Positives = 70/210 (33%), Gaps = 9/210 (4%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Q + L Q+ + AR + +++ + ++ + + Sbjct: 580 RDEARQELAANADDLQQRLHAATQQRAELEAQVARLAADRDEARQELAANADELQQRLHA 639 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIH 538 + ++ A L + ++ + + D ELQ + + E ++ E Sbjct: 640 ATQQRAELEA--QVARLAADRDEAVEQKTMDAEELQLFREIVAQERDEAEHWRLDQEAEV 697 Query: 539 QRL--CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 +RL ++L + R V A A + + + ++ ++ Sbjct: 698 ERLAAEGEAMRKMLVKEARVVEHGTSALAQRGAELEAQVAVLLRERDEARAQAAVAAEQL 757 Query: 597 EIEKQI-AQVTAKGEAEK--TAILISILHE 623 +++++I + + ++ ++ L E Sbjct: 758 QLQREIMKKAQESFDKDRACLESRMAQLME 787 >gi|262204257|ref|YP_003275465.1| ATP-dependent chaperone ClpB [Gordonia bronchialis DSM 43247] gi|262087604|gb|ACY23572.1| ATP-dependent chaperone ClpB [Gordonia bronchialis DSM 43247] Length = 876 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 23/218 (10%), Positives = 72/218 (33%), Gaps = 16/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + R ++ + +++ + ++ +++ AL+ + ++H Sbjct: 326 YRKHIESDAALERRFQTVLVDEPSIEDAISILRGLRERLEVFHGVKIQDGALVAAVTLSH 385 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + E + Sbjct: 386 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDELTRKVTRLEIEEAALSKETD--- 441 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 L E + + A ++ R R+ +E+ ++ ++ + E + Sbjct: 442 -AASKTRLEELRRELADLRAEADARHAQ--WEAERQAIRRVQELRGELERLRHEAEEAER 498 Query: 615 AILIS--------ILHEVHIQIHQIESQEAMIEGFGKM 644 ++ + + ++ E Q A +G + Sbjct: 499 NYDLNRAAELRYGEITALERRLEAAEEQLATRQGRNPL 536 >gi|71733128|gb|AAZ40189.1| nonmuscle myosin II [Aplysia californica] Length = 1902 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 76/261 (29%), Gaps = 18/261 (6%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + +L K + + + Y + + ++QL Q+ R Sbjct: 1332 KRQYEKQMQEISQKLIEVKKKADEDMANNEALEEYKKKVAREMEQLQQQLEESRIQSDRL 1391 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 K R + + + ++ L ++ + E Sbjct: 1392 EK---SKRKLQAEVDDMTVELESQRSNVSNMDKKQRKFDQMLAEEKSVSERLGLERDTAE 1448 Query: 510 YDNNE-------LQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 ++ E LQ+L L +Q+ E++ + G+ + L++ Sbjct: 1449 KESREKETKILNLQRLLDELQERADQLDRAKQQQARELEDLIS--SKDDVGKNVHDLEKS 1506 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 R A I D+ Q A R + + ++ A E E Sbjct: 1507 KRSLDATVAEQRQQIEDLEDELQAAEDAKLRLEVNMQALRAQFERDAAGREDQEEEARKS 1566 Query: 617 LISILHEVHIQIHQIESQEAM 637 L+ L E+ ++ Q+A+ Sbjct: 1567 LLKQLREMEAELEDERKQKAI 1587 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 39/318 (12%), Positives = 104/318 (32%), Gaps = 14/318 (4%) Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382 D+ +A L + G + ++ +D ++ Y + A + + Sbjct: 1579 EDERKQKAIAVNARNKLQGDLSGLEQQVEMANKVKD--DAVKQYKRLAAQLKDFQRELDD 1636 Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + + E + + LE L + + +++ RD + + Sbjct: 1637 SRISREEMAGAMKDNEKKVKNLEAELLRLQEELASAERAKRNAESERDEMADEIGSSSSS 1696 Query: 443 HSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 ++ AR + + + ++ + ++K L+ + L + ++ Q+ Sbjct: 1697 KQALLDEKRRLEARISELEDELEDEHTNTELMNDKARKAQLQAEQMAAELASERSVSQKL 1756 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--------CERGFGELLKQL 553 + + N E+++ S L + + ++ E L + Sbjct: 1757 ENQRLALERQNKEMKEKLSELEGQSRARTKATIAALEGKIANLEEQLDQEAKERSSLARA 1816 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 +R++ A + Y+ L R + L RQ +E E+++ + G+ Sbjct: 1817 NRKMEKRSKELALQVEDERRSADQYKDQLDKSNNRVKALKRQLDEAEEEVTRAN--GQKR 1874 Query: 613 KTAILISILHEVHIQIHQ 630 K + EV+ + + Sbjct: 1875 KLQRDLDEQMEVNEXMTR 1892 >gi|332362024|gb|EGJ39826.1| putative zinc finger protein [Streptococcus sanguinis SK49] Length = 361 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 40/111 (36%), Gaps = 16/111 (14%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I++ I I ++ + Y P HD SF + + FS Sbjct: 3 IEECKQ-ISILDVANR---LGISCKQVSSRVYEH--PEHD----SFRIFSTTNTFKWFSR 52 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 53 DIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97 >gi|256086967|ref|XP_002579653.1| myosin heavy chain [Schistosoma mansoni] gi|238665121|emb|CAZ35892.1| myosin heavy chain, putative [Schistosoma mansoni] Length = 1937 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 888 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 947 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 948 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 1001 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 1002 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 1061 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 1062 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1118 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1119 ELEEVVDRLEEQDGATAA 1136 Score = 39.5 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + E + + + ++ L KN + I D Sbjct: 1431 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1490 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477 + + + ++ E ++ +Q+ + Q S ++ ++ Sbjct: 1491 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1550 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ + +E T NH ++ Q L E ++ L D E + L Sbjct: 1551 RRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKKKLEQDINELEVSLDGAN 1610 Query: 538 HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587 R + EL QL+ R +A G L + Sbjct: 1611 RARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1670 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 SR+ E E+ A A + +TA L + ++ + +++ +EA E Sbjct: 1671 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1724 Score = 39.5 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E A Sbjct: 1082 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1140 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 1141 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1200 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ ++T + + Sbjct: 1201 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1260 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612 V + +Q + L++ K+++ Q+ + E E Sbjct: 1261 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1320 Query: 613 --KTAILISILHEVHIQIHQIESQ 634 S ++ Q+ +++ + Sbjct: 1321 RETLEEEQSAKGDLQRQLQKLQGE 1344 Score = 37.6 bits (85), Expect = 7.2, Method: Composition-based stats. Identities = 26/279 (9%), Positives = 71/279 (25%), Gaps = 16/279 (5%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 + + + +D + E + + +E + K + + Sbjct: 1534 KVQRAQLEMSQIRQEIDRRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKK 1593 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREA 485 + + +L + K + + Q +L + L ++ E Sbjct: 1594 KLEQDINELEVSLDGANRARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAER 1653 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCER 544 + L E L + + E +R E Sbjct: 1654 RATVLA----GELDELRIALDQAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEA 1709 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEE 597 + L+ +A + + ++RQ + + K + L Q +E Sbjct: 1710 DLAAMQADLEEAANEAKQADERAKKAMADSARVFEEIRQEQEHTQHVEKARKQLEIQVKE 1769 Query: 598 IEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633 + ++ + L + E+ ++ + Sbjct: 1770 LMARLEDSESGAMKNGRKAMGKLEQRVRELETELEAEQR 1808 >gi|225856818|ref|YP_002738329.1| DNA primase [Streptococcus pneumoniae P1031] gi|225725777|gb|ACO21629.1| DNA primase [Streptococcus pneumoniae P1031] Length = 361 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 28/117 (23%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSRVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 + FS ++GD + F+ + G SF +++ L+ + ++++ + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKDALAFLSE------EPFQKEAVQEKRERPFYY 97 >gi|167467150|ref|ZP_02331854.1| replicative DNA helicase [Yersinia pestis FV-1] Length = 412 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|302556316|ref|ZP_07308658.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM 40736] gi|302473934|gb|EFL37027.1| ATP-dependent chaperone ClpB [Streptomyces viridochromogenes DSM 40736] Length = 879 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 71/214 (33%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R +++ + +++ + ++ +++ AL+ ++H Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEIFHGVKIQDTALVSAATLSH 383 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + E + Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKETD--- 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607 L E + + A ++ R R+ +E+ +++ + Sbjct: 440 -PASKTRLEELRKELADLRSEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640 + + A L L ++ ++ E Q A +G Sbjct: 497 AYDLNRAAELRYGRLQDLERRLAAEEEQLAAKQG 530 >gi|323651100|ref|YP_004243527.1| hypothetical protein pls20_p040 [Bacillus subtilis subsp. natto] gi|323461523|dbj|BAJ76940.1| conserved hypothetical protein [Bacillus subtilis subsp. natto] Length = 459 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 S + K + FS G+ + F+ G SF ++V L K K++ Sbjct: 43 SLMIDKEKNSFQWFSQGKNGNSIDFVRTFYGKSFRDAVSMLTEK-----DYKHTKEVKEQ 97 Query: 112 KIQTDLIRL 120 + + + Sbjct: 98 PQKEFVYDI 106 >gi|237843561|ref|XP_002371078.1| plectin, putative [Toxoplasma gondii ME49] gi|211968742|gb|EEB03938.1| plectin, putative [Toxoplasma gondii ME49] Length = 3686 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 35/280 (12%), Positives = 83/280 (29%), Gaps = 23/280 (8%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQKL 420 + A E + +L + + A + ++ ++ Sbjct: 3200 AQAQQFAASEATLQAALSEAEKKSLACEARMREELQNHVAAASRIKAEEESRMQFVLEQE 3259 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + ++L++ F++ E S + + + ++ KG+ ++ Sbjct: 3260 KKKVAAEEAEKLRKTFERLWDEESAKMLQAYEAVARQLAEAQ-----RAMHAKGEELEEV 3314 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 REA ++ E + + + EL +L S E + Sbjct: 3315 KKREAEARRAALDATQEASEVQELREKLAARDAELSELRSANKEQTEELATVRANQ---- 3370 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIE 599 +L + + R+ + Q R R +RQ EE E Sbjct: 3371 ----------TRLAEEAARQREALEKQRDTLEKEREVLRGQVEDAKDRERERARQTEEQE 3420 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + A+ E E + L + ++ + + A E Sbjct: 3421 SCLRRALAEREDEARQKTL-RLQVLEEELETEKHRNASAE 3459 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 38/355 (10%), Positives = 109/355 (30%), Gaps = 30/355 (8%) Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 ++ E +++ L ++ D K ++L L Sbjct: 2791 HAFATFRQDAARREEEREQEIQQLRDAMKKVEE--DQRGSLQPEKAKQLELELDAARAET 2848 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 D +R ++ + +R + ER +E Sbjct: 2849 DSLRREALELRDAAECLRMQ-LETARADQQQAAAAFEDRLRRAVDEEKEAYFAERRRVEA 2907 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++ + R +A ++L + + + + + + + L Sbjct: 2908 THAEALTSLRAELSREQADRAAHEKLAEELKACKCALARE-----RGEKEEAARAWQEEL 2962 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FS 524 ++ + + ++ ++A + +L EL +L++L S S Sbjct: 2963 TLATRRQEEQEEEMKNKQAEI--------DVLNAMQDEL------QEQLEELRSRCSQLS 3008 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E+ ++ + +L + ++ + R A + E + +Q L Sbjct: 3009 AKEEEAPRGRDDEMAYMQ----RQLAETVEEKGRLASELATVREVYAQQSEEQKKQLEDL 3064 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAM 637 + R+ ++++++ VT E ++ L + ++ + ++ EA Sbjct: 3065 ALSLQASEREVADLQRRLEAVTLDVERQQQEAKAEHLRALEVKQSECMRKAGEAA 3119 >gi|184200066|ref|YP_001854273.1| chaperone ClpB [Kocuria rhizophila DC2201] gi|183580296|dbj|BAG28767.1| chaperone ClpB [Kocuria rhizophila DC2201] Length = 887 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 24/204 (11%), Positives = 66/204 (32%), Gaps = 6/204 (2%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++ I + + R +++ + +++ + + K + ++AL+ Sbjct: 319 YRENIEKDAALERRFQQVYVGEPSVEDTVAILRGLKERYEAHHKVQIADSALVAAAQLSA 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG---ELLKQ 552 + + I + +L + S E RL E Sbjct: 379 RYIPSRQLPDKAIDLIDEAASRLRMEIDSAPEEIDELRRA--VDRLTMEELALEGETDPA 436 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA- 611 ++ A EA + + ++ A + L + +++ Q + G+ Sbjct: 437 SVERLAALRQDKADKEAELDALNARWEAEKAGLNQVGELKARIDDLRSQAERAQRNGDLG 496 Query: 612 EKTAILISILHEVHIQIHQIESQE 635 E + +L + Q+ ++QE Sbjct: 497 EASRLLYGEIPNAQKQLDAAQAQE 520 >gi|85713927|ref|ZP_01044916.1| hypothetical protein NB311A_07223 [Nitrobacter sp. Nb-311A] gi|85699053|gb|EAQ36921.1| hypothetical protein NB311A_07223 [Nitrobacter sp. Nb-311A] Length = 921 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTP-SFHCNDSKGFYYCFSCH-VK 70 + +++L+ ++ RR ++ + P P SF N S G + F+ Sbjct: 23 ARVALTSLVQDWLPDGRR----EGSEWISRNPTRGNTRPGSFKINLSTGVWSDFATGEAG 78 Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGVP 99 GD + L+ L S +++ + +A GV Sbjct: 79 GDAIDLLAYLNRTSKLDAAREIAQRLGVT 107 >gi|327287208|ref|XP_003228321.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein cut-like 1-like [Anolis carolinensis] Length = 1662 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 103/286 (36%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 239 DPSPALDLGQQLQLKVQRMHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 298 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q + +K + ++ +R++Q + + + + + L T + Sbjct: 299 EQTLKNQAENLA--LEKEQKLQNDFAERERMLQETQISTASKLEEAEHKMQALQTALEKT 356 Query: 496 --AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + ++E++ + + L + E E + ++L L Sbjct: 357 QAELFDLKTKYDEETTAKSDEIEMIMTDLERANQRAEVAQREAEALREQLSSANKSLQLA 416 Query: 552 -------QLDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598 +++ + S E ++ Q + L L Q ++ Sbjct: 417 TQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQGNLSKLRENSTSQISQL 476 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q+ + + E+ + + EV +++ ++S E A+ + G Sbjct: 477 EQQLTAKNSTLKQLEEKLKVQADYDEVKKELNILKSMEFALSDSSG 522 >gi|323344344|ref|ZP_08084569.1| hypothetical protein HMPREF0663_11105 [Prevotella oralis ATCC 33269] gi|323094471|gb|EFZ37047.1| hypothetical protein HMPREF0663_11105 [Prevotella oralis ATCC 33269] Length = 313 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Query: 8 IKDLLIHIPISNLIGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 ++ + IPI++ Y+ + K Y A P+ ++ S + + ++ Sbjct: 8 LQHIKA-IPIAD----YLHACGIEPAKRYNGYALYHA--PYREDPNASLKVDFRQNLWHD 60 Query: 65 FSCHVKGDHLSFLSALLGCSFIESVQRLAA 94 + + G + + + G S E++ LA Sbjct: 61 YGTNQGGSIIDLVMQMQGSSAYEAMAHLAE 90 >gi|197103210|ref|YP_002128588.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] gi|196480486|gb|ACG80013.1| ATP-dependent protease LA [Phenylobacterium zucineum HLK1] Length = 792 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 54/159 (33%), Gaps = 7/159 (4%) Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQK----LWSFLFSDFVEQKYFLPEEIHQR 540 + L +P + + + + + D E++ L S P E+ Sbjct: 104 FEITEWLEGYP-FIAARGRRITESEADGPEIEARFLHLRSQALEALQLLPQSPPAELVSA 162 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L L D VD++ + + + R EI + Sbjct: 163 VEGASSAATLADLVAAYLDLQPPEKQEILETVDLQARLDRVSTFLAKRLEVLRLTSEIAQ 222 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + GE ++ A+L + + ++ + + +E ++E Sbjct: 223 RTRE--SLGERQRQALLREQMAAIQRELGETDDREELVE 259 >gi|291524638|emb|CBK90225.1| DNA primase (bacterial type) [Eubacterium rectale DSM 17629] Length = 623 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQPQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|255003309|ref|ZP_05278273.1| replicative DNA helicase [Anaplasma marginale str. Puerto Rico] Length = 486 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/192 (11%), Positives = 60/192 (31%), Gaps = 21/192 (10%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 S+L E L+ ++ I ++ + + +++ + Sbjct: 6 ESSTLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKIN 65 Query: 527 VEQKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + L E G E L ++ + + +A ++ Sbjct: 66 RRGLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRR 122 Query: 581 ALAL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQI 628 L Y +Q E+ +++ + ++G++++ S+L E V +I Sbjct: 123 CLIAFGNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKI 182 Query: 629 HQIESQEAMIEG 640 + ++G Sbjct: 183 EAAKGGANALQG 194 >gi|253575675|ref|ZP_04853011.1| ATP-dependent protease La [Paenibacillus sp. oral taxon 786 str. D14] gi|251845013|gb|EES73025.1| ATP-dependent protease La [Paenibacillus sp. oral taxon 786 str. D14] Length = 778 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 56/167 (33%), Gaps = 5/167 (2%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 L G + E A ++ +++ + +E + + E+ L + + F Sbjct: 82 KLPNGTIRVLVEGMERAEIIEYLDNDEYYEVIAEERPEEETVDPEVDALMRTVLTQFEHY 141 Query: 530 KYFLPE---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + E + + L + + +DVR+ ++ L + Sbjct: 142 INLSKKVTPETLAAVSDIEEAGRLADVITSHLSLKIKDKQEILETIDVRKRLEKLLDILN 201 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R + + +I +++ + K + E L + + ++ + E Sbjct: 202 NEREVLELERKINQRVKKQMEKTQKEYY--LREQMKAIQKELGEKEG 246 >gi|313669590|ref|YP_004050015.1| DnaB domain-containing protein [Sulfuricurvum kujiense DSM 16994] gi|313156787|gb|ADR35462.1| DnaB domain protein helicase domain protein [Sulfuricurvum kujiense DSM 16994] Length = 407 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 11/145 (7%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L ++I +P+ +L+ + Q +++ + + K E + L Sbjct: 13 ERSILSSIIFNPSDFTYISNQLSREYFYLVAHQNIYTAMINLTAMDKPIDEEFLRSELNR 72 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 G D + AN + Y Q LA YK R L + +K Sbjct: 73 IGQ-----------FDERVMIEVLTANPIASITPYIQELAKYKDRRTLLGLSTQFKKAAQ 121 Query: 604 QVTAKGEAEKTAILISILHEVHIQI 628 A++ + + + ++ Sbjct: 122 AEDPINAAKELIVALEEGMSIDRRL 146 >gi|284929018|ref|YP_003421540.1| primary replicative DNA helicase [cyanobacterium UCYN-A] gi|284809477|gb|ADB95182.1| primary replicative DNA helicase [cyanobacterium UCYN-A] Length = 444 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 21/187 (11%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++L ++ P + + + Q+++ + K Sbjct: 3 NNNIPPQNIEAEESILGGILLDPEAMGRIVDLITPESFYVRAHQEIYEAALKLHSQGKPT 62 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF---- 588 + L + E + +D+ + + D L ++ Sbjct: 63 DFLTVKSVLEDHLLLEKIGGIDKLTQLLDRTVSAVNI---DRYAALIMDKYLRRQLISSG 119 Query: 589 -----------RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 R L +E EK+I +T K + + + ++ ++ +Q A+ Sbjct: 120 HEIVSLGFETTRDLEIVLDESEKKIFGLTQKRPQGGLVPISDTIIQTFNELEKLHNQTAL 179 Query: 638 --IE-GF 641 IE GF Sbjct: 180 PGIETGF 186 >gi|315654412|ref|ZP_07907320.1| replicative DNA helicase DnaB [Mobiluncus curtisii ATCC 51333] gi|315491447|gb|EFU81064.1| replicative DNA helicase DnaB [Mobiluncus curtisii ATCC 51333] Length = 458 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 13/177 (7%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + ++ L E +L +I + + Y+ L + ++ + +++ + + Sbjct: 5 DAPPLDRIPPHNILAEQCVLGAMILSKNAIADTYKLLLPSDFYDSRHEIIFNTILDLYAA 64 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN----IVDVRQGYQQALAL 584 P + L +RG + LD A IV + + + Sbjct: 65 GAASDPVTVPAELEKRGQLSRIGGLDYIHTVVHSVPTAANAAYYAQIVRDQATLRGLVEA 124 Query: 585 YKRFRLL---------SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 R L ++ +V+ K +E +L +L V +I Q + Sbjct: 125 GTRITQLGYAIDTTDADELINTAHAELDRVSEKRTSEDYRLLSELLTPVLDEIQQTD 181 >gi|308051536|ref|YP_003915110.1| putative conjugative transfer protein TraI [Legionella longbeachae NSW150] gi|288859961|emb|CBJ13946.1| putative conjugative transfer protein TraI [Legionella longbeachae NSW150] Length = 1956 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 55/420 (13%), Positives = 109/420 (25%), Gaps = 61/420 (14%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110 S + G ++ F G+ + G S F E++Q A +P + K +K Sbjct: 1576 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLQHAAQYIHY-IPEYERKTPQK 1634 Query: 111 EKIQTDLIRLIE----VATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 + + + E +A F S Y + RG+ + + R Sbjct: 1635 LNEKKE-REVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYENADLRFC-----R 1688 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 + K + + + +G + L Sbjct: 1689 SVYTKTQDGKKHVPALLAFS------------------------KDQQGNIHHVQITKLD 1724 Query: 227 KGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL 286 + K + K + + + EG LS+ Sbjct: 1725 SYSANKDKSC------DSVKQTFGL------INNYFVNLNHQGKGDIAYFTEGVETGLSI 1772 Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPG------LRAAYKAIDLVLC 340 QA V ++ + +V+C D D I Sbjct: 1773 LQANEHARVYAVLGKANFSNIDP-KDSPKHVVICLDNDGKDTYKYAKNEQTNTIIKAAEK 1831 Query: 341 HLIPGNRVN-FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD 399 G +V+ + D + + G+ +KL+ + + + + Sbjct: 1832 LHDSGIQVSLMIPKKENTDLNDVLVKEGREELKKLLSRLMS-----LDEFKKQCALENKE 1886 Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 + KN + IK+ + + RL Q K I E ++N Sbjct: 1887 PVLKKINQDKNIQSLIKNDRKLNTQNDNEFKRLNQGLIKGIKERVHQRELVERNRTFNKP 1946 >gi|198275329|ref|ZP_03207860.1| hypothetical protein BACPLE_01490 [Bacteroides plebeius DSM 17135] gi|255007930|ref|ZP_05280056.1| DNA primase [Bacteroides fragilis 3_1_12] gi|256838363|ref|ZP_05543873.1| DNA primase [Parabacteroides sp. D13] gi|298383994|ref|ZP_06993555.1| DNA primase [Bacteroides sp. 1_1_14] gi|301311555|ref|ZP_07217482.1| DNA primase [Bacteroides sp. 20_3] gi|313145642|ref|ZP_07807835.1| DNA primase [Bacteroides fragilis 3_1_12] gi|198271912|gb|EDY96182.1| hypothetical protein BACPLE_01490 [Bacteroides plebeius DSM 17135] gi|256739282|gb|EEU52606.1| DNA primase [Parabacteroides sp. D13] gi|298263598|gb|EFI06461.1| DNA primase [Bacteroides sp. 1_1_14] gi|300830641|gb|EFK61284.1| DNA primase [Bacteroides sp. 20_3] gi|313134409|gb|EFR51769.1| DNA primase [Bacteroides fragilis 3_1_12] gi|313158704|gb|EFR58092.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 312 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I I++ + Y ++ W PF E SF N + ++ + Sbjct: 3 IQEAKQ-IKIADYLQSLGYSPVKQQGN-----CLWYKSPFRQETEASFKVNTDRNLWFDY 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GLGRGGNII 65 >gi|166033512|ref|ZP_02236341.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC 27755] gi|166026697|gb|EDR45454.1| hypothetical protein DORFOR_03238 [Dorea formicigenerans ATCC 27755] Length = 623 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 15/98 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTIRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAG 97 F + S G + F+ G SF E+VQ L +G Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLLTGESG 84 >gi|74025020|ref|XP_829076.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834462|gb|EAN79964.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 865 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 34/293 (11%), Positives = 87/293 (29%), Gaps = 19/293 (6%) Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHI-K 416 DP+ ++ + +++ + + + E + + K Sbjct: 446 DPEDRTMVKSI-RMKQHKASVISILEQVRNEYCSLCCAVSLPDLVEAFRRKRQVNIEVAK 504 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +R + RL + ++ + + + ++ R + + + M V+ K Sbjct: 505 SAMIRDALEKQ--KRLFECAERKLEVEANRAKNLQERERLIELRNERLQEMMMEKVRRKR 562 Query: 477 SKKPSLREAALLLTLIN-------HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + ++ A + +E + L Q L + Sbjct: 563 EEDLIAQQNAAARIKLQQERNAEREKEYQRELQERLERAEERTARQQAARDHLLEQRRIR 622 Query: 530 KYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + EE R+ E ++ R+ + + +Q Q L + Sbjct: 623 RKKNAEERQARIERMAEMQEQQSEILRRKYEERDAKVQLVQEERERKQREAQELLAARAA 682 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639 + +E+ +Q Q E E + EV ++ Q+ + +E + E Sbjct: 683 KS-----QELREQARQRALLREEEVRQAALGQQQEVENRLRQLTKQREEEVAE 730 >gi|253579813|ref|ZP_04857081.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848812|gb|EES76774.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 770 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 51/154 (33%), Gaps = 30/154 (19%) Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV------RDAGLWSATTE 568 + L +E E + Q L EL++Q+ + + L + T E Sbjct: 130 HRSLKELFHRYCMENGKVSKELVAQILNIDNVEELVEQIAVNIPLSYQNKQKILEALTLE 189 Query: 569 ANIV-----------------DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 D+++ + + +R +L Q + I +++ + +A Sbjct: 190 ERYEVLGAILGNEIEIMQIGRDLQKKVKARIDKNQREYILREQLKLIREELGEDNTADDA 249 Query: 612 EKTAILISILHE-------VHIQIHQIESQEAMI 638 E+ + L + +I + ++ + + Sbjct: 250 EEFKKKLQELQAGDEVKEKISKEIERFKNTNSNV 283 >gi|258568786|ref|XP_002585137.1| predicted protein [Uncinocarpus reesii 1704] gi|237906583|gb|EEP80984.1| predicted protein [Uncinocarpus reesii 1704] Length = 813 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 95/298 (31%), Gaps = 26/298 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 ++ V+ R E E+ E + D+ Sbjct: 84 GDWLVASQIRLVTSWFVQLTAWTLWNPDRLREKMPEQKDTEQTEW--RCEELGY---DRD 138 Query: 420 LRYYYS---QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 R YY + R + A ++ S + ++ Sbjct: 139 ERLYYILDDNRLYRRTNPPIPTPKPAKPKVNSKRGRAAARAAKRRKQAESDVKSEDEEQV 198 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + + +TL ++ A++++ + + L L + + L E Sbjct: 199 NGDLEYKWECIAVTLADYQALIEKFRKTKDADE------KILRDRLIEEVLPTIEKLEEA 252 Query: 537 IHQRLCERGFGEL-LKQLDRQVRDAGL-----WSATTEANIVDVRQGYQQALALYKRFRL 590 + + R L L+++ R + L A ++++ + +A K+ Sbjct: 253 QQKEIQRREKELLNLQKMATAKRSSRLADKQERERQELAAAEELKKREAERIAA-KKEHQ 311 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE-GFGKMSGR 647 L + E ++++ ++ + + K L E + ++E+Q M+E G ++S R Sbjct: 312 LKEKIE--KERLYRLMTREQRLKDREEKRRLQE--QHLAEMEAQAKMLETGEARLSER 365 >gi|256827564|ref|YP_003151523.1| primary replicative DNA helicase [Cryptobacterium curtum DSM 15641] gi|256583707|gb|ACU94841.1| primary replicative DNA helicase [Cryptobacterium curtum DSM 15641] Length = 473 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 16/144 (11%), Positives = 39/144 (27%), Gaps = 4/144 (2%) Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 + + S+ K E ++L + + + E +L + Sbjct: 2 PQFNTGENGNTLRDPKTSAQASNKQIPHNIEAERSVLAACMLNQDAIDEVAAKLVPENFF 61 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ----LDRQVRDAGLWSATT 567 Q ++ + + + L G E + ++ L + T Sbjct: 62 RPAHQIIFRSMLDLHARSLPIDQISLAENLRAVGQLEAIGDKSYLVELADNTFALTNWIT 121 Query: 568 EANIVDVRQGYQQALALYKRFRLL 591 A+IV + + + L Sbjct: 122 HADIVKRTSILRDLIYASAQITAL 145 >gi|237836825|ref|XP_002367710.1| hypothetical protein TGME49_004380 [Toxoplasma gondii ME49] gi|211965374|gb|EEB00570.1| hypothetical protein TGME49_004380 [Toxoplasma gondii ME49] Length = 3085 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 34/272 (12%), Positives = 93/272 (34%), Gaps = 17/272 (6%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI--NHIKDQKLRYYYSQA 427 + RE + ++ E+ + N K + R ++Q Sbjct: 1899 QLRVRVWREKFWTLKRLDREKDRVIGEQVEQLRASEVLFLQMVGENETKLEHEREVHAQE 1958 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +L + +++A + + + + + + E A Sbjct: 1959 LARIAAELAG---LQTVCERERAERDAERAEVDVQHSAQLAEARARLADALREKAEEGAA 2015 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L + + QE + L + E E + + L E+ Sbjct: 2016 LRRALQEAEANLRRQQEREAEA-RRKHAEGLAAE--RGHREAARDETERLRKELEEKC-A 2071 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 LL++++ + + + + + + +Q L + + R+ EE+E+++ Sbjct: 2072 ALLREVEERGEERRRRESERDVERAEHAEKQRQICELRENEKKRQREVEELERRV----- 2126 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +E+ A ++L ++ Q Q+++Q++++E Sbjct: 2127 ---SEQRAREAALLRQIENQEDQLQNQQSLLE 2155 >gi|332827724|gb|EGK00459.1| hypothetical protein HMPREF9455_03102 [Dysgonomonas gadei ATCC BAA-286] Length = 1174 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 39/124 (31%), Gaps = 4/124 (3%) Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 E + E + + L+ + + D I Sbjct: 44 EYAAAAKQMKETRKELERLTKAGKEDSDEFKELEATLESVSSDMTDYKRKMVENTKAIEQ 103 Query: 574 VRQGYQQALALYKRFRL----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 R+ ++ + + + L ++ +E++ Q+ + E+ L L V ++ Sbjct: 104 NRKTVEEMVKTLRIEDMTMDQLKKRAKELQTQLDKTAEATHPEQYNALDKELKAVKSRMS 163 Query: 630 QIES 633 +++S Sbjct: 164 ELDS 167 >gi|332291760|ref|YP_004430369.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5] gi|332169846|gb|AEE19101.1| DNA primase [Krokinobacter diaphorus 4H-3-7-5] Length = 285 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 15 IPISN---LIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKG 71 I I ++G + + + W PF E SF + S +Y + G Sbjct: 14 ISIVEMLAVLGHF------PKRQSEREAWYLSPFRSETEASFKVSLSLNRWYDHGEGIGG 67 Query: 72 DHLSFLSALLGCSFIESVQRL 92 + + + + CS ++ L Sbjct: 68 NCIDLVCKIKECSVGTALYFL 88 >gi|148658380|ref|YP_001278585.1| ATPase [Roseiflexus sp. RS-1] gi|148570490|gb|ABQ92635.1| ATPase AAA-2 domain protein [Roseiflexus sp. RS-1] Length = 871 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 83/213 (38%), Gaps = 9/213 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R ++ + +++ + + + +AA++ + Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDAAIVAAAVLSD 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-ELLKQLD 554 + +++ I + +L + S +++ +R+ + E LK+ Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITS-----DPQELDDLKRRIMQLEIEREALKKEK 435 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + L E ++++ + A +R R + +++++QI Q + E + Sbjct: 436 DKASKERLEKLEQELA--NLQEQRRAVEAQLQREREQLARVQQLKEQIDQTRIEIERAQR 493 Query: 615 AILISILHEVH-IQIHQIESQEAMIEGFGKMSG 646 + E+ +++ +E Q A IE + SG Sbjct: 494 VYDYNKAAELQYGRLNTLERQLAEIEEHMRASG 526 >gi|307320178|ref|ZP_07599598.1| P4 alpha zinc-binding domain protein [Sinorhizobium meliloti AK83] gi|306894224|gb|EFN24990.1| P4 alpha zinc-binding domain protein [Sinorhizobium meliloti AK83] Length = 409 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 18/120 (15%) Query: 7 FIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 FI++ +++ KG++ CP K F + KG + C S Sbjct: 8 FIEEARG----VSVVDAAFSLGLVG-PTFKGNHAGPCPVCQGKD-RFAISSIKGAWNCRS 61 Query: 67 CHVKG-DHLSFLSALLGCS------FIESVQRLAAIAGVPLPVVDPKIEKKE--KIQTDL 117 C + G D +S ++ F+ + A + G PLP + + + + + + Sbjct: 62 CGIGGKDGISLVAHAGHIDLRSRAGFLTAC---AEVLGKPLPNEAERETEDQIAERRQRI 118 >gi|238760290|ref|ZP_04621433.1| Replicative DNA helicase [Yersinia aldovae ATCC 35236] gi|238701492|gb|EEP94066.1| Replicative DNA helicase [Yersinia aldovae ATCC 35236] Length = 468 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTAPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASNDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|297490519|ref|XP_002698244.1| PREDICTED: cut-like homeobox 1 [Bos taurus] gi|296473075|gb|DAA15190.1| cut-like homeobox 1 [Bos taurus] Length = 1532 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 99/286 (34%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 99 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 158 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + + L T + Sbjct: 159 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 216 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + +I +E++ + + L + E E + ++L L Sbjct: 217 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 276 Query: 552 Q-------LDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598 +++ + S E ++ Q + L L Q ++ Sbjct: 277 SQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQANLSKLRENSASQISQL 336 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 337 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPAEGAG 382 >gi|224026869|ref|ZP_03645235.1| hypothetical protein BACCOPRO_03628 [Bacteroides coprophilus DSM 18228] gi|224020105|gb|EEF78103.1| hypothetical protein BACCOPRO_03628 [Bacteroides coprophilus DSM 18228] Length = 312 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I I++ + Y ++ W PF E SF N + ++ + Sbjct: 3 IQEAKQ-IKIADYLQSLGYSPVKQQGN-----CLWYKSPFRQETEASFKVNTDRNLWFDY 56 Query: 66 SCHVKGDHL 74 G+ + Sbjct: 57 GLGRGGNII 65 >gi|257053797|ref|YP_003131630.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM 12940] gi|256692560|gb|ACV12897.1| chromosome segregation protein SMC [Halorhabdus utahensis DSM 12940] Length = 1188 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 13/151 (8%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 + + ++L D R E Q+L +K E+ L E + +L+ + Sbjct: 219 ETRLEQLEDERETALEYQELRDEKEEYEAYRKAAELEDKRDDL--AAVREEIAELEETLE 276 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRF-----RLLSRQKEEIEKQIAQVTAKGEAEK 613 D E +V + + A +R L R+ EEI+ +IA++ E+ + Sbjct: 277 DRQRELDEREGKVVRLEDELAELNAEIERKGEDEQLALKREIEEIKGEIARLEDAIESAE 336 Query: 614 TAILISILH------EVHIQIHQIESQEAMI 638 + E+ + I+ EA I Sbjct: 337 EKRDEAEARRREAFVEIDRKQETIDDLEADI 367 Score = 41.0 bits (94), Expect = 0.59, Method: Composition-based stats. Identities = 25/221 (11%), Positives = 71/221 (32%), Gaps = 14/221 (6%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R Y + + +++ + S ++ +++ + + + + + Sbjct: 705 EDERQEYREELSG-VEERLEDARDRKSEAADQVREIQAEIERREREREETEERIEQRREE 763 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E + + E ++ + + +L+ + L +D + + + Sbjct: 764 LAEIEDEREAVS------EEMDEIEADIEAVESEIADLEAEIADLEADIEDSQLPELTDE 817 Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + L + L LD + + L E I D+ + A + Sbjct: 818 AESLEGEIDEREDELDDLDAALNELQLEKQYAEDAIDDLHDQIETAQNRKAEQGD---RI 874 Query: 596 EEIEKQIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQ 634 EE+ +A +K + E A L + L ++ + + Sbjct: 875 EELNGNVADEESKLADKQEAVAELEAELADLKGDREDLREE 915 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 28/258 (10%), Positives = 80/258 (31%), Gaps = 12/258 (4%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 +++L E E E++ + R E+ + + ++ R + Sbjct: 234 EYQELRDEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQRELDEREGKVVRLE 293 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 D L +L + + K+ + S + + + REA + Sbjct: 294 DELAELNAEIERKGEDEQLALKREIEEIKGEIARLEDAIESAEEKRDEAEARRREAFV-- 351 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + + + + D+ D E + S + ++ + + + + E G Sbjct: 352 -------EIDRKQETIDDLEADIRETKVEKSSVKAEI-DDLEVDLAAVQEEIEEVGAE-- 401 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 +++ ++ + D+++ + L +R R E + + + + Sbjct: 402 FEEVRDELETKKASLEDAKERRNDLQREQDRLLDEARRRSNQQRDLESTIEDLQESIPEL 461 Query: 610 EAEKTAILISILHEVHIQ 627 +AE + + Sbjct: 462 DAEIADLEEERRKAEQNR 479 Score = 38.3 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 54/155 (34%), Gaps = 24/155 (15%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +E E+A + + QK V + ++ E +L + + + Sbjct: 178 REIIDEIAGVAEFD---QKKAQAFEELEVVEDRIDEADLRIEEKETRLEQLEDERETALE 234 Query: 559 DAGLWSATTE-------ANIVDVRQGY----QQALALYKRFRLLSRQKEE-------IEK 600 L E A + D R ++ L + R+ +E +E Sbjct: 235 YQELRDEKEEYEAYRKAAELEDKRDDLAAVREEIAELEETLEDRQRELDEREGKVVRLED 294 Query: 601 QIAQVTAKGE---AEKTAILISILHEVHIQIHQIE 632 ++A++ A+ E ++ L + E+ +I ++E Sbjct: 295 ELAELNAEIERKGEDEQLALKREIEEIKGEIARLE 329 >gi|169833409|ref|YP_001694581.1| DNA primase [Streptococcus pneumoniae Hungary19A-6] gi|168995911|gb|ACA36523.1| DNA primase [Streptococcus pneumoniae Hungary19A-6] Length = 361 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 16/111 (14%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I++ I I ++ + Y H E SF + + FS Sbjct: 3 IEECKQ-ISILDVANR---LGISFKQVSSSVY-----EHHEHD-SFRIFSTTNTFKWFSR 52 Query: 68 HVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 ++GD + F+ + G SF E++ L+ + ++++ + Sbjct: 53 DIQGDVIDFVRLVKGISFKEALAFLSE------EPFQKEAVQEKRERPFYY 97 >gi|22124491|ref|NP_667914.1| replicative DNA helicase [Yersinia pestis KIM 10] gi|45440329|ref|NP_991868.1| replicative DNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|51594729|ref|YP_068920.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108809955|ref|YP_653871.1| replicative DNA helicase [Yersinia pestis Antiqua] gi|108813510|ref|YP_649277.1| replicative DNA helicase [Yersinia pestis Nepal516] gi|145600899|ref|YP_001164975.1| replicative DNA helicase [Yersinia pestis Pestoides F] gi|150260634|ref|ZP_01917362.1| replicative DNA helicase [Yersinia pestis CA88-4125] gi|153948576|ref|YP_001402719.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758] gi|162421877|ref|YP_001605331.1| replicative DNA helicase [Yersinia pestis Angola] gi|165926684|ref|ZP_02222516.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. F1991016] gi|165936488|ref|ZP_02225056.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. IP275] gi|166010424|ref|ZP_02231322.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. E1979001] gi|166213911|ref|ZP_02239946.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. B42003004] gi|167402462|ref|ZP_02307919.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419167|ref|ZP_02310920.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426133|ref|ZP_02317886.1| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927525|ref|YP_002345400.1| replicative DNA helicase [Yersinia pestis CO92] gi|229836577|ref|ZP_04456743.1| replicative DNA helicase [Yersinia pestis Pestoides A] gi|229840185|ref|ZP_04460344.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842267|ref|ZP_04462422.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229903995|ref|ZP_04519108.1| replicative DNA helicase [Yersinia pestis Nepal516] gi|294502385|ref|YP_003566447.1| replicative DNA helicase [Yersinia pestis Z176003] gi|21957283|gb|AAM84165.1|AE013659_9 replicative DNA helicase [Yersinia pestis KIM 10] gi|45435185|gb|AAS60745.1| replicative DNA helicase [Yersinia pestis biovar Microtus str. 91001] gi|51588011|emb|CAH19615.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953] gi|108777158|gb|ABG19677.1| primary replicative DNA helicase [Yersinia pestis Nepal516] gi|108781868|gb|ABG15926.1| primary replicative DNA helicase [Yersinia pestis Antiqua] gi|115346136|emb|CAL19004.1| replicative DNA helicase [Yersinia pestis CO92] gi|145212595|gb|ABP42002.1| primary replicative DNA helicase [Yersinia pestis Pestoides F] gi|149290042|gb|EDM40119.1| replicative DNA helicase [Yersinia pestis CA88-4125] gi|152960071|gb|ABS47532.1| replicative DNA helicase [Yersinia pseudotuberculosis IP 31758] gi|162354692|gb|ABX88640.1| replicative DNA helicase [Yersinia pestis Angola] gi|165915604|gb|EDR34213.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. IP275] gi|165921307|gb|EDR38531.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990514|gb|EDR42815.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. E1979001] gi|166204886|gb|EDR49366.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. B42003004] gi|166963161|gb|EDR59182.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048150|gb|EDR59558.1| replicative DNA helicase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054844|gb|EDR64646.1| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679765|gb|EEO75868.1| replicative DNA helicase [Yersinia pestis Nepal516] gi|229690577|gb|EEO82631.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. India 195] gi|229696551|gb|EEO86598.1| replicative DNA helicase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706261|gb|EEO92269.1| replicative DNA helicase [Yersinia pestis Pestoides A] gi|262360468|gb|ACY57189.1| replicative DNA helicase [Yersinia pestis D106004] gi|262364414|gb|ACY60971.1| replicative DNA helicase [Yersinia pestis D182038] gi|294352844|gb|ADE63185.1| replicative DNA helicase [Yersinia pestis Z176003] gi|320013816|gb|ADV97387.1| replicative DNA helicase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 468 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNKMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|256086965|ref|XP_002579652.1| myosin heavy chain [Schistosoma mansoni] gi|238665120|emb|CAZ35891.1| myosin heavy chain [Schistosoma mansoni] Length = 1839 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 29/258 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 790 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 849 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 850 KDNQIRTLQSEMAQQDEMIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 903 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 904 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 963 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---------AILIS 619 A I + ++ L + L R+ +E++ +I ++ EAE+ L S Sbjct: 964 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 1020 Query: 620 ILHEVHIQIHQIESQEAM 637 L EV ++ + + A Sbjct: 1021 ELEEVVDRLEEQDGATAA 1038 Score = 39.5 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 14/294 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + E + + + ++ L KN + I D Sbjct: 1333 AEWQKKYADSQAELENAQRDARGQSTEIFRLKAQLEEVHEQMEGLRRENKNLSDEIHDLT 1392 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLS 477 + + + ++ E ++ +Q+ + Q S ++ ++ Sbjct: 1393 EQLGEGGRSVHEIDKNRRRLEMEKEELQAALEEAESALEQEEAKVQRAQLEMSQIRQEID 1452 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ + +E T NH ++ Q L E ++ L D E + L Sbjct: 1453 RRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKKKLEQDINELEVSLDGAN 1512 Query: 538 HQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKR 587 R + EL QL+ R +A G L + Sbjct: 1513 RARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAERRATVLAGELDELRIALD 1572 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 SR+ E E+ A A + +TA L + ++ + +++ +EA E Sbjct: 1573 QAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEADLAAMQADLEEAANE 1626 Score = 39.1 bits (89), Expect = 2.4, Method: Composition-based stats. Identities = 29/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E A Sbjct: 984 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQD-GATAAQSDL 1042 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 1043 TKKREAELMKLKRDLEDTRLQNEQAIATMRKKQSDAINELADQLDQANKAKAKAEKERSQ 1102 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ ++T + + Sbjct: 1103 FKAELDDAHNQVDSIMKAKLNSEKTVKALESQLQEVSVKLDEATRNLNEQASTKARSSQE 1162 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------------------- 612 V + +Q + L++ K+++ Q+ + E E Sbjct: 1163 VSELQRQLEEAESQLSQLNKIKQQLSAQLEEARHSLEDESRMKAKLNGEVRNLTSDLDSL 1222 Query: 613 --KTAILISILHEVHIQIHQIESQ 634 S ++ Q+ +++ + Sbjct: 1223 RETLEEEQSAKGDLQRQLQKLQGE 1246 Score = 37.2 bits (84), Expect = 8.9, Method: Composition-based stats. Identities = 26/279 (9%), Positives = 71/279 (25%), Gaps = 16/279 (5%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 + + + +D + E + + +E + K + + Sbjct: 1436 KVQRAQLEMSQIRQEIDRRLAEKEEEFEATRKNHQRAMESQQASLEAEAKGKAEAMRVKK 1495 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-SQRLMQSSLVKGKLSKKPSLREA 485 + + +L + K + + Q +L + L ++ E Sbjct: 1496 KLEQDINELEVSLDGANRARAEQEKNVKKFQQQVRELQSQLEDDQRQRDDLREQFQAAER 1555 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCER 544 + L E L + + E +R E Sbjct: 1556 RATVLA----GELDELRIALDQAERSRKIAEAERAEASDRATEMSTQTASLAAQKRKLEA 1611 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANI-------VDVRQGYQQALALYKRFRLLSRQKEE 597 + L+ +A + + ++RQ + + K + L Q +E Sbjct: 1612 DLAAMQADLEEAANEAKQADERAKKAMADSARVFEEIRQEQEHTQHVEKARKQLEIQVKE 1671 Query: 598 IEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIES 633 + ++ + L + E+ ++ + Sbjct: 1672 LMARLEDSESGAMKNGRKAMGKLEQRVRELETELEAEQR 1710 >gi|153852780|ref|ZP_01994217.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814] gi|149754422|gb|EDM64353.1| hypothetical protein DORLON_00199 [Dorea longicatena DSM 13814] Length = 623 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y + I + + + Q + + HD S +K Sbjct: 1 MQYTQAQIDRA-NAASLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 F + S G + F+ G SF E+VQ L Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQLL 79 >gi|149608333|ref|XP_001510226.1| PREDICTED: similar to A kinase (PRKA) anchor protein (yotiao) 9, partial [Ornithorhynchus anatinus] Length = 1089 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 30/304 (9%), Positives = 91/304 (29%), Gaps = 33/304 (10%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + A +++ L + E ++ + +L + + +L Sbjct: 607 RELEREAALEVLKARLAEGEERHSTELKDHGLAREKQLEDLREQMARRDREVASARLELA 666 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 ++ + + ++ + + + +++ L + + ++ Sbjct: 667 QARQRERQSSEEVRRLMGSVEELQKRQHAGGWAEQEAQRRLEQLRAELEETHGQQIVQMK 726 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNN--ELQKLWSFLFSDFVEQKYFLPEEIHQR- 540 + L L A+ EL + + +L + L ++ + + +R Sbjct: 727 KELTLQHLAQTEALRARHQAELERAAARDPVPPIDELRARLHEALAQRDGLSRDLVRERE 786 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL------------------ 582 + L ++L + L D+ + +AL Sbjct: 787 VASAEKSTLERRLGELQAELDLARERGRQAGADLERRLAEALGAAEDLKAQAATAAEVTR 846 Query: 583 -----------ALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILHEVHIQIHQ 630 + +L R+K+ + ++A+ A ++ +T +L E+ Sbjct: 847 ELQAKHEAEVTNYRIKLEMLEREKDAVLDRMAEAQEADLDSLRTQLLFRHEEELSRLRED 906 Query: 631 IESQ 634 +E + Sbjct: 907 LEGE 910 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 33/303 (10%), Positives = 79/303 (26%), Gaps = 28/303 (9%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 + E+ + K+E + + +D Sbjct: 698 WAEQEAQRRLEQLRAELEETHGQQIVQMKKELTLQHLAQTEALRARHQAELERAAA-RDP 756 Query: 419 K-----LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 LR +A+ R L + + E R + L + + Sbjct: 757 VPPIDELRARLHEALAQR-DGLSRDLVREREVASAEKSTLERRLGELQAELDLARERGRQ 815 Query: 474 GKLSKKPSLREA---------ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L EA + + E+ + R L++ + Sbjct: 816 AGADLERRLAEALGAAEDLKAQAATAAEVTRELQAKHEAEVTNYRIKLEMLEREKDAVLD 875 Query: 525 DFVEQKYFLPEEIHQRL---CERGFGELLKQLD-----RQVRDAGLWSATTEANIVDVRQ 576 E + + + +L E L + L+ R E + +R Sbjct: 876 RMAEAQEADLDSLRTQLLFRHEEELSRLREDLEGEHRANVARLKESLGLRYEQQLEGLRA 935 Query: 577 GYQQALALYK--RFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 ++ + + + L++RQ + + + + V + L E+ ++ + Sbjct: 936 ETRRQVEALQMEKDGLVTRQNQLLLELSALRDVQQSPGTSEAEETARRLRELQKEVEGLR 995 Query: 633 SQE 635 E Sbjct: 996 RGE 998 >gi|145301310|ref|YP_001144150.1| hypothetical protein ASA_P4G102 [Aeromonas salmonicida subsp. salmonicida A449] gi|142856087|gb|ABO92402.1| hypothetical protein ASA_P4G102 [Aeromonas salmonicida subsp. salmonicida A449] Length = 102 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + Q R HD S +K Sbjct: 1 MYYTQEQIDRA-NQADLVSFLQSQGEQLTRAGNEYRWKR-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 +Y S G + F+ G SF E+V+ + Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAVELI 79 >gi|73953673|ref|XP_546179.2| PREDICTED: similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg) [Canis familiaris] Length = 1885 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 34/331 (10%), Positives = 91/331 (27%), Gaps = 34/331 (10%) Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351 + + + L K V + D L + +L + Sbjct: 267 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENQRLLKQTEMLTQQRDTA 326 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + + + S R +L + D+ W+ E Sbjct: 327 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSEMTELRTMQAKMAKESEK 384 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 +D Y + +R Q + + + K + ++K S+ + Sbjct: 385 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 443 Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +K + + +EA LL + + L L E Sbjct: 444 IKDTVTMDAGRANKEAELLR-----------------------KQCKALCQELKEALQEA 480 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + +++ + D + + ++ + + K+ Sbjct: 481 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 537 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +SR+ +E+++Q+ + + + L++ Sbjct: 538 DVSRELKELKEQME--SQLEKEARFRQLMAH 566 >gi|196248040|ref|ZP_03146742.1| ATP-dependent chaperone ClpB [Geobacillus sp. G11MC16] gi|196212824|gb|EDY07581.1| ATP-dependent chaperone ClpB [Geobacillus sp. G11MC16] Length = 861 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 17/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ + + AL+ + Sbjct: 319 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------ 549 + +++ I + + + + S E + + + E + Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438 Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L+ L ++ + + +A ++ + + + R+ EE E Sbjct: 439 TRLEALQNELANLRERANAMKAKWQQEKEALDRVRRVREELERAKRELEEAE-------N 491 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKM 644 + K A L + ++ Q+ Q+E QEA +G GK+ Sbjct: 492 DYDLNKAAELRHGRIPQLEKQLKQLE-QEASGQGEGKL 528 >gi|194217372|ref|XP_001504251.2| PREDICTED: myosin XVIIIA isoform 4 [Equus caballus] Length = 2002 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 15/276 (5%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ VD KR + E+ + + D Q ++ Sbjct: 1370 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSDESQRALQQLK 1429 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + Q+L + +N + + + + KL ++ RE Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 +L L E + + + ++ + S E + +E Sbjct: 1490 ML---------LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1540 Query: 547 GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + L+ L+ +V+D I ++Q Q Y+ + + R+K E+E ++ Sbjct: 1541 KKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELESKLT 1600 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ + + ++ + + M++ Sbjct: 1601 TLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1636 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 29/286 (10%), Positives = 79/286 (27%), Gaps = 16/286 (5%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + + L K++ E + + ++ + + Sbjct: 1472 EEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ +L+ L K + K +L + K K+ ++ Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537 E+ L E + L L + ++ Sbjct: 1592 KRELESKLTTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQL 1651 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +L E F V+ E + + + AL ++ L R+K E Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706 Query: 598 IEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634 I+ ++ + + + ++ ++++ Q+ + + Sbjct: 1707 IQNRLEEDQEDMNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKE 1752 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 +E+ +E+ ++L ++ L++ + D L S EA I ++ + Sbjct: 1742 LQAQLEEANKEKQELQEKLQT--LQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1798 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 KR L+ + +E +++ + E E+ L L + ++ ++ +EA Sbjct: 1799 TQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1858 >gi|119498127|ref|XP_001265821.1| cell polarity protein (Tea1), putative [Neosartorya fischeri NRRL 181] gi|119413985|gb|EAW23924.1| cell polarity protein (Tea1), putative [Neosartorya fischeri NRRL 181] Length = 1496 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 27/240 (11%), Positives = 78/240 (32%), Gaps = 29/240 (12%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR-- 483 + ++ +L+ ++ + A S+R + + R Sbjct: 1105 RELKSKLENQQREAGALAIQHATLKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLR 1164 Query: 484 --EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS------DFVEQKYFLPE 535 E L +L H + + + + ++ L + +V+ + + Sbjct: 1165 ELEQQLSASLKAHEELRASFE---SREQEADRAYREKLEQLENDYQSAVHYVKGTEKMLK 1221 Query: 536 EIHQRL-----CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + L L+ R + A + A R QQ+++ ++ Sbjct: 1222 RMKDELTRYKAQNAKIQADLEAAQRSISQASALGSEAPAEWESERSKLQQSISDLQQDTA 1281 Query: 591 -----LSRQKEEIEKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639 L Q ++++ ++ A+ + ++ LI+ + ++ Q++ + A++E Sbjct: 1282 SSIANLESQIAKLKEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341 >gi|225619574|ref|YP_002720831.1| DNA helicase, DnaB type [Brachyspira hyodysenteriae WA1] gi|225214393|gb|ACN83127.1| DNA helicase, DnaB type [Brachyspira hyodysenteriae WA1] Length = 466 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 4/146 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +LL ++ + + ++ + + + L+ + E + L Sbjct: 10 AEESLLGAMLQNSQAVSVAISKIKSTDFYSERNRMLYESILEMHNRGIAINAETTLRYLK 69 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E G E + Q D +A L + Y + +A R L ++I+K Sbjct: 70 ENGLFEKIIQND----EAYLIRIIDGTPFHQNAKYYAEIIAEKSLLRDLITVSQDIQKSA 125 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 + E + EV + Sbjct: 126 YEAKDAETKEIADFAEKKIFEVTQRR 151 >gi|188989952|ref|YP_001901962.1| hypothetical protein xccb100_0556 [Xanthomonas campestris pv. campestris str. B100] gi|167731712|emb|CAP49890.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris] Length = 942 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 19/227 (8%) Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Y + DR Q + + R+ R + +++L + L Sbjct: 427 AEQRGYLLELLDR-----QPQVDKAQWQRRFDAMRQRFLGLRAQARQLAPDLSQRPALEA 481 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + E L ++H A + YQ L W ++ Sbjct: 482 ELRDTERKLKALELSHHASSLQAYQRARRQLSAQQNLLAQWQSDLESMR--PVVEDSDLF 539 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----------LALYKRF 588 +R+ GF + + + + +R Q A + Sbjct: 540 RRIEFEGFDQATGDEAEFIGLVEQVESELRGHYEQIRTAVSQIEATLATTPARFAALRLQ 599 Query: 589 RLLSRQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIES 633 +++ + + + + ++ ++G ++ A L++ E+ ++ ++++ Sbjct: 600 VAITQAQADYQALLERLKSQGVESPDQYAALVARSDELQKELKRLDA 646 >gi|126656761|ref|ZP_01727975.1| ClpB protein [Cyanothece sp. CCY0110] gi|126621981|gb|EAZ92689.1| ClpB protein [Cyanothece sp. CCY0110] Length = 872 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 76/206 (36%), Gaps = 14/206 (6%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + ++ + + AL+ + Sbjct: 321 YRKYIEKDAALERRFQEVLVNEPNVVDTISILRGLKERYEVHHGVKIADTALVAAAMLSN 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + + + ++ R Sbjct: 381 RYISDRFLPDKAIDLVDESAAKLKMEITSKPEELDEVDRKILQLEMERLSLQKEEDEVSR 440 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608 + E + D+++ Q A ++ + + Q E+++ +I Q Sbjct: 441 E------RLEKLEKELADLKEEQSQLNAQWQAEKEVIDQIRELKETIDQVNLEIQQAERD 494 Query: 609 GEAEKTAIL-ISILHEVHIQIHQIES 633 + K A L L ++ Q+ +ES Sbjct: 495 YDLNKAAELRYGKLTDLQRQVKDLES 520 >gi|114319748|ref|YP_741431.1| XRE family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226142|gb|ABI55941.1| transcriptional regulator, XRE family [Alkalilimnicola ehrlichii MLHE-1] Length = 1381 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 45/166 (27%), Gaps = 6/166 (3%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 ++ K+ E A+L L+ + + + + + + +W Sbjct: 2 AQTESSSAATDALKVPPHSIEAEQAVLGGLMLDNNAWDQVADRVTEEDFYRRDHRLIWRA 61 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + E + I + L L+ L + ++ + Y Sbjct: 62 IATLADEGQPVDAVTISEWLKNHEL------LEAAGGMGYLGALASDTPSAANIKAYADI 115 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + R L R ++ Q + + ++ Q Sbjct: 116 VRERSVMRQLIRVGTDVVDSAFQPEGRDSKTLLDEAERRIFQIAEQ 161 >gi|281337674|gb|EFB13258.1| hypothetical protein PANDA_015425 [Ailuropoda melanoleuca] Length = 1113 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 99/284 (34%), Gaps = 18/284 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 1 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 60 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q + ++ ++ + + KL + ++ Sbjct: 61 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 120 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + +I +E++ + + L + E E + ++L L Sbjct: 121 ELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 180 Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 ++ + A E I + + Q+ A + R S Q ++E+ Sbjct: 181 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 240 Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 241 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 284 >gi|238752149|ref|ZP_04613631.1| Replicative DNA helicase [Yersinia rohdei ATCC 43380] gi|238709622|gb|EEQ01858.1| Replicative DNA helicase [Yersinia rohdei ATCC 43380] Length = 468 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/143 (11%), Positives = 43/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 ++++S + K + + L ++G L + A L T A + Sbjct: 63 RRIFSEMQRLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|221633248|ref|YP_002522473.1| RecF/RecN/SMC N terminal domain-containing protein [Thermomicrobium roseum DSM 5159] gi|221155751|gb|ACM04878.1| RecF/RecN/SMC N terminal domain protein [Thermomicrobium roseum DSM 5159] Length = 850 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 41/254 (16%), Positives = 88/254 (34%), Gaps = 21/254 (8%) Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLR-YYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 + ++ ++DQ R A R +L QL ++ R Sbjct: 183 HDERTRSEQMLAALREQAAQAPALRDQVTRLENALDAQRAQLAQLREQLKLRQERLYRLQ 242 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRY 510 + R+R++ L++ + + + R A L P ++ + QEL ++ Sbjct: 243 LEVERYRERSARHAELVRECAKRHEEKDRLEQRLATQQAILQRAPE-IERRAQELDAVQR 301 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + +EL ++ + + I Q L +R K+ +R VR L + E Sbjct: 302 ELDELGRIAAE------------RQRIQQELLQRERDLESKRRERAVRKQALETRIKETE 349 Query: 571 IV-----DVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHE 623 +++ Q R L ++ E++ Q + L + E Sbjct: 350 QALAQRPELQARLVQIDEELARLATLRERQAELDNQKVQREARRGELRALANQLRQQMKE 409 Query: 624 VHIQIHQIESQEAM 637 + Q+ Q+ + +A+ Sbjct: 410 LQEQLQQLSAIDAV 423 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 14/214 (6%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + +T + + R + L K ++ R L L + Sbjct: 429 RPLTPEERARQEAQVRERGAQLRSTFDASRNEDLQLAKELEEIQQRRRELDAELRREGDL 488 Query: 498 LQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 E +L + EL +L L + F PE + + L L Sbjct: 489 QAEGGKIRGDLEKLARQERELAQLRREL-EQLSRSEEFDPEYRSLADEVQKLRQQLTALV 547 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEK 613 + + VRQ Q + L+ + E+E++IA + + E Sbjct: 548 -FDPERREALERRRRELEPVRQELLQLRDARTAVQHLAERLSELEREIATLETERVSLEA 606 Query: 614 TAILI----SILHEVHIQIHQI----ESQEAMIE 639 L VH ++ Q+ +S+E +IE Sbjct: 607 ELAAWSPPERELETVHSELEQLKQREQSEEELIE 640 >gi|289622727|emb|CBI50996.1| unnamed protein product [Sordaria macrospora] Length = 1436 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 6/274 (2%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + + + + + + + +++ + + D Sbjct: 460 LKTKFAQEQQDGDDGATEAHEKAIQELKASHESAIAELQKKIDELSSSQAANDADATKLE 519 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 I + +L S K A + + + + K + Sbjct: 520 ALESQIAELKAKLEASEQNAESAKAELESKVASFASLEAKVADMETELSAAKEEASKAAA 579 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 A L + + Q +A ++ + ++L + E + E +L Sbjct: 580 THAELQKRIDELTEETKSQEAIIAKLKKETASAEELQKRIEQLTEENTTY--EATLAKLK 637 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + L +++++ + EA I ++ + L KR LS ++ E I Sbjct: 638 EETSAA--EDLQKRIQELEAEAKDKEATIAQLKDTTTGSDELQKRIDELSNDSKDNEATI 695 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 Q+ K E L + E+ + E+ A Sbjct: 696 TQL--KEEVAAAEELQKRIQELTEEAKTKEATIA 727 >gi|313679014|ref|YP_004056753.1| metal dependent phosphohydrolase [Oceanithermus profundus DSM 14977] gi|313151729|gb|ADR35580.1| metal dependent phosphohydrolase [Oceanithermus profundus DSM 14977] Length = 583 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 23/214 (10%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ R RL+ ++ + E +++AR + Q + + + + E Sbjct: 45 AEEERSRLEAERRRLVEETQREVEQLRQSAREEAARLSEQARRELEEARAEARQLRERAE 104 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543 A + E + LA+ L +D + + ++ R Sbjct: 105 AEADRL---RAKLEAEMKERLAEE----------RQRLEADLARDRERIERDLEAIRRER 151 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++L R+ +A + + +Q + +R L R++ EIE ++ Sbjct: 152 EELKRQDERLARRGEQLDARAARLDELEEKLNAEERQLV---QRAEALDRREREIELKLE 208 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 ++ E L++ L E ++E ++A+ Sbjct: 209 EIAGLTREEARRQLLARLDE------ELEEEKAI 236 >gi|283850179|ref|ZP_06367468.1| replicative DNA helicase [Desulfovibrio sp. FW1012B] gi|283574205|gb|EFC22176.1| replicative DNA helicase [Desulfovibrio sp. FW1012B] Length = 485 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/213 (10%), Positives = 56/213 (26%), Gaps = 31/213 (14%) Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVK------GKLSKKPSLREAALLLTLINHPAILQEQ 501 R +NA+ G L L + K+ + E A+L ++ ++L Sbjct: 5 RKKPRNAKSSGPAGSGTTLTGQDLERVSSDVLRKVPPQNLEAEQAVLGGILLKNSVLFNL 64 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551 + + + + + ++ + + + + L G EL Sbjct: 65 VDLVGEDDFYSPAHRLVFQAILELSRKNAPIDLVSLAEALRTAGRLEEVGGPAYLAELTS 124 Query: 552 QLDRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 E + + + L + E+ IA Sbjct: 125 STVSAANALHHAGIVREKAVQRKLISAAVDIITKCYEGGQETENLLDESEQAIFAIADSR 184 Query: 607 AK----GEAEKTAILISILHEVHIQIHQIESQE 635 + + + + ++E++E Sbjct: 185 TTKGLHSSKDLVTRVFEQIEK------RMENKE 211 >gi|282600728|ref|ZP_05979595.2| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] gi|282571539|gb|EFB77074.1| conserved hypothetical protein [Subdoligranulum variabile DSM 15176] Length = 171 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 19/51 (37%) Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKE 111 YYCF C GD + + L G E+ +LA G+ + Sbjct: 6 RYYCFGCGATGDAVDLTAKLFGIGLREAAVKLAEDFGLNYDSRQKPSVRPR 56 >gi|259909530|ref|YP_002649886.1| DnaG primase-like protein, probable fragment [Erwinia pyrifoliae Ep1/96] gi|224965152|emb|CAX56684.1| DnaG primase-like protein, probable fragment [Erwinia pyrifoliae Ep1/96] Length = 48 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 2 NYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTP 51 P+ + +L + ++ L Q ++ + V CPFH EKTP Sbjct: 3 RIPQKELDELKRSVSLAALAESQGHRLRQQGRDRVL-----LCPFHQEKTP 48 >gi|319428192|gb|ADV56266.1| conserved hypothetical protein [Shewanella putrefaciens 200] Length = 393 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 24/147 (16%) Query: 41 ACCPFHDEK-TPSFHC---NDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 CP+H+ K SF + G CF+C V D L SF E+V+ + + Sbjct: 49 CGCPYHNSKSNDSFRLLKRAEEVGSAGCFTCGVWNDGFELLMHDRSISFSEAVKLVGSEV 108 Query: 97 G-------------VPLPV-----VDPKIEKKEKIQTDLIRLIEVATDFFHHS--LKNAR 136 G + + E+ K + +R+++ +D ++ L+ Sbjct: 109 GYYDLSGQASEAAKIEADKAQARWEKKREEQAVKDKQTKVRMLKRLSDIWNECFDLEAPE 168 Query: 137 DKRLHYYLDERGIDSHAIEMFKLGYAP 163 + Y RG+ + ++ + P Sbjct: 169 SEPARLYFQNRGLGNVGNLNSEVVFHP 195 >gi|270001439|gb|EEZ97886.1| hypothetical protein TcasGA2_TC000268 [Tribolium castaneum] Length = 766 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 QK+ + +++ + L+++L + L + Sbjct: 563 PLQQKIRQIVMKHGLDEPSADVAACISHAAQERLKNLIEKLA-IITGHRLDIVKKDLRYE 621 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQI----AQVTAKGEAEKTAILISILHEVHI-Q 627 Q L + R ++ EE+E+++ A+ +K E + A L + E+ + Sbjct: 622 VTNDVKGQLKFLEEVDRAERKRHEELEREMLLRAAKSRSKTEDPEQAKLKAKAREMQRVE 681 Query: 628 IHQIESQEA 636 + ++ +EA Sbjct: 682 MEELRQREA 690 >gi|119917099|ref|XP_601985.3| PREDICTED: cut-like homeobox 1 [Bos taurus] Length = 1532 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 99/286 (34%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 99 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 158 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + + L T + Sbjct: 159 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 216 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + +I +E++ + + L + E E + ++L L Sbjct: 217 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 276 Query: 552 Q-------LDRQVRDAGLWSATTEAN--IVDVRQGYQQALALYKRFRLLSR----QKEEI 598 +++ + S E ++ Q + L L Q ++ Sbjct: 277 SQIQKAPDVEQAIEVLTRSSLEAELAAKEREIAQLVEDVQRLQANLSKLRENSASQISQL 336 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 337 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPAEGAG 382 >gi|91077942|ref|XP_966532.1| PREDICTED: similar to transcription initiation factor [Tribolium castaneum] Length = 731 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 47/129 (36%), Gaps = 6/129 (4%) Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 QK+ + +++ + L+++L + L + Sbjct: 528 PLQQKIRQIVMKHGLDEPSADVAACISHAAQERLKNLIEKLA-IITGHRLDIVKKDLRYE 586 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQI----AQVTAKGEAEKTAILISILHEVHI-Q 627 Q L + R ++ EE+E+++ A+ +K E + A L + E+ + Sbjct: 587 VTNDVKGQLKFLEEVDRAERKRHEELEREMLLRAAKSRSKTEDPEQAKLKAKAREMQRVE 646 Query: 628 IHQIESQEA 636 + ++ +EA Sbjct: 647 MEELRQREA 655 >gi|152968159|ref|YP_001363943.1| ATPase AAA [Kineococcus radiotolerans SRS30216] gi|151362676|gb|ABS05679.1| ATPase AAA-2 domain protein [Kineococcus radiotolerans SRS30216] Length = 878 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 24/207 (11%), Positives = 72/207 (34%), Gaps = 12/207 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++ I + R +++ + +++ + + K ++ +AAL+ Sbjct: 319 YRERIEKDPALERRFQQVFVGEPSVPDTIGILRGLRERYEAHHKVAISDAALVAAATLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554 + + I + +L + + +E+ + + EL L + + Sbjct: 379 RYISGRQLPDKAIDLVDEAASRLRMEI-----DSSPVEIDELRRAVDRMRMEELALSKEE 433 Query: 555 RQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L + + + ++Q A R L Q +E+ Q ++ +G Sbjct: 434 DAASRNRLETLRAQLADKQEQLTALTARWEQEKAGLNRVGDLKHQVDELRSQAERLQREG 493 Query: 610 EAEKTAI-LISILHEVHIQIHQIESQE 635 + + + L + + ++ Q ++ E Sbjct: 494 DLGRASEILYGRIPALEAELRQAQAAE 520 >gi|212704874|ref|ZP_03313002.1| hypothetical protein DESPIG_02941 [Desulfovibrio piger ATCC 29098] gi|212671716|gb|EEB32199.1| hypothetical protein DESPIG_02941 [Desulfovibrio piger ATCC 29098] Length = 503 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 43/141 (30%), Gaps = 7/141 (4%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR-HRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + Q R +++ + + R + + + + ++ Sbjct: 3 FRQQNSSRTREIIMASNEPFGSASSPSPRQSGAPRTSEANDRARTAENDLLRRVPPHSPE 62 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEI- 537 E A+L ++ P ++ +AD + ++ + + E++ Sbjct: 63 AEQAVLGGILMRPQLMHVIVDLIADTDFYLPAHATIFRAFLDLYRKSAPIDLISTAEQLK 122 Query: 538 -HQRLCERGFGELLKQLDRQV 557 + L E G L L + V Sbjct: 123 SNNALEEAGGAVYLADLAQAV 143 >gi|126723390|ref|NP_597732.1| ankyrin repeat domain-containing protein 24 [Homo sapiens] gi|182627626|sp|Q8TF21|ANR24_HUMAN RecName: Full=Ankyrin repeat domain-containing protein 24 Length = 1146 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 66/198 (33%), Gaps = 3/198 (1%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + ++ + S + R ++ R + ++ + ++ + + RE + L Sbjct: 906 SEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALS 965 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 H I+ +A + EL + E E + + L Sbjct: 966 EHERIVGTLQANVAQLEGQLEELGRRHEK---TSAEVFQVQREALFMKSERHAAEAQLAT 1022 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 ++Q+R + ++ +A K+ LS++ +++ + + A Sbjct: 1023 AEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPAALATP 1082 Query: 613 KTAILISILHEVHIQIHQ 630 + L + ++ Q+ + Sbjct: 1083 EVEALRDQVKDLQQQLQE 1100 >gi|253991386|ref|YP_003042742.1| replicative DNA helicase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782836|emb|CAQ86001.1| replicative dna helicase [Photorhabdus asymbiotica] Length = 469 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 45/165 (27%), Gaps = 10/165 (6%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 A + + + KL E ++L L+ + + + + Sbjct: 2 AGKKSTHNKAVEPKDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSR 61 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 ++++S + + + L + G L A L + Sbjct: 62 PHRRIFSEMQRLLEMGNPIDLITLSESLEQSG------DLGNVGGFAYLAELSKNTPSAA 115 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 Y + R R + R + +IA + + L+ Sbjct: 116 NINAYADIV----RERAVVRDMIAVANEIADAGYDPQGRSSEELL 156 >gi|330752220|emb|CBL87178.1| DNA helicase, DnaB type [uncultured Sphingobacteria bacterium] Length = 515 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 12/203 (5%) Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 K ++ + S ++L GK+ + E A+L +++ L + L Sbjct: 5 KKSASKFGNLTRVSYEKNLANLSYGKVQPQALPLEEAVLGSIMLDKDGLPSVIEILRPDS 64 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL---KQLDRQVRDAGLWSAT 566 + QK++ + F + + +H+ L + + + + L + Sbjct: 65 FYKQGHQKIFEIMVGLFAKSQPIDLLTVHEALKKADYLDEVGGVNYLMELTNKVASAANI 124 Query: 567 TEANIVDVRQGYQQALA---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + ++ Q+ L ++ + + +E E+ + +T L Sbjct: 125 EYHARIIAQKYIQRELIRVSTMIISDSFEDNKDVLELLDEAERNLYDITDSNLNTGYESL 184 Query: 618 ISILHEVHIQIHQIESQEAMIEG 640 S++ + QI + + A + G Sbjct: 185 SSLVVKAQKQIEETSKKGAEMTG 207 >gi|159118026|ref|XP_001709232.1| Hypothetical protein GL50803_17283 [Giardia lamblia ATCC 50803] gi|157437348|gb|EDO81558.1| hypothetical protein GL50803_17283 [Giardia lamblia ATCC 50803] Length = 1523 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 84/217 (38%), Gaps = 20/217 (9%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + DR F + G R ++A + + ++ S ++ ++ + Sbjct: 227 DHAVKDVTDR----FNEEKKRIDGKHRAELQSAETQTARLATEIDALKSRLEQAEAEADA 282 Query: 482 LR---EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 LR E + + ++ ++A + E + S +F + + ++ Sbjct: 283 LRTRCEEDVDKQKAYYDDQIEYLNSQVASLT----EAARSASGMFEGELAARDRDITKLS 338 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEE 597 L + L+R+ G+ + + ++ Q +Q + L + L + +E Sbjct: 339 AELRD--------SLEREDYLKGMMNQLKREHKEELDQLRKQNVKDLDAQKADLMEKVKE 390 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E+ +A++ AK + A L++ L E + ++E Q Sbjct: 391 AERTLAEMLAKNTDGQIADLMAKLQEQEQRNERLEKQ 427 >gi|329118802|ref|ZP_08247499.1| replicative DNA helicase DnaB [Neisseria bacilliformis ATCC BAA-1200] gi|327465089|gb|EGF11377.1| replicative DNA helicase DnaB [Neisseria bacilliformis ATCC BAA-1200] Length = 505 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 59/207 (28%), Gaps = 12/207 (5%) Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 L + + G + + + S L E ++L L+ Sbjct: 15 LLNRPFSHRKGRLKNMNDSMNDYTSDDYPEYEESSPAANLPLPPHSVEAEQSVLGGLLLE 74 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 + + + +E + ++ + + E + + + L E + Sbjct: 75 NSAWDRIADVVVGEDFYRHEHRIIFRTITALINENRPADVITVQEFLERSDETEAAGGFN 134 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + A + + A R R + R+ E+ +IA+ E Sbjct: 135 YLISLAQNTPSAANI----------RRYAEIVRERAIMRRLAEVGTEIARNAYNPEGRDA 184 Query: 615 AILISILHEVHIQIHQIESQEAMIEGF 641 A L+ QI ES +GF Sbjct: 185 AQLLDEAENKVFQIA--ESTAKSKQGF 209 >gi|296141829|ref|YP_003649072.1| replicative DNA helicase [Tsukamurella paurometabola DSM 20162] gi|296029963|gb|ADG80733.1| replicative DNA helicase [Tsukamurella paurometabola DSM 20162] Length = 469 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 47/163 (28%), Gaps = 10/163 (6%) Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 + ++ + G+ + E ++L ++ + + + + Sbjct: 6 EQEFTPGPANRTDVPASDAPPAEDFGRQPPQDIAAEQSVLGAMMLSKDAIADVLEVVRPG 65 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 + Q ++ + + + + L +G +L R L + + Sbjct: 66 DFYRPAHQSVYDAILDLYGAGEPADAVTVSATLDRKG------ELKRVGGAPYLHTLIST 119 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 Y + +A + + R+ E +I Q G Sbjct: 120 VPTAANAGYYAEIVA----EKAILRRLVEAGTRIVQYGYSGSE 158 >gi|326955333|gb|AEA29026.1| replicative DNA helicase [Pseudonocardia dioxanivorans CB1190] Length = 458 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 16/139 (11%), Positives = 42/139 (30%), Gaps = 10/139 (7%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + + E ++L ++ + + + L + Q ++ + + Sbjct: 9 PAVAAPDYRQPPQDLTAEQSVLGGMLLSKDAIADVVEILRPDDFYRPAHQTVYDCILDLY 68 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L RG +L R L + Y + +A Sbjct: 69 GRGEPADAVTVSAELQRRG------ELIRLGGAPYLHTLIATVPTAANAAYYAEIVA--- 119 Query: 587 RFRLLSRQKEEIEKQIAQV 605 + + R+ E +I Q+ Sbjct: 120 -EKAILRRLVEAGTRIVQL 137 >gi|311105038|ref|YP_003977891.1| replicative DNA helicase [Achromobacter xylosoxidans A8] gi|310759727|gb|ADP15176.1| replicative DNA helicase [Achromobacter xylosoxidans A8] Length = 460 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 15/196 (7%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S L ++ E ++L L+ + L + + ++ + +W + Sbjct: 4 PADSQLEYLRVPPHSIEAEQSVLGGLLLDNSAWDRIADVLVEEDFYRHDHRLIWHHIARL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + +++ L G E L L A E Sbjct: 64 IGLARPADVITVNESLISAGKAEDAGGLAYLNALAHNTPSAANIRRYGEIVRERAMLRKL 123 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQ 630 +A L+ Q +E + + + +K A + +L +V +I + Sbjct: 124 VTIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGARGAAGFQEIQPLLTQVVERIDE 183 Query: 631 IESQEAMIEGFGKMSG 646 + +E + G +G Sbjct: 184 LYHREGSSDVTGVPTG 199 >gi|226291337|gb|EEH46765.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18] Length = 2429 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 41/433 (9%), Positives = 125/433 (28%), Gaps = 39/433 (9%) Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 N+P+ + L+ L + L + S + Sbjct: 1393 FNTPQPEMEKSSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1452 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV-- 351 ++S +++++ + +P I D D + + L VN + Sbjct: 1453 ILSPQRSSISDSNSPIRHLNNPEIEHVSDWD--DAISVGEDAKLRQRSRFFDRHVNEIVG 1510 Query: 352 -LLSRGEDPDSFIRCYGKTAFEKLIVESLPL--VDMLWKRETENRSFNTPDERAELEIHL 408 ++ DP + + + + + + +R ++ + + E Sbjct: 1511 GIIEDRLDPLERTLGVIQQSIDIIAANQVLNQSHNQNTRRSASAGVEHSDADDEDDEEDD 1570 Query: 409 KNCINHIKDQKLRY-----YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + R QA+ + L + E + Sbjct: 1571 EALRYRSRSPLNRRGRHVNSIKQAVAEALASHVPRI--EVPAPPPAPVVDLTEIHVALAE 1628 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKL 518 + + + + + P + ++ + HP + + ++ LQ + Sbjct: 1629 LKTLAAPKPVEPVPEPPINLKQVIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQAM 1688 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + E++Y + + + LL+ + TE D+++ Sbjct: 1689 LR-VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERT 1745 Query: 579 QQALALYKRFRLLSRQKEE---------------IEKQIAQVTAKGEAEKTAILI--SIL 621 +R L ++++E +E+ + + + ++ + + Sbjct: 1746 IPETERIERQSRLLQEQQESLQLTLSELSGKNISLEETLDEYRVSADQWRSQLEMVKREN 1805 Query: 622 HEVHIQIHQIESQ 634 ++ + I+ ++ Q Sbjct: 1806 KDLKLTINHMKEQ 1818 >gi|153814782|ref|ZP_01967450.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756] gi|145847813|gb|EDK24731.1| hypothetical protein RUMTOR_00997 [Ruminococcus torques ATCC 27756] Length = 635 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ L ++L YV R +Y + S N K + Sbjct: 2 EEYTREQLQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 Y FS + G + F+ G SF E+V+ L G + + + K++ + Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQK 102 >gi|138894350|ref|YP_001124803.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Geobacillus thermodenitrificans NG80-2] gi|134265863|gb|ABO66058.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Geobacillus thermodenitrificans NG80-2] Length = 861 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 78/218 (35%), Gaps = 17/218 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ + + AL+ + Sbjct: 319 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL------ 549 + +++ I + + + + S E + + + E + Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438 Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L+ L ++ + + +A ++ + + + R+ EE E Sbjct: 439 TRLEALQNELANLRERANAMKAKWQQEKETLDRVRRVREELERAKRELEEAE-------N 491 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKM 644 + K A L + ++ Q+ Q+E QEA +G GK+ Sbjct: 492 DYDLNKAAELRHGRIPQLEKQLKQLE-QEASGQGEGKL 528 >gi|324111161|gb|EGC05146.1| replicative DNA helicase [Escherichia fergusonii B253] Length = 454 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 10/136 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E + + + ++++S + K + + L Sbjct: 15 AEQAVLGGLMLDNCRWDEVADRIVADDFYTSVHREIFSEMERLLSHGKPIDLITLAEALE 74 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G +L+R A L + Y + R R + R+ + +I Sbjct: 75 QNG------KLERAGGFAYLAEMSKNTPSAANICAYADIV----RERAVVREMISVANEI 124 Query: 603 AQVTAKGEAEKTAILI 618 A+ + + L+ Sbjct: 125 AEAGYAQDGRGSNELL 140 >gi|317029425|ref|XP_001391561.2| myosin type II heavy chain [Aspergillus niger CBS 513.88] Length = 2405 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 12/262 (4%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + + +A LE K + + + L+ L + Sbjct: 1045 EIIQRFENEKHEMQARLEELEKKLAEAESSSLEKEAKIKELGQELKMLQSHLSLKERKLQ 1104 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 K + L + K K + E ++ I + Y+E Sbjct: 1105 DLETKLLKTDQDLEVKLSKTSRDLEESKKHIKELIEENRVIRQQITDLSSTSTGYEE--M 1162 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 +R +E+ L + E++Y E++ E L++L +V Sbjct: 1163 LRRKESEMAVLRNDAKKHEEEKRYLESEKVSLTTRHDSMQERLRELQAEVDAMRSEKVQL 1222 Query: 568 EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619 E DV++ + + + +LL +Q +E++ Q+ + A E+ + +++ Sbjct: 1223 EREAADVKKLLEAKISEDAEAGESRKLLEQQIQELKNQLFKAQADLSRERQSRDDVQMLA 1282 Query: 620 I--LHEVHIQIHQIESQEAMIE 639 L E+ + + + +IE Sbjct: 1283 EHNLAELKDKYTSLNESKIIIE 1304 >gi|301780872|ref|XP_002925852.1| PREDICTED: homeobox protein cut-like 1-like [Ailuropoda melanoleuca] Length = 1292 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 99/284 (34%), Gaps = 18/284 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q + ++ ++ + + KL + ++ Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQSLQTALEKTRT 209 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + +I +E++ + + L + E E + ++L L Sbjct: 210 ELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 269 Query: 554 DRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEK 600 ++ + A E I + + Q+ A + R S Q ++E+ Sbjct: 270 IQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQ 329 Query: 601 QIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 330 QLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373 >gi|291387249|ref|XP_002710199.1| PREDICTED: coiled-coil domain containing 100 [Oryctolagus cuniculus] Length = 986 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 91/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYSILEGKLQKTLIDLEKREQQLASAESELQREKKEVQLERERNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + + L Q+L+D L+K + + + Sbjct: 763 AHQVELERSKIKQLEEDK---HRLQQQLSDSENKYKILEKEFQQFKDQQSSKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 914 >gi|242022382|ref|XP_002431619.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] gi|212516927|gb|EEB18881.1| transcription initiation factor TFIID subunit, putative [Pediculus humanus corporis] Length = 921 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 19/149 (12%), Positives = 57/149 (38%), Gaps = 10/149 (6%) Query: 496 AILQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + Q + + D + + K+ + + +++ + C+ L+++L Sbjct: 699 QFVGTQIRSVKDEIFLHSIPLQNKIRQIVSNHGLDEPSSEVASLVSHACQERLKTLIEKL 758 Query: 554 DRQVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + + + ++ V+ + + L +R R Q+ E+ + A+ +K Sbjct: 759 A-CIAEHRIDVIKLDSRYEVVQDVKGQLKFLEELDRVERKRH-EEQERELLLRAAKSRSK 816 Query: 609 GEAEKTAILISILHEVHI-QIHQIESQEA 636 E + L + E+ ++ ++ +EA Sbjct: 817 SEDPEQVKLKAKAKEMQRAEMEELRQREA 845 >gi|307149748|ref|YP_003890791.1| DnaB/helicase domain-containing protein [Cyanothece sp. PCC 7822] gi|306986548|gb|ADN18426.1| DnaB domain protein helicase domain protein [Cyanothece sp. PCC 7822] Length = 744 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 24/192 (12%), Positives = 60/192 (31%), Gaps = 22/192 (11%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + + + K P E +L ++ + + L+ + ++ Sbjct: 2 TVANKPTEPKFLANPE-AEELILGGILFDSRAIAKVENILSPEHFYVRSHATIYQTALEL 60 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + L E+G E + + R + + ANI + + Sbjct: 61 YRSGLPTDLMTVSHHLEEKGVLEQIGGISRLAT--LIERTVSAANIDSYARNIVRKHWEK 118 Query: 586 KRFRLLSRQKEE------------IEKQIAQVTA----KGEAEKTAILISILHEVHI--Q 627 + + LS + E E I Q + G+ + I+ + ++ Sbjct: 119 RELQSLSYKITEWVEDPNYSPAQIAELIIHQAQSLTIASGDKSLLSRAIAQIKQILKIPD 178 Query: 628 IHQIESQEAMIE 639 + +++ Q A +E Sbjct: 179 LSELQ-QNAKLE 189 >gi|134076038|emb|CAK39397.1| unnamed protein product [Aspergillus niger] Length = 2406 Score = 48.0 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 12/262 (4%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + + +A LE K + + + L+ L + Sbjct: 1045 EIIQRFENEKHEMQARLEELEKKLAEAESSSLEKEAKIKELGQELKMLQSHLSLKERKLQ 1104 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 K + L + K K + E ++ I + Y+E Sbjct: 1105 DLETKLLKTDQDLEVKLSKTSRDLEESKKHIKELIEENRVIRQQITDLSSTSTGYEE--M 1162 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 +R +E+ L + E++Y E++ E L++L +V Sbjct: 1163 LRRKESEMAVLRNDAKKHEEEKRYLESEKVSLTTRHDSMQERLRELQAEVDAMRSEKVQL 1222 Query: 568 EANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA----ILIS 619 E DV++ + + + +LL +Q +E++ Q+ + A E+ + +++ Sbjct: 1223 EREAADVKKLLEAKISEDAEAGESRKLLEQQIQELKNQLFKAQADLSRERQSRDDVQMLA 1282 Query: 620 I--LHEVHIQIHQIESQEAMIE 639 L E+ + + + +IE Sbjct: 1283 EHNLAELKDKYTSLNESKIIIE 1304 >gi|260469742|ref|ZP_05813901.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] gi|259028474|gb|EEW29791.1| conserved hypothetical protein [Mesorhizobium opportunistum WSM2075] Length = 434 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 16/95 (16%) Query: 3 YPRDFIKDLLIHIPISNLI-----GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCND 57 P + + + I ++ + D R CP + F + Sbjct: 2 IPAEIVSRARD-MSIVDVALALGAAEGCKIDERGV---------PCPCCGGRD-RFSLDK 50 Query: 58 SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 K + C + GD ++ + + CSF E++++L Sbjct: 51 GKNVFLCRASSAGGDPIALVQHVHQCSFAEAIEQL 85 >gi|242310327|ref|ZP_04809482.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] gi|239522725|gb|EEQ62591.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489] Length = 340 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 49/352 (13%), Positives = 97/352 (27%), Gaps = 49/352 (13%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP----------LPV 102 + N + CF+C++ G+ + F ++ + L + +P Sbjct: 1 MYVNMKQNTCKCFACNLGGNGIEIAKFAFNGDFKKACEFLHSQFNIPFLDDSIITSGFTA 60 Query: 103 VDPKIEKKE---------KIQTDLIRLIEVATDFFHH----SLKNARDKRLHYYLDERGI 149 K KKE K L ++ E+ + LK Y L Sbjct: 61 PSFKAPKKEVQYMNFIRDKQYQSL-KVAELMPKYKQEDRLGKLKILYSFVYRYSLMTNQA 119 Query: 150 DSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL------LIDGDNSATSYDRFR 203 + AP + + K + I L I N + Sbjct: 120 KKEEYYKNRGIQAPLDKIGFLSYADVKSLEKSLISFFPLEDLTSFKIFNKNRVGWNYGYD 179 Query: 204 NRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIR 263 ++ + F R+L+ + E +F +Y Sbjct: 180 IAIVPCFDLYSDLITGFSVRSLNPNN----RGAKELNVFCSD-IVYPMPF--------NL 226 Query: 264 KDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK--LSPRIVLCF 321 + + FI + EG++D LS + + V + A + +++CF Sbjct: 227 TNENLRNKDFIWICEGHIDALSGISSSKREDVCFISFAGVYTYKDEILGLLRGKNVMICF 286 Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFE 372 D D G + ++L G D + ++ + Sbjct: 287 DNDTAGKQG---GMELGDKLKKLGVNTFIASWDNNYNDLNDLLKANALADIK 335 >gi|114328881|ref|YP_746038.1| replicative DNA helicase [Granulibacter bethesdensis CGDNIH1] gi|114317055|gb|ABI63115.1| replicative DNA helicase [Granulibacter bethesdensis CGDNIH1] Length = 507 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 10/167 (5%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 S + +L E ALL L+ + + + LA + + +L+ + Sbjct: 8 SPSEPALLGLSQRLPPSNHQAEQALLGALLTNNKAYERVSEFLAPEHFADPIHGRLYHSI 67 Query: 523 FSDFVEQKYFLPEEIHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + G L +L + A + Sbjct: 68 ARRIETGQLADAITLKAEYEHSGLLDPVGGSAYLGKLMSAMVGIINAGEYGRA----IHD 123 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + + + +++R + ++A+ + E + L E Sbjct: 124 AWLRRQLIDLGEHVVNRAFGAADDAAQALSAREQLETAEQTLFDLAE 170 >gi|328702403|ref|XP_001952092.2| PREDICTED: myosin heavy chain, muscle isoform 1 [Acyrthosiphon pisum] Length = 1969 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1579 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1638 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + S + ++ + E A+ E Sbjct: 1639 NKANAEAQKNIKRYQQQLKDVQTALEEESRAREDAREQLGISER-------RANALQNEV 1691 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE----IHQRLCERGFGELLKQLDRQV 557 + + + +++ L + + +R E L LD + Sbjct: 1692 EESRTLLEQSDRGRRQVEQELADAHEQLNELSAQATSISAAKRKLEGELQTLHSDLDELL 1751 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E QI ++ + + + L Sbjct: 1752 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALETQIKELQVRLDEAENNAL 1811 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1812 KGGKKAIQKLEQRVRELENE 1831 Score = 41.0 bits (94), Expect = 0.56, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 15/222 (6%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARH--RDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 I +R Q + E + R ++ ++L + S +S E Sbjct: 1679 ISERRANALQNEVEESRTLLEQSDRGRRQVEQELADAHEQLNELSAQATSISAAKRKLEG 1738 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L + +L E + + +L L + E++ + L + Sbjct: 1739 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALETQ- 1795 Query: 546 FGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 EL +LD +A + VR+ + +R + + E++I + Sbjct: 1796 IKELQVRLDEAENNALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKSERRIKE 1855 Query: 605 VTAKGEAEK---------TAILISILHEVHIQIHQIESQEAM 637 ++ +G+ ++ L + QI + E A+ Sbjct: 1856 LSFQGDEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1897 >gi|327273287|ref|XP_003221412.1| PREDICTED: ras and EF-hand domain-containing protein-like [Anolis carolinensis] Length = 693 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 16/225 (7%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 Q + + + + E + + + + + L + K+ + E Sbjct: 89 QFLLGKKGSISEMQGHEPENLYQPQWEESNTDIDEEDQFSDLMERLGASNVFKEENDVEK 148 Query: 486 ALLLTLINHPAILQ-------EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 L N P +L + + +L ++ Y+ N L+ + + E+ L EE+ Sbjct: 149 LWLHLKKNEPHLLSSFEVFLAKVFSQLQEVNYEKNALESALQKKIAAYDEEIQHLYEEME 208 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 Q++ LLK R + E ++ Q Q+ L +++ L K+E Sbjct: 209 QQIKNEKEAFLLKDTARFQSRSQDLEHKLEVKEQELEQLAQKQKRLEGQYKDLHNDKQET 268 Query: 599 E-----KQIAQVTAKGEAEKTAILI----SILHEVHIQIHQIESQ 634 + ++ + E E+T+ + L + + +++ + Sbjct: 269 KVENTKLRLTNQELQNELERTSQALAIAQQQLQVLQDEAKELQEE 313 >gi|225017376|ref|ZP_03706568.1| hypothetical protein CLOSTMETH_01302 [Clostridium methylpentosum DSM 5476] gi|224949786|gb|EEG30995.1| hypothetical protein CLOSTMETH_01302 [Clostridium methylpentosum DSM 5476] Length = 352 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 30/243 (12%), Positives = 71/243 (29%), Gaps = 40/243 (16%) Query: 9 KDLL--IHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ + I +L Y + ++ AV + + + F Sbjct: 14 DEIRKANSVDILSLARGYGYEPEKAGRKAVHMKHSGG----------LYIFPENNRF--F 61 Query: 66 S-----CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEK----KEKIQTD 116 VKG + F+ SF E+V +L P +++ +EK + Sbjct: 62 QWTGPDDGVKGGAIDFVMREENLSFPEAVGKLIGK------EFSPSVKQVVPYEEKEREP 115 Query: 117 LI-----RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLRE 171 L+ ++ A ++ S++ K + ++++ + I + D+ + R Sbjct: 116 LVLPEKADNMKRAY-WYLVSVRGISPKIVSHFMNRKMIYQEKKYGNCVFVGYDAEGTARY 174 Query: 172 HL----RQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSK 227 R + + + + + S F GR + Sbjct: 175 CSMRAARDNSSFKMDATGSDKSYPFFHEGKTDLLIVTEAPIDLMSHASIAADFYGRDWMQ 234 Query: 228 GES 230 Sbjct: 235 DHR 237 >gi|217978349|ref|YP_002362496.1| putative DNA primase [Methylocella silvestris BL2] gi|217503725|gb|ACK51134.1| putative DNA primase [Methylocella silvestris BL2] Length = 388 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 40/261 (15%), Positives = 77/261 (29%), Gaps = 23/261 (8%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEK 112 F N K +YC + + GD ++ + G SF+ +V+ + G LP +E E Sbjct: 18 FAVNLRKNVWYCRASGIGGDAIALAQHIDGSSFLVAVETI---LG-ELPPGLGPVEYDEA 73 Query: 113 IQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREH 172 +T L D+ K ++ + + + + A + + + Sbjct: 74 KRTRENGLASARADWRREQ---DGAKTEQHFRERERRAARRLWIEAAPIAGTTGEAYLKL 130 Query: 173 LR---QKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 G A L + LI I + G+ + + Sbjct: 131 RGVESPPGARLRFHANAQLWDRPKDQGGKIVHSGPALIAAIEGASGRFSGVQRTWIDLAQ 190 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQ---------KSIRKDVRRNSSSFIILVEGY 280 I+ + + A ++ ++ R + L EG Sbjct: 191 PK----GKALIIHPETGEVLPSKKARGSIKGGTVLLRRPETAEFPGDRQICRRLFLGEGI 246 Query: 281 MDVLSLCQAGVQNVVSSLGTA 301 VLS+ A + L A Sbjct: 247 ETVLSVHAAMREANDPLLEGA 267 >gi|39938862|ref|NP_950628.1| hypothetical protein PAM_376 [Onion yellows phytoplasma OY-M] gi|39721971|dbj|BAD04461.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 130 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55 MNY ++ IK + H P+S V + N + ++ CP H K P+ H Sbjct: 1 MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHF 51 Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113 +C+ C D + A+ SF E++Q++A ++ + ++ KI Sbjct: 52 TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110 Query: 114 Q----TDLIRLIE 122 L + ++ Sbjct: 111 TINPLKQLYQPMK 123 >gi|312886996|ref|ZP_07746600.1| mobilizable transposon, excision protein, putative [Mucilaginibacter paludis DSM 18603] gi|311300308|gb|EFQ77373.1| mobilizable transposon, excision protein, putative [Mucilaginibacter paludis DSM 18603] Length = 319 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 11 LLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCH 68 + + I+ L+ + Y + T +V D K PS ND+ G +Y Sbjct: 10 IREQVSITALLARLGYQPAHKSGTESVYRSVLRQ----DGKKPSLCVNDTLGVWYDKGTG 65 Query: 69 VKGDHLSF 76 G+ + F Sbjct: 66 KGGNVIDF 73 >gi|260592920|ref|ZP_05858378.1| toprim domain protein [Prevotella veroralis F0319] gi|260535120|gb|EEX17737.1| toprim domain protein [Prevotella veroralis F0319] Length = 686 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 90/333 (27%), Gaps = 51/333 (15%) Query: 43 CPFHDEKTPSFHCNDSKGF----YYCFS-CHVKGDHLSFLSALLGC----SFIESVQRLA 93 PF+D+K S H + +Y GD F++ + G SF E ++ + Sbjct: 34 SPFYDDKRASCHIFYDRKSSSYKFYDHGDTTYSGDCFWFVATMRGLNLKTSFPEVLETIV 93 Query: 94 AIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 G L + D H + Sbjct: 94 QELG----------------------------------LYSLCDGEQHSKHITQSYKKTI 119 Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213 + + Q A I D R R + S+ Sbjct: 120 GFSPETDMPKHTVERPYSFEIQPFDDGLLNYWAHYGIHEDALRRFRVRSLKR--YESISA 177 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILF--HKGKNLYNFFGALNYLQKSIRKDVRRNSS 271 G+ G Y+ + ++ H K + +G + Sbjct: 178 EGRKFELYG--SPTEPMFAYIGNGYVKIYRPHSPKIRF-LYGGRMPATYCFGMEQIPAKG 234 Query: 272 SFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRA 330 + + G DVLSL G + + + + L I+L +D D+ G+R Sbjct: 235 DMLFITGGEKDVLSLYAHGFNAICFNSETAQIPTSIIESLQLRFRHIILLYDADETGVRE 294 Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 +++ + + + + + +D F Sbjct: 295 SHRQAEHLAEYKVLNLSLPLSGTKSEKDISDFF 327 >gi|222083246|ref|YP_002542649.1| hypothetical protein Avi_9158 [Agrobacterium vitis S4] gi|221738626|gb|ACM39464.1| conserved hypothetical protein [Agrobacterium vitis S4] Length = 320 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 22/36 (61%) Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104 KGD S + + G SF++++ R+A++ GV L + Sbjct: 61 AKGDVFSLIQHMEGFSFLDALNRVASLVGVDLQEPE 96 >gi|123444027|ref|YP_001007997.1| replicative DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163186|ref|YP_004299763.1| replicative DNA helicase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122090988|emb|CAL13871.1| replicative DNA helicase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318603929|emb|CBY25427.1| replicative DNA helicase [Yersinia enterocolitica subsp. palearctica Y11] gi|325667416|gb|ADZ44060.1| replicative DNA helicase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861936|emb|CBX72105.1| replicative DNA helicase [Yersinia enterocolitica W22703] Length = 468 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L+ + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|84684073|ref|ZP_01011975.1| hypothetical protein 1099457000262_RB2654_16531 [Maritimibacter alkaliphilus HTCC2654] gi|84667826|gb|EAQ14294.1| hypothetical protein RB2654_16531 [Rhodobacterales bacterium HTCC2654] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 13/93 (13%) Query: 5 RDFIKDLLIH---IPISNLIGQYVD---WDRRKTNAVKGDYWACCPFHDEKTPSFHCNDS 58 I+D +PI L+ + + R+ G+ CP T F N + Sbjct: 26 NAVIEDRKAQAKALPIGELV-ERLQIPNLKRQ-----SGELVGPCPACGG-TDRFAINAA 78 Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQR 91 KG + C SC G ++ + +L C F ++ Sbjct: 79 KGVFNCRSCGANGGGVNLVRHVLACDFGAAIDW 111 >gi|317500286|ref|ZP_07958513.1| toprim domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316898329|gb|EFV20373.1| toprim domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 635 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ L ++L YV R +Y + S N K + Sbjct: 2 EEYTREQLQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 Y FS + G + F+ G SF E+V+ L G + + + K++ + Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTAKEDAGRQK 102 >gi|212530168|ref|XP_002145241.1| dynactin, putative [Penicillium marneffei ATCC 18224] gi|210074639|gb|EEA28726.1| dynactin, putative [Penicillium marneffei ATCC 18224] Length = 1340 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 67/221 (30%), Gaps = 6/221 (2%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++ +L+ + +K + + A +G Q+L + + Sbjct: 294 LEDLKTKLKVMEKKRAEDRERLKSLERLQAERDKYEGIIQKLQAKYQPQQIELTDLKKKI 353 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L I E L D ++ ++ + K L E + R Sbjct: 354 RETEAKLEQAERIQAEHESILEVAALDREMAEETAEAFKAECQDYKIRLEELQLELEVLR 413 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603 E L + + E +R+ + + ++ L Q +E++ + Sbjct: 414 DENEELSNVMSPEDKSSQGWLQMEKTNERLREALIRLRDMTQQTEAELRDQIKELQDDLE 473 Query: 604 Q-----VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + EK + + E+ Q+ E MIE Sbjct: 474 EYTTVKAEYESIKEKLLASETNVDELKQQLETALGAEEMIE 514 >gi|119502822|ref|ZP_01624907.1| replicative DNA helicase [marine gamma proteobacterium HTCC2080] gi|119461168|gb|EAW42258.1| replicative DNA helicase [marine gamma proteobacterium HTCC2080] Length = 444 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 14/169 (8%) Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E +++ L+ P + + + E + ++ + + Sbjct: 2 QPQSVEAERSVIGGLLISPEGWDAIAEVVVSEDFYRPEHRAIFRQIAKLVDLGQPVDVIT 61 Query: 537 IHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-- 584 + RL G EL + +A E ++ G Q +A Sbjct: 62 VADRLLATGELDAAGGHTYLAELAETTPTAANIRAYATAVHERAVLRKLIGAAQDIASTG 121 Query: 585 -YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQI 631 + R +E E++I Q++ +G A + +L +I ++ Sbjct: 122 FHPEGRSAEELLDEAERRIMQISEEGPKTGGARAMEPLLQGALERIEEL 170 >gi|238789908|ref|ZP_04633688.1| Replicative DNA helicase [Yersinia frederiksenii ATCC 33641] gi|238721981|gb|EEQ13641.1| Replicative DNA helicase [Yersinia frederiksenii ATCC 33641] Length = 468 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 15/143 (10%), Positives = 44/143 (30%), Gaps = 3/143 (2%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + KL E ++L L+ + +A + + Sbjct: 3 AKKPTNNMTEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPH 62 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 +++++ + K + + L ++G L+ + A L T A + Sbjct: 63 RRIFTEMQRLLENSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAY 119 Query: 576 QGYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 120 ADIVRERAVVREMISVANEIADA 142 >gi|304437861|ref|ZP_07397809.1| replicative DNA helicase DnaB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369161|gb|EFM22838.1| replicative DNA helicase DnaB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 439 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 47/147 (31%), Gaps = 10/147 (6%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + +G++ + E ++L +++ PA + + + L + + ++ + + Sbjct: 1 MPEGRVPPQSIEAELSVLGSMMLKPAAVSQAVELLHAEDFYRQAHRAVFEAMELLLRNGE 60 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + L + G E + + +T A + + Sbjct: 61 PVDIVTVTESLKKSGLLEQVGGISFLANLTNTVPSTANLAH----------YAKIVKEKA 110 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + R + +IA + + L Sbjct: 111 VLRALIDASTEIAGAAYEASEDIAEQL 137 >gi|281207953|gb|EFA82132.1| hypothetical protein PPL_05037 [Polysphondylium pallidum PN500] Length = 1191 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 66/201 (32%), Gaps = 8/201 (3%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + + +K + ++ R L K + E L + Sbjct: 241 DRLLKLLDQEREQHQKALKAAQEQEQRDRQFAEKLQKEQEEAAKLEAERTALKQALQ--- 297 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + E + + + + +++K E +R+ E+ EL++Q Sbjct: 298 ---KHESERKKLEEQAEQAKAQKEKI-DLEMKKKQEEEIEKQKRIFEKQQKELIEQ-QIA 352 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + ++ + Q+ L K L ++ + E+ + + + + + Sbjct: 353 LEAKRQKELEHNKELLRLHDSDQRQLEELKNKLDLLQRNQSEEEMMKKHEIELKRQNELE 412 Query: 617 LISILHEVHIQIHQIESQEAM 637 L+ + E+ Q +++ +A+ Sbjct: 413 LVKHIEELERQKVELQKLQAL 433 Score = 38.3 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 104/317 (32%), Gaps = 49/317 (15%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + + ++ E P+ + + D+ Sbjct: 86 PMLSDKRQVYKEIKNIVGEIDPMQQSAIFDVYTATGGKIQETAQIVHSWTT-------DE 138 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L + + + +++ + R ++ + + +R + +L + +L Sbjct: 139 ALEEQ--KRVMEIMEKERESLRLAKEEQLRRHQQMIQQQKIAAEKERAERDALEQKRLDL 196 Query: 479 KP---SLREAALLLTLINHPAILQEQ---------------YQELADIRYDNNELQKLWS 520 + RE L+ L+ +++++ ++ ++ + E ++ Sbjct: 197 QRVEQERREKERLVLLMREQELIKQEEEKQRQEQERKRREQVEQDRLLKLLDQE-REQHQ 255 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 EQ+ + ++L + E +L+ + E+ + + +Q Sbjct: 256 KALKAAQEQEQRDR-QFAEKLQKE--QEEAAKLEAERTALKQALQKHESERKKLEEQAEQ 312 Query: 581 ALALYKRFRLL-----------------SRQKEEIEKQIA-QVTAKGEAEKTAILISILH 622 A A ++ L +QKE IE+QIA + + E E L+ + Sbjct: 313 AKAQKEKIDLEMKKKQEEEIEKQKRIFEKQQKELIEQQIALEAKRQKELEHNKELLRLHD 372 Query: 623 EVHIQIHQIESQEAMIE 639 Q+ +++++ +++ Sbjct: 373 SDQRQLEELKNKLDLLQ 389 >gi|255103323|ref|ZP_05332300.1| hypothetical protein CdifQCD-6_21095 [Clostridium difficile QCD-63q42] Length = 353 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 40/396 (10%), Positives = 99/396 (25%), Gaps = 67/396 (16%) Query: 10 DLLIHIPISNLIG--QYV--DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ +I +Y+ D + + C H+ + ++C+ Sbjct: 2 EIKDLTN-EQVINFMEYLGSDLSPKSNDRQLIFNTCLC--HNGDSYKLFYYTESKTFHCY 58 Query: 66 S-CHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVA 124 S C G + L + F +++ + G+ + K + +K + + ++ Sbjct: 59 SSCGHIGSLIDLLIHINKYEFKDAINEIKDFFGISNQPMLRKGFRIKKKVEQIHDIKDIQ 118 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + L K Y ++ + + Sbjct: 119 IE-----LLPTPKKPYVYKTFQQVPIEEWENENISFEVLKTYQVYYNLYENQIVIPHFC- 172 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKY------LNSPE 238 R + + R L + ++ + Sbjct: 173 --------------------------WHDRARPVGIRVRNLDEDKAKSFGKYIPLWYDNR 206 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC-QAGVQNVVSS 297 NLY +S +I+ EG VL + V+ Sbjct: 207 CYNHRLSLNLYGLN----------VNKKSIKNSKKVIVFEGEKSVLQMATMYKNNPSVAI 256 Query: 298 LGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRG 356 G+ + Q ++L +++ FD I + L+ Sbjct: 257 CGSNFSREQKKILIDLGIEELIIAFDRQFKVKDDEEYVIWRDKIYK---------LVQDI 307 Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETEN 392 +D + + K ++++ +N Sbjct: 308 KDVVNISVIWDKYNLLGYKDSPSDKGKTIFEKLLKN 343 >gi|40062771|gb|AAR37665.1| replicative DNA helicase [uncultured marine bacterium 439] Length = 480 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 19/173 (10%), Positives = 59/173 (34%), Gaps = 14/173 (8%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + KL E ++L L+ H ++ + + ++ + + K Sbjct: 3 IENTKLPPNSIDSEQSVLGGLLLHNDSWDRVVNIISTNDFYQASHRIIYDAIVTLLEHDK 62 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + +++ + + + + A + ++ A + R Sbjct: 63 PADILTVKEQVIKTHDEDSIGGFAYLAQIADNTPTVSNI----------ESYAKHVRELS 112 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI----SILHEVHIQIHQIESQEAMIE 639 + RQ +I ++IA+ + + + L+ + E+ Q+ + + + I+ Sbjct: 113 VYRQLIKIGREIAETAFQPKDIEVNELLDLSEKKIFEIAEQVSRNKKEITNIK 165 >gi|307152513|ref|YP_003887897.1| replicative DNA helicase [Cyanothece sp. PCC 7822] gi|306982741|gb|ADN14622.1| replicative DNA helicase [Cyanothece sp. PCC 7822] Length = 1004 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 15/191 (7%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 +S + L + E +L ++ P + L+ + ++ + Sbjct: 5 KSQISDHSLPPQNVEAEELILGGILFDPRAISRVADLLSAEVFYAQAHGDIYQAALTLHQ 64 Query: 528 EQKYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY-- 578 + K + L ++ G L + ++R V A + +R+ Sbjct: 65 QGKPTDLMTVSAYLEDQHLLEKVGGVNRLAQLIERTVSAANIDRYAAIIIDKYLRRQLIN 124 Query: 579 --QQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q + L + L EE EK+I +T K E + L ++ +++ + Sbjct: 125 AGQDIVTLGHDTTTELETVFEESEKKIFNLTQKRPQEGLVQIAQPLMNAFTEMEKMQQKL 184 Query: 636 AMIEGFGKMSG 646 + G SG Sbjct: 185 LLP---GISSG 192 >gi|332363086|gb|EGJ40873.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK355] Length = 641 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELYETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ Q + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALREETEQASPD---KPAPTNDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ EA A + L E QI Q+ + +EAM+E Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633 >gi|320546524|ref|ZP_08040839.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus equinus ATCC 9812] gi|320448909|gb|EFW89637.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus equinus ATCC 9812] Length = 639 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 20/161 (12%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + E + L + Sbjct: 472 NHLDIDSKEVLEDALIDFDGTLLFVSHDRYFINRVATKVLEISEEGSTLYLGDYDYYLEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L +L + +A D YQ A K R L+R+ EIE Q+ Sbjct: 532 KAELEELARLKAEEAQEKTTVVVEKAPAND----YQAQKANQKELRKLTRRITEIENQLE 587 Query: 604 QVTAKGEAEKTAILIS-----ILHEVHIQIHQI-ESQEAMI 638 ++ A+ E E + +++ L ++ ++ ++ E QE ++ Sbjct: 588 KIEAR-EEEISQAMLATNEASELIDLQKELDELTEQQETLM 627 >gi|229825746|ref|ZP_04451815.1| hypothetical protein GCWU000182_01109 [Abiotrophia defectiva ATCC 49176] gi|229790309|gb|EEP26423.1| hypothetical protein GCWU000182_01109 [Abiotrophia defectiva ATCC 49176] Length = 446 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 22/164 (13%), Positives = 54/164 (32%), Gaps = 12/164 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K E +++ ++I P + + L + + ++S + E K Sbjct: 8 KKTPPHSKSAEQSVIGSMILDPETVITVAEILEAEDFYDKRYGLIFSAITGLEKEGKPID 67 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 I R+ + + L ++ V + + +T N+ + + LL + Sbjct: 68 IITIENRI--KEMNQPLGAIEMNVLGELVMAVSTSVNVAHHAEIVY-------KNSLLRK 118 Query: 594 QKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + EK + + E L E+ + + + +A Sbjct: 119 LIKVAEKISLNCYAGESNLEDILQLTE--KEIFDLLQKRQVSDA 160 >gi|114762696|ref|ZP_01442130.1| HlyD family secretion protein [Pelagibaca bermudensis HTCC2601] gi|114544606|gb|EAU47612.1| HlyD family secretion protein [Roseovarius sp. HTCC2601] Length = 431 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + Q+ + +L E L L+R + A + Q+ Sbjct: 158 VKARIAQRTSDIAAVGDQLP--LIAEELAMLERSQSVTEDLRSRNLATQQQADEQMQRLD 215 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKG---EAEKTAILISILHEVHIQIHQIESQEAMIE 639 L R + L ++E + I ++ A + + A S + E Q+ ++++EA +E Sbjct: 216 GLRLRQQELRGERERATQNIEELEATLRRIDLDAVAEARSRIAEAQAQLRGLKAREAALE 275 >gi|73967058|ref|XP_868305.1| PREDICTED: similar to myosin 18A isoform b isoform 4 [Canis familiaris] Length = 2002 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 82/273 (30%), Gaps = 9/273 (3%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ VD KR + E+ + + D Q ++ Sbjct: 1370 EWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADIDESQRALQQLK 1429 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 + Q+L + +N QR S L + + + L Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHEL----EKKQRRFDSELSQAHEEAQREKLQREKLQ 1485 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 +L E + + + ++ + S E + +E + Sbjct: 1486 R--EKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQ 1543 Query: 550 LKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 L+ L+ +V+D I ++Q Q Y+ + + R+K E+E ++ ++ Sbjct: 1544 LRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELESKLTTLS 1603 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + ++ + + M++ Sbjct: 1604 EQVSQRDLESEKRLRKDLKRTKALLADAQIMLD 1636 Score = 44.5 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 31/300 (10%), Positives = 77/300 (25%), Gaps = 30/300 (10%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + ++L K++ E + + ++ + + Sbjct: 1472 EEAQREKLQREKLQREKDTLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ +L+ L K + K +L + K K+ ++ Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537 E+ L E + L L + ++ Sbjct: 1592 KRELESKLTTLSEQVSQRDLESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQL 1651 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +L E F V+ E + + + AL ++ L R+K E Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706 Query: 598 IEKQIAQVTAKGE-----------------------AEKTAILISILHEVHIQIHQIESQ 634 I+ ++ + + E+ ++ ++SQ Sbjct: 1707 IQSRLEEDQEDMNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1766 Score = 40.6 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 +E+ +E+ ++L ++ L++ + D L S EA I ++ + Sbjct: 1742 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1798 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 KR L+ + +E +++ + E E+ L L + ++ ++ +EA Sbjct: 1799 TQVKRLESLASRLKENMEKLTEERDQRTAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1858 >gi|187932546|ref|YP_001885129.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B] gi|187720699|gb|ACD21920.1| replicative DNA helicase [Clostridium botulinum B str. Eklund 17B] Length = 438 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 9/135 (6%), Positives = 43/135 (31%), Gaps = 4/135 (2%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + E ++ + +P+I E +++ + + + +++ + S F E + Sbjct: 5 QALPSSIRTEQEIIGAIFYNPSIAAEVIEKVITEDFYRTDHKLIYNAICSLFAEGEDINL 64 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + ++ + + + L + + + + +++ Sbjct: 65 TMLINKIGKEK----ISDIGGVTYLTELQLGGMPIRPNSYIKILKDKSYRRQAIKSMTKA 120 Query: 595 KEEIEKQIAQVTAKG 609 ++ + + G Sbjct: 121 ISKLHNETTKAYEIG 135 >gi|325965239|ref|YP_004243145.1| primary replicative DNA helicase [Arthrobacter phenanthrenivorans Sphe3] gi|323471326|gb|ADX75011.1| primary replicative DNA helicase [Arthrobacter phenanthrenivorans Sphe3] Length = 460 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 13/161 (8%), Positives = 45/161 (27%), Gaps = 13/161 (8%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++L ++ + + + L + + ++ + + + Sbjct: 17 ASRKPPQDIPAEQSVLGGMMLSKDAIADVVEILRGQDFYRPAHETIYEAIIDLYGRGEPA 76 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + L + + ++ L A GY + R + Sbjct: 77 DAVTVSDELTK---RAEINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA---ERAVL 126 Query: 593 RQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ 630 R+ +I Q+ + + + ++ V + Sbjct: 127 RRLVNAGTKIVQLGYGSDGEVEDLVNQAQAEVYAVAERRTA 167 >gi|229822131|ref|YP_002883657.1| ATP-dependent chaperone ClpB [Beutenbergia cavernae DSM 12333] gi|229568044|gb|ACQ81895.1| ATP-dependent chaperone ClpB [Beutenbergia cavernae DSM 12333] Length = 868 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 74/212 (34%), Gaps = 14/212 (6%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F+++I + R +++ + +++ + + K ++ ++AL+ Sbjct: 319 FREHIEKDPALERRFQQVFVGEPSVEDTIAILRGIAPRYEAHHKVTIADSALVAAATLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + + I + +L L S +E RL L++ D Sbjct: 379 RYITGRQLPDKAIDLIDESASRLRMELDSSPIEVDELQRA--VDRLTMEELA--LERADD 434 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-------AK 608 L + D R+ A ++ + + +++ ++ ++T + Sbjct: 435 PSSAERLEKLRADLA--DRREELAGLTARWEAEKAGHNRVGDLKARLDELTTAAERAMRE 492 Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMIE 639 G+ + + + + EV ++ E EA I+ Sbjct: 493 GDLARASEIRYGEIPEVERELVSAERDEAAID 524 >gi|47228073|emb|CAF97702.1| unnamed protein product [Tetraodon nigroviridis] Length = 750 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 44/119 (36%), Gaps = 1/119 (0%) Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 L +E++ ++ ++ + + ++L + A + Sbjct: 163 ALQRAEMERALERERIEKQQAIEKEEQEKARQRERELALERERQERELALVKEREEQELA 222 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 ++ +R R L RQ+ E ++++ + + + E + E+ Q ++E QE Sbjct: 223 LARERALELERKRELERQELERQRELERQELERQRELERQELERQRELERQ-RELERQE 280 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 20/233 (8%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 +++ + ++ + E + +K + + ++ + ++ + +L+ E Sbjct: 160 KSLALQRAEMERALERERIEKQQAIEKEEQEKARQRERELALERERQERELALVKEREEQ 219 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L A+ E+ +EL EL++ + Q+ +E+ ++ Sbjct: 220 EL--ALARERALELERKRELER-----QELERQRELERQELERQRELERQELERQRELER 272 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----------LYKRFRLLSRQK 595 EL +Q + R+ + + R+ +Q L +R R L +++ Sbjct: 273 QRELERQELERQRELERQKLEMQKELERQRELERQELEKAAAREAKAQEQERERALEQER 332 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHI---QIHQIESQEAMIEGFGKMS 645 E E+ + + E I + ++ +IE ++A +E G+ S Sbjct: 333 LEKERAMEAARIEKEVALERERIEKEKALKEKCLEMERIEEEKAQLERLGRES 385 >gi|300176688|emb|CBK24353.2| unnamed protein product [Blastocystis hominis] Length = 287 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 23/228 (10%), Positives = 74/228 (32%), Gaps = 14/228 (6%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + LR ++ + +L E + R + + L L Sbjct: 36 ETLRTQHAAELAQLRSEL-----AELNEELRTRISETEMKRIQSILLTLQVGLSPPFSLQ 90 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E + P + ++ + N+ L+ ++ +++ +++ + + Sbjct: 91 SVGIPVEFTA-SAELPVPDLQAVLLDKIRHLETSNSSLRSTFNEIYNKYMQSEN-DRHAL 148 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++L + E +K+++ Q+ + ++ + L + R+ +E Sbjct: 149 EEKLRDD--EEAMKRMETQIAELEQRVIGSDGATAVTGFSSNVEVILKDQRDRYKRRVDE 206 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 + + + L +++++ Q+ + + FG S Sbjct: 207 L-----EAERSRDKASLDSLYDVINQLKAQLSSEKGASRTYDRFGSTS 249 >gi|296272472|ref|YP_003655103.1| replicative DNA helicase [Arcobacter nitrofigilis DSM 7299] gi|296096646|gb|ADG92596.1| replicative DNA helicase [Arcobacter nitrofigilis DSM 7299] Length = 479 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 3/143 (2%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L +++ +P +++ L + QK+++ + E E I +R+ Sbjct: 10 ERAVLSSILFNPDEIEDVLGVLKPKDFYLPAHQKIFAVMEKLHNEDMPIDEEFIRRRVNS 69 Query: 544 RGF-GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + ++L ++ + T E V++ LA + + + + Sbjct: 70 KDVDDDILIEILSANPITNTLAYTREIKDASVKRELA-TLATTIKKVAIEDDIA-ATEAV 127 Query: 603 AQVTAKGEAEKTAILISILHEVH 625 V T + L ++H Sbjct: 128 DTVQNALYKITTDSASTELKDIH 150 >gi|159128802|gb|EDP53916.1| cell polarity protein (Tea1), putative [Aspergillus fumigatus A1163] Length = 1496 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 31/287 (10%), Positives = 81/287 (28%), Gaps = 24/287 (8%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G A+++ + + + + + R Sbjct: 1068 RIAGLEAYQEQASREGLQLRRQLQAIMKESQAHAAENRELKSKLENQQREAGALAIQHAA 1127 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + +R + + Q+L S +L R Sbjct: 1128 LKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLRELEQQLSASLKAHEELKASFETR 1187 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E +E+ ++L + + Q ++ K E + Sbjct: 1188 EQEA-------DRAYREKLEQLEN------DYQSAVHYVKGTEKMLKRMKDELTRYKAQN 1234 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEI 598 L+ R + A + A R QQ+++ ++ L Q ++ Sbjct: 1235 AKIQADLEAAQRSISQASGLGSEPPAEWESERSKLQQSISDLQQDTASSIANLESQIAKL 1294 Query: 599 EKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639 ++ ++ A+ + ++ LI+ + ++ Q++ + A++E Sbjct: 1295 KEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341 >gi|70989075|ref|XP_749387.1| cell polarity protein (Tea1) [Aspergillus fumigatus Af293] gi|66847018|gb|EAL87349.1| cell polarity protein (Tea1), putative [Aspergillus fumigatus Af293] Length = 1496 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 31/287 (10%), Positives = 81/287 (28%), Gaps = 24/287 (8%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R G A+++ + + + + + R Sbjct: 1068 RIAGLEAYQEQASREGLQLRRQLQAIMKESQAHAAENRELKSKLENQQREAGALAIQHAA 1127 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + +R + + Q+L S +L R Sbjct: 1128 LKDLLAERGVSYTDSRRSPRLESPGSRFGTPEQTRLRELEQQLSASLKAHEELKASFETR 1187 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E +E+ ++L + + Q ++ K E + Sbjct: 1188 EQEA-------DRAYREKLEQLEN------DYQSAVHYVKGTEKMLKRMKDELTRYKAQN 1234 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEI 598 L+ R + A + A R QQ+++ ++ L Q ++ Sbjct: 1235 AKIQADLEAAQRSISQASGLGSEPPAEWESERSKLQQSISDLQQDTASSIANLESQIAKL 1294 Query: 599 EKQIAQVTAKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639 ++ ++ A+ + ++ LI+ + ++ Q++ + A++E Sbjct: 1295 KEDLSAAEAEKDKSRSEYESVKQELIAAAEKNRAELEQLKQENALLE 1341 >gi|2198820|gb|AAD12485.1| Cux/CDP(1B1) [Mus musculus] Length = 1293 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 32/256 (12%), Positives = 87/256 (33%), Gaps = 22/256 (8%) Query: 404 LEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 +K+ + +A+++++++ Q ++ ++ ++ + Sbjct: 1 TLEEYNKEFAEVKN---QEVTIKALKEKIREYEQTLKSQAETIALEKEQKLQNDFAEKER 57 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLIN--HPAILQEQYQELADIRYDNNELQKLWSF 521 + KL + + L T + + + + + +E++ + + Sbjct: 58 KLQETQMSTTSKLEEAEHKLQT--LQTALEKTRTELFDLKTKYDEETTAKADEIEMIMTD 115 Query: 522 LF--SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV----------RDAGLWSATTEA 569 L + E E + ++L L ++ + A E Sbjct: 116 LERANQRAEVAQREAETLREQLSSANHSLQLASQIQKAPDVAIEVLTRSSLEVELAAKER 175 Query: 570 NIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQIAQVTAKGEA-EKTAILISILHEVHIQ 627 I + + Q+ A + R S Q ++E+Q+ + + E+ + EV + Sbjct: 176 EIAQLVEDVQRLQASLTKLRENSASQISQLEQQLNAKNSTLKQLEEKLKGQADYEEVKKE 235 Query: 628 IHQIESQE-AMIEGFG 642 ++ ++S E A EG G Sbjct: 236 LNTLKSMEFAPSEGAG 251 >gi|89094153|ref|ZP_01167096.1| replicative DNA helicase [Oceanospirillum sp. MED92] gi|89081628|gb|EAR60857.1| replicative DNA helicase [Oceanospirillum sp. MED92] Length = 464 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 10/179 (5%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + L K K+ E ++L L+ + + D + E ++++ + Sbjct: 6 ISDEDLAKIKVPPHSMEAEQSVLGGLMLDNNAWDTVSEIVVDDNFYRQEHRQIYRTMRKL 65 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L +L+ L + Y + + Sbjct: 66 VNDGNPLDVVTLSEELDRT------AELESAGGLDYLIELAKNTPSASNIRAYSEIV--- 116 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 R R L RQ +IA E + L++ + QI + + EG ++ Sbjct: 117 -RDRALLRQMISAANEIADGAFNPEGRSSEELLNSAEQKIFQIAENRPNQGGPEGVNEL 174 >gi|291562184|emb|CBL41000.1| RecA-family ATPase [butyrate-producing bacterium SS3/4] Length = 633 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 30/144 (20%) Query: 1 MNYPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 M Y ++ I + + + GQ R HD S +K Sbjct: 1 MYYTQEQID-CANQADLVSFLQGQGEQLTRAGQEYRWKR-------HD----SLTIRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVD 104 +Y S G + F+ G SF E+++ L A+ + LP + Sbjct: 49 --WYRHSQSKGGAPIDFVMEFFGKSFTEAIELLTGEKGAAQPPDRPSPASFSDFRLPPRN 106 Query: 105 PKIEKKEKIQTDLIRLIEVATDFF 128 P T R+ E + FF Sbjct: 107 PDNRIARNYLTAARRIDEDVSGFF 130 >gi|134095343|ref|YP_001100418.1| replicative DNA helicase [Herminiimonas arsenicoxydans] gi|133739246|emb|CAL62295.1| Replicative DNA helicase [Herminiimonas arsenicoxydans] Length = 461 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 67/199 (33%), Gaps = 19/199 (9%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + ++ E ++L L+ A + + + + ++ + Sbjct: 3 NRADPQVDSLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVHQDDFYRYDHRIIFQHIVR 62 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + L G E + + +A + + ANI + + L Sbjct: 63 LINGSRPADVITVFEALTNSGKAEEVGGV--SYLNALAQNTPSAANIRRYAEIVRDRGIL 120 Query: 585 YK---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQ 627 K + + + + +E E +I + +G A+ + +L +V + Sbjct: 121 RKLITVSDEISGQAFNPQGKEVKQMLDEAESKIFAIAEEGSRGAQGFQEIQPLLTQVVER 180 Query: 628 IHQIESQEAMIEGFGKMSG 646 I ++ ++++ + G +G Sbjct: 181 IDELYNRDSTSDITGVPTG 199 >gi|92113020|ref|YP_572948.1| replicative DNA helicase [Chromohalobacter salexigens DSM 3043] gi|91796110|gb|ABE58249.1| primary replicative DNA helicase [Chromohalobacter salexigens DSM 3043] Length = 462 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 K+ E ++L L+ + + L+ + E + +++ + Sbjct: 10 ETAALKVPPHSLEAEQSVLGGLMLENSAWDTVSERLSADDFYRYEHRLIFNAMAQLADAG 69 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + L R E + L A + + +A R R Sbjct: 70 HPLDVVTLSEALENRDQLESVGGLAYLAELARNTPSASNI----------RAYTDIVRER 119 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R+ + QIA + L++ + QI + Sbjct: 120 ATLRKLIQAAHQIADGAFAPQGRPADELVNEAERLVFQISE 160 >gi|159116528|ref|XP_001708485.1| Protein 21.1 [Giardia lamblia ATCC 50803] gi|157436597|gb|EDO80811.1| Protein 21.1 [Giardia lamblia ATCC 50803] Length = 681 Score = 47.6 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 71/205 (34%), Gaps = 25/205 (12%) Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 +N R + K + L +++ + +L+E L + IL+E + L+D+ Sbjct: 248 RNLRKQYNKVVRENLEMRNVMDELSTTLENLKENN--AQLTSDRDILKETNKHLSDMD-- 303 Query: 512 NNELQKLWSFLFSDFVEQKYFL-PEEIHQ------RLCERGFGELLKQLDRQVRDAGLWS 564 ++L + + E E+ + E + LD+ + ++ + S Sbjct: 304 ----RRLKQ-VINHTGEGDVVECVSELVNTMREQVKAREEDLRNVSNALDQVISESRVMS 358 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA---------EKTA 615 + D + L ++ R+ E+E ++ + E E Sbjct: 359 SEASDLKKDRARLLNDVKDLRQKLYDKEREHRELEIKLETSNREAEQLVYERQEVEETLT 418 Query: 616 ILISILHEVHIQIHQIESQEAMIEG 640 L + L + I+ A IEG Sbjct: 419 RLTNELQSAKTLLQIIKQGAASIEG 443 >gi|270160281|ref|ZP_06188936.1| conjugative transfer relaxase protein TraI [Legionella longbeachae D-4968] gi|269987203|gb|EEZ93459.1| conjugative transfer relaxase protein TraI [Legionella longbeachae D-4968] Length = 1956 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 20/189 (10%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS-FIESVQRLAAIAGVPLPVVDPKIEKK 110 S + G ++ F G+ + G S F E++Q A +P + K+ +K Sbjct: 1576 SLKIDLDSGLWHHFETGESGNLFHLIEREKGLSGFKETLQHAAQYIHY-IPEYERKVPQK 1634 Query: 111 --EKIQTDLIR-LIEVATDFFHHS--LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 EK + ++ ++A F S ++ ++ HA F + Sbjct: 1635 LNEKKKREVKEGKRQLAQKLFQQSQPIQGTIAEKYLIIHRGLAHYEHADLRFCRSVYTKT 1694 Query: 166 RYSLRE-------------HLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRS 212 + + ++ ++ A D+ ++ N + R Sbjct: 1695 QDGQKHVPALLAFSKDEQGNIHHVQITKLDPNSANKDKSCDSVKQTFGLINNYFVNLNRQ 1754 Query: 213 SRGQVIAFG 221 +G + F Sbjct: 1755 GKGDIAYFT 1763 >gi|260914152|ref|ZP_05920625.1| replicative DNA helicase DnaB [Pasteurella dagmatis ATCC 43325] gi|260631785|gb|EEX49963.1| replicative DNA helicase DnaB [Pasteurella dagmatis ATCC 43325] Length = 467 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 8/128 (6%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + R SL + + E ++L ++ HPA L + + ++ Sbjct: 3 KNTSRNTPQSLEQIVVPPHSLEAEQSVLGGILIHPAHWDSISDMLIPDDFYLAGHRVIFQ 62 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDV 574 + + + K I++ L E+ + L +L + + + + A IV Sbjct: 63 EMENLVRQGKPIDLINIYEFLREKNLSDEVGGFAYLAELSK--NTPSVSNIVSYAAIVRD 120 Query: 575 RQGYQQAL 582 R + + Sbjct: 121 RAILRDLI 128 >gi|160946185|ref|ZP_02093396.1| hypothetical protein PEPMIC_00147 [Parvimonas micra ATCC 33270] gi|158447708|gb|EDP24703.1| hypothetical protein PEPMIC_00147 [Parvimonas micra ATCC 33270] Length = 442 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 56/170 (32%), Gaps = 16/170 (9%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L +I P + +++L + + ++S + E P + ++ Sbjct: 9 AEKCVLSIMITEPNKRELVFEKLKRKDFYLGWHKDIFSAILELSRENTNVDPITVINKME 68 Query: 543 ERGFG-----------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK-RFRL 590 GF E++ + + + ++ + Sbjct: 69 AMGFDTESNNGIVGVVEIVNAVAFPSNIENYCKIVKDKSDTRNLLFILDSIKDRAYKNED 128 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + E IE QI ++ ++ ++ + + ++ ++ + + I+G Sbjct: 129 YDKVLESIEGQIFEL----SQNESRTGLTHIKDTLKEVIELLDERSKIKG 174 >gi|56205922|emb|CAI24424.1| myosin XVIIIa [Mus musculus] Length = 1998 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 33/276 (11%), Positives = 86/276 (31%), Gaps = 15/276 (5%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ VD KR + E+ + + D Q ++ Sbjct: 1366 EWRLKYERAVREVDFTKKRLQQELEDKMEVEQQSRRQLERRLGDLQADSDESQRALQQLK 1425 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + Q+L + +N + + + + KL ++ RE Sbjct: 1426 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEETQREKLQREKLQREKD 1485 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 +L L E + + + ++ + S E + +E Sbjct: 1486 ML---------LAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1536 Query: 547 GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + L+ L+ +V+D +I ++Q Q Y+ + R+K E+E +++ Sbjct: 1537 KKQLRDLEAKVKDQEEELDEQAGSIQMLEQLKQMEVQLEEEYEDKQKALREKRELESKLS 1596 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ + + ++ + + M++ Sbjct: 1597 TLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLD 1632 Score = 43.3 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 29/297 (9%), Positives = 76/297 (25%), Gaps = 34/297 (11%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY---- 422 + ++ ++ + + + + + A + + ++D + Sbjct: 1471 QREKLQREKLQREKDMLLAEAFSLKQQMEEKDLDIAGFTQKVVSLEAELQDISSQESKDE 1530 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 ++ +L+ L K + K +L + K K ++ Sbjct: 1531 ASLAKVKKQLRDLEAKVKDQEEELDEQAGSIQMLEQLKQMEVQLEEEYEDKQKALREKRE 1590 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQR 540 E+ L E + L L + ++ + Sbjct: 1591 LESKLSTLSDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQ 1650 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 L E F V+ E + + + AL ++ L R+K EI+ Sbjct: 1651 LEESEFT-----CAAAVKARKAMEVEMEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQN 1705 Query: 601 QIAQVTAKGE-----------------------AEKTAILISILHEVHIQIHQIESQ 634 ++ + + E+ ++ ++SQ Sbjct: 1706 RLEEDQEDMNELMKKHKAAVAQASRDMAQMNDLQAQIEESNKEKQELQEKLQALQSQ 1762 Score = 39.5 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 +E+ +E+ ++L ++ L++ + D L S EA I ++ + Sbjct: 1738 LQAQIEESNKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFEK 1794 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 KR L+ + +E +++ + E E+ L L + ++ ++ +EA Sbjct: 1795 TQVKRLENLASRLKETMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMSELARKEA 1854 >gi|332290607|ref|YP_004421451.1| hypothetical protein pRAM32_18 [Candidatus Rickettsia amblyommii AaR/SC] gi|330723996|gb|AEC46365.1| hypothetical protein pRAM32_18 [Candidatus Rickettsia amblyommii AaR/SC] Length = 710 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 53/390 (13%), Positives = 101/390 (25%), Gaps = 67/390 (17%) Query: 52 SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPK----- 106 S N S+G + S + F+ S +S++ +A +AG+ Sbjct: 170 SLSMNLSEGTWIRHSSGASDNIFGFVQEGASVSKRQSLEIVAELAGIRAESSSYDYRTYV 229 Query: 107 -IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + K Q L E + + + ++ + Y+ Sbjct: 230 ATSRANKEQAKLQVANEWVAAY------DKITNAESFDPNKHLKGMMQHNTLEAVYSYKD 283 Query: 166 RYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTL 225 + S+E + L + +AT + F + Sbjct: 284 AEGKLLGYVVRCVSKEDSKKQTLPVTYCYNATKQEYNWRLKGFTDKG------------- 330 Query: 226 SKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM-DVL 284 K ++ A SS I++VEG V Sbjct: 331 -------------------DKPIFGLEKA-------------VCSSKPILIVEGEKAAVS 358 Query: 285 SLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIP 344 + +VVS +G + ++ +++ D D PG +AA D Sbjct: 359 AAKILPDYDVVSWMGGSNAADKVNWNQLEWCDVIIWPDNDQPGFKAAGIIKD------KI 412 Query: 345 GNRVNFVLLSRGEDPDSFIRCYGKTA---FEKLIVESLPLVDMLWKRETENRSFNTPDER 401 + + DP EK + M + E Sbjct: 413 NKANDHIGFVSVVDPTKLQFNGSIHKDLLPEKWDLADRLPDSMTIENIKEAIENVRSAHL 472 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 +I K + + SQ + +R Sbjct: 473 DLNQIQSVIQGMTHKAPQEVSHVSQQLLER 502 >gi|317402868|gb|EFV83410.1| DnaB protein [Achromobacter xylosoxidans C54] Length = 460 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 26/199 (13%), Positives = 64/199 (32%), Gaps = 21/199 (10%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 S L ++ E ++L L+ A L + + ++ + +W + Sbjct: 4 PADSQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + +H+ L G E L L T A + + A+ Sbjct: 64 IGLARPADVITVHESLVSAGKAEDAGGLAYLN---ALAHNTPSAANIRRYGEIVRERAML 120 Query: 586 KRFRLLSRQK---------EEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQ 627 ++ ++ + +E + + + +K A + +L +V + Sbjct: 121 RKLVSIADEISSAAMNPQGKEARQLLDEAESKVFQIAQEGARGAAGFQEIQPLLTQVVER 180 Query: 628 IHQIESQEAMIEGFGKMSG 646 I ++ +E+ + G +G Sbjct: 181 IDELYHRESTSDVTGVPTG 199 >gi|302834834|ref|XP_002948979.1| hypothetical protein VOLCADRAFT_89403 [Volvox carteri f. nagariensis] gi|300265724|gb|EFJ49914.1| hypothetical protein VOLCADRAFT_89403 [Volvox carteri f. nagariensis] Length = 2628 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 28/232 (12%), Positives = 72/232 (31%), Gaps = 19/232 (8%) Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + ++ ++ +L +K + R+ + R + + L +S + Sbjct: 751 EAKSLADTMQAQVNELREKLAAATAESARHAGRADDWRQRCTAMESLRESEMAMRNALAA 810 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF-------LFSDFVEQKYF 532 + LL T + + Q +EL E Q + D Sbjct: 811 EKAQLTTLLATAQHKAEVAQRGLEELQSQVRSRTEHQVVLEARMSAQTTALEDARSALAM 870 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL- 591 E ++ L + E L+ A + E ++ + ++R + L Sbjct: 871 AEAERNRALADAKVAEQLR--ANSEATAAMRERELERRTANLESDLARLRGDHERQQTLF 928 Query: 592 -------SRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 + Q E+ ++ + + + + E+ +I ++++Q Sbjct: 929 HHSVEAATAQLREVREEANDMRRARDEAERSLEEARGQVSELRGRIVELQAQ 980 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 27/288 (9%), Positives = 74/288 (25%), Gaps = 17/288 (5%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + + +++ S + + + + Sbjct: 743 EELSQTRQEAKSLADTMQAQVNELREKLAAATAESARHAGRADDWRQRCTAMESLRESEM 802 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGY--GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 A+ QL T + + + + + +++ + + + + Sbjct: 803 ---AMRNALAAEKAQLTTLLATAQHKAEVAQRGLEELQSQVRSRTEHQVVLEARMSAQTT 859 Query: 478 KKPSLREAALLLTLINHPAILQ-EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 R A + + A+ + ++L ++ + Sbjct: 860 ALEDARSALAMAEAERNRALADAKVAEQLRA---NSEATAAMRERELERRTANLESDLAR 916 Query: 537 IH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + Q L QL +A + + + Q L R Sbjct: 917 LRGDHERQQTLFHHSVEAATAQLREVREEANDMRRARDEAERSLEEARGQVSELRGRIVE 976 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIESQEA 636 L Q E+ Q+A G + L+ L + Q+ + +++ A Sbjct: 977 LQAQVSELNSQLAAARGVGGGAAVSDLVEGQKLRDAEAQLRETQAELA 1024 >gi|289614420|emb|CBI58814.1| putative MEI5 protein [Sordaria macrospora] Length = 880 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 54/148 (36%), Gaps = 8/148 (5%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQ- 552 ++ + + + ++ N L + ++ + ++ +RL + G ++++ Sbjct: 94 KLVADVFGQFIMLKEKNERLSISHREVLDEYHRYRS-ELDDWKKRLEKEKEGLEDVIQSK 152 Query: 553 ----LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L + A L ++ L + R+ +E+ K + A Sbjct: 153 VQEVLQLHAQRASLQGNLEDSAKRAAAAVENGERELMRLKEEKERELQELRKDKERELAA 212 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + +K L+++ + ++ ++ +A Sbjct: 213 LKEDKEKELVALKEDKEQELTKLREDQA 240 >gi|253582125|ref|ZP_04859349.1| replicative DNA helicase [Fusobacterium varium ATCC 27725] gi|251836474|gb|EES65011.1| replicative DNA helicase [Fusobacterium varium ATCC 27725] Length = 446 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 14/144 (9%), Positives = 49/144 (34%), Gaps = 10/144 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + E ++L + + + + L+ + N + ++ + + + Sbjct: 2 PEIENLRKIPSDLEAERSVLGGIFLKQDVFGDIIEILSPDDFYKNAHKIIYETMREIYNK 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 + P + RL + ++ + + + E Y + + + Sbjct: 62 GEVLDPLVVMNRLRKN------EKFEEVGGEQIFYDIVEEVPTAANITAYAKIV----KE 111 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAE 612 + + R+ ++ +I ++T G E Sbjct: 112 KAILRRLGDVGTKIVEMTYSGYEE 135 >gi|321156804|emb|CBW38788.1| putative uncharacterized protein [Streptococcus pneumoniae] Length = 361 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 28/122 (22%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + FS ++GD + F+ + G SF +++ L+ + ++++ + L Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLN 100 Query: 122 EV 123 + Sbjct: 101 RI 102 >gi|319412027|emb|CBY91960.1| hypothetical protein [Streptococcus pneumoniae] Length = 361 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 28/122 (22%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSTTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 + FS ++GD + F+ + G SF +++ L+ + ++++ + L Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGISFKKALAFLSE------EPFQKEAVQEKRERPFYYPLN 100 Query: 122 EV 123 + Sbjct: 101 RI 102 >gi|317126691|ref|YP_004100803.1| replicative DNA helicase [Intrasporangium calvum DSM 43043] gi|315590779|gb|ADU50076.1| replicative DNA helicase [Intrasporangium calvum DSM 43043] Length = 609 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 20/195 (10%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + +L + E ++L ++ + + ++L + + ++ + Sbjct: 12 ATKAREGGPPDDRLPPQDVGAEQSVLGGMLLSKDAIADCVEQLKGTDFYRPAHELIYDAV 71 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + + L +RG L ++ Q L ++ A Y Q + Sbjct: 72 LDLYGRGEPADAITVADELTKRGD---LTRVGGQAYLHQLIASVPTAA---NAGYYAQIV 125 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ---VTAKGE-AEKTAILISILHEVHIQIHQIES----- 633 A R + R+ E +I Q G+ + + ++ V + + Sbjct: 126 A----ERAVLRRLVEAGTRIVQLGYAQGGGDVEDIVNAAQAEVYSVADRRGGEDYHAIGD 181 Query: 634 -QEAMIEGFGKMSGR 647 EA ++ SGR Sbjct: 182 ILEATVDEIEVASGR 196 >gi|269792269|ref|YP_003317173.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099904|gb|ACZ18891.1| replicative DNA helicase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 447 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 14/149 (9%), Positives = 49/149 (32%), Gaps = 10/149 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S + ++ E + L + + + L+ + + + + ++ + + Sbjct: 2 SEVTFDRVPPHNLEAERSALGACLLDREAMLAVTELLSPLDFYDQRHRLIFELIQDMARK 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 K +G + ++ + +A ++ Y + + Sbjct: 62 DKVVDALTFLDEAQNKG-------MLERMGGSAFVAALADSVTTTANAEYHARI---VKD 111 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + + R+ ++ IA++ + + K IL Sbjct: 112 KAIHRRLIQVGGDIARLGYQEDRPKEEIL 140 >gi|257057884|ref|YP_003135716.1| primary replicative DNA helicase [Saccharomonospora viridis DSM 43017] gi|256587756|gb|ACU98889.1| primary replicative DNA helicase [Saccharomonospora viridis DSM 43017] Length = 459 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 25/71 (35%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + + E ++L ++ + + + L + Q ++ + + + P Sbjct: 20 RQPPQDTAAEQSVLGGMLLSKDAIADVVEVLRPGDFYRPAHQAIYDCILDLYGRGEPADP 79 Query: 535 EEIHQRLCERG 545 + L RG Sbjct: 80 ITVSAELERRG 90 >gi|119484327|ref|ZP_01618944.1| replicative DNA helicase [Lyngbya sp. PCC 8106] gi|119457801|gb|EAW38924.1| replicative DNA helicase [Lyngbya sp. PCC 8106] Length = 638 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 56/180 (31%), Gaps = 16/180 (8%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L +LS + E A+L ++ P + + L + Q ++ Sbjct: 2 KNRSNFQLPSDRLSPQNIEAEEAILGGILLDPEAISRVAELLDPSCFAIQAHQAIYRTTL 61 Query: 524 SDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD 573 + ++ K + L + +L+ + V E + Sbjct: 62 NLHLQGKPTDLMTVTTWLADHDQLEKVGGQMKLAQLVDRTVSAVNIDQYALLVIEKAMRR 121 Query: 574 -VRQGYQQALAL-YKRFRLLSRQKEEIEKQIAQVTAKGEAEKT----AILISILHEVHIQ 627 + Q + + L Y + ++ E+QI +T + LI+ ++ + Sbjct: 122 NLIQAGHETINLGYDTAVDIEEVLDQAEQQIFNITQVRPQQNLVSIAETLINTFQDIEDR 181 >gi|15639052|ref|NP_218498.1| replicative DNA helicase (dnaB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025292|ref|YP_001933064.1| replicative DNA helicase DnaB [Treponema pallidum subsp. pallidum SS14] gi|6014984|sp|O83097|DNAB_TREPA RecName: Full=Replicative DNA helicase gi|3322317|gb|AAC65054.1| replicative DNA helicase (dnaB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017867|gb|ACD70485.1| replicative DNA helicase DnaB [Treponema pallidum subsp. pallidum SS14] gi|291059474|gb|ADD72209.1| replicative DNA helicase [Treponema pallidum subsp. pallidum str. Chicago] Length = 438 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 3/130 (2%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + +KGK+ E A+L ++ + L ++L+ + + Q+++ L Sbjct: 5 PNPTQELKGKIPPHNLEAERAVLGAVLLDDSALSTATEQLSASSFYSAAHQRIFQALVEL 64 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L E L + A L A A V+ A+ Sbjct: 65 SDLGQRPDILVLSEHLRSC---EALDFVGGSAYVASLTDAVPSAANVEYYTRIVCDAAMR 121 Query: 586 KRFRLLSRQK 595 + ++R Sbjct: 122 RSLLKVARII 131 >gi|293400281|ref|ZP_06644427.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306681|gb|EFE47924.1| replicative DNA helicase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 448 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 12/162 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E A+L ++ +P++ Y + L + + Q+++S + K Sbjct: 2 SRELPHSNEAEQAILGGMMVYPSVSGVVYDQGLEPSDFYLDIHQRIFSAMMDITNSGKPV 61 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + RL + ++QL V A ++ I Y + + K L Sbjct: 62 DVTTLIARLQD------IEQL-HLVGGADYIIKLSDTAISAANSMY--YIEIIKSRAHLR 112 Query: 593 RQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632 R E ++ + TA + + V + Sbjct: 113 RLIETAQEIAEEGFDTASSLDDIMDKAERDILNVTRDRKATD 154 >gi|225075190|ref|ZP_03718389.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens NRL30031/H210] gi|224953365|gb|EEG34574.1| hypothetical protein NEIFLAOT_00190 [Neisseria flavescens NRL30031/H210] Length = 471 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L + E ++L L+ + ++ + +E + ++ + + Sbjct: 11 PPEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + + + L ++L+ L + + Y + + Sbjct: 71 LINESRPADVITVQESLERN------EELEVAGGFNYLITLAQNTPSAANIRRYAEIV-- 122 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175 >gi|167751166|ref|ZP_02423293.1| hypothetical protein EUBSIR_02152 [Eubacterium siraeum DSM 15702] gi|167655881|gb|EDS00011.1| hypothetical protein EUBSIR_02152 [Eubacterium siraeum DSM 15702] Length = 399 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 53/399 (13%), Positives = 106/399 (26%), Gaps = 49/399 (12%) Query: 5 RDFIKDLLIHIPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ I+ + + + + + C HD S + + + Sbjct: 14 KEQIERARN-VDMVEFLERTEGFSVKKSGNGYR-------CDVHD----SLFITNDRKGW 61 Query: 63 YCFSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 Y S G+ ++F + G SF E+V+ L + PK K+K + I Sbjct: 62 YWNSRDEGGNNAIAFCMKIYGQSFTEAVKSLCGDIQME---YSPKYNTKKKSSEEKIEAH 118 Query: 122 EVA--TDFFHHSLKNARDKRLHYYLDERGIDSHAIEM---------------FKLGYAPD 164 + + + + Y RG++ + + +L Sbjct: 119 RLILPEQDHKENGQRNYSNVIAYLCKTRGLEYNIVNQLIYDRKLYQGIGYSGLQLVGYDS 178 Query: 165 SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 S + + + L + P RG + Sbjct: 179 SNTPFYRFKNDIPTNAPEYVTIELQAQKQKGEKYICEGFSGEHIPELIERGITKKYVNMI 238 Query: 225 LSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVL 284 G+ + + + Y K + + + + + E +D+L Sbjct: 239 AVNGDGIMSRYAFCRSVSDSST--YRVDL--PGSDKKYSFSLLGTNKNKLYVFESVIDML 294 Query: 285 SL---------CQAGVQNVVSSLGTALTEYQLRLLWKLSP-RIVLCFDGDDPGLRAAYKA 334 S A Q + SLG L I C D DD G A + Sbjct: 295 SYASFYAINNGQDAWQQLTMLSLGGKSDVALDEFLKNKPIAEITFCLDNDDAGKHATEQL 354 Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D ++ + +D +F K + Sbjct: 355 SDKYALKGYAVSKDIPLNKDFNDDLKAFRALNEKNTVQA 393 >gi|56419728|ref|YP_147046.1| chromosome segregation ATPase [Geobacillus kaustophilus HTA426] gi|56379570|dbj|BAD75478.1| chromosome segregation ATPase (SMC) [Geobacillus kaustophilus HTA426] Length = 1187 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + E + +L E E + +L+R V A EA +++ +R + Sbjct: 675 RNRELETLSAKLQE--MDETIARLERAVAAKRHELAEQEAQADALQEEVAALREALQRQK 732 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R+ E +K+I + A + EK + E++ ++ I+ Q Sbjct: 733 DEQRELEWQKKRIDERLALYDEEKANHE-REMAELNRRLGAIDRQ 776 Score = 38.7 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 37/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + L E + L + I D R Sbjct: 740 WQKKRIDERLALYDEEKANHEREMAEL-----NRRLGAIDRQLEQLAEKLQAIDDDISRL 794 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + ++ Q ITE K+ +H +K + ++G + Sbjct: 795 QAQKQTEQTTKEALQAAITEQKIALAETKERVKHARRKVEEWEAELAETIRGLKEAE--- 851 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 RE A L + P +E+ ++L + ++ + + L L + EQ+ + + L Sbjct: 852 RERAALDAEMEAPEWNEEEIEQLRKQKLEDKQ-KTL--ELIASRREQR-LDFQRRLEHLE 907 Query: 543 ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----------FR 589 + KQL V+D + + + ++ ++ L Sbjct: 908 QEWKETKRQHKQLADVVKDEEVKLNRLDVELENLLVRLREEYGLSFEAARSAYPLEIGAD 967 Query: 590 LLSRQKEEIEKQIAQVTAKG-----EAEKTAILISILHEVHIQIHQIESQ 634 ++ + I++ + ++ E E+ + L E + + ++ Sbjct: 968 EARKRVKLIKRAMEELGTVNLGAIDEYERVSERHRFLSEQKTDLEEAKAT 1017 >gi|299541792|ref|ZP_07052115.1| replicative DNA helicase [Lysinibacillus fusiformis ZC1] gi|298725530|gb|EFI66171.1| replicative DNA helicase [Lysinibacillus fusiformis ZC1] Length = 453 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S + ++ E +++ + P L + L + N +K++ + + Sbjct: 2 SEPMMDRVPPHNREAEQSVIGAIFLEPQALITASEILLADDFYLNAHKKIFETMLRLSDQ 61 Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 K + + L + EL + A E ++ Sbjct: 62 GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121 Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + Y R + E EK++ +V + A + +L E I Q++SQ+ Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181 Query: 637 MIEG 640 + G Sbjct: 182 EVTG 185 >gi|73950719|ref|XP_848596.1| PREDICTED: similar to ciliary rootlet coiled-coil, rootletin [Canis familiaris] Length = 797 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 34/329 (10%), Positives = 89/329 (27%), Gaps = 9/329 (2%) Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKT 369 + ++ +G L ++++ L G +D S R + Sbjct: 418 KRRLKEVLDASEGRTIKLELQRRSLEGELQRSRLGLSDREAQAQALQDRVASLQRQVADS 477 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ + E D+ L L + + + + Q Sbjct: 478 EVKAGTLQLTVERLSGALVKVEESEGLLRDKVQGLTEALAQNSASLTSSQDKNLHLQKAL 537 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 + Q + + + G + M+ L +L + + + L Sbjct: 538 TACEHDRQVLQERLEAARQALSEARKQSSSLGEQVQTMRGELADLELQRAEAEGQLQQLQ 597 Query: 490 TLINHPA-----ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 ++ L + + R L L L E++ + Sbjct: 598 EVLRQRQEGEAAALHTVQKLRDERRLLQERLDSLQGALAQREAEKREVERSALRLEKDRV 657 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 +L +++R+ + + A + + A RQ + +E Q+ Sbjct: 658 ALKRMLDKVEREKLRSHEDTVRLNAERGRLDRTLTGA---ELELAEAQRQIQLLEAQVVA 714 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIES 633 + + E+ ++ ++ S Sbjct: 715 LEQDQSPGRLEADEQRQLELQQEVERLRS 743 >gi|167524847|ref|XP_001746759.1| hypothetical protein [Monosiga brevicollis MX1] gi|163775029|gb|EDQ88655.1| predicted protein [Monosiga brevicollis MX1] Length = 1045 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 88/291 (30%), Gaps = 12/291 (4%) Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IK 416 D + LI E +D + R + A+L H + ++ I+ Sbjct: 77 DDAESQIHTMSEQYRHLIEEKQAEIDTYKTVAEQMRQEHASTALADLAQHSQYKVDEDIR 136 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + R + + Q+ + + + R Q+ + QS V + Sbjct: 137 EWRTRVEDLEEQLRLVGDQHQEDMVQLQQQHASQLAQMKSRLQEFETNSAKQSPSVSNRD 196 Query: 477 SKK----PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + L + ++ + + KL + E Sbjct: 197 GDRATQDVHSDQVDALRLELEAERERGQRLDQ--QLTLMKGANHKLREQIAEVEDELATA 254 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLL 591 L + +L V + ++ I + +Q ++ R L Sbjct: 255 LEAGAANT-KTKDSDHAHAELQATVDALHMELQASQQKISQLSATLKQDTLRHQSTEREL 313 Query: 592 SRQKEEIE---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + +E+E +A+ T L + L + Q+ +++ Q A++E Sbjct: 314 RARLQELELNGSDSQTQAGSTDADVTQQLQTRLADAEQQLAEMDEQLAVVE 364 >gi|168029891|ref|XP_001767458.1| predicted protein [Physcomitrella patens subsp. patens] gi|162681354|gb|EDQ67782.1| predicted protein [Physcomitrella patens subsp. patens] Length = 2578 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 26/231 (11%) Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + Q ++ L ++ K N + Q ++ + + K + Sbjct: 607 EAFRQETSQKVNDLQEEKAKLMQDVAELEKLNEETEQEISMKQSAWEAQVGVLESEKSEA 666 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 + ++ L + +E + N +Q+L + E +L Sbjct: 667 VSKSEDLEQRLQ--VFREEIKNLMEKEEKSNQLIQELRKEILRLRSE---------IDKL 715 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-----E 596 E + ++L+ W + D L K R R + Sbjct: 716 EEVKERQEGERLELAAELQAAWDQI--QAVRDSEATLTTELRDLKDQRNEERLITDGLVQ 773 Query: 597 EIEKQIAQVTAKGEAE--KTAILISILHEVHIQIH------QIESQEAMIE 639 E+ +Q+ ++ K K L L E+ + ++ ++ AM+E Sbjct: 774 ELRRQLLELEEKKSEAATKVEELSKQLKELRKEQELQDENERLTAEIAMLE 824 >gi|119387174|ref|YP_918229.1| replicative DNA helicase [Paracoccus denitrificans PD1222] gi|119377769|gb|ABL72533.1| replicative DNA helicase [Paracoccus denitrificans PD1222] Length = 499 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 45/150 (30%), Gaps = 14/150 (9%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E LL L+ + + + + + + ++++ P I + Sbjct: 30 AEQQLLGALLTNNEVYDHVSRIIQARHFYDPVHRRIYEICAERIARNALASPVTIKAFME 89 Query: 543 -ERGFGEL-----LKQLDRQVRDAGLWSATTEANIVDVRQGYQ----QALALYKRFRLL- 591 + G EL L +L + + + Q +A + Sbjct: 90 HDAGLKELGGPAYLARLAGAAISSHAARDYAQMIREFALRRELIGLGQDIAARASTVSVS 149 Query: 592 ---SRQKEEIEKQIAQVTAKGEAEKTAILI 618 Q +E E+ + ++ +G AE+ Sbjct: 150 DSAEEQIKEAEQVLYKLGEQGVAERGFQSF 179 >gi|150008751|ref|YP_001303494.1| DNA primase [Parabacteroides distasonis ATCC 8503] gi|149937175|gb|ABR43872.1| DNA primase [Parabacteroides distasonis ATCC 8503] Length = 323 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+D+ I +++ + Y ++ N W P +E SF N +Y Sbjct: 2 TIQDVKQ-IKLADYLQSLGYTPVKQQGKNL-----WYKSPLREETDASFKVNTELEKWYD 55 Query: 65 FSCHVKGDH 73 F G+ Sbjct: 56 FGIGKGGNI 64 >gi|295133074|ref|YP_003583750.1| chaperone ClpB [Zunongwangia profunda SM-A87] gi|294981089|gb|ADF51554.1| chaperone ClpB [Zunongwangia profunda SM-A87] Length = 868 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 69/200 (34%), Gaps = 3/200 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++K + +++ K + K +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQKVMVEEPDTESAISILRGIKDKYEQHHKVRIKDEAIIAAVELSQ 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + ++ I + KL + S E + + + + Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEIEAIKREKDEAKL 436 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + A L + E N ++ ++ + + + EE + + + +G+ K A Sbjct: 437 KSLRADLANLKEERN--EIHAQWKNEKEVVDNIQGAKAEIEEYKLEAERAEREGDYGKVA 494 Query: 616 IL-ISILHEVHIQIHQIESQ 634 L + E ++ +++ + Sbjct: 495 ELRYGKIKEAQEKLERLQKE 514 >gi|254444598|ref|ZP_05058074.1| replicative DNA helicase [Verrucomicrobiae bacterium DG1235] gi|198258906|gb|EDY83214.1| replicative DNA helicase [Verrucomicrobiae bacterium DG1235] Length = 469 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 38/213 (17%), Positives = 73/213 (34%), Gaps = 28/213 (13%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSL-REAALLLTLINHPA--ILQEQYQELADIR 509 N + +++ S + L+ SL E LL + PA I + +L Sbjct: 3 NKPFSGSRSSDKKISPSPISLAGLAPPHSLEAEKGLLAACLLDPAEIISRCLASKLPQEA 62 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + Q ++ F + + + + L G E + L T A Sbjct: 63 FYHPAHQVVYQTCCDLFENKSMLDAQVLAEELRSLGKLEEVGGLVYVADLTSHIETTAHA 122 Query: 570 N--IVDVRQGYQQALALYKRFRLLSR-----------QKEEIEKQIAQVTAKGEAEKT-- 614 N + VR+ Y + + R + R +EIEK+I ++ A+ + Sbjct: 123 NYFLDKVREHYTKRRLIASASRSIERCYTADDSGIESLVDEIEKEIYAISDAQVADTSHP 182 Query: 615 -AILISILHEVHIQIHQIESQEAMIEGFGKMSG 646 + + + M+EG G++SG Sbjct: 183 IRESVGEAVSLIKK---------MLEGRGELSG 206 >gi|149209961|ref|XP_001522355.1| hypothetical protein MGCH7_ch7g462 [Magnaporthe oryzae 70-15] gi|86196417|gb|EAQ71055.1| hypothetical protein MGCH7_ch7g462 [Magnaporthe oryzae 70-15] Length = 2412 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 14/315 (4%) Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + +++ + V R D + ++ A ++ + Sbjct: 1669 AAEFQRNLEMAETKIEVEIMNRSVYDQRVHDLEERLKHQEVKAEQEASARRTAEDRLAEN 1728 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + S E + I I++ K + RL L Sbjct: 1729 QRLLRISSEEETRLREALEEKEQKIKSIEESKGKTTM------RLALLEASQTNNQQSQA 1782 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 K + +++ ++ + + + ++ + L + L++ L Sbjct: 1783 DIQNKMNATETELREARQDARTWKAEAERVNNIARQQGSDLAQVNEQNKHLKKIIDTLGT 1842 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQ---LDRQVRDAGL 562 +N +++ W F +I + + ELL + LD +++ Sbjct: 1843 QLEENERIRETWRGKFVSLQNDMTDAAAKITEESAHRIKKEQELLARQEVLDAKLQAEAR 1902 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILIS 619 E+ + + G +Q + + L E++ Q+ Q + + + E S Sbjct: 1903 TRERLESELERLEAGERQGIRAVNECKRLDTLLAELKTENHQLQQSSMRYQIEFQEARDS 1962 Query: 620 ILHEVHIQIHQIESQ 634 EV ++SQ Sbjct: 1963 AAREVQRTRDAMQSQ 1977 >gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janthinobacterium sp. Marseille] gi|151279923|gb|ABR88333.1| replicative DNA helicase [Janthinobacterium sp. Marseille] Length = 461 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 24/198 (12%), Positives = 67/198 (33%), Gaps = 19/198 (9%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L ++ E ++L L+ A + + + + ++ + Sbjct: 4 RADPQLESLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVNHDDFYRYDHRIIFQHIVKL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + + L G E + + +A + + ANI + + L Sbjct: 64 INNARPADVITVFEALTNSGKAEEVGGVA--YLNALAQNTPSAANIRRYAEIVRDRGVLR 121 Query: 586 K---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQI 628 K + + + + +E E +I + +G A+ + +L +V +I Sbjct: 122 KLITVSDEISGNAFNPQGKEVKQMLDEAESKIFAIAEEGARGAQGFQEIQPLLTQVVERI 181 Query: 629 HQIESQEAMIEGFGKMSG 646 ++ ++++ + G +G Sbjct: 182 DELYNRDSTSDITGVPTG 199 >gi|73957802|ref|XP_546939.2| PREDICTED: similar to CCAAT displacement protein isoform a [Canis familiaris] Length = 1411 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 102/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 222 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 281 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 282 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 339 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + +I +E++ + + L + E E + ++L L Sbjct: 340 RTELFDLKTKYDEEITAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 399 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 400 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 459 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 460 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGTG 505 >gi|56416960|ref|YP_154034.1| replicative DNA helicase [Anaplasma marginale str. St. Maries] gi|56388192|gb|AAV86779.1| replicative DNA helicase [Anaplasma marginale str. St. Maries] Length = 491 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 21/187 (11%), Positives = 61/187 (32%), Gaps = 15/187 (8%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S+L E L+ ++ I ++ + + +++ + Sbjct: 13 STLGAIGGLPSNIEAEQMLIGAMLRDNRICDALEDIISADVFFDPLHGRIFDQVLKINRR 72 Query: 529 QKYFLPEEIH------QRLCERGFGELLKQLDRQVRD----AGLWSATTEANIVDVRQGY 578 + + L E G E L ++ + + +A++ + Sbjct: 73 GLAANEISLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQVVFDAHLRRCLIAF 132 Query: 579 QQAL----ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQIES 633 + Y +Q E+ +++ + ++G++++ S+L E V +I + Sbjct: 133 GNDVVGNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKSDRNYHKFSVLVEDVRKKIEAAKG 192 Query: 634 QEAMIEG 640 ++G Sbjct: 193 GANALQG 199 >gi|332703043|ref|ZP_08423131.1| hypothetical protein Desaf_1907 [Desulfovibrio africanus str. Walvis Bay] gi|332553192|gb|EGJ50236.1| hypothetical protein Desaf_1907 [Desulfovibrio africanus str. Walvis Bay] Length = 477 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 101/357 (28%), Gaps = 43/357 (12%) Query: 41 ACCPFHDEKT--PSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 A CPFH E+T +F + + C SC GD L + + G + GV Sbjct: 40 AFCPFHAERTEGGAFFYDFEEDHCMCHSCGEHGDLLHIYNRIHGRD-GD------DKDGV 92 Query: 99 ----PLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154 D + ++E + A+ + + ER Sbjct: 93 REFKECYAPDAESPRREHRRE------AKASAPARRDYRPTEKGDVPDVWAERANSFIEH 146 Query: 155 EMFKLGYAPD------SRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 +L +P+ RY + E + + + D++R Sbjct: 147 SRERLRESPEIFAEQLGRYGITEEVADLSRLGWNERFKQVPVTRWGLPYEDDQYRPGKER 206 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRR 268 IR G VI + R+ + + + E + Y SI Sbjct: 207 MIRLYHGLVIPYYLRSRAVKVKFRRADPGEGARYMPA---YG--------GMSIMSVYGN 255 Query: 269 NSSSFIILVEGYMDVLSLCQAGVQNVV---SSLGTALTEYQLRLLWKLSPRIVLCFDGDD 325 + ++VE D + QAG + + S+ + + G+ Sbjct: 256 PAWKLWLVVETERDGVLGWQAGRKFQIGFVSTCSASWRPDPRTHGILGEAEFI----GNA 311 Query: 326 PGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLV 382 A P V G+D + G+ + I+ +LP Sbjct: 312 LDTDQAGAKNRFFWQETYPQQVRTPVPAKYGKDLGDLGKAGGEHLVREFILSALPSH 368 >gi|302849310|ref|XP_002956185.1| hypothetical protein VOLCADRAFT_119310 [Volvox carteri f. nagariensis] gi|300258488|gb|EFJ42724.1| hypothetical protein VOLCADRAFT_119310 [Volvox carteri f. nagariensis] Length = 2956 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 85/278 (30%), Gaps = 17/278 (6%) Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 + + V +L + + + + E+E + + LR Sbjct: 349 HGKEEEHDSQRVAALQQQVSELQAKLAEYRSYLEENQEEIERMQVTELQALA---LRAQ- 404 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q +R ++ +++ + ++ + SQ + + ++++ S Sbjct: 405 -QQAAEREAEVVRQHEATLDTLRQQLEQRKDAELAELASQHAAAMAEAQSRVAELISQHS 463 Query: 485 AALLLTLINHPAILQEQYQELADIR-----YDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L + + + L ++ Q L V + E+ Q Sbjct: 464 RQLADLEAQSARMASQHVETLGELHAQLAKLTGQHAQALAER--EAAVTKLQQREAELQQ 521 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + E L+ + A +A + + + +A L + +IE Sbjct: 522 HHTDALAKEKLRLAEALTAQAVELAARHAEERREAEERWGVEVAAK-----LQELQAQIE 576 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 ++ + +AE L E Q+ ++ +++A Sbjct: 577 QRFREQQTTRDAEARRKHAERLAEQVAQLARLHAEQAA 614 >gi|186683111|ref|YP_001866307.1| replicative DNA helicase [Nostoc punctiforme PCC 73102] gi|186465563|gb|ACC81364.1| replicative DNA helicase [Nostoc punctiforme PCC 73102] Length = 876 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 10/139 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E A+L ++ P + L + + + ++ + K Sbjct: 14 RLPPQNIEAEEAILGGILLDPEAISRVSDRLLPEAFYISAHKDIYQAAVRLHTQGKPTDL 73 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L + E+L ++ + + A L T A +D G + L RQ Sbjct: 74 LSVTSWLTDH---EMLTRIGGRNKLATLVDRTVSAVNIDALAGLVME-------KYLRRQ 123 Query: 595 KEEIEKQIAQVTAKGEAEK 613 + +I + + E E Sbjct: 124 LIKAGNEIVHLGYETETEL 142 >gi|327458637|gb|EGF04985.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1057] Length = 641 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ Q A + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALREETEQASPDKPVPAN---DYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639 ++ + + L E QI Q+ + +EAM+E Sbjct: 599 RLQEAM---QATNDAAELMESQQQIDQLTADQEEAMLE 633 >gi|319744468|gb|EFV96825.1| hypothetical protein HMPREF9171_1673 [Streptococcus agalactiae ATCC 13813] Length = 362 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 22/91 (24%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I+ + I ++ + + P HD SF Sbjct: 4 IEKVKQKA-ILDVAES-----------LGYSFKRLSGQVYEHPEHD----SFRIFADTNT 47 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 + FS ++GD + F+ ++G SF E++ L Sbjct: 48 FKWFSRDIQGDVIDFVQLVIGVSFKEALCYL 78 >gi|195046790|ref|XP_001992219.1| GH24633 [Drosophila grimshawi] gi|193893060|gb|EDV91926.1| GH24633 [Drosophila grimshawi] Length = 987 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 66/260 (25%), Gaps = 13/260 (5%) Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + + +++ + L+ + + D + + +Q +RL + Sbjct: 247 DWDKQSSSSEISVACLQDKIIQMEETHYSTNEELQATLQELADLQTQLSDTQTENERLSE 306 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 ++ + RE LL Sbjct: 307 EKDVLFQSLCRQTEKLNESRTQISTLQELLLRDTKQPAAAAAEVITTEREKKLL------ 360 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++Q +E EL L + E+ QR QLD Sbjct: 361 -DLIQTSQEEREVFMLKQEELNA---ELAELRQSRDAVQLEQQRQRERNALLD---SQLD 413 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + A ++ Q + L + EE+E +A+ ++ Sbjct: 414 AANAERKQIDAQLAVAKEEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVL 473 Query: 615 AILISILHEVHIQIHQIESQ 634 + ++ +++ Q Sbjct: 474 DASRREKDALEERLAELQDQ 493 >gi|15193244|gb|AAK91740.1|AF400249_1 axoneme-associated protein GASP-180 [Giardia intestinalis] Length = 1627 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 44/307 (14%), Positives = 111/307 (36%), Gaps = 30/307 (9%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-RYYYSQAI 428 AFE + ++D R E + A L+ + ++ L + +A+ Sbjct: 401 AFEDELAGLRSMLDERDARIAELEQAAASQDEAYATQILEEEVESLRQALLAKDGELEAL 460 Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL- 487 + RL++ + KN+ + R + + K+ + EA + Sbjct: 461 QSRLEETLARGGEAADFDAIIAAKNSEIARLQDLVMRAESAQRSSAEGDKRVAQLEAQIA 520 Query: 488 -LLTLINH-----PAILQEQYQELADIRYD-----------NNELQKLWSFLFS------ 524 L L+ ++E +++AD++++ ++E++ L + Sbjct: 521 GLERLLADAQGGDDERVKELNEQIADLQFELANAKQDIDERDDEIELLRDRIQEEMKNSA 580 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E+ L + + + +++L +QV++ S A+ +R ++ AL Sbjct: 581 ALQERVDALEADATRGADAAEYLARIEELQQQVKELSGRSRDAPADETAIRALEEKIRAL 640 Query: 585 YKRFRLLSRQKEEIEKQIAQVTA---KGEAEKTAILISILHEVHIQIHQI-ESQEAMIE- 639 Q E+++ + A + + + L + ++ + ++ EA+ + Sbjct: 641 TDEIEARDNQIAELKELVDGAPAQPVEADPAQLTALEEENGRLKDELQALNDALEALRKS 700 Query: 640 GFGKMSG 646 G + SG Sbjct: 701 GADEASG 707 Score = 44.1 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 29/288 (10%), Positives = 88/288 (30%), Gaps = 13/288 (4%) Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DP+ + F+ +V+ + + L T + A + + +++ Sbjct: 961 DPEEQAKVSSILDFDDGLVQKVDELQALVNALTGENDHYKGEH-ARIMAEMDALKEDLRN 1019 Query: 418 QKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 KLR + ++RL L + + + A ++ R+ + + Sbjct: 1020 GKLRSDSLEGDKERLMKQVRDLTDLVESLRKDLGAPQDQGEVAALRQEVADLRSRVDELT 1079 Query: 471 LVKGKLSKKPSLREAA--LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + E ++ + + L E E+ + E +++ L + Sbjct: 1080 DAARGKDETIEQLEKELAIVRASVENTERLSELLAEVEGYKTKLGESKEMVDSLLAQLAS 1139 Query: 529 QKYFLPEE---IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L + + G ++ + A + ++ ++ + Sbjct: 1140 KDAELAGATTGLRAVTDDDGAELAKARVASLENEVAELRGQLSAKLAEIDAVHKNLVDSD 1199 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 L + + Q+ + E+ +L L + ++ ++ + Sbjct: 1200 AEAARLREELGGLRVQLETAQVPEDTERVRMLEDQLQDARKELAELRA 1247 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 22/251 (8%), Positives = 69/251 (27%), Gaps = 37/251 (14%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ--SSLVKGKLSKKPSLRE 484 + ++L+ K D + L + L K K + E Sbjct: 1269 ELANKLEASEATVRELRESAEALQDKLHALSDSRAADGDLQKLVEQLEKDLSGAKELVAE 1328 Query: 485 AAL----LLTLINHPAILQEQYQELADIRYD-----------NNELQKLWSFLFS----- 524 L + + + +A++ + + E+ +L L + Sbjct: 1329 RDATIDELKQRLRDTEEYDDLKERIAELDDEIAVLNDGLKDKDAEIAELREQLEAQPTAT 1388 Query: 525 --DFVEQKYFLPEEIHQRLCERGF---------GELLKQLDRQVRDAGLWSATTEANIVD 573 + + + + L+ +L ++ + + ++ Sbjct: 1389 TVYPESGEEVGDAAALREVQDENAALKDELEAKRSLIDELQDEIDGLKQQCSDLKDEMIK 1448 Query: 574 VRQGYQQALALYKRFRLLSR-QKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIH 629 + + + SR Q +++++ + + L L ++ ++ Sbjct: 1449 LDSANNDKITALQCSLDESRKQIADLQEEVEVLKNTANDIDPAVVESLQEELRKLQEELD 1508 Query: 630 QIESQEAMIEG 640 E+ ++G Sbjct: 1509 DRENTITELQG 1519 Score = 38.7 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 1/129 (0%) Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 D ++ L L E + + G L D ++ + S T Sbjct: 1224 DTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRAELATADPELANKLEASEATVRE 1283 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + + + Q L R +++ +Q+ + G E A + + E+ ++ Sbjct: 1284 LRESAEALQDKLHALSDSRAADGDLQKLVEQL-EKDLSGAKELVAERDATIDELKQRLRD 1342 Query: 631 IESQEAMIE 639 E + + E Sbjct: 1343 TEEYDDLKE 1351 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 27/206 (13%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 RL++ + + + + ++ L K E Sbjct: 1202 AARLREELGGLRVQLETAQVPEDTERVRMLEDQLQDARKELAELRAALEAKEMETEGLRA 1261 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 P + + L EL++ L R + + Sbjct: 1262 ELATADPELANK----LEASEATVRELRESAEALQDKLHALSD-------SRAADGDLQK 1310 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L++QL++ + A A +A I +++Q + + + ++++++IA++ Sbjct: 1311 LVEQLEKDLSGAKELVAERDATIDELKQRLRD-----------TEEYDDLKERIAELD-- 1357 Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634 ++ A+L L + +I ++ Q Sbjct: 1358 ---DEIAVLNDGLKDKDAEIAELREQ 1380 >gi|152968276|ref|YP_001364060.1| replicative DNA helicase [Kineococcus radiotolerans SRS30216] gi|151362793|gb|ABS05796.1| replicative DNA helicase [Kineococcus radiotolerans SRS30216] Length = 903 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 16/136 (11%), Positives = 43/136 (31%), Gaps = 10/136 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E +L ++ + + + L + + ++ + + + P Sbjct: 40 RMPPQDIAAEQGVLGGMMLSKDAIADVVEVLKGNDFYRPAHELVYEAILDLYSRGEPADP 99 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + L +G +L R L + Y + + R R + R+ Sbjct: 100 VTVSAELTNKG------ELTRIGGTPYLHDLISTVPTAANAAFYARIV----RERAVLRR 149 Query: 595 KEEIEKQIAQVTAKGE 610 E +I Q+ + Sbjct: 150 LVEAGTRIVQMGYGAD 165 >gi|320164484|gb|EFW41383.1| Ser-Thr protein kinase PK428 [Capsaspora owczarzaki ATCC 30864] Length = 1729 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 27/290 (9%), Positives = 78/290 (26%), Gaps = 30/290 (10%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 K + +T + + + Q R + Sbjct: 661 EAEDARKKAEQLALHRQEALAAAEAQALTSTSELDKAKQRQTSADEELARLQTERDDLRK 720 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + + Q L + + + + ++ + + S +A Sbjct: 721 KLAESTQSLTDQLAAAQQEARDVQAELEQVEQELDAERKKEKQKDRARRGLSTISSADAL 780 Query: 487 LLLTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541 + + E + + + ++KL + L +E + E + Q+L Sbjct: 781 VAQLSACRTQLQDARDEHDLTIQQLEAEQQTVRKLRAELEELRLENQRLVSQTELLQQQL 840 Query: 542 CE-----------------------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + + ++L R + + EA ++ Sbjct: 841 TDTKSSRETATSQITESETRLRALEKQASDAQEELSRVSAERDRLAERAEAQSQAAKESR 900 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + L + + E++ + ++ EAE+ L ++ Q+ Sbjct: 901 NSQRSAQDQASALRVELSQAEEERKRALSELEAER--KAHKELRDLKAQL 948 Score = 42.2 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 33/292 (11%), Positives = 85/292 (29%), Gaps = 12/292 (4%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 L D + + + L ++ + + ++ Sbjct: 784 LSACRTQLQDARDEHDLTIQQLEAEQQTVRKLRAELEELRLENQRLVSQTELLQQQLTDT 843 Query: 406 IHLKNC-INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + + I + + R + Q+ + E + ++ + SQ Sbjct: 844 KSSRETATSQITESETRLRALEKQASDAQEELSRVSAERDRLAERAEAQSQAAKESRNSQ 903 Query: 465 RLMQS--SLVKGKLSKKPSLREAALLLTLIN---HPAILQEQYQELADIRYDNNELQKLW 519 R Q S ++ +LS+ R+ AL H + + Q ++ + + +K Sbjct: 904 RSAQDQASALRVELSQAEEERKRALSELEAERKAHKELRDLKAQLSLEVERVSTDARKAQ 963 Query: 520 SFL-FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 S L + P ++ ++ ++ + L + D Sbjct: 964 SKLDAEIARAARSPNPADLVSKIDSLTREIATAAKEQTKAQSDLEHLKARLS-EDKEAFE 1022 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 ++ L ++ RQ + E + + E L + E+ Q+ + Sbjct: 1023 REKADLTQQLVAKQRQVNQTEAR----QDRQNKEDMRRLQQQITEMKSQLEK 1070 >gi|88707050|ref|ZP_01104746.1| Chaperone clpB [Congregibacter litoralis KT71] gi|88698700|gb|EAQ95823.1| Chaperone clpB [Congregibacter litoralis KT71] Length = 862 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 2/131 (1%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + ++ + S I ++ + + + T Sbjct: 388 AIDLIDEAASRIRMEIDSKPEALDRLERRLIQLKIEREAVRKDEDESATKQLALLDEQIT 447 Query: 567 T-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624 E D+ + ++ A + + E+++ + G+ + + L L E+ Sbjct: 448 AIEKEFADLEEIWKAEKASLQGAASVKSDIEQLKLDLETARRAGDLTRMSELQYGKLPEL 507 Query: 625 HIQIHQIESQE 635 Q+ Q ++ E Sbjct: 508 EKQLAQAQAAE 518 >gi|55378409|ref|YP_136259.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049] gi|55231134|gb|AAV46553.1| chromosome segregation protein [Haloarcula marismortui ATCC 43049] Length = 1195 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 31/240 (12%), Positives = 74/240 (30%), Gaps = 29/240 (12%) Query: 425 SQAIRDRLQQLFQKYIT--------EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + + R+ +L + E +++ + + + Sbjct: 695 LERVATRINELEDERADVRDDLRDVEERLDDARDRESDATEQVRDIETSIERKQTALEDT 754 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 ++ EA L + + + ADI E+ L + E + + Sbjct: 755 RERIEQLEADLEEIADEREDVADQMDELEADIEAKTEEIDALQRDIDELEAEVEDSELPD 814 Query: 537 IHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + + +LD ++ + L E I D+ + A R Sbjct: 815 LTDQRESIKDDIDALEDRQGELDAELNEHQLEKQYAEEAIEDLHDDIEAAQN---RKADH 871 Query: 592 SRQKEEIEKQIAQV-TAKGEAEKTAI-LISILHEVHIQIHQIES-----------QEAMI 638 + +++E +A+ KGE E+ L L E+ + +++ Q+A + Sbjct: 872 EERIDDLEATVAEKQELKGEKEQAVADLEEELAELKSEREDLKADLQEAKEARDEQQAAV 931 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 53/158 (33%), Gaps = 19/158 (12%) Query: 498 LQEQYQELADIRYDN--NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + E E+ D + ++ + + + + Q E +L ++ E ++ L Sbjct: 800 IDELEAEVEDSELPDLTDQRESIKDDIDALEDRQGELDAELNEHQLEKQYAEEAIEDLHD 859 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY-----------KRFRLLSRQKEEIEKQIAQ 604 + A A E I D+ + L + L ++E+++ + + Sbjct: 860 DIEAAQNRKADHEERIDDLEATVAEKQELKGEKEQAVADLEEELAELKSEREDLKADLQE 919 Query: 605 VTAKGEAE-----KTAILISILHEVHIQIH-QIESQEA 636 + + + + E ++ +I+ EA Sbjct: 920 AKEARDEQQAAVSEIERDLESEQETQERLEWEIDELEA 957 Score = 37.2 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 11/148 (7%) Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQK------YFLPEEIHQRLCERGFGELL- 550 L+++ +EL + +EL+ + L ++ E++ E++Q + +G E L Sbjct: 255 LEDKREELTAVEESIDELESELTELQAELDERQGAVIRLEDELHELNQEIERKGEDEQLA 314 Query: 551 --KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT-- 606 ++++ D E+ V + + + +++E I + Sbjct: 315 IKREIEEIKGDISRLEDKIESAEETVEAAENERRQAFVQIDRKQETIDDLESDIRETKVA 374 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634 A S L EV +I ++ + Sbjct: 375 KSNVKADIAEKESELAEVQQRIDEVGEE 402 >gi|145610094|ref|XP_366640.2| hypothetical protein MGG_02716 [Magnaporthe oryzae 70-15] gi|145017477|gb|EDK01840.1| hypothetical protein MGG_02716 [Magnaporthe oryzae 70-15] Length = 2396 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 38/315 (12%), Positives = 94/315 (29%), Gaps = 14/315 (4%) Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + +++ + V R D + ++ A ++ + Sbjct: 1653 AAEFQRNLEMAETKIEVEIMNRSVYDQRVHDLEERLKHQEVKAEQEASARRTAEDRLAEN 1712 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 + S E + I I++ K + RL L Sbjct: 1713 QRLLRISSEEETRLREALEEKEQKIKSIEESKGKTTM------RLALLEASQTNNQQSQA 1766 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 K + +++ ++ + + + ++ + L + L++ L Sbjct: 1767 DIQNKMNATETELREARQDARTWKAEAERVNNIARQQGSDLAQVNEQNKHLKKIIDTLGT 1826 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR--LCERGFGELLKQ---LDRQVRDAGL 562 +N +++ W F +I + + ELL + LD +++ Sbjct: 1827 QLEENERIRETWRGKFVSLQNDMTDAAAKITEESAHRIKKEQELLARQEVLDAKLQAEAR 1886 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILIS 619 E+ + + G +Q + + L E++ Q+ Q + + + E S Sbjct: 1887 TRERLESELERLEAGERQGIRAVNECKRLDTLLAELKTENHQLQQSSMRYQIEFQEARDS 1946 Query: 620 ILHEVHIQIHQIESQ 634 EV ++SQ Sbjct: 1947 AAREVQRTRDAMQSQ 1961 >gi|257783837|ref|YP_003179054.1| replicative DNA helicase [Atopobium parvulum DSM 20469] gi|257472344|gb|ACV50463.1| replicative DNA helicase [Atopobium parvulum DSM 20469] Length = 479 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 20/178 (11%), Positives = 52/178 (29%), Gaps = 19/178 (10%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 Q + ++ + S E ++L +I I E L+ + Q ++ + S Sbjct: 9 NPTQLTALENASMPQDSDAEFSILSAMILSEEIRGECLIRLSSEDFYIPSNQIIFEAIKS 68 Query: 525 DFVEQKYFLPEEIHQRLCERGFGE----LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 F K + L G E ++ + + A ++ ++ Sbjct: 69 LFDNNKPVDVISLADHLKSNGKFERAGGAVRLAELGNNPLAMVGWENHAVMLHRDTTLRK 128 Query: 581 ALALYKRFRLL---------------SRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 ++ + L + ++ + Q + + + L L + Sbjct: 129 MISASAKISALAYNAPEDTKQVVDQAEKLIFDVTNRDVQQSEQNIEDIMTNLFDELQQ 186 >gi|111305480|gb|AAI21232.1| dctn1 protein [Xenopus (Silurana) tropicalis] Length = 925 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%) Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+ L + L + + +A K ++ L Sbjct: 168 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 227 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + D ++ K A E L + + +M + + + E L+ Sbjct: 228 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 287 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ +KD+ + L+ + + E G ++ Q ++ + Sbjct: 288 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 337 Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525 LV+ + +E + + L++Q ++L + + +L + + Sbjct: 338 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 397 Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 EE+ + L ER E +++L V D + + + R+ L Sbjct: 398 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 448 Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638 L ++ + + E EK++ + + K L + L EV+ ++ QEA + Sbjct: 449 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 506 Query: 639 E 639 E Sbjct: 507 E 507 >gi|3986196|dbj|BAA34955.1| myosin heavy chain [Dugesia japonica] Length = 1743 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 29/250 (11%), Positives = 92/250 (36%), Gaps = 8/250 (3%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 ++A++E +K + + +++ + + +L ++ + +K + + Sbjct: 702 QKADMEGRIKELEDQLSEEENSATTLEEAKKKLNGEIEELKKDVESLESSLQKAEQEKAA 761 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH-PAILQEQYQELADIRYDNNELQKL 518 K + + ++ + + +E L L+ + ++++++ +L++ Sbjct: 762 KDQQIKTLNDNVREKEEQITKMQKEKKAADELQKKTEESLRAEEEKVSNLNKAKAKLEQA 821 Query: 519 WSFLFSDFVEQKYF--LPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDV 574 + + ++ E+ +++ E+L L+R + E + Sbjct: 822 VDEMEENLSREQKVRADVEKAKRKVEGELKQNQEMLNDLERVKSELEEQLKRKEMELNGA 881 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + L L R+ +E++ +I ++ EAE+ A + + ++ E Sbjct: 882 NSKIEDENNL---VATLQRKIKELQARIQELEEDLEAERQARAKAEKAKHQLEAEIEEVT 938 Query: 635 EAMIEGFGKM 644 E + E G Sbjct: 939 ERLEEQGGAT 948 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 28/246 (11%), Positives = 82/246 (33%), Gaps = 22/246 (8%) Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + ++ ++ + K + + ++ RLQ + + + + + Sbjct: 1176 EMEEFKRKMNARIQELEEESESNKSKCSQLEKVKSRLQGEIEDLLIDVERANGLASQLEK 1235 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLRE-AALLLTLINHPAILQEQYQELADIRYDNNE 514 + Q + + + SLRE + + ++L+ ++ ++ +N Sbjct: 1236 KQKGVDKLIGEWQKKYSESQQELEVSLRESRTVSAEVFKLKSVLENSQDQIESLKRENKN 1295 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L L E + ++++ + + + + + Sbjct: 1296 LSDEIHDLTEQLGEGGRN-----------------VHEIEKARKRIEIERDELQHALEEA 1338 Query: 575 RQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--I 631 +Q A +R +L +S+ ++E E++IA+ + E + L + + Sbjct: 1339 ESALEQEEAKSQRAQLEISQARQEAERRIAEKEEEFEVTRKNH-QRSLESMQASLEAEVR 1397 Query: 632 ESQEAM 637 EAM Sbjct: 1398 GRTEAM 1403 >gi|284799760|ref|ZP_05984780.2| replicative DNA helicase [Neisseria subflava NJ9703] gi|284797058|gb|EFC52405.1| replicative DNA helicase [Neisseria subflava NJ9703] Length = 471 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L + E ++L L+ + ++ + +E + ++ + + Sbjct: 11 PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + + + L ++L+ L + + Y + + Sbjct: 71 LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 122 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175 >gi|194218881|ref|XP_001916140.1| PREDICTED: cut-like homeobox 1 [Equus caballus] Length = 1327 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +++ + + + + + + + N + K + +A+++++++ Sbjct: 178 DPVPALELGQQLQVKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 237 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + + L T + Sbjct: 238 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQT--LQTALEKT 295 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + +I +E++ + + L + E E + ++L L Sbjct: 296 RTELFDLKTKYDEEITAKADEMEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 355 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 356 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLSKLRENSASQISQL 415 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 416 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 461 >gi|325298296|ref|YP_004258213.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|330995853|ref|ZP_08319749.1| hypothetical protein HMPREF9442_00821 [Paraprevotella xylaniphila YIT 11841] gi|324317849|gb|ADY35740.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|329574384|gb|EGG55955.1| hypothetical protein HMPREF9442_00821 [Paraprevotella xylaniphila YIT 11841] Length = 323 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+D+ I +++ + Y ++ N W P +E SF N +Y Sbjct: 2 TIQDVKQ-IKLADYLQSLGYTPVKQQGRNL-----WYKSPLREETDASFKVNTELEKWYD 55 Query: 65 FSCHVKGDH 73 F G+ Sbjct: 56 FGIGKGGNI 64 >gi|332265086|ref|XP_003281557.1| PREDICTED: myosin-11 [Nomascus leucogenys] Length = 1358 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + + E E ++ ELE L +++++ R QA R ++ Q Sbjct: 873 QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 932 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + +K + + ++ ++ +E LL Sbjct: 933 LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLE------E 986 Query: 497 ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545 + + LA+ L KL + S+ E+ E++ ++L Sbjct: 987 RISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGEASD 1046 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 F E + L Q+ + + A E + +A + ++ E+E I+ + Sbjct: 1047 FHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDL 1103 Query: 606 TAKGEAEKTAILISILH--EVHIQIHQIESQ 634 ++E+ A + ++ ++ ++++ Sbjct: 1104 QEDLDSERAARNKAEKQKRDLGEELEALKTE 1134 Score = 37.2 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 77/249 (30%), Gaps = 12/249 (4%) Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 + E+ T + + + E LK Q ++LQ + Y Sbjct: 834 MQAKEDELQKTKERQQKAENELKELEQKHSQLTEEKNLLQ---EQLQAETELYAEAEEMR 890 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 R K + + ++ +G+ + + A +L L + Q+L Sbjct: 891 VRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQ 950 Query: 507 DIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + ++KL + + E L + + + ++ Sbjct: 951 LEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLEERISDLTTNLAEEEEKAKNLTKLKN 1010 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 E+ I ++ ++ + L R+ + A E+ A L + + E+ Sbjct: 1011 KHESMISELEVRLKKEEKSRQELEKLKRKL--------EGEASDFHEQIADLQAQIAELK 1062 Query: 626 IQIHQIESQ 634 +Q+ + E + Sbjct: 1063 MQLAKKEEE 1071 >gi|308159909|gb|EFO62425.1| Hypothetical protein GLP15_358 [Giardia lamblia P15] Length = 1522 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 16/203 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR---EAALLLTLI 492 F + G R ++A + + ++ S ++ ++ +LR E + Sbjct: 237 FNEEKKRIDGKHRAELQSAETQTARLATEIDALKSRLEQAEAEADALRTRCEEDVDKQKA 296 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + ++ ++A + E + S +F + + ++ L + Sbjct: 297 YYDDQIEYLNSQVASLT----EAARSASGMFEGEIAARDRDITKLSAELRD--------S 344 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 L+R+ GL + + ++ Q +Q + L + L+ + +E E+ +A++ AK Sbjct: 345 LEREDYLKGLMNQLKREHKDELDQLRKQNVKDLDAQKADLTEKIKEAERTLAEMLAKNTD 404 Query: 612 EKTAILISILHEVHIQIHQIESQ 634 + A LI+ L E + ++E Q Sbjct: 405 GQIADLIAKLQEQEQRNERLEKQ 427 >gi|170587802|ref|XP_001898663.1| hypothetical protein Bm1_36080 [Brugia malayi] gi|158593933|gb|EDP32527.1| hypothetical protein Bm1_36080 [Brugia malayi] Length = 790 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 79/255 (30%), Gaps = 19/255 (7%) Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY-WKKNARHRDQKGPS 463 K + ++ Q ++ + + PS Sbjct: 238 WHRTSEKKAQRKSHTAQKILPAIFNEKTQDGIYAHVKKVGNNVEKINTVLLETSLENQPS 297 Query: 464 QRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQEQ-------YQELADIRYDNN 513 + ++ + + S+ E L L LI H + +E +E+ D + Sbjct: 298 GHIPGRKKMQQNEAVESSVTERNLAKQLRDLIVHVDLAKEYRHHEYKRLEEIFDQALEEK 357 Query: 514 EL-----QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 E +L ++ +++ ++ E+ +++L R+ + Sbjct: 358 EYFRQQVNELKKYIAQLEEDKQARQENLAVRKETEKICNADIERLRRENVVLNRKQKQND 417 Query: 569 ANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTA--KGEAEKTAILISILHEVH 625 + + ++ + L R RQ+ E++ QI + K + E L + Sbjct: 418 GSDSALVNTLKEQISDLRIMVRDFDRQRSELKMQIRKSNTALKEKNEIIEQLKGEKTRLE 477 Query: 626 IQIHQIESQEAMIEG 640 +I I +A + G Sbjct: 478 KRIAIITKNKAALRG 492 >gi|320160812|ref|YP_004174036.1| chaperone ClpB [Anaerolinea thermophila UNI-1] gi|319994665|dbj|BAJ63436.1| chaperone ClpB [Anaerolinea thermophila UNI-1] Length = 861 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 46/142 (32%), Gaps = 9/142 (6%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565 I + +L + + S + + + + E K ++ A Sbjct: 388 AIDLIDEAAARLRTEIDSKPQAIDEVDRQILQLEIERQALQKERDKASQERLSKLEQELA 447 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--------IL 617 + + ++ R + Q ++ + I + + E+ A L Sbjct: 448 NLKEKSASLHARWKLEKEAIANLRQVKEQIDQTYRDIERAERENNLEEAARLRYGVLHEL 507 Query: 618 ISILHEVHIQIHQIESQEAMIE 639 + + E ++ +I+ + A+++ Sbjct: 508 QNKVKEAEKRLAEIQQEGALLK 529 Score = 38.7 bits (88), Expect = 3.4, Method: Composition-based stats. Identities = 32/275 (11%), Positives = 87/275 (31%), Gaps = 40/275 (14%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 + T + ++ LE + + + + ++ R + IT+ Sbjct: 307 HMIGATTLDEYRKHIEKDPALERRFQPILVEEPSVEDTISILRGLKSRYEVHHGVRITDA 366 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + + D+ P + + +L + + P + E + Sbjct: 367 AVITAATLSHRYIPDRHLPDKAIDLIDEAAARLRTEIDSK-----------PQAIDEVDR 415 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR---------LCERG---FGELLK 551 ++ + + LQK + + + + ++ L + ++ + Sbjct: 416 QILQLEIERQALQKERDKASQERLSKLEQELANLKEKSASLHARWKLEKEAIANLRQVKE 475 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 Q+D+ RD + R Y L + + ++ EI+++ A + + +A Sbjct: 476 QIDQTYRDIE-RAERENNLEEAARLRYGVLHELQNKVKEAEKRLAEIQQEGALLKEEVDA 534 Query: 612 EKTAIL----------------ISILHEVHIQIHQ 630 E+ A + + L E+ ++HQ Sbjct: 535 EEIAEIVSRWTGIPVSRLLEGEMKKLLEMEERLHQ 569 >gi|241758861|ref|ZP_04756974.1| replicative DNA helicase [Neisseria flavescens SK114] gi|241321069|gb|EER57282.1| replicative DNA helicase [Neisseria flavescens SK114] Length = 468 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L + E ++L L+ + ++ + +E + ++ + + Sbjct: 8 PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 67 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + + + L ++L+ L + + Y + + Sbjct: 68 LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 119 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 120 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 172 >gi|145480257|ref|XP_001426151.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393224|emb|CAK58753.1| unnamed protein product [Paramecium tetraurelia] Length = 981 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 33/269 (12%), Positives = 94/269 (34%), Gaps = 20/269 (7%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 R E+ D A+ + L N + + + + + + +L+ + E Sbjct: 477 QESIIRRLESDLQRAEDIIAQKDQELNRLANDLSNAESKIRELEFLIQQLRDQIEDQRKE 536 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE----AALLLTLINHPAIL 498 + + D + + + E ++ +L Sbjct: 537 IERLQQLIQDRDHSLDMAEKDLEEADRKIHQLENENATLNEELKDYRQNYDQVLKDNELL 596 Query: 499 QEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +++ +L + E+ +L L E++ E++ ++ + + L+ QV Sbjct: 597 EKKIGDLESKTVFLAQEIDRLKLIL-----EKRNKEIEDLKAQILK--LKAEISTLETQV 649 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-----AE 612 +D + D+ + + + ++ L+ Q + +Q+ Q+ + E + Sbjct: 650 KDFQQKLDEKLKDYDDLNKKLIERVLEVQQ---LNSQIIILNQQLVQLQSVNEKCRNQED 706 Query: 613 KTAILISILHEVHIQIHQIESQEAMIEGF 641 + + L E+ Q+++ + + M++GF Sbjct: 707 QIKDYLRQLDELTRQLNKAQQEINMLQGF 735 >gi|46199425|ref|YP_005092.1| endopeptidase Clp ATP-binding chain B, clpB [Thermus thermophilus HB27] gi|54035771|sp|Q72IK9|CLPB_THET2 RecName: Full=Chaperone protein ClpB gi|46197050|gb|AAS81465.1| endopeptidase clp ATP-binding chain B, clpB [Thermus thermophilus HB27] Length = 854 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496 + I + R ++ + +++ K ++ + ++A++ ++H Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548 I + + + I + +L L S E +++ + E Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LK ++ ++ A A R+ ++ R + R+ E E+Q Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483 Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631 + + A L L ++ ++ + Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507 >gi|121595515|ref|YP_987411.1| primary replicative DNA helicase [Acidovorax sp. JS42] gi|222111736|ref|YP_002554000.1| replicative DNA helicase [Acidovorax ebreus TPSY] gi|120607595|gb|ABM43335.1| primary replicative DNA helicase [Acidovorax sp. JS42] gi|221731180|gb|ACM34000.1| replicative DNA helicase [Acidovorax ebreus TPSY] Length = 472 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 67/182 (36%), Gaps = 15/182 (8%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + + + ++ E+++L L+ L D + +E Q++++ + + Sbjct: 15 PSLDREVAQLRVPPHSIEAESSVLGGLLLDNMAWDRVGDLLVDGDFYRHEHQQIYAAIGA 74 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQ 580 K +++ L G E + L A + + A IV R ++ Sbjct: 75 LINASKPADVITVYEHLQGMGKAEEIGGLAYLNSLAQYVPSASNIRRYAEIVRERAILRK 134 Query: 581 ALAL---------YKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIH 629 + + R + R +E E++I + +G + L S++ ++ ++ Sbjct: 135 LVTASDDIATNAFNPQGRPVERILDEAEQKIFAIGEEGSRMKQGFQSLDSLVIDLLDRVQ 194 Query: 630 QI 631 ++ Sbjct: 195 EM 196 >gi|288575596|ref|ZP_06393826.1| replicative DNA helicase [Neisseria mucosa ATCC 25996] gi|288567301|gb|EFC88861.1| replicative DNA helicase [Neisseria mucosa ATCC 25996] Length = 556 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 12/180 (6%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 P + L E ++L L+ + + + +E + ++ Sbjct: 93 PDTSSEDREVSALSLPPHSMEAEQSVLGGLLLENSAWDRIADVVTGEDFYRHEHRLIFRA 152 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + E + + + L ++L+ L + + Y + Sbjct: 153 IANLINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEI 206 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 207 V----RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 260 >gi|319638415|ref|ZP_07993177.1| replicative DNA helicase [Neisseria mucosa C102] gi|317400164|gb|EFV80823.1| replicative DNA helicase [Neisseria mucosa C102] Length = 471 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 56/177 (31%), Gaps = 12/177 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + L + E ++L L+ + ++ + +E + ++ + + Sbjct: 11 PSEDREISALSLPPHSTEAEQSVLGGLMLENSAWDRIADVVSGEDFYRHEHRLIFRAIAN 70 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 E + + + L ++L+ L + + Y + + Sbjct: 71 LINESRPADVITVQESLERN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV-- 122 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 123 --RERSIMRQLAEVGTEIARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 175 >gi|297288071|ref|XP_001114534.2| PREDICTED: cut-like 1 [Macaca mulatta] Length = 1514 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373 >gi|134114219|ref|XP_774357.1| hypothetical protein CNBG3380 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256992|gb|EAL19710.1| hypothetical protein CNBG3380 [Cryptococcus neoformans var. neoformans B-3501A] Length = 1056 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + +L K E S + D + R L + + Sbjct: 593 RDQQALQLEEARAELRDKDDREKSRLIKASHPEENEEDGEVEKMRKEMKELQRKVGEMEG 652 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPE 535 E L L+E ++EL +++ +E+Q L + L S + + + Sbjct: 653 KEEEVQALR------QELEEVHRELEEVKDQGSEVQALRTELSSAHHQLDEYELMKADVD 706 Query: 536 EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + L + + ++ + ++ A E DV L + Sbjct: 707 ALQKELADLRHHVQELKQVKAADEEEIETLLDQVAKLEVESRDVEDLKYHFDQLKQVKTA 766 Query: 591 LSRQKEEIEKQIAQVTAKGEAE-----KTAILISI-------LHEVHIQIHQIESQEAMI 638 + E + +QI ++ A+ E K L V +++ ++ S+E + Sbjct: 767 NEEEIENLLRQIEKLKAERRQEDEWKSKVEELSKRVDMEGMRRQNVELELEEVRSREIKL 826 Query: 639 EG 640 EG Sbjct: 827 EG 828 Score = 39.5 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 11/120 (9%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + L+++ L A + D + L Sbjct: 560 AAQSEARDLEIRLAKALADAAATSRQLEEVKNSRDQQALQLEEARAELRDKDDREKSRLI 619 Query: 584 ---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ +E+++++ ++ G+ E+ L L EVH ++ +++ Q Sbjct: 620 KASHPEENEEDGEVEKMRKEMKELQRKVGEME--GKEEEVQALRQELEEVHRELEEVKDQ 677 >gi|260588425|ref|ZP_05854338.1| conserved hypothetical protein [Blautia hansenii DSM 20583] gi|260541299|gb|EEX21868.1| conserved hypothetical protein [Blautia hansenii DSM 20583] Length = 370 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 91/324 (28%), Gaps = 54/324 (16%) Query: 61 FYYCFSCHVKGDHLSFLSALLG-----CSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 ++C++C D + SF ++V+ +A I+ Sbjct: 66 IFHCYTCTDTYDVYELVIRARRKQGITISFPQAVKYVANISN------------------ 107 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 F+ +K + R S + + + E Sbjct: 108 ---------NVFYKKDHVIQEEKIDDWNWINRLKSSQN--KKSIPQLSEINEHILEVFCP 156 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 G + + +N++I P R G++I GR L++ + Sbjct: 157 YPHEVWLEEGIGKDSMKKYQISYWG-EQNKIIIPHRDIDGRLIGIRGRALNQSDLEAKRK 215 Query: 236 SPETIL------FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSL--C 287 + G NLY +++ + II+ E VL Sbjct: 216 YMPITIQGKVLKHTLGNNLYGLCQNEEAIKRMGK----------IIIFESEKSVLLCDTY 265 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWK-LSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 V+ G+ +T+ Q R++ +++ FD + ++ + Sbjct: 266 YQQNNFSVAVCGSNITDTQCRMIRSLGVSEVMIAFDKEYENAKSKLAEAYYNKLLKLAYK 325 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTA 370 + + D + ++ A Sbjct: 326 LTPYCTVYLLMDTEDLLKQKDSPA 349 >gi|156363665|ref|XP_001626162.1| predicted protein [Nematostella vectensis] gi|156213028|gb|EDO34062.1| predicted protein [Nematostella vectensis] Length = 1604 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 78/226 (34%), Gaps = 21/226 (9%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA- 485 I D L +L ++ + ++ ++ K + L + EA Sbjct: 305 EIFDELNKLEERLQDLEDLQAQRFELQKKYDSLKEKYETLRAENDDFVGQINAYVDLEAK 364 Query: 486 ---ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + ++ E + + +L + + +++ + L Sbjct: 365 GREQFARLQAKYDELVAENAELAENCDLLEKNEARLKKEIDDLRAQ--LADNDDLEKNLD 422 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + +++L+ + + E I+ +R+ + L L R+ ++ +K + Sbjct: 423 D------MRKLESKYELVIIEKEKLEREIIVLREVETKYKLLVIEKEGLERKLKDEQKVV 476 Query: 603 AQVTAKGE---------AEKTAILISILHEVHIQIHQIESQEAMIE 639 +++ K E EK + + E+ ++ ++E ++ ++E Sbjct: 477 SELKIKLERFSEDGTELEEKIRSQRNRITELERRVKELEKEKNLLE 522 >gi|293604278|ref|ZP_06686685.1| replicative DNA helicase DnaB [Achromobacter piechaudii ATCC 43553] gi|292817155|gb|EFF76229.1| replicative DNA helicase DnaB [Achromobacter piechaudii ATCC 43553] Length = 460 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 58/196 (29%), Gaps = 15/196 (7%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 L ++ E ++L L+ L + + ++ + +W + Sbjct: 4 PADPQLEYLRVPPHSIEAEQSVLGGLLLDNTAWDRIADVLVEEDFYRHDHRLIWHHIARL 63 Query: 526 FVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + +++ L G E L L A E Sbjct: 64 IGLARPADVITVNESLISAGKAEDSGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKL 123 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILHEVHIQIHQ 630 ++A L+ Q +E + + + +K A + +L +V +I + Sbjct: 124 VSIADEISSAALNPQGKEARQLLDEAESKVFKIAQEGSRGAAGFQEIQPLLTQVVERIDE 183 Query: 631 IESQEAMIEGFGKMSG 646 + +E + G +G Sbjct: 184 LYHREGSSDVTGVPTG 199 >gi|148277064|ref|NP_853530.2| protein CASP isoform a [Homo sapiens] gi|296439379|sp|P39880|CUX1_HUMAN RecName: Full=Homeobox protein cut-like 1; AltName: Full=CCAAT displacement protein; Short=CDP; AltName: Full=Homeobox protein cux-1 Length = 1505 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373 >gi|300300|gb|AAB26579.1| CCAAT displacement protein, CDP [human, Peptide, 1505 aa] Length = 1505 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 90 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 149 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 150 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 207 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 208 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 267 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 268 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 327 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 328 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 373 >gi|38492937|pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb gi|38492938|pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb gi|38492939|pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb gi|5231279|dbj|BAA81745.1| ClpB [Thermus thermophilus] gi|8051691|dbj|BAA96085.1| ClpB [Thermus thermophilus] Length = 854 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496 + I + R ++ + +++ K ++ + ++A++ ++H Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548 I + + + I + +L L S E +++ + E Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LK ++ ++ A A R+ ++ R + R+ E E+Q Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483 Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631 + + A L L ++ ++ + Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507 >gi|29833783|ref|NP_828417.1| ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] gi|54035822|sp|Q826F2|CLPB2_STRAW RecName: Full=Chaperone protein ClpB 2 gi|29610907|dbj|BAC74952.1| putative ATP-dependent Clp protease [Streptomyces avermitilis MA-4680] Length = 879 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 71/214 (33%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R +++ + +++ + ++ +++ AL+ ++H Sbjct: 324 YRKHIEKDAALERRFQQVLVDEPSVEDTISILRGLRERLEVFHGVKIQDTALVSAATLSH 383 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + E + Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKESD--- 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607 L E + + A ++ R R+ +E+ +++ + Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640 + + A L L ++ ++ E Q A +G Sbjct: 497 AYDLNRAAELRYGRLQDLERRLAAEEEQLAAKQG 530 >gi|315224003|ref|ZP_07865844.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] gi|314945974|gb|EFS97982.1| conserved hypothetical protein [Capnocytophaga ochracea F0287] Length = 692 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 90/340 (26%), Gaps = 46/340 (13%) Query: 30 RKTNAVKGDYWACCPFHDEKTPSFHCNDSKG-FYY--CFSCH-VKGDHLSFLSALLGCSF 85 + V ++ PF+D+K S + K Y F GD FL Sbjct: 23 QGNWRVGKNFK--NPFYDDKNASCNVYKDKQGIYKMKDFGNDTFSGDCF-FL-------- 71 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 V L L + I ++++ H L+ + + Sbjct: 72 ---VGYL-----YQLDCRNASD---------FIEILKIINRDLHLGLEESTS------II 108 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNR 205 + + + + ++ EE I + Sbjct: 109 TQKPQIPPTITIESTQVETKKSISYQFTQKPFIQEELAYWQKYGITQEILNRYNVISLQS 168 Query: 206 LIFPIRSSRGQVIAFGGRTLSKGESVKYL-NSPETILFHKGKNLYNFFGALNYLQKSIRK 264 + G+ + + + + F K + LY + Sbjct: 169 YSNTNKD--GRPYSIASTYNEWMFAYLFKKHLKIYRPFSKLRFLYGGNPE----NYCFGE 222 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDG 323 + G DV+SL G + + + +L+ L +VL FD Sbjct: 223 SQLPLQGDILFFTAGEKDVMSLASRGFSAICFNSETAHIPLQKLQKLKMRFRHLVLLFDS 282 Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 D+ G RA+ + + + + + +D + Sbjct: 283 DETGKRASLEQQAQLAPLEVFRLVLPLSGTKKDKDISDYF 322 >gi|225679604|gb|EEH17888.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 2430 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 41/433 (9%), Positives = 125/433 (28%), Gaps = 39/433 (9%) Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 N+P+ + L+ L + L + S + Sbjct: 1394 FNTPQPEMEKSSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1453 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV-- 351 ++S +++++ + +P I D D + + L VN + Sbjct: 1454 ILSPQRSSISDSNSPIRHLNNPEIEHVSDWD--DAISVGEDAKLRQRSRFFDRHVNEIVG 1511 Query: 352 -LLSRGEDPDSFIRCYGKTAFEKLIVESLPL--VDMLWKRETENRSFNTPDERAELEIHL 408 ++ DP + + + + + + +R ++ + + E Sbjct: 1512 GIIEDRLDPLERTLGVIQQSIDIIAANQVLNQSHNQNTRRSASAGVEHSDADDEDDEEDD 1571 Query: 409 KNCINHIKDQKLRY-----YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + + R QA+ + L + E + Sbjct: 1572 EALRYRSRSPLNRRGRHVNSIKQAVAEALASHVPRI--EVPAPPPAPVVDLTEIHVALAE 1629 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKL 518 + + + + + P + ++ + HP + + ++ LQ + Sbjct: 1630 LKTLAAPKPVEPVPEPPIDLKQVIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQAM 1689 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + E++Y + + + LL+ + TE D+++ Sbjct: 1690 LR-VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERT 1746 Query: 579 QQALALYKRFRLLSRQKEE---------------IEKQIAQVTAKGEAEKTAILI--SIL 621 +R L ++++E +E+ + + + ++ + + Sbjct: 1747 IPETERIERQSRLLQEQQESLQLTLSELSGKNISLEETLDEYRVSADQWRSQLEMVKREN 1806 Query: 622 HEVHIQIHQIESQ 634 ++ + I+ ++ Q Sbjct: 1807 KDLKLTINHMKEQ 1819 >gi|55981456|ref|YP_144753.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus thermophilus HB8] gi|66774200|sp|Q9RA63|CLPB_THET8 RecName: Full=Chaperone protein ClpB gi|55772869|dbj|BAD71310.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Thermus thermophilus HB8] Length = 854 Score = 47.2 bits (110), Expect = 0.008, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496 + I + R ++ + +++ K ++ + ++A++ ++H Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548 I + + + I + +L L S E +++ + E Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LK ++ ++ A A R+ ++ R + R+ E E+Q Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483 Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631 + + A L L ++ ++ + Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507 >gi|328702392|ref|XP_001952666.2| PREDICTED: hypothetical protein LOC100159915 [Acyrthosiphon pisum] Length = 930 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 8/143 (5%) Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 N + K+ + + +E + +LL++ V + L + Sbjct: 724 QNPLVAKIKQIVNREGLEDAAADVPALVSHAVAERLKDLLEKFA-VVAEHRLDFNKADKR 782 Query: 571 IVDVRQGYQQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + + + + + + R+K E+ + A+ +K E + A L + E+ Sbjct: 783 YE-ITRNIRGQIKCLEEIDKVERKKQDEMERELLLRAAKSRSKNEDPEQAKLKAKAKEMQ 841 Query: 626 I-QIHQIESQEAMIEGFGKMSGR 647 ++ ++ +EA + + R Sbjct: 842 RVEMEELRQREANLTALNAIGPR 864 >gi|224118916|ref|XP_002317937.1| predicted protein [Populus trichocarpa] gi|222858610|gb|EEE96157.1| predicted protein [Populus trichocarpa] Length = 689 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 34/197 (17%), Positives = 74/197 (37%), Gaps = 21/197 (10%) Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI-- 508 ++ R + + SQ+ + + KK S E L ++L+ +E+ ++ Sbjct: 40 EQGLRIAENQENSQKNRRKLAESTRDFKKASSDEKLGL-----FNSLLKGFQEEVDNLTK 94 Query: 509 --RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 ++ N ++ L+ P + E+ L +L+ + R + Sbjct: 95 RAKFGENAFLNIYQKLYEA------PDPYPALASISEQDLK--LSELESESRKMKVELEE 146 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE--- 623 ++ L +R R L +Q EE K+I ++ + AE+ + +L E Sbjct: 147 FRTEAAHLKNQQATIRRLEERNRQLEQQMEEKVKEIVEMKQRSLAEENQKTLEVLKEREQ 206 Query: 624 -VHIQIHQIESQEAMIE 639 + Q+ Q + A I+ Sbjct: 207 SLQDQLRQAKDSVATIQ 223 >gi|320104316|ref|YP_004179907.1| hypothetical protein Isop_2792 [Isosphaera pallida ATCC 43644] gi|319751598|gb|ADV63358.1| MJ0042 family finger-like protein [Isosphaera pallida ATCC 43644] Length = 652 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 29/222 (13%), Positives = 71/222 (31%), Gaps = 10/222 (4%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + I + A+ + L S+ + + Sbjct: 64 RKASCKFCSHPFKLDIALQIPPTAQDAAVTSAAAQSPPFSPSAAALEPRSVPEPVSTVAA 123 Query: 481 SLREAALLLTLINHPAILQEQYQ---ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 ++ + E + +LA++ E +L + + + E Sbjct: 124 DELNRRVIELAQERDRLRAEAEEARRQLAELAALKAERDRLEREAHNSRAQSEALRQEAE 183 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-- 595 R + + DR + +T EA + + L L + L+ +Q+ Sbjct: 184 RARAQLTELEAIRAERDRLRDEVLDLGSTLEALRDETDR--LDQLRLEHQAALVEKQRVE 241 Query: 596 ---EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + +E+++A++ + E+ L + E+ Q+ + SQ Sbjct: 242 AQAQALERRLAELPEGFDPERVLALRAERDELAAQLDRTRSQ 283 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 19/202 (9%), Positives = 60/202 (29%), Gaps = 13/202 (6%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 + + E + + A ++ +++ + + S ++ L Sbjct: 126 LNRRVIELAQERDRLRAEAEEARRQLAELAALKAERDRLEREAHNSRAQSEALR------ 179 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-LPEEIHQRLCERGFGELLK--- 551 + +L ++ E +L + + + +L L++ Sbjct: 180 QEAERARAQLTELEAIRAERDRLRDEVLDLGSTLEALRDETDRLDQLRLEHQAALVEKQR 239 Query: 552 -QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + Q + L + V + L + Q +E++ +I + Sbjct: 240 VEAQAQALERRLAELPEGFDPERVLALRAERDELAAQLDRTRSQVDELKDEIQRAGRL-- 297 Query: 611 AEKTAILISILHEVHIQIHQIE 632 E L + ++ ++ Q++ Sbjct: 298 VEMYETLRAERDDLVNRLEQLQ 319 >gi|256841353|ref|ZP_05546860.1| DNA primase [Parabacteroides sp. D13] gi|256737196|gb|EEU50523.1| DNA primase [Parabacteroides sp. D13] Length = 316 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 8/70 (11%) Query: 8 IKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 I++ I I++ + + ++ N W P +E SF N + ++ F Sbjct: 3 IQEAKQ-IKIADYLQSLGHCPVKQQGANL-----WYKSPLRNESEASFKVNTTMNSWFDF 56 Query: 66 SCHVKGDHLS 75 G+ ++ Sbjct: 57 GVGKGGNIIT 66 >gi|300794608|ref|NP_001178626.1| centrosomal protein of 120 kDa [Rattus norvegicus] gi|109507323|ref|XP_001055603.1| PREDICTED: centrosomal protein 120-like [Rattus norvegicus] Length = 989 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 32/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 648 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 705 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L +L + + ++ + ++ + + +Q S+ + + Sbjct: 706 AEYSILEGKLQQALTELESREQQLVTAETELQRERKELQLERERNLQELQDSVRRARDDC 765 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L L Q+L D L+K + + + Sbjct: 766 VHQVELERLKLKQLEEDK---HRLQQQLNDAENKYKILEKDFQQFKDQQNNKPEIRLQSE 822 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 823 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 879 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 880 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 917 >gi|119718576|ref|YP_925541.1| ATPase [Nocardioides sp. JS614] gi|119539237|gb|ABL83854.1| ATPase AAA-2 domain protein [Nocardioides sp. JS614] Length = 866 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 28/263 (10%), Positives = 82/263 (31%), Gaps = 44/263 (16%) Query: 424 YSQAIRDRLQQLFQKYITEHSGY-----------GRYWKKNARHRDQKGPSQRLMQSSLV 472 Y +RL+ + ++ G ++ L + L Sbjct: 255 YRGEFEERLKAVLEEIKAAGGQVITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELH 314 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + RE + PA+ + ++Q++ + ++ + + Sbjct: 315 MIGATTLDEYRER-----IEKDPAL-ERRFQQVFVGEPSVEDTIQILRGIQEKYEAHHGV 368 Query: 533 --LPEEIHQR--LCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA- 581 + L +R + + +D + ++ I +R+ ++ Sbjct: 369 RITDAALVAAATLSDRYISGRQLPDKAIDLIDEAASRLRMEIESSPEEIDRLRRAVERLK 428 Query: 582 -----------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA-----ILISILHEVH 625 A +R L + + E+++ + A+ E EK+ L L ++ Sbjct: 429 MEEFALAKESDEASKERLANLRQDLADHEEELRALEARWEREKSTLEGEGELRRQLDQLR 488 Query: 626 IQIHQIESQEAMIEGFGKMSGRL 648 ++ +++ + + + + GR+ Sbjct: 489 MEADRLQREGDLGKASELLYGRI 511 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 22/202 (10%), Positives = 71/202 (35%), Gaps = 2/202 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++ I + R +++ + ++++ K + + +AAL+ Sbjct: 324 YRERIEKDPALERRFQQVFVGEPSVEDTIQILRGIQEKYEAHHGVRITDAALVAAATLSD 383 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + + I + +L + S E ++ E + + + Sbjct: 384 RYISGRQLPDKAIDLIDEAASRLRMEIESSPEEIDRLRRAVERLKMEEFALAKESDEASK 443 Query: 556 Q-VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + + + A E + + +++ + + L RQ +++ + ++ +G+ K Sbjct: 444 ERLANLRQDLADHEEELRALEARWEREKSTLEGEGELRRQLDQLRMEADRLQREGDLGKA 503 Query: 615 AILI-SILHEVHIQIHQIESQE 635 + L+ + + QI + E Sbjct: 504 SELLYGRIPALEQQIEAAGAAE 525 >gi|148677958|gb|EDL09905.1| expressed sequence AU016693, isoform CRA_d [Mus musculus] Length = 987 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 40/290 (13%), Positives = 96/290 (33%), Gaps = 19/290 (6%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 633 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 690 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L +L + S ++ + ++ + + +Q S+ + + Sbjct: 691 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 750 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L L LQ+Q + + L+K + + + Sbjct: 751 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 807 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWS-----ATTEANIVDVRQGYQQALALYKRFRL-- 590 L EL ++L+ + + A E + +G +Q L+ + FR Sbjct: 808 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQVRGREQTLSSLRSFREQE 866 Query: 591 -----LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 L +Q+EE+E+ + A E E L ++ +++++ QE Sbjct: 867 SQMARLKKQQEELEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 916 >gi|297703133|ref|XP_002828505.1| PREDICTED: ankyrin repeat domain-containing protein 24-like, partial [Pongo abelii] Length = 742 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 23/198 (11%), Positives = 66/198 (33%), Gaps = 3/198 (1%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + ++ + S + R ++ R + ++ + ++ + + RE + L Sbjct: 502 SEALRQSVVPASEHRRLQEEALELRGRAASLEQEVVATGKEAARLRAELERERVCSVALS 561 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 H I+ +A + EL + E E + + L Sbjct: 562 EHERIVGTLQANVAQLEGQLEELGRRHE---KTSAEVFQVQREALFMKSERHAAEAQLAT 618 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 ++Q+R + ++ +A K+ LS++ +++ + + A Sbjct: 619 AEQQLRGLRTEAERARQAQSRAQEALDKAKEKDKKITELSKEVFNLKEALKEQPASLATP 678 Query: 613 KTAILISILHEVHIQIHQ 630 + L + ++ Q+ + Sbjct: 679 EVEALRDQVKDLQQQLQE 696 >gi|313206151|ref|YP_004045328.1| primary replicative DNA helicase [Riemerella anatipestifer DSM 15868] gi|312445467|gb|ADQ81822.1| primary replicative DNA helicase [Riemerella anatipestifer DSM 15868] gi|315023165|gb|EFT36178.1| Replicative DNA helicase [Riemerella anatipestifer RA-YM] gi|325336403|gb|ADZ12677.1| Replicative DNA helicase [Riemerella anatipestifer RA-GD] Length = 523 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 S+ +GK+ E ++ + L Y L + + Q+++ + F + Sbjct: 20 SISQGKMPPNAVDLERLVIGAFLIDKKALDNTYDLLTPEVFYDPRHQEIYRIIIKLFGDN 79 Query: 530 KYFLPEEIHQRLCE------RGFGELLKQLDRQVRDAGLWSATTEANIVD-----VRQGY 578 + Q L + G + L + + + + Sbjct: 80 TPIDILTVIQELKKQEKLNLAGGDAYIIDLTTGISSSAHIEYHARVILEKYILRSLINVS 139 Query: 579 QQAL-ALYKRFRLLSRQKEEIEK---QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + YK + + E+ +I T K + + L+S E + E Sbjct: 140 ANVIDNSYKESTDVFELLDRAEQSFFEITNGTIKKGFDTASSLVSEAIEKIKSLKDKEGL 199 Query: 635 EAMIEGF 641 + GF Sbjct: 200 SGIPSGF 206 >gi|240146492|ref|ZP_04745093.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257201397|gb|EEU99681.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 126 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 15/93 (16%) Query: 1 MNYPRDFIKDLLIHIPISNLIG-QYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSK 59 MNY + I + + + + Q + + HD S +K Sbjct: 1 MNYTQAQIDRA-NAVSLEDFLRTQGETLIKSGREYRWKE-------HD----SLTVRGNK 48 Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 F + S G + F+ G SF E+VQ L Sbjct: 49 WFRH--SQSKGGYPIDFVMEFYGKSFPEAVQML 79 >gi|218888835|ref|YP_002437699.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa LESB58] gi|218769058|emb|CAW24818.1| probable ClpA/B-type chaperone [Pseudomonas aeruginosa LESB58] Length = 902 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + A+ + E+ L Sbjct: 482 AEERERLSALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|297196720|ref|ZP_06914118.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC 25486] gi|197720081|gb|EDY63989.1| replicative DNA helicase [Streptomyces pristinaespiralis ATCC 25486] Length = 475 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 13/141 (9%), Positives = 42/141 (29%), Gaps = 10/141 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L ++ + + L + +++ + + + P + RL Sbjct: 18 AEKGVLRAMLLSKDAIADIVDTLHGHDFYRPAHDLIYTTILDLYGRGETTDPLAVAARLT 77 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++G L++ A + + + Q A + + R+ + I Sbjct: 78 QQG------SLEKAGGSAYITALVNGPSS----ARSWQTNADRVQNAAMLRRTKIAAIHI 127 Query: 603 AQVTAKGEAEKTAILISILHE 623 + + + + + Sbjct: 128 ENLASDADLDAVDRIADQAQA 148 >gi|167762587|ref|ZP_02434714.1| hypothetical protein BACSTE_00943 [Bacteroides stercoris ATCC 43183] gi|167699693|gb|EDS16272.1| hypothetical protein BACSTE_00943 [Bacteroides stercoris ATCC 43183] Length = 864 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 70/212 (33%), Gaps = 10/212 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + + +++ + + +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + +L Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDRLKL 436 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613 + L + + +Q L + + + E ++ + + +G+ K Sbjct: 437 EQIGKELAELKEQEKSYKAK--WQNEKTLVNKIQQNKVEIENLKFEADKAEREGDYGKVA 494 Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639 L + E ++H+++ +AMI+ Sbjct: 495 EIRYGKLQALNQEIEETQQKLHEMQGDQAMIK 526 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + + +DM + + +K I Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVVNEVKKSEGDI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E + ++N P L + L + + R+ + Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + D L + + + ++ + +SR+ +++E + Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425 Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627 + + + K + L E+ Q Sbjct: 426 AIKRENDRLKLEQIGKELAELKEQ 449 >gi|160931710|ref|ZP_02079104.1| hypothetical protein CLOLEP_00542 [Clostridium leptum DSM 753] gi|156869355|gb|EDO62727.1| hypothetical protein CLOLEP_00542 [Clostridium leptum DSM 753] Length = 820 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 47/143 (32%), Gaps = 7/143 (4%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 I A L+ ++Q + E + L + ++ + ++ Sbjct: 331 IEKDAALERRFQPVMVGEPTVQEAAAILKGLRDRYEAHHKV-------KITDEAIEAAVE 383 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 R + D L + + + + + L + +E+E++ A + Sbjct: 384 LSSRYISDRYLPDKAIDLIDEAASRVRLRCYTVPDDLQQLEEKSKELEQEKAAAVNSQDF 443 Query: 612 EKTAILISILHEVHIQIHQIESQ 634 E+ A L + + Q+ + +Q Sbjct: 444 ERAASLRDEVRHLKQQLEEQRNQ 466 >gi|300871877|ref|YP_003786750.1| replicative DNA helicase [Brachyspira pilosicoli 95/1000] gi|300689578|gb|ADK32249.1| replicative DNA helicase [Brachyspira pilosicoli 95/1000] Length = 465 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/146 (12%), Positives = 44/146 (30%), Gaps = 4/146 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +LL ++ + + ++ + + + L+ + E + L Sbjct: 10 AEESLLGAMLQNSQAISAAISKIVSKDFYSERNRLLYECILEMHNRGIAVNAETTLRYLK 69 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E G + + Q D + + + Y + +A R L ++I+ Sbjct: 70 ENGLFDKIIQNDEVYLTKII----DGSPFHQNAKYYAEIIAEKSLLRDLITATQDIQNSA 125 Query: 603 AQVTAKGEAEKTAILISILHEVHIQI 628 + E + EV + Sbjct: 126 YEAKDSETKEIADFAEKRIFEVTQRR 151 >gi|307214547|gb|EFN89532.1| Myosin heavy chain, non-muscle [Harpegnathos saltator] Length = 1830 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 95/283 (33%), Gaps = 6/283 (2%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 + R Y + EK ++ ++ E E + ELE L + I+ Sbjct: 731 HSAQEYERKYQQAIEEKTMLAEQLQAEVELCAEAEEMRARLAARKQELEEILHDLEARIE 790 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +++ R + +LQ + +K + Q + ++ L + Sbjct: 791 EEEERSAALNQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSED 850 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531 + + L+E +L N + + +E L+ ++ + + L L D +++ Sbjct: 851 TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 910 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + E L + QV + L E + V + A + + Sbjct: 911 VDRSKRKVETEVSDLKEQLAERKTQVEELQLQLGKREEELNQVMAKMDEEGAAKAQAQKA 970 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R+ E ++ + + E + +++ ++ ++++ Sbjct: 971 LRELESQLAELQE-DLEAEKAARGKAEKLRRDLNEELEALKNE 1012 Score = 41.8 bits (96), Expect = 0.35, Method: Composition-based stats. Identities = 32/335 (9%), Positives = 97/335 (28%), Gaps = 36/335 (10%) Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388 R ++ + + +D + + + K + L + Sbjct: 1457 RDFEAELEDERKQRAAAVAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQAQIKDCT 1516 Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKD-------------------QKLRYYYSQAI- 428 + DE A + + ++ + R + + Sbjct: 1517 RETEEARAARDELAAASKETERKVKSLEADLMQLTEDFASSERARRTAENERDELQEEVN 1576 Query: 429 --RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 ++ + + + ++ + + + + E + Sbjct: 1577 NNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIMIEQLTTDLATERS 1636 Query: 487 LLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L +H +L+ Q +EL + + K + + + + + Sbjct: 1637 TTQKLESHKTLLERQNKELKAKLTELETAQRAKTKATIQQLESKINSLDEQLEIEAKERF 1696 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 ++ ++L+++++D L N ++ QA + R + L RQ +E E++I++ Sbjct: 1697 AQQKINRKLEKKLKDLSLQLEEERRNSDQYKE---QAEKVNARMKALKRQLDEAEEEISR 1753 Query: 605 -------VTAKGEA--EKTAILISILHEVHIQIHQ 630 + + E L L + ++ + Sbjct: 1754 HKTMKRKAQREMDDMIESHEELTRELTHLKNKLRR 1788 >gi|114615146|ref|XP_527845.2| PREDICTED: CCAAT displacement protein [Pan troglodytes] Length = 1515 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384 >gi|217076913|ref|YP_002334629.1| replicative DNA helicase [Thermosipho africanus TCF52B] gi|217036766|gb|ACJ75288.1| replicative DNA helicase [Thermosipho africanus TCF52B] Length = 447 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 44/140 (31%), Gaps = 9/140 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A++ +++ P ++ + + +N +++ + + E I RL Sbjct: 10 AEQAVIGSILIDPEAIENVISIVRSEDFYDNRHVEIFKAIEELYDENIPIDVISICDRLK 69 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +G +LD + + + Y Q + R L + + Sbjct: 70 TKG------KLDMVGGELYVAQLADGVPTSAHAETYAQIVRDKSILRSL---ISAASRVV 120 Query: 603 AQVTAKGEAEKTAILISILH 622 + + + ++ + Sbjct: 121 EEAMSDNDVDEILDNAERVI 140 >gi|321400107|ref|NP_001189472.1| protein CASP isoform d [Homo sapiens] gi|42793995|gb|AAH66592.1| CUX1 protein [Homo sapiens] gi|119570613|gb|EAW50228.1| cut-like 1, CCAAT displacement protein (Drosophila), isoform CRA_b [Homo sapiens] Length = 1516 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQL 338 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384 >gi|47213005|emb|CAF95397.1| unnamed protein product [Tetraodon nigroviridis] Length = 2594 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 4/196 (2%) Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 S + ++ H Q ++ + + S + +E + L + + Sbjct: 498 RASQAAGDHQTSSHHYSQLQNVPQVPSEQEDRKERSFQTQPQEQEVQAHLRAEQELQAHR 557 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD--RQVRD 559 +EL ELQ L + ++ +E+ + ++L RQ Sbjct: 558 QEELQAH--RQQELQAHRQELQAHRQQELQAHRQELQAHRQQELQAHRQQELQAHRQEEL 615 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 +A+ Q ++Q R L ++E++ Q ++ Sbjct: 616 QAHRQQELQAHRQQELQAHRQEELQAHRQEELQAHRQELQAHRQQELQAHRQQELQAHRQ 675 Query: 620 ILHEVHIQIHQIESQE 635 L ++ QE Sbjct: 676 ELQAHRQELQAHRQQE 691 >gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] Length = 744 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 13/87 (14%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTP--SFHCNDSKGFYYCFSCHV-KGDHLSFLSALLGCS 84 R+ V GD P SF CN G + F+ GD +S ++A Sbjct: 33 KRQGREMVAGDIHG--------NPGKSFSCNTETGVWSDFATGESGGDVISLVAAQEELG 84 Query: 85 FIESVQRLAAIAGVPLPVVDPKIEKKE 111 ++ + +A G+ V PK ++K+ Sbjct: 85 QAKAARMIAEEIGLAP--VTPKPKRKD 109 >gi|291531754|emb|CBK97339.1| hypothetical protein EUS_23620 [Eubacterium siraeum 70/3] Length = 400 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 25/132 (18%) Query: 1 MNYPRD------FIKDL-LIH-IPISNLIGQY--VDWDRRKTNAVKGDYWACCPFHDEKT 50 M++ + + + + + + + + Y +K Sbjct: 1 MSFSKSKPSNYVTKEQIERARNVDMVEFLERTEGFSVKKSGNG-----YRC------DKH 49 Query: 51 PSFHCNDSKGFYYCFSCHVKGD-HLSFLSALLGCSFIESVQRLAAIAGVPL---PVVDPK 106 S + + +Y S G+ ++F + G SF E+V+ L + + Sbjct: 50 DSLFITNDRRGWYWNSRDEGGNNAIAFCMKIYGQSFTEAVKSLCGDIQIEYTPNKITSKP 109 Query: 107 IEKKEKIQTDLI 118 K+K LI Sbjct: 110 SVSKDKESNRLI 121 >gi|194212722|ref|XP_001502736.2| PREDICTED: similar to centrosomal protein 164kDa [Equus caballus] Length = 1404 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 34/317 (10%), Positives = 98/317 (30%), Gaps = 47/317 (14%) Query: 365 CYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 A EK +L + ++ E + A LE + + + + Sbjct: 714 KEEMEASEKREQAALNAEKEKALQQLREQLEGERKEAVAALEKEHRAELERLSSSLEAKH 773 Query: 424 --YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +++ ++++ QK + ++ A+ + + S L++ K + Sbjct: 774 RQVVSSLQKKMEEAQQKEEAQLQESLGRAEQRAQQKVHQVLEYEQELSGLLREKRQEVER 833 Query: 482 LREAALLLTLINHPAILQEQYQELADIR-------YDN-----NELQKLWSFLFSDFVEQ 529 E L H ++ E ++ + L++ + Sbjct: 834 EHERKLDKMKEEHRQVVAEAREQYEAEERKQRAELLGHLTGELERLRRAHERELETMRQD 893 Query: 530 KYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + E++ +R E+ +L +L+ + +D + R+ QQ L + ++ Sbjct: 894 QDRQLEDLRRRHREQERKLQDLEVELETRTKDVKATLTKLDIQEETARKEKQQLLDVQRK 953 Query: 588 ----------------------------FRLLSRQKEEIEKQIAQVTAKGE--AEKTAIL 617 R L R +E++ + ++ ++ + ++ L Sbjct: 954 VALESEEAAATHQHLEEAKKEHTHLLESNRQLRRILDELQARKLELESQVDLLQTQSQRL 1013 Query: 618 ISILHEVHIQIHQIESQ 634 + ++ + + Sbjct: 1014 QKRVSDLEAEAQRKRDT 1030 Score = 41.8 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 82/226 (36%), Gaps = 26/226 (11%) Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + Q +R+ L+ L + R + + +++ S++ Q++L K Sbjct: 678 AEQEASLQRLREELESLQKAERASLEQRNR--QMLEQLKEEMEASEKREQAALNAEKEKA 735 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI- 537 LRE + E+ + +A + E + L S + + + Sbjct: 736 LQQLRE-----------QLEGERKEAVAALE---KEHRAELERLSSSLEAKHRQVVSSLQ 781 Query: 538 -----HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 Q+ E E L + +++ + E + + + +Q + + R L Sbjct: 782 KKMEEAQQKEEAQLQESLGRAEQRAQQKVHQVLEYEQELSGLLREKRQEVE-REHERKLD 840 Query: 593 RQKEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635 + KEE + +A+ + EAE+ A L+ L ++ + +E Sbjct: 841 KMKEEHRQVVAEAREQYEAEERKQRAELLGHLTGELERLRRAHERE 886 >gi|329913485|ref|ZP_08275954.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480] gi|327545343|gb|EGF30578.1| Replicative DNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 483 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 28/209 (13%), Positives = 66/209 (31%), Gaps = 22/209 (10%) Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS---LREAALLLTLINHPAILQEQ 501 N+ R P R ++ + P E ++L L+ A Sbjct: 2 NKRERSDSNSESRSDSRPDFRSDSRPDIQLDALRVPPHSIEAEQSVLGGLLLDNAAWDRI 61 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + + ++ + K + + L G E + L +A Sbjct: 62 ADFVHQDDFYRYDHRLIFQHIVKLINGSKPADVITVFESLTSTGKAEEVGGL--SYLNAL 119 Query: 562 LWSATTEANIVDVRQGYQQALALYK---------------RFRLLSRQKEEIEKQIAQVT 606 + + ANI + + L K + + + + +E E +I + Sbjct: 120 AQNTPSAANIRRYAEIVRDRGVLRKLITVADEISGQAFNPQGKEVKQMLDEAESKIFAIA 179 Query: 607 AKGE--AEKTAILISILHEVHIQIHQIES 633 +G A+ + +L +V +I ++ + Sbjct: 180 EEGSRGAQGFQEIQPLLTQVVERIDELYN 208 >gi|258517413|ref|YP_003193635.1| replicative DNA helicase [Desulfotomaculum acetoxidans DSM 771] gi|257781118|gb|ACV65012.1| replicative DNA helicase [Desulfotomaculum acetoxidans DSM 771] Length = 441 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 54/162 (33%), Gaps = 11/162 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ + E +++ ++ + + + ++ + + + ++ + Sbjct: 4 KIPPQNMEAEQSVIGSVFLDKEAIYKVMRIISPDDFYSESHKLIYEVILDLNDNSAAIDL 63 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L +RG L ++ A L + + A + L R Sbjct: 64 LTVTESLRQRGH---LDKIGGVTYIASLPGMVPTSAN-------VEYYAKIVEEKSLLRT 113 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + +IA ++ +G E L+ + +++ S A Sbjct: 114 LISLASRIANMSYEGS-ENAQRLMDEAERMILELSSRRSASA 154 >gi|170742232|ref|YP_001770887.1| DnaB domain-containing protein [Methylobacterium sp. 4-46] gi|168196506|gb|ACA18453.1| DnaB domain protein helicase domain protein [Methylobacterium sp. 4-46] Length = 482 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 11/122 (9%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ALL ++N+ L +A + E ++ + + P + L + Sbjct: 24 EQALLGAILNNNDALSLVTALVAPEHFFVPEHATIFQQIAAMVGAGLQASPITLKPYLGD 83 Query: 544 RGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 G L + L R +A S GY Q + R L R ++++ Sbjct: 84 ADLGGLTVGEYLARLAAEATTVSGAP---------GYAQIIRSLATRRDLIRAAHRLQER 134 Query: 602 IA 603 Sbjct: 135 AR 136 >gi|124002875|ref|ZP_01687726.1| replicative DNA helicase [Microscilla marina ATCC 23134] gi|123991525|gb|EAY30933.1| replicative DNA helicase [Microscilla marina ATCC 23134] Length = 195 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 11/130 (8%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + EA L LI PA + + L + ++++ + F + Sbjct: 13 PPQAIDIEEAVLGAILIEQPAFM-QVIDLLQPDYFYKPAHKEVYQAILELFAQANPVDML 71 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + Q+L + G +L+ + T+ N + + L + + R+ Sbjct: 72 TVTQQLRQTG------KLEMAGGPTFVMKLTSMVNSSANIEYHAHILV----EQAIKRRL 121 Query: 596 EEIEKQIAQV 605 EI +I + Sbjct: 122 IEISSKIRKA 131 >gi|58269356|ref|XP_571834.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57228070|gb|AAW44527.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1057 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 28/242 (11%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + +L K E S + D + R L + + Sbjct: 594 RDQQALQLEEARAELRDKDDREKSRLIKASHPEENEEDGEVEKMRKEMKELQRKVGEMEG 653 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF-----LPE 535 E L L+E ++EL +++ +E+Q L + L S + + + Sbjct: 654 KEEEVQALR------QELEEVHRELEEVKDQGSEVQALRTELSSAHHQLDEYELMKADVD 707 Query: 536 EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + L + + ++ + ++ A E DV L + Sbjct: 708 ALQKELADLRHHVQELKQVKAADEEEIETLLDQVAKLEVESRDVEDLKYHFDQLKQVKTA 767 Query: 591 LSRQKEEIEKQIAQVTAKGEAE-----KTAILISI-------LHEVHIQIHQIESQEAMI 638 + E + +QI ++ A+ E K L V +++ ++ S+E + Sbjct: 768 NEEEIENLLRQIEKLKAERRQEDEWKSKVEELSKRVDMEGMRRQNVELELEEVRSREIKL 827 Query: 639 EG 640 EG Sbjct: 828 EG 829 Score = 39.1 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 11/120 (9%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + E + L+++ L A + D + L Sbjct: 561 AAQSEARDLEIRLAKALADAAATSRQLEEVKNSRDQQALQLEEARAELRDKDDREKSRLI 620 Query: 584 ---------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ +E+++++ ++ G+ E+ L L EVH ++ +++ Q Sbjct: 621 KASHPEENEEDGEVEKMRKEMKELQRKVGEME--GKEEEVQALRQELEEVHRELEEVKDQ 678 >gi|15606635|ref|NP_214015.1| replicative DNA helicase [Aquifex aeolicus VF5] gi|2983861|gb|AAC07414.1| replicative DNA helicase [Aquifex aeolicus VF5] Length = 468 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 8/119 (6%) Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-QKYFLPEEIHQ 539 E A+L +++ P + + L + + +E + L+ L + + E I Sbjct: 11 ESAERAVLGSMLEDPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSEYGNKLDFVLIKD 70 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L ++ L +++ L EA D + + + R + + E+ Sbjct: 71 HLEKKN-------LLQKIPIDWLEELYEEAVSPDTLEEVCKIVKQRSAQRAIIQLGIEL 122 >gi|87119504|ref|ZP_01075401.1| DnaB helicase [Marinomonas sp. MED121] gi|86164980|gb|EAQ66248.1| DnaB helicase [Marinomonas sp. MED121] Length = 458 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 69/192 (35%), Gaps = 20/192 (10%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + S + KL E +++ L+ P + + + + E +++++ + Sbjct: 1 MENSDVSAIKLPPYSVEAERSVVGGLMLDPNAWDKVSELVMADDFYRPEHKQIFAVIAKL 60 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 E + I ++L +RG L+ + + AT + + + ++ Sbjct: 61 ADESEPIDVVTIGEKLDKRG---ELEDVGGMTYLIEMAEATPSSANIASYADIVRERSVL 117 Query: 586 KRFRLLSRQK----------------EEIEKQIAQVTAKGEAEKTAILISILHEVH-IQI 628 +R + + +E E++I Q+ G+ + + S + +I Sbjct: 118 RRLITTTNEISTRAFHPEGLTAAEVLDEAERKIFQIAEGGDKKGGPRIASDILSATVDKI 177 Query: 629 HQIESQEAMIEG 640 ++ QE I G Sbjct: 178 DELYHQEGAITG 189 >gi|326955267|gb|AEA28962.1| DnaB domain protein helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 431 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 23/214 (10%), Positives = 54/214 (25%), Gaps = 3/214 (1%) Query: 425 SQAIRDRLQQLF--QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Q + R+ + ITE + + + + S + Sbjct: 175 LQRLEGRVATSHAGRVSITEALSGAPPVAELPQRGEPRTSVTAPAALKTAAVPSSAEAER 234 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A + + P + + L + + + + W + + + Sbjct: 235 AERAFIGACLVAPEVRSAATEWLRPEDFASPDAAQTWRVVLDMTQRGDPVDFVLVAVEVE 294 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L+ D E + + R+ R + E++ + Sbjct: 295 TARAVAHAAGLELVGYDPSTLHRLAERGDQLGGHRAAEVIRRAALQRITHRARTELD-AV 353 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 A+ A G + E ++ Q A Sbjct: 354 AENRAFGSRALLQNAQQTVSEAQQTSGRLSGQSA 387 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 58/172 (33%), Gaps = 24/172 (13%) Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH----------QRLCE 543 P +++ L +++ + ++ L + + + +++ + Sbjct: 26 EPGRIRDVSDWLESADFEHWAHRAIYQTLTGLIADGRPVVLQDLPGILARGEYHDAHVDS 85 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF---RLLSRQKEEI-- 598 G G L + AT + D + Y R + RQ + Sbjct: 86 TGSGPL--SAPALHTLLSMTPATPDRAHRDQGGTARSEHVRYARIVLDNSVRRQVAAVGA 143 Query: 599 -EKQIAQVTAKGEAEKTAILIS-ILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 +Q+ + A+ + + +A + L EV + ++E + A +GR+ Sbjct: 144 RIEQLGRTAAQHDDQHSADPMGPALAEVRAALQRLEGRVAT-----SHAGRV 190 >gi|300724711|ref|YP_003714036.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus nematophila ATCC 19061] gi|297631253|emb|CBJ91948.1| replicative DNA helicase; chromosome replication; chain elongation [Xenorhabdus nematophila ATCC 19061] Length = 459 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 10/154 (6%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + KL E ++L L+ + + + + ++++S + Sbjct: 3 EPKDRQVEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTGNDFFSRPHRRIFSEMQR 62 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 K + + L EL +LD A L + Y + Sbjct: 63 LLETGKPIDLITLSESL------ELNGELDNVGGFAYLAELSKNTPSAANINAYADIV-- 114 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 R R + R + +IA + + L+ Sbjct: 115 --RERAVVRDMIAVANEIADAGYDPQGRTSEELL 146 >gi|260586979|ref|ZP_05852892.1| putative toprim domain protein [Blautia hansenii DSM 20583] gi|260542663|gb|EEX23232.1| putative toprim domain protein [Blautia hansenii DSM 20583] Length = 635 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 43/114 (37%), Gaps = 15/114 (13%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + ++L YV R +Y + S N K + Sbjct: 2 EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTD 116 Y FS + G + F+ G SF E+V+ L G + + + +K++ + Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGETNRRTDKEDAGRQK 102 >gi|225459089|ref|XP_002283825.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 1293 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549 + + ++ ++ EL ++ + +L++ + + L ++L E + L Sbjct: 546 LEYTSLQEKFDMELKEL---DKKLEQKEAEMKRFASADTSVLKLHYEKKLLELEQEKKAL 602 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 K+++ D S+T++ +++ Y Q L + ++ ++K++ + Q+ + K Sbjct: 603 QKEIEELRHDLASISSTSDDGAQKLKEDYLQKLNVLEKQVSELKKKQDAQSQLLRQKQKS 662 Query: 610 EAEKTAILISILHEVHIQIHQIE 632 + E L + + Q Q++ Sbjct: 663 D-EAAKRLQDEIQRIKSQKVQLQ 684 >gi|213405729|ref|XP_002173636.1| myosin type-2 heavy chain 2 [Schizosaccharomyces japonicus yFS275] gi|212001683|gb|EEB07343.1| myosin type-2 heavy chain 2 [Schizosaccharomyces japonicus yFS275] Length = 1892 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 76/211 (36%), Gaps = 17/211 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 QK ++ +G+ + MQ + + + E + L+ + Sbjct: 1452 LQKSLSLGAGFQHKNARARNGYQSIKAGVDPMQYKKELERSLQAMAKAER--IQNLVRNQ 1509 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCERGFGELLKQL 553 L++ + L + + + Q+L+ + E + + + L + +LL Q+ Sbjct: 1510 --LEDTEESLRENQKVCAKYQQLYLAAEAKLREVEDVIEEKDSLMAELQRQR-DKLLHQV 1566 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--------EEIEKQIAQV 605 + E ++ + YQ+ LAL KR + R+K + K+ ++ Sbjct: 1567 EDFYSTRTQDLEDREKQEQNIYERYQKELALLKRQAEVEREKNLELRNESRLLNKEFGEL 1626 Query: 606 TAKGEAEKTAI--LISILHEVHIQIHQIESQ 634 K + + L+ E+ +I ++ Q Sbjct: 1627 RVKMDEAVLSRSNLMRENTELQKEIKRLSRQ 1657 >gi|149692354|ref|XP_001500608.1| PREDICTED: similar to Cingulin-like protein 1 (Paracingulin) (Junction-associated coiled-coil protein) [Equus caballus] Length = 1297 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 12/279 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + +L L + + E + + L +D+ Sbjct: 967 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1026 Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L R Q ++D +L K + + + + + +S + + Sbjct: 1027 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLIKQMEDKVSQLEMELEEERSNSDLLSERI 1086 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QK 530 + + + L+ A+ Q+ + + N +L+ L + Q Sbjct: 1087 ARSREQMEQIRNELLQERAVRQDLECDKISLERQNKDLKSRIVHLEGSYRSSKEGLVVQM 1146 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E+ RL QL + + + + + + Q L R + Sbjct: 1147 EARIAELEDRLESEERDRASLQLSNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKA 1205 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + RQ EE E++I ++ + +K + +V+ Q+ Sbjct: 1206 MKRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1242 Score = 39.5 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 13/150 (8%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 E L E+ +L L + Q+ E + + EL Q D +V Sbjct: 602 SEVKDLLEQKNKLTTEVAELQRQLQLEVKNQQNIKEE---RERMKANLEELQSQHDTKVE 658 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK----- 613 + + E + ++R+ ++ + + +++ Q++++ + ++ K Sbjct: 659 ENSVLQQRLEESEGELRKNLEELFQVKMEREQHQTEIRDLQDQLSEMHDELDSAKRSEDR 718 Query: 614 -----TAILISILHEVHIQIHQIESQEAMI 638 L+ ++ + E QE ++ Sbjct: 719 EKGVLIEELLQAKQDLQDLLIAKEEQEDLL 748 Score = 37.9 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 39/331 (11%), Positives = 100/331 (30%), Gaps = 13/331 (3%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++R L + D + L + + ED R Sbjct: 694 EIRDLQDQLSEMHDELDSAKRSEDREKGVLIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 752 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423 TA + + E + D + E R +E K + + + Sbjct: 753 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNSSEQTQ 812 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +R + Q + + + G + + L+K ++ L Sbjct: 813 VEAKVRMKALQEENERLRKSLGELECSVARLQRQIADAKGDEAKAKELLKKCEAEMQQLE 872 Query: 484 EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 EA + + + E ++ E ++L L + +++ + Sbjct: 873 EALVHARKEEKEAMSARRTLESELEDAQRNLSRATQEQKQLSEKLKDESEQKEQLRRLKN 932 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + +++L +++ D S T+ + + Y++ + + RQ +E Sbjct: 933 EMENERWHLDKTIEKLQKEMADIVEVSRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 990 Query: 598 --IEKQIAQVTAKGEAEKTAILISILHEVHI 626 +E + +++TA ++ ++ L + Sbjct: 991 KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1021 >gi|46205184|ref|ZP_00048890.2| hypothetical protein Magn03002143 [Magnetospirillum magnetotacticum MS-1] Length = 261 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 8/78 (10%) Query: 41 ACCPFHDEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CP KT F +D +G + C C GD +LG F E LA G Sbjct: 33 GPCPICGGKT-RFRYDDKEGRGTWICNHCGA-GDGADLAMKVLGIDFKE----LAERVGP 86 Query: 99 PLPVVDPKIEKKEKIQTD 116 + V P KK++ D Sbjct: 87 LIGEVKPTAPKKDRSHDD 104 >gi|116053810|ref|YP_788247.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa UCBPP-PA14] gi|296386574|ref|ZP_06876073.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa PAb1] gi|115589031|gb|ABJ15046.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa UCBPP-PA14] Length = 902 Score = 47.2 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + A+ + E+ L Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGAPLGEGEARLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|145479823|ref|XP_001425934.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124393006|emb|CAK58536.1| unnamed protein product [Paramecium tetraurelia] Length = 590 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 24/268 (8%), Positives = 85/268 (31%), Gaps = 14/268 (5%) Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 S+ +E + + E + + Y + ++ + + Sbjct: 157 TNASMKSQYQSIMKENKRCQQQLGTSQNEFYKLSEKFNQFESMYHSKIKYYEELQKQFEL 216 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH 494 Q+ ++ R Q ++ Q + + + L Sbjct: 217 EQQREKFQYQELVRELHLLENENQQLYKQLQITQFEKEEKDKKIQDEQNQLKL------- 269 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQ 552 L + E + + L+ ++ + + Q L ++ ++ ++ Sbjct: 270 --ELNKIQDENKILEKSHRTLKIEKKVIYDN-QNHIKQKINRLEQELNQKEQIIKQMEQE 326 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE-- 610 L ++ +G + +++ L ++ +++E+QIA++ + Sbjct: 327 LQEKILIINQLENIAYGLKQSAEEGKENTNQTLLQYKDLMKECDQLEQQIARLEQDNDIV 386 Query: 611 AEKTAILISILHEVHIQIHQIESQEAMI 638 ++ ++ L ++ + Q++ + A++ Sbjct: 387 KKEYEQILYELKDLQQENRQLQERNALL 414 >gi|158520023|ref|YP_001527893.1| replicative DNA helicase [Desulfococcus oleovorans Hxd3] gi|158508849|gb|ABW65816.1| replicative DNA helicase [Desulfococcus oleovorans Hxd3] Length = 471 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 56/185 (30%), Gaps = 16/185 (8%) Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQEQYQELA 506 + K + + S + +L + E ++L T++ P L + + LA Sbjct: 2 EKAAPKKKGRPKAGAAGAVPSDPLLHRLPPQNIEAEESILSTILIDPDPSTLFDVLEVLA 61 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 + + QK+++ + + + + L E +L+ A L Sbjct: 62 PEDFYKSAHQKIFAAIVRLVEKNEPVDLVTVKNTLAES------DELEPIGGAAYLAGLV 115 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ-----VTAKGEAEKTAILISIL 621 A + Y + K L R E + + +G + I + Sbjct: 116 DSAPYAANARHYADII---KNKASLRRMIENANEISRRCFDNPSDVEGVIDFAERAILEV 172 Query: 622 HEVHI 626 E Sbjct: 173 AEQKA 177 >gi|268567159|ref|XP_002639906.1| Hypothetical protein CBG08234 [Caenorhabditis briggsae] gi|187032804|emb|CAP28100.1| hypothetical protein CBG_08234 [Caenorhabditis briggsae AF16] Length = 2147 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 20/189 (10%), Positives = 57/189 (30%), Gaps = 17/189 (8%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 P S+ + K K+ E ++ L E + ++ Sbjct: 1691 PNVPVPNVPDAHSDGSTQIDHKELKQMWDLERQVIRHLKRENITFDEFIE--------SD 1742 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ-LDRQVRDAGLWSATTEANIV 572 + + + FL F I ++ + + ++ L + E+ Sbjct: 1743 DARNMHQFLVDTFKNMDLQYFAFILEKAIQETHEQSWQETLQLRQAAEEARLLLEESRKQ 1802 Query: 573 DVRQ--GYQQALALYKRFRLLS------RQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +R+ ++ + RF + + ++++I Q+ E + + Sbjct: 1803 HLREYGELRERMETISRFEAFEVQVACDSRIKSLKERITQLNEDRELLLREEVKEERARL 1862 Query: 625 HIQIHQIES 633 Q+ +++ Sbjct: 1863 QRQLKEMKE 1871 >gi|326335376|ref|ZP_08201564.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692441|gb|EGD34392.1| DNA primase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 291 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 70/198 (35%), Gaps = 9/198 (4%) Query: 13 IHIPISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKG 71 I I N++ + K N+ Y+A F +EK PS N K + F K Sbjct: 8 TQISIRNVLESF-SLFPSKGNSKTAFYFA---FDREEKAPSLLVNFIKNIAFDFGTGKKY 63 Query: 72 DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHS 131 D +S + + CS E+++ L+ + K E L + EV + Sbjct: 64 DIVSLVQGIKLCSVSEALEYLSQ-FDFSFNEQICNVTKDENKYEIL-SISEVKHNALIQY 121 Query: 132 LKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLID 191 LK R + + L E + F +G+ + E + + + + Sbjct: 122 LKERRIENNIHLLKEIHYKISDKKYFGIGF--KNDTGGYEVRNKYSKICIGRKDITTIKN 179 Query: 192 GDNSATSYDRFRNRLIFP 209 N+ ++ F + L F Sbjct: 180 KSNNLRIFEGFMDYLSFI 197 >gi|312863336|ref|ZP_07723574.1| conserved hypothetical protein [Streptococcus vestibularis F0396] gi|311100872|gb|EFQ59077.1| conserved hypothetical protein [Streptococcus vestibularis F0396] Length = 362 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I+ + I ++ G Y P HD SF + FS Sbjct: 4 IEAVKHKA-ILDVAGS---LGYSFRRLSGQVYEH--PEHD----SFKIFADTNTFKWFSR 53 Query: 68 HVKGDHLSFLSALLGCSFIESVQRL 92 ++GD + F+ + G SF E++ L Sbjct: 54 DIQGDVIDFVQLVAGVSFKEALSYL 78 >gi|296193859|ref|XP_002744704.1| PREDICTED: centrosomal protein of 120 kDa isoform 1 [Callithrix jacchus] Length = 986 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAETKYKILEKEFQQFKDQQSNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTEQQELLDIRNELNRLRQQE 914 >gi|161505147|ref|YP_001572259.1| hypothetical protein SARI_03284 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866494|gb|ABX23117.1| hypothetical protein SARI_03284 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1100 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 E + ++ + + +QS+L + K R + N P Sbjct: 10 LAATAPEVKQITQELEQAKAAKPPQPEVVEALQSALNALEERKGSLERAKQYQYVIDNFP 69 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 70 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERAREIADS 129 Query: 550 LKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQALALYKRFRLLSRQKEEIE------ 599 L QL +Q DA E A Q L++ L +E+E Sbjct: 130 LSQLPQQQNDARRQLNVIERRLGAAGGSASLSLAQNLSMQAESAKLKALVDELELAQLSA 189 Query: 600 ---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 190 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 229 >gi|153971637|ref|YP_001393155.1| putative conjugative transfer protein TraI [Vibrio vulnificus] gi|152955138|emb|CAL25489.1| putative conjugative transfer protein TraI [Vibrio vulnificus] Length = 1924 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 42/363 (11%), Positives = 93/363 (25%), Gaps = 23/363 (6%) Query: 59 KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 +G++ ++ KG ++ + + G S+ E++ A L + ++ L Sbjct: 1585 RGYFKDYTTGEKGSLINLMMSHNGMSYKEAM----NEAHKMLNEPEKYKLEENSKHEKL- 1639 Query: 119 RLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGF 178 L + + S + + ++ Sbjct: 1640 -------------LSTTPRHIAKFEERAKEYISQSQPINNTLAQTYLNNLGINNIENDNV 1686 Query: 179 SEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPE 238 + + + + + I + TL S + Sbjct: 1687 KFHPSVYSSEDKAYHPAMLTNIHNKQGETKAIEVTYLDSQGNRDNTLDINPRTLGTKSKQ 1746 Query: 239 TILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL 298 FH+G+NL N ++ S + II V D+ ++ ++ + + Sbjct: 1747 LTNFHQGENL-NTTIISTSIENSFLIRDQTQGQIDIINVNHKNDIQNINIDELRQNIIIV 1805 Query: 299 GTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGED 358 +I+ F+G D + + + + R N V D Sbjct: 1806 LNQGNHDLNP---NNIEKIIENFNGRDIQFMSDDNLKEDIKSCIEKLERDNSVHDIELSD 1862 Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 S + + L ET+ S E I + Sbjct: 1863 THSTHQESELD-TLNFDEKKETDSQSLEHFETKEYSPQQEMNFEHQEKESDWEDREIDRE 1921 Query: 419 KLR 421 R Sbjct: 1922 LER 1924 >gi|254243199|ref|ZP_04936521.1| hypothetical protein PA2G_04002 [Pseudomonas aeruginosa 2192] gi|126196577|gb|EAZ60640.1| hypothetical protein PA2G_04002 [Pseudomonas aeruginosa 2192] Length = 902 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + A+ + E+ L Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|326917541|ref|XP_003205057.1| PREDICTED: transcription initiation factor TFIID subunit 4B-like [Meleagris gallopavo] Length = 750 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 55/157 (35%), Gaps = 14/157 (8%) Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERG 545 L + ++ + AD + +E L + + + + Sbjct: 517 ILATNSELIGTVIRSCADEPFLFSE--ALQKKILNIGKRHDIMELNSDVVNLISHATQER 574 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---I 602 LL++L + ++ I V + L ++ L +++++ E++ + Sbjct: 575 LRGLLEKLTVIAQHRVSTHKGSDTYI--VSSDTRAQLKFLEKLDHLEKRRKDEEEREMLL 632 Query: 603 AQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636 ++ E + L + E+ ++ Q++ +EA Sbjct: 633 RAAKSRSNKEDPEHLRLKQKVKEMQQLELAQMQQREA 669 >gi|322437298|ref|YP_004219510.1| replicative DNA helicase [Acidobacterium sp. MP5ACTX9] gi|321165025|gb|ADW70730.1| replicative DNA helicase [Acidobacterium sp. MP5ACTX9] Length = 462 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%) Query: 471 LVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK 530 + E +L ++ P + + L + + +K++ + Sbjct: 9 NPEDDSRPASLHAEQTILGAMLVEPLAIVDATMLLKADDFSLDSHRKIYEVMIHLSEVGY 68 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + + L +R KQLD L + + Y + + R + Sbjct: 69 AVDIVTVSEELSKR------KQLDSVGSRPYLAGLSEGLPRKLSIESYVRIV----RDKS 118 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 L RQ + ++++ I +L++V ++ +I S+ A+ GF +S Sbjct: 119 LMRQLMS----VCDAGMMEASDQSLEAIDVLNQVESRLMEI-SEHAITGGFSGIS 168 >gi|238918280|ref|YP_002931794.1| replicative DNA helicase, [Edwardsiella ictaluri 93-146] gi|238867848|gb|ACR67559.1| replicative DNA helicase, putative [Edwardsiella ictaluri 93-146] Length = 456 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 6/115 (5%) Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E A+L L+ E LA + + ++ + F + Sbjct: 7 PHSAEAEQAVLGGLMLDNDRWDEVVLLLAPDDFFVGWHRAIYRAMAELFGASLPLDLITL 66 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 R+ G LL+++ A L T A Y +A R R L Sbjct: 67 SDRMENAG---LLERVGGFAYLAELSKNTPSAA---NILAYAGVVAEKSRLRKLQ 115 >gi|220914616|ref|YP_002489925.1| replicative DNA helicase [Arthrobacter chlorophenolicus A6] gi|219861494|gb|ACL41836.1| replicative DNA helicase [Arthrobacter chlorophenolicus A6] Length = 461 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 13/161 (8%), Positives = 45/161 (27%), Gaps = 13/161 (8%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E ++L ++ + + + L + + ++ + + + Sbjct: 17 ASRKPPQDIPAEQSVLGGMMLSKDAIADVVEILRGQDFYRPAHETIYEAIIDLYGRGEPA 76 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + L + + ++ L A GY + R + Sbjct: 77 DAVTVSDELTK---RAEINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA---ERAVL 126 Query: 593 RQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQ 630 R+ +I Q+ + + + ++ V + Sbjct: 127 RRLVNAGTKIVQLGYGSDGEVEDLVNQAQAEVYAVAERRTA 167 >gi|27468396|ref|NP_765033.1| LtrC-like protein [Staphylococcus epidermidis ATCC 12228] gi|27315943|gb|AAO05077.1|AE016749_23 LtrC-like protein [Staphylococcus epidermidis ATCC 12228] Length = 778 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 15/92 (16%) Query: 3 YPRDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 + +++ I ++ + Y + + + + HD S N +K Sbjct: 457 ISEEQLENAKNK-SILDVASECGY-SFRKSGKYYIGNE-------HD----SLVLNANKN 503 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 Y +S G+ ++F+ G FI++V+ L Sbjct: 504 TYNWYSKQEYGNTINFIQNEKGLDFIDAVKYL 535 Score = 41.4 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 46/431 (10%), Positives = 111/431 (25%), Gaps = 82/431 (19%) Query: 9 KDLL--IHIPISNL-IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF 65 ++ I I L I + + + N D N K YY Sbjct: 360 DEIKKASQIDIVKLAIHEGYNPKKVGKNFYIDK--------DNHH--LTFNSEKNTYYD- 408 Query: 66 SCHV---KGDHLSFLSALLGCSFIESVQRL------AAIAGVPLPVVDPKIEKKEKIQTD 116 G+ + F SF+ +V+ L A + + I +++ Sbjct: 409 --KENKLGGNPIVFFRNQKNTSFVSTVKYLNELSEDATFNNIEVEQNKLPISEEQLENAK 466 Query: 117 LIRLIEVAT----------DFF----HHSLKNARDKRLHYYLDERGI------------- 149 +++VA+ ++ H SL +K + + ++ Sbjct: 467 NKSILDVASECGYSFRKSGKYYIGNEHDSLVLNANKNTYNWYSKQEYGNTINFIQNEKGL 526 Query: 150 ---------DSHAIEMFKLGYAPDSRYSLREHLRQKGFS--------EEKIIEAGLLIDG 192 ++ ++ S + ++K ++++ L+ Sbjct: 527 DFIDAVKYLNNEEFQVANFKEEKVVYDSSKYKYKEKEDMAVSRDYLINKRMLNEDLVNQL 586 Query: 193 DNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFF 252 + + F ++ G+++ R K + K+ +NF Sbjct: 587 IEQDYIKEDKMKNVCFQWKNQDGEIVGSDKRGTGKTPFRGIDKGSD------IKHAFNFS 640 Query: 253 GALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK 312 K I + + D + + G++ A + Sbjct: 641 TTEKP--KDIYIFEAPIDALSYRTLNQDKDGIYMSMNGLKQDAVRYQIAFYMKRYE---T 695 Query: 313 LSPRIVLCFDGDDPGLRAAYKAIDLVLCH--LIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + LC D D+ G + L+ +D + + + Sbjct: 696 DPESVHLCVDNDEAGNKFINNFQGLISNQSGKEINIVPEQPKEDGCKDWNDVLVNHVYKE 755 Query: 371 FEKLIVESLPL 381 ++ Sbjct: 756 KDRNFNAKKTN 766 >gi|313112352|ref|ZP_07798116.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa 39016] gi|310884618|gb|EFQ43212.1| putative ClpA/B-type chaperone [Pseudomonas aeruginosa 39016] Length = 902 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 17/141 (12%), Positives = 43/141 (30%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + A+ + E+ L Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGAPLGEGEARLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|305433109|ref|ZP_07402265.1| replicative DNA helicase DnaB [Campylobacter coli JV20] gi|304443810|gb|EFM36467.1| replicative DNA helicase DnaB [Campylobacter coli JV20] Length = 457 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 9/158 (5%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I ++ + Q ++ + + + + + Sbjct: 10 LERAILSSCIMSEDAYSSIAGDIEPKDFSLKAHQDVFKAIIACVNAGEPISISFLKKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E +++ L +R EI +I Sbjct: 68 KKIDEQILTEIIATPSIIDLPAYVNELREKSIKRQLLSFAHLLPTRINDNRAVSEISDEI 127 Query: 603 AQV-------TAKGEAEKTAILISILHEVHIQIHQIES 633 + + + I++S L E + +E+ Sbjct: 128 GKEIFNITNRVNTNDIKDIEIVLSELLEEFKKQKSLEN 165 >gi|302142065|emb|CBI19268.3| unnamed protein product [Vitis vinifera] Length = 1279 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 62/143 (43%), Gaps = 6/143 (4%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549 + + ++ ++ EL ++ + +L++ + + L ++L E + L Sbjct: 569 LEYTSLQEKFDMELKEL---DKKLEQKEAEMKRFASADTSVLKLHYEKKLLELEQEKKAL 625 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 K+++ D S+T++ +++ Y Q L + ++ ++K++ + Q+ + K Sbjct: 626 QKEIEELRHDLASISSTSDDGAQKLKEDYLQKLNVLEKQVSELKKKQDAQSQLLRQKQKS 685 Query: 610 EAEKTAILISILHEVHIQIHQIE 632 + E L + + Q Q++ Sbjct: 686 D-EAAKRLQDEIQRIKSQKVQLQ 707 >gi|260599491|ref|YP_003212062.1| putative mechanosensitive channel protein [Cronobacter turicensis z3032] gi|260218668|emb|CBA34008.1| Uncharacterized mscS family protein yjeP [Cronobacter turicensis z3032] Length = 1110 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 80/221 (36%), Gaps = 26/221 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + KN + Q + + Q++L + K S + + + ++ N P Sbjct: 24 DEKQIAQELEQAKAAKNQPDQAQVVEALQSAQNALEERKASLERAKQYQQVID---NFPK 80 Query: 497 ILQEQYQELADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + Q Q+L ++ + + L + + E ++ R + Sbjct: 81 LSQSLRQQLNNL--RDEPRRVPTGLTTDALNQEILQVSSQLLEKSREAQQEQDRAREIAD 138 Query: 549 LLKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI- 598 L QL +Q DA E + + + QQA + + R+ + ++ Sbjct: 139 SLSQLPQQQTDARRQLNDMERRAGAPTGSSALGAAQLLSQQAESAQLKARVDELELAQLS 198 Query: 599 ---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ A+ +++ L + L + Q++ QEA Sbjct: 199 ASNRQELARLRAELAQKQSEQLDAYLQALRNQLNSQRQQEA 239 >gi|322385174|ref|ZP_08058821.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus cristatus ATCC 51100] gi|321270798|gb|EFX53711.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus cristatus ATCC 51100] Length = 631 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E+L++ Q A + ++ ++ L +R L Q E+++ QI Sbjct: 532 KAEQEILREEAEQASPDNPAPAN---DYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIN 588 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ + + L E QI Q+ + +EAM+E Sbjct: 589 QLQEAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 623 >gi|237729095|ref|ZP_04559576.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226908824|gb|EEH94742.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 1104 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 75/219 (34%), Gaps = 20/219 (9%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 + + K + + + + ++L + K S + + + ++ N Sbjct: 19 AATAPDAKQLTQELEQAKAAKPAQPETVEALQSALNALEERKGSLERAQQYQQVID---N 75 Query: 494 HPAILQEQYQELADIRYDNNEL-------QKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 P + +L+++R D L + + + ++ R Sbjct: 76 FPKLSATLRAQLSNLR-DEPRNVPTGLTTDALNQEILQVSSQLLEKSRQAQQEQDRAREI 134 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE------- 599 + L QL +Q DA E I Q A+ L Q +E+E Sbjct: 135 ADSLSQLPQQQTDARRQLNELERRIGTANGNSAQNQAMQAESAKLKAQVDELELAQLSAN 194 Query: 600 --KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ +EA Sbjct: 195 NRQELARMRSELAEKQSQQLDAYLQALRNQLNSQRQREA 233 >gi|323650981|ref|YP_004243624.1| bacteriophage related protein [Bacillus subtilis subsp. natto] gi|323461621|dbj|BAJ77037.1| bacteriophage related protein [Bacillus subtilis subsp. natto] Length = 346 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 104/363 (28%), Gaps = 57/363 (15%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKGDHLSFLSALLGCSFI 86 + +N + C H+ + + +YCF+ C D + + G +F Sbjct: 27 KLKGSNIIC---KTIC--HNGHSHKLTYYSNSHSFYCFTECG-HMDLYGLIGKIKGLTFF 80 Query: 87 ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 ES + + G+ K + D+ FF +D L + Sbjct: 81 ESFKFVCQRFGL-----SYGNSKYGSDKVDM--------SFFEK--FEPKDMAAEIKLLD 125 Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206 + I + + + D+ Y N++ Sbjct: 126 KKILDSYYDYYHKSWIEDNIS---------------------PKTMKKFNIKYSVLDNQI 164 Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 I P +G ++ R L++ +F+K + L + GA L Sbjct: 165 IIPHYDLQGNLVGVRARNLNQELVNSGKKY--MPVFYKNRFLKHPTGA--CLYGLNFNLE 220 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS---PRIVLCFDG 323 + IIL E V+ + ++ + T +L R+++ D Sbjct: 221 QITDYGAIILCESEKSVMQIDTMFPDMSIAVALSGSTLTDTQLEIINDLGIERVIIALDK 280 Query: 324 DDPGLRAAYKAIDLVL----CHLIPGNRVNFVLLSRGE---DPDSFIRCYGKTAFEKLIV 376 + + + + + G+R ++ E D G F KL Sbjct: 281 EFTEVGSIEEKYYIEKINSVFINKLGSRFETSVMWDVEGLLDLKDSPSDKGPETFMKLFH 340 Query: 377 ESL 379 + Sbjct: 341 NRI 343 >gi|301059184|ref|ZP_07200123.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300446713|gb|EFK10539.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 345 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 123 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 172 >gi|269127176|ref|YP_003300546.1| ATPase AAA-2 domain-containing protein [Thermomonospora curvata DSM 43183] gi|268312134|gb|ACY98508.1| ATPase AAA-2 domain protein [Thermomonospora curvata DSM 43183] Length = 842 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 23/213 (10%), Positives = 62/213 (29%), Gaps = 16/213 (7%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y +RL++L + + + G + +++K L++ Sbjct: 280 YRGDFEERLRKLIDEIRDNSEHLVIFIDELHTAVTAGGGEGAMTAGNMLKPPLARG---- 335 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRL 541 E ++ + E + + + ++ + + VE + + R Sbjct: 336 ELHVIGA-----TTIDEYRKHIEK----DPAFERRFQPILVPEPSVEDSVEILRGLRDRY 386 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-LALYKRFRLLSRQKEEIEK 600 + + T A + R R R ++++ Sbjct: 387 EAHHQVRFSDEALVAAVELADRYLTDRFLPDKAIDLIDHAGARVRLRTRTPGRDVRDLDR 446 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 QI QV + + ++ Q++++E Sbjct: 447 QIEQVRREKDQAVAEENYDRAKKLREQLNELER 479 >gi|303232394|ref|ZP_07319086.1| ATP-dependent chaperone protein ClpB [Atopobium vaginae PB189-T1-4] gi|302481478|gb|EFL44546.1| ATP-dependent chaperone protein ClpB [Atopobium vaginae PB189-T1-4] Length = 974 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 4/135 (2%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF-GELLKQLDRQVRDAGLWSA 565 I + +L L S + + ++ E+ E ++ A Sbjct: 433 AIDLVDEAASQLRMELDSMPADIDAQTRQLTQMQIEEQALMKEDDAASKERLAALQQEIA 492 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624 T+ + R +Q + L R E+ + Q+ + T +G+ + + L + + E+ Sbjct: 493 QTKEKLDAARATWQNEKRAIDAVQELKRAVEDAKAQMEKATREGDLQTASELRYAKIPEL 552 Query: 625 HIQIHQIESQEAMIE 639 + +++A++E Sbjct: 553 QKKYQA--AEDALVE 565 >gi|302842080|ref|XP_002952584.1| hypothetical protein VOLCADRAFT_105563 [Volvox carteri f. nagariensis] gi|300262223|gb|EFJ46431.1| hypothetical protein VOLCADRAFT_105563 [Volvox carteri f. nagariensis] Length = 1048 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 87/271 (32%), Gaps = 17/271 (6%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 E ++ + L + W+R S + N + + + D Sbjct: 597 ESVLAQKLRQAEACWQRLVALYSKQKARLGRRCTEMQRMQENQARQAEQFRLQLRRQADE 656 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 LQ L R ++ AR R+Q L Q + K L ++ + E + Sbjct: 657 LQALQAAVALAEEAQTRSQEEVARQREQ---VSELQQVAAAKAALEQRAAAAEQEV---- 709 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + ++ +++ ++L + E + +E + + + L+ Sbjct: 710 ---DWLRRQLAATKQELQQSEEARRRLKQEMLDQAEEFQQRQAQERSEA--RQRHEQELQ 764 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 Q + + EA Q QQA A +R ++ ++ E + + + Sbjct: 765 QAEAARQRHEQELQQAEAARQRHEQELQQAEAARQRH---EQELQQAEAARQRHEQELQQ 821 Query: 612 EKT--AILISILHEVHIQIHQIESQEAMIEG 640 + + L E+ Q+ + A + G Sbjct: 822 AEALRRRHVQELQEIARQLEDARREVADLRG 852 >gi|171678847|ref|XP_001904372.1| hypothetical protein [Podospora anserina S mat+] gi|170937494|emb|CAP62151.1| unnamed protein product [Podospora anserina S mat+] Length = 1520 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 31/342 (9%), Positives = 86/342 (25%), Gaps = 40/342 (11%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D D + + + + + L + Sbjct: 514 DEDAHDREEELIYLREQMEEYVTEIERLRNENLN----REAEKRKMAELIKTLGERAGER 569 Query: 382 VDMLWKR-ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + R E + + ++ ++D+ R Q + ++ Sbjct: 570 MGENLGRQEEADVWKDLLEQETARREQSDEDNRRLRDEVFR--LKQEMAQQMGLPTSSSS 627 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + H A S + M ++ RE+ L + + +E Sbjct: 628 SFHHSRRHAPFSPAARPPTASFSSQDMDNATTVSVTLVDDLRRESEQLRH--ENAELRRE 685 Query: 501 QYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 + + + N E ++L+ + + P I L + + Sbjct: 686 VGAQTSMLTSRNREKERLYQEIEDLKMAQRRGGPAPSTIDSLLERSASRAGVHERSHSRI 745 Query: 559 DAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQK-----------------EE 597 G + + + ++ + + L + + L R+ EE Sbjct: 746 SGGATTVLDDLDRDELEEKLAELRDKNNELKLQNQDLQRELDACMEDFETAVEAKKQAEE 805 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + ++ L + + + + A +E Sbjct: 806 LVAALQED--------IDAAMNDLMALQAERDEALQEHANLE 839 >gi|121998001|ref|YP_001002788.1| Fis family transcriptional regulator [Halorhodospira halophila SL1] gi|121589406|gb|ABM61986.1| transcriptional regulator, Fis family [Halorhodospira halophila SL1] Length = 382 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 27/239 (11%), Positives = 76/239 (31%), Gaps = 25/239 (10%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +R ++ + + + RD+ + ++ + + + E A Sbjct: 29 EREREQLEALRDDLEAIQEDLAADRAARDEVEEALSQLERQVSEATRELERLRAERAEAR 88 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + + ++ +E + + L + + +V + + G L Sbjct: 89 GRVA--ELREDYAEEAERLG---RHRETLAEQIVAAYVSGGDDPLRLLLNQQDPAGAQRL 143 Query: 550 L------------------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 L +L+ ++ +L ++ Sbjct: 144 LVYHDYFNEARAGHIEAAMAELESLAALREELREELAELERLEEATREERESLAEQRAER 203 Query: 592 SRQKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 ++EE+E +IA+ A+ + A ++L ++ ++ + + A +E FG+ G L Sbjct: 204 DARREELEARIAERDAEAESLEAEVAEQEALLEDLRQRLADVPDEAAEVEAFGESRGNL 262 >gi|301765984|ref|XP_002918412.1| PREDICTED: disks large homolog 5-like [Ailuropoda melanoleuca] gi|281340310|gb|EFB15894.1| hypothetical protein PANDA_006865 [Ailuropoda melanoleuca] Length = 1917 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 35/331 (10%), Positives = 92/331 (27%), Gaps = 34/331 (10%) Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351 + + + L K V + D L + +L + Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENRRLLKQTEMLTQQRDTA 362 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + + + S RC +L + D+ W+ E Sbjct: 363 IQLQHQCALSLRRCEAIH--HELNKATAQNKDLQWEMELLQSELTELRTAQAKMAKESEK 420 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 +D Y + +R Q + + + K + ++K S+ + Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479 Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +K + + +EA LL + + L L E Sbjct: 480 IKDTVTMDAGRANKEAELLR-----------------------KQCKALCQELKEALQEA 516 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + +++ + D + + ++ + + K+ Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +SR+ +E+++Q+ + + + L++ Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRQLMAH 602 >gi|255717242|ref|XP_002554902.1| KLTH0F16500p [Lachancea thermotolerans] gi|238936285|emb|CAR24465.1| KLTH0F16500p [Lachancea thermotolerans] Length = 838 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 36/303 (11%), Positives = 86/303 (28%), Gaps = 21/303 (6%) Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 +L + + + D + R K L + + + + + S Sbjct: 172 ELKKAYRSLQLKFDQSEHKDQADLEQDARSNEKE-MRSLQKKLQEYQEQVTQSKKLVESL 230 Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYY---YSQAIRDRLQQLFQKYITEHSGYGRYWKK 452 + K L+ + + ++L + K Sbjct: 231 ENKLGNSASGSKEIKEQFEHKSSLLQERIDKLESELAAKDKELEINRNEIKNLQNDLQKA 290 Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 N + + K ++RE L+ Sbjct: 291 NHDSSSLADQKLQTRSKEIENLNNRLKSAVREREAAEHLLKE----------------SQ 334 Query: 513 NELQKLWSFLFSDFVE-QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 N L+ L + L + E + + + ER E L++ Q + + E N Sbjct: 335 NALRSLRAELSTLRQESDRKLDDLSVAKEKSERVLKERLEERTSQSERLQQRANSLEQNA 394 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ Q K +R+ +++ ++I + ++EK L + +I +I Sbjct: 395 AELSSRLQLRDQRIKALEDEARELQKMNQRIQDLNDGKDSEKLQAQNQKLDGLRSEIERI 454 Query: 632 ESQ 634 +++ Sbjct: 455 KNE 457 >gi|168064385|ref|XP_001784143.1| predicted protein [Physcomitrella patens subsp. patens] gi|162664343|gb|EDQ51067.1| predicted protein [Physcomitrella patens subsp. patens] Length = 1042 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 35/287 (12%), Positives = 92/287 (32%), Gaps = 25/287 (8%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 + + A + I++ ++ E +E + +N + + Sbjct: 518 VNDAKKSSESAATQHAIMQKRITTLEERHTTITSQMDEIKKEASEWRSKYEQLLNEHRME 577 Query: 419 KLRYYYSQAI-RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R + +R + ++ R + + ++++ + +S Sbjct: 578 QERSAAENKLVLNRCTISETRLAAMREQLEASKEEATEWRHKYETVEADTKAAIERANVS 637 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K +L++A L A+ + A + + E++ L S E+ + Sbjct: 638 KDRALKQAQL-----REDALRADFA---AAVALKDGEIKDLHSK-----FERGERQIAIL 684 Query: 538 HQRLCERG--FGELLKQLDRQVRDAGLWSATTEAN-------IVDVRQGYQQALALYKRF 588 RL E+ +++L + E D+ Q + +R Sbjct: 685 SSRLHEQEVKLTGQIEELMTLKTELQHSHTELETKTSTIVTLQKDLETACQDKVHAEQRM 744 Query: 589 RLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++ EE E+ +IA+ K +E + L + + + + Sbjct: 745 AEVMKRMEETERLWKIAEKREKYASEAVEKARNELSAIQREKSESQR 791 >gi|121997450|ref|YP_001002237.1| DnaB domain-containing protein [Halorhodospira halophila SL1] gi|121588855|gb|ABM61435.1| DnaB domain protein helicase, C-terminal domain protein [Halorhodospira halophila SL1] Length = 1098 Score = 46.8 bits (109), Expect = 0.010, Method: Composition-based stats. Identities = 19/160 (11%), Positives = 46/160 (28%), Gaps = 6/160 (3%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 S K+ E A+L L+ A + L + + E + ++ + Sbjct: 7 ASDSEALKVPPHDLEAEQAVLGGLMLDNAAWDQVADRLHEEDFYRREHRLVYRAMGELAE 66 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + L ++G +L+ + L E + Y + Sbjct: 67 GNHPMDVVTLSGWLRQQG------KLEEAGGLSYLGGIARETPSAANIRAYADIVRERSV 120 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R L R ++ + + + + + ++ Q Sbjct: 121 LRQLIRAGSDVAEAAFRPQGRNSEDLLDYAEQTIFQIAEQ 160 >gi|148679034|gb|EDL10981.1| hook homolog 2 (Drosophila), isoform CRA_b [Mus musculus] Length = 666 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 33/226 (14%), Positives = 68/226 (30%), Gaps = 14/226 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + R RL +L + R R R + +R ++ + Sbjct: 349 LNSCRRRLGELQELRRQVRQLEERNAGHAERTRQLEEELRRAGSLRAQLEAQRRQVQELQ 408 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + L E E L ++ + E +L R Sbjct: 409 GQWQEEAMKAEKWLFECRNLEEKCDLVTKE----KERLLTERDSLREANEELRCAQLQPR 464 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF----RLLSRQKEEIEK 600 G + L +GL + E ++R+ + KR ++EE+++ Sbjct: 465 GLAQ--ADLSLDPTPSGLENLAAEILPAELRETLVRLQLENKRLCQQEAADRERQEELQR 522 Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 + + G + + L E+ Q+ +++ A+ E GK Sbjct: 523 HLEEANRARHGLEAQQRLNQQQLSELRAQVEELQK--ALQEQGGKT 566 Score = 38.3 bits (87), Expect = 3.7, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA-KGE 610 +L+ D L E + +++Q Q +L + + L + +E+ + + + Sbjct: 289 RLESSREDDRLRCLELEREVAELQQRNQALTSLSQEAQALKDEMDELRQSSERARQLETT 348 Query: 611 AEKTAILISILHEVHIQIHQIESQEA 636 + L E+ Q+ Q+E + A Sbjct: 349 LNSCRRRLGELQELRRQVRQLEERNA 374 >gi|124008271|ref|ZP_01692967.1| replicative DNA helicase [Microscilla marina ATCC 23134] gi|123986220|gb|EAY26049.1| replicative DNA helicase [Microscilla marina ATCC 23134] Length = 496 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 18/171 (10%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 GK+ + E +L L+ ++ L + Q+++ +F + E Sbjct: 13 GKVPPQALELEEIVLGALMIDRNVISSVVSILKPKDFYKPAHQEIYQTIFDLYAESNPVD 72 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + Q L ++ +LD + + T N + + + +A + R Sbjct: 73 ILTVSQLLRKKV------KLDMVGGASYITKLTDIVNSGANVEYHARIIAEL----SIKR 122 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ----IESQEAMIEG 640 EI +I K ++++ + +L ++ + H+ + ++EA+I G Sbjct: 123 TLIEITAEIQ----KEAFQESSDALELLDQIQHKTHEATKHLFNKEALIIG 169 >gi|123455564|ref|XP_001315525.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121898204|gb|EAY03302.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Length = 2207 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 90/287 (31%), Gaps = 39/287 (13%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 ++ +L + + + E + ++ ++ + + I +I D Sbjct: 718 DSLQQQIDEKQRQLDELIKAIEERKNQSEQNKENNDSLQQQIDEKQRQLEAIKNIPDNS- 776 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++++LQ L + + + K+ D K + KK Sbjct: 777 -----EELKNQLQILEKAFNDKMEQNAANNKQLQDAIDSKKKELENTPEVQDNSEELKKQ 831 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 L + +++ + DN EL+ L EQK E Sbjct: 832 -----------------LDDINEQIEKRKNDNKELEDKLEELSKAINEQKLADEETAK-- 872 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + +K + + TE + +Q ++ + +++E+ Sbjct: 873 -KNEELEKQIKDKEAEKNSLVPVEDKTEELARKLADLEKQIAEQLEKQNETDGKNKDLEQ 931 Query: 601 QIAQVTAKGE-------------AEKTAILISILHEVHIQIHQIESQ 634 QI + K + + L+ L+++ +I++I+ Q Sbjct: 932 QIKEKQEKLDELKNNFIEDTKEKENEIEELLQELNDLDSKINEIQDQ 978 >gi|118363547|ref|XP_001014998.1| hypothetical protein TTHERM_00672210 [Tetrahymena thermophila] gi|89296765|gb|EAR94753.1| hypothetical protein TTHERM_00672210 [Tetrahymena thermophila SB210] Length = 3482 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 15/281 (5%) Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 L E L L + + + E E + + IK L Sbjct: 2869 QEMKKIIDLNKEQLELKENKILQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLE---I 2925 Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + RD L L +K + E Y++ + Q+ Q ++ + ++ Sbjct: 2926 EKFRDEL-VLTKKQLMEEKNRADYFQDQFKIYMGNQEHQKFQQEQIIMNTCLENKRSQQD 2984 Query: 486 ALLLTLINH-PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + +N + + + L L E + L E+ Sbjct: 2985 KI--HFLNEIEDLKNKNIAVTDKLDQMIAVNDNLTEVLKEKSQEIQELLIEKDKLLYERE 3042 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L+++ + DV + + ++ +Q E+++ QI Q Sbjct: 3043 QEQIQLERIQNNLHQLEEERENFLKETQDVYE--LKEKVSHQETNRYKQQIEDLKLQIQQ 3100 Query: 605 VTAKGEAE------KTAILISILHEVHIQIHQIESQEAMIE 639 + + + + ++ QI+++ Q + I+ Sbjct: 3101 KEFETNEQFQKNLNQLEQSQQEIIQLKDQINKLNYQISQIQ 3141 Score = 41.8 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 32/291 (10%), Positives = 90/291 (30%), Gaps = 35/291 (12%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQA 427 + L+ E+ L + + + + ++ + IKD++L Q Sbjct: 2815 KIKSLLEENKSLQE----KVAKQNAIEWYADQLKTTKETIEENQMIKDRQLIENKELIQE 2870 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ---KGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ + ++ + + + + + ++ + Q + +K + R+ Sbjct: 2871 MKKIIDLNKEQLELKENKILQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLEIEKFRD 2930 Query: 485 AALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSF--LFSDFVEQK--YFLPEEIH 538 +L L+ + I N E QK + + +E K Sbjct: 2931 ELVLTKKQLMEEKNRADYFQDQF-KIYMGNQEHQKFQQEQIIMNTCLENKRSQQDKIHFL 2989 Query: 539 QRLCERGFGELL--KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + + +LD+ + + + ++++ + L Q E Sbjct: 2990 NEIEDLKNKNIAVTDKLDQMIAVNDNLTEVLKEKSQEIQELLIEKDKLLYEREQEQIQLE 3049 Query: 597 EIEKQIAQVTAKGEA-----------------EKTAILISILHEVHIQIHQ 630 I+ + Q+ + E ++T + ++ +QI Q Sbjct: 3050 RIQNNLHQLEEERENFLKETQDVYELKEKVSHQETNRYKQQIEDLKLQIQQ 3100 Score = 41.4 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 38/325 (11%), Positives = 106/325 (32%), Gaps = 22/325 (6%) Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + +++ + + ED + L+ D + Sbjct: 3114 NQLEQSQQEIIQLKDQINKLNYQISQIQSEDRLKIQERVHFDST--LLELQKINEDNQIE 3171 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY---YSQAIRDRLQQLFQKYITEHS 444 + + + + D K R Y I L +++ + E Sbjct: 3172 IANLKDKLLKLENQRDKLQRQLSEEKEENDLKFRKSEQNYENQIAS-LDTKYKRLLDEFK 3230 Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLV--KGKLSKKPSLREAALLLTLINHPAILQEQY 502 ++ + +Q + + + K +L+K +E L + I + ++ Sbjct: 3231 YLSESYEHKKQELNQFKEELPQIANKIKNEKIELTKSIEEKEKQLDILSIQNKVSNEKIL 3290 Query: 503 QELADIRYDNNELQKLWSFLFSD-----FVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + N+ +++ + + +E KY + Q+L ++ L + Sbjct: 3291 DLESQVNIMINKNEQIQNTYLALQTQYQVLENKYTQQHKKIQQLEKQN-DNTKSHLTISL 3349 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR----QKEEIE----KQIAQVTAKG 609 + A + T+ I+++ ++ + R L + Q E++E K++ +V + Sbjct: 3350 QQAETQLSQTKMQIIELETKNKRLIDDISRANHLKQLMKDQMEDLEINFKKEMDEVREES 3409 Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634 + E++ +I ++ +Q Sbjct: 3410 IKDLNNKFEREKRELNFKIQKLGNQ 3434 Score = 37.2 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 47/339 (13%), Positives = 112/339 (33%), Gaps = 16/339 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 + +LL ++ + + D + A I + + ++NF +D Sbjct: 2604 DRSQLLKMIATKQLEIDDLKQKNNQEAI-LIQRIDKLVEENEQLNFQNQKLAQDYQQLNE 2662 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 + L + +TE ++ I +K + + Sbjct: 2663 RVNQNLKYMKEYNLLNEENQSLCEKTEEYQELLDKLEIKITILSNENNTLLKMMEEKQEQ 2722 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNA--RHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + ++ R ++ Q + KKN + +++ + L + ++ Sbjct: 2723 IELLKQREEEHSQSQNSMTKFQDLLEKKNQLIKQLEKQLREAQEQNKVLNNEIIFQQEQF 2782 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E L + A+ ++ I + E + S E K E++ ++ Sbjct: 2783 TEDKL------NEAVSNIVSEKNTLIEQISAENSNFKIKIKSLLEENKSLQ-EKVAKQNA 2835 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + LK + + + ++ Q ++ + L K L E +I Sbjct: 2836 IEWYADQLKTTKETIEENQMIKDRQLIENKELIQEMKKIIDLNKEQLELK------ENKI 2889 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 Q+ + EK AIL H+++ ++ +I++ IE F Sbjct: 2890 LQLKQTYDKEKEAILRETEHQINEKLEEIKAYTLEIEKF 2928 >gi|268572101|ref|XP_002641234.1| Hypothetical protein CBG09100 [Caenorhabditis briggsae] Length = 1136 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 34/324 (10%), Positives = 102/324 (31%), Gaps = 8/324 (2%) Query: 319 LCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES 378 + + + + L V + +D + ++ + Sbjct: 413 MTPEYTVRYNGQTMTENEFLNQLLHIVQHQKSVSERQQQDKFERMEQERIR--QEKEEKL 470 Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438 + E E D +A + + + + R + R+ + ++ Sbjct: 471 REMERRRQLAEAEKARQAEIDRQAAIYAEQERMAMERERELERIQQEERKREMERIRQEE 530 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E S + +++ ++R+ Q K R+ + + I Sbjct: 531 IAMEISRMRELERLQM---ERQQKNERVRQELEAARKQKILEEERQRKIKEQMREMEKIR 587 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +EQ + E + + ++ E + Q+ ER +L + + + + Sbjct: 588 KEQEEAREIEMRRLEEERAREMERVREEEMERQQQIERLRQQEEERKRKKLEMEKEERKK 647 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT---A 615 + ++ + Q L ++ ++L ++ EE + I + + +AE+ Sbjct: 648 ALIEEERKRKVLEKELEERRQAILEEERKRKILEKEMEERQTAIYEEQQRRKAEEERRKQ 707 Query: 616 ILISILHEVHIQIHQIESQEAMIE 639 + ++ Q+ ++ + + +E Sbjct: 708 KEMEERKQIQEQMRKVSEERSRLE 731 >gi|87310387|ref|ZP_01092517.1| DNA primase domain protein [Blastopirellula marina DSM 3645] gi|87286886|gb|EAQ78790.1| DNA primase domain protein [Blastopirellula marina DSM 3645] Length = 778 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 34 AVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF-SC 67 + ACCP HD+ TPS + D K CF C Sbjct: 16 RQGSGWMACCPAHDDHTPSLSISEGDDGKVLMKCFAGC 53 >gi|196015781|ref|XP_002117746.1| hypothetical protein TRIADDRAFT_61800 [Trichoplax adhaerens] gi|190579631|gb|EDV19722.1| hypothetical protein TRIADDRAFT_61800 [Trichoplax adhaerens] Length = 1160 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 36/288 (12%), Positives = 95/288 (32%), Gaps = 34/288 (11%) Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK 409 F+ +D ++ + K + L +E E + Sbjct: 817 FIAAIESDDDGAWKASSHRRHTNKREEKKLSKEYEKMLKEREKEKQKMKKDAELRRKRGD 876 Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + +D ++ +++ ++ Q E + ++ R D + + + Sbjct: 877 ISNSKPEDNEV-------LQNEIKDPIQDADAEIRKKTKEQREAKRLADAERRRLEVQRK 929 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQY---QELADIRYDNNELQKLWSFLFSDF 526 + +L + + E ++ + I++E+ Q L D+ E ++ + + Sbjct: 930 RAERKELEARQAEEEKRVIEEREENERIMKEKLAEMQRLKDLERRQREEKEKMDAVIKER 989 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 ++ E + Q+L E LL+ +Q Q Y Sbjct: 990 QLEQEREAEALKQKLAEEEIQRLLRARLQQ-----------------------QKEEEYL 1026 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R + +R+ +E E++I + K + E + + + ++++ Q Sbjct: 1027 RKEMENRKLQEEEQRIKEAEEKNQRELENKI-RQVQAAKKRENEMKDQ 1073 >gi|298243587|ref|ZP_06967394.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963] gi|297556641|gb|EFH90505.1| replicative DNA helicase [Ktedonobacter racemifer DSM 44963] Length = 448 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 9/148 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL + E +L ++I P + + L + + + ++ + + + + Sbjct: 3 KLLPQNVEAECGVLGSIIIDPEAIVQVADFLRAEDFYRDAHRVIFEVIVQLYEQHEPADF 62 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L ++G +L+ + S + Y ++ R +L R Sbjct: 63 ITICDELEQQG------KLEEVGGADYITSLVNLVPTSANVEHYGHIVS---RTAILRRL 113 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILH 622 + A +G+A+ L Sbjct: 114 IHAAGQIAAVAYDEGDADVALDKAEQLI 141 >gi|330469727|ref|YP_004407470.1| DnaB domain-containing protein helicase domain-containing protein [Verrucosispora maris AB-18-032] gi|328812698|gb|AEB46870.1| DnaB domain-containing protein helicase domain-containing protein [Verrucosispora maris AB-18-032] Length = 651 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 10/136 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + E A++ + +P+++ + LA + +LW L + + Sbjct: 2 TRPPAHDHAAEQAVIGAALLNPSVVADLAPTLAPADFHRPAHGRLWETLCAMHATGEPLD 61 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + L G L + + L + I Y + + + R R Sbjct: 62 PIALAAHLAATG------DLAKVGGASYLHTLIAAVPITANAGHYARIVTDHAR----RR 111 Query: 594 QKEEIEKQIAQVTAKG 609 Q ++ A+ +G Sbjct: 112 QVADLGTYFAEKADQG 127 >gi|297294945|ref|XP_001093376.2| PREDICTED: centrosomal protein of 120 kDa-like [Macaca mulatta] Length = 986 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L + EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTWKKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914 >gi|291336915|gb|ADD96444.1| hypothetical protein [uncultured organism MedDCM-OCT-S09-C426] Length = 278 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 17/142 (11%), Positives = 50/142 (35%), Gaps = 7/142 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++ L+ HP + E Q + + + + + ++ ++ + + + ++ Sbjct: 11 LEKDVIYGLLKHPEVFLENQQLVKEDAFTHPTHKIIFQVFKNNILNAEPVDVVTLSRKCK 70 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + G + + + L++A +E G + + L Q + + Sbjct: 71 KEGLEDKDGVPVFEYLENSLYAAISE-------DGLLELIRDLHWLSYLRFQWRKCYEAA 123 Query: 603 AQVTAKGEAEKTAILISILHEV 624 A + +IS + E+ Sbjct: 124 AVAMKSKNTSNKSSVISQIDEI 145 >gi|253569514|ref|ZP_04846924.1| PrmN1 [Bacteroides sp. 1_1_6] gi|251841533|gb|EES69614.1| PrmN1 [Bacteroides sp. 1_1_6] Length = 316 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 Y ++ N W P +E PSF N + ++ F G+ + Sbjct: 20 YSPVKQQGVNL-----WYKSPLREENEPSFKVNTEREQWFDFGLGKGGNII 65 >gi|168215888|ref|ZP_02641513.1| replicative DNA helicase [Clostridium perfringens NCTC 8239] gi|182382366|gb|EDT79845.1| replicative DNA helicase [Clostridium perfringens NCTC 8239] Length = 433 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 64/170 (37%), Gaps = 8/170 (4%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L T+ + + + EL D + N++ Q ++ + + + F + ++L Sbjct: 12 EEAILGTITANNKYMLKVIGELEDKDFYNSKNQMIYRAMCNLYKNSIPFDVVVLSEKLSN 71 Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEE 597 L + + + ++ IV + ++ + KR ++ + Sbjct: 72 EVKNGAITLTDIAEKTSHIDYGTLSSHVKIVKEKSRERKLINACKRVISSEGNVNSKINY 131 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF--GKMS 645 ++ ++ +V + + ++ + I + E + GF G +S Sbjct: 132 LQNELLEVNQVNRKDSIKNMSDVMFDTLEGIENTYNNEMGVRGFKTGILS 181 >gi|261335024|emb|CBH18018.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 865 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 28/214 (13%), Positives = 61/214 (28%), Gaps = 16/214 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 +R + L ++ R + +K + Q + ++ E Sbjct: 530 ANRAKNLQERERLIELRNERLQEMMMEKVRRKREEDLIAQQNAAARIKLQQERNAERE-- 587 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFG 547 +E + L Q L ++ EE R+ Sbjct: 588 ------KEYQRELQERLERAEERTARQQAARDHLLEQRRIRRKKNAEERQARIERMAEMQ 641 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E ++ R+ + + +Q Q L + + +E+ +Q Q Sbjct: 642 EQQSEILRRKYEERDAKVQLVQEERERKQREAQELLAARAAKS-----QELREQARQRAL 696 Query: 608 KGEAEKTAILISILHEVHIQIHQI--ESQEAMIE 639 E E + EV ++ Q+ + +E + E Sbjct: 697 LREEEVRQAALGQQQEVENRLRQLTKQREEEVAE 730 >gi|152989614|ref|YP_001345558.1| type VI secretion ATPase [Pseudomonas aeruginosa PA7] gi|150964772|gb|ABR86797.1| type VI secretion ATPase, ClpV1 family [Pseudomonas aeruginosa PA7] Length = 902 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 68/225 (30%), Gaps = 31/225 (13%) Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA--ILQE 500 + W + +H ++ R Q V K L + T+ H IL E Sbjct: 340 RTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEQHHQVQILDE 399 Query: 501 QYQELADIRYDNNELQKLWSF---LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 + + + ++L L + + + + ++ L+ ++ Sbjct: 400 ALEAAVRLSHRYIPARQLPDKSVSLLDTACARTAISLHAVPAEVDDS--RRRIEALETEL 457 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---------------- 601 SA A R +R L R+ E ++ Sbjct: 458 AIIRRESAIGVATGERQRNAETLLAEERERLAGLERRWAEEKRLVDELLETRARLRAAAE 517 Query: 602 --------IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + + A+ + E+ L + L E+ Q+ ++ +E +I Sbjct: 518 AVDAGGTPLGEGEARLDEEQRQALHARLAELQAQLSALQGEEPLI 562 >gi|20089515|ref|NP_615590.1| antigen [Methanosarcina acetivorans C2A] gi|19914425|gb|AAM04070.1| antigen [Methanosarcina acetivorans C2A] Length = 656 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 31/77 (40%) Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++L + + +A + Q ++ + ++ ++ ++E ++ + + E Sbjct: 322 EKLSQLEKQQMEKEKQAKAERERLAQLERERIEAERQAEAERKRLAQLESELQEARRQEE 381 Query: 611 AEKTAILISILHEVHIQ 627 E+ L L EV Q Sbjct: 382 TERVTRLEKELKEVQAQ 398 Score = 44.5 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + E + + R E L+ L + + + ++ LA +R Sbjct: 291 ETERTDVVETDEEIRVRQERERLEGLRGTQEEKLSQLEKQQMEKEKQAKAERERLAQLER 350 Query: 588 FRLLSRQKEEIEK-QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 R+ + ++ E E+ ++AQ+ ++ + + + + ++ ++++QE + Sbjct: 351 ERIEAERQAEAERKRLAQLESELQEARRQEETERVTRLEKELKEVQAQEEI 401 >gi|332221574|ref|XP_003259938.1| PREDICTED: centrosomal protein of 120 kDa isoform 1 [Nomascus leucogenys] Length = 987 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q+S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQASIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLATEEKDTVKTEQQELLDIRNELNRLRQQE 914 >gi|311252430|ref|XP_003125094.1| PREDICTED: LOW QUALITY PROTEIN: c-type lectin domain family 4 member F-like [Sus scrofa] Length = 604 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 77/226 (34%), Gaps = 17/226 (7%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 K + +K+ + + + D + L +Y S + R + + L Sbjct: 243 QAKMANSSLKNVDAQIHVLRGSLDGINDLRTQYQVLRSXLEGATAEMQRLKGSLQNANAL 302 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + K S + E +L H + L + Q + + Sbjct: 303 SAQTQTFLKGSLDNTSAEIQVLRG---HLEKASSEIHLLKR-DLETVTAQT---QIANSH 355 Query: 527 VEQKYFLPEEIHQRLCER-GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 +EQ L ++ L+ +R+A I +++G + A AL Sbjct: 356 LEQTDAQMHVFKTDLESTTALKAKIQMLNDLLRNASQ-------EIQTLKRGLKDATALN 408 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + R+L R +E +I ++ KG+ E T L + + E ++ + Sbjct: 409 SKARVLERNLQEARAEIQKL--KGDLENTKTLATRIQEEQRRLEAL 452 >gi|312879781|ref|ZP_07739581.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260] gi|310783072|gb|EFQ23470.1| primary replicative DNA helicase [Aminomonas paucivorans DSM 12260] Length = 450 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 10/143 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ E A+L + L L+ + + + + + + + Sbjct: 8 RVPPHNLEAERAVLGACLLDRDALLAVTDLLSPGDFYDQRHRMAYELVQEMARKDRAVDA 67 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 +G LL++L Q AGL A T + R + + R+ Sbjct: 68 LTFWDEGERKG---LLERLGGQPFIAGLVDAVTTTANAEHHARLV-------RDKAVHRR 117 Query: 595 KEEIEKQIAQVTAKGEAEKTAIL 617 ++ +IA++ E ++ L Sbjct: 118 LIQVGAEIARLGYAEERDREETL 140 >gi|261881018|ref|ZP_06007445.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332247|gb|EFA43033.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 301 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 4/68 (5%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSC 67 I + I + + D + + P EK SF N +Y F Sbjct: 3 IDQIK-KIKLQEFLA---TIDCKPVKQYGVNLMYLSPLRTEKHASFKVNTELNLWYDFGI 58 Query: 68 HVKGDHLS 75 G+ + Sbjct: 59 SRGGNIID 66 >gi|291570797|dbj|BAI93069.1| replicative DNA helicase [Arthrospira platensis NIES-39] Length = 587 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 10/162 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 ++ L S L + + E A+L ++ P + L + + Q ++ Sbjct: 2 AESLPISPLSNDRNPPQNIEAEEAILGGILLDPEAISRVADILKPEHFAISAHQSIYRAT 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + ++ K + L + Q+ AG E + Sbjct: 62 LTLHLQGKPTDLMTVTTWLADH----------NQLDAAGGQMKLAELVDRTISAVNIDQY 111 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +L + L RQ + +++AQ+ + E +L + Sbjct: 112 SLLVIDKFLRRQLIQAGQEVAQLGYQTNMELEKVLDQAEQRI 153 >gi|145516020|ref|XP_001443904.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124411304|emb|CAK76507.1| unnamed protein product [Paramecium tetraurelia] Length = 1636 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 96/261 (36%), Gaps = 20/261 (7%) Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438 D ++ E + E ++N + ++DQ + Y+ I+ + Sbjct: 963 KEKSDKKFQAAQEEFYHKLRETEQNYEEEIENLKDDLRDQVQQ--YTNTIQQ-----YDH 1015 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 I ++K+ + ++ S + ++ ++ +++ + R +LI +L Sbjct: 1016 EIALKQQTIEIFEKHIKETKEQLISLQNNNNATLEQQMNSFTTER-----KSLIQKIDVL 1070 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 Q L E L D +E + E+ ++ + E +QL+R Sbjct: 1071 SSQLNNL------QKEHMALQQK--KDLLENEKSRKEQQFEQSRKEWQEEKKEQLERLEE 1122 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + + ++ + ++ L ++ E++++Q+ ++ + + Sbjct: 1123 TKLRLQKMNDEFLEKKIEYGRETALIQQQNEFLQKKIEDLQRQLDTQQSRFDEKLKQQKN 1182 Query: 619 SILHEVHIQIHQIESQEAMIE 639 L E+ ++ + + ++ IE Sbjct: 1183 EYLVELEQKLERAQEEKTAIE 1203 >gi|331674511|ref|ZP_08375271.1| replicative DNA helicase [Escherichia coli TA280] gi|331068605|gb|EGI40000.1| replicative DNA helicase [Escherichia coli TA280] Length = 491 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 41/156 (26%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E L+ + + ++ + V + + + L Sbjct: 48 AEQAVLGGLMLENERWDEVVLMLSPDDFYVAPHRAIFRAMSELAVNGQPLDLITLSEHLE 107 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +G +LD A L + Y + R L + + Sbjct: 108 HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 161 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 A + L + E EA + Sbjct: 162 A-APNATSRDVLDAAERRLFALAQNRTLRERTEASL 196 >gi|301059858|ref|ZP_07200750.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300446070|gb|EFK09943.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 789 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 560 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 609 >gi|224026167|ref|ZP_03644533.1| hypothetical protein BACCOPRO_02923 [Bacteroides coprophilus DSM 18228] gi|224019403|gb|EEF77401.1| hypothetical protein BACCOPRO_02923 [Bacteroides coprophilus DSM 18228] Length = 862 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 41/272 (15%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + L +DM + + + +I Sbjct: 220 RILRGDVPENLKNKQLYSLDMGALVAGAKYKGEFEERLKSVINEVTKSDGNI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++N P + L + R+ + Sbjct: 328 ERRFQTVMVNEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + + + I + + A L L + +EIE+++ Sbjct: 366 EAIIAAVELSNRYITER----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q+ + EA K + L +++ +I +++ QE Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQE 450 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 75/205 (36%), Gaps = 10/205 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + S +++ + + + +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTASSISILRGLKERYENHHQVRIKDEAIIAAVELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + E++ I + KL + +EI +RL + + ++ Sbjct: 377 RYITERFLPDKAIDLMDEAAAKLRME-----RDSLPEELDEIERRLKQLEIEREAIKREK 431 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 I ++++ A ++ + L + +E +K+I Q+ + + + Sbjct: 432 DEAKLAQL----NKEIAELKEQETSYKAKWQSEKQLVNKIQENKKEIEQLKFEADKAERE 487 Query: 616 ILISILHEVH-IQIHQIESQEAMIE 639 + E+ ++ +E++ I+ Sbjct: 488 GDYGRVAEIRYGKLQALENEIKSIQ 512 >gi|237843203|ref|XP_002370899.1| trichohyalin, putative [Toxoplasma gondii ME49] gi|211968563|gb|EEB03759.1| trichohyalin, putative [Toxoplasma gondii ME49] gi|221481903|gb|EEE20273.1| trichohyalin, putative [Toxoplasma gondii GT1] gi|221502400|gb|EEE28133.1| trichohyalin, putative [Toxoplasma gondii VEG] Length = 1427 Score = 46.8 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 ELQ L L E + ++ ++ ++ E L +LD +++ A Sbjct: 170 EELQVLRDELEHKIRENEQLHVQQFEEKQRQQMQQERLARLDEELQQAHHAYQQLRKEQA 229 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQ 630 + + Q ALY+ R RQ EE + ++ + + + T + L + + Sbjct: 230 ETEKRVQTCEALYQEEREEKRQIEE---RFRELKRETDLQLTRLSEQKDVLQHQQAHLRR 286 >gi|332221576|ref|XP_003259939.1| PREDICTED: centrosomal protein of 120 kDa isoform 2 [Nomascus leucogenys] Length = 961 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 90/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q+S+ + K Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASAESELQREKKELQSERQRNLQELQASIRRAKEDC 736 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 851 LEQMRLRYLATEEKDTVKTEQQELLDIRNELNRLRQQE 888 >gi|254380625|ref|ZP_04995991.1| chaperone protein clpB [Streptomyces sp. Mg1] gi|194339536|gb|EDX20502.1| chaperone protein clpB [Streptomyces sp. Mg1] Length = 879 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 74/214 (34%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R +++ + +++ + ++ +++ AL+ ++H Sbjct: 324 YRKHIEKDAALERRFQQVLVEEPSVEDTISILRGLRERLEVFHGVKIQDTALVSAATLSH 383 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + + + Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEDAALSKETD--- 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 L E + + A ++ R R+ +E+ +++ QV + E + Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496 Query: 615 AILISI--------LHEVHIQIHQIESQEAMIEG 640 A ++ L ++ ++ E Q A +G Sbjct: 497 AYDLNRAAELRYGSLQDLERRLAAEEEQLAAKQG 530 >gi|71908307|ref|YP_285894.1| hypothetical protein Daro_2694 [Dechloromonas aromatica RCB] gi|71847928|gb|AAZ47424.1| conserved hypothetical protein [Dechloromonas aromatica RCB] Length = 309 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 13/83 (15%) Query: 41 ACCPFH--DEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA 96 CP +++ F +D +G YYC C GD + + A+ G F + + + A Sbjct: 32 CSCPICGGNDR---FRFDDKEGRGTYYCR-CGA-GDGIKLVMAVKGWDFKTAAREIEQAA 86 Query: 97 GV----PLPVVDPKIEKKEKIQT 115 GV P+ + EK EK++ Sbjct: 87 GVVQAGPIHSPQGEAEKVEKLRR 109 >gi|328544466|ref|YP_004304575.1| toxin/protease secretion system [polymorphum gilvum SL003B-26A1] gi|326414208|gb|ADZ71271.1| Putative toxin/protease secretion system [Polymorphum gilvum SL003B-26A1] Length = 444 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 19/136 (13%) Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 L + +++ +++ + F + ++ L+ Q G + + D+ + Sbjct: 155 ELLEARRASRTGRKKQLEEQIRQ--FDKQVEGLEAQRLAKGREIELIDDELADLIGLLDK 212 Query: 581 ALALYKRFRLLSRQKEEIE-------KQIAQVTAKG----------EAEKTAILISILHE 623 L R L R K +E QIAQ + E A ++ L + Sbjct: 213 KLVARNRVTALQRDKARLEGDYGSLIAQIAQSREAISERRLLILQIDDEARAEVLEQLQD 272 Query: 624 VHIQIHQIESQEAMIE 639 V ++ ++E Q E Sbjct: 273 VRGRLARLEEQRIAAE 288 >gi|118364916|ref|XP_001015679.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila] gi|89297446|gb|EAR95434.1| hypothetical protein TTHERM_00077380 [Tetrahymena thermophila SB210] Length = 1286 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 104/295 (35%), Gaps = 32/295 (10%) Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 + +L + D L + ++ + + + + +++ +++++++ +S+ Sbjct: 725 QDEIARLNKLLKSVKDELGFYQAQHIEYVSRFNQEKTNKLVRHYDELLENEQIKNMFSKD 784 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 ++D L + + + + + + +G +SK L + + Sbjct: 785 MQDSLAATVNEQEKQIEELQKQIQNIKEEYETREKQLIEFNEQQNEGLVSKNVELEQDLI 844 Query: 488 ------------LLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFLFSDFVEQKY 531 + L ++++Y E+ ++ +NNEL++ L + Sbjct: 845 RVQNQAREQADQIAYLEQEVQQIKQRYIEIEMKKDNLILENNELKERIDQLEETRNQNLE 904 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----- 586 + I ELL+Q ++++ +A ++ + + + Sbjct: 905 IKEDAIKHI---TELQELLEQKNQEIERLNQQRDLIQAEYDELLKSLTEMENNLQVVQHN 961 Query: 587 ------RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + L R+ +E++ + Q E+ + + E+ +++ + +E Sbjct: 962 FSLSKNQHEQLKRETQELKSILVQKGPG--DEEHDEIQQSIQELKKELNIQDEEE 1014 >gi|73970960|ref|XP_531888.2| PREDICTED: similar to CG6014-PA [Canis familiaris] Length = 1236 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 30/280 (10%), Positives = 90/280 (32%), Gaps = 13/280 (4%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + +++ +E + + ++ + K Sbjct: 895 PRETLEYKAALELEMWKEMQEDIFENQLRQKELAHMQALAEEWKKRDRERESLVK--KKV 952 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ ++ + ++ + + +Q S+ + K Sbjct: 953 AEYTVLEGKLQKTLIDLEKREQQLVLAESEVQRERKELKSERERNLQELQDSIRRAKEDC 1012 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L LQ+Q + + + + L +Q + Sbjct: 1013 VHQVELERLKMRQLEEDKHRLQQQLNDAEN------KYKILEKEFHQFKDQQSNKPEIRL 1066 Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL ++L+ + + + ++ + Q+ + L +Q+ Sbjct: 1067 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 1124 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 EE+E+ + A E + L ++ +++++ QE Sbjct: 1125 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 1164 >gi|302531949|ref|ZP_07284291.1| predicted protein [Streptomyces sp. AA4] gi|302440844|gb|EFL12660.1| predicted protein [Streptomyces sp. AA4] Length = 417 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 26/92 (28%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + H P + V L E ALL L++ PA Sbjct: 2 TVPAPRVAGRAGPPADVGHAPPPAPVTTGARRDAVASPPGGATRLAERALLGALLHRPAR 61 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 L + L + + EL ++S + Sbjct: 62 LADVQGWLRPHDFADPELGAVYSAMQDLHGRG 93 >gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] Length = 749 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTP--SFHCNDSKGFYYCFSCHV-KGDHLSFLSALLGCS 84 R+ V GD P SF CN G + F+ GD +S ++A Sbjct: 33 KRQGRELVAGDIHG--------NPGKSFSCNTETGVWSDFATGESGGDVISLVAAQEELG 84 Query: 85 FIESVQRLAAIAGVPLPVVDPK 106 ++ + +A G+ PK Sbjct: 85 QAKAARMIAEELGLAPVTPKPK 106 >gi|297530994|ref|YP_003672269.1| ATP-dependent chaperone ClpB [Geobacillus sp. C56-T3] gi|297254246|gb|ADI27692.1| ATP-dependent chaperone ClpB [Geobacillus sp. C56-T3] Length = 864 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 72/208 (34%), Gaps = 16/208 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ + + AL+ + Sbjct: 319 YRQYIEKDPALERRFQQVLVQEPSVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547 + +++ I + + + + S E + + + E Sbjct: 379 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 438 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L L +++ D + +A ++ + L + R+ EE E + Sbjct: 439 ERLAALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELEEAENE------ 492 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQ 634 + K A L + ++ Q+ Q+E + Sbjct: 493 -YDLNKAAELRHGRIPQLEKQLKQLEQE 519 >gi|162454183|ref|YP_001616550.1| putative exported glycine/glutamine-rich protein [Sorangium cellulosum 'So ce 56'] gi|161164765|emb|CAN96070.1| putative exported glycine/glutamine-rich protein [Sorangium cellulosum 'So ce 56'] Length = 646 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 80/221 (36%), Gaps = 11/221 (4%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 +LF+ + + + + + L + + ++ E LL Sbjct: 192 ELFKDAAKALDRQDQSPEMKSAVERFNQLIEDIANKRLDRTEAFRRMEALERELLKGAEA 251 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF---GELL 550 L+E +E ++ + + L +E+ +E+ ++L ++ + Sbjct: 252 DLKALEEALKETGLDLKKSDLAKGVGESLEKKDLEKAKKDLKELAEKLRDKKQKFDKAEI 311 Query: 551 KQLDRQVRDAGLWSATTEANIVDVR-QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608 ++L + + +A A I + R + +Q L ++ +Q+ E E+ + + + Sbjct: 312 ERLRKALAEAASRRKEALAAINEKRAEAREQLLKQKQKASANDQQRSEQERLLKKKEREL 371 Query: 609 ----GEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 EAE+ L + ++ ++ E ++ G + Sbjct: 372 ERLDREAEQKERTGRQLDRLDRELA--KAAEDLMRDLGMSA 410 >gi|71656402|ref|XP_816749.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70881897|gb|EAN94898.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1238 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + + E + ++ + + + L L E + Sbjct: 332 QEVSEQAEDLQRQLEELRVENEELRAEHENKTRGLQEVSEQAEDLQRQLEELRAENEELR 391 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E+ H+ + E + L R++ + + A +G Q+ L ++ L R Sbjct: 392 AEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLQE---LSEQAEDLQR 448 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 449 QLEELRAENEELRAEDENKTRGLREVSEQAEDLQRQLEELRAE 491 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 63/163 (38%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + ++ + + + L L E + Sbjct: 367 QEVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELR 426 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E+ H+ + E + L RQ+ + + A + +G ++ ++ L R Sbjct: 427 AEDEHKTRGLQELSEQAEDLQRQLEELRAENEELRAEDENKTRGLREV---SEQAEDLQR 483 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 484 QLEELRAENEELRAEHEHKTRGLQEVSEQAEDLQRQLEELRAE 526 Score = 44.1 bits (102), Expect = 0.068, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 77/219 (35%), Gaps = 12/219 (5%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 ++++LR Y R + Q + + + + ++ L + Sbjct: 141 ENEELRGEYEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGL-------QE 193 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 +S++ + L + + E + ++ + + + L L E + E Sbjct: 194 VSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGE 253 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + ++ + E + L RQ+ + + + A G Q+ L ++ L RQ Sbjct: 254 DENKTRGLQEVSEQAEDLQRQLEELRVENEELRAEDEGKACGLQE---LSEQAEDLQRQL 310 Query: 596 EEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIE 632 EE+ + ++ + E + + ++ Q+ ++ Sbjct: 311 EELRAENEELRGEHEHKTRGLQEVSEQAEDLQRQLEELR 349 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + +R + + + L L E + Sbjct: 507 QEVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQAEDLQRRLEELRAENEELR 566 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E RG E+ +Q + R A E + + + ++ L R Sbjct: 567 AE---DEHKTRGLREVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQAEDLQR 623 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ Q+ ++ ++ Sbjct: 624 QLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAE 666 Score = 43.3 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 32/254 (12%), Positives = 83/254 (32%), Gaps = 10/254 (3%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ---KYITEHS 444 E + E L+ +D + R +A + L+ + + + E S Sbjct: 381 EELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLQELS 440 Query: 445 GYGRYWKKNARHRDQKGPSQRLMQSSLVKG--KLSKKPSLREAALLLTLINHPAILQEQY 502 ++ + R + +G ++S++ + L + + E Sbjct: 441 EQAEDLQRQLEELRAENEELRAEDENKTRGLREVSEQAEDLQRQLEELRAENEELRAEHE 500 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 + ++ + + + L L E + E RG E+ +Q + R Sbjct: 501 HKTRGLQEVSEQAEDLQRQLEELRAENEELRGEH---EHKTRGLREVSEQAEDLQRRLEE 557 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISI 620 A E + + + ++ L RQ EE+ + ++ + E + + Sbjct: 558 LRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEELRGEHEHKTRGLREVSEQ 617 Query: 621 LHEVHIQIHQIESQ 634 ++ Q+ ++ ++ Sbjct: 618 AEDLQRQLEELRAE 631 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 33/256 (12%), Positives = 87/256 (33%), Gaps = 19/256 (7%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++ +++ + Q + L+ ++ EH R ++ + + Sbjct: 43 EHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEE 102 Query: 467 MQSSLVKGKLSKKPSLR------------EAALLLTLINHPAILQEQYQELADIRYDNNE 514 +++ + + + R + L + + E + ++ + + Sbjct: 103 LRAENEELRAEDEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEYEDKTRGLQEVSEQ 162 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 + L L E + E + + E + L RQ+ + + A D Sbjct: 163 AEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRAEHEDK 222 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQI- 631 +G Q+ ++ L RQ EE+ + ++ + E + + ++ Q+ ++ Sbjct: 223 TRGLQEV---SEQAEDLQRQLEELRAENEELRGEDENKTRGLQEVSEQAEDLQRQLEELR 279 Query: 632 -ESQEAMIEGFGKMSG 646 E++E E GK G Sbjct: 280 VENEELRAEDEGKACG 295 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 86/257 (33%), Gaps = 17/257 (6%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + + E EL ++ +++ + Q + L+ ++ EH R Sbjct: 481 LQRQLEELRAENEELRAEHEHKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEHKTRG 540 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR------------EAALLLTLINHPAI 497 ++ + + +++ + + + R + L + + Sbjct: 541 LREVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEEL 600 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 E + +R + + + L L E + E+ H+ R E + L RQ+ Sbjct: 601 RGEHEHKTRGLREVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQL 660 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TA 615 + + A +G Q+ ++ L R+ EE+ + ++ A+ E + Sbjct: 661 EELRAENEELRAEDEHKTRGLQEV---SEQAEDLQRRLEELRAENEELRAEDEHKTRGLQ 717 Query: 616 ILISILHEVHIQIHQIE 632 + ++ Q+ ++ Sbjct: 718 EVSEQAEDLQRQLEELR 734 Score = 41.8 bits (96), Expect = 0.34, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 5/163 (3%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++S++ + L + + E + +R + + + L L E + Sbjct: 542 REVSEQAEDLQRRLEELRAENEELRAEDEHKTRGLREVSEQAEDLQRQLEELRAENEELR 601 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 E H+ R E + L RQ+ + + A +G ++ ++ L R Sbjct: 602 GEHEHKTRGLREVSEQAEDLQRQLEELRAENEELRAEDEHKTRGLREV---SEQAEDLQR 658 Query: 594 QKEEIEKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 Q EE+ + ++ A+ E + + ++ ++ ++ ++ Sbjct: 659 QLEELRAENEELRAEDEHKTRGLQEVSEQAEDLQRRLEELRAE 701 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 26/242 (10%), Positives = 82/242 (33%), Gaps = 17/242 (7%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 ++ +++ + Q + L+ ++ EH R ++ + + Sbjct: 148 EYEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEHEDKTRGLQEVSEQAEDLQRQLEE 207 Query: 467 MQSSLVK------------GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 +++ + ++S++ + L + + E + ++ + + Sbjct: 208 LRAENEELRAEHEDKTRGLQEVSEQAEDLQRQLEELRAENEELRGEDENKTRGLQEVSEQ 267 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 + L L VE + E+ + + E + L RQ+ + + Sbjct: 268 AEDLQRQLEELRVENEELRAEDEGKACGLQELSEQAEDLQRQLEELRAENEELRGEHEHK 327 Query: 575 RQGYQQALALYKRFRLLSRQKEEI--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +G Q+ ++ L RQ EE+ E + + + + + ++ Q+ ++ Sbjct: 328 TRGLQEV---SEQAEDLQRQLEELRVENEELRAEHENKTRGLQEVSEQAEDLQRQLEELR 384 Query: 633 SQ 634 ++ Sbjct: 385 AE 386 >gi|326336693|ref|ZP_08202861.1| chaperone protein ClpB [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691163|gb|EGD33134.1| chaperone protein ClpB [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 860 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 24/280 (8%), Positives = 77/280 (27%), Gaps = 38/280 (13%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L +++ +DM + + + + +I Sbjct: 220 RIVNGDVPENLKDKTIYSLDMGALIAGAKYKGEFEERLKSVVKEVTSSDGNI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGGGEGAMDAANILKPALARGELRAIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++ P + + + R+ + Sbjct: 328 ERRFQKVMVEEPD---------------TESAISILRGIKEKYEAHHKV-------RIKD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + + L + + + + + +L R+ ++E +I Sbjct: 366 DAIIAAVELSERYIPNRYLPDKAIDLMDEAAAKLRMEINSKPEELDVLDRKIMQLEIEIE 425 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI----ESQEAMIE 639 + + + EK +L + L + + + + + ++ +++ Sbjct: 426 AIKRENDEEKLRLLNAELANLKEERNALFSKWQGEKTLVD 465 >gi|330823064|ref|YP_004386367.1| hypothetical protein Alide2_0429 [Alicycliphilus denitrificans K601] gi|329308436|gb|AEB82851.1| hypothetical protein Alide2_0429 [Alicycliphilus denitrificans K601] Length = 154 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCF-SCHV-KGDHLSFLSALLGCSF 85 +R+ C FH T S N G + C C GD L++ A G F Sbjct: 24 ERKGKWRTTA-----CNFHG-STDSLRINTDSGSFVCMTGCGARGGDVLAYHQAAHGLGF 77 Query: 86 IESVQRL 92 I++ + L Sbjct: 78 IDAAKEL 84 >gi|322489715|emb|CBZ24975.1| putative kinesin K39 [Leishmania mexicana MHOM/GT/2001/U1103] Length = 2663 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 105/372 (28%), Gaps = 34/372 (9%) Query: 280 YMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVL 339 + + + S+ + ++ + PR + D+ L + + Sbjct: 793 FDERWAFPDLKDATTTSTHTKVFPHAEWNIVLQNKPRELDRIFRDEAALACRVRPRHITH 852 Query: 340 CHLIPG-----NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 G V + +D ++ ++ Y A + L D L EN Sbjct: 853 LCFDLGSLRATFTVEHSINISDKDIENRLQHYTFRAMQDLYDHRYSPPDGLDALAFENAR 912 Query: 395 FNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR------LQQLFQKYITEHSGYGR 448 + + +I N R + ++ ++ + Sbjct: 913 LRQDRDNDQCDILAAN--------AERERLQSELEEKGSEADAAKEDIDALRGQLEEANA 964 Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 ++ ++KG + + + + E L E ++ ++ Sbjct: 965 ERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ---------SELEEKGSEA 1015 Query: 509 RYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWS 564 + L L E Q + + L QL+ + Sbjct: 1016 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1075 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILH 622 + E + + AL + + ++E ++ ++ + ++ + E L L Sbjct: 1076 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLE 1135 Query: 623 EVHIQIHQIESQ 634 E + + +++S+ Sbjct: 1136 EANAERERLQSE 1147 Score = 43.7 bits (101), Expect = 0.092, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 71/219 (32%), Gaps = 13/219 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1947 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2006 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE------EI 537 + + E ++ ++ + L L E++ E E Sbjct: 2007 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2066 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L QL+ + + E + + AL + + ++E Sbjct: 2067 DAAKEDNDDDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERER 2126 Query: 598 IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ ++ + ++ + E L L E + + +++S+ Sbjct: 2127 LQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSE 2165 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1597 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1656 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1657 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1716 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1717 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQ 1776 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1777 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1813 Score = 42.6 bits (98), Expect = 0.19, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1562 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1621 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1622 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1681 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1682 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1741 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1742 SELEEKGSEADAAKEDIDALRGQLEEANAERERLQSE 1778 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1632 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1691 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1692 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1751 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1752 DAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1811 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1812 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1848 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 64/212 (30%), Gaps = 15/212 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 D ++ + ++ ++KG + + + + + E L Sbjct: 2103 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERL 2162 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544 E ++ ++ + L L E Q + + Sbjct: 2163 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 2213 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L QL+ + + E + + AL + + ++E ++ ++ + Sbjct: 2214 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2273 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + E L L E + + +++S+ Sbjct: 2274 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2305 Score = 42.2 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 30/279 (10%), Positives = 84/279 (30%), Gaps = 18/279 (6%) Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 + + + ++ +D +++ E P L L + + Sbjct: 1372 HTKVFPHAEWNIVLQNKPRELDRIFRDEAALACRVRPRHITHLCFDLGSLRATFTVEHSI 1431 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + I +RLQ + + + + + P L + +L + Sbjct: 1432 NISDKDIENRLQHYTFRAMQDL------------YDHRYSPPDGLDALAFENARLRQDRD 1479 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEI 537 + +L + E ++ ++ + L L E Q + Sbjct: 1480 NDQCDILAANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGS 1539 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + L QL+ + + E + + AL + + ++E Sbjct: 1540 EADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERER 1599 Query: 598 IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ ++ + ++ + E L L E + + +++S+ Sbjct: 1600 LQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1638 Score = 42.2 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 63/212 (29%), Gaps = 15/212 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 D ++ + ++ ++KG + + + + E L Sbjct: 1751 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 1810 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544 E ++ ++ + L L E Q + + Sbjct: 1811 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 1861 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L QL+ + + E + + AL + + ++E ++ ++ + Sbjct: 1862 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 1921 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + E L L E + + +++S+ Sbjct: 1922 KGSEADAAKEDNDALRGQLEEANAERERLQSE 1953 Score = 42.2 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 63/212 (29%), Gaps = 15/212 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 D ++ + ++ ++KG + + + + E L Sbjct: 2138 ADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 2197 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544 E ++ ++ + L L E Q + + Sbjct: 2198 Q---------SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKE 2248 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L QL+ + + E + + AL + + ++E ++ ++ + Sbjct: 2249 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2308 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + E L L E + + +++S+ Sbjct: 2309 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2340 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1001 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1060 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1061 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1120 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1121 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1180 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1181 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1217 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1036 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1095 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1096 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1155 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1156 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1215 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1216 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1252 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1071 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1130 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1131 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1190 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1191 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1250 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1251 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1287 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1106 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1165 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1166 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1225 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1226 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1285 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1286 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1322 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1141 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1200 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1201 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1260 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1261 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1320 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1321 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1357 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 2159 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2218 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 2219 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2278 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 2279 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2338 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 2339 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2375 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 2194 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2253 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 2254 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2313 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 2314 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2373 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 2374 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2410 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 2229 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 2288 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 2289 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 2348 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 2349 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 2408 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 2409 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2445 Score = 41.8 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 69/217 (31%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1702 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDAL 1761 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ + L L E Q + Sbjct: 1762 RGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEA 1821 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1822 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1881 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1882 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1918 Score = 41.0 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 26/217 (11%), Positives = 70/217 (32%), Gaps = 11/217 (5%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 R+RLQ ++ +E ++ + +QS L + + + L Sbjct: 1667 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDAL 1726 Query: 489 LTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQ 539 + + E ++ ++ ++ L L E Q + Sbjct: 1727 RGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEA 1786 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L QL+ + + E + + AL + + ++E ++ Sbjct: 1787 DAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQ 1846 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ + E L L E + + +++S+ Sbjct: 1847 SELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 1883 Score = 41.0 bits (94), Expect = 0.55, Method: Composition-based stats. Identities = 21/212 (9%), Positives = 63/212 (29%), Gaps = 15/212 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + + ++ ++KG + + + + + E L Sbjct: 2068 AAKEDNDDDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERL 2127 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544 E ++ ++ ++ L L E Q + + Sbjct: 2128 Q---------SELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKE 2178 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L QL+ + + E + + AL + + ++E ++ ++ + Sbjct: 2179 DNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEE 2238 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + E L L E + + +++S+ Sbjct: 2239 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2270 Score = 41.0 bits (94), Expect = 0.62, Method: Composition-based stats. Identities = 24/222 (10%), Positives = 69/222 (31%), Gaps = 7/222 (3%) Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + ++ + + G+ + NA + + + + + Sbjct: 2015 AERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDND 2074 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLP 534 +LR L + E ++ ++ ++ L L E Q Sbjct: 2075 DDALR-GQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEE 2133 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L QL+ + + E + + AL + + + Sbjct: 2134 KGSEADAAKEDIDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAE 2193 Query: 595 KEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 +E ++ ++ + ++ + E L L E + + +++S+ Sbjct: 2194 RERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERLQSE 2235 Score = 38.3 bits (87), Expect = 3.7, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 66/212 (31%), Gaps = 13/212 (6%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 D ++ + ++ ++KG + + + + E L Sbjct: 1996 ADAAKEDNDALRGQLEEANAERERLQSELEEKGSEADAAKEDNDALRGQLEEANAERERL 2055 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYFLPEEIHQRLCER 544 + + ++ + A +N+ L L E Q + + Sbjct: 2056 QS-----ELEEKGSEADAAKE--DNDDDALRGQLEEANAERERLQSELEEKGSEADAAKE 2108 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L QL+ + + E + + AL + + ++E ++ ++ + Sbjct: 2109 DIDALRGQLEEANAERERLQSELEEKGSEADAAKEDIDALRGQLEEANAERERLQSELEE 2168 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + E L L E + + +++S+ Sbjct: 2169 KGSEADAAKEDNDALRGQLEEANAERERLQSE 2200 >gi|300712756|ref|YP_003738569.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] gi|299126440|gb|ADJ16778.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] Length = 647 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 56/160 (35%), Gaps = 17/160 (10%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQRLCERG--FGELLK 551 + QE+ + ++ + EL S E+ E L +R EL Sbjct: 360 DLRQEKVERRNELTRELEELTAQRKEYTSTRDERAELERALETAVAELTDRTDRISELEA 419 Query: 552 QLDRQVRDAGLWS--ATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEIEKQI 602 + + V + + D+ ++ L + L R+ E +E+Q+ Sbjct: 420 RREELVEKIEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIENLEEQL 479 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 A+ + + + L E+ +I +IE + IE F Sbjct: 480 AERDQL--EARREEINAELEELRTRIERIERE--AIEAFN 515 >gi|238686656|sp|A5DHL9|EIF3A_PICGU RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 110 kDa subunit homolog; Short=eIF3 p110; AltName: Full=Translation initiation factor eIF3, p110 subunit homolog gi|190346559|gb|EDK38672.2| hypothetical protein PGUG_02770 [Meyerozyma guilliermondii ATCC 6260] Length = 891 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 87/297 (29%), Gaps = 19/297 (6%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P +R + L + +R +R A + + N +K Sbjct: 524 PAELVRSQLQKFAYTLSKTVDTIDPENARRLEASREAAVKRAVAGISEEQEEIANRVKVM 583 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + + + + +E + ++ +Q+ S ++ + + Sbjct: 584 DERKRVIDVAKRKQDEEAARLKSERLSAEQKAEQERMLAEQERRSLEKLEREKHLIRERE 643 Query: 479 KPSLREAA----LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E ++ +++ L + I N + + L L + + + Sbjct: 644 KRKIAEEINAKGIIKIDLDNLENLDTDKLRIMQIEQLNKDKKNLEEKLRALSKKTDHTER 703 Query: 535 E---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY------ 585 Q L + ++ ++ A + + + ++ L Sbjct: 704 AFRRYELQYLEKDAEAQIEQEAKNYELVKANKIAKAKKDFEEAHALKERFTRLVPDYSEF 763 Query: 586 ------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 K L + + E + Q+ + + + I L + + Q E +EA Sbjct: 764 KSEINAKNKDKLKQLQAEAKAQLERAKQERIEQIKRERIEELAQRKREQIQAEQEEA 820 >gi|13272546|gb|AAK17202.1|AF335500_1 major plasmodial myosin heavy chain [Physarum polycephalum] Length = 2148 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 90/284 (31%), Gaps = 11/284 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 +KL+ L V E + R +R++LE L + ++ Sbjct: 1291 QEQKTKQQLEKAKKLLETELHAVQGQLDDEKKGRDIVDR-KRSDLESELADLREDFEEAL 1349 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + +LQ +++ +K QS + + + + Sbjct: 1350 SARKVIGDAKSKLQSDYEELKKIAESDAAARQKAQEQVKILELQNADSQSLVQDAEAAAE 1409 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRY------DNNELQKLWSFLFSDFVEQKYFL 533 R+ L + + ++ A +R+ + EL++ + Sbjct: 1410 KIERQRRTLEADLQDVQE-KLDEEQKARVRFQKQLAKTDEELRQAKLKIDDLTNATSDQY 1468 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + L+ LD + E + D++ ++A++ + + + Sbjct: 1469 IALKRLQEENSNQHRELEALDEKTAQWNRLRKQAEVQLEDLKAQLEEAISAKLK---VEK 1525 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 QK ++E ++ + + + + L + ++ +++ Q A Sbjct: 1526 QKRDLENKVEDLESAADVNSANVHPDELRKKQQEVDELKKQLAA 1569 >gi|296100767|ref|YP_003610913.1| putative DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055226|gb|ADF59964.1| putative DNA helicase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 430 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 45/151 (29%), Gaps = 10/151 (6%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + E L+ + + ++ + K + + + RG + L+ Sbjct: 1 MLDNDRWDEVALRLSADDFFQKVHKVIYQEMTRLVAAGKPLDLITLSESIESRG-KDALE 59 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV--TAKG 609 QL A L T A Y +A R RQ I +I + T Sbjct: 60 QLGGFAYLAELSKNTPSAA---NIVAYCDIVARTSRA----RQLASIGAEITESVRTPGT 112 Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + ++ + + E ++EG Sbjct: 113 DIDRVMETAEQKITRLAERAEPEQGVTLLEG 143 >gi|293392261|ref|ZP_06636595.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952795|gb|EFE02914.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 468 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 10/162 (6%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 S + + + E A+L +++ + + + + + E + + Sbjct: 2 ASKNSPPAKEKNTTNLNIPPHSIEAEQAVLGSILLNNFYWDDVAENVVKEDFYRFEHRLI 61 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + +Q + Q L E+++Q+ A L + T A Sbjct: 62 FEEMEKLIAQQAPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 A A R + + R+ + +IAQ + + + L+ Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153 >gi|149748805|ref|XP_001490094.1| PREDICTED: CDC42 binding protein kinase alpha (DMPK-like) isoform 1 [Equus caballus] Length = 1719 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 50/124 (40%), Gaps = 15/124 (12%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579 + L + E +++L +QVR++ E ++ ++ Sbjct: 472 LQYSTADGPLTASK---DLEIKNLKEEIEKLRKQVRESSHLEQQLEEANSVRRELDDAFR 528 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630 Q A K+ + L +++E++ K++ Q + + + + + + E++ ++ + Sbjct: 529 QIKAYEKQIKALQQEREDLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588 Query: 631 IESQ 634 + +Q Sbjct: 589 LHAQ 592 >gi|261867672|ref|YP_003255594.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413004|gb|ACX82375.1| replicative DNA helicase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 468 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 10/162 (6%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 S + + + E A+L +++ + + + + + E + + Sbjct: 2 ASKNSPPAKEKNTTNLNIPPHSIEAEQAVLGSILLNNFYWDDVAENVVKEDFYRFEHRLI 61 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + +Q + Q L E+++Q+ A L + T A Sbjct: 62 FEEMEKLIAQQAPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 A A R + + R+ + +IAQ + + + L+ Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153 >gi|170061198|ref|XP_001866132.1| myosin heavy chain [Culex quinquefasciatus] gi|167879533|gb|EDS42916.1| myosin heavy chain [Culex quinquefasciatus] Length = 1871 Score = 46.8 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 ++ E E + ELE +++ I++++ R + +LQ Q + Sbjct: 808 EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSNEKKKLQINIQDLEEQ 867 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + Q + M+ + + + L+E ++ N + + Sbjct: 868 LEEEEAARQKLHLEKVQLDAKLKKMEEEVALTEDQNQKLLKEKKIIEERANDLSQTLAEE 927 Query: 503 QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +E LA ++ + + +L L D +++ + E + + QV Sbjct: 928 EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQETDRSKRKIETEVADLKEQINERRIQV 987 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + E + + A + + R+ E +I + + ++ Sbjct: 988 EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKVQRELESQLAEIQEDLEAEKLARSKAE 1047 Query: 618 ISILHEVHIQIHQIESQ 634 +++ ++ ++++ Sbjct: 1048 -KQKRDLNEELEALKNE 1063 >gi|322789355|gb|EFZ14667.1| hypothetical protein SINV_10357 [Solenopsis invicta] Length = 1714 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 36/283 (12%), Positives = 93/283 (32%), Gaps = 6/283 (2%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 + R Y + EK ++ ++ E E + ELE L + I+ Sbjct: 642 HSAQEYERKYQQAMAEKTVLAEQLQAEVELCAEAEEMRVRLVARKQELEEILHDLEARIE 701 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +++ R + +LQ + +K + Q + ++ L Sbjct: 702 EEEERSAALTQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSDD 761 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531 + + L+E +L N + + +E L+ ++ + + L L D +++ Sbjct: 762 TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 821 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + L + QV + L E + V + A + + Sbjct: 822 VDRSKRKVETEVSDLKDQLAERKTQVEEMQLQLGKREEELNQVMAKMDEEGAAKAQAQKA 881 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R+ E ++ + + E +++ ++ ++++ Sbjct: 882 LRELESQLAELQE-DLEAEKAARGKAEKQKRDLNEELEALKNE 923 Score = 38.3 bits (87), Expect = 3.6, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 74/226 (32%), Gaps = 17/226 (7%) Query: 418 QKLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + R + + ++ + + + ++ + + + Sbjct: 1476 ENERDELQEEVNNNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIVI 1535 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYF 532 + E + L +H +L+ Q +EL + + K + + + Sbjct: 1536 EQLTTDLATERSTTQKLESHKMLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNL 1595 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + ++ ++L++++++ L N ++ QA + R + L Sbjct: 1596 DEQLETEAKERFAQQKINRKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNARMKALK 1652 Query: 593 RQKEEIEKQIAQ-------VTAKGEA--EKTAILISILHEVHIQIH 629 RQ +E E++I++ + + E L L + ++ Sbjct: 1653 RQLDEAEEEISRHKTMKRKAQREMDDMIESHEELTRELTHLKNKLR 1698 >gi|307269285|ref|ZP_07550638.1| CHC2 zinc finger protein [Enterococcus faecalis TX4248] gi|306514382|gb|EFM82944.1| CHC2 zinc finger protein [Enterococcus faecalis TX4248] Length = 399 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 21/141 (14%) Query: 2 NYPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 Y + + +L I ++ G + R N + HD SF N K Sbjct: 3 KYNPNRLVELAKQKSILDVAGMLGMQLKRVGRNYQWAE-------HD----SFVINPDKN 51 Query: 61 FYYCFSCHV---KGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL 117 ++ FS D + + + SF E++ L + V I K K + + Sbjct: 52 YFSWFSRGNEYLGKDVIEMVKVVNNVSFKEALHFL-----LEAEVGTFDITKVPKSKPFV 106 Query: 118 IRLIE-VATDFFHHSLKNARD 137 ++ E D+ LK R Sbjct: 107 YKVKETKTFDYARKYLKEERG 127 >gi|284051735|ref|ZP_06381945.1| replicative DNA helicase [Arthrospira platensis str. Paraca] Length = 412 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 52/162 (32%), Gaps = 10/162 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 ++ L S L + + E A+L ++ P + L + + Q ++ Sbjct: 2 AESLPISPLSNDRNPPQNIEAEEAILGGILLDPEAISRVADILKPEHFAISAHQSIYRAT 61 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + ++ K + L + Q+ AG E + Sbjct: 62 LTLHLQGKPTDLMTVTTWLADH----------NQLDAAGGQMKLAELVDRTISAVNIDQY 111 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 +L + L RQ + +++AQ+ + E +L + Sbjct: 112 SLLVIDKFLRRQLIQAGQEVAQLGYQTNMELEKVLDQAEQRI 153 >gi|154503460|ref|ZP_02040520.1| hypothetical protein RUMGNA_01284 [Ruminococcus gnavus ATCC 29149] gi|153795560|gb|EDN77980.1| hypothetical protein RUMGNA_01284 [Ruminococcus gnavus ATCC 29149] Length = 447 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 45/153 (29%), Gaps = 12/153 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ + E A++ ++ + + L + + L+ + F K Sbjct: 6 KRILPHSTEAEQAVVGAMLMDKDAIMVAAEMLTGEDFYQSAYGMLFDAMVELFQAGKPVD 65 Query: 534 PEEIHQRLCERGFGELLKQLD----------RQVRDAGLWSATTEANIVDVRQGYQQAL- 582 + + L E+ + L+ E + + + Sbjct: 66 LITLQEHLKEKNAPPEISGLEFARELLVNAQTSANIKYYAEIVREKATLRKMIKINEEIA 125 Query: 583 -ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 Y + L + EK+I ++ G +++ Sbjct: 126 NNCYLENQPLDVIMDAAEKRIFELAQHGNSQEY 158 >gi|149003766|ref|ZP_01828598.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147758212|gb|EDK65214.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 320 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + + + Sbjct: 159 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 218 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E+ Q++ + A+ + ++ ++ L ++ L + EE+E Q Sbjct: 219 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 277 Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q+ +A+K L + L ++ + +EAM+E Sbjct: 278 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 312 >gi|78045358|ref|YP_361608.1| replicative DNA helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78033862|emb|CAJ19861.1| DnaB-like helicase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 461 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 22/142 (15%), Positives = 46/142 (32%), Gaps = 6/142 (4%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 +D QR + + K+ E ++L L+ P L L + + + + Sbjct: 2 QDGGTKRQRGADGDVARLKIPPHSVEAEQSVLGGLMLAPETLDIVKDLLVEEDFYRRDHR 61 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 ++ + + + + + E+G QL+ A + + Sbjct: 62 LIYRSICELDEKGQPYDAVTMGTWFEEQG------QLELVGNGAYMIELASTVPSAANIA 115 Query: 577 GYQQALALYKRFRLLSRQKEEI 598 GY + + R R L EI Sbjct: 116 GYAKIVRDRARLRELIEHGTEI 137 >gi|255080776|ref|XP_002503961.1| kinesin heavy chain [Micromonas sp. RCC299] gi|226519228|gb|ACO65219.1| kinesin heavy chain [Micromonas sp. RCC299] Length = 956 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 63/196 (32%), Gaps = 9/196 (4%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + ++ L + + + N + S + S++ L S R Sbjct: 288 ERVKKTLSEGIRFSEATNINTSLLAFGNVMQALAEKRSHVPYRDSMLTKILESSLSGRSR 347 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 LL + P + + + + + ++ + + F P ++ + L E Sbjct: 348 TALLVCLA-PELEHSH-ETTTSLEFASRAMR--VTTVPVVHSANVEFDPADLTRELAEAA 403 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----LSRQKEEIEK 600 L+++ +V + +A + + + R L R+ E E Sbjct: 404 SNSALQKMGEEVLSSRQMLDREKAERAEKEDHLCDLITRERAERADVEEKLRRRLAEAEA 463 Query: 601 QIAQVTAKGEAEKTAI 616 +IA ++ K KT Sbjct: 464 EIASLSIKLSDAKTEA 479 >gi|10440566|ref|NP_066300.1| leucine zipper putative tumor suppressor 1 [Homo sapiens] gi|46396556|sp|Q9Y250|LZTS1_HUMAN RecName: Full=Leucine zipper putative tumor suppressor 1; AltName: Full=F37/esophageal cancer-related gene-coding leucine-zipper motif; AltName: Full=Fez1 gi|4572464|gb|AAD23834.1|AF123653_1 FEZ1 [Homo sapiens] gi|4572476|gb|AAD23840.1|AF123659_1 FEZ1 [Homo sapiens] gi|49901771|gb|AAH75006.1| Leucine zipper, putative tumor suppressor 1 [Homo sapiens] gi|49901992|gb|AAH75007.1| Leucine zipper, putative tumor suppressor 1 [Homo sapiens] gi|119584157|gb|EAW63753.1| leucine zipper, putative tumor suppressor 1, isoform CRA_b [Homo sapiens] gi|119584159|gb|EAW63755.1| leucine zipper, putative tumor suppressor 1, isoform CRA_b [Homo sapiens] gi|167774069|gb|ABZ92469.1| leucine zipper, putative tumor suppressor 1 [synthetic construct] Length = 596 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 81/250 (32%), Gaps = 29/250 (11%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R + + + L + G K + + SQR Q ++ Sbjct: 279 KLQRSFEEKELASSLAYEERPRRCRDELEGPEPKGGNKLKQASQKSQRAQQVLHLQVLQL 338 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQK--------------LWSFL 522 ++ + L +L+ +L+ + + + L++ L L Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQL 398 Query: 523 FSDFVE--QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 E K + +L + G + L+ +R GL E +++ Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIH-QI 631 + +A L ++ LL ++ +E+ Q A G E L L + ++ + Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMGPPTFPEDVPALQRELERLRAELREER 515 Query: 632 ESQEAMIEGF 641 + + M GF Sbjct: 516 QGHDQMSSGF 525 >gi|261405193|ref|YP_003241434.1| hypothetical protein GYMC10_1341 [Paenibacillus sp. Y412MC10] gi|261281656|gb|ACX63627.1| protein of unknown function DUF214 [Paenibacillus sp. Y412MC10] Length = 1104 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 40/295 (13%), Positives = 89/295 (30%), Gaps = 43/295 (14%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 K A E + + E + + + + + L + + D + Sbjct: 232 YDEKISRHKEAVELALEAMPQERLAEIRAEGQKKLDEATHKIEDAKRQLADAEQELTDAR 291 Query: 420 LR-----YYYSQAIRDRLQQLFQKYI------TEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 L+ Y + +L Q E S K+N + +Q + Q Sbjct: 292 LKLNEGEQTYRDGVNKLQAELAQGQAKLDAAEQELSQGRAELKRNRQKLEQGRNQLKTGQ 351 Query: 469 SSLVKGKLSKKPSLREAALLLTLIN-----HPAIL--QEQYQELADIRYDNNELQKLWSF 521 S L + K P L + L + P ++ +++ + L+ + + +L + + Sbjct: 352 SQLDQQKAELAPKLAQGQQLAKALQQISGLDPEVIPDEQRQELLSAAQSADPKLGAVAAG 411 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + Q + LD +A+ +++ G Sbjct: 412 FMD-----GALDGAALRQ-----AASAFQRGLDEASLQLDQAKQKLDASEAELKDG---- 457 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E E+Q+AQ A + T L + E ++ +++ A Sbjct: 458 ----------QAKLREAERQLAQGEASWKQG-TEELAAARREGEAKLANAKAELA 501 >gi|329955629|ref|ZP_08296537.1| hypothetical protein HMPREF9445_01386 [Bacteroides clarus YIT 12056] gi|328526032|gb|EGF53056.1| hypothetical protein HMPREF9445_01386 [Bacteroides clarus YIT 12056] Length = 318 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80 Y ++ N W PF +E SF N + +Y F G + L A Sbjct: 20 YSPVKQQGINL-----WYKSPFREETEASFKVNTEREQWYDFGLGKGGGIIELAAHLYAT 74 Query: 81 LGCSFIESVQRLAAI 95 +I ++R+A Sbjct: 75 DHVPYI--LKRIAKQ 87 >gi|325693981|gb|EGD35899.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK150] Length = 641 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + L + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALRE---ETEQTSLDKPDPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ EA A + L E QI Q+ + +EAM+E Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633 >gi|163782453|ref|ZP_02177451.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp. 128-5-R1-1] gi|159882486|gb|EDP75992.1| ATPase subunit of ATP-dependent protease [Hydrogenivirga sp. 128-5-R1-1] Length = 1002 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-----LYKRFRLLSRQKEE 597 ER L +++ + + + +Q L L + + L ++ EE Sbjct: 548 ERKLKALDEEIMKANLEGDYEKEAQLKVQKAQLEKEKQELTEKLGGLDIKVKELKKKIEE 607 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 ++K+I + G+ E+ A L + ++ +ESQ+A Sbjct: 608 LDKEIMKAAESGDYEREAQLKIEKVNLEKELKALESQKA 646 >gi|325860168|ref|ZP_08173293.1| hypothetical protein HMPREF9303_0579 [Prevotella denticola CRIS 18C-A] gi|325482255|gb|EGC85263.1| hypothetical protein HMPREF9303_0579 [Prevotella denticola CRIS 18C-A] Length = 303 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 14/43 (32%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLS 75 + P EK SF N +Y F G+ ++ Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNIIT 66 >gi|255575271|ref|XP_002528539.1| calmodulin binding protein, putative [Ricinus communis] gi|223532041|gb|EEF33851.1| calmodulin binding protein, putative [Ricinus communis] Length = 1261 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 12/298 (4%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + +GE+ ++ + + ++ L + N E Sbjct: 560 LHIFQFETKQGEEVCVALQTHINDVMLRRYSKARSTASGLVNGDLSNTFKPPN--VEAYE 617 Query: 406 IHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 ++ I++ + + + D+ +Q K E G + ++ + + Sbjct: 618 KRVQELSKSIEESQKNTDRLLEDLHDKQRQEV-KLQEELEGLKDSLRFEKQNLAEVASDR 676 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLT-LINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 ++S+ + + + +LRE + L ++ E + I +N L L L Sbjct: 677 DRLRSTCAEKDTALQAALREKRNMEIRLATLDNLVAEGNAKKDLIGTNNQVLHNLQDEL- 735 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QAL 582 ++ + +E +RL + L +++ R + + N R + Q + Sbjct: 736 -KLRNEELHVAKENMKRLTDEKVS-LEQKIIRLEKKKVEEMEFLQKNSEQERNTLKLQVI 793 Query: 583 ALYKRFRLLSRQKEEIEK--QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 L K+ ++R + I L L E+ I + Q A I Sbjct: 794 ELEKKLEGVTRDLASAKSTLAIRDADLATLQNNLKEL-EELREMKEDIDRKNEQTAAI 850 >gi|118431313|ref|NP_147686.2| putative ABC transporter, substrate binding protein [Aeropyrum pernix K1] gi|116062636|dbj|BAA80034.2| putative ABC transporter, substrate binding protein [Aeropyrum pernix K1] Length = 490 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 10/128 (7%) Query: 515 LQKLWSFLFSDFVEQKYFLP--EEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATT 567 ++ L S + + EEI + L E ++ + + + Sbjct: 26 FYAIYQELASLRSQVEGLNTRYEEISESLEEVQGAFESSRGDIESIASSLESIQDRVSKI 85 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVH 625 E + A+ + L++Q E+++ +I + G E+ L L ++ Sbjct: 86 EERLGSA-ATQSDLDAVARELASLTQQLEDLQARIQALEESGAEAGERLDQLAMALQDLQ 144 Query: 626 IQIHQIES 633 ++ +E Sbjct: 145 ARLASLEE 152 >gi|332881187|ref|ZP_08448843.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680861|gb|EGJ53802.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 943 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 101/341 (29%), Gaps = 21/341 (6%) Query: 47 DEKTPSFHCNDSKGF----YYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIAGVPLP 101 D+KT S H + + F KG + + ++ C+ E+++ L A VPLP Sbjct: 46 DDKTGSCHIHQRNSTAPYTFTDFGVDSKGLNAIDYVQQRDHCTAFEALKTLCAAYSVPLP 105 Query: 102 VVDPKIEKKEKIQTDLIRL----IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMF 157 K + + A F H L + Sbjct: 106 NGAKIQPKVSFSSDVTEEVGTWSVTFADTFQHTKYLRRLFPYYTPELLNAYHFKEITDYT 165 Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQV 217 +G + F + + A D+ + F S ++ Sbjct: 166 TIGLNDKGNRYRKTTQSTPEFPIFGYDKGDFVKIYQPLAQKGDKLNPKHSFVGGKSGNRI 225 Query: 218 IAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILV 277 + R L + E + K K L + + ++ +I+ Sbjct: 226 VYGWDRLLRLVDYEAIKTLNEELKNTKSKEL----------RTELTAELNALKLDTVIIA 275 Query: 278 EGYMDVLSLCQAGVQNVVSSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAID 336 G D +++ G + + T + + + L L+ I D D G+R A + D Sbjct: 276 TGGSDGINIASLGYNVIWFNSETEIINAEEYQQLSLLARNIYYVPDLDATGVRQALQVAD 335 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVE 377 + + + + +D ++R + + L Sbjct: 336 TFIDIRLVWL-PKELKENGKKDFADWLRLHHTAGQDALQSR 375 >gi|315641015|ref|ZP_07896098.1| hypothetical protein HMPREF9088_1423 [Enterococcus italicus DSM 15952] gi|315483184|gb|EFU73697.1| hypothetical protein HMPREF9088_1423 [Enterococcus italicus DSM 15952] Length = 621 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 12/80 (15%) Query: 45 FHDEKTPSFHCN--DSKGFY--YCFS-----CHVKGDHLSFLSALLGCSFIESVQRLAAI 95 FH E PS + G Y CFS C G+ +S L L S IE V L + Sbjct: 259 FHKEDNPSASVFYAEEHGIYLYKCFSASNKYC---GNIISLLERYLKISSIEVVNLLVEL 315 Query: 96 AGVPLPVVDPKIEKKEKIQT 115 G + + K Q Sbjct: 316 TGSTVTNTSQLGQSKFNAQK 335 >gi|257791923|ref|YP_003182529.1| hypothetical protein Elen_2177 [Eggerthella lenta DSM 2243] gi|257475820|gb|ACV56140.1| protein of unknown function DUF214 [Eggerthella lenta DSM 2243] Length = 1177 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 11/224 (4%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476 + DR++ L + + K+ ++ +L + Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYEGERADAQSQLDDAKRQLDDA 311 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPE 535 + + E L + + E + A + ++ +++ ++ Sbjct: 312 AATIAASEQELADGQAAYDSGASELASQRASAQAQLDDAERQIADGQAQLDAQRPQLDDA 371 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + L D S +A I + G A A R + + Sbjct: 372 AGQLQAARAQWQQGADALAAAWGDWQRRSDELDAGITRAQAGVADAAAGVDR---IQKGI 428 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + +E+QI Q+ +A+K A L + + Q + +Q A+++ Sbjct: 429 DALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472 >gi|134026278|gb|AAI34825.1| LOC100049141 protein [Xenopus laevis] Length = 624 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 74/219 (33%), Gaps = 7/219 (3%) Query: 419 KLRYYYSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Y + + LQ + E G R + + + + + Sbjct: 285 IWKKRYEEEHKRGLWLQGDLMRKTHEIEGLLEENHSEKRRIREMVKKLKDLLDGPTEDQT 344 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSF-LFSDFVEQKYFLP 534 + ++ +LL+L +Q ++ L +L+ L L ++ Sbjct: 345 ATVDDIQTTDILLSLSRAVEQIQAIKEQKLKAQDLQEEKLKSLADVTLAGHHEATRHLQD 404 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 E + + E + +L+ + + L + E + + L ++ L+R+ Sbjct: 405 EVVAAKDRENVAQRRVAELEGHLENMRLVLSQFE-TRKRIDSTVVE--DLQEQINELTRE 461 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +EE+ K++ + KT L + + + + ++ Sbjct: 462 REELLKRLQKQEENFYKSKTEELNNDQNTLQSNVRVLKE 500 >gi|301057437|ref|ZP_07198545.1| conserved domain protein [delta proteobacterium NaphS2] gi|300448460|gb|EFK12117.1| conserved domain protein [delta proteobacterium NaphS2] Length = 301 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 221 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 270 >gi|269792424|ref|YP_003317328.1| peptide chain release factor 2 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100059|gb|ACZ19046.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 374 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 E+ L G + +L +V G W + +V + Q + F L R+ Sbjct: 19 ELRDSLDLEGLDRKIGELMERVSSDGFW---EREDSTEVARELSQLQQRRESFSALEREM 75 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 E++E + A + + + E+ ++ + + Sbjct: 76 EDLETLAELLQAGEDEDLSREFYDRAAEMERRLERTQ 112 >gi|241764691|ref|ZP_04762703.1| replicative DNA helicase [Acidovorax delafieldii 2AN] gi|241365861|gb|EER60510.1| replicative DNA helicase [Acidovorax delafieldii 2AN] Length = 472 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 63/186 (33%), Gaps = 19/186 (10%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + + + ++ E+++L L+ L D + +E Q +++ + Sbjct: 14 APPSVDREIAQLRVPPHSIEAESSVLGGLLLDNNAWDRVGDLLVDSHFYRHEHQMIYAAI 73 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + K + + L G + L L + V A E R Sbjct: 74 GALINASKPADVITVFEHLQNLGKAQEMGGLAYLNSLAQYVPSASNIRRYAEIVRE--RA 131 Query: 577 GYQQALAL---------YKRFRLLSRQKEEIEKQIAQVTAKGEAEK--TAILISILHEVH 625 ++ + + + + R +E E +I + +G K L +++ ++ Sbjct: 132 ILRKLVTASDDIATNAFNPQGKTVERILDEAEAKIFAIGEEGSRTKQGFQSLDTLVIDLL 191 Query: 626 IQIHQI 631 ++ ++ Sbjct: 192 DRVQEM 197 >gi|160916097|ref|ZP_02078304.1| hypothetical protein EUBDOL_02124 [Eubacterium dolichum DSM 3991] gi|158431821|gb|EDP10110.1| hypothetical protein EUBDOL_02124 [Eubacterium dolichum DSM 3991] Length = 449 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 52/172 (30%), Gaps = 20/172 (11%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQE-LADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + E +LL ++ +P++ Y + L + + +++++ + K Sbjct: 2 SRELPHSNEAEQSLLGAMMIYPSVAAIAYDQGLEAKDFYLDIHKRIYTAMQDISDAGKPI 61 Query: 533 LPEEIHQRLCERGFGELLKQLD-------------------RQVRDAGLWSATTEANIVD 573 + RL + L+ D ++ E + Sbjct: 62 DVTTLVSRLQDLEQLNLVGGADYIIKLSDTAISSANSSYYIEIIKSRAHLRRLIETAELI 121 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 G+ A L + R+ + + K + + ++ L ++ Sbjct: 122 AEDGFDTASDLDEVMDKAEREILNVTRSRRATDFKSSRDVVSNVMQELMKLR 173 >gi|156932391|ref|YP_001436307.1| hypothetical protein ESA_00167 [Cronobacter sakazakii ATCC BAA-894] gi|156530645|gb|ABU75471.1| hypothetical protein ESA_00167 [Cronobacter sakazakii ATCC BAA-894] Length = 1110 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 26/221 (11%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + KN + Q + + Q++L + K S + + + ++ N P Sbjct: 24 DEKQIAQELEQAKAAKNQPDQAQVVEALQAAQNALEERKASLERAKQYQEVID---NFPK 80 Query: 497 ILQEQYQELADIRYDNNELQ--------KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + Q Q+L ++ + + L + + E ++ R + Sbjct: 81 LSQSLRQQLNNL--RDEPRRVPTGLTTDALNQEILQVSSQLLEKSREAQQEQDRAREIAD 138 Query: 549 LLKQLDRQVRDAGLWSATTEA---------NIVDVRQGYQQALALYKRFRLLSRQKEEI- 598 L QL +Q DA E + + QQA + + R+ + ++ Sbjct: 139 SLSQLPQQQTDARRQLNEMERRAGAPTGSNALGAAQLLSQQAESSQLKARVDELELAQLS 198 Query: 599 ---EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ A+ +++ L + L + Q++ QEA Sbjct: 199 ASNRQELARLRAELAQKQSEQLDAYLQALRNQLNSQRQQEA 239 >gi|54035818|sp|Q7X2S8|CLPB_MEIRU RecName: Full=Chaperone protein ClpB gi|31872394|gb|AAP59445.1| ClpB-like protein [Meiothermus ruber] Length = 854 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 16/180 (8%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKL 518 ++L + + +K E ++ P++ ++E+Y+ +R + L Sbjct: 305 ATTLDEYREIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAA 364 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 ++K L+ + E +++ Sbjct: 365 AQLSHRYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKK-- 422 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIES 633 + R L ++ ++E++I + A+ EAE+ L EV QI Q E Sbjct: 423 ETDAESKFRLGELEKEIADLEEEIRKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAER 482 >gi|325965071|ref|YP_004242977.1| hypothetical protein Asphe3_37470 [Arthrobacter phenanthrenivorans Sphe3] gi|323471158|gb|ADX74843.1| hypothetical protein Asphe3_37470 [Arthrobacter phenanthrenivorans Sphe3] Length = 779 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 69/214 (32%), Gaps = 19/214 (8%) Query: 432 LQQLFQKYITEHSGYGRYWKK-NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L +L S + + + G L+Q+ + + ++ + Sbjct: 569 LDELTAALPGLESDFQQAQLAIMEQQAVVDGKKWELLQADAARSAANTAVEEKQGEIAAL 628 Query: 491 LINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L P + L Q ++D+ + L +L L ++ ++ + Sbjct: 629 LGQLPELQKSLDVANQAVSDLSGEIARLNQLADSLVDKLT--------GLNSQITAKE-- 678 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 ++ A + +V L + + L Q ++++ + A Sbjct: 679 ---AEILSLQNRVAPLVAELDRLNGEVSAAEAHLAGLQSQLQGLDTQLTAAQEKLRDLQA 735 Query: 608 KGEAEKTAILISILH--EVHIQIHQIESQEAMIE 639 + + K+ + L ++ Q+ ++ Q A I+ Sbjct: 736 QKKPAKSLVEAQRLTVSDLQAQLGSVQQQIAAID 769 >gi|149751454|ref|XP_001492565.1| PREDICTED: similar to cingulin (predicted) [Equus caballus] Length = 1196 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 35/245 (14%), Positives = 86/245 (35%), Gaps = 38/245 (15%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q + +R + Q+ E + R R + + K K ++ P + Sbjct: 402 LQELLERRKGEAQQSTKELQNMKLLLDQGERVRHG---LETQVMELQDKLKQAQGPEPAK 458 Query: 485 AALLLTLINHPAILQEQYQ---ELAD-IRYDNNELQKLWSFLFSDFV----------EQK 530 L+ L+ +LQE + ++ + +R EL L L + +Q Sbjct: 459 QVLMKDLLETRELLQEVLEGKQQIEEQLRLRERELTALKGALKEEVASRDQEVEQVRQQY 518 Query: 531 YFLPEEIHQRLCERGFG----------------ELLKQLDRQVRDAGLWSATTEANIVDV 574 E++ + + + EL ++L+ + G W + + N ++ Sbjct: 519 QRDTEQLRRSMQDATQDHATLEAERQKMSALVRELQRELEETSEETGHWQSMFQKNKEEL 578 Query: 575 RQGYQQALALYKRFRLLSRQKE----EIEKQIAQVT-AKGEAEKTAILISILHEVHIQIH 629 R Q+ L L + + +++++ Q + G+ + L L ++ Sbjct: 579 RATKQELLQLRMEKEEMEEELGEKMEALQRELGQARASAGDVRQVEELKKELCRTQEELK 638 Query: 630 QIESQ 634 +++++ Sbjct: 639 ELQAE 643 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 91/268 (33%), Gaps = 25/268 (9%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY--IT 441 W E E S + E + + D+ + + RLQ L Q+ Sbjct: 888 KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLAQRLQGLEQEAETKK 947 Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA--ALLLTLINHPAILQ 499 K + + ++ + S V+ + RE L L+ + Q Sbjct: 948 RSQDDRTRQLKGLEEKVSRLEAELDEERSTVELLTDRVNRGREQVDQLRTELMQERSARQ 1007 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + N +L+ + + P +L EL ++L + R+ Sbjct: 1008 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESLN-RELQERLQAEERE 1060 Query: 560 AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608 + +T V++ Q L R + L RQ +E E++I ++ Sbjct: 1061 KTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLD-- 1118 Query: 609 GEAEKTAILISILHEVHIQIH-QIESQE 635 G +K + HEV+ Q+ +I++ E Sbjct: 1119 GLRKKAQRELEEQHEVNEQLQARIKALE 1146 >gi|123967097|ref|YP_001012178.1| DnaB replicative helicase [Prochlorococcus marinus str. MIT 9515] gi|123201463|gb|ABM73071.1| DnaB replicative helicase [Prochlorococcus marinus str. MIT 9515] Length = 460 Score = 46.4 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 18/199 (9%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + + SS G + + E A+L ++ P + + + N Sbjct: 7 PNNGSNKNFKKDYSSENAGLVPPQNIQAEEAILGGILLDPDAIGRIADLIKPEAFYINAH 66 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 Q ++ + K + L + G L++ ++ L + Sbjct: 67 QDIFKTALMLHTQGKPTDLTSMSAWLADNG------SLEKIGGNSKLVELVENVSSTASI 120 Query: 576 QGYQQALALYKRFRLLSRQKEEIEK----QIAQVTAKGEAEKTAILISILHEVHIQ---I 628 + ++ R L R E+ + Q + + + + E+ + Sbjct: 121 EQVANLISDKFIRRQLIRSGNEVIQLGFDQTQETNEVLDKAE-----QKIFEISQEKPTK 175 Query: 629 HQIESQEAMIEGFGKMSGR 647 ++ E + F ++ R Sbjct: 176 GLTQAAEILTSTFNEIESR 194 >gi|331703238|ref|YP_004399925.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|331703319|ref|YP_004400006.1| transmembrane protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801793|emb|CBW53946.1| Hypothetical protein, predicted transmembrane protein (part of ICE) [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801874|emb|CBW54027.1| Conserved hypothetical protein, predicted transmembrane protein (part of ICE) [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 N IK Q R + + ++QL Q S + R + + + + S+ Sbjct: 590 FNKIKSQLERDLV--RLSNEIKQL-QSSNKSLSTKSEELESTKRRIENELETIKKESLSI 646 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K K + E T+ N+ +L+ + +E+ I NNEL +L + S E++ Sbjct: 647 NKQLEEKVREIDENK--QTISNYSQLLETRLKEIEKI---NNELSELQASNSSLEKEKQK 701 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E + EL+K ++++ S + + + + Y L+ +++ Sbjct: 702 LNEEISSFKSESSSNKELIKSKEQELNKYKETSDKIKKQLEEKQNEYYDLLSKFQKQ--- 758 Query: 592 SRQKEEIEKQIAQVTAKGE----AEKTAILISILHEVHIQIHQIESQEAMIE 639 ++ +++++++A K E + L L + ++ +S A ++ Sbjct: 759 KQELDQLKQKLASTVDKSEINQLQSRIEELNQELDKKKKELAAFKSSLATLD 810 >gi|238897885|ref|YP_002923564.1| replicative DNA helicase; chromosome replication; chain elongation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465642|gb|ACQ67416.1| replicative DNA helicase; chromosome replication; chain elongation [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 467 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 45/140 (32%), Gaps = 3/140 (2%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 +K + L + KL E ++L L+ + + +I + + +++ Sbjct: 4 KKSQTTMLKDQQIEMLKLPPHSIEAEQSVLGGLMLDNERWDNVSERVGNIDFFSLPHRRI 63 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + + + L ++G L+++ A L + Sbjct: 64 FMAMQRLVQKNAPIDLVTLSDALEQKGD---LEKVGGFAYLAELAKNIPSTANISAYADI 120 Query: 579 QQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 121 VRERAIVREMLSVTHEIADA 140 >gi|217967474|ref|YP_002352980.1| trigger factor [Dictyoglomus turgidum DSM 6724] gi|217336573|gb|ACK42366.1| trigger factor [Dictyoglomus turgidum DSM 6724] Length = 431 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 59/202 (29%), Gaps = 19/202 (9%) Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 ++ F + E G+ + + + + L K S RE Sbjct: 217 IEISFPEDFYEKELAGQSLPLKWKVKKIWRYEKPDQEIFLQKVNASSIEEFREKV----- 271 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-EIHQRLCERGFGELL 550 ++E+ ++L + KL+S + +E P L E E L Sbjct: 272 ---RESIKEEREKLEE--------DKLFSQILDKILENTELDPPLSYVHYLAENILREFL 320 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 +L+++ + + + + + + ++ + EIE Sbjct: 321 TELNKKGVQLEDYLSQRGISKDEFVNNVIEDARKRIKIEMILDKIAEIENINISDEEINN 380 Query: 611 --AEKTAILISILHEVHIQIHQ 630 E E+ ++ + Sbjct: 381 VIKEIAENEGKEFKEIKRELER 402 >gi|289209092|ref|YP_003461158.1| replicative DNA helicase [Thioalkalivibrio sp. K90mix] gi|288944723|gb|ADC72422.1| replicative DNA helicase [Thioalkalivibrio sp. K90mix] Length = 461 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 10/168 (5%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + ++ E ++L L+ A + D + ++ + ++ + Sbjct: 3 PPGMNRPMTPNPRIPPHSEEAEQSVLGGLMLDNAAWDRVADRITDEDFYRHDHRLIYRAV 62 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 S F + ++L +L+ A L E Y + Sbjct: 63 ASLAERNAPFDMVTVSEQLERT------SELEDAGGMAYLGRLAAETPSAANIVAYADIV 116 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R R + R + +IA + + L+ + +I + Sbjct: 117 ----RERSILRSLISVGTEIADSAFVPDGRDSKELLDQAEQKVFRIAE 160 >gi|73973983|ref|XP_532255.2| PREDICTED: similar to myosin, heavy polypeptide 8, skeletal muscle, perinatal [Canis familiaris] Length = 1083 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 48/361 (13%), Positives = 111/361 (30%), Gaps = 36/361 (9%) Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 L L ++ + Y+ + + ++ RG DP Sbjct: 630 CLLSLGCDVMARERSNFESYSMCYEHVLEHARQKLCQKEQELDIIRRGSDPPEDGAGQVA 689 Query: 369 TAFEKLIVE------SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL-- 420 +I+E L ++ +E L L HIK++ Sbjct: 690 ELSHNMIMEITALRARLTDLEEENLNLKHQIRKEVQEEYEALVQALFVTCLHIKEKLDEN 749 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK-GPSQRLMQSSLVKGKLSKK 479 + Q + + + ++ + I + W K P++ +Q+ Sbjct: 750 QINLIQKVYELIGEVRTEGIDNLRSLKKKWGSARPDEGTKENPAKEQLQALEQDNSSLAV 809 Query: 480 PSLREAALLLTLIN-------------HPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + +L + +Q + + L+ E L + Sbjct: 810 LACKARSLGRWRLAAQQARFQGQLSRAEKEAMQRKKECLSIKLMAEQEAVLFRQQLLALR 869 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG--------LWSATTEANIVDVRQGY 578 + + R + +LL++L +V + +++ E + DV Q Sbjct: 870 QALARAQADNVRMRKQQDNQAQLLRELQHRVAQEAHHRQQMDLMKTSSMEKLLEDVEQKK 929 Query: 579 QQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAIL--ISILHEVHIQIHQIE 632 Q L + S+ Q++ I++++ Q ++ E++ L L E+ Q++ E Sbjct: 930 QHLQLLTEAAERASKLGQLQQKRIQRELRQTRSRLAQERSVKLDAFQRLEELQSQLNDAE 989 Query: 633 S 633 Sbjct: 990 R 990 >gi|56419334|ref|YP_146652.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus kaustophilus HTA426] gi|56379176|dbj|BAD75084.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus kaustophilus HTA426] Length = 862 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 72/208 (34%), Gaps = 16/208 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ + + AL+ + Sbjct: 320 YRQYIEKDPALERRFQQVLVQEPTVEDTISILRGLKERYEVHHGVKIHDRALVAAAVLSD 379 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF--------G 547 + +++ I + + + + S E + + + E Sbjct: 380 RYISDRFLPDKAIDLVDEACATIRTEMESMPSELDEVMRRVMQLEIEEAALSKETDEASR 439 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L L +++ D + +A ++ + L + R+ EE E + Sbjct: 440 ERLAALQKELADLREKANAMKAQWQKEKEALDRVRRLREALERAKRELEEAENE------ 493 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQ 634 + K A L + ++ Q+ Q+E + Sbjct: 494 -YDLNKAAELRHGRIPQLEKQLKQLEQE 520 >gi|325288230|ref|YP_004264411.1| hypothetical protein Sgly_0035 [Syntrophobotulus glycolicus DSM 8271] gi|324963631|gb|ADY54410.1| hypothetical protein Sgly_0035 [Syntrophobotulus glycolicus DSM 8271] Length = 472 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 59/436 (13%), Positives = 118/436 (27%), Gaps = 73/436 (16%) Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLI 121 +Y S G + F+ G +F E+V L + G V P +KK++ + Sbjct: 53 WYDHSAESGGYAIDFVRQFYGLTFPEAVTML--LGGEQGEVYRPASQKKQEAKQPF---- 106 Query: 122 EVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEE 181 +L N Y E+ Sbjct: 107 ---------ALPNPHSDMRRVYAYLVKTRLIDREVVSYFAK------------------- 138 Query: 182 KIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPET-I 240 A LL + + + + +F G R L + N Sbjct: 139 ----AKLLYESCEKSKDSMKEYHNAVFVGYDENGVPRHAHKRGLYTEGTGFKGNVDSCDP 194 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLS---LCQAGVQ---NV 294 + +S+ + + E +D+LS L + V Sbjct: 195 AYSFHHI---------------------GTSNHLYVFEAPIDLLSYITLHPNDWRNHSYV 233 Query: 295 VSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 + ++ L +VLC D D+ G+ A+ + LI LS Sbjct: 234 ALCGVSEYAMLKMLELHPNLNHVVLCLDHDEAGIEAS----EKYHDLLIEKCVSCDRDLS 289 Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 +D + I+ L+ RE S + L + Sbjct: 290 IHKDWNEDIKANHGLPAIPAEEHPQHLIRDEICRELTETSMTVKSNCSA--NTLSALLVK 347 Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + +S + + L+++ + + + R + + ++ +G Sbjct: 348 ARSHLHWGQFSG-VDECLREMCRLSMAAAAREYRQMDHSRNLSTVQSRLHSGFRTYENRG 406 Query: 475 KLSKKPSLREAALLLT 490 L + L E+ ++ Sbjct: 407 HLKTRLDLLESDIMAL 422 >gi|315634390|ref|ZP_07889677.1| replicative DNA helicase DnaB [Aggregatibacter segnis ATCC 33393] gi|315476980|gb|EFU67725.1| replicative DNA helicase DnaB [Aggregatibacter segnis ATCC 33393] Length = 468 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 22/162 (13%), Positives = 55/162 (33%), Gaps = 10/162 (6%) Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 S + + + + E A+L +++ + + + + + E + + Sbjct: 2 ASKNSPPVKEQNTTNLNIPPHSIEAEQAVLGSILLNNMYWDDVAENVVKEDFYRFEHRLI 61 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + + +Q + Q L E+++Q+ A L + T A Sbjct: 62 FEEMEKLIAQQSPVDLITLEQALKS---REVIEQVGGFAYLAELSNNTPSAAN------- 111 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 A A R + + R+ + +IAQ + + + L+ Sbjct: 112 VVAYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKHLLDE 153 >gi|301062731|ref|ZP_07203345.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300443166|gb|EFK07317.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 312 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 172 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 221 >gi|195035221|ref|XP_001989076.1| GH11520 [Drosophila grimshawi] gi|193905076|gb|EDW03943.1| GH11520 [Drosophila grimshawi] Length = 1721 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 90/290 (31%), Gaps = 20/290 (6%) Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 D L + L+ + E A + + Sbjct: 898 DDAVVFVTMSDDENASLELRYQALLSDMSWNERAEALATLQAYVARHPGRAQELHQKLSS 957 Query: 418 QKLRYYYSQAI----RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 R + + + + ++ + + + + R D K ++L++ K Sbjct: 958 PSRRRSLQETLKKYQAKQGRAHQKRILLQQEKAAKLQQLFIRVEDVKAVKKQLIEDKRQK 1017 Query: 474 --GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQK 530 G+L + RE L + ++ ++L +I + N E Q L Sbjct: 1018 MEGRLQRAAENREIYLRQII----EKAHDEDKKLKEINFIKNIEAQNKRLDLMESVK--- 1070 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E Q L + + ++ ++ A + ++ + + + L +R Sbjct: 1071 --DAEGRLQELEQERQKRVEEKAAKEAAVERRRQALEKERLLKLEKMNETRLEKEQRIGK 1128 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILH----EVHIQIHQIESQEA 636 + QKE + +A+ A+ E+ L E+ +I Q + + A Sbjct: 1129 MQEQKERQRQALAREKARDREERLLALQVQKQQTTEELQRKILQKQLESA 1178 >gi|332860509|ref|XP_003317459.1| PREDICTED: dystrophin-like isoform 4 [Pan troglodytes] Length = 1243 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLRQWQINVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWGSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDAYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|304312029|ref|YP_003811627.1| Replicative DNA helicase [gamma proteobacterium HdN1] gi|301797762|emb|CBL45984.1| Replicative DNA helicase [gamma proteobacterium HdN1] Length = 464 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 10/146 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ E A++ L+ + + +A++ + E + ++ + E F Sbjct: 20 KVPPHSLEAEQAVIGGLMLDNQAFDDVSELVAEVDFYRREHRLIFRAIAQLSQENHPFDV 79 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + + DAG E +A A R R + RQ Sbjct: 80 ITLGEALVKSA----------ALEDAGGMKYLAEVARNTPSASNIRAYAAIVRERSVLRQ 129 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISI 620 + +IA+ + + L+ Sbjct: 130 MVRVANEIAESAFNPKGRSASELLDE 155 >gi|296132448|ref|YP_003639695.1| ATP-dependent chaperone ClpB [Thermincola sp. JR] gi|296031026|gb|ADG81794.1| ATP-dependent chaperone ClpB [Thermincola potens JR] Length = 868 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 18/209 (8%), Positives = 72/209 (34%), Gaps = 14/209 (6%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K++ + + R ++ + + +++ + ++ ++++A++ + Sbjct: 320 YRKHVEKDAALERRFQPVLVNPPSVEDTISILRGLKERYEVHHGVRIKDSAIVAAAVLSD 379 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + ++ + + S E + + E + + + Sbjct: 380 RYISDRFLPDKAIDLMDEAAARIRTEIDSLPTELDEITRRIMQMEIEEAALSKEKDEASQ 439 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + + + D + + + + EI+K+I + + E + Sbjct: 440 ERLEKLRSQLAELRSEADAMKAQWEV------EKQAISRLREIKKEIEETRQEIERAERE 493 Query: 616 ILISILHEVH--------IQIHQIESQEA 636 ++ L E+ Q+ + E A Sbjct: 494 YDLNRLAELRYGKLANLERQLKEEEETLA 522 >gi|58268486|ref|XP_571399.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|57227634|gb|AAW44092.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 1572 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 36/274 (13%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + E L +D+ R Q I R + ++ Sbjct: 581 IHKHLNEMNKQLLETNAELAREAEAWRDEVER---LQDILHRAGIDADEDASQTGARSNR 637 Query: 450 WKKNARHRDQKGPSQRLMQSSL-------------VKGKLSKKPSLREAALLLTLI--NH 494 + R P +R + ++ S PS LL L Sbjct: 638 SVSQSHSRQLPAPPRRSPSRTPGSRDHSEIISQLSMRSGQSASPSKNAQDLLDGLSPEER 697 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRLCERGFGELLK 551 A++QE + L + + N +++ + L + + + +H ++ E L+ Sbjct: 698 AAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEE--LARQLE 755 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------- 604 + ++ L S ++ + + + + L + ++ + Sbjct: 756 ETEQ--ARVDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTR 813 Query: 605 ----VTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +G +E+ L + E+ +++ I+ Q Sbjct: 814 LEGLAEKEGSSEREEELRKQVREMEVELEAIKGQ 847 Score = 42.6 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 26/277 (9%), Positives = 87/277 (31%), Gaps = 15/277 (5%) Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--SQAIRDRL 432 + + +M + E+ NT +E + + ++ + + + +L Sbjct: 695 EERAAVIQEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQL 754 Query: 433 QQLFQKYITEHSGYGRYWKKNARHR----DQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++ Q + S + + + +A + ++ L + E L Sbjct: 755 EETEQARVDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASAREEADRLRAERTRL 814 Query: 489 LTLI-------NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 L + ++ + ++ + + + + + E+ Sbjct: 815 EGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATK 874 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 +++ + +D+ + E ++ + ++A Q E+ +Q Sbjct: 875 KFEDAERRVEEHQKLHQDSEHRAERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQ 934 Query: 602 IAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEA 636 + Q+ + E ++ I L+ + Q+ + + A Sbjct: 935 LDQLHEEKEKQLDQQQNEIQELNRLVQQLEAAQEKAA 971 Score = 39.5 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 27/269 (10%), Positives = 76/269 (28%), Gaps = 21/269 (7%) Query: 370 AFEKLIVESLPLVDML-----WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 E + ++ + + + + + E ++ +D + R Sbjct: 840 ELEAIKGQAKDMHEETEELRGKIQLLNKEKEEATKKFEDAERRVEEHQKLHQDSEHR--- 896 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +R + + E Q + + + E Sbjct: 897 ----AERAENDLETLSAELKEASNAQLAADEKLAQYEKELEQLDQLHEEKEKQLDQQQNE 952 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--FVEQKYFLPEEIHQRLC 542 L L+ QE+ A+ + EL+++ L +E K ++ +L Sbjct: 953 IQELNRLVQQLEAAQEKA---AENEWVKEELERVQKELEDVHKLLEDKEIQLGDLRGKLE 1009 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + L R+ ++ + + + +AL R R+ ++++I Sbjct: 1010 VAEASKDLTSSQRRSPSGTSSTSDRGEDGHVAQNSFV--IALEDRLDEAYREIGRLKREI 1067 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQI 631 + A + + + + + + Sbjct: 1068 NTTPHRKSAIEVRD--ARIQALEREKAAL 1094 Score = 38.3 bits (87), Expect = 4.0, Method: Composition-based stats. Identities = 34/299 (11%), Positives = 86/299 (28%), Gaps = 34/299 (11%) Query: 323 GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAF---EKLIVESL 379 + + + +I + + + PD + ++ Sbjct: 702 QEMAERLESLEEEMNTREEVIAELQDKLEYAHQSQSPDVQSLHAQIEELARQLEETEQAR 761 Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKY 439 + + ++TE+ + + + E +K+ + + DRL+ + Sbjct: 762 VDLQSEFSKKTEDHAAKFTEICSGFESQVKSLEKDLASA-------REEADRLRAERTRL 814 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 G ++ + + L + ++ + L Sbjct: 815 EGLAEKEGSSEREEELRKQVREMEVELEAIKGQAKDMHEETEEL-RGKIQLLNKEKEEAT 873 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL---------- 549 +++++ E QKL E+ E + L E +L Sbjct: 874 KKFEDAER---RVEEHQKLHQD-SEHRAERAENDLETLSAELKEASNAQLAADEKLAQYE 929 Query: 550 --LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIE 599 L+QLD+ + + I ++ + QQ A ++ L R ++E+E Sbjct: 930 KELEQLDQLHEEKEKQLDQQQNEIQELNRLVQQLEAAQEKAAENEWVKEELERVQKELE 988 >gi|327294169|ref|XP_003231780.1| hypothetical protein TERG_07399 [Trichophyton rubrum CBS 118892] gi|326465725|gb|EGD91178.1| hypothetical protein TERG_07399 [Trichophyton rubrum CBS 118892] Length = 1097 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L++L L E + + E+ + +LL++L+ Q D + D+ Sbjct: 235 LKQLAERLKVLQQENESLDKQLCQ---EEKEYEQLLRELEDQRNDLKQRVKEKDDATGDL 291 Query: 575 RQGYQQALALY--------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 R+ + ++ KR +LL + +E E++ + E+ + + L + Sbjct: 292 RKHINKLESINRTVQNEKSKREKLLQQ--KEAERKKRREDIVRWDERESEIKDELDNLQK 349 Query: 627 QIHQIESQ 634 + +I+ + Sbjct: 350 EKARIDEE 357 Score = 44.1 bits (102), Expect = 0.066, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 65/224 (29%), Gaps = 14/224 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + L Y + E SG K++ R G + Sbjct: 163 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGAAQAKRSGGGRRSIGSTFVQDSGGPQMLD 222 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN-ELQKLWSFLFSDFVEQKYFLP 534 + L L +LQ++ + L E ++L L Sbjct: 223 DGEAAGGEYEGSLKQLAERLKVLQQENESLDKQLCQEEKEYEQLLRELEDQ--------R 274 Query: 535 EEIHQRLCERG-----FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 ++ QR+ E+ + + +L+ R + E + ++ R+ Sbjct: 275 NDLKQRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQKEAERKKRREDIVRWD 334 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++ + + A+ + E T L ++ + +++ Sbjct: 335 ERESEIKDELDNLQKEKARIDEESTTKLEEYRRKITEEQGEMKQ 378 >gi|301059512|ref|ZP_07200425.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300446407|gb|EFK10259.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 670 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 610 >gi|301061242|ref|ZP_07202024.1| integrase core domain protein [delta proteobacterium NaphS2] gi|300444561|gb|EFK08544.1| integrase core domain protein [delta proteobacterium NaphS2] Length = 659 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 31 KTNAVKGDYWACCPF-HDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL 80 K + + W PF H+EK S H + S+ + FS G + F + Sbjct: 561 KRSRRDDEIWIKSPFTHEEK-ASMHVSLSENIFKDFSSGKGGGIMQFCREM 610 >gi|257460386|ref|ZP_05625487.1| replicative DNA helicase [Campylobacter gracilis RM3268] gi|257441717|gb|EEV16859.1| replicative DNA helicase [Campylobacter gracilis RM3268] Length = 692 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 16/159 (10%), Positives = 49/159 (30%), Gaps = 7/159 (4%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L +L+ + E + ++ + ++ + + P + + L E Sbjct: 17 ERAILSSLLQNEDAYGELSEIISVGDFFYKPHADIYEAIVKCSSHNEPIAPSFVKKWLAE 76 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA-------LALYKRFRLLSRQKE 596 R ++ E +++ + + R + + + Sbjct: 77 RYDDGAFTEVVATSGVVDAPKYALELREKSIKRSLIKVAHEIPSMVNEAVRSKDTADKIS 136 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 ++ G +K+ +I+ + E + + E Sbjct: 137 SKIYELIDEERHGGIKKSHEIIADVVEELKRQKALAGSE 175 >gi|158287493|ref|XP_564385.3| AGAP011138-PA [Anopheles gambiae str. PEST] gi|157019677|gb|EAL41598.3| AGAP011138-PA [Anopheles gambiae str. PEST] Length = 1909 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 40/318 (12%), Positives = 97/318 (30%), Gaps = 20/318 (6%) Query: 336 DLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSF 395 ++ E + + + + SL ++E + R Sbjct: 1493 EIAQLKRQKNELDRRCKEQDEELDEMAGQIQLLEQAKLRLEMSLETSRKEARKEAQQRDD 1552 Query: 396 NTPDERAELEIHLKNCINHIKDQKL-RYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWK 451 + R +K+ ++ + R + + +L L + E + + Sbjct: 1553 EMEEIRGASYKKIKSLECQLEQEHEERTQLLRDKHELERKLASLEDQDRAERAAEEAMVQ 1612 Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 + R + R QS L + K L L + + + + + Sbjct: 1613 RLKRDARKYRALLRDAQSQLDRAKGDSASKALVRQLRNQLEDAESARVAALKARQVLEGE 1672 Query: 512 NNELQKLWSFLFSDFVEQKYF------LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + Q L+ E + E+ ++ E E + +L ++ A + Sbjct: 1673 LQDAQLLFEETQRARNEAEDRATVAQRDRAELQAQIDEN--EEEMAELMKKYS-ATVKQL 1729 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISIL---- 621 ++E ++ + + + L + L Q E+ ++ V GE + L Sbjct: 1730 SSEQSL--IAEYELRVSELEGEKKSLKEQVVELATRLESVETIGEPSNSMA-FKRLELRT 1786 Query: 622 HEVHIQIHQIESQEAMIE 639 E+ ++ ++ A IE Sbjct: 1787 KELESRLEFEQATRARIE 1804 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 88/289 (30%), Gaps = 16/289 (5%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 + ++ + + KR+ D +++L+ + + ++LR Sbjct: 1591 RKLASLEDQDRAERAAEEAMVQRLKRDARKYRALLRDAQSQLDRAKGDSASKALVRQLRN 1650 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 A R+ L + + E R + R + + +L + Sbjct: 1651 QLEDAESARVAALKARQVLEGELQDAQLLFEETQRARNEAEDRATVAQRDRAELQAQIDE 1710 Query: 483 REAALLLTLINHPAILQEQYQE---LADIRYDNNEL----QKLWSFLFSDFVE------- 528 E + + + A +++ E +A+ +EL + L + Sbjct: 1711 NEEEMAELMKKYSATVKQLSSEQSLIAEYELRVSELEGEKKSLKEQVVELATRLESVETI 1770 Query: 529 -QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + L + L+ + A + ++ ++ QA + Sbjct: 1771 GEPSNSMAFKRLELRTKELESRLEFEQATRARIEIQLARHKDSLEKLQGELSQARNREAQ 1830 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + ++ ++ +++ + A + + E+ +I ES+ A Sbjct: 1831 AQDALKKGQKTVREL-RDELSTLANRDQEGLLKRKELEKRIETAESETA 1878 >gi|320170630|gb|EFW47529.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 989 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 65/198 (32%), Gaps = 14/198 (7%) Query: 453 NARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDN 512 N + S +L + S RE L+ I H +L+ L + Sbjct: 316 NTTVYTSANTTVSDPSSQPETTRLLRVISERERKLVSLSIEHTQLLEAH-DLLKSEH--D 372 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEAN 570 ++L S + + EE+ + E+ ELL + ++ + + + + Sbjct: 373 QVRKELASAMTAAPSSGGSRKEEELLAAIREKEVQISELLAEGEKLSKRELVLNTNIKKL 432 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG-EAEKTAILISIL-------- 621 + + A + L + Q+ ++ K + + + ++ L Sbjct: 433 NAKCKAAETETTAAKGQVAELESVLTTLRTQVVELQRKEIDYQDSLAKVNTLSDAQGKEA 492 Query: 622 HEVHIQIHQIESQEAMIE 639 H + + + + A I+ Sbjct: 493 HALRKDLEKAREENAGIK 510 >gi|288926421|ref|ZP_06420342.1| mobilizable transposon, excision protein [Prevotella buccae D17] gi|288336794|gb|EFC75159.1| mobilizable transposon, excision protein [Prevotella buccae D17] Length = 311 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 14/40 (35%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG 82 PF +E SF N +Y F G ++ L Sbjct: 34 SPFRNETQASFKVNTKLNLWYDFGLGKGGSIIALAEELYH 73 >gi|258648359|ref|ZP_05735828.1| replicative DNA helicase [Prevotella tannerae ATCC 51259] gi|260851526|gb|EEX71395.1| replicative DNA helicase [Prevotella tannerae ATCC 51259] Length = 517 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 16/206 (7%) Query: 452 KNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 + + + G L + E A+L +L+ + L + Sbjct: 2 PEQSTKRKPRKVAKQAPLEDDFGHLQPQDIKMEQAILGSLMIEKEAYDRVSEILKPAVFY 61 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-------------FGELLKQLDRQVR 558 NN Q ++ + E+K + ++L +G ++ Sbjct: 62 NNSHQLIFEAIRDLEAEEKPVDFLTVTEKLDRKGQLEDIGGAFYITQLSSMVSSTAHLEY 121 Query: 559 DAGLWS--ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 A + + AT I Q+A L ++ E Q++Q K + + Sbjct: 122 YAHIIAQKATARELIAYASDIQQKAFDATTDVDELMQEAEGALFQLSQENLKKDYTQINP 181 Query: 617 LISILHE-VHIQIHQIESQEAMIEGF 641 ++ +E + + + + GF Sbjct: 182 VVDEAYEMLKKAAARSDGLSGLSSGF 207 >gi|308234043|ref|ZP_07664780.1| replicative DNA helicase [Atopobium vaginae DSM 15829] gi|328943440|ref|ZP_08240905.1| replicative DNA helicase DnaB [Atopobium vaginae DSM 15829] gi|327491409|gb|EGF23183.1| replicative DNA helicase DnaB [Atopobium vaginae DSM 15829] Length = 471 Score = 46.4 bits (108), Expect = 0.014, Method: Composition-based stats. Identities = 20/191 (10%), Positives = 59/191 (30%), Gaps = 12/191 (6%) Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 ++ Q + + + + S E ++L ++ +LQE L + Sbjct: 8 QNYAQNEQQSQNLGALDPTQVRMPQDSDAEKSILSAMLLSDDVLQECLMRLRVDDFYLQS 67 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL----KQLDRQVRDAGLWSATTEAN 570 + +++ + + + P + L + + + L+ L S Sbjct: 68 HKMIFNAICALAEQGHQADPISVADYLKTQNQLDKIGGSSTLLELNENTFSLTSWEHHIE 127 Query: 571 IVDVRQGYQQALALYKRFRLL--------SRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 I+ + + + L + E + VT K + L ++ Sbjct: 128 ILRKNATLRAIIHASANIQKLAFSAPEDTKEVVDSAENMLLDVTNKEVTSNFSQLSDLMA 187 Query: 623 EVHIQIHQIES 633 +++ + ++ Sbjct: 188 DLYNDLSDMQE 198 >gi|332860511|ref|XP_003317460.1| PREDICTED: dystrophin-like isoform 5 [Pan troglodytes] Length = 1225 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLRQWQINVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWGSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDAYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|325264634|ref|ZP_08131364.1| replicative DNA helicase [Clostridium sp. D5] gi|324030296|gb|EGB91581.1| replicative DNA helicase [Clostridium sp. D5] Length = 449 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/125 (10%), Positives = 40/125 (32%), Gaps = 3/125 (2%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ + E A++ ++ + + + + + L+ + F K Sbjct: 8 KRILPHSAEAEQAVVGAMLMNKDAIMSASEIITGEDFYQTAYGILFDSMVELFQAGKPVD 67 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + L E+ + L+ L ++ + V Q + +R ++ Sbjct: 68 LITLQEHLKEKDVPPEISSLE---FARDLIASVQTSANVKFYAEIVQEKSTLRRLIKVNE 124 Query: 594 QKEEI 598 + I Sbjct: 125 EVANI 129 >gi|315607611|ref|ZP_07882606.1| toprim domain protein [Prevotella buccae ATCC 33574] gi|315250794|gb|EFU30788.1| toprim domain protein [Prevotella buccae ATCC 33574] Length = 341 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 47/355 (13%), Positives = 98/355 (27%), Gaps = 69/355 (19%) Query: 44 PFHDEKTPSFHCNDSKGFY-------YCFS----CHVKGDHLSFLSALLGC----SFIES 88 PF ++ PS H ++G Y F C G+ + + L +F E Sbjct: 34 PFREDSRPSCHLYANRGGYGNGQYYLQDFGDSSFC---GNCFTIVGRLCNINPKTNFREV 90 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +Q + G+ + E++ + H+ L + Y Sbjct: 91 LQVIDRDLGLGI-----FDEQRSE----------------HNVLMKRKATPSQKYKCSSI 129 Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 + + + + L K I + Sbjct: 130 ASFEVVTQPFMPWEEEYWGQYGIGLSTLERYNVKSISS---------------------C 168 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG---KNLYNFFGALNYLQKSIRKD 265 + S G A G + + ++ + +Y Y+ ++ Sbjct: 169 TFKKSSGGNFAVYGSKAIPTYGYFFDDGRRLKIYRPKAKTRFMYAGHFPKPYI---FGRE 225 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGD 324 + + + G DV+SL G + + + E + L + RI+ +D D Sbjct: 226 QLPEEGALVFVTGGEKDVMSLSAHGFPALTFNSETANIPEDVMDKLSQRFRRIIFLYDTD 285 Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDSFIR-CYGKTAFEKLIVE 377 + G R + I + +D F R + + +I + Sbjct: 286 ETGQRESALRIQQYGEKYNVQKLDLPLSGEKSEKDISDFFRLGHTAEELQAMIEK 340 >gi|49257800|gb|AAH74587.1| dctn1 protein [Xenopus (Silurana) tropicalis] Length = 797 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 36/361 (9%) Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFD---GDDPGLRAAYKAIDLVLCHLIPGNRVNF 350 V+ L + L + + +A K ++ L Sbjct: 168 PVAPLPGPGPTKEEENLRAQVKDLDEKLETLKMKRAEDKAKLKELEKSKLQLEQLQEWKS 227 Query: 351 VLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKN 410 + + D ++ K A E L + + +M + + + E L+ Sbjct: 228 KMQEQQADVQRQLKEAKKEAKEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQ 287 Query: 411 CINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 ++ +KD+ + L+ + + E G ++ Q ++ + Sbjct: 288 EVDTLKDKV----------EELKIDLEIFKHEIEEKGSDGAASSYQVKQLEEQNARLKEA 337 Query: 471 LVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD 525 LV+ + +E + + L++Q ++L + + +L + + Sbjct: 338 LVRMRDLSASEKQEHVKVQKQMEKKNTELDTLRQQKEKLQEEASLMEKTIDELKEQVDAA 397 Query: 526 FVEQKYFLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 EE+ + L ER E +++L V D + + + R+ L Sbjct: 398 LGA------EEMVETLTERNLDLEEKVRELRETVSDLEAINEMNDELQENARET---ELE 448 Query: 584 LYKRFRLLSRQKEEIEKQIAQV-TAKGEAE----KTAILISILHEVHIQIHQIESQEAMI 638 L ++ + + E EK++ + + K L + L EV+ ++ QEA + Sbjct: 449 LREQLDMAGARVREAEKRVEAAQETVADYQQTIKKYRDLTAHLQEVNRELR--NQQEASV 506 Query: 639 E 639 E Sbjct: 507 E 507 >gi|313227586|emb|CBY22733.1| unnamed protein product [Oikopleura dioica] Length = 6995 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 87/273 (31%), Gaps = 29/273 (10%) Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 E ++ + +E A + +N D+ ++ + + L + Sbjct: 6308 NEELKDNMLKSAEEEARRQALEENLDPSDADKLIQEHLRK--AQDLYDSEALKKQQERDA 6365 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY---- 502 R K+ + + +++ RE A + PA + Sbjct: 6366 LRQRMKDLAALKAAKRAAEAAAKRKREEDIAR--ENREFAKIADEATDPAEIYRIMAKRH 6423 Query: 503 ----QELADIRYDNNELQKL--WSFLFSDF--VEQKYFLPEEIHQRLCERGFGELLKQLD 554 ++L + + + E+ KL + + + + Q PEE+ + + LL + Sbjct: 6424 AREMEDLERVFFSDQEMAKLEKQNKIREERMKLRQNITDPEELARF--DAETKRLLSEAA 6481 Query: 555 RQVRDAGLWSATTE--------ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 + + L + + D + A+ +++K EIEK + Sbjct: 6482 KITPEDQLELIRRKNKLKERQMKEVQDALEKLSPEYAMKLDAEREAQKKAEIEKASRE-- 6539 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + E ++ Q+E+++ + Sbjct: 6540 -EAAKAMALEIERQKKEKLRRLEQLEAEQRRKD 6571 >gi|7670454|dbj|BAA95078.1| unnamed protein product [Mus musculus] Length = 762 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 31/283 (10%), Positives = 93/283 (32%), Gaps = 17/283 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 186 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 245 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 246 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 305 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF---LPEEIHQRLCERGFGELLKQ 552 + + + + + ++ ++ E + ++L L Sbjct: 306 ELFDLKTKYDEENYLQRPDEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLAS 365 Query: 553 LDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQ 601 ++ + A E I + + Q+ A + R S Q ++E+Q Sbjct: 366 QIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQ 425 Query: 602 IAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 + + + E+ + EV +++ ++S E A EG G Sbjct: 426 LNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 468 >gi|218248836|ref|YP_002374207.1| replicative DNA helicase [Cyanothece sp. PCC 8801] gi|218169314|gb|ACK68051.1| replicative DNA helicase [Cyanothece sp. PCC 8801] Length = 444 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 52/174 (29%), Gaps = 12/174 (6%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L + E ++L ++ + + + + ++ + + K Sbjct: 7 LPPQNIEAEESILGGILLDREAMGRVADLITPDAFYVQAHKDIYEAALKLYAQGKPTDFL 66 Query: 536 EIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L + +LL V + + + + Sbjct: 67 TVKSILEDHQLLEKVGGTDKLNQLLDSTVAAVNIDRYAALVMDKYLRRQLISAGHEITEL 126 Query: 586 --KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + + L + +E EK+I +T K E + L + + ++ + + A+ Sbjct: 127 GFETTKELEQVLDESEKKIFSLTQKRPQEGLIPIADTLVQTYSELEKRHQKTAL 180 >gi|163840102|ref|YP_001624507.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC 33209] gi|229470354|sp|A9WPT6|RF2_RENSM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|162953578|gb|ABY23093.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC 33209] Length = 374 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 ADI + EL+ L + + ++ + + + + L Q LW Sbjct: 2 ADIDFP-AELRALRALRATYDSIERVIDADSLRKDI---------AVLSEQAGVPDLWDN 51 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 EA V A + +R L+ + +++E + ++ + + A L + Sbjct: 52 PAEA--QKVTSKLSHAQSKLERLETLTARIDDLEVLVELAESEHDEDSLAEASKELVSLQ 109 Query: 626 IQIHQIE 632 + ++E Sbjct: 110 KSLQELE 116 >gi|269941585|emb|CBI49990.1| phage protein [Staphylococcus aureus subsp. aureus TW20] Length = 370 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 40/347 (11%), Positives = 85/347 (24%), Gaps = 49/347 (14%) Query: 53 FHCNDSKGFYYCF-SCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPK 106 + ++C+ C D + + L SFI+ + L I + + Sbjct: 51 LYYYPETQLFHCYTGCG-SFDVFTLIEKRLKMEGKAHSFIDCITTLGKILEINI----NL 105 Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 K + IQ + ++ + D+ + K + + +ER + K Sbjct: 106 TSKVKGIQKSVKKIHDW--DWLNKIQKKEKVQPQLKIHNERILTYFDEIYPKA------- 156 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 L Y + P G +I R Sbjct: 157 --------------WYQAGISLETMEKYQIKFYPEMFQTV-IPHHDHEGNLIGIRSRNWD 201 Query: 227 KGESVKYLNSPETI-----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 K K P I G LY + + + + + S + Sbjct: 202 KEFVKKAKYIPTYINDTGYNHPLGYALYGLYQNKEAIIQRKKAMIVEGEKSCLF------ 255 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 + V LL +++ D + + + Sbjct: 256 -SDTFYGEDNFVVAICGSNMSKYQAELLLNLGIEEVIIAIDKEYMQVDTPEFDEYMKKVK 314 Query: 342 LIPGNRVNFVLLSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLW 386 I ++ D +S + A + + E + + + Sbjct: 315 KIGKLFAPYIQTYHLTDTNSVLNYKDSPLDATKSELEEMMKVDKHIL 361 >gi|194766886|ref|XP_001965555.1| GF22554 [Drosophila ananassae] gi|190619546|gb|EDV35070.1| GF22554 [Drosophila ananassae] Length = 2609 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 48/367 (13%), Positives = 122/367 (33%), Gaps = 25/367 (6%) Query: 281 MDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLC 340 D L S L + + + + + ++ L Sbjct: 1037 TDYAKLQLLHSDMEHSLTQAELKVESMTTHLTNTRDKIAKLEEGNGLKALRITELEKQLK 1096 Query: 341 HLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDE 400 L+ ++ + ED K ++ + E + ++ K + ++ + Sbjct: 1097 DLVIEVKIREAKAVKMEDLYVMKMKSVKDDLQEQVREKVTALEEHHKMKMKSAELEKEVQ 1156 Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 ELE+ L + +++ Q + ++ ++L + E + K + + Sbjct: 1157 IKELEVQLSEQQEKLSEKQ------QKLSEQQEKLSE---QEEKLSEKVQKLSEQETKLS 1207 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLW 519 Q+L + + KK S +E L+ H ++ + + I E K Sbjct: 1208 EQEQKLSEQEQKLSQQEKKISEQEEQLIRKEEKHLEEIKNMKADCSGSIHQLEKEHWKQV 1267 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE--ANIVDVRQG 577 L + E + +++ + +L ++ R L +A E A D+ Sbjct: 1268 QGLQEELAETNREMCKQLSDH--AQEMRQLQQKAVDIHRLEELKTANAEMVAERKDMEVQ 1325 Query: 578 YQQALALYKRFRLL-SRQKEEIEKQIAQVTAKGEA-----EKTAILISI-----LHEVHI 626 +Q KR + L ++ ++++ ++ + + +A E++ L E+ Sbjct: 1326 LKQLEEEMKREKQLAQQEIDQLKARLRESEEQMDALVLDLEQSKRLAKEESERLAQEIQK 1385 Query: 627 QIHQIES 633 Q +++ Sbjct: 1386 QAAELKE 1392 >gi|170676323|ref|YP_001742084.1| putative DNA primase [Salmonella phage E1] gi|170321633|emb|CAM33152.1| putative DNA primase [Salmonella phage Vi II-E1] Length = 317 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 18/164 (10%) Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEV 123 C C G +++L L G SF E+++ L + K E I+ +L ++ Sbjct: 63 CNQCG-SGSGINWLMKLSGMSFPEALEALGGFLNMHPRE------KLEAIRKELPKIN-- 113 Query: 124 ATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPD----SRYSLREHLRQKGFS 179 ++ ++ R + + +G + L + + Sbjct: 114 ----YNDDFITEQEVAAIMAKTTRVAMNEWTLINGIGCDINVAIGKYGELIAVEMMRADT 169 Query: 180 EEKIIEAGLLIDGDNSATSYDRFRNRLIFPI-RSSRGQVIAFGG 222 + A + IDGD+ T + N+ + +RG + GG Sbjct: 170 MKLCNVAFIGIDGDSFRTYFRAGYNKDSTINGKLTRGAISPIGG 213 >gi|145591215|ref|YP_001153217.1| SMC domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282983|gb|ABP50565.1| SMC domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 702 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 13/151 (8%) Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 L ++ L L + + + +++ L + EE+ +R+ Sbjct: 141 LRRILQEAEYLDRIL-RLDEFDKVDELYRDVYNELRARRERIGGR-AEELEKRIQ--PLR 196 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-------FRLLSRQKEEIEK 600 L+ L R++ + E + + ++ L L R L R+ EE+ Sbjct: 197 SRLEDLRRRLGEVEAKLRELEPYQNRLPEAERRYLELRDRHNVLLAEREQLERRLEEL-- 254 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 A + A+ + E+ + + + ++ + Sbjct: 255 AHAALEAEKDVEQLEEELEKIRKAAQELKTL 285 Score = 39.1 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 7/151 (4%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++++E E+ + + Q +L D + K L E + L Sbjct: 390 SLIEELRDEIKRLESLDRAYQTYREYLNVDLLSAKKRLTELEKMYKAKVETERRRAYLAA 449 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-----GE 610 V E + + + +R + + + E+ + + + A+ Sbjct: 450 LVEREAEVLGKLEKAKRRLAEAEVAIGEVGERLKKVEEELEKTQALLKEAEAEYLLIRDR 509 Query: 611 AEKTAILISILHEVHIQIH--QIESQEAMIE 639 + L ++ E+ Q+ ++E QEA+ E Sbjct: 510 HREYTALQTLAKELREQLQSTELELQEAVAE 540 >gi|30248218|ref|NP_840288.1| dnaB; replicative DNA helicase protein [Nitrosomonas europaea ATCC 19718] gi|30180103|emb|CAD84105.1| dnaB; replicative DNA helicase protein [Nitrosomonas europaea ATCC 19718] Length = 465 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 10/130 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E ++L L+ + + + + + Q ++ + + K Sbjct: 19 KLPPHSIEAEQSVLGGLMLDNQAWDKVADIIIESDFYRQDHQLIYQHISRLIEQNKPADV 78 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L QL A + + + Y + + R R + R+ Sbjct: 79 ITVAESLENA------AQLQHAGGLAYIGAIAQNTPSAANIRRYAEIV----RERSIMRK 128 Query: 595 KEEIEKQIAQ 604 ++ QI Sbjct: 129 LAQVSTQITD 138 >gi|317484560|ref|ZP_07943467.1| ATP-dependent chaperone ClpB [Bilophila wadsworthia 3_1_6] gi|316924186|gb|EFV45365.1| ATP-dependent chaperone ClpB [Bilophila wadsworthia 3_1_6] Length = 872 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 81/211 (38%), Gaps = 17/211 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + R ++ + +++ + ++ + +++++ ++ Sbjct: 324 YRKYIEKDPALERRFQTVLVEEPSVEDTISILRGLKERFEVHHGVRISDSSIVEAVVLSN 383 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-------- 547 + ++ I + + + + S E + + + Sbjct: 384 RYITDRQLPDKAIDLIDEAAAMIRTEIDSLPTELDEANRKVMQLEIEREALRKETDDASR 443 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 E L++L+ ++R+ + A +++ ++ + R L + E+ I T Sbjct: 444 ERLEKLENELRNLQMTQA-------ELKGQWENEKGVINVVRDLKGEIEQTRLAIDDATR 496 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIES-QEA 636 +G+ + + L + L E+ ++H+ E+ QEA Sbjct: 497 RGDLQAASELKYAKLPELEKRLHEAENGQEA 527 >gi|293375557|ref|ZP_06621831.1| replicative DNA helicase [Turicibacter sanguinis PC909] gi|292645774|gb|EFF63810.1| replicative DNA helicase [Turicibacter sanguinis PC909] Length = 453 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 13/161 (8%), Positives = 59/161 (36%), Gaps = 15/161 (9%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + + E A+L ++ + ++ +L + ++ + ++ + + + K Sbjct: 5 QNRHMPHSTDAEQAILGAMLLDEKVCEDVKLKLQPDDFYHHRHRIIYEAMLTLLEQNKGV 64 Query: 533 LPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + L + + ++ + ++ +A T+ I V + L + + L Sbjct: 65 DVTTVTAFLQDHKRISEIGGVEYILTIYESVATTAHTDHYIDMVLEKSISRLIINRAQEL 124 Query: 591 LSR----------QKEEIEKQ---IAQVTAKGEAEKTAILI 618 + + + E++ ++++ + ++ ++ Sbjct: 125 IEQGYSPETSTQDLIDAAEQKFSGLSRLNQGSDFKEINNVL 165 >gi|261365557|ref|ZP_05978440.1| fels-1 prophage putative phage DNA primase [Neisseria mucosa ATCC 25996] gi|288565985|gb|EFC87545.1| fels-1 prophage putative phage DNA primase [Neisseria mucosa ATCC 25996] Length = 366 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 82/311 (26%), Gaps = 30/311 (9%) Query: 71 GDHLSFLSALLGCSFIESVQRLAAIAGV------PLPVVDPKIEKKEKIQTDLIRLIEVA 124 GD + L C F E+++ +A + + P+P P+ + + + + ++A Sbjct: 67 GDGFGLVMHYLNCDFDEALRAVAGVLNMGGANPLPIPSTRPQTQPRPEKDH----IGKLA 122 Query: 125 TDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKII 184 + A + R + + Sbjct: 123 ALW-----NGAEPITADSPAVQYLKSRGLDMAQLPENIRFLREADYWTTGEDKPLFIGRF 177 Query: 185 EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQ--VIAFGGRTLSKGESVKYLNSPETILF 242 + D G+ + A R L+ P + Sbjct: 178 ACMVCAIRDTGGELQGLHMTYFQTTYDKPYGEDGLHAPHYRKLAIKHPETSEALPAKKMR 237 Query: 243 HKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLC--QAGVQNVVSSLGT 300 ++ + + + +++ EG L+ + + + Sbjct: 238 NRKQ---------GSISGQAVHLFPIPENGRLVIAEGIETALAARELYKAYDWGLYAALS 288 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDP 359 A + + L IV+ D D P A DL + + G + + + G D Sbjct: 289 ANSMENFQFL-NGIKEIVIIADNDTPRPVGYRAAYDLAMRAIKQGIKASIWQSKTPGYDA 347 Query: 360 DSFIRCYGKTA 370 + ++ Sbjct: 348 LDELNEKKQSD 358 >gi|169607082|ref|XP_001796961.1| hypothetical protein SNOG_06594 [Phaeosphaeria nodorum SN15] gi|160707150|gb|EAT86425.2| hypothetical protein SNOG_06594 [Phaeosphaeria nodorum SN15] Length = 2238 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 23/269 (8%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 +++ D A LE +K + + RYY Q + + E Sbjct: 743 LDSQIRREQDHYARLESTVKMLESEKNTLQERYYSIQTTLAKQDDKVVRAEQEAVDAVAR 802 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + SQ + Q+ + + + E L + + + + Sbjct: 803 MESLEHELVNLKASQSMWQTIEARLTERNQELMDERDRLSKM------VTDVQSLRNEQE 856 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 N E ++ + ++ + E L + +R + Sbjct: 857 LANAENRRRLQDRVDALEGELQIAQRKLEDEVAEHKKASLQRDYERSEAQKRIEDLMKAR 916 Query: 570 NIVDVRQGYQQALA--LYKRFRLLSRQKEEIEKQIA--------QVTAKGEAEKT---AI 616 N DVR A L +R L Q + E ++ + A + E++ Sbjct: 917 NEADVRCAAADAARQQLEQRTNELRTQLQAAEDRVQALQPIPTPRAAAAQDTEESTREEE 976 Query: 617 LISILHEVHIQIHQ----IESQEAMIEGF 641 L++ + ++ ++ + +++ A IEGF Sbjct: 977 LVAQVADLQRKLDRKQEDLDAATAQIEGF 1005 >gi|325103652|ref|YP_004273306.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145] gi|324972500|gb|ADY51484.1| chromosome segregation protein SMC [Pedobacter saltans DSM 12145] Length = 1179 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 34/279 (12%), Positives = 95/279 (34%), Gaps = 22/279 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 E+L + + N T A+++ H + + K+ ++ + +++ Sbjct: 242 ENLENQEKELGEQRTNIHTQTDKLDADIQKHKFSNLTKEKNLSVQQKATNEFIAKIRAYE 301 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 ++ K R + + + L K + ++E L T+ ++ Sbjct: 302 SDKKIKNEQLRFLQDKEQRLGAELEKDKNQLNHVLYNIKRLNEDRMQEEQTLQTVSSNLN 361 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 L+E+ +EL ++ ++Q ++ +L + + ++ R Sbjct: 362 SLKEEVEEL-----------RIQQQSSKVSLDQSQKEAAQLQNKLYQTDKDIEILKIQRD 410 Query: 557 VRDAGLWSATTEANIVD---------VRQGYQQALALYKRFRLLSRQKEEIEKQI--AQV 605 + + + V + + + + L +Q+EE+++Q+ + Sbjct: 411 ALEQESIRNVEDTASKETQLSEFNKVVIELENKVESKQHQLSHLQKQEEELKEQLVLQEE 470 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 + + E L L + + +S +EGF + Sbjct: 471 SLNEDKEHLNNLSRRLDARQNEYNLTKSMVDNLEGFPES 509 >gi|269958626|ref|YP_003328413.1| replicative DNA helicase [Anaplasma centrale str. Israel] gi|269848455|gb|ACZ49099.1| replicative DNA helicase [Anaplasma centrale str. Israel] Length = 492 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 25/196 (12%), Positives = 60/196 (30%), Gaps = 27/196 (13%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S+L E L+ ++ I ++ + + +++ + Sbjct: 13 SALSAIGGLPSNIEAEQMLIGAMLRDNRICDALEDVISTDVFFDPLHGRIFDQVIKINRR 72 Query: 529 QKYFLPEEIH------QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + + L E G E L ++ + + +A ++ L Sbjct: 73 GLAANEVSLKMFFDNDEALIECGGAEYLAKIAAKASVVFDIRSVAQAVFD---AHLRRCL 129 Query: 583 AL-----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE-VHIQIHQ 630 Y +Q E+ +++ + ++G+A++ S+L E V +I Sbjct: 130 IAFGNDVVSNAYDYDSDNPAEQQIEDAAQRLFVLGSRGKADRNYHKFSVLVEDVRKKIET 189 Query: 631 IESQEAMIEGFGKMSG 646 EG + G Sbjct: 190 AR------EGANALQG 199 >gi|257061898|ref|YP_003139786.1| replicative DNA helicase [Cyanothece sp. PCC 8802] gi|256592064|gb|ACV02951.1| replicative DNA helicase [Cyanothece sp. PCC 8802] Length = 444 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 52/174 (29%), Gaps = 12/174 (6%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 L + E ++L ++ + + + + ++ + + K Sbjct: 7 LPPQNIEAEESILGGILLDREAMGRVADLITPDAFYVQAHKDIYEAALKLYAQGKPTDFL 66 Query: 536 EIHQRLCE----------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L + +LL V + + + + Sbjct: 67 TVKSILEDHQLLEKVGGTDKLNQLLDSTVAAVNIDRYAALVMDKYLRRQLISAGHEITEL 126 Query: 586 --KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + + L + +E EK+I +T K E + L + + ++ + + A+ Sbjct: 127 GFETTKELEQVLDESEKKIFSLTQKRPQEGLIPIADTLVQTYSELEKRHQKTAL 180 >gi|195483992|ref|XP_002090517.1| Mhc [Drosophila yakuba] gi|194176618|gb|EDW90229.1| Mhc [Drosophila yakuba] Length = 2153 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015 >gi|295087482|emb|CBK69005.1| hypothetical protein [Bacteroides xylanisolvens XB1A] Length = 318 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSAL---LG 82 ++ N W P +E SF N + +Y F+ G+ ++ L Sbjct: 22 PVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQELYCSDH 76 Query: 83 CSF 85 F Sbjct: 77 VPF 79 >gi|219990777|gb|ACL68762.1| RH59876p [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|254414766|ref|ZP_05028531.1| replicative DNA helicase [Microcoleus chthonoplastes PCC 7420] gi|196178614|gb|EDX73613.1| replicative DNA helicase [Microcoleus chthonoplastes PCC 7420] Length = 448 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 23/180 (12%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 S++ + + E ++L ++ P + L+ + + Q+++ F E Sbjct: 8 SIIPSSVPPQNIEAEESILGGIMLDPEAMSRVVDLLSPEAFYVSAHQEIYRSAFILHHEG 67 Query: 530 KYFLPEEIHQRLCER-------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 K + L + G ++ + ++R V + +R+ Q+ Sbjct: 68 KPTDFMSVTSWLYDHKLLDKVGGQSKIAQLIERTVSAVNIDRYAALVMDKYLRRQLIQSG 127 Query: 583 ALYKRFR-----LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + L E+ E++I +T + + L + +I + A+ Sbjct: 128 NEIVQLGYETPMALDFVLEQAEQKIFNLTQVRPQQGLVPISETLIQAFQEIETLHEGLAL 187 >gi|189031481|sp|A4IFI1|CC157_BOVIN RecName: Full=Coiled-coil domain-containing protein 157 Length = 688 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +L L + + E G R + Q Q + + + RE Sbjct: 285 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 344 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L + + +++ Q + S E ++ L E + E+ Sbjct: 345 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 402 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 L +LD + S + V + +L + R L +Q + ++++ ++ Sbjct: 403 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 462 Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641 + + + E+ ++ ++ +E ++ F Sbjct: 463 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 517 >gi|158285521|ref|XP_308355.3| AGAP007523-PB [Anopheles gambiae str. PEST] gi|157020032|gb|EAA45415.3| AGAP007523-PB [Anopheles gambiae str. PEST] Length = 2003 Score = 46.4 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 6/280 (2%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + EK + ++ E E + ELE +++ + I++++ Sbjct: 914 QEYEKKYQQAMEEKTHLAEQLQAEIELCAEAEEGRARLVARKQELEELMQDLESRIEEEE 973 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + +LQ Q + +K + Q + M+ + + Sbjct: 974 ERVNALTSEKKKLQINIQDLEEQLEEEEAARQKLQLEKVQLDAKLKKMEEDVALIEDQNH 1033 Query: 480 PSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534 ++E LL N + + +E LA ++ + + +L L D +++ Sbjct: 1034 KLVKEKKLLEERANDLSQTLAEEEEKAKHLAKLKVKHESTIAELEERLLKDHQQRQEADR 1093 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E + + Q+ + E + + A + R+ Sbjct: 1094 SKRKIETEVADLKEQINERRMQIEEMQQQLVKREEELAQTLVRIDEESAAKAAAQKTQRE 1153 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E +I + + ++ +++ ++ ++++ Sbjct: 1154 LESQLAEIQEDLEAEKLARSKAE-KQKRDLNEELEALKNE 1192 >gi|189192759|ref|XP_001932718.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187978282|gb|EDU44908.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 2205 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 23/286 (8%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R ++A +L E+ +R+ E + + D Sbjct: 845 DKLRMDLQSAERRLEDEAAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADST- 903 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLVKGKLS 477 Q + R++ L + T + + S+ + Q S +K KL Sbjct: 904 ----RQQLEQRIKDLQNQLQTAEERVAALQPRPESTEEADSASREEELIAQVSELKRKLE 959 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +K EA + + I QE L ++L L S ++K ++ Sbjct: 960 RKEEDLEA-VTAQIAGFQDIAQEAENRLQTF---VEAHERLQEQL-SLAEQEKDATINDL 1014 Query: 538 HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 QR+ + EL Q +++ T EA IV ++ A + Sbjct: 1015 QQRVNDISSELATSSTELTELRGQHEQETLVLKQEKETLEAEIVRLQNDVADYKAEAENQ 1074 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + +I ++ AQ + E +K A + L EV Q +++++Q Sbjct: 1075 TQYVKTQADIAER-AQKDYEHEFQKHAESMQKLREVRDQYNELQTQ 1119 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 22/246 (8%), Positives = 75/246 (30%), Gaps = 34/246 (13%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++ L ++Y + + + ++ +QS + + Sbjct: 735 IKLLQSEKDSLQERYNKVQATMAQQDDNLVKATQNAAEAEARLQSLQGEMVQLRASQQMS 794 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A + + L L + L+ + L+ ++ + +++ L Sbjct: 795 ATIEVRLKERNQELMTERDRLSSMVSSIQSLRNEAELATAESRRELQNSVDKLRMDLQSA 854 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------LLSR 593 ++L+ + + + + ++ ++ + L + Sbjct: 855 E-----RRLEDEAAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADSTRQQLEQ 909 Query: 594 QKEEIEKQIAQVTA--------------KGEAEKTAILISILHEVHIQIHQ----IESQE 635 + ++++ Q+ A + LI+ + E+ ++ + +E+ Sbjct: 910 RIKDLQNQLQTAEERVAALQPRPESTEEADSASREEELIAQVSELKRKLERKEEDLEAVT 969 Query: 636 AMIEGF 641 A I GF Sbjct: 970 AQIAGF 975 >gi|148683885|gb|EDL15832.1| benzodiazapine receptor associated protein 1 [Mus musculus] Length = 1672 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 90/244 (36%), Gaps = 19/244 (7%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP---SQRLMQSSLV 472 ++Q LR +++++L +K R ++ + ++ + S + Sbjct: 141 ENQMLRKSSFPETEEKVRRLKRKNAELAVIAKRLEERAQKLQETNMRVVSAPVPRPGSSL 200 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + R L T + L + +++A ++ E ++L + L E + Sbjct: 201 ELCRKALARQRARDLSETA----SALLAKDKQIAALQ---RECRELQARLSLVGKEGPQW 253 Query: 533 LPEEIHQRLCERGFGELLK---QLDRQVRDAGLWSATTEANIVDVRQGYQQALAL---YK 586 L RL E+L+ Q+ + + L A + R Q + Sbjct: 254 LHMRDFDRLLRESQREVLRLQRQIALRNQREPLRPARSPGPTAPSRAVLQDDVESPQVVL 313 Query: 587 RFRLLSRQKEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA-MIEGFGK 643 R ++ +++E ++ + + ++ E+ +Q+ +++ A ++E + Sbjct: 314 REPEKQQRVQQLESELCKKRKKCESLEQEARKKQRRCEELELQLRAAQNENARLVEENSR 373 Query: 644 MSGR 647 +SGR Sbjct: 374 LSGR 377 >gi|29124550|gb|AAH48916.1| Efcab4a protein [Mus musculus] Length = 435 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577 S +E E + Q L R L ++L++Q+ + + + R Sbjct: 217 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 276 Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632 L L R + L R ++ E+E+Q+ + L + Q+ Q + Sbjct: 277 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 334 Query: 633 SQEAMIEGFGKMSGR 647 Q + +E G+ GR Sbjct: 335 EQLSRLE--GEAQGR 347 >gi|195383822|ref|XP_002050624.1| GJ22258 [Drosophila virilis] gi|194145421|gb|EDW61817.1| GJ22258 [Drosophila virilis] Length = 2035 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 18/242 (7%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R ++ I + + AR + + +S V S Sbjct: 1768 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1820 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530 +K L+ L L N + Q+ + A + N EL+ + + + Sbjct: 1821 RKAQLQIEQLTTELANEKSTSQKNENQRALLERQNKELKAKLAEIETAQRTKVKATIATL 1880 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588 + ++L G LL+Q + D + T V Q +Q L R Sbjct: 1881 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1940 Query: 589 RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646 +LL R +E E+++ + T K + ++ + E ++ +I+ ++++ G G S Sbjct: 1941 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSST 2000 Query: 647 RL 648 RL Sbjct: 2001 RL 2002 >gi|39939032|ref|NP_950798.1| hypothetical protein PAM_546 [Onion yellows phytoplasma OY-M] gi|39722141|dbj|BAD04631.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 158 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55 MNY ++ IK + H P+S V + N + ++ CP H K P+ H Sbjct: 1 MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHF 51 Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113 +C+ C D + A+ SF E++Q++A ++ + ++ KI Sbjct: 52 TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110 Query: 114 Q----TDLIRLIE 122 L + ++ Sbjct: 111 TINPLKQLYQPMK 123 >gi|260807192|ref|XP_002598393.1| hypothetical protein BRAFLDRAFT_128123 [Branchiostoma floridae] gi|229283665|gb|EEN54405.1| hypothetical protein BRAFLDRAFT_128123 [Branchiostoma floridae] Length = 1869 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 26/295 (8%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRE-TENRSFNTPDERAELEIHLKNCINHI-KDQ 418 R + L ++ L + + +R + +++I K++ Sbjct: 738 DISRSLDEEHTNSLKETQKDVLKNLSSKHGVDAVRQQEIMDRFRKDQENLEYMSNIRKER 797 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW--KKNARHRDQKGPSQRLMQSSLVKGKL 476 + + ++ + +++ + + ++ + + Q+ + LV +L Sbjct: 798 QTQDLQAKLAARKARKIADAMRQAEEDAAKRFIDEQEKQLQQVAQLQQQEASAGLVIPQL 857 Query: 477 SKKPSLREAALLLTLINH----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-- 530 + SL E A+ H ++ E ++ K+ + E++ Sbjct: 858 APGDSLEEQAIKK---EHQRAQDELVARHKDEREELE------AKMDQEMRKKEAEERKK 908 Query: 531 -YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ + + EL + D + A E + D+ A ++ Sbjct: 909 FEAEREKALREKKNKQAAELAARKDLTEEEMAALLAAHEQELEDLNDRL-DAERSRQQLS 967 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH----IQIHQIESQEAMIEG 640 L + ++ K EAE T L+ E+ Q+ + E Q AMIEG Sbjct: 968 LRDKLLARKRNRLQNKQRKQEAEMTKELLEQKKELKEARTKQVKEAEKQ-AMIEG 1021 >gi|198283100|ref|YP_002219421.1| hypothetical protein Lferr_0968 [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247621|gb|ACH83214.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 53993] Length = 916 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 55/153 (35%), Gaps = 7/153 (4%) Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + Q+ + L ++ ELQK + F + E R E + ++ Sbjct: 353 LSQDFVERLCSSDHEGTELQKAIEDVV--FAKLDEIQKEGYSSFGELRKAREAASNIQKE 410 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 L + E + +++ Q + + + +Q EE++KQ+ T + + Sbjct: 411 ALRGELATLHKE--VDRLQEAIDQRGSKIRAKAEVEKQVEELKKQLPDATQSVDQKILEE 468 Query: 617 LISI---LHEVHIQIHQIESQEAMIEGFGKMSG 646 L L E+ QI + IEG + G Sbjct: 469 LEKQQILLRELEEQIANRSRRRRTIEGAIESYG 501 >gi|332880579|ref|ZP_08448253.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681567|gb|EGJ54490.1| ATP-dependent chaperone protein ClpB [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 866 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 74/273 (27%), Gaps = 41/273 (15%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + L +DM + + + I Sbjct: 220 RILRGDVPENLKDKQLYSLDMGALIAGAKYKGEFEERLKSVINEVTKSEGRI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++N P L + L + R+ + Sbjct: 328 ERRFQTVMVNEPDTLSTI---------------SILRGLKERYENHHKV-------RIQD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + D + I + + A L + + +EIE+++ Sbjct: 366 DAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEIERRLK 418 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 Q+ + EA K L ++ +I +++ QE+ Sbjct: 419 QLEIEREAIKRENDQPKLEQLSKEIAELKEQES 451 Score = 43.0 bits (99), Expect = 0.15, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 20/217 (9%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + + +++ + + K +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTLSTISILRGLKERYENHHKVRIQDDAIIAAVELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + +EI +RL + + + R Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRME-----RDSVPEELDEIERRLKQLEIER--EAIKR 429 Query: 556 QVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + L + E + ++ ++ L + + +Q E+++ + + +G+ Sbjct: 430 ENDQPKLEQLSKEIAELKEQESSYKAKWEAERGLVNKIQQNKQQIEQLKFEAERAEREGD 489 Query: 611 AEKTAI--------LISILHEVHIQIHQIESQEAMIE 639 K A L ++ + Q+ + +AMI+ Sbjct: 490 YGKVAEIRYGKLKALEDEINRIQDQLKDTQGGDAMIK 526 >gi|255017997|ref|ZP_05290123.1| DNA primase [Listeria monocytogenes FSL F2-515] Length = 93 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 41/100 (41%), Gaps = 12/100 (12%) Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 P + + + L+ L+ + + ++ + KR++ Sbjct: 1 NDADPTKFMDSVPDAAMKGLISSLEMVIS-----------PDEQGKPQFEDYIRSLKRYK 49 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 L ++K+E+E+++A + + E ++ + +++ Q++ Sbjct: 50 -LEQKKKELEQELATYNRENDNENEIRVMLEIVQLNRQLN 88 >gi|24660442|gb|AAH39612.1| MYO18A protein [Homo sapiens] Length = 2002 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 82/263 (31%), Gaps = 15/263 (5%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ VD KR + E+ + + D + Q ++ Sbjct: 1370 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1429 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + Q+L + +N + + + + KL ++ RE Sbjct: 1430 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1489 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 +L L E + + + ++ + S E + +E Sbjct: 1490 ML---------LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKV 1540 Query: 547 GELLKQLDRQVRDAGLWSATTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + L+ L+ +V+D I ++Q Q Y+ + + R+K E+E ++A Sbjct: 1541 KKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELEGKLA 1600 Query: 604 QVTAKGEAEKTAILISILHEVHI 626 ++ + + ++ Sbjct: 1601 TLSDQVNRRDFESEKRLRKDLKR 1623 Score = 42.6 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 29/286 (10%), Positives = 78/286 (27%), Gaps = 16/286 (5%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + + L K++ E + + ++ + + Sbjct: 1472 EEAQREKLQREKLQREKDMLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQES 1531 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ +L+ L K + K +L + K K+ ++ Sbjct: 1532 KDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLRE 1591 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEI 537 E L E + L L + ++ Sbjct: 1592 KRELEGKLATLSDQVNRRDFESEKRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQL 1651 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +L E F V+ E + + + AL ++ L R+K E Sbjct: 1652 KNQLEESEFT-----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNE 1706 Query: 598 IEKQIAQVTAKGEA---------EKTAILISILHEVHIQIHQIESQ 634 I+ ++ + + + ++ ++++ Q+ + + Sbjct: 1707 IQNRLEEDQEDMNELMKKHKAAVAQASRDLAQINDLQAQLEEANKE 1752 Score = 41.8 bits (96), Expect = 0.33, Method: Composition-based stats. Identities = 36/312 (11%), Positives = 98/312 (31%), Gaps = 44/312 (14%) Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC---INHIKDQKLRY 422 K E+L ++ + + ++ E + +++ ++ + + + DQ R Sbjct: 1550 KVKDQEEELDEQAGTIQMLEQLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRR 1609 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + RL++ ++ + K +L L + + + ++ Sbjct: 1610 DFESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAV 1666 Query: 483 REAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY---------- 531 + + I + + + + + + LQ+ + + + E + Sbjct: 1667 KARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHK 1726 Query: 532 ----------FLPEEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATT------EAN 570 ++ +L E E L+ L QV EA Sbjct: 1727 AAVAQASRDLAQINDLQAQLEEANKEKQELQEKLQALQSQVEFLEQSMVDKSLVSRQEAK 1786 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEV 624 I ++ + KR L+ + +E +++ + E E+ L L + Sbjct: 1787 IRELETRLEFERTQVKRLESLASRLKENMEKLTEERDQRIAAENREKEQNKRLQRQLRDT 1846 Query: 625 HIQIHQIESQEA 636 ++ ++ +EA Sbjct: 1847 KEEMGELARKEA 1858 >gi|157891|gb|AAA28686.1| myosin heavy chain [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584710|ref|NP_724007.1| myosin heavy chain, isoform B [Drosophila melanogaster] gi|22946668|gb|AAN10967.1| myosin heavy chain, isoform B [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|320451090|ref|YP_004203186.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01] gi|320151259|gb|ADW22637.1| ATP-dependent chaperone protein ClpB [Thermus scotoductus SA-01] Length = 861 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 17/156 (10%) Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A + +++H I + + + I + +L L S E +++ + Sbjct: 367 ALVAAAVLSHRYITERRLPD-KAIDLIDEAAARLRMALESAPEEIDTLERKKLQLEIERE 425 Query: 545 GFG--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 E LK ++ ++ +A R+ ++ +R + RQ E Sbjct: 426 ALKKEKDPDSQERLKAIEEEIAHLNQEIQKLKAEWEAEREVLKKLREAQQRLDEVRRQIE 485 Query: 597 EIEKQIAQVTAKGEAEKTAIL-ISILHEVHIQIHQI 631 E+Q + + A L L + ++ + Sbjct: 486 LAERQ-------YDLNRAAELRYGELPRLEAEVEAL 514 Score = 42.6 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 55/144 (38%), Gaps = 11/144 (7%) Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG--FGELLKQLDR 555 ++E+Y+ +R + L + + + S + LP++ + E L+ Sbjct: 351 IKEKYEVHHGVRISDPAL--VAAAVLSHRYITERRLPDKAIDLIDEAAARLRMALESAPE 408 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613 ++ E +++ ++ +R + + + + ++I ++ A+ EAE+ Sbjct: 409 EIDTLERKKLQLEIEREALKK--EKDPDSQERLKAIEEEIAHLNQEIQKLKAEWEAEREV 466 Query: 614 ---TAILISILHEVHIQIHQIESQ 634 L EV QI E Q Sbjct: 467 LKKLREAQQRLDEVRRQIELAERQ 490 >gi|270296328|ref|ZP_06202528.1| DNA primase [Bacteroides sp. D20] gi|270273732|gb|EFA19594.1| DNA primase [Bacteroides sp. D20] Length = 318 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 ++ N W P +E SF N + +Y F+ G+ ++ Sbjct: 22 PVKQQGINL-----WYKSPLREETKASFKVNTERNQWYDFALGKGGNIIALAQE 70 >gi|24584692|ref|NP_723999.1| myosin heavy chain, isoform C [Drosophila melanogaster] gi|22946659|gb|AAN10959.1| myosin heavy chain, isoform C [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|317489936|ref|ZP_07948428.1| hypothetical protein HMPREF1023_02128 [Eggerthella sp. 1_3_56FAA] gi|316910934|gb|EFV32551.1| hypothetical protein HMPREF1023_02128 [Eggerthella sp. 1_3_56FAA] Length = 1177 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 72/224 (32%), Gaps = 11/224 (4%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRY-------WKKNARHRDQKGPSQRLMQSSLVKGKL 476 + DR++ L + + K+ R++ +L + Sbjct: 252 LVDEVADRIKALAPEREQARVDQLKSDAQKELDEKRADYERERADAQSQLDDAKRQLDDA 311 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPE 535 + + E L + + E A + ++ +++ ++ Sbjct: 312 AATIAASEQGLADGQAAYDSGASELASRRASAQAQLDDAERQIAEGQAQLDAQRPQLDDA 371 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + L D S +A I + G A A R + + Sbjct: 372 AGQLQAARAQWQQGADALAAAWGDWQRQSDELDAGITRAQAGVADAAAGVDR---IQKGI 428 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + +E+QI Q+ +A+K A L + + Q + +Q A+++ Sbjct: 429 DALEEQIKQLDPDKDAQKIAELRAEQDALKAQQQDLRAQMALVQ 472 >gi|281365099|ref|NP_001162992.1| myosin heavy chain, isoform P [Drosophila melanogaster] gi|272407070|gb|ACZ94278.1| myosin heavy chain, isoform P [Drosophila melanogaster] Length = 1949 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|74000801|ref|XP_544699.2| PREDICTED: similar to cingulin-like 1 [Canis familiaris] Length = 1224 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 12/279 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + +L L + + E + + L +D+ Sbjct: 895 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKLQDEMRLMEEELRDYQRAQDEA 954 Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L R Q ++D +L K + + + + + +S + + Sbjct: 955 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1014 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE-------QK 530 + + + L+ A+ Q+ + + N +L+ L + Q Sbjct: 1015 TRSREQMEQMRSELLQERALKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1074 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E+ RL QL + + + + + + Q L R + Sbjct: 1075 EARIAELEDRLENEERDRASLQLSNRRLERKVKELVMQVDDEHLSLT-DQKDQLSLRLKA 1133 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + RQ EE E++I ++ + +K + +V+ Q+ Sbjct: 1134 MKRQVEEAEEEIDRLESS--KKKLQRELEEQMDVNEQLQ 1170 >gi|24584706|ref|NP_724006.1| myosin heavy chain, isoform I [Drosophila melanogaster] gi|22946666|gb|AAN10965.1| myosin heavy chain, isoform I [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584700|ref|NP_724003.1| myosin heavy chain, isoform F [Drosophila melanogaster] gi|22946663|gb|AAN10962.1| myosin heavy chain, isoform F [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584698|ref|NP_724002.1| myosin heavy chain, isoform J [Drosophila melanogaster] gi|22946662|gb|AAF53566.3| myosin heavy chain, isoform J [Drosophila melanogaster] Length = 1960 Score = 46.4 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1570 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1629 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1630 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1682 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1683 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1742 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1743 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1802 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1803 KGGKKAIQKLEQRVRELENE 1822 >gi|322412351|gb|EFY03259.1| hypothetical protein SDD27957_08270 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 362 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 P HD SF + FS ++GD + F+ + G SF E++ L Sbjct: 34 PEHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLMTGVSFKEALSYL 78 >gi|257793007|ref|YP_003186406.1| hypothetical protein Aaci_3014 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479699|gb|ACV60017.1| hypothetical protein Aaci_3014 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 169 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 48/151 (31%), Gaps = 33/151 (21%) Query: 34 AVKGDYWACCP--------FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 + G + A CP FH + + K +YC C KG ++F + L G SF Sbjct: 19 SRPGQWKAHCPVCGDQGRNFH------LYVSSVKDTFYCHKCGEKGGAVAFHAWLRGISF 72 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 E+ + A + P+ +K + A L + Sbjct: 73 -EAAK--AELY--------PQGTRKRN--------LHPAERLTAAQLAELGFTTRKPWRM 113 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +G+D A + + H R K Sbjct: 114 PKGVDPLAWRRQRKAMLDWIWEEYQGHERFK 144 >gi|221316432|ref|ZP_03598237.1| hypothetical protein BsubsN3_22225 [Bacillus subtilis subsp. subtilis str. NCIB 3610] Length = 346 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 100/363 (27%), Gaps = 57/363 (15%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-CHVKGDHLSFLSALLGCSFI 86 + +N + C H+ + + +YCF+ C D + + G +F Sbjct: 27 KLKGSNIIC---KTIC--HNGHSHKLTYYSNSHSFYCFTECG-HMDLYGLIGKIKGLTFF 80 Query: 87 ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 ES + + G+ K + D+ FF +D L + Sbjct: 81 ESFKFVCQRFGL-----SYGNSKYGSDKVDM--------SFFEK--FEPKDMAAEIKLLD 125 Query: 147 RGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRL 206 + I + + + D+ Y N++ Sbjct: 126 KKILDSYYDYYHKSWIEDNIS---------------------PKTMKKFNIKYSVLDNQI 164 Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDV 266 I P +G ++ R L++ +F+K + L + GA L Sbjct: 165 IIPHYDLKGNLVGVRARNLNQELVNSGKKY--MPVFYKNRFLKHPTGA--CLYGLNFNLE 220 Query: 267 RRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLS---PRIVLCFDG 323 + IIL E V+ + ++ + T +L R+++ D Sbjct: 221 QITDYGAIILCESEKSVMQIDTMFPDMSIAVALSGSTLTDTQLEIINDLGIERVIIALDK 280 Query: 324 DDP--GLRAAYKAIDLVLCHLIPGNRVN-----FVLLSRGEDPDSFIRCYGKTAFEKLIV 376 + G I+ + I + D G F KL Sbjct: 281 EFTEVGSIEEKYYIEKINSVFINKLSSRFETSVMWDVEGLLDLKDSPSDKGPETFMKLFH 340 Query: 377 ESL 379 + Sbjct: 341 NRI 343 >gi|195344578|ref|XP_002038858.1| GM17204 [Drosophila sechellia] gi|194133988|gb|EDW55504.1| GM17204 [Drosophila sechellia] Length = 2153 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015 >gi|110825729|sp|P05661|MYSA_DROME RecName: Full=Myosin heavy chain, muscle Length = 1962 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584694|ref|NP_724000.1| myosin heavy chain, isoform G [Drosophila melanogaster] gi|281365097|ref|NP_001162991.1| myosin heavy chain, isoform O [Drosophila melanogaster] gi|22946660|gb|AAN10960.1| myosin heavy chain, isoform G [Drosophila melanogaster] gi|272407069|gb|ACZ94277.1| myosin heavy chain, isoform O [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|283955982|ref|ZP_06373472.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 1336] gi|283792642|gb|EFC31421.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 1336] Length = 458 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 13/122 (10%), Positives = 40/122 (32%), Gaps = 2/122 (1%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I +++ + + ++ + + ++ + + Sbjct: 10 LERAILSSCIMSEEAYASIAGDISPKDFSLKAHEDIFKAIIACSNNKEPISISFLKKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ E+L ++ L + E +++ L +R EI +I Sbjct: 68 KKIDEEILAEILATPSMIDLPAYVNELREKSIKRQLLSFAHLLPARINENRAVSEIADEI 127 Query: 603 AQ 604 + Sbjct: 128 GK 129 >gi|195436762|ref|XP_002066324.1| GK18232 [Drosophila willistoni] gi|194162409|gb|EDW77310.1| GK18232 [Drosophila willistoni] Length = 2147 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1757 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1816 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1817 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1869 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1870 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1929 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1930 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1989 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1990 KGGKKAIQKLEQRVRELENE 2009 >gi|194884434|ref|XP_001976258.1| GG22771 [Drosophila erecta] gi|190659445|gb|EDV56658.1| GG22771 [Drosophila erecta] Length = 2156 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1766 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1825 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1826 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1878 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1879 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1938 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1939 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1998 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1999 KGGKKAIQKLEQRVRELENE 2018 >gi|206977729|ref|ZP_03238620.1| MutS2 family protein [Bacillus cereus H3081.97] gi|206744030|gb|EDZ55446.1| MutS2 family protein [Bacillus cereus H3081.97] Length = 786 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|24584702|ref|NP_724004.1| myosin heavy chain, isoform D [Drosophila melanogaster] gi|22946664|gb|AAN10963.1| myosin heavy chain, isoform D [Drosophila melanogaster] Length = 1962 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|13786876|pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. gi|13786879|pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment Length = 1184 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 39/277 (14%), Positives = 84/277 (30%), Gaps = 23/277 (8%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + + E E ++ ELE L I++++ R QA + ++QQ Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + +K + + M+ ++ + +E LL Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE------E 1011 Query: 497 ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545 + + LA+ L KL + S+ E+ E+I ++L Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL----ALYKRFRLLSRQKEEIEKQ 601 E + +L Q+ + A E + + K+ R L ++++ Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131 Query: 602 IAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEA 636 + A + L L + ++ A Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTA 1168 >gi|328541750|ref|YP_004301859.1| hypothetical protein SL003B_0126 [polymorphum gilvum SL003B-26A1] gi|326411502|gb|ADZ68565.1| hypothetical protein SL003B_0126 [Polymorphum gilvum SL003B-26A1] Length = 856 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 74/231 (32%), Gaps = 27/231 (11%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + L L + E +G + + R P R + L LR Sbjct: 412 SEVLLVLTARDEAEQTGSSQPHRFTLPQRRFSKPLARAVVEQRRDLALDANTHLRVLDAF 471 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 L+ P + + + + + L + D + L ++ + + Sbjct: 472 DALLLAPEVFGVDTRSYLGLDF---AYRNLIAARSDDDLRALLPLLWDLALTIEDGDLS- 527 Query: 549 LLKQLDRQVRDAGLWSATTEANIVD----------VRQGYQQALALYKRFR--------- 589 L ++ R+ ++A + A+ + Q Y QALA R Sbjct: 528 LAERALREAQEALRKALEEGASDEEIARLTENLRQALQEYMQALAEQMRQNPQAMQPFNP 587 Query: 590 ---LLSRQ-KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +LS+Q E+ ++I ++ G + L++ + + + Q A Sbjct: 588 GQQMLSQQDLNEMLRRIEELARTGSRDAARELLAQMQRMLENLQAGRPQMA 638 >gi|261335322|emb|CBH18316.1| hypothetical protein, conserved, (fragment) [Trypanosoma brucei gambiense DAL972] Length = 1209 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 92/242 (38%), Gaps = 28/242 (11%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + +R +L + + K+ + K ++ ++ L SK +E Sbjct: 951 LKELRKQLSDVTDSKSSLEKELKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEKE 1010 Query: 485 AALLLTLINH-----PAILQEQYQELADIRYD----NNELQKLWSFLFSDFVEQKYFLPE 535 L ++ ++ +E ++L+D+ EL++L L + E Sbjct: 1011 LKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEKELKELRKQLSDVTDSESSLEKE 1070 Query: 536 EIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYK 586 + ++L + + LK+L +Q+ D ++ E + ++R+ L K Sbjct: 1071 -LRKQLSDVTDSKSSLEKELKELRKQLSDVADSKSSLEKELKELRKQLSDVTDSKSSLEK 1129 Query: 587 RFRLLSRQKEE-------IEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQEAM 637 + L +Q + +EK++ ++ + A+ + L L E+ Q+ + E+ Sbjct: 1130 ELKELRKQLSDVAGSKSSLEKELKELRKQLSDVADSKSSLGKELKELRKQLSDVTDSESS 1189 Query: 638 IE 639 +E Sbjct: 1190 LE 1191 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 82/216 (37%), Gaps = 18/216 (8%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + +R +L + + + + + ++ L SK +E Sbjct: 732 LKELRKQLSDVNASKASLEKELRKQLSDVTDSKSSLEKELKELRKQLSDVTDSKSSLEKE 791 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L L P+ + + L EL++L L + E + ++L + Sbjct: 792 ---LKELRKQPSDVTDSKSSLE------KELKELRKQLSDVADSKSSLEKE-LRKQLSDV 841 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + L++++R A +++++ ++++ +Q + L ++ +E+ KQ++ Sbjct: 842 AGSK--SSLEKELRKQLSDVAGSKSSLENELKELRKQLSDVADSKSSLEKELKELRKQLS 899 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 V A+ + L L E+ Q+ + ++ +E Sbjct: 900 DV-----ADSKSSLEKELKELRKQLSDVTGSKSSLE 930 Score = 41.8 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 43/281 (15%), Positives = 106/281 (37%), Gaps = 27/281 (9%) Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQ------LFQK 438 ++E + + ++ LE LK + D + + +R +L +K Sbjct: 710 LEKELRKQLSDVAGSKSSLEKELKELRKQLSDVNASKASLEKELRKQLSDVTDSKSSLEK 769 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE--AALLLTLINHPA 496 + E + +++ R S + K S + L+E L + + Sbjct: 770 ELKELRKQLSDVTDSKSSLEKELKELRKQPSDVTDSKSSLEKELKELRKQLSDVADSKSS 829 Query: 497 ILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPE--EIHQRLCE-----RGFGE 548 + +E ++L+D+ + L ++L L + E E+ ++L + + Sbjct: 830 LEKELRKQLSDVAGSKSSLEKELRKQLSDVAGSKSSLENELKELRKQLSDVADSKSSLEK 889 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--------ALYKRFRLLSRQKEEIEK 600 LK+L +Q+ D ++ E + ++R+ L K+ ++ K +EK Sbjct: 890 ELKELRKQLSDVADSKSSLEKELKELRKQLSDVTGSKSSLEKELRKQLSDVNGSKSSLEK 949 Query: 601 QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQEAMIE 639 ++ ++ + + + L L E+ Q+ + ++ +E Sbjct: 950 ELKELRKQLSDVTDSKSSLEKELKELRKQLSDVTGSKSSLE 990 Score = 39.1 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 43/370 (11%), Positives = 107/370 (28%), Gaps = 29/370 (7%) Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 L S +++ + + + D + G Sbjct: 511 LRNEDSPQQSSCADADSKRQRIQPIAQSRKDVNQMRDSSRQLHSITKNCEE---KIRQSG 567 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 N + + D + + ++ K E + + + Sbjct: 568 NTSTAIFHTAQCDEQMSQNHLQDKKKNEKQEMNREKLEASLKGEMRGLNEQLSEMTGSMT 627 Query: 406 IHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 + K + R + +++ +QL ++ S + + D G Sbjct: 628 LLEKELKKQLNKVTESRALMEKELKELRKQLSGVTDSKSSLEKELKELRKQLSDVTGSKS 687 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 L + K + ++L + ++ EL++L L Sbjct: 688 SLEKELKELRKQLSDVADSLSSL------EKELRKQLSDVAGSKSSLEKELKELRKQLSD 741 Query: 525 DFVEQKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + E + ++L + + LK+L +Q+ D ++ E + ++R+ Sbjct: 742 VNASKASLEKE-LRKQLSDVTDSKSSLEKELKELRKQLSDVTDSKSSLEKELKELRKQPS 800 Query: 580 QALALYKRFRLLSRQKEEIEKQI---AQVTAKGEAEKTAILI-------SILHEVHIQIH 629 L ++ +E+ KQ+ A + E E L S+ E+ Q+ Sbjct: 801 DVTDS---KSSLEKELKELRKQLSDVADSKSSLEKELRKQLSDVAGSKSSLEKELRKQLS 857 Query: 630 QIESQEAMIE 639 + ++ +E Sbjct: 858 DVAGSKSSLE 867 >gi|228911826|ref|ZP_04075591.1| hypothetical protein bthur0013_59420 [Bacillus thuringiensis IBL 200] gi|228847823|gb|EEM92712.1| hypothetical protein bthur0013_59420 [Bacillus thuringiensis IBL 200] Length = 167 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 40 WACCPFHDEKTPSFHCNDSKGFYYCF-SCHVKG--DHLSFLSALLGCSFIESVQRLAAIA 96 CPFHD+K S N S +C+ C DH S L L G + E+ L Sbjct: 1 MCKCPFHDDKEDSMVVNVSSDNCWCYAGCGDGKQIDHFSGLMLLHGWTNTEAQNYLLKAL 60 Query: 97 GVPLPVVDPKIEKKEKIQTDLIRLIEVATD 126 + + + ++K+ Q + + ++ D Sbjct: 61 NLNVNLNRKAMQKEIAKQKVIHKKMQQMKD 90 >gi|322792325|gb|EFZ16309.1| hypothetical protein SINV_06162 [Solenopsis invicta] Length = 951 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 91/286 (31%), Gaps = 15/286 (5%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + ++ ++ ++ + + + K + ++ + Sbjct: 352 SDGEEGEEGGVYRQRYEHAIRELEFTKRKMAQQHEDDLEQLVGLKKQLEKKLADAYEEVE 411 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS---SLVKGKL 476 + + R+Q+L + +N ++ Q+ L + K Sbjct: 412 EQRQVVGQWKRRVQKLNGEMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKA 471 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV----EQKYF 532 ++ RE + + + Q +I L+ L L E++ Sbjct: 472 QRERLAREKEI--AIAEKFTVEQNLSDARLEIELKEERLRTLTQELEELTFGGKTEEEVA 529 Query: 533 LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 ++ L + + E L L QV+ E +I R+ ++ + +R Sbjct: 530 QLKKAKHELEKRAKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEM--QQRDEE 587 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQ 634 L + K++ + ++ E E L+ HE+ ++ +E Q Sbjct: 588 LEDVRGNAHKKVKALESQLENEHEERTILLREKHELERRLVALEEQ 633 Score = 41.4 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 28/251 (11%), Positives = 89/251 (35%), Gaps = 31/251 (12%) Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + + +++Q R + + + Q + + ++ AR ++ + Sbjct: 430 EMHDLRLLLEEQTARNNLLEKKQRKFDSETQNLMNDLRQEKAQRERLAREKEIAIAEKFT 489 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS-----F 521 ++ +L +L L+E L + QEL ++ + +++ Sbjct: 490 VEQNLSDARLE--IELKEERL-----------RTLTQELEELTFGGKTEEEVAQLKKAKH 536 Query: 522 LFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR---- 575 + + +++ ++ E+ L +++Q ++ + + DVR Sbjct: 537 ELEKRAKDQEEELDDLAGQVQLLEQAKLRLEMSIEQQRKEMRKEMQQRDEELEDVRGNAH 596 Query: 576 ----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQI 628 Q ++ +L R+K E+E+++ + + ++ A + + ++ Sbjct: 597 KKVKALESQLENEHEERTILLREKHELERRLVALEEQDRTDRAAEAETMQRLKRDLKRTK 656 Query: 629 HQIESQEAMIE 639 + + M+E Sbjct: 657 ALLRDAQTMLE 667 >gi|321469741|gb|EFX80720.1| hypothetical protein DAPPUDRAFT_50846 [Daphnia pulex] Length = 1597 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 1/137 (0%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +E + + E ++ L ++ + + G + + L +R Sbjct: 522 KELKDAIGQRKLAMTEYTEVSDKLSELRQQKAKLSRQVRDKEEELEGTLQKMDALRNDLR 581 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-TAIL 617 A EA +++ + L +R +R E +++ Q GEA + L Sbjct: 582 RAEKLRRDLEARAEELQADVVREKRLRERAEEHARSLHEDMERLQQKAQAGEAAMNSMEL 641 Query: 618 ISILHEVHIQIHQIESQ 634 L + ++ + E Q Sbjct: 642 NQELLRLRSELEKQEMQ 658 >gi|313224638|emb|CBY20429.1| unnamed protein product [Oikopleura dioica] Length = 1257 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 44/284 (15%), Positives = 101/284 (35%), Gaps = 18/284 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + +KL L D ++E + D LE + N +QKLR Sbjct: 638 RMSLEEEAQKLREAMRDLEDKC--TKSEFDNRQKEDRLVLLERDNADFANRENEQKLRSE 695 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP-------SQRLMQSSLVKGKL 476 L+ ++ +H R + + + + +S ++ +L Sbjct: 696 NISRENHELKIQLEQARRDHENRIRTESRQKSDQFEAEIGSLTELLEREKKKSETLEKQL 755 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + E + + + ++E+ EL D + ++ L + E+ Sbjct: 756 GELHDQHETQQYFATL-YKSQVREKKDELEDEK---ANIEALNGRIQQLEQEKAKMNVAH 811 Query: 537 I-HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + ++ F + L +L + E + +R+ Q + ++R+ Sbjct: 812 MKMTEERQQRFNQELDRLANESSGISHREL--EDSKSRIRELEQALFNANDSYEEINREN 869 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E ++++I ++ G E A L + HE ++ + SQE +++ Sbjct: 870 EMLQRKIDELD--GYEEHYANLQNQWHEEKTELEKKLSQEILLK 911 >gi|297623009|ref|YP_003704443.1| peptidoglycan-binding lysin domain-containing protein [Truepera radiovictrix DSM 17093] gi|297164189|gb|ADI13900.1| Peptidoglycan-binding lysin domain protein [Truepera radiovictrix DSM 17093] Length = 532 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 8/143 (5%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 +E+ + L+ E +L L + E++ + R E L+ R Sbjct: 126 DAAREEQEALSA------ENAELREELEAARAERQAQEQQLQDLREENAALQEELETARR 179 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 A A EA + + + L ++ L + E++ Q+ + Sbjct: 180 DAEAATAAQAELEAAQRERDEARARVAELSEQLEALRSESAELQAQLQAAEEV--QAQLE 237 Query: 616 ILISILHEVHIQIHQIESQEAMI 638 L + E ++ ++ + A + Sbjct: 238 TLQAQRQEQTQELQRLREENASL 260 >gi|282876956|ref|ZP_06285805.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC 35310] gi|281300910|gb|EFA93230.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC 35310] Length = 863 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 42/140 (30%), Gaps = 10/140 (7%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + KL S E + + ++ + D + Sbjct: 389 AIDLMDEAAAKLRMERDSVPEELDEITRKLKQLEIEREAIKRENDEVKIKQLDKDIAELH 448 Query: 567 TEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI--------LI 618 E R ++ L + + ++ E + + + +G E+ A L Sbjct: 449 EEE--QSFRAKWESEKNLVNKIQQDKQEMENLRFEADRAEREGNYERVAEIRYGKLKSLQ 506 Query: 619 SILHEVHIQIHQIESQEAMI 638 + + +Q+ + EAM+ Sbjct: 507 DDIDNIKLQLKATQGGEAMV 526 >gi|195035369|ref|XP_001989150.1| GH11564 [Drosophila grimshawi] gi|193905150|gb|EDW04017.1| GH11564 [Drosophila grimshawi] Length = 2153 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1996 KGGKKAIQKLEQRVRELENE 2015 >gi|119195365|ref|XP_001248286.1| hypothetical protein CIMG_02057 [Coccidioides immitis RS] Length = 1614 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 66/219 (30%), Gaps = 16/219 (7%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++RL ++ + GR ++ +Q S G + + S E L Sbjct: 753 KERLYHEIEELKLQRRFDGRSIAGDSIFERSASRAQDRSASRASDGTRASRMSDTERESL 812 Query: 489 L------------TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + + + + +++I + Q+ + + + Sbjct: 813 ETKNGELRDQVSTLKLENQGLRAQLDEYMSEIETMDRAYQEDMDQAEEEVQTLQLERDQA 872 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I L E EL + + + ++ + + R L + Sbjct: 873 I--HLAEEREAELQDLKAEAQEEINALEDELDLKTDEGQRMEAELRNQQENLRALQAEMR 930 Query: 597 EIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633 + I ++ A+ +K + L + + ++ +E Sbjct: 931 SANEGILRLEEDAQNNLQKYKAVQQELEDANRELEALEK 969 >gi|24584696|ref|NP_724001.1| myosin heavy chain, isoform E [Drosophila melanogaster] gi|22946661|gb|AAN10961.1| myosin heavy chain, isoform E [Drosophila melanogaster] Length = 1962 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|325836796|ref|ZP_08166263.1| replicative DNA helicase [Turicibacter sp. HGF1] gi|325491174|gb|EGC93463.1| replicative DNA helicase [Turicibacter sp. HGF1] Length = 453 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 59/161 (36%), Gaps = 15/161 (9%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + + E A+L ++ + ++ +L + ++ + ++ + + + K Sbjct: 5 QNRHMPHSTDAEQAILGAMLLDEKVCEDVKLKLQPDDFYHHRHRIIYEAMLTLLEQNKGV 64 Query: 533 LPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + L + + ++ + ++ +A T+ I V + L + + L Sbjct: 65 DVTTVTAFLQDHKRISEIGGVEYILTIYESVATTAHTDHYIDMVLEKSISRLIINRAQEL 124 Query: 591 LSR----------QKEEIEKQ---IAQVTAKGEAEKTAILI 618 + + + E++ ++++ + +K ++ Sbjct: 125 IEQGYSPETSTQDLIDAAEQKFSGLSRLNQGSDFKKINNVL 165 >gi|148686151|gb|EDL18098.1| EF-hand calcium binding domain 4A, isoform CRA_d [Mus musculus] Length = 433 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577 S +E E + Q L R L ++L++Q+ + + + R Sbjct: 215 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 274 Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632 L L R + L R ++ E+E+Q+ + L + Q+ Q + Sbjct: 275 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 332 Query: 633 SQEAMIEGFGKMSGR 647 Q + +E G+ GR Sbjct: 333 EQLSRLE--GEAQGR 345 >gi|157118639|ref|XP_001659191.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108883253|gb|EAT47478.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] Length = 2001 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 ++ E E + ELE +++ I++++ R + + +LQ Q + Sbjct: 937 EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSSEKKKLQINIQDLEEQ 996 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + Q + M+ + + + L+E +L N + + Sbjct: 997 LEEEEAARQKLQLEKVQLDAKLKKMEEDVALTEDQNQKLLKEKKILEERANDLSQTLAEE 1056 Query: 503 QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +E LA ++ + + +L L D +++ + E + + Q+ Sbjct: 1057 EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRMQI 1116 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + E + + A + R+ E +I + + ++ Sbjct: 1117 EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKAQRELESQLAEIQEDLEAEKLARSKAE 1176 Query: 618 ISILHEVHIQIHQIESQ 634 +++ ++ ++++ Sbjct: 1177 -KQKRDLNEELEALKNE 1192 >gi|258511137|ref|YP_003184571.1| ParB domain-containing protein nuclease [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477863|gb|ACV58182.1| ParB domain protein nuclease [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 422 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 69/230 (30%), Gaps = 23/230 (10%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +R Q + S K + +AA L Sbjct: 91 ERRSQDDDPIRKAKRAKFLKEYWGVHRGVNQYSRVNQNGESPKTSKDIAEAVGTDAAHLP 150 Query: 490 TLINHPAILQEQYQELADIRYDN-----------NELQKLWSFLFSDFVEQKYFLPEEIH 538 L+ ++ E ++ + +E + L+ E+ +EI Sbjct: 151 RLLKLNDLIPELQTLVSASKLGTTAAEQLAHLTPDEQRALFQAFGEAIGERTVAEAKEIR 210 Query: 539 QRLCER------------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 +++ E L++L R++ A A A + D ++ +QA Sbjct: 211 RQIEEERRLREAAEKRVRELEGSLQRLTREIEAAKDEPAALRAALEDTQRELEQARRELA 270 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + EEI++ + + + + K ++ ++ + + EA Sbjct: 271 ERPRIEVVSEEIKRALDDLRKQNDELKASLAEQERLADKLRKEKAAALEA 320 >gi|291295274|ref|YP_003506672.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279] gi|290470233|gb|ADD27652.1| ATP-dependent chaperone ClpB [Meiothermus ruber DSM 1279] Length = 854 Score = 46.0 bits (107), Expect = 0.017, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 57/180 (31%), Gaps = 16/180 (8%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAI---------LQEQYQELADIRYDNNELQKL 518 ++L + + +K E ++ P++ ++E+Y+ +R + L Sbjct: 305 ATTLDEYREIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAA 364 Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 ++K L+ + E +++ Sbjct: 365 AQLSHRYIADRKLPDKAIDLVDEAAARLRMALESSPESIDALNRRKLQLEIEREALKK-- 422 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-----TAILISILHEVHIQIHQIES 633 + R L ++ E+E +I + A+ EAE+ L EV QI Q E Sbjct: 423 ETDAESKFRLGELEKEIAELEAEIKKQQAEWEAEREIMQKLRAAQQRLDEVRTQIEQAER 482 >gi|194098199|ref|YP_002001247.1| replicative DNA helicase [Neisseria gonorrhoeae NCCP11945] gi|193933489|gb|ACF29313.1| replicative DNA helicase [Neisseria gonorrhoeae NCCP11945] Length = 467 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|148238341|ref|YP_001223728.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803] gi|147846880|emb|CAK22431.1| DNA gyrase/topoisomerase IV, subunit A [Synechococcus sp. WH 7803] Length = 821 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 7/231 (3%) Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 I I+D+ R + R + + Q Q Sbjct: 292 IADIRDESDREGMRVVVELRRDADPDAVLKDLQRRTSLQSNFGAIMLALVDGQP--QQLS 349 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 ++ L RE L+ + +++ + + + LQ++ + + Sbjct: 350 LRRLLQTFLDYRELTLIRRTSHALRKAEDRLEVVEGLITALQSLQRVIAMIQEAQDAAAA 409 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FR 589 +H L ER +L R++ S EA + + + L + Sbjct: 410 RASLMVHLDLSERQADAVLAMPLRRLTGLERESLRQEAEELRAERQRLKLLLDNRDQLLD 469 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI---QIHQIESQEAM 637 L ++ +++K+ A E L++ ++ + ++ EA+ Sbjct: 470 ALVQELRQLKKRFATPRRTRLVEGGDHLLAERAASQRPNAELQRRQALEAL 520 >gi|269120616|ref|YP_003308793.1| replicative DNA helicase [Sebaldella termitidis ATCC 33386] gi|268614494|gb|ACZ08862.1| replicative DNA helicase [Sebaldella termitidis ATCC 33386] Length = 458 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 65/183 (35%), Gaps = 29/183 (15%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL ++ P +L E + + + + N + ++ + + + L Sbjct: 14 AEEALLGSIFIKPDVLSEIIELVTEDDFYKNNYKIIFMEMKEIYRSSAVIDSLLLINSLN 73 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +G +L+ + + L A A + Y Q + R + R+ + +I Sbjct: 74 RKG---VLEDIGGEQLIYDLTEAVPTAA---NAKMYAQII----RDNAVQRKLIDTGSKI 123 Query: 603 AQVTAKGEAEKTAIL---------ISILHEVH-----IQIH--QIESQEAMIEG---FGK 643 ++ KG + +L I+ + ++ ++E E M +G G Sbjct: 124 VEMAYKGYDDVQTMLDKSESMIFKIAEFKQKKDVITLKELANLELERMEKMPKGSGITGI 183 Query: 644 MSG 646 SG Sbjct: 184 SSG 186 >gi|217962033|ref|YP_002340603.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus AH187] gi|222098016|ref|YP_002532073.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus Q1] gi|229141279|ref|ZP_04269817.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26] gi|226723047|sp|B7HRJ3|MUTS2_BACC7 RecName: Full=MutS2 protein gi|254766387|sp|B9J054|MUTS2_BACCQ RecName: Full=MutS2 protein gi|217064711|gb|ACJ78961.1| MutS2 family protein [Bacillus cereus AH187] gi|221242074|gb|ACM14784.1| DNA mismatch repair protein, MutS family [Bacillus cereus Q1] gi|228642060|gb|EEK98353.1| hypothetical protein bcere0013_43720 [Bacillus cereus BDRD-ST26] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|157147869|ref|YP_001455188.1| hypothetical protein CKO_03675 [Citrobacter koseri ATCC BAA-895] gi|157085074|gb|ABV14752.1| hypothetical protein CKO_03675 [Citrobacter koseri ATCC BAA-895] Length = 1100 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 19/215 (8%) Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI--- 497 + + ++ + + + +QS+L + K R + N P + Sbjct: 15 PDAKLIAQELEQAKAAKPAQPEAVEALQSALNALEERKGSLERAEQYQQVIDNFPKLSAT 74 Query: 498 LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 L+ Q L D L + + + +R R + L QL Sbjct: 75 LRAQLNNLRDEPRSVPPGMSTDALSQEILQVSSQLLDKSRQAQQERERAREIADSLSQLP 134 Query: 555 RQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRL--LSRQKEEIE---------KQ 601 +Q DA E I QA L + L Q +E+E ++ Sbjct: 135 QQQTDARRQLNEIERRIGTASGNSPLNQAQNLSMQAESARLKAQVDELELAQLSANNRQE 194 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +A++ ++ +++ L + L + Q++ +EA Sbjct: 195 LARMRSELAEKQSQQLDAWLQALRNQLNSQRQREA 229 >gi|220930120|ref|YP_002507029.1| hypothetical protein Ccel_2740 [Clostridium cellulolyticum H10] gi|220000448|gb|ACL77049.1| conserved hypothetical protein [Clostridium cellulolyticum H10] Length = 310 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 3/119 (2%) Query: 60 GFYYCFSCHVKGDHLSFLSALLGCSFIES-VQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 ++ S G + F+ SF E+ V L G+ +++EK L Sbjct: 51 NRWFDHSTEKGGLAIDFVQKFYEVSFQEAVVLLLGGEKGIEFTQASESTDEQEKKTFVLP 110 Query: 119 RLIEVATDFFHHSLKNARDKRL--HYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 F + +K R + E+ + A + D + R R+ Sbjct: 111 EANSDMRRVFAYLIKQRFIDRNVLACFAREKLLFEDAKYHNAVFVGFDEKGVARHAHRK 169 >gi|228917190|ref|ZP_04080747.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935862|ref|ZP_04098672.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823630|gb|EEM69452.1| hypothetical protein bthur0009_43070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842391|gb|EEM87482.1| hypothetical protein bthur0012_44020 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|123490058|ref|XP_001325524.1| hypothetical protein [Trichomonas vaginalis G3] gi|121908425|gb|EAY13301.1| hypothetical protein TVAG_164100 [Trichomonas vaginalis G3] Length = 710 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 42/286 (14%), Positives = 95/286 (33%), Gaps = 12/286 (4%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 IR + F+K + + + + I+ + + Sbjct: 163 IRNNHRNKFKKFYHPKFKELMNEFNQMQKIIDTKLKRHNELKLFIRDLQFIIIQLESFQD 222 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKN--ARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + F T+ A +D + M S+V + S + Sbjct: 223 MLPVEHDRFFSEPFDPQFTDTQFSKAQIVSMVLAPIKDTITSLKMFMDPSIVTEQASSEI 282 Query: 481 SLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEI 537 E ++ LI P+ LQ +Y+ ++ E K+ + + EQK L E+ Sbjct: 283 QKIEDSI-KNLIGDPSNRLQARYKSEKGDNMNDEEASKISDLKGIIQELEEQKSQLDSEL 341 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ++L + + ++ R+ + + I ++ KR + L ++ +E Sbjct: 342 QEKLSYKESK--INEITRRSEEWENEKKEIQKEIKNLSSSGNSPENQAKRIKQLEKEVQE 399 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES----QEAMIE 639 E ++A+ ++ E+ Q+ I++ Q A+I+ Sbjct: 400 KESELAKYDESNTKQQYKENQKKFEELRNQLKTIQTDIIYQRALIQ 445 >gi|119574313|gb|EAW53928.1| myosin, heavy polypeptide 11, smooth muscle, isoform CRA_d [Homo sapiens] Length = 1266 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 36/271 (13%), Positives = 90/271 (33%), Gaps = 22/271 (8%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + + E E ++ ELE L +++++ R QA R ++ Q Sbjct: 893 QEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDRGQQLQAERKKMAQQM 952 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + +K + + ++ ++ +E LL Sbjct: 953 LDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKLSKERKLLE------E 1006 Query: 497 ILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKYFLPEEIHQRLCER--G 545 + + LA+ L KL + S+ E+ E++ ++L Sbjct: 1007 RISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKLKRKLEGDASD 1066 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 F E + L Q+ + + A E + +A + ++ E+E I+ + Sbjct: 1067 FHEQIADLQAQIAELKMQLAKKEEELQAALARLDDEIA---QKNNALKKIRELEGHISDL 1123 Query: 606 TAKGEAEKTAILISILH--EVHIQIHQIESQ 634 ++E+ A + ++ ++ ++++ Sbjct: 1124 QEDLDSERAARNKAEKQKRDLGEELEALKTE 1154 >gi|157892|gb|AAA28687.1| myosin heavy chain [Drosophila melanogaster] Length = 1962 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|42783724|ref|NP_980971.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus ATCC 10987] gi|81699646|sp|Q72ZJ0|MUTS2_BACC1 RecName: Full=MutS2 protein gi|42739654|gb|AAS43579.1| MutS2 family protein [Bacillus cereus ATCC 10987] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|322376596|ref|ZP_08051089.1| hypothetical protein HMPREF0851_00384 [Streptococcus sp. M334] gi|321282403|gb|EFX59410.1| hypothetical protein HMPREF0851_00384 [Streptococcus sp. M334] Length = 151 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 34/133 (25%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I++ I I ++ N + + P HD SF + Sbjct: 3 IEECKQ-ISILDV-----------ANRLGISFKQVSSSVYEHPEHD----SFRIFSNTNT 46 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ------T 115 + FS ++GD + F+ + G SF E++ L+ + ++ + + Sbjct: 47 FKWFSRDIQGDVIDFVRLVKGLSFKETLAFLSE------EPFQKEAVQENRERPFNYPLK 100 Query: 116 DLIRLIEVATDFF 128 + ++ Sbjct: 101 RIEDSNCSLARYY 113 >gi|296224481|ref|XP_002807607.1| PREDICTED: LOW QUALITY PROTEIN: rho-associated protein kinase 2-like [Callithrix jacchus] Length = 1703 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 100/288 (34%), Gaps = 39/288 (13%) Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY--------SQ 426 + E + E + E + + ++DQ Y + Sbjct: 1137 MSEKQLKQENNHLLEMKMNLEKQNAELRKERQDADGQMKELQDQLEAEQYFSTLYKTQVR 1196 Query: 427 AIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSK 478 +++ +L + Q+ E K S++L +S + L K Sbjct: 1197 ELKEECEEKTKLGKELQQKKQELQDERDSLAAQLEITLTKADSEQLARSIAEEQYSDLEK 1256 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + ++E + + H L E+ +A + + L S + + E EE++ Sbjct: 1257 EKIMKELEIKEMMARHKQELTEKDATIASLE---ETNRTLTSDVANLANE-----KEELN 1308 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA----LYKRFRLLSR- 593 +L + E L +L + A A E ++ R QA+ + R + R Sbjct: 1309 NKLKD--VQEQLSRLKDEEISAAAIKAQFEKQLLTERTLKTQAVNKLAEIMNRKEPVKRG 1366 Query: 594 -----QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++E E + + K E EK L + + +++++++Q A Sbjct: 1367 NDTDVRRKEKENRKLHMELKSEREK---LTQQMIKYQKELNEMQAQIA 1411 >gi|260219645|emb|CBA26490.1| Chaperone protein clpB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 863 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 3/146 (2%) Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 ++H I + I + K+ L S I ++ + Sbjct: 374 LSHRYITDRFLPD-KAIDLIDEAASKIKIELDSKPEVMDKLDRRLIQLQIEREAVKKEKD 432 Query: 552 QL-DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + ++ + + I D+ + ++ A + + + +++ QI +T KG+ Sbjct: 433 EASLKRFELINEEINSLQKEIADLDEIWKAEKATAQGSAQVREEIDKLRTQIESLTRKGD 492 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQE 635 K A L L E+ ++ + + QE Sbjct: 493 LAKVAELQYGKLPELEKRLKEAQDQE 518 >gi|253576949|ref|ZP_04854273.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843680|gb|EES71704.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 36/182 (19%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPS------FHCNDSKGFYYCFSCH 68 I ++ Q + ++ + + CPF H++ P N + C+ C Sbjct: 4 DILDVADQN-GLIIKPSSQSREEVLCKCPFCHEDSKPGKKRRYYLSLNTKDQVFKCWFCG 62 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 G L F+S L G P+ + +++ + +++ A Sbjct: 63 ESGGVLRFISLLEGV---------------------PEEQVRQRYRKR--KIVHPA---- 95 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + K L + + + + Y S L E + +E + L Sbjct: 96 -ERLSRNQRKLLRQHTGGKEPNWKLMRERDFAYYMRSMDLLWEQWNEFLETERQGAYLWL 154 Query: 189 LI 190 +I Sbjct: 155 II 156 >gi|158285519|ref|XP_001687903.1| AGAP007523-PA [Anopheles gambiae str. PEST] gi|157020031|gb|EDO64552.1| AGAP007523-PA [Anopheles gambiae str. PEST] Length = 1974 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 33/280 (11%), Positives = 94/280 (33%), Gaps = 6/280 (2%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + EK + ++ E E + ELE +++ + I++++ Sbjct: 914 QEYEKKYQQAMEEKTHLAEQLQAEIELCAEAEEGRARLVARKQELEELMQDLESRIEEEE 973 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + +LQ Q + +K + Q + M+ + + Sbjct: 974 ERVNALTSEKKKLQINIQDLEEQLEEEEAARQKLQLEKVQLDAKLKKMEEDVALIEDQNH 1033 Query: 480 PSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLP 534 ++E LL N + + +E LA ++ + + +L L D +++ Sbjct: 1034 KLVKEKKLLEERANDLSQTLAEEEEKAKHLAKLKVKHESTIAELEERLLKDHQQRQEADR 1093 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + E + + Q+ + E + + A + R+ Sbjct: 1094 SKRKIETEVADLKEQINERRMQIEEMQQQLVKREEELAQTLVRIDEESAAKAAAQKTQRE 1153 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E +I + + ++ +++ ++ ++++ Sbjct: 1154 LESQLAEIQEDLEAEKLARSKAE-KQKRDLNEELEALKNE 1192 >gi|49478686|ref|YP_038600.1| recombination and DNA strand exchange inhibitor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|81696639|sp|Q6HCX6|MUTS2_BACHK RecName: Full=MutS2 protein gi|49330242|gb|AAT60888.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|28574239|ref|NP_523587.4| myosin heavy chain, isoform H [Drosophila melanogaster] gi|22946667|gb|AAN10966.1| myosin heavy chain, isoform H [Drosophila melanogaster] Length = 1962 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584714|ref|NP_724009.1| myosin heavy chain, isoform L [Drosophila melanogaster] gi|22946670|gb|AAN10969.1| myosin heavy chain, isoform L [Drosophila melanogaster] Length = 1936 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584716|ref|NP_724010.1| myosin heavy chain, isoform M [Drosophila melanogaster] gi|22946671|gb|AAN10970.1| myosin heavy chain, isoform M [Drosophila melanogaster] Length = 1936 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|24584704|ref|NP_724005.1| myosin heavy chain, isoform A [Drosophila melanogaster] gi|22946665|gb|AAN10964.1| myosin heavy chain, isoform A [Drosophila melanogaster] Length = 1962 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|87312249|ref|ZP_01094349.1| hypothetical protein DSM3645_06299 [Blastopirellula marina DSM 3645] gi|87285025|gb|EAQ76959.1| hypothetical protein DSM3645_06299 [Blastopirellula marina DSM 3645] Length = 548 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 5/159 (3%) Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 TL+ + + ++ ++ + L L ++I L + + Sbjct: 234 TLLELNDLAKALKDKVKELGMS----EMLKDKL-EALKNISKGPADKIADALKDGDLKKA 288 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 ++++ + + E +Q + A + + ++ K ++++QI Q A G Sbjct: 289 IEEMKNLQQKMANGQLSKEEQQALGQQLKEMADKMKQMADAQAKAKADLKQQIEQQKAAG 348 Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 E L L E+ +Q Q+ E M E G+ + ++ Sbjct: 349 NQEAAEKLQRQLDEMEMQNEQMGRMEQMAEQLGEAAEQM 387 >gi|306815727|ref|ZP_07449876.1| replicative DNA helicase, putative [Escherichia coli NC101] gi|305851389|gb|EFM51844.1| replicative DNA helicase, putative [Escherichia coli NC101] Length = 455 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E L+ + + + ++ + V + + + L Sbjct: 12 AEQAVLGGLMLENERWDEVVLMLSPDDFYVAQHRAIFRAMSELAVNGQPLDLITLSEHLE 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +G +LD A L + Y + R L + + Sbjct: 72 HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 125 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 A + L + E EA + Sbjct: 126 A-APNATSRDVLDTAERRLFALAQNRTLRERTEASL 160 >gi|196034369|ref|ZP_03101778.1| MutS2 family protein [Bacillus cereus W] gi|218905777|ref|YP_002453611.1| MutS2 family protein [Bacillus cereus AH820] gi|228929599|ref|ZP_04092617.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|226723044|sp|B7JR57|MUTS2_BACC0 RecName: Full=MutS2 protein gi|195992911|gb|EDX56870.1| MutS2 family protein [Bacillus cereus W] gi|218535887|gb|ACK88285.1| MutS2 family protein [Bacillus cereus AH820] gi|228829986|gb|EEM75605.1| hypothetical protein bthur0010_42830 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|47206494|emb|CAF92339.1| unnamed protein product [Tetraodon nigroviridis] Length = 1477 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 22/271 (8%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + + E E ++ ELE L + D++ R + ++QQ Sbjct: 345 QEQLQAETELFAEAEEMRVRLAAKKQELEEILHEMEARLDDEEERAQALLLDKKKMQQQM 404 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 Q+ +K + + ++ ++ + L+E L+ Sbjct: 405 QELEEHLEEEEDARQKLQLEKVTCEGKIKKLEDEILVMEDHNNKLLKERKLME------D 458 Query: 497 ILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQKYFLPEEIHQRLCERG 545 + + LA+ + L KL + L + ++ + Sbjct: 459 RIADISTNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKCRQELDKAKRKLEAESND 518 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 E + L Q+ + A E + + + +A + ++ E+E I+ + Sbjct: 519 LQEQIADLQAQIAELKAQLAKKEEELQNALARLEDEMA---QKNNALKKIRELEGHISDL 575 Query: 606 TAKGEAEKTAILISI--LHEVHIQIHQIESQ 634 ++E+ A + ++ ++ ++S+ Sbjct: 576 QEDLDSERAARNKAEKIKRDLGEELEALKSE 606 Score = 39.5 bits (90), Expect = 1.7, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 92/283 (32%), Gaps = 18/283 (6%) Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 + + ++ + ++R+ + R +++ +L ++ ++D++ + + Sbjct: 1042 QAAEDAKLRLEVNMQALKAQFERDLQGRDEMGEEKKRQLIKQVRELETELEDERKQRAQA 1101 Query: 426 QAIRDRL--------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 A + +L Q+ + K A+ +D + + + Sbjct: 1102 TAAKKKLETDIKDLEGQIETASKGRDEAIKQLRKLQAQMKDFQRELDDAHAAREEVLSAA 1161 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K+ + +L L+ LQE + + Q L S LF + Sbjct: 1162 KESEKKAKSLEAELMQ----LQEVTWLIPNTASAGGTRQTLRSGLFFFLQDLAAAERARK 1217 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSR 593 + L EA I + + ++ L R R S+ Sbjct: 1218 QAEAERDELADELASNASGKSALADEKRRLEARIAQLEEELEEEQGNMELLNDRLRKSSQ 1277 Query: 594 QKEEIEKQIA--QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q +++ ++ + T++ L E+ ++ ++E+Q Sbjct: 1278 QVDQLNNELQTERSTSQKNESARQQLERQNKELKAKLQEMENQ 1320 >gi|157156805|ref|YP_001464372.1| DnaB family helicase [Escherichia coli E24377A] gi|157078835|gb|ABV18543.1| helicase, DnaB family [Escherichia coli E24377A] Length = 455 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 42/156 (26%), Gaps = 7/156 (4%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L L+ E L+ + + + ++ + V + + + L Sbjct: 12 AEQAVLGGLMLENERWDEVVLMLSPDDFYVAQHRAIFRAMSELAVNGQPLDLITLSEHLE 71 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +G +LD A L + Y + R L + + Sbjct: 72 HQG------RLDVLGGFAYLAELSKNTPSAANIMAYAGIVVEKSVLRQLQATGNTLIADV 125 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 A + L + E EA + Sbjct: 126 A-APNATSRDVLDTAERRLFALAQNRTLRERTEASL 160 >gi|302840018|ref|XP_002951565.1| hypothetical protein VOLCADRAFT_92191 [Volvox carteri f. nagariensis] gi|300263174|gb|EFJ47376.1| hypothetical protein VOLCADRAFT_92191 [Volvox carteri f. nagariensis] Length = 2748 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 80/284 (28%), Gaps = 12/284 (4%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 A ES + + E + L+ +K ++ Sbjct: 669 QTADAGQAHAMASSRWESDQHLQEQVREVEERLKAREAELDERLKAREAELEGRLKARE- 727 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ------SSLVKG 474 + ++ R +L ++ + E + K+N + + S Sbjct: 728 -AELDERLKAREAELEEQVMRERAANDSLAKQNRALYSTLEETLSAAEHEVHDTSQKEVS 786 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + LRE AL A+ + + + L VE Sbjct: 787 QLKEDLELRERALSAVQAEFSALRRRHEEMSTAAEAARRDN-ALRDGRLRREVEVATQDA 845 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + +L + +QL + + AT ++ A L + L R+ Sbjct: 846 AILAAQLTK--LQREHQQLHSRKAEKDRQLATLAKRADAQQEQLTAAERLAQEQAALVRE 903 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 E + A + A + Q+ Q+E + A++ Sbjct: 904 LESRATLLRNRNAALDRAVAAEKEAR-QAAQEQVRQMEEEIALL 946 >gi|256841562|ref|ZP_05547069.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737405|gb|EEU50732.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 342 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 23/186 (12%), Positives = 44/186 (23%), Gaps = 31/186 (16%) Query: 43 CPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA------ 96 P + TPS + + F G + + GC+ ++ RL Sbjct: 36 SPLRQDDTPSLKVDYGVNLWCDFGTGEGGSLIDLVMKQYGCNAYGAISRLEQGYYSGNTF 95 Query: 97 ---GVPLPVVDPKIEKKEKIQTDLIRLI---------------------EVATDFFHHSL 132 G + +P ++ K I + EVA D+ Sbjct: 96 SFQGKNITERNP-AREERKRPASPIEIRKIQPLQNPALINYLKSRGIAPEVAADYVQEMY 154 Query: 133 KNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDG 192 K L + + + + R K + E + Sbjct: 155 YRVNGKPLFALAFKNDAGGYELRNPGYKGCTSPKDITRIQFAGKRNDACFVFEGFMDYLS 214 Query: 193 DNSATS 198 + Sbjct: 215 FLTIRH 220 >gi|254292465|ref|YP_003058488.1| ABC transporter [Hirschia baltica ATCC 49814] gi|254040996|gb|ACT57791.1| ABC-type uncharacterized transport system involved in gliding motility auxiliary component protein [Hirschia baltica ATCC 49814] Length = 628 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 55/184 (29%), Gaps = 31/184 (16%) Query: 487 LLLTLINHPAILQEQYQE---------LADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +L L+N P + ++ ++D ++ S Sbjct: 423 VLAALVNDPETQHQHLEKSVQSVDIILISDTDIFDDTF------YVSPNGGAPVADNAVF 476 Query: 538 -HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + L L + A + + + Y++ L R + + Sbjct: 477 VMNALDNLSGSDALVNLRSRAPSARPMTRVNKMRDEARERLYEEQEILQLRLKQTEARLN 536 Query: 597 EIEKQ------IAQVTA--KGEAEKTAILIS---ILHEVHIQIHQIESQ-EAMIEGFGKM 644 E+ ++ + + + L E+ ++ ++E + A I+ + Sbjct: 537 ELRAAGAGGGLLSHSGDFDEVDQAEAEELTRFRGEAIEIRQRLREVEREFRADID---LL 593 Query: 645 SGRL 648 SGRL Sbjct: 594 SGRL 597 >gi|159125506|gb|EDP50623.1| DNA repair protein Rad50 [Aspergillus fumigatus A1163] Length = 1303 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 30/280 (10%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-------QKLRYYYSQAIR 429 ++ W R ++ + E + + +N +++ + + +A+ Sbjct: 717 RAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQLENHDKIVSEKIEKKRDVEALS 776 Query: 430 D------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKK 479 R + + ++ + N R + + + ++ +K LSK Sbjct: 777 KTVNTIVRYESEIRTIRSQIQDLSSNQQDNTATRTLEDIQEEIAGIGDKTRALKKTLSKL 836 Query: 480 PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + RE A T +N+ + L++ +L ++++ L + + ++ E I Sbjct: 837 INDREQA--RTEMNNLELQLRDARSKLDNVKFQLERKSDLLARI-EEYKNFNNQQREAIT 893 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +R EL +L + S EA +++QG Q RQ + Sbjct: 894 KA--DRDIEELTPELLKYQAQYDDISQRVEAREREMQQGISQLSERI-------RQLDLA 944 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 ++I +G + L + +I Q+E+++A I Sbjct: 945 TEEIDSYNERGGPSQLERSRRELQTIEAEISQLEAEQANI 984 >gi|157118641|ref|XP_001659192.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108883254|gb|EAT47479.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] Length = 1888 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 87/257 (33%), Gaps = 6/257 (2%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 ++ E E + ELE +++ I++++ R + + +LQ Q + Sbjct: 824 EIELCAEAEEGRARLAARKQELEELMQDLEARIEEEEERVNALSSEKKKLQINIQDLEEQ 883 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + Q + M+ + + + L+E +L N + + Sbjct: 884 LEEEEAARQKLQLEKVQLDAKLKKMEEDVALTEDQNQKLLKEKKILEERANDLSQTLAEE 943 Query: 503 QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +E LA ++ + + +L L D +++ + E + + Q+ Sbjct: 944 EEKAKHLAKLKAKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRMQI 1003 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + E + + A + R+ E +I + + ++ Sbjct: 1004 EEMQQQLIKREEELAQTLVRIDEESAAKAAAQKAQRELESQLAEIQEDLEAEKLARSKAE 1063 Query: 618 ISILHEVHIQIHQIESQ 634 +++ ++ ++++ Sbjct: 1064 -KQKRDLNEELEALKNE 1079 >gi|52140954|ref|YP_085875.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus E33L] gi|196042123|ref|ZP_03109407.1| MutS2 family protein [Bacillus cereus NVH0597-99] gi|228948276|ref|ZP_04110559.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124117|ref|ZP_04253309.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201] gi|81685978|sp|Q633P2|MUTS2_BACCZ RecName: Full=MutS2 protein gi|51974423|gb|AAU15973.1| DNA mismatch repair protein, MutS family [Bacillus cereus E33L] gi|196027059|gb|EDX65682.1| MutS2 family protein [Bacillus cereus NVH0597-99] gi|228659419|gb|EEL15067.1| hypothetical protein bcere0016_44020 [Bacillus cereus 95/8201] gi|228811263|gb|EEM57601.1| hypothetical protein bthur0007_44020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 786 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|269926920|ref|YP_003323543.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798] gi|269790580|gb|ACZ42721.1| replicative DNA helicase [Thermobaculum terrenum ATCC BAA-798] Length = 446 Score = 46.0 bits (107), Expect = 0.018, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E +LL +L+ + + L + +++ + + ++ Sbjct: 7 KLPPHSIEAEQSLLGSLLLDRDAIIKVAPFLRPEDFYREAHARIYEAILDLYNRREPPDL 66 Query: 535 EEIHQRLCERGFGELL 550 IH+ L RG+ E + Sbjct: 67 VTIHEELSRRGYAEEV 82 >gi|327284986|ref|XP_003227216.1| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2 [Anolis carolinensis] Length = 864 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 37/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + + K+ + + K+ + Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMALENKLKTEMDEHRLRLDKDL------ETQ 503 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479 R ++ + L++ E KK +H + Q+ S + +K Sbjct: 504 RNNFAAEMEKLLKKHQAAMEKEAKVMANEEKKFQQHIQGQQKKELNSFLESQKREYKLRK 563 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+E+ L + + + L + L + + + Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591 RL E +L ++ +T + + ++ Q L + + L Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670 Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R+ E+E+++ + + E+ L + E + + +++E IE Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728 Query: 640 GFGKMSGRL 648 F S RL Sbjct: 729 AFDSESMRL 737 >gi|326511825|dbj|BAJ92057.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 914 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 4/131 (3%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + R + Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEREKDK-ASKARLVDVRKEL 451 Query: 567 TEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623 + ++ Y++ R L +++EE++ + + + + + A L L E Sbjct: 452 EDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMDLARVADLRYGALQE 511 Query: 624 VHIQIHQIESQ 634 V I ++E + Sbjct: 512 VDAAIARLEGE 522 >gi|302503244|ref|XP_003013582.1| hypothetical protein ARB_00029 [Arthroderma benhamiae CBS 112371] gi|291177147|gb|EFE32942.1| hypothetical protein ARB_00029 [Arthroderma benhamiae CBS 112371] Length = 1120 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 58/148 (39%), Gaps = 16/148 (10%) Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 P +L + A+ L++L L + E + ++ Q E+ + +LL++L+ Sbjct: 241 PQMLDDGEAAGAEFE---GSLKQLAERLKALQQENESLDK-QLSQ--EEKEYEQLLRELE 294 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALY--------KRFRLLSRQKEEIEKQIAQVT 606 Q D + D+R+ + ++ KR +LL + +E E++ + Sbjct: 295 DQRNDLKQRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQ--KEAERKKRRED 352 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634 E+ + L + + +I + Sbjct: 353 IVRWNEREIEIKDELANLQKEKTRIGEE 380 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 71/220 (32%), Gaps = 6/220 (2%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 + L Y + E SG K++ R G S + S + + Sbjct: 186 RGPPLIQAYVPKAAAIVSPSAPVMSREQSGGTAQAKRSGGGRRSIG-STSVQDSGVPQML 244 Query: 476 LSKKPSLREAA-LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + + E L L LQ++ + L + E + + L + +Q+ L Sbjct: 245 DDGEAAGAEFEGSLKQLAERLKALQQENESLDK-QLSQEEKE--YEQLLRELEDQRNDLK 301 Query: 535 EEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + + ++ G + + +L+ R + E + ++ R+ Sbjct: 302 QRVKEKDDATGDLRKHINKLESINRTVQNEKSKREKLLQQKEAERKKRREDIVRWNEREI 361 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++ + + + E T L ++ + +++ Sbjct: 362 EIKDELANLQKEKTRIGEESTTKLEEYRRKITEEQGEMKQ 401 >gi|301778054|ref|XP_002924447.1| PREDICTED: TATA element modulatory factor-like [Ailuropoda melanoleuca] gi|281342539|gb|EFB18123.1| hypothetical protein PANDA_013785 [Ailuropoda melanoleuca] Length = 1089 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 G + Q KL+ +E L ++ + ++ A + EL L Sbjct: 609 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHK 668 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + + + EL L++ +A T + D+R Q+ Sbjct: 669 A---NAAKDSEAQEAALRREIKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 723 Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A A ++ L + E+++++ + + E + + S + QI +++ Sbjct: 724 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 777 >gi|281365095|ref|NP_001162990.1| myosin heavy chain, isoform N [Drosophila melanogaster] gi|272407068|gb|ACZ94276.1| myosin heavy chain, isoform N [Drosophila melanogaster] Length = 1949 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|229164657|ref|ZP_04292529.1| hypothetical protein bcere0009_53770 [Bacillus cereus R309803] gi|228618811|gb|EEK75765.1| hypothetical protein bcere0009_53770 [Bacillus cereus R309803] Length = 738 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 11/82 (13%) Query: 42 CCPFHDEKTPSFH---CNDSKGFYYCFS--CHVKG-DHLSFLSAL-----LGCSFIESVQ 90 CC FH++ PS D K Y+C+S C + + +F ++V Sbjct: 366 CCHFHNDVNPSATLYEMRDGKKMYFCYSSNCAKQYRSVIDVAMETLSTPEQHVTFSQTVD 425 Query: 91 RLAAIAGVPLPVVDPKIEKKEK 112 LA GV L + + EK ++ Sbjct: 426 FLAQKLGVTLDMDAYQKEKYQE 447 >gi|254493365|ref|ZP_05106536.1| replicative DNA helicase [Neisseria gonorrhoeae 1291] gi|226512405|gb|EEH61750.1| replicative DNA helicase [Neisseria gonorrhoeae 1291] Length = 468 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEDREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|83589007|ref|YP_429016.1| primary replicative DNA helicase [Moorella thermoacetica ATCC 39073] gi|83571921|gb|ABC18473.1| primary replicative DNA helicase [Moorella thermoacetica ATCC 39073] Length = 444 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 12/150 (8%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E ++L ++ L + L + + ++ + + Sbjct: 7 RVPPQSIEAEQSVLGAIMLDREALYAVLETLKVDDFYREAHRMIYRAILDLNERGEAVDL 66 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L RG +L+ A L S T + V Y + +A R L + Sbjct: 67 LTVTEELRRRG------ELEAAGGVAYLTSLTGDVPSVANAGYYARLVAEKAALRSLVQ- 119 Query: 595 KEEIEKQIAQV--TAKGEAEKTAILISILH 622 QI ++ + G ++ L Sbjct: 120 ---AASQITEMAFSESGSVDQILDEAERLI 146 >gi|312379743|gb|EFR25924.1| hypothetical protein AND_08308 [Anopheles darlingi] Length = 1885 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 29/257 (11%), Positives = 85/257 (33%), Gaps = 6/257 (2%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 ++ E E + ELE +++ + I++++ R + +LQ Q + Sbjct: 818 EIELCAEAEEGRARLSARKQELEELMQDLESRIEEEEDRVNTLTNEKKKLQVNIQDLEEQ 877 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + Q + ++ + ++E LL N + + Sbjct: 878 LEEEETARQKLQLEKVQLDAKLKKLEEDTALIEDQNHKLVKEKKLLEERANDLSQTLAEE 937 Query: 503 QE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQV 557 +E LA ++ + + +L L D +++ + E + + Q+ Sbjct: 938 EEKAKHLAKLKVKHESTIAELEERLLKDHQQRQESDRSKRKIETEVADLKEQINERRIQI 997 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 + E + V + + R+ E +I + + ++ Sbjct: 998 EEMQQQLVKREEELAQVMVRIDEESTAKAAAQKTQRELESQLAEIQEDLEAEKIARSKAE 1057 Query: 618 ISILHEVHIQIHQIESQ 634 +++ ++ ++++ Sbjct: 1058 -KQKRDLNEELEALKNE 1073 Score = 38.7 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 79/261 (30%), Gaps = 18/261 (6%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 +E + RS D E+E K I+ + + QA DRL + +K +E Sbjct: 1293 QELKKRSDEESDMAKEMEESKKKMNKDIETLQRQIQELQATNDRLDKSKKKIQSELEDAT 1352 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA-----ILQEQY 502 + Q+ L + K + +E + +E Sbjct: 1353 IELETQRTKVLDLEKKQKNFDKVLAEEKAISEQHAQERDAAEREAREKETKVLSLTRELD 1412 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 + I + + L + L Q +R L +L Q Sbjct: 1413 EAFEKIDELEQKRKALQNELDELANTQGTADKNVHELEKAKRALESQLAELKAQ------ 1466 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKE---EIEKQIAQVTAKGEAEKTAILIS 619 E D++ L L + L Q E + +++ ++ +G + L + Sbjct: 1467 ----NEELEDDLQLTEDAKLRLEVNMQALRAQFERDIQAKEEQSEEKRRGLVKALRDLEA 1522 Query: 620 ILHEVHIQIHQIESQEAMIEG 640 L E Q + + +EG Sbjct: 1523 ELDEERKQRAAAVAAKKKLEG 1543 >gi|257438300|ref|ZP_05614055.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] gi|257199262|gb|EEU97546.1| toprim domain protein [Faecalibacterium prausnitzii A2-165] Length = 636 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 43/142 (30%), Gaps = 30/142 (21%) Query: 3 YPRDFIKDLLIHIPISNLI-GQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 Y ++ I + + + Q R HD S +K Sbjct: 6 YTQEQIDRA-NQADLVSFLQSQGEQLTRAGNEYRWKR-------HD----SLTVRGNK-- 51 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL---------------AAIAGVPLPVVDPK 106 +Y S G + F+ G SF E+V+ L A+++ LP + Sbjct: 52 WYRHSQSKGGGPVDFVMEFFGKSFTEAVELLTGEKGAAPPPDRPCPASLSDFRLPPPNSD 111 Query: 107 IEKKEKIQTDLIRLIEVATDFF 128 T R+ E T FF Sbjct: 112 NRTARNYLTTARRIDEDVTGFF 133 >gi|260795120|ref|XP_002592554.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae] gi|229277775|gb|EEN48565.1| hypothetical protein BRAFLDRAFT_118903 [Branchiostoma floridae] Length = 3563 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 97/316 (30%), Gaps = 19/316 (6%) Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + + L D +S + ++ + LV++ Sbjct: 1838 QQYMLSEAESQLQTTNERLSSLQKEHDDLLDQNSKLHRLYHDKLTEVEQLNSDLVEVRGM 1897 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRY--YYSQAIRDRLQQLFQKYITEHSG 445 E + + E+ + I++ +LR + +R R+++L E Sbjct: 1898 AEINSAKLQSNISILNEEVEALKSKHKIQEGQLRDRESEIEELRRRIREL------EAEN 1951 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 K R+ + + + + + E L I Q L Sbjct: 1952 EALRKKIADLRRELDDQTANMERYQREARDANSEVERLEQLLAQ---RESDIRGLQSDLL 2008 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + N + K+ + + ++ ++ L E +L +A + Sbjct: 2009 SARDEVN--ITKMKTTEITRAESEQLSSQMKLSNDLQ-MALNEKQGRLGAMEAEARKLRS 2065 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 E + D + + + L + R + + + +++ Q + + L L ++ Sbjct: 2066 DLEISRRDNEEKFAEINGLKNKTRDMESELSGLNQKLYQ-----DKQANRSLQEKLDDLQ 2120 Query: 626 IQIHQIESQEAMIEGF 641 +++++ + EG+ Sbjct: 2121 FEMNRLRRELQEKEGY 2136 Score = 39.1 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 24/282 (8%), Positives = 88/282 (31%), Gaps = 36/282 (12%) Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS 425 K + + + ++ ++ + ++ E+ + D R Sbjct: 2131 QEKEGYITSMETKMSNLESSVVGQSSEKDGKIQEQMEEIRRLRMKIESLNDDMTERERKM 2190 Query: 426 QAIRDRLQQL-------FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + ++L F + + + + ++S + K Sbjct: 2191 LDLAREKEELQGQYEFYFSETSKLQTQVTEIQTVQTQMGGSTEALEDELESLRRRLKSDN 2250 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEI 537 + + +EA E ++ + ++ + N +KL + Q E++ Sbjct: 2251 EHANQEA-------------FELHRRITELELERNTATEKLKHM--EVNMSQGSGEVEKL 2295 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 Q+L +L ++ + + ++ Q L+ + +LLS Sbjct: 2296 RQQLRRAEQDSSNTELRYNEMHKVNERLRSDMDDILHQRDIAQRLSKEQEAKLLS----- 2350 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + +++ + + + ++ ++ ++++ +++ Sbjct: 2351 LSQRLRHLE--------EQTRTEILDLQSKLRNLQNEYQLLD 2384 >gi|195342751|ref|XP_002037962.1| GM18554 [Drosophila sechellia] gi|194132812|gb|EDW54380.1| GM18554 [Drosophila sechellia] Length = 622 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 72/214 (33%), Gaps = 17/214 (7%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + L++L + ++ D + Q L + K ++ + Sbjct: 178 RKKLNDDLNEALKELERLRKQFEETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 237 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + T E L+ + +L++ L + + EQ +EI Sbjct: 238 INESRRIKQT------EYSEIDGRLSSE--YDAKLKQSLQELRAQYEEQMLINRDEIQAL 289 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ++ + R A S +T +I ++R + L L + ++ Sbjct: 290 YEDK--------IQRLQEAAARTSNSTHKSIEELRSTRVRIEGLNAHIHDLEQANADLNS 341 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +I ++ + + ++ + + ++ ++ + Sbjct: 342 RIRELERQLDNDR-ERHGQEIDLLEKELVRLREE 374 >gi|24584712|ref|NP_724008.1| myosin heavy chain, isoform K [Drosophila melanogaster] gi|22946669|gb|AAN10968.1| myosin heavy chain, isoform K [Drosophila melanogaster] Length = 1936 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 28/260 (10%), Positives = 82/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1572 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1631 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1632 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1684 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI----HQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1685 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1744 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + + L Sbjct: 1745 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1804 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++E++ Sbjct: 1805 KGGKKAIQKLEQRVRELENE 1824 >gi|163848669|ref|YP_001636713.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl] gi|222526605|ref|YP_002571076.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl] gi|163669958|gb|ABY36324.1| ATP-dependent chaperone ClpB [Chloroflexus aurantiacus J-10-fl] gi|222450484|gb|ACM54750.1| ATP-dependent chaperone ClpB [Chloroflexus sp. Y-400-fl] Length = 861 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 69/204 (33%), Gaps = 8/204 (3%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R ++ + +++ + + + + AL+ + Sbjct: 321 YRKHIEKDAALERRFQPVMVDPPSVEDTISILRGLKERYETHHGVRITDGALIAAAMLSD 380 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + SD E + + K+ D+ Sbjct: 381 RYISDRFLPDKAIDLIDEAAARLRMEITSDPQELDDLKRRIMQLEIEREALR---KEKDQ 437 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI----EKQIAQVTAKGEA 611 ++ AN+ + R + + ++ +Q +E I Q + + Sbjct: 438 ASKERLEKLEQELANLREQRSALEAQIQRERQELERIQQLKEKIEQTRAAIEQAQRQYDY 497 Query: 612 EKTAIL-ISILHEVHIQIHQIESQ 634 K A L L + ++ E+Q Sbjct: 498 NKAAELQYGTLVSLERELQAAEAQ 521 >gi|330934858|ref|XP_003304741.1| hypothetical protein PTT_17390 [Pyrenophora teres f. teres 0-1] gi|311318543|gb|EFQ87163.1| hypothetical protein PTT_17390 [Pyrenophora teres f. teres 0-1] Length = 2221 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 23/286 (8%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 +R ++A +L ES +R+ E + + D Sbjct: 865 DKLRMDLQSAERRLEDESAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADST- 923 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR---LMQSSLVKGKLS 477 Q + R++ L + T + +Q S+ + Q S +K KL Sbjct: 924 ----RQQLEQRIKDLQNQLQTAEERVAALQPRPDSTEEQDSASREEELIAQVSELKRKLE 979 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +K EA + + I QE L ++L L + ++K ++ Sbjct: 980 RKEEDLEA-VTAQIAGFQDIAQEAENRLQTF---VEAHERLQEQL-NLAEQEKDATINDL 1034 Query: 538 HQRLCE---------RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 QR+ + EL Q ++ T EA I+ ++ A + Sbjct: 1035 QQRVNDISSELATSSTELTELRGQHEQDTLVLKQEKETLEAEIIRLQNDMADYKAEAENQ 1094 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + EI ++ AQ + E +K A + L EV Q +++++Q Sbjct: 1095 TQYVKTQAEIAER-AQKDYEHEFQKHAESMQKLREVRDQYNELQTQ 1139 Score = 38.7 bits (88), Expect = 3.3, Method: Composition-based stats. Identities = 22/246 (8%), Positives = 75/246 (30%), Gaps = 34/246 (13%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + ++ L ++Y + + + ++ +QS + + Sbjct: 755 IKLLQSEKDSLQERYNKVQATMAQQDDNLVKATQNAAEAEARLQSLQGEMVQLRASQQMS 814 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A + L L + L+ + L+ ++ + +++ L Sbjct: 815 ATIEARLKERNQELMTERDRLSSMVSSIQSLRNEAELATAESRRELQNSVDKLRMDLQSA 874 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR-----------LLSR 593 ++L+ + + + + ++ ++ + L + Sbjct: 875 E-----RRLEDESAEHKRATQQRDYERMEAQRRIDDLITARNSAEVKAATADSTRQQLEQ 929 Query: 594 QKEEIEKQIAQVTA--------------KGEAEKTAILISILHEVHIQIHQ----IESQE 635 + ++++ Q+ + A + LI+ + E+ ++ + +E+ Sbjct: 930 RIKDLQNQLQTAEERVAALQPRPDSTEEQDSASREEELIAQVSELKRKLERKEEDLEAVT 989 Query: 636 AMIEGF 641 A I GF Sbjct: 990 AQIAGF 995 >gi|301056059|ref|YP_003794270.1| MutS family DNA mismatch repair protein [Bacillus anthracis CI] gi|300378228|gb|ADK07132.1| DNA mismatch repair protein, MutS family [Bacillus cereus biovar anthracis str. CI] Length = 786 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|255073513|ref|XP_002500431.1| kinesin-like protein [Micromonas sp. RCC299] gi|226515694|gb|ACO61689.1| kinesin-like protein [Micromonas sp. RCC299] Length = 1309 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 70/216 (32%), Gaps = 15/216 (6%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 LQQ + + + + ++ + G + + K + L E Sbjct: 381 DDAARGLQQRLRSRLLQINDARETYRDQIQSTGADGIDPNNIGLQMAKLHELEGQLLNER 440 Query: 486 ALLLTLINHPAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L+ L E+ Q L + N E ++L L + EI + L E Sbjct: 441 GDKAELLAEKEALIERLQRLNGMDKANLAEKEELQKALIA-----SEEDRLEIARALVEA 495 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L + L + V + +A+A R + + E++ + Sbjct: 496 QLEANEAALQAEKTRHEL--------VERVHELEARAIASEVRVKGAEQSYGELQNKAGS 547 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + + + K L E+ ++ +I ++ A + G Sbjct: 548 LNVENQRIK-EELDQTRQELEKELKEIRTEHAEVSG 582 >gi|254521524|ref|ZP_05133579.1| putative chromosome segregation SMC protein [Stenotrophomonas sp. SKA14] gi|219719115|gb|EED37640.1| putative chromosome segregation SMC protein [Stenotrophomonas sp. SKA14] Length = 609 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 42/369 (11%), Positives = 106/369 (28%), Gaps = 25/369 (6%) Query: 292 QNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFV 351 + + L L + LL ++ + + A + Sbjct: 99 EMPATGLSPLLNVIEENLLTPGVRDLIADKKQEHQAWQIALALLSRDQECRFDHVLEWRS 158 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK----------RETENRSFNTPDER 401 LS E P + + + ++ ++ + + R E + E Sbjct: 159 SLSDSESPARGLNRTERLETLRALLNAIDPSEQTLRIDIAAMSESSRSREQEIGHRAWEI 218 Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 +L L + D+ + I R Q T+ G ++ + + Sbjct: 219 RKLRKQLLEVLGVTDDELSQGTLGVEILRRAAQKRLAAETKSDGASATSDLDSVRQAHES 278 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ--EQYQELADIRYDNNELQKLW 519 + + G+ + E A+ +P + ++ + + + L Sbjct: 279 AQSEVARVQANIGRQEAVIPVIERAISAIKGEYPTLAYSLKEAENYPCPICEVPIDRVLA 338 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVR-- 575 S + K E RL + + ++L D Sbjct: 339 S---QCGLSHKVPDLEACKARLENGRKALKDEQERLKSAKSLLKQLRPELALAKQDATRR 395 Query: 576 -QGYQQALALYKR----FRLLSRQKEEIEKQIAQVTAKGEAE-KTAILISILHEVHIQIH 629 + YQ L L ++ + + +++E+ + + E + + + +V +I Sbjct: 396 GEHYQNLLKLREQRDGAWYAARKAVDDVERLASLFEQQQTTEARLDRHQNEIEQVRERIA 455 Query: 630 QIESQEAMI 638 +++Q A + Sbjct: 456 ALQNQNATV 464 >gi|169830179|ref|YP_001700337.1| replicative DNA helicase [Lysinibacillus sphaericus C3-41] gi|168994667|gb|ACA42207.1| Replicative DNA helicase [Lysinibacillus sphaericus C3-41] Length = 453 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + ++ E +++ + P L + L + N +K++ + + Sbjct: 2 NEPMMDRVPPHNREAEQSVIGAIFLEPQSLITASEILLADDFYLNAHKKIFETMLRLSDQ 61 Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 K + + L + EL + A E ++ Sbjct: 62 GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121 Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + Y R + E EK++ +V + A + +L E I Q++SQ+ Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181 Query: 637 MIEG 640 + G Sbjct: 182 DVTG 185 >gi|118479701|ref|YP_896852.1| recombination and DNA strand exchange inhibitor protein [Bacillus thuringiensis str. Al Hakam] gi|196044939|ref|ZP_03112173.1| MutS2 family protein [Bacillus cereus 03BB108] gi|225866525|ref|YP_002751903.1| MutS2 family protein [Bacillus cereus 03BB102] gi|229186805|ref|ZP_04313960.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1] gi|229198701|ref|ZP_04325400.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293] gi|189030425|sp|A0RJF2|MUTS2_BACAH RecName: Full=MutS2 protein gi|254766189|sp|C1ETZ0|MUTS2_BACC3 RecName: Full=MutS2 protein gi|118418926|gb|ABK87345.1| DNA mismatch repair protein, MutS family [Bacillus thuringiensis str. Al Hakam] gi|196024427|gb|EDX63100.1| MutS2 family protein [Bacillus cereus 03BB108] gi|225787320|gb|ACO27537.1| MutS2 family protein [Bacillus cereus 03BB102] gi|228584777|gb|EEK42896.1| hypothetical protein bcere0001_42260 [Bacillus cereus m1293] gi|228596542|gb|EEK54207.1| hypothetical protein bcere0004_43460 [Bacillus cereus BGSC 6E1] Length = 786 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|307943674|ref|ZP_07659018.1| putative regulatory protein RepA [Roseibium sp. TrichSKD4] gi|307773304|gb|EFO32521.1| putative regulatory protein RepA [Roseibium sp. TrichSKD4] Length = 349 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 10/109 (9%) Query: 7 FIKDLLIHIP---ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 I + I IS+++ + + G + EK S +KG++ Sbjct: 5 IISQVKEAIRDRGISDVV---LALFPDAVRSASGIHMGS--VKGEKGQSLSVERTKGYWK 59 Query: 64 CFSCHVKG-DHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKK 110 + KG D ++ S E+ LA + + + +K Sbjct: 60 DHATGDKGADLIALWKQHRQLSSKTEAAIELAERLSIEIAESKADVPRK 108 >gi|157074178|ref|NP_001096803.1| coiled-coil domain-containing protein 157 [Bos taurus] gi|134025926|gb|AAI34592.1| LOC100125300 protein [Bos taurus] Length = 637 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +L L + + E G R + Q Q + + + RE Sbjct: 234 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 293 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L + + +++ Q + S E ++ L E + E+ Sbjct: 294 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 351 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 L +LD + S + V + +L + R L +Q + ++++ ++ Sbjct: 352 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 411 Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641 + + + E+ ++ ++ +E ++ F Sbjct: 412 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 466 >gi|126651971|ref|ZP_01724163.1| replicative DNA helicase [Bacillus sp. B14905] gi|126591240|gb|EAZ85349.1| replicative DNA helicase [Bacillus sp. B14905] Length = 453 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + + ++ E +++ + P L + L + N +K++ + + Sbjct: 2 NEPMMDRVPPHNREAEQSVIGAIFLEPQSLITASEILLADDFYLNAHKKIFETMLRLSDQ 61 Query: 529 QKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 K + + L + EL + A E ++ Sbjct: 62 GKAIDVVTVTEELSAKKEIEDVGGLSYLLELANAVPTAANVAHYAKIVEEKALLRRLIRV 121 Query: 579 QQALAL--YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + Y R + E EK++ +V + A + +L E I Q++SQ+ Sbjct: 122 ATKIVEDGYTREDEVEALLGEAEKKMMEVANRKNAGDFKHVKDVLVETFDNIEQLQSQKG 181 Query: 637 MIEG 640 + G Sbjct: 182 DVTG 185 >gi|71656793|ref|XP_816938.1| kinesin [Trypanosoma cruzi strain CL Brener] gi|70882099|gb|EAN95087.1| kinesin, putative [Trypanosoma cruzi] Length = 1170 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 22/291 (7%), Positives = 98/291 (33%), Gaps = 17/291 (5%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R A + + + + ++ ++ + + L Sbjct: 698 RNKRPDASNSTEQVAELNIRVQNLKREVDKMRKYDAKKEQYMQRYSFFYVDMASDILHRI 757 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Q + ++Q+ +I+++ G ++ + ++ R ++ + Sbjct: 758 MLQKEEEFVRQVAHLFISQNGEVGDGIRRLNKAHREEMEQMRKRHVEEMEELHKLSSARL 817 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 + ++ + + ++ + +L + + ++ + E+ ++L Sbjct: 818 KESIEKSNELYQQLIDKHVDKLNYVEERMTKNKEFYEAELKRLGEENEKTRVRYEEQLDR 877 Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + ++L Q+ + + +++ + + +R + R +++ E++ Sbjct: 878 ARTQHQKETRKLREQLSSGASDRQRSGEAVKRLQE--EHEKEMNRRQEEMDRYRQDKEQE 935 Query: 602 IAQVTAKGEAEKTA-------------ILISILHEVHIQIHQIESQEAMIE 639 I+++ + + EK L ++E+ ++ + +++ +E Sbjct: 936 ISRLKKQVDNEKLRHESDMLEKERQRRSLEREVNELRRELLKAQTERNRME 986 >gi|330997711|ref|ZP_08321556.1| ATP-dependent chaperone protein ClpB [Paraprevotella xylaniphila YIT 11841] gi|329570239|gb|EGG51979.1| ATP-dependent chaperone protein ClpB [Paraprevotella xylaniphila YIT 11841] Length = 866 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 34/273 (12%), Positives = 74/273 (27%), Gaps = 41/273 (15%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + L +DM + + + I Sbjct: 220 RILRGDVPENLKDKQLYSLDMGALIAGAKYKGEFEERLKSVINEVTKSEGRI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++N P L + L + R+ + Sbjct: 328 ERRFQTVMVNEPDTLSTI---------------SILRGLKERYENHHKV-------RIQD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + D + I + + A L + + +EIE+++ Sbjct: 366 DAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSVPEELDEIERRLK 418 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 Q+ + EA K L ++ +I +++ QE+ Sbjct: 419 QLEIEREAIKRENDQPKLEQLSKEIAELKEQES 451 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 79/217 (36%), Gaps = 20/217 (9%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + + +++ + + K +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQTVMVNEPDTLSTISILRGLKERYENHHKVRIQDDAIIAAVELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + +EI +RL + + + R Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRME-----RDSVPEELDEIERRLKQLEIER--EAIKR 429 Query: 556 QVRDAGLWSATTEANIVDVRQG-----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + L + E + ++ ++ L + + +Q E+++ + + +G+ Sbjct: 430 ENDQPKLEQLSKEIAELKEQESSYKAKWEAERGLVNKIQQNKQQIEQLKFEAERAEREGD 489 Query: 611 AEKTAI--------LISILHEVHIQIHQIESQEAMIE 639 K A L ++ + Q+ + +AMI+ Sbjct: 490 YGKVAEIRYGKLKALEDEINRIQDQLKDTQGGDAMIK 526 >gi|258512699|ref|YP_003186133.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479425|gb|ACV59744.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 812 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 69/215 (32%), Gaps = 12/215 (5%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y DRL+++ + + + A + + +++ +L +G+L Sbjct: 252 YRGEFEDRLKKIMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCI 311 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + + PA+ + ++Q + E ++ L + Sbjct: 312 GATTLDEYRKHIEKDPAL-ERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRV------- 363 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 ++ + +K DR + D L + + + + L ++ E++ Sbjct: 364 KITDEALEAAVKLSDRYISDRFLPDKAIDLIDEAASRVRLRTHTAPPNLKELEQKLEKVR 423 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E E A L ++ ++ +++ Sbjct: 424 SEKDAAVQSQEFELAASLRDEEQKIKEELERLKET 458 >gi|210612358|ref|ZP_03289283.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787] gi|210151618|gb|EEA82625.1| hypothetical protein CLONEX_01484 [Clostridium nexile DSM 1787] Length = 635 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 52/505 (10%), Positives = 123/505 (24%), Gaps = 46/505 (9%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + ++L YV R +Y + S N K + Sbjct: 2 EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDL----- 117 Y FS + G + F+ G SF E+V+ L G + + + K++ + + Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKELLGEEG--VGDTNRRTAKEDAGRQKVCPIPL 108 Query: 118 --------IRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSL 169 E+A + K + +S A + Sbjct: 109 PGLELPERNESCEIARKYLIEQRKLSEYLVDQMIEKGDIYESKAYHNVVFVGRDKEQNPR 168 Query: 170 REHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGE 229 +R + + G D PI + + Sbjct: 169 YAAMRGTDENRYRGEARGSEKAYGFGHIGTDEKPFVFESPIDLLS------YITAVPEEW 222 Query: 230 SVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNS--SSFIILVEGYMDVLSLC 287 S + K +Y + ++ + + D N F+ ++ V L Sbjct: 223 EKHSYISLGGLSEKAMKRMYTEYPHIHSIYLCLDNDESGNERCRQFVSMIPEEFCVFRLE 282 Query: 288 QAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNR 347 A + + + + R L + Sbjct: 283 SAKKDWNECLVEGLPVKEMAKQICLRDNRENLIPVTKMSEVEETVVQWLWYPFIPFGKVT 342 Query: 348 VNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIH 407 + +G+ + A L + L E + + Sbjct: 343 LIQGNPGKGK-------TWLAMAIAAYCTNGKELPNALP---IEPFNVLYQTAEDGIADT 392 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 +K + R + +L + + G + + Sbjct: 393 IKPRLAKCGADMTRVRFINEDEKQLSMTDDRIEKAIRQNNVRLMIMDPIQAYLGANVDMN 452 Query: 468 QSSLVKGKLSKKPSLREAALLLTLI 492 +++ ++ ++ E ++ Sbjct: 453 RANEIRPLFRHLSTIAERTGCAIVL 477 >gi|146329872|ref|YP_001209152.1| ATP-dependent protease La [Dichelobacter nodosus VCS1703A] gi|302425050|sp|A5EWF3|LON_DICNV RecName: Full=Lon protease; AltName: Full=ATP-dependent protease La gi|146233342|gb|ABQ14320.1| ATP-dependent protease La [Dichelobacter nodosus VCS1703A] Length = 805 Score = 46.0 bits (107), Expect = 0.019, Method: Composition-based stats. Identities = 17/154 (11%), Positives = 51/154 (33%), Gaps = 7/154 (4%) Query: 491 LINHPA--ILQEQYQELADIRYDNNELQKLWSFLFSDFVE---QKYFLPEEIHQRLCERG 545 +N ++ L + E + L +F + + +E+ + L Sbjct: 97 ALNDDEKMFSAKKRNMLEKNSTKSEEHDSIVEILIEEFAKYLRNQERSADELLETLRGIN 156 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 + D + + D + Q+ + L + + ++I+ ++ Q Sbjct: 157 DIGRISDTIAAHMDFRIEERVHLLAMEDAYERSQRLMILLAQESEKNELNKKIKNRVKQQ 216 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + E L + + ++ +++ + IE Sbjct: 217 MERNQREYY--LNEKIKAIQKELGEMDEAQNDIE 248 >gi|324328443|gb|ADY23703.1| recombination and DNA strand exchange inhibitor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 786 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|291544939|emb|CBL18048.1| Mismatch repair ATPase (MutS family) [Ruminococcus sp. 18P13] Length = 2271 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 23/100 (23%) Query: 1 MNYPRDFIKDLLIHIPISNL----IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN 56 M + + NL + D + V + HD S H Sbjct: 1 MRIT----DEQKERANLVNLPQFLMSHGFDLKKVGKEYVWKE-------HD----SLHIK 45 Query: 57 D----SKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 D G ++ FS + GD++ L + SFI++V+ L Sbjct: 46 DNGPGECGQWFRFSENKGGDNIGLLREYMDMSFIDAVEAL 85 >gi|229093646|ref|ZP_04224746.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42] gi|228689733|gb|EEL43540.1| hypothetical protein bcere0021_43700 [Bacillus cereus Rock3-42] Length = 786 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|146418150|ref|XP_001485041.1| hypothetical protein PGUG_02770 [Meyerozyma guilliermondii ATCC 6260] Length = 891 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 19/297 (6%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P +R + L + +R +R A + + N +K Sbjct: 524 PAELVRSQLQKFAYTLSKTVDTIDPENARRLEASREAAVKRAVAGISEEQEEIANRVKVM 583 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R + + + + E + ++ +Q+ S ++ + + Sbjct: 584 DERKRVIDVAKRKQDEEAARLKLERLSAEQKAEQERMLAEQERRSLEKLEREKHLIRERE 643 Query: 479 KPSLREAA----LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K + E ++ +++ L + I N + + L L + + + Sbjct: 644 KRKIAEEINAKGIIKIDLDNLENLDTDKLRIMQIEQLNKDKKNLEEKLRALSKKTDHTER 703 Query: 535 E---EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY------ 585 Q L + ++ ++ A + + + ++ L Sbjct: 704 AFRRYELQYLEKDAEAQIEQEAKNYELVKANKIAKAKKDFEEAHALKERFTRLVPDYSEF 763 Query: 586 ------KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 K L + + E + Q+ + + + I L + + Q E +EA Sbjct: 764 KSEINAKNKDKLKQLQAEAKAQLERAKQERIEQIKRERIEELAQRKREQIQAEQEEA 820 >gi|126332018|ref|XP_001365741.1| PREDICTED: similar to dynactin 1 p150 [Monodelphis domestica] Length = 1285 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 15/301 (4%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + L E ++E E + +LEI D Sbjct: 299 EEMADTADAIEMATLDKEMAEERAESLQQEVEALKERLEELTTDLEILKAEIEEKGSDGA 358 Query: 420 LRYYYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Y + + ++ +L + + + + + L + +L + Sbjct: 359 ASSYQLKQLEEQNARLKDALVRMRDLSASEKQEHIKLQKLMEKKNVELEAVRQQRERLQE 418 Query: 479 KPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPE 535 + E + A L +E + L D + E +++L + + Sbjct: 419 ELGQAERTIDELKEQVDAALGAEEMVETLTDRNLNLEEKVRELRETVGDLEAMNEMNDEL 478 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 479 QENARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNREL 538 Query: 596 EEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKM 644 ++ + + E K A + + +++ Q+E +A ++ F Sbjct: 539 TNQQEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHVSLLTAFMPD 598 Query: 645 S 645 S Sbjct: 599 S 599 Score = 41.8 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 23/222 (10%), Positives = 68/222 (30%), Gaps = 11/222 (4%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 228 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRKLKEARKEA 287 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + +E+ E + Sbjct: 288 KDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERLEELTTDLEILK 347 Query: 539 QRLCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 + E+G +Q+ + + D+ +Q ++ +K+ Sbjct: 348 AEIEEKGSDGAASSYQLKQLEEQNARLKDALVRMRDLSASEKQEHIKLQKLM----EKKN 403 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +E + + + E+ + E+ Q+ E M+E Sbjct: 404 VELEAVRQQRERLQEELGQAERTIDELKEQVDAALGAEEMVE 445 >gi|15896946|ref|NP_350295.1| replicative DNA helicase [Clostridium acetobutylicum ATCC 824] gi|15026821|gb|AAK81635.1|AE007867_2 Replicative DNA helicase, DNAC [Clostridium acetobutylicum ATCC 824] gi|325511123|gb|ADZ22759.1| replicative DNA helicase [Clostridium acetobutylicum EA 2018] Length = 442 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 18/184 (9%), Positives = 59/184 (32%), Gaps = 18/184 (9%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + + E ++L ++I+ + + + L + Q +++ + F + Sbjct: 3 APLRAMPQNLEAEQSVLGSMISDKNCIAQAAESLRGEDFYRQNHQIIFNAMLELFQKDIP 62 Query: 532 FLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVD-VRQGYQQ 580 + + L ++ + + ++ + + Sbjct: 63 VDLITLLEHLKSTDKLEASGGITYVTQIRDSIASTANIQSYIKIVKDKAVLRKLIKSSTD 122 Query: 581 AL-ALYKRFRLLSRQKEEIEKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + Y + + + + EK+ IA+ + E +++ E QI ++ + + Sbjct: 123 IIEESYSKQDDVEKVLDSAEKRIFDIAENKVTSDFEAMNVVLERGFE---QIEKLYNNKG 179 Query: 637 MIEG 640 I G Sbjct: 180 EITG 183 >gi|330887900|gb|EGH20561.1| hypothetical protein PSYMO_03293 [Pseudomonas syringae pv. mori str. 301020] Length = 738 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65 +L + N + A CP H +K+PS + D + +CF Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63 Query: 66 SC 67 C Sbjct: 64 GC 65 >gi|320330305|gb|EFW86288.1| hypothetical protein PsgRace4_09075 [Pseudomonas syringae pv. glycinea str. race 4] gi|330882250|gb|EGH16399.1| hypothetical protein Pgy4_25435 [Pseudomonas syringae pv. glycinea str. race 4] Length = 735 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65 +L + N + A CP H +K+PS + D + +CF Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63 Query: 66 SC 67 C Sbjct: 64 GC 65 >gi|320325853|gb|EFW81913.1| hypothetical protein PsgB076_04511 [Pseudomonas syringae pv. glycinea str. B076] Length = 738 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 17/62 (27%) Query: 10 DLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCN---DSKGFYYCF- 65 +L + N + A CP H +K+PS + D + +CF Sbjct: 17 RILQRLD---------GVKPSGKNR----HMAKCPAHLDKSPSLSVSSTDDGRALIHCFA 63 Query: 66 SC 67 C Sbjct: 64 GC 65 >gi|306833656|ref|ZP_07466783.1| CHC2 family Zn-finger protein [Streptococcus bovis ATCC 700338] gi|304424426|gb|EFM27565.1| CHC2 family Zn-finger protein [Streptococcus bovis ATCC 700338] Length = 336 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 P HD SF + FS V+GD + F+ + G +F E+V L Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDVQGDVIDFVQLVAGVTFKEAVSYL 78 >gi|251792440|ref|YP_003007166.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700] gi|247533833|gb|ACS97079.1| replicative DNA helicase [Aggregatibacter aphrophilus NJ8700] Length = 466 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 10/160 (6%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + E A+L +++ + + + + + E + ++ Sbjct: 2 ASKNSPPTKEQTSLNIPPHSIEAEQAVLGSILLNDKCWDDVAENVVKEDFYRFEHRLIFE 61 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + +Q + Q L E+++Q+ A L + T A Sbjct: 62 EMEKLMTQQAPVDLITLEQALKN---REVIEQVGGFAYLAELSNNTPSAAN-------VG 111 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 A A R + + R+ + +IAQ + + + L+ Sbjct: 112 AYANVVREKAIMRELISVGNKIAQNSYSPKGQDVKQLLDE 151 >gi|16763169|ref|NP_458786.1| hypothetical protein STY4707 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144648|ref|NP_807990.1| hypothetical protein t4399 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213608042|ref|ZP_03368868.1| hypothetical protein SentesTyp_00272 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213850082|ref|ZP_03380980.1| hypothetical protein SentesT_00170 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25512861|pir||AF1047 probable membrane protein yjeP [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505477|emb|CAD06827.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29140287|gb|AAO71850.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1108 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|332361296|gb|EGJ39100.1| CHC2 family Zn-finger domain protein [Streptococcus sanguinis SK1056] Length = 362 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 22/91 (24%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I+ + I + + + P HD SF Sbjct: 4 IEKVKQKA-ILEVAES-----------LGYSFKRLSGQVYEHPEHD----SFRIFADTNT 47 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 + FS V+GD + F+ + G SF +++ L Sbjct: 48 FKWFSRDVQGDVIDFVQLMTGVSFKKALSYL 78 >gi|325291427|ref|YP_004267608.1| primary replicative DNA helicase [Syntrophobotulus glycolicus DSM 8271] gi|324966828|gb|ADY57607.1| primary replicative DNA helicase [Syntrophobotulus glycolicus DSM 8271] Length = 441 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 56/169 (33%), Gaps = 15/169 (8%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 K+ E A+L +L+ P ++ L + + + +++ + + + Sbjct: 3 PTKVPPHNLEAEQAVLGSLMLDPEQASVAFEILRFEDFYRDSHKIIFTAIQEILDKGEPV 62 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L + G +L+ + + + Y + +A R L Sbjct: 63 DLVTVAEYLRQYG------RLESIGGIGTISQVASSVPSAANIEYYARIVAEKALLRQLI 116 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + +E++ E +L E I +I ++ +GF Sbjct: 117 KMAGYLEQK--------GYEPGEEAFDLLEEAEKMILEISHRQ-TKDGF 156 >gi|322615512|gb|EFY12432.1| hypothetical protein SEEM315_10109 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618572|gb|EFY15461.1| hypothetical protein SEEM971_10368 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622015|gb|EFY18865.1| hypothetical protein SEEM973_17912 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322627087|gb|EFY23879.1| hypothetical protein SEEM974_00297 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631046|gb|EFY27810.1| hypothetical protein SEEM201_05123 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637735|gb|EFY34436.1| hypothetical protein SEEM202_03794 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642399|gb|EFY39003.1| hypothetical protein SEEM954_03967 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645660|gb|EFY42185.1| hypothetical protein SEEM054_18755 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650500|gb|EFY46908.1| hypothetical protein SEEM675_15239 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653452|gb|EFY49782.1| hypothetical protein SEEM965_03779 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659721|gb|EFY55964.1| hypothetical protein SEEM19N_08284 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662068|gb|EFY58284.1| hypothetical protein SEEM801_16186 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666183|gb|EFY62361.1| hypothetical protein SEEM507_03119 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672603|gb|EFY68714.1| hypothetical protein SEEM877_15474 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676033|gb|EFY72104.1| hypothetical protein SEEM867_14688 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680517|gb|EFY76555.1| hypothetical protein SEEM180_12453 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684589|gb|EFY80593.1| hypothetical protein SEEM600_17667 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192904|gb|EFZ78130.1| hypothetical protein SEEM581_21193 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197220|gb|EFZ82360.1| hypothetical protein SEEM501_11161 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201663|gb|EFZ86727.1| hypothetical protein SEEM460_21646 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206177|gb|EFZ91139.1| hypothetical protein SEEM020_11080 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213186|gb|EFZ97988.1| hypothetical protein SEEM6152_12603 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215559|gb|EGA00303.1| hypothetical protein SEEM0077_07803 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219544|gb|EGA04029.1| hypothetical protein SEEM0047_20958 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227847|gb|EGA12001.1| hypothetical protein SEEM0055_19426 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229017|gb|EGA13146.1| hypothetical protein SEEM0052_05185 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236371|gb|EGA20447.1| hypothetical protein SEEM3312_18801 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237509|gb|EGA21570.1| hypothetical protein SEEM5258_19652 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241825|gb|EGA25854.1| hypothetical protein SEEM1156_12702 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248026|gb|EGA31963.1| putative mechanosensitive channel protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254643|gb|EGA38454.1| putative mechanosensitive channel protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258298|gb|EGA41975.1| putative mechanosensitive channel protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259575|gb|EGA43209.1| hypothetical protein SEEM8284_10167 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265848|gb|EGA49344.1| putative mechanosensitive channel protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270292|gb|EGA53740.1| putative mechanosensitive channel protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1108 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|301160839|emb|CBW20370.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320088777|emb|CBY98535.1| Potassium efflux system kefA Protein aefA; Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1100 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 10 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 69 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 70 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 129 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 130 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 189 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 190 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 229 >gi|270489019|ref|ZP_06206093.1| replicative DNA helicase [Yersinia pestis KIM D27] gi|270337523|gb|EFA48300.1| replicative DNA helicase [Yersinia pestis KIM D27] Length = 459 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 15/135 (11%), Positives = 42/135 (31%), Gaps = 3/135 (2%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + KL E ++L L+ + +A + + +++++ + Sbjct: 2 TEPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPHRRIFTEMQ 61 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 K + + L ++G L + A L T A + + A Sbjct: 62 RLLENSKPIDLITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAYADIVRERA 118 Query: 584 LYKRFRLLSRQKEEI 598 + + ++ + + Sbjct: 119 VVREMISVANEIADA 133 >gi|261249442|emb|CBG27306.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] Length = 1108 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|218290044|ref|ZP_03494211.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239878|gb|EED07066.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 812 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 69/215 (32%), Gaps = 12/215 (5%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWK----KNARHRDQKGPSQRLMQSSLVKGKLSKK 479 Y DRL+++ + + + A + + +++ +L +G+L Sbjct: 252 YRGEFEDRLKKIMDEIRQAGNVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQCI 311 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + + PA+ + ++Q + E ++ L + Sbjct: 312 GATTLDEYRKHIEKDPAL-ERRFQPIMVDEPSPEEALEILKGLRDRYEAHHRV------- 363 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 ++ + +K DR + D L + + + + L ++ E++ Sbjct: 364 KITDEALEAAVKLSDRYISDRFLPDKAIDLIDEAASRVRLRTHTAPPNLKELEQKLEKVR 423 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E E A L ++ ++ +++ Sbjct: 424 SEKDAAVQSQEFELAASLRDEEQKIKEELERLKET 458 >gi|158299190|ref|XP_319309.3| AGAP010147-PA [Anopheles gambiae str. PEST] gi|157014247|gb|EAA43613.3| AGAP010147-PA [Anopheles gambiae str. PEST] Length = 1959 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1571 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1630 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1631 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1683 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1684 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1743 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + ++ L Sbjct: 1744 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAESNAL 1803 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++ES+ Sbjct: 1804 KGGKKAIQKLEQRVRELESE 1823 Score = 44.1 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 39/329 (11%), Positives = 94/329 (28%), Gaps = 23/329 (6%) Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + ID + R D + + K E L ++ D+ Sbjct: 1564 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1623 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440 + + E + + + ++ ++ I +R Q + Sbjct: 1624 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1683 Query: 441 TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E + R +Q+ ++L + S ++ E+ L + +L Sbjct: 1684 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1743 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 E + + +L L + E++ + L ++ EL +LD Sbjct: 1744 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDEAES 1800 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLL--------SRQKEEI--EKQIAQVTAK 608 +A + + + L +R R+ +E+ + + + + Sbjct: 1801 NALKGGKKAIQKLEQRVRELESELDSEQRRHADAQKNLRKSERRIKELTFQSEEDRKNHE 1860 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAM 637 + L + QI + E A+ Sbjct: 1861 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1889 >gi|296192315|ref|XP_002744007.1| PREDICTED: homeobox protein cut-like 1 [Callithrix jacchus] Length = 1531 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 101/286 (35%), Gaps = 22/286 (7%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + + + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDLGQQLQLKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN-- 493 Q + ++ ++ + + KL + ++ L T + Sbjct: 161 EQTLKNQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKVQS--LQTALEKT 218 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + +E++ + + L + E E + ++L L Sbjct: 219 RTELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLA 278 Query: 552 QLDRQV------------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEI 598 ++ + A E I + + Q+ A + R S Q ++ Sbjct: 279 SQIQKAPDVEQAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQAGLTKLRENSASQISQL 338 Query: 599 EKQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 E+Q++ + + E+ + EV +++ ++S E A EG G Sbjct: 339 EQQLSAKNSTLKQLEEKLKGQADYEEVKKELNILKSMEFAPSEGAG 384 >gi|254784763|ref|YP_003072191.1| replicative DNA helicase [Teredinibacter turnerae T7901] gi|237686426|gb|ACR13690.1| replicative DNA helicase [Teredinibacter turnerae T7901] Length = 442 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 14/150 (9%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++L L+ + +++A+ + + +K+++ +F + + + L Sbjct: 7 AEQSVLGGLMQDASNFDGVSEQIAEGDFYKSGHRKIYAAMFQLIERDQPIDVITVSEYLT 66 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + E + LD V A ++ A A R R RQ +I Sbjct: 67 QTDELEAVGGLDYLVDLATNVPSSANVA----------AYARIVRERATFRQLISAATEI 116 Query: 603 AQVT----AKGEAEKTAILISILHEVHIQI 628 ++ + G + + + E+ + Sbjct: 117 SRASFNPAGLGSDDLLQLAEKRVLEIAEER 146 >gi|220935429|ref|YP_002514328.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996739|gb|ACL73341.1| OmpA/MotB domain-containing protein [Thioalkalivibrio sp. HL-EbGR7] Length = 427 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 12/217 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + L + + ++ Q+ + S + + + Sbjct: 61 VTELAETLSMREAEAEDLRERVQALSGRLQVTLAEREQLQQSVDQSQAELRQQAETLEAH 120 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLC 542 + +L L+ ++L ++ +L S L + RL Sbjct: 121 LLQIASLQEDIDALRRLREDLES------QVGRLASELEESQASAGQLRDRSRALEARLA 174 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL--ALYKRFRLLSRQKEEIEK 600 E LL Q + + R+ + D +++L R L RQ +++E+ Sbjct: 175 ETQETTLLAQREIEAREIRIQDLAAGIEERDRALVEERSLTADAQARVDALRRQMQDLEQ 234 Query: 601 QIAQVTAK--GEAEKTAILISILHEVHIQIHQIESQE 635 Q+A++ E + ++ +++ ++E Sbjct: 235 QLARLNETLRAREETIEAQQVEIADLGERLNLALAEE 271 Score = 39.1 bits (89), Expect = 2.3, Method: Composition-based stats. Identities = 17/137 (12%), Positives = 55/137 (40%), Gaps = 7/137 (5%) Query: 505 LADIRYD-NNELQKLWSFL--FSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRD 559 L+D+ ++ + L+ L + + ++ + + E++ +R+ L + ++ + Sbjct: 43 LSDVLFERHRALETLQTRVTELAETLSMREAEAEDLRERVQALSGRLQVTLAEREQLQQS 102 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA--IL 617 A + Q +L + L R +E++E Q+ ++ ++ E + + L Sbjct: 103 VDQSQAELRQQAETLEAHLLQIASLQEDIDALRRLREDLESQVGRLASELEESQASAGQL 162 Query: 618 ISILHEVHIQIHQIESQ 634 + ++ + + Sbjct: 163 RDRSRALEARLAETQET 179 >gi|197294337|ref|YP_001798878.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] gi|171853664|emb|CAM11545.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] Length = 427 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL TL+ +P + + + N + + ++ + ++ + + L Sbjct: 4 AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKRLKLQNREIDYVTVGSVLD 63 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + +D + + A + + Y + R L +++ ++ Sbjct: 64 NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 + K+ + + L V Q +EGF Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136 >gi|16767596|ref|NP_463211.1| hypothetical protein STM4347 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161617620|ref|YP_001591585.1| hypothetical protein SPAB_05480 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994769|ref|ZP_02575860.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237078|ref|ZP_02662136.1| transporter, small conductance mechanosensitive ion channel (MscS) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168244872|ref|ZP_02669804.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168822522|ref|ZP_02834522.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444691|ref|YP_002043605.1| hypothetical protein SNSL254_A4708 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194450171|ref|YP_002048393.1| hypothetical protein SeHA_C4765 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194734787|ref|YP_002117291.1| hypothetical protein SeSA_A4616 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248122|ref|YP_002149264.1| hypothetical protein SeAg_B4625 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198242659|ref|YP_002218234.1| hypothetical protein SeD_A4744 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200387394|ref|ZP_03214006.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204926659|ref|ZP_03217861.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205355109|ref|YP_002228910.1| hypothetical protein SG4190 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859496|ref|YP_002246147.1| hypothetical protein SEN4117 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052291|ref|ZP_03345169.1| hypothetical protein Salmoneentericaenterica_04772 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428683|ref|ZP_03361433.1| hypothetical protein SentesTyphi_26036 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|16422910|gb|AAL23170.1| putative periplasmic binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161366984|gb|ABX70752.1| hypothetical protein SPAB_05480 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403354|gb|ACF63576.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408475|gb|ACF68694.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194710289|gb|ACF89510.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197211825|gb|ACH49222.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290053|gb|EDY29412.1| transporter, small conductance mechanosensitive ion channel (MscS) family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937175|gb|ACH74508.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199604492|gb|EDZ03037.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204323324|gb|EDZ08519.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274890|emb|CAR39956.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327415|gb|EDZ14179.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205336335|gb|EDZ23099.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341102|gb|EDZ27866.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206711299|emb|CAR35677.1| putative membrane protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|267996681|gb|ACY91566.1| hypothetical protein STM14_5228 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312915448|dbj|BAJ39422.1| hypothetical protein STMDT12_C44790 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223222|gb|EFX48292.1| Potassium efflux system KefA protein / Small-conductance mechanosensitive channel [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132688|gb|ADX20118.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326626039|gb|EGE32384.1| Mechanosensitive ion channel MscS [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326630266|gb|EGE36609.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332991161|gb|AEF10144.1| hypothetical protein STMUK_4332 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1108 Score = 46.0 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|327270357|ref|XP_003219956.1| PREDICTED: protein diaphanous homolog 1-like [Anolis carolinensis] Length = 1258 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 79/234 (33%), Gaps = 23/234 (9%) Query: 415 IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 I+ + +R Q +++ ++ + + + ++++ + R+ + Sbjct: 343 IRSELMRSGLQQILKELRTLDNEELLVQLQVFEESGEEDSADLRSRLEDVRIEIDDPSEV 402 Query: 475 KL----SKKPSLREAALLLTLINH-----------PAILQEQYQELADIRY----DNNEL 515 + K S E L ++ H P + + ++ I + + Sbjct: 403 FQILLNTVKDSKAEQHFLS-MLQHLLLVRNDYEARPQYFKLIDECISQIVLHKNGADPDF 461 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 ++ L + + ++ + E EL K+LD ++ + D+ Sbjct: 462 RRKHLDLHIEGLIDNLIDQTKVAK--SEAKAIELEKKLDSELTARHELQVEMKKKENDLE 519 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 Q Q L + Q +EK+ + T ++ A L+ L ++ ++ Sbjct: 520 QKLQDLLHEKETLESEKEQVS-LEKKSLENTTSLLNDQIASLMQELEDLKKKME 572 >gi|296122869|ref|YP_003630647.1| replicative DNA helicase [Planctomyces limnophilus DSM 3776] gi|296015209|gb|ADG68448.1| replicative DNA helicase [Planctomyces limnophilus DSM 3776] Length = 472 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 72/200 (36%), Gaps = 21/200 (10%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 + S+ +S G + + + E ++L +++ E L + ++ Q Sbjct: 12 SRSEKSRVKPTASDFAGHVPPQNLIAEKSVLGSILLQSRAFDEVADFLLADHFYHHGHQL 71 Query: 518 LWSFLFSDFVEQ-KYFLPEEIHQR------LCERGFGELLKQLDRQVRDAGLWSATTEAN 570 +++ + + + + P + + L + G E L ++ V A E Sbjct: 72 IYAAIKAIVEDNKQPVDPVTVAEHLDQKSQLEDVGGIEYLMEVLETVPHAANVKGYAEIV 131 Query: 571 IVD-VRQGYQQALALYKR---------FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +++ A R +LSR +++I + + + + I++ Sbjct: 132 RDRWIQRSLTDACTEVLRDCYSGSDDTSEVLSRAEQKIFGILQEQERSSQIDMNTIMMQT 191 Query: 621 LHEVHIQIHQIESQEAMIEG 640 LH ++ + + E +I G Sbjct: 192 LHRINARFDR----EGVISG 207 >gi|260778516|ref|ZP_05887408.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604680|gb|EEX30975.1| ClpB protein [Vibrio coralliilyticus ATCC BAA-450] Length = 870 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 80/216 (37%), Gaps = 12/216 (5%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + I ++KY + R ++ + ++++++ + + E+ Sbjct: 325 KTIAATTWAEYKKYFEKDPALTRRFQVVSIEEPNAEDAKQMLRGIAASLQKHHGAFIAES 384 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLC- 542 A+ A + + L + + + L S + K + E + Q + Sbjct: 385 AI-------DAAVHLSIRYLPSRQLPDKAISLLDTASARIALTQGAKPEVIEALEQTIRY 437 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ L++ + A A I + + A +K+ L + + ++++I Sbjct: 438 QQNEKSALEKENALFGIAEDEIAELTTEIAENEKKLTDYQARWKQEVDLVDEIKTLQQEI 497 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + A+ +K L+E+ Q+ +++ +E ++ Sbjct: 498 SDGQAEESVDKAKQ--DKLNELIDQLGELQGEEPLV 531 >gi|224586191|ref|YP_002639990.1| hypothetical protein SPC_4497 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470719|gb|ACN48549.1| hypothetical protein SPC_4497 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1108 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|96975038|ref|NP_694955.2| centrosomal protein of 120 kDa isoform 1 [Homo sapiens] gi|205696377|sp|Q8N960|CE120_HUMAN RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120; AltName: Full=Coiled-coil domain-containing protein 100 Length = 986 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914 >gi|28386007|gb|AAH46493.1| Cep120 protein [Mus musculus] Length = 635 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 295 PRETLEYKAALELEMWKEMQEDIFESQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 352 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L +L + S ++ + ++ + + +Q S+ + + Sbjct: 353 AEYSILEGKLQKALTELETREQQLASAEAELQRERKELQLERERNLQELQDSVRRARDDC 412 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E L L LQ+Q + + L+K + + + Sbjct: 413 VYQVELERLKLKQLEEDKQRLQQQLNDAGN---KYKTLEKEFQQFKDQQNNKPEIRLQSE 469 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 470 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 526 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E E L ++ +++++ QE Sbjct: 527 LEQMRLRYLAAEEKETVRTEQQELLDIRNELNRLRQQE 564 >gi|325696699|gb|EGD38587.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK160] Length = 641 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 60/158 (37%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ QV A + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALREEMEQVDSDKPVPAN---DYQIQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ + + L E QI Q+ + +EAM+E Sbjct: 599 QLQEAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 633 >gi|257069176|ref|YP_003155431.1| peptide chain release factor 2 [Brachybacterium faecium DSM 4810] gi|256559994|gb|ACU85841.1| bacterial peptide chain release factor 2 (bRF-2) [Brachybacterium faecium DSM 4810] Length = 371 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%) Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + L++Q LW A V A + +R L + E++E + Sbjct: 27 DALDAKIADLEKQASAQDLWDDVDNA--QKVSSALSHAQSERRRISELDSRIEDLEVMVQ 84 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIE 632 + +A+ + L +H + ++E Sbjct: 85 LAAEEDDADTLEEAENELVSIHKTLDELE 113 >gi|212530330|ref|XP_002145322.1| kinesin family protein [Penicillium marneffei ATCC 18224] gi|210074720|gb|EEA28807.1| kinesin family protein [Penicillium marneffei ATCC 18224] Length = 1741 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 82/250 (32%), Gaps = 10/250 (4%) Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 + I K I I D+ + + ++ + L Q+ +G + Sbjct: 422 HLSETLNTVQYAQRARAIQSKPRIQQITDESDKQAVIERLKAEIAFLRQQIRNSETGDRK 481 Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 + R L L + S R A L+ L + E ELA Sbjct: 482 SVVQPERSERSSDREMELQNHLLDMQESYTSLSQRHAKLISELSKASDLQTEDPDELAA- 540 Query: 509 RYDNNELQKL-WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 +N+ +++L S F++ VEQ E+ Q L L + L + Sbjct: 541 AIENSSIERLKRSHSFAESVEQVVLEYEKTIQSLESS-LSNTRSSLSNTES-SLLERESK 598 Query: 568 EANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 A + + Q + L +R ++E ++ G + ++++E+ Sbjct: 599 CAFMETLNAQLQTRVQKLMERENSTEHYLHDLESRL-----DGHSTGEEKNSALVNELRK 653 Query: 627 QIHQIESQEA 636 +I + EA Sbjct: 654 EIARARENEA 663 >gi|114601367|ref|XP_001155070.1| PREDICTED: coiled-coil domain containing 100 isoform 1 [Pan troglodytes] gi|114601369|ref|XP_001155129.1| PREDICTED: centrosomal protein of 120 kDa isoform 2 [Pan troglodytes] Length = 986 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914 >gi|5032309|ref|NP_004012.1| dystrophin Dp140b isoform [Homo sapiens] gi|152012440|gb|AAI50142.1| Dystrophin [Homo sapiens] Length = 1243 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|62182796|ref|YP_219213.1| hypothetical protein SC4226 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62130429|gb|AAX68132.1| putative periplasmic binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322717298|gb|EFZ08869.1| Mechanosensitive ion channel MscS [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1108 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELKLAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRKQLNSLRQREA 237 >gi|296478393|gb|DAA20508.1| coiled-coil domain-containing protein 157 [Bos taurus] Length = 623 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 23/235 (9%) Query: 428 IRDRLQQLFQKYITEHSGYG-RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +L L + + E G R + Q Q + + + RE Sbjct: 234 CLGKLVGLLRAQLEEAEGQKDRLRMQVGELEQALQEEQAARQRQAQEAEQHRAQWERERQ 293 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 L + + +++ Q + S E ++ L E + E+ Sbjct: 294 --QLLAETSDLKTKVATLEGELKQQRESTQAVESKAQQLQAEAEHRLEAERQVQHLEQQV 351 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 L +LD + S + V + +L + R L +Q + ++++ ++ Sbjct: 352 ELLAGRLDGASQQIRWASTELDKEKARVDSMVRHQESLQAKQRALLQQLDSLDQEREELR 411 Query: 607 AKGEAEKTAILISI--------------------LHEVHIQIHQIESQEAMIEGF 641 + + + E+ ++ ++ +E ++ F Sbjct: 412 GSLDEAEAQRAHVEEQLQSVQGEREQATTDLRLTISELERELVELRERERLLVAF 466 >gi|253576026|ref|ZP_04853359.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844601|gb|EES72616.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 36/182 (19%) Query: 16 PISNLIGQYVDWDRRKTNAVKGDYWACCPF-HDEKTPS------FHCNDSKGFYYCFSCH 68 I ++ Q + ++ + + CPF H++ P N + C+ C Sbjct: 4 DILDVADQN-GLIIKPSSQSREEVLCKCPFCHEDSKPGKKRRYYLSLNTKDQVFKCWFCG 62 Query: 69 VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF 128 G L F+S L G P+ + +++ + +++ A Sbjct: 63 ESGGVLRFISLLEGV---------------------PEEQVRQRYRKR--KIVHPA---- 95 Query: 129 HHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGL 188 L + K L + + + + Y S L E + +E + L Sbjct: 96 -ERLSRNQRKLLRQHTGGKEPNWKLMRERDFAYYMRSMDLLWEQWNEFLETERQGAYLWL 154 Query: 189 LI 190 +I Sbjct: 155 II 156 >gi|223984563|ref|ZP_03634693.1| hypothetical protein HOLDEFILI_01988 [Holdemania filiformis DSM 12042] gi|223963468|gb|EEF67850.1| hypothetical protein HOLDEFILI_01988 [Holdemania filiformis DSM 12042] Length = 777 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 12/133 (9%) Query: 519 WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 + +++K E +R EL+++L+ Q+ + EA I Q Sbjct: 484 FEIARRFGLKEKIIREAEFLKRQQRSQEDELIEKLEAQILENQQLKEKQEALIAQTEQQR 543 Query: 579 QQALALYKRFRLLSRQK-----EEIEKQIAQVTAKGEA--EKTAIL-----ISILHEVHI 626 Q ++ ++ ++ +KQ+ +V A+GEA E+ + + E Sbjct: 544 QHLERELQKLSEEKQRILDAAEKQAQKQLEEVKAEGEALLEELRQSQKTMKLHEIIEKQH 603 Query: 627 QIHQIESQEAMIE 639 Q++ + EA +E Sbjct: 604 QLNALGKSEAQLE 616 >gi|5032313|ref|NP_004014.1| dystrophin Dp140bc isoform [Homo sapiens] Length = 1133 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|313683305|ref|YP_004061043.1| primary replicative DNA helicase [Sulfuricurvum kujiense DSM 16994] gi|313156165|gb|ADR34843.1| primary replicative DNA helicase [Sulfuricurvum kujiense DSM 16994] Length = 487 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 50/158 (31%), Gaps = 14/158 (8%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-- 541 E ++L ++I P+ + L + + Q+++ + S E + + L Sbjct: 11 ERSVLSSIIFDPSQFDDFDAVLTPEDFYLSAHQEIYRAMMSLAHRDLPIDEEFLRKELMA 70 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR------------FR 589 ++ ++ + A + E +++ KR Sbjct: 71 KQKFDERVMVDILTANPIANTKAYVQEIKDKAIKRHLLTLTTEIKRVTLEEELTGTDVVD 130 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 L+ ++ EI + K ++ + E+ + Sbjct: 131 LVEKKLYEITQSSQATDFKDAPSIADETLAYIEEMKAR 168 >gi|299469420|emb|CBH51820.1| DNA primase [Campylobacter fetus subsp. fetus] Length = 400 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 4/50 (8%) Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCS----FIESVQRL 92 DEKT S + G+ F +GD ++F + C F+E+ + L Sbjct: 30 DEKTASASIDPKNGYIKDFGSGFRGDVIAFYKEIKACDDKTAFLETKKIL 79 >gi|296230251|ref|XP_002760647.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 2 [Callithrix jacchus] Length = 1732 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ A ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|291490677|ref|NP_004011.2| dystrophin Dp140c isoform [Homo sapiens] Length = 1115 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|261245061|ref|NP_001159698.1| centrosomal protein of 120 kDa isoform 2 [Homo sapiens] Length = 960 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888 >gi|296822694|ref|XP_002850327.1| fibronectin type III domain-containing protein [Arthroderma otae CBS 113480] gi|238837881|gb|EEQ27543.1| fibronectin type III domain-containing protein [Arthroderma otae CBS 113480] Length = 1065 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 29/228 (12%), Positives = 71/228 (31%), Gaps = 4/228 (1%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L Y + EHSG K++ R G + + Sbjct: 140 PPLIQAYVPKAATIVSPSAPVMSREHSGGATPAKRSGGGRRSIGSASAQEHTVPQTLDDE 199 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + L L LQ++ + L + ++ E ++L L + K + E+ Sbjct: 200 EAAGNESEGSLKQLAERLKYLQQENEALDRQLSQEDKEYEQLLRELEDQRNDLKQRVKEK 259 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + +L+ R A E + ++ R+ + + + Sbjct: 260 DDA---SGDLRKHINKLESVNRTAQSEKIKREKLLQQKEAERKKRSEDIVRWDEKAIEIK 316 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKM 644 + + + A+ + E T + ++ + +++ + I+ G Sbjct: 317 DELTSLQEEKARIDEESTNKMEEYRRKIAEEQGEMKQIDEDIKIKGSS 364 >gi|84501333|ref|ZP_00999538.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola batsensis HTCC2597] gi|84390624|gb|EAQ03112.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Oceanicola batsensis HTCC2597] Length = 872 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 28/204 (13%), Positives = 65/204 (31%), Gaps = 4/204 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KY+ + + R ++ + +++ K +L + ++AL+ Sbjct: 319 YRKYVEKDAALARRFQPVMVEEPTVEDTISILRGIKEKYELHHGVRISDSALVAASTLSN 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + ++ L Sbjct: 379 RYITDRFLPDKAIDLVDEAASRLRMEVDSKPEELDQLDRNILQMQIEVEALK-LEDDEAS 437 Query: 556 QVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + R A A E +Q R L Q + + G+ + Sbjct: 438 KERLARQEKALAELQEKSAEMTAKWQAERDKLGEARELKEQLDRARADLEIAKRNGDLAR 497 Query: 614 TAIL-ISILHEVHIQIHQIESQEA 636 L I+ ++ Q+ + E QEA Sbjct: 498 AGELSYGIIPQLEKQLGEAEQQEA 521 >gi|296230249|ref|XP_002760646.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1 [Callithrix jacchus] Length = 1754 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ A ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|291280540|ref|YP_003497375.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1] gi|290755242|dbj|BAI81619.1| DNA mismatch repair ATPase MutS [Deferribacter desulfuricans SSM1] Length = 851 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 75/224 (33%), Gaps = 12/224 (5%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 L+ Q + R + + R L S V ++ + Sbjct: 320 FDQELKNNIQNLLKNVYDIERIASRLSAKRANARDLVWLKNSIKVLPEIKAYLINSNDPI 379 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-------YFLPEEIHQR 540 L L++ Y+ + D+ LQ + + R Sbjct: 380 LKEFGEQFDNLEDIYELIDKSIVDDPPLQITAGGIIKTGFNNHIDELKKVKDDSTTLLAR 439 Query: 541 LCERGFGEL-LKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + ++ + + L + + G + +++++ V + + L R ++ + +E+ Sbjct: 440 IEQKEREKTGITNLKVKYNKVFGYYIEVSKSHLSKVPDYFIRKQTLVNAERFITDELKEL 499 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ---EAMIE 639 E +I + +K + I I +V +I +I SQ A+++ Sbjct: 500 EVKILEAESKLTELEYQQFIEIREKVEKEIERIRSQANKIALLD 543 >gi|257053250|ref|YP_003131083.1| Protein of unknown function DUF460 [Halorhabdus utahensis DSM 12940] gi|256692013|gb|ACV12350.1| Protein of unknown function DUF460 [Halorhabdus utahensis DSM 12940] Length = 658 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 21/204 (10%), Positives = 67/204 (32%), Gaps = 23/204 (11%) Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQ 503 +++ S + L + + + + E L + H + Sbjct: 307 EKLRRSFDAAAWTPDSDLPVDEKLHRTREAATDNDHERDALAAALEAYDDHADQFERVAA 366 Query: 504 ELADIRYDNNELQKLW------SFLFSDFVEQ---KYFLPEEIHQRLCERG-----FGEL 549 ++ L ++ + D ++ E + L + Sbjct: 367 KVPPREEVGPVLARVVAGEESVESVLDDLADEEGEPAETSEHTPRELTAEEKQIKRLQDR 426 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 +++L+ V D T + I D+R + A + + R+ +E++ ++ + Sbjct: 427 VERLESHVEDLNETIETKDGTISDLRDKLESARSEQRAETRKRREVTRLERENDRLEREL 486 Query: 610 EAEKTAILISILHEVHIQIHQIES 633 +AE+ + ++ ++ ++++ Sbjct: 487 DAER-----ERVEDLEGKLERLKA 505 >gi|329663377|ref|NP_001193017.1| disks large homolog 5 [Bos taurus] gi|297491546|ref|XP_002698933.1| PREDICTED: discs, large homolog 5 (Drosophila) [Bos taurus] gi|296472061|gb|DAA14176.1| discs, large homolog 5 [Bos taurus] Length = 1920 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 33/331 (9%), Positives = 91/331 (27%), Gaps = 34/331 (10%) Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351 + + + L K V + D L + +L + Sbjct: 303 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQMEEENQRLLKQTEMLTQQRDTA 362 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + + + S R +L + D+ W+ E Sbjct: 363 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQAKTAKESEK 420 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 +D Y + +R Q + + + K + ++K S+ + Sbjct: 421 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKKAASEEMEALRQ 479 Query: 472 VK--GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 +K + + +EA +L + + L L E Sbjct: 480 IKDTVTMDAGRANKEAEILR-----------------------KQCKALCQELKEALQEA 516 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + +++ + D + + ++ + + K+ Sbjct: 517 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 573 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +SR+ +E+++Q+ + + + L++ Sbjct: 574 DVSRELKELKEQME--SQLEKEARFRHLMAH 602 >gi|114601371|ref|XP_517897.2| PREDICTED: centrosomal protein of 120 kDa isoform 3 [Pan troglodytes] Length = 960 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 619 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888 >gi|50547419|ref|XP_501179.1| YALI0B21384p [Yarrowia lipolytica] gi|49647045|emb|CAG83432.1| YALI0B21384p [Yarrowia lipolytica] Length = 738 Score = 46.0 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 7/248 (2%) Query: 393 RSFNTPDERAELEIHLKNCINHIKDQK----LRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 + E EL+ +++ I+D+ + + + Q + Sbjct: 169 ETMAPSHELKELKDEVESLKMAIRDRDGIIEEAESSLNQFSELVSRNEQLVSELEMKDRK 228 Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 ++ + + + + S + +E L + H + E E+ + Sbjct: 229 ISDLQNDVSSKRREFRDTIDALEAEYMHSSQEYQKEVEQLRANLGHAHTVNETIVEMESM 288 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 ++ S + +++ L +I RL E+ + + L + Sbjct: 289 VASLESGLRI-SKVNEQEAKERLGLMADIENRLLEKEQELAAVKERLDITKGQLGGGDGD 347 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI 628 + + + ++ LA KR L K E+ Q G++E+ + L E Q+ Sbjct: 348 SKLKEELDAVKKELAESKRE--LEAAKNEVTSQKTLSRDMGDSEELEEVKKQLAETKKQL 405 Query: 629 HQIESQEA 636 +++S +A Sbjct: 406 QELQSVDA 413 >gi|168263298|ref|ZP_02685271.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205347860|gb|EDZ34491.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1108 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|167553561|ref|ZP_02347310.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322009|gb|EDZ09848.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1108 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|121605125|ref|YP_982454.1| ATPase [Polaromonas naphthalenivorans CJ2] gi|120594094|gb|ABM37533.1| ATPase AAA-2 domain protein [Polaromonas naphthalenivorans CJ2] Length = 867 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 70/203 (34%), Gaps = 4/203 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++KYI + + R ++K + +++ K + + + A++ ++H Sbjct: 317 YRKYIEKDAALERRFQKILVGEPTVEATIAILRGLQEKYETHHGVQITDPAIVAAAELSH 376 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL- 553 I + I + K+ + S I ++ + Sbjct: 377 RYITDRFLPD-KAIDLIDEAAAKVKIEIDSKPEVMDRLDRRLIQLQIEREAVRREKDEAS 435 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 ++ + I D+ + +Q A + + + + I QI + T KG+ K Sbjct: 436 QKRFGLIEEEIGKLQKEISDMDEIWQAEKAQALGSKDVMEEIDTINTQIEEFTRKGDFNK 495 Query: 614 TAIL-ISILHEVHIQIHQIESQE 635 A L L E+ ++ Q + E Sbjct: 496 VAELQYGKLPELKKRLKQAQDTE 518 >gi|332019192|gb|EGI59702.1| Myosin heavy chain, non-muscle [Acromyrmex echinatior] Length = 2033 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 36/270 (13%), Positives = 96/270 (35%), Gaps = 7/270 (2%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + +L + PL+++ K+E + ++ ELE L + I++++ R + Sbjct: 919 QWWRLYTKVKPLLEVT-KQEEKLTQKEDELKQQELEEILHDLEARIEEEEERSAALTQEK 977 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +LQ + +K + Q + ++ L + + + L+E +L Sbjct: 978 KKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKILE 1037 Query: 490 TLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 N + + +E L+ ++ + + L L D +++ + Sbjct: 1038 ERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQEVDRSKRKVETEVS 1097 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E L + QV + L E + V + A + + R+ E ++ + Sbjct: 1098 DLKEQLAERKTQVEEMQLQLGKREEELNQVMAKMDEEGAAKAQAQKALRELESQLAELQE 1157 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E +++ ++ ++++ Sbjct: 1158 -DLEAEKAARGKAEKQKRDLNEELEALKNE 1186 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 24/226 (10%), Positives = 75/226 (33%), Gaps = 17/226 (7%) Query: 418 QKLRYYYSQAI---RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + R + + ++ + + + ++ + + + Sbjct: 1739 ENERDELQEEVNNNANKGTLMLDEKRRLEARIATLEEELEEEQSNAEIVMDRARKGQIVI 1798 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYF 532 + E + L +H +L+ Q +EL + + K + + + Sbjct: 1799 EQLTTDLATERSTTQKLESHKMLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNL 1858 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + ++ ++L++++++ L N ++ QA + R + L Sbjct: 1859 DEQLETEAKERFAQQKINRKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNVRMKALK 1915 Query: 593 RQKEEIEKQIAQ-------VTAKGEA--EKTAILISILHEVHIQIH 629 RQ +E E++I++ + + E L+ L + ++ Sbjct: 1916 RQLDEAEEEISRHKTMKRKAQREMDDITESHEELMRELTHLKNKLR 1961 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 93/278 (33%), Gaps = 32/278 (11%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 EK+ ++ +E+ + E+ LE + + +++ + + ++ Sbjct: 1002 QLEKVQCDAKIKKLEEDLALSEDTNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLK 1061 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-----LRE 484 + + + ++ R + + ++ L + K + RE Sbjct: 1062 AKHEATIADLEERLLKDHQQRQEVDRSKRKVETEVSDLKEQLAERKTQVEEMQLQLGKRE 1121 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L ++ + +E A L++L S L + + +R Sbjct: 1122 EEL-------NQVMAKMDEEGAAKAQAQKALRELESQLAELQEDLEAEKAARGKAEKQKR 1174 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E L+ L ++ D+ +A QQ L + ++ ++K + + Sbjct: 1175 DLNEELEALKNELLDSLDTTAA------------QQELRSKR-----EQELATLKKNLEE 1217 Query: 605 VTAKGE---AEKTAILISILHEVHIQIHQIESQEAMIE 639 T+ E A+ L ++ Q+ ++ +A++E Sbjct: 1218 ETSLHEATLADMRHKHTQELTALNEQMDALKKTKAVLE 1255 >gi|268598631|ref|ZP_06132798.1| replicative DNA helicase [Neisseria gonorrhoeae MS11] gi|268582762|gb|EEZ47438.1| replicative DNA helicase [Neisseria gonorrhoeae MS11] Length = 468 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|240112562|ref|ZP_04727052.1| replicative DNA helicase [Neisseria gonorrhoeae MS11] Length = 462 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E ++L ++ +PA ++ + +E + ++ + Sbjct: 2 PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + + + L ++L+ L + + Y + + Sbjct: 61 KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166 >gi|197265113|ref|ZP_03165187.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243368|gb|EDY25988.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 1108 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPTQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTEANIVDV--RQGYQQALALYKRFRL--LSRQKEEIE------ 599 L QL +Q DA E + QA +L + L +E+E Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGNAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 600 ---KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|168051256|ref|XP_001778071.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670510|gb|EDQ57077.1| predicted protein [Physcomitrella patens subsp. patens] Length = 538 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 115/381 (30%), Gaps = 35/381 (9%) Query: 286 LCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPG 345 AG + + A+ ++ + D GL+ D + Sbjct: 135 CAYAGAGRMDAICAEAIRAEPTFDVYGKEVIVFSNCDAGGDGLQLGSVCCDQNPYEIGRE 194 Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDML---WKRETENRSFNTPDERA 402 + + + + P R ++ LP + ++ R++ + + Sbjct: 195 KKNREAIRYQLKQPSMVERLDAIATETRVESTPLPSKQVEKVAIAECSQARNYERTNVNS 254 Query: 403 ELEIHLKNCINH-IKDQKLRYYYSQ-------AIRDRLQQLFQKYITEHSGYGRYWKKNA 454 + N + L YY + ++L IT+ Sbjct: 255 SSRELGRPSTNMAVTPPVLIEYYQRVDLSGAGQQAREFKELISAQITQLQMAVEKMDNEF 314 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP------AILQEQYQELADI 508 R ++++ K ++ S+ AL + + H +E + + Sbjct: 315 SLRQVLEEKDKIIEDQKKKIGDLQRASVM-DALKYSRLEHQFKETQAEWAKENKLAKSLM 373 Query: 509 RYDNNELQKLWSFL------FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 E +L + ++ + L ++ ++L +QL R++ + Sbjct: 374 ELTKQECMELRNQYQEEKNRMAELEAGRSKLEDDFRRQLESSKTEN--EQLKRRIAELEA 431 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 T +V L K+ L Q +E + QIA + ++ + L Sbjct: 432 EMITVTTQQGEVNPASTSLRELEKQVHALEEQLKERDTQIALLESQ---------VQELG 482 Query: 623 EVHIQIHQIESQEAMIEGFGK 643 ++ + + + E + EG G+ Sbjct: 483 ALNEDLTALLNGEQVGEGVGE 503 >gi|146310010|ref|YP_001175084.1| hypothetical protein Ent638_0345 [Enterobacter sp. 638] gi|145316886|gb|ABP59033.1| MscS Mechanosensitive ion channel [Enterobacter sp. 638] Length = 1103 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 32/214 (14%), Positives = 77/214 (35%), Gaps = 18/214 (8%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 + + K + + S + ++L + + S + + + ++ N P + Sbjct: 23 PDAKQITQELEQAKAAKPAQPETVESLQAALNALEERQGSLERAQQYQQVID---NFPKL 79 Query: 498 LQEQYQELADIRYDNNEL------QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 Q +L ++R + + L + + + ++ R + L Sbjct: 80 SQTLRSQLTNLRDEPRDAPLSMTSDALNQEILQVSSQLLEKSRQAQQEQERAREIADSLS 139 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE---------KQI 602 QL +Q DA E I Q L+L L Q +E+E +++ Sbjct: 140 QLPQQQTDARRQLNEIERRIGTQPGNTPQNLSLQAESAKLKAQVDELELAQLSANNRQEL 199 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 A++ ++ +++ L + L + Q++ +EA Sbjct: 200 ARMRSELAQKQSQQLDAYLQALRNQLNSQRQREA 233 >gi|5032293|ref|NP_004004.1| dystrophin Dp140 isoform [Homo sapiens] gi|133778296|gb|AAI27104.2| DMD protein [Homo sapiens] Length = 1225 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|118400729|ref|XP_001032686.1| Kinesin motor domain containing protein [Tetrahymena thermophila] gi|89287030|gb|EAR85023.1| Kinesin motor domain containing protein [Tetrahymena thermophila SB210] Length = 1284 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 35/322 (10%), Positives = 110/322 (34%), Gaps = 19/322 (5%) Query: 328 LRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVES-LPLVDMLW 386 I+ V+ R V GE + + + + + + + Sbjct: 664 REQILNKIEEVINENDASRRTVKVGGRNGESAEQYAERSSRNLRQLKEMLADQDFLIQEK 723 Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 ++ + ++ +++ EL L+ N IK++ R Y Q ++L++ ++ Sbjct: 724 RQRLKQKNKELREQQVELRNQLQYLENDIKEKDARVQYVQDQNEQLKEQIERDREIIQLK 783 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLS-----KKPSLREAALLLTLINHPAI---- 497 + ++ ++ ++ L + K E + + + Sbjct: 784 IDKEELLEKNDEELRELIDRLKIKLQRRKEECLMLKDNIDKVERDIYQQRVFYEEEKNSM 843 Query: 498 ---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQ 552 +++ D + N ++Q++ + ++ + L +++ + L + + + Sbjct: 844 VRQIKDLTNAYEDEKVRNQDIQRI-NENLDYQIDNQERLLKKLQEDLELSNKRYDNIQIM 902 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG--- 609 + + + + +A L + L R+ +E QI + + Sbjct: 903 YQEEQSLSKELKLAQAVYEKRIDEAEDRAQTLEVKLNKLKRRFQEERNQIVEEKDQELIK 962 Query: 610 EAEKTAILISILHEVHIQIHQI 631 + E TA L + + ++ ++ ++ Sbjct: 963 KKEATARLKNEIKDLERRVQEL 984 >gi|268558976|ref|XP_002637479.1| Hypothetical protein CBG19196 [Caenorhabditis briggsae] gi|187024443|emb|CAP36487.1| hypothetical protein CBG_19196 [Caenorhabditis briggsae AF16] Length = 2696 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 36/337 (10%), Positives = 97/337 (28%), Gaps = 28/337 (8%) Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +K + D ++ + + D S + Sbjct: 650 ENRFKYVQHKWTEWQMDKNSTTKVESVMEEIQMWQTD-----VLEFIGKVDNSSITKKEE 704 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 +K I DM + N +E+ L + ++IK + + Sbjct: 705 VEETQKRISSFKNAADMHKTTLETLKEENKNEEQISRINVLIDKNDYIKTRLDQLSQKVE 764 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + L+ + I + N Q ++ L + + L Sbjct: 765 LASLLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEHVRRKIEDLKVEVDKKSEHL 824 Query: 488 LLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 E + L+ + + + + EQ E+ ++L Sbjct: 825 ------------EACKTLSQNETFQTQLYKTIQN------QEQIRLTTLELQEKLEITKL 866 Query: 547 GELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +++++ + + + T ANI + + + L + S + +E++K Sbjct: 867 IRVVQEIQMWQEEAIEIIRMLDRTQPANIQEANELIDRVHDLQQTIEHKSSRIQEVKKMS 926 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + E+ + L + +++ + Q+ +++ Sbjct: 927 QVPEFVQKMEEVEHVQEQLKHLTVELEEKLEQQKLVK 963 >gi|70993434|ref|XP_751564.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293] gi|66849198|gb|EAL89526.1| DNA repair protein Rad50 [Aspergillus fumigatus Af293] Length = 1312 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 101/280 (36%), Gaps = 30/280 (10%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-------QKLRYYYSQAIR 429 ++ W R ++ + E + + +N +++ + + +A+ Sbjct: 726 RAVSTAYDTWTRLSKTEIPDLEKEEDQYALQRDELLNQLENHDKIVSEKIEKKRDVEALS 785 Query: 430 D------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM----QSSLVKGKLSKK 479 R + + ++ + N R + + + ++ +K LSK Sbjct: 786 KTVNTIVRYESEIKTIRSQIQDLSSNQQDNTATRTLEDIQEEIAGIGDKTRALKKTLSKL 845 Query: 480 PSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + RE A T +N+ + L++ +L ++++ L + + ++ E I Sbjct: 846 INDREQA--RTEMNNLELQLRDARSKLDNVKFQLERKSDLLARI-EEYKNLNNQQREAIT 902 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + +R EL +L + S EA +++QG Q RQ + Sbjct: 903 KA--DRDIEELTPELLKYQAQYDDISQRVEAREREMQQGISQLSERI-------RQLDLA 953 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 ++I +G + L + +I Q+E+++A I Sbjct: 954 TEEIDSYNERGGPSQLERSRRELQTIEAEISQLEAEQANI 993 Score = 37.2 bits (84), Expect = 9.9, Method: Composition-based stats. Identities = 25/227 (11%), Positives = 67/227 (29%), Gaps = 14/227 (6%) Query: 416 KDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK 475 D+ L+ Q +LQ Q+ + + + + + K Sbjct: 295 PDEWLQSNLEQFESKQLQYQQQEEAQKENYMEIKDRIEQARQKLGVKQAEYGKYENDKAN 354 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL------FSDFVEQ 529 ++ R+ +H + + D ++ ++K+ L + Sbjct: 355 FERQVERRQRMTREIARSHN---IRGFDNIQDQSDIDDFMRKIRKLLKEQNQALERVKRE 411 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E+ L E G + L A + + + + Sbjct: 412 AQTELREVQSTLNEIGQRK--SALQESKNAAKRQIGANDKEASNYQAKLNEIDVDEGVQA 469 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E+I ++ + ++A L + +++ ++H +E + A Sbjct: 470 AVEANIEDISSRLNHAK---DRARSASLDKEIQDMNSELHALEDEGA 513 >gi|322411795|gb|EFY02703.1| hypothetical protein SDD27957_05270 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 358 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 22/103 (21%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 P HD SF + FS ++GD + F+ + G +F E+V L Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL--------ETG 81 Query: 104 DPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDE 146 D + K +IE A F + L ++ YL+E Sbjct: 82 DFEQTK----------VIEEAYQPFQYYLHEEPFQQARTYLNE 114 >gi|300865770|ref|ZP_07110526.1| DnaB domain protein helicase domain protein [Oscillatoria sp. PCC 6506] gi|300336231|emb|CBN55679.1| DnaB domain protein helicase domain protein [Oscillatoria sp. PCC 6506] Length = 1060 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 3/116 (2%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L ++ P + + L + Q ++ + E K + L Sbjct: 11 AEEAILGGILIDPEAISRIAELLRPDFFAITAHQVIYKAALDLYFEGKPTDLMTLTTWLA 70 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 +R L+Q+ Q + A L T A +D + + ++ + ++ Sbjct: 71 DRNK---LEQIGGQSKLAQLAERTVSAVNIDQYAILVEDKHIRRKLIHAGNEIVQL 123 >gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera] Length = 1301 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 73/209 (34%), Gaps = 7/209 (3%) Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +LQ + I E +GPS R K K + + E + Sbjct: 572 KLQMIADDDIEEVFSACNIKGPIPSWNRTQGPSCRRRARDTNKLKKKQGIRISEMQQHMG 631 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 I + + Q Q + + +L + E L E + + + EL Sbjct: 632 NIQD-ELRKTQKQLYEAEEERDRAVDELRE-MKKVAQEANMRLSEALSSKRSGELYTELS 689 Query: 551 K---QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 L R+ L E+ +++ + L L +R + + K+E+ IA++T Sbjct: 690 AAKKSLSDATRELQLKEKGMESLRLELEKVQLVELKLAERDAAVDKLKKELN--IAKITE 747 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQEA 636 + + + + E+ ++ + ++ EA Sbjct: 748 SHTVDSLSESKARIQELERELEKKKNSEA 776 >gi|152974901|ref|YP_001374418.1| hypothetical protein Bcer98_1097 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023653|gb|ABS21423.1| conserved repeat domain [Bacillus cytotoxicus NVH 391-98] Length = 743 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 75/254 (29%), Gaps = 10/254 (3%) Query: 391 ENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYW 450 E+ S + K ++ + D + I+ Q L ++ T+ + Sbjct: 347 ESHSILHNETSKTEIDAAKEKVSQLPDNSNKTELLNEIKKAQQLLKEREATQLKNAQQAV 406 Query: 451 KKNARHRDQKGPSQRLMQSSLVKGKLSKKP--SLREAALLLTLINHPAILQEQYQELA-- 506 + L + + + K + +L E +L I L E Sbjct: 407 NALFSDDKHTILNDSLTEKEIKEAKQKVELVSNLPEKEVLQKEIERAEHLLNVLNETRKN 466 Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 D + + L + ++ +++ L+K++++ Sbjct: 467 VDSLFTDRFHTALKETITQVDIDNVKIKVDQLSD---NNDRQTLIKEIEKAQNLFNATQT 523 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 N A +++ +I+ A+V + E L+ + + Sbjct: 524 LKLQNAQKAINDLFTANDHNTLKANITQ--ADIDASKAKVDQLPDTEDKTNLLDEIKKAQ 581 Query: 626 IQIHQIESQEAMIE 639 +++ + ++E Sbjct: 582 RLFSELQKAQELLE 595 >gi|296230255|ref|XP_002760649.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 4 [Callithrix jacchus] Length = 1699 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ A ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|303310557|ref|XP_003065290.1| spindle associated family protein [Coccidioides posadasii C735 delta SOWgp] gi|240104952|gb|EER23145.1| spindle associated family protein [Coccidioides posadasii C735 delta SOWgp] Length = 1616 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 25/220 (11%), Positives = 65/220 (29%), Gaps = 18/220 (8%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++RL ++ + GR ++ +Q S G + + S E L Sbjct: 755 KERLYHEIEELKLQRRFDGRSIAGDSIFERSASRAQDRSASRASDGTRASRMSDTERESL 814 Query: 489 L------------TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + + + + +++I + Q + E + E Sbjct: 815 ETKNGELRDQVSTLKLENQGLRAQLDEYMSEIETMDRAYQ---EDMDQAEEEVQTLQLER 871 Query: 537 IHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L E EL + + + ++ + + R L + Sbjct: 872 DQAMHLAEEREAELQDLKAEAQEEINALEDELDLKTDEGQRMEAELRNQQENLRALQAEM 931 Query: 596 EEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIHQIES 633 + I ++ A+ +K + L + + ++ +E Sbjct: 932 RSANEGILRLEEDAQNNLQKYKAVQQELEDANRELEALEK 971 >gi|325953892|ref|YP_004237552.1| hypothetical protein Weevi_0252 [Weeksella virosa DSM 16922] gi|323436510|gb|ADX66974.1| hypothetical protein Weevi_0252 [Weeksella virosa DSM 16922] Length = 1277 Score = 45.6 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 44/303 (14%), Positives = 106/303 (34%), Gaps = 16/303 (5%) Query: 343 IPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERA 402 I G R ++ + P + KT + ++ K EN E+ Sbjct: 617 IQGIRDKINSPTKTKTPANSSTGTTKTKSKTHSGRTVDPNKEALKVIEENYKTELEKEKQ 676 Query: 403 ELEIHLKNCINHIKDQKL-RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 LE K + ++++++ R Y++ ++D K + Y + + + +++ Sbjct: 677 ALEKIRKEKLTALQNEEIDRITYNEKMQDITDSHNAKLLLLEINYAKQRIQYIKGAEKEA 736 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS- 520 R+ + LS R + LI+ ++ ++ +L+ + E++ + Sbjct: 737 SQTRIAEIQNSIIDLSTALKERAEKEIKALIDSQRVIDDELFKLSAESL-DKEIKNIQKG 795 Query: 521 ---FLFSDFVEQKYFLP--EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 L S K + ++ L +++ E + V+ Sbjct: 796 TDVQLESIDERNKELIRKHAKLTDDLNNPELSA--NAIEQLKLVEEAQKKNEELRLKVVK 853 Query: 576 QGYQQALALYKRFRLLSRQKEEIE----KQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ R + + + +E+E +I T K +AE + L E ++ +I Sbjct: 854 DSEKRIRE--TRLKYVLEEIKELENLAVSRIDHYTEKEQAEFDKKYLDKLRENENELEKI 911 Query: 632 ESQ 634 +Q Sbjct: 912 RNQ 914 Score = 43.3 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 100/288 (34%), Gaps = 24/288 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 S I +G+++F+ L+ VD K + + ++R EL + + I ++ Sbjct: 349 FSAIGSHGQSSFQGLLNSVKETVDWFTKMIETSPVDSLREQRNELNLLVGQLIIANNQEE 408 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 +R I + + E S + + + RL S + +++++ Sbjct: 409 VRSSLMSEIASKYPEYLNLIDAERSSTEQLSSALSVLNQEYENKIRLALISEEQNRITEE 468 Query: 480 PSL---REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL-PE 535 + ++ + L+ P + + Y E++ +E Q++ + + V+ K Sbjct: 469 QTRLIGKQREAIKALL--PELAKYGYTEVSFSALSPSEQQRVGNQILKKSVQNKGEDLIN 526 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 E+ E L ++ + W N ++ Q Sbjct: 527 ELSTSTREFAGERNLNKVKQASEFQKNWENFNSINEKLNKERLHQI-------------- 572 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQ---IHQIESQEAMIEG 640 ++ + KG E A L + Q +QI +QE +I+G Sbjct: 573 -KLTNAQNESYIKGLKETLAQEEEELKLMKKQGANQNQILAQEKLIQG 619 >gi|221503857|gb|EEE29541.1| conserved hypothetical protein [Toxoplasma gondii VEG] Length = 2595 Score = 45.6 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +K L D ++RE E+ + E +K+ + Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEKA 1567 Query: 423 YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 QA+ +R L++ FQ + + R QK + L + Sbjct: 1568 --KQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625 Query: 481 SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527 R L L + + + ++L A I E + L + Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLQETR 1682 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + + E+ + ++D+ R + + + ++ LA + Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740 Query: 588 FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637 ++ +++ K + E + E+ + + +++++ + Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799 >gi|148922230|gb|AAI46658.1| CGN protein [Homo sapiens] Length = 771 Score = 45.6 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 29/208 (13%), Positives = 75/208 (36%), Gaps = 11/208 (5%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491 Q+ + G K +D + L + K ++ ++ LRE L L Sbjct: 438 QVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALKGA 497 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + + ++L + + E ++ L + Sbjct: 498 LKE-EVASRDQEVEHVRQQYQRDTEQLRRSMQDATQDHAVLEAE---RQKMSALVRGLQR 553 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIAQVT- 606 +L+ + G W + + N D+R Q+ L L + L + E +++++ Q Sbjct: 554 ELEETSEETGHWQSMFQKNKEDLRATKQELLQLRMEKEEMEEELGEKIEVLQRELEQARA 613 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634 + G+ + +L L ++ +++++ Sbjct: 614 SAGDTRQVEVLKKELLRTQEELKELQAE 641 >gi|124004243|ref|ZP_01689089.1| replicative DNA helicase [Microscilla marina ATCC 23134] gi|123990313|gb|EAY29812.1| replicative DNA helicase [Microscilla marina ATCC 23134] Length = 492 Score = 45.6 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 11/129 (8%) Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + + EA L LI PA + + L + ++++ + F + Sbjct: 13 PPQAIDIEEAVLGAILIEQPAFM-QVIDLLQPDYFYKPAHKEVYQAILELFAQANPVDML 71 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + Q+L + G +L+ + T+ N + + L + + R+ Sbjct: 72 TVTQQLRQTG------KLEMAGGPTFVMKLTSMVNSSANIEYHAHILV----EQAIKRRL 121 Query: 596 EEIEKQIAQ 604 EI +I + Sbjct: 122 IEISSKIRK 130 >gi|39938822|ref|NP_950588.1| hypothetical protein PAM_336 [Onion yellows phytoplasma OY-M] gi|39721931|dbj|BAD04421.1| hypothetical protein [Onion yellows phytoplasma OY-M] Length = 158 Score = 45.6 bits (106), Expect = 0.022, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 21/133 (15%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDY----WACCPFHDEKTPSF-HC 55 MNY ++ IK + H P+S V + N + ++ CP H K P+ H Sbjct: 1 MNY-QEKIKHIQTHFPMS------VLLKK--LNIIPPNFNINHRFPCPIHQGKNPTCCHL 51 Query: 56 NDSKGFYYCFSCHVKGDHLSFLSALLGC-SFIESVQRLAAIAG-VPLPVVDPKIEKKEKI 113 +C+ C D + A+ SF E++Q++A ++ + ++ KI Sbjct: 52 TSDNKI-HCWKCCKDYDIIDVYMAIRQIKSFHEAIQKIAGFMNSFEFKALNKQEKEITKI 110 Query: 114 Q----TDLIRLIE 122 L + ++ Sbjct: 111 TINPLKQLYQPMK 123 >gi|296230253|ref|XP_002760648.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 3 [Callithrix jacchus] Length = 1719 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWS---ATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ A ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAARQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|293359999|ref|XP_216738.5| PREDICTED: spectrin repeat containing, nuclear envelope 2, partial [Rattus norvegicus] Length = 3832 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 33/279 (11%), Positives = 82/279 (29%), Gaps = 18/279 (6%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P+ + L + + + N D + ++ +LK C + + Sbjct: 1814 PELSELKKQYASVSNLFNTKKNALQDHFATFLNEQCKNFNDWFSNIKTNLKECFEPPETK 1873 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 Q + D L + K + ++S ++ + + Sbjct: 1874 LSMEQKLQKLSDFLTLGGGNSKIQQVETVLQHVKMLLPKAHVKELDSWLRSQELELENME 1933 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + Q L + + L +L + K Sbjct: 1934 SVCQA---------RAGELTSSFQQLLRLED----DCRSLSKWLTNHEENWKEVEASGER 1980 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + ++ ++ A L + E + + + +++ L R++ L RQ EI Sbjct: 1981 TDLFSQVLT---RKREQFETVAQLTDSLKELGLTEGEETIKESTHLIDRYQTLLRQLREI 2037 Query: 599 EKQ--IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 E++ + + + +I + E+ + + S E Sbjct: 2038 EEESNLPAAEDQSFNDLAHDVIHWIKEIKESLMALNSSE 2076 >gi|242025142|ref|XP_002432985.1| myosin-18A, putative [Pediculus humanus corporis] gi|212518494|gb|EEB20247.1| myosin-18A, putative [Pediculus humanus corporis] Length = 1601 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 33/275 (12%), Positives = 80/275 (29%), Gaps = 17/275 (6%) Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR--- 429 L + D+ +L K + D + + Sbjct: 1000 ALYKNKCERTMRELEFTRRRLQQQHEDDLEQLVGLKKQLEKKLADAYEEVEEQRQVAGQW 1059 Query: 430 ----DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 +LQ + + + +L+Q L K K+ RE Sbjct: 1060 KRKVQKLQSEMNDLRLLLEEQSSRNNLLEKKQRKFDSEIQLLQEELRSEKNQKERLSREK 1119 Query: 486 ALLLTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQ---- 539 + +++ ++ + +L L L ++ + Sbjct: 1120 EMAYA---EKYSMEQNLSSFRLELELKDEKLLSLTQELEEFSRGGGSEQEITQLRKAKHD 1176 Query: 540 -RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + + E L +L QV E ++ +R+ +++ +A SR + Sbjct: 1177 LEIKLKEQEEELDELAGQVSMLEGNKLRLEMSLESLRKEHRREIAQRDDELDESRSNTQK 1236 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++ + + E E+ +L+ HE+ ++ E Sbjct: 1237 KIKVLEAQLESEHEERTLLVREKHELERRLADAEE 1271 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 44/340 (12%), Positives = 95/340 (27%), Gaps = 21/340 (6%) Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE-------DPDSFI 363 + I D D K I ++ L + +L+ D + Sbjct: 1214 KEHRREIAQRDDELDESRSNTQKKIKVLEAQLESEHEERTLLVREKHELERRLADAEERG 1273 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + L+ L + + + L+ N ++D +L Sbjct: 1274 RHNKAADEDALLRARRDLKKTKALLRDAQIMLERAKQDSPSKAALRALKNQLEDVELARA 1333 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGR-YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + L + R R + + L + + Sbjct: 1334 SAVKAKQSLDSELNEVNGLLEEAIRAKGDAENRCQAALRETNALRMQVEENEEELAELLK 1393 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP-EEIHQRL 541 + ++ L QE LA+ + L++ + L + P + Q+ Sbjct: 1394 KYRQIVQQLSAEQLANQETAGALAEAEVERASLKEQLAELSARLEANAVLDPLSGLAQKK 1453 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF-------RLLSRQ 594 E EL +LD + G +V + + + + R L R Sbjct: 1454 LEIRIKELESRLDLEQTTRGRLEVQITRLKENVERLNEDCIQARTKEQGATDTARKLQRT 1513 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E ++++A+ AK + E+ ++ E + Sbjct: 1514 LRETKEELAKHQAKE-----QEALHKRKELEKRLETAEQE 1548 >gi|254468953|ref|ZP_05082359.1| replicative DNA helicase [beta proteobacterium KB13] gi|207087763|gb|EDZ65046.1| replicative DNA helicase [beta proteobacterium KB13] Length = 458 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 + S+ K +L E +LL L+ L + ++ + + Q ++ + Sbjct: 1 MADDSINKLRLPPHSLEAEQSLLGGLLIDNEALDKVADIVSVTDFYRQDHQIIYQHIHRL 60 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE----ANIVDVRQGYQQA 581 + + + L + L+ A A I+ R + Sbjct: 61 IERSQPADIVTVGESLESNSELNTVGGLEYLGLLAESTPTAANIRGYAQIIRERSIMRNL 120 Query: 582 L---------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 + AL + R + +E E +I Q+ G+ ++ + + E+ Q+ + Sbjct: 121 VEVGTDIVDNALSPQGRDAQQLLDESESKIFQIAEAGKNDRIG--FTDIKELLPQVAE 176 >gi|189467288|ref|ZP_03016073.1| hypothetical protein BACINT_03674 [Bacteroides intestinalis DSM 17393] gi|189435552|gb|EDV04537.1| hypothetical protein BACINT_03674 [Bacteroides intestinalis DSM 17393] Length = 318 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 5/56 (8%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 Y ++ N W P +E SF N + +Y F+ G+ ++ Sbjct: 20 YSPVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQE 70 >gi|221485765|gb|EEE24035.1| conserved hypothetical protein [Toxoplasma gondii GT1] Length = 2595 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +K L D ++RE E+ + E +K+ + Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEKA 1567 Query: 423 YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 QA+ +R L++ FQ + + R QK + L + Sbjct: 1568 --KQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625 Query: 481 SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527 R L L + + + ++L A I E + L + Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLQETR 1682 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + + E+ + ++D+ R + + + ++ LA + Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740 Query: 588 FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637 ++ +++ K + E + E+ + + +++++ + Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799 >gi|300795933|ref|NP_001179715.1| cingulin [Bos taurus] gi|297472708|ref|XP_002686087.1| PREDICTED: cingulin [Bos taurus] gi|296489602|gb|DAA31715.1| cingulin [Bos taurus] Length = 1194 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 74/236 (31%), Gaps = 35/236 (14%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q + +R + Q+ E + R R + + K K + P + Sbjct: 400 LQELLERRKGEAQQSTKELQNMKLLLDQGERVRHG---LETQVMELQDKLKQAHGPEAAK 456 Query: 485 AALLLTLINHPAILQEQYQ----ELADIRYDNNELQKLWSFL----------FSDFVEQK 530 L+ LI +L+E + +R EL L L +Q Sbjct: 457 EVLMKDLIETRELLEEVLEGKQRVEEQLRLRERELTALKGALKEEVASRDQEVEHVRQQY 516 Query: 531 YFLPEEIHQRLCE----------------RGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 E++ + + + L K+L+ + G W + N ++ Sbjct: 517 QRDTEQLRRSMQDVTQDHAALEAEKQKMSALVRGLQKELEETSEETGHWQNMFQKNKEEL 576 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R QQ L L L + E + + + G+A A + E+ ++ + Sbjct: 577 RATKQQLLQLRMEKDELEEELGEKIEALQR--ELGQARTGAGDTRQVEELKKELRR 630 Score = 39.5 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 86/267 (32%), Gaps = 24/267 (8%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 W E E S + E + + D+ + + RLQ L Q+ + Sbjct: 886 KEWASEAEKTSGGLSRLQDETQRLRQALQASQADRDTARLDKELLVQRLQGLEQEAENKK 945 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA----ALLLTLINHPAILQ 499 ++ ++ + + +L R L L+ + Q Sbjct: 946 RSQDDKSRQLKSLEEKVSRLEAELDEEKSTVELLTDRMNRGRDQVDQLRTELMQERSARQ 1005 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + + + N +L+ + + P +L + EL ++L + R+ Sbjct: 1006 DLECDKISLERQNKDLKS------RLASSEGFQKPSASLSQLESQN-RELQERLQAEERE 1058 Query: 560 AGLWSATTEANIVDVRQGYQQALA-----------LYKRFRLLSRQKEEIEKQIAQVTAK 608 + +T V++ Q L R + L RQ +E E++I ++ + Sbjct: 1059 KTVLQSTNRKLERRVKELSIQIDDERQHVNDQKDQLSLRVKALKRQVDEAEEEIERLDSL 1118 Query: 609 GEAEKTA-ILISILHE-VHIQIHQIES 633 + + ++E + +I +E Sbjct: 1119 RKKAQRELEEQHEVNEQLQARIKALEK 1145 >gi|57867493|ref|YP_189156.1| hypothetical protein SERP1591 [Staphylococcus epidermidis RP62A] gi|57638151|gb|AAW54939.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A] Length = 370 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 39/347 (11%), Positives = 84/347 (24%), Gaps = 49/347 (14%) Query: 53 FHCNDSKGFYYCF-SCHVKGDHLSFLSALLGC-----SFIESVQRLAAIAGVPLPVVDPK 106 + ++C+ C D + + L SFI+ + L I + + Sbjct: 51 LYYYPETQLFHCYTGCG-SFDVFTLIEKRLKMEGKAHSFIDCITTLGKILEINI----NL 105 Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166 K + IQ + ++ + D+ + K + + +ER + K Sbjct: 106 TSKVKGIQKSVKKIHDW--DWLNKIQKKEKVQPQLKIHNERILTYFDEIYPKA------- 156 Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226 L Y + P G +I R Sbjct: 157 --------------WYQAGISLETMEKYQIKFYPEMFQTV-IPHHDHEGNLIGIRSRNWD 201 Query: 227 KGESVKYLNSPETI-----LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYM 281 K K P I G LY + + + + + S + Sbjct: 202 KEFVKKAKYIPTYINDTGYNHPLGYALYGLYQNKEAIIQRKKAMIVEGEKSCLF------ 255 Query: 282 DVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCH 341 + V LL +++ D + + + Sbjct: 256 -SDTFYGEDNFVVAICGSNMSKYQAELLLNLGIEEVIIAIDKEYMQVDTPEFDEYMKKVK 314 Query: 342 LIPGNRVNFVLLSRGEDPDSF--IRCYGKTAFEKLIVESLPLVDMLW 386 I ++ D + + A + + E + + + Sbjct: 315 KIGKLFAPYIQTYHLTDTNGVLNYKDSPLDATKSELEEMMKVDKHIL 361 >gi|9630256|ref|NP_046683.1| hypothetical protein SPBc2p131 [Bacillus phage SPBc2] gi|16079095|ref|NP_389918.1| hypothetical protein BSU20360 [Bacillus subtilis subsp. subtilis str. 168] gi|221309942|ref|ZP_03591789.1| hypothetical protein Bsubs1_11246 [Bacillus subtilis subsp. subtilis str. 168] gi|221314264|ref|ZP_03596069.1| hypothetical protein BsubsN3_11167 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319186|ref|ZP_03600480.1| hypothetical protein BsubsJ_11093 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323462|ref|ZP_03604756.1| hypothetical protein BsubsS_11222 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342020|sp|O31904|YORJ_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized protein yorJ gi|2634429|emb|CAB13928.1| putative DNA replication initiation protein; phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025609|gb|AAC13104.1| unknown [Bacillus phage SPbeta] Length = 378 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 92/320 (28%), Gaps = 61/320 (19%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKT------NAVKGDYWACCPFHDEKTPSF- 53 M Y + + + I ++ + + Y C H+ S+ Sbjct: 1 MKYDK---DRVKESLTIEDI---HKILKDLGSENNLWDQQGNPIYRTVC--HNASGGSYK 52 Query: 54 --HCNDSKGFYYCFS-CHVKGDHLSFL-----SALLGCSFIESVQRLAAIAGVPLPVVDP 105 + +++K ++C++ C D + + SF ++++ +A IAG Sbjct: 53 LYYYHEAKQ-FHCYTECGDNFDVFELVIRAKSQKGINISFNQAIEYVAKIAG----RTFG 107 Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 ++ I DLI D + + P Sbjct: 108 FGNRETYINNDLID-------------------------DWEWMGKFKKKKKIHIELPSF 142 Query: 166 RYSLREHLRQKGFSEEKII-EAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRT 224 ++ + + + + + P R ++I R+ Sbjct: 143 NETVLDVFVPYPHQLWLGEGISHKTLKEFEIGYYFRPHTEGITIPHRDLNNRLIGIRRRS 202 Query: 225 LSKGE-SVKYLNSPETIL-----FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 + K E Y P + NLY N +++ +K + S ++ + Sbjct: 203 MIKEEVDAGYKYMPLKVGNILYNHQTMMNLYGLHKTKNSIER-FKKVLIFESEKSVLKCQ 261 Query: 279 GYMDVLSLCQAGVQNVVSSL 298 + + A + +S+ Sbjct: 262 DFYGESNFTCAVCSSNISNF 281 >gi|255065872|ref|ZP_05317727.1| replicative DNA helicase [Neisseria sicca ATCC 29256] gi|255049783|gb|EET45247.1| replicative DNA helicase [Neisseria sicca ATCC 29256] Length = 445 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 12/159 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ++L L+ + + + +E + ++ + + E + + + L Sbjct: 3 AEQSVLGGLLLENSAWDRIADVVTGEDFYRHEHRLIFRAIANLINESRPADVITVQESLE 62 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++L+ L + + Y + + R R + RQ E+ +I Sbjct: 63 RN------EELEAAGGFNYLITLAQNTPSAANIRRYAEIV----RERSIMRQLAEVGTEI 112 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 A+ + L+ QI ES +GF Sbjct: 113 ARSAYNPQGRDAGQLLDEAENKVFQIA--ESTAKSKQGF 149 >gi|224051645|ref|XP_002200595.1| PREDICTED: similar to golgi autoantigen, golgin subfamily a, 5 [Taeniopygia guttata] Length = 736 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 33/213 (15%), Positives = 82/213 (38%), Gaps = 8/213 (3%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +R ++ E + K + Q+ + + +++ K SL+E + Sbjct: 400 VAERKYLDEKRRADELQQQVKITKSHLESAKQELTDYKQKATRILQSKEKLINSLKEGSG 459 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + L ++ A E + + E+QKL + E + +++ + Sbjct: 460 IEGLDSNTASTVELEELRHERDTQREEIQKLMGQIQQMRAELQDMETQQVSEA---ESVR 516 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEKQIAQVT 606 E L+ L Q+ + EA + +Q + LY+ L + ++ E++I ++ Sbjct: 517 EQLQDLQEQISAHKMAKQEAEAELERQKQELRYTEEELYRTKNTLQSRIKDREEEIQKLR 576 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + E+ ++HQ+ E +I+ Sbjct: 577 NQLTNKTLSSSSQ--TELENRLHQL--TETLIQ 605 >gi|237835277|ref|XP_002366936.1| viral A-type inclusion protein repeat family [Toxoplasma gondii ME49] gi|211964600|gb|EEA99795.1| viral A-type inclusion protein repeat family [Toxoplasma gondii ME49] Length = 2595 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 35/299 (11%), Positives = 88/299 (29%), Gaps = 31/299 (10%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +K L D ++RE E+ + E +K+ + Sbjct: 1508 RMVEETEELQKRYENELQHRDDGYRRELEDNQGRLQEMLKEANERADAANKKVKEANEK- 1566 Query: 423 YYSQAIRDR--LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 QA+ +R L++ FQ + + R QK + L + Sbjct: 1567 -VKQALSERAALEKSFQAEMENMKKQHQTELTQIRESFQKEAEKSKKNLQLQRSLSIDGM 1625 Query: 481 SLREAALLLTL------------INHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFV 527 R L L + + + ++L A I E + L + Sbjct: 1626 KRRHQQELAALRADSQTALSAAKLEYESAAASHEEKLKAAIESVKKEYE---EALLKETR 1682 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + + E+ + ++D+ R + + + ++ LA + Sbjct: 1683 ENEKLKKQHTAE--VEKLSQSQVGKIDQHRRQSEHVIEELKKRHAAELEEMKERLAKSTQ 1740 Query: 588 FR--LLSRQKEEIEKQIAQVTAKGEAE-------KTAILISILHEVHIQIHQIESQEAM 637 ++ +++ K + E + E+ + + +++++ + Sbjct: 1741 DYTAMVQELRDKAAKALNDAQKAHLEEIEKLKSKSKEQEEAHRREIALSMQELQTERGL 1799 >gi|195586613|ref|XP_002083068.1| GD24899 [Drosophila simulans] gi|194195077|gb|EDX08653.1| GD24899 [Drosophila simulans] Length = 1771 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1404 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1463 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1464 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1523 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1524 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1580 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1581 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1640 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1641 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1700 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1701 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1739 >gi|183985668|gb|AAI66177.1| LOC100158525 protein [Xenopus (Silurana) tropicalis] Length = 1601 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 95/265 (35%), Gaps = 22/265 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + E E ++ ELE L++ +++++ R Q + ++Q Q + Sbjct: 909 ETELFAEAEEMRARLAIKKQELEEILRDLEIRMEEEEERNQVLQNEKKKMQAHVQDLEEQ 968 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + + M+ ++ + L+E LL + E Sbjct: 969 LDEEEAARQKLQLEKVTAEAKIKKMEEDILVLEDQNSKFLKEKKLLE------ERIAEST 1022 Query: 503 QELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLK 551 +LA+ L KL + +E++ E+ Q L + + + Sbjct: 1023 SQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA 1082 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 +L Q+ + L A E +++ + + + E++ QIA++ E+ Sbjct: 1083 ELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKNNTLKVVRELQAQIAELQEDLES 1139 Query: 612 EKTAILISILH--EVHIQIHQIESQ 634 EK + + ++ ++ ++++ Sbjct: 1140 EKASRNKAEKQKRDLSEELEALKTE 1164 >gi|171911010|ref|ZP_02926480.1| hypothetical protein VspiD_07540 [Verrucomicrobium spinosum DSM 4136] Length = 1354 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 LKQ +++ + A + Q + L +R L+ + +E+E Q+ Q +G Sbjct: 670 LKQQEKRYEEEKAAGEEKTAAQQENLQVLARLKELARRQEALAEKIKEVENQLQQAKTEG 729 Query: 610 EAEKTAILISILHEVHIQIHQ 630 + ++ + L E Q+ + Sbjct: 730 QKQELEQQLKRLQEEQEQLLK 750 Score = 38.3 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 27/213 (12%), Positives = 69/213 (32%), Gaps = 16/213 (7%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + R + L +K I E + K + ++ + +RL + K L+E Sbjct: 701 LKELARRQEALAEK-IKEVENQLQQAKTEGQKQELEQQLKRLQEEQEQLLKDLD--DLKE 757 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-------FVEQKYFLPEEI 537 ++ P QE + ++++ L + E++ Sbjct: 758 R------MDRPENQANMAQEREQLDQAREQVREAADQLAQQQTGSAASAATKAQENLEKV 811 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 ER +++ + ++ ++ E + + R Q +E Sbjct: 812 RDEFRERTARRFAEEMKQLKQETADLASQQEKLAEQIAGQAAPQDQNKGKGRESKDQVDE 871 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 +++++ +AE + L E Q+ + Sbjct: 872 LKERLQANQVSRQAETQRESLEKLMEQMRQLSE 904 >gi|268530746|ref|XP_002630499.1| Hypothetical protein CBG11240 [Caenorhabditis briggsae] Length = 1073 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 5/111 (4%) Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P ++ + ++L + R + + + + L+L + + Sbjct: 477 VQPNDMISLMQSTFEQQILAERQRLAEEHNRRMQEEAEKMAKFHEAMYRQLSL--QQEMS 534 Query: 592 SRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +Q E E + + + +AE ++ ++ ++ ++E + A IE Sbjct: 535 QQQIREQELALQRHREELEKRDAELKREALARQQQIEMEAREVEQRRAAIE 585 >gi|15616591|ref|NP_244897.1| replicative DNA helicase [Bacillus halodurans C-125] gi|10176654|dbj|BAB07748.1| replicative DNA helicase [Bacillus halodurans C-125] Length = 454 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 62/184 (33%), Gaps = 12/184 (6%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 S L + + E A+L + L + LA + Q+++ + + Sbjct: 2 SDLFADRTPPQNIEAEQAVLGAIFLEDHALVTASERLAPEDFYRAAHQRIYQVMLDLAEK 61 Query: 529 QKYFLPEEIHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQ 580 + + L +R G L L V A ++ +R+ + Sbjct: 62 GEPVDLVTVTAELQDRKALDDVGGVAYLGDLANAVPTAANVEYYSKIVEEKSLLRRLIRV 121 Query: 581 ALALYKRFRLLSRQ----KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 A + + + ++ EK I V + + + +L E + +I +++Q+ Sbjct: 122 ATNIAQEGYASEEEVDAILDDAEKTILDVAQRKNSSAFISIKDVLVETYDKIEMLQNQKG 181 Query: 637 MIEG 640 I G Sbjct: 182 EITG 185 >gi|332256080|ref|XP_003277145.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XVIIIa-like [Nomascus leucogenys] Length = 2041 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 34/284 (11%), Positives = 96/284 (33%), Gaps = 20/284 (7%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + + L +++ + E E++ ++ L+ + + DQ R Sbjct: 1608 RDEEVEEARQSCQKKLKQMEVQLEEEYEDKQKVLREK-----RELEGKLATLSDQVNRRD 1662 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + RL++ ++ + K +L L + + + +++ Sbjct: 1663 FESE--KRLRKDLKRTKALLADAQLMLDHLKNSAPSKREIAQLKN-QLEESEFTCAAAVK 1719 Query: 484 EAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR-- 540 + I + + + + + LQ+ + + + E + + E + + Sbjct: 1720 ARKAMEVEIEDLHXQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQEDMNELMKKHKL 1779 Query: 541 --LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L ++ L++ + D + S E I ++ + KR L+ + +E Sbjct: 1780 LWLSTPPLQSQVEFLEQSMVDKSMVSRQ-EVKIRELETRLEFERTQVKRLESLASRLKEN 1838 Query: 599 EKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++ + E E L L + ++ ++ +EA Sbjct: 1839 MEKLTEERDQRIAAENREKEHNKRLQRQLRDTKEEMGELARKEA 1882 Score = 37.2 bits (84), Expect = 8.2, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 89/292 (30%), Gaps = 36/292 (12%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 + ++ VD KR + E+ + + D + Q ++ Sbjct: 1385 EWRLKYERAVREVDFTKKRLQQEFEDKLEVEQQNKRQLERRLGDLQADSEESQRALQQLK 1444 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + Q+L + +N + + + + KL ++ RE Sbjct: 1445 KKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKLQREKLQREKD 1504 Query: 487 LLLT-------LINHPAI-----------LQEQYQELADIRYDNNE-LQKLWSFLFSDFV 527 +LL + + L+ + Q+++ + L K+ L Sbjct: 1505 MLLAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEA 1564 Query: 528 -----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ------ 576 E++ Q L + L +++R + + + + + RQ Sbjct: 1565 KVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERMRQTHSKEMESRDEEVEEARQSCQKKL 1623 Query: 577 --GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 Q Y+ + + R+K E+E ++A ++ + + ++ Sbjct: 1624 KQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNRRDFESEKRLRKDLKR 1675 >gi|323497355|ref|ZP_08102373.1| putative protein disaggregation chaperone [Vibrio sinaloensis DSM 21326] gi|323317438|gb|EGA70431.1| putative protein disaggregation chaperone [Vibrio sinaloensis DSM 21326] Length = 871 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 19/124 (15%) Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN------IVDVRQGYQQALAL- 584 L + E+++ L++ +R A E D Q +A Sbjct: 411 LDTASARIALTQGAKPEVIESLEQTIRYQNNEKAALEKEHALFGIAEDEIAELTQDIASN 470 Query: 585 ----------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +K+ L Q + ++++I+ GEA+K L+E+ Q+H+++ + Sbjct: 471 EQELSDLNARWKQEVALVDQIKLLQQEISDAQQDGEADKEKQT--QLNELIDQLHELQGE 528 Query: 635 EAMI 638 ++ Sbjct: 529 LPLV 532 >gi|297661816|ref|XP_002809425.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Pongo abelii] Length = 1748 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 49/124 (39%), Gaps = 15/124 (12%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579 + L + E +++L +QV ++ E ++ ++ Sbjct: 439 LQYSTADGPLTASK---DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFR 495 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630 Q A K+ + L +++E++ K++ Q + + + + + + E++ ++ + Sbjct: 496 QIKAYEKQIKTLQQEREDLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 555 Query: 631 IESQ 634 + +Q Sbjct: 556 LHTQ 559 >gi|297484005|ref|XP_002707780.1| PREDICTED: serine/threonine-protein kinase MRCK alpha-like [Bos taurus] gi|296479322|gb|DAA21437.1| serine/threonine-protein kinase MRCK alpha-like [Bos taurus] Length = 1719 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 50/124 (40%), Gaps = 15/124 (12%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579 + L + E +++L +QVR++ E ++ ++ Sbjct: 472 LQYSTADGPLTASK---DLEIKSLKEEIEKLRKQVRESSHLEQQLEEANSVRQELDDAFR 528 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630 Q A K+ + L +++EE+ K++ Q + + + + + + E++ ++ + Sbjct: 529 QIKAYEKQIKTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588 Query: 631 IESQ 634 + +Q Sbjct: 589 LHTQ 592 >gi|254282000|ref|ZP_04956968.1| replicative DNA helicase [gamma proteobacterium NOR51-B] gi|219678203|gb|EED34552.1| replicative DNA helicase [gamma proteobacterium NOR51-B] Length = 465 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 16/164 (9%), Positives = 47/164 (28%), Gaps = 6/164 (3%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 R + + + ++ E +++ +L+ + + + E + ++ + Sbjct: 11 SRGQDADVARLRMQPHSLEAERSVIGSLLLSAEGWDSIAEMVTASDFYRPEHRAIFRQIA 70 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + RL G +L+ L + V + Y A+ Sbjct: 71 QLIDRSEPVDVVTVADRLMATG------ELEAAGGHQYLTELAEQTPTVANIRAYAAAVH 124 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 R L ++I + E + ++ + Sbjct: 125 QRAVLRKLIGAAQDIAATGYHPEGRSAEELVDEAERRIMQISEE 168 >gi|157736909|ref|YP_001489592.1| replicative DNA helicase [Arcobacter butzleri RM4018] gi|315636087|ref|ZP_07891343.1| replicative DNA helicase DnaB [Arcobacter butzleri JV22] gi|157698763|gb|ABV66923.1| replicative DNA helicase [Arcobacter butzleri RM4018] gi|315479607|gb|EFU70284.1| replicative DNA helicase DnaB [Arcobacter butzleri JV22] Length = 480 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 49/143 (34%), Gaps = 3/143 (2%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L ++ +P L++ L + +K++ + E + I ++ Sbjct: 10 ERAVLSSIFFNPEELEDILGILKPKDFYLPAHKKIFEVMVKLHDEGMPIDEDFIRNKVNS 69 Query: 544 RGFGE-LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + +L ++ + E V++ +LA + + + + + Sbjct: 70 KDVDDSILLEILSANPITNTLAYVREIKDSSVKRELA-SLATTIKKVAIEDEVS-ANEAL 127 Query: 603 AQVTAKGEAEKTAILISILHEVH 625 + + T S L ++ Sbjct: 128 DTIQGELYKISTDSATSELKDMQ 150 >gi|139439447|ref|ZP_01772888.1| Hypothetical protein COLAER_01908 [Collinsella aerofaciens ATCC 25986] gi|133775226|gb|EBA39046.1| Hypothetical protein COLAER_01908 [Collinsella aerofaciens ATCC 25986] Length = 465 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 63/175 (36%), Gaps = 18/175 (10%) Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + EA +L ++ P +++E EL + + +++ + + + Sbjct: 23 LPQNQDAEANVLAAMLLSPEVVEEAQVELQPDDFYRPIHKTIYTAMVDMYNSRIPIDSIS 82 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + L + +LD +A + + +Q A+ +R +L R+ Sbjct: 83 LIDYLRS------INKLDAVGGEAYILELMGQTLS---LVNWQHHAAIVRRDSML-RELI 132 Query: 597 EIEKQIAQV--TAKGEAEKTAILISILHEVHIQIHQIES-----QEAMIEGFGKM 644 +I + A + ++ L + + + +++S E M+E + + Sbjct: 133 GATNEINALAYNAPTDTKEVVEL-AESKLLKVTAREVKSSYKTLTEFMVEAYNEA 186 >gi|3941320|gb|AAC82332.1| myosin [Schistosoma japonicum] Length = 802 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 89/244 (36%), Gaps = 22/244 (9%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 234 QRGDMEQRIKELEERLADEEDQAANLSEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 293 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +Q+ + + + ++ N + + L N L KL Sbjct: 294 KDNQIRTLQAEMAQQDETIGKLNKDKK------NLEEQNKRTQEALQAEEDKVNHLNKLK 347 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 348 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGVLKATQETVDDLERVKRDLEEQLRRKE 407 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626 A I + ++ L + L R+ +E++ +I ++ EAE+ A + ++ Sbjct: 408 AEISGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 464 Query: 627 QIHQ 630 ++ + Sbjct: 465 ELEE 468 Score = 38.3 bits (87), Expect = 3.8, Method: Composition-based stats. Identities = 27/264 (10%), Positives = 79/264 (29%), Gaps = 32/264 (12%) Query: 402 AELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L+ I +++ +++ ++ +Q + + E + Sbjct: 428 QRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLESELEEVVDRLEEQDGVTAAQSDLT 487 Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 +R + +K L E A+ + E +L + +K S Sbjct: 488 K-KREAELMKLKRDLEDARLQNEQAIAAMRKKQNDAVNELADQLDQANKAKAKAEKERSQ 546 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG--------FGELLKQLDRQVRDAGLWSATTEANIVD 573 ++ + + + +L E+ +LD R+ S+T + + Sbjct: 547 FKAELDDAHNQVDSIMKAKLNSEKTVKALEVQLQEVSVKLDEANRNLSEQSSTKARSSQE 606 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-------------------TAKGEAEKT 614 V + +Q + LS+ K+++ Q+ + + + Sbjct: 607 VSELQRQLEEAESQLSQLSKVKQQLSAQLEEARHNLEDESRMKAKLNGEVRNLSSDLDSL 666 Query: 615 AILISILH----EVHIQIHQIESQ 634 + ++ Q+ +++ + Sbjct: 667 RETLEEEQSAKGDLQRQLQKLQGE 690 >gi|295702826|ref|YP_003595901.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319] gi|294800485|gb|ADF37551.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319] Length = 867 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 20/207 (9%), Positives = 69/207 (33%), Gaps = 10/207 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++YI + R +++ + +++ + ++ ++ + A++ + Sbjct: 324 YRQYIEKDPALERRFQQVLVEEPSVEDTISILRGLKERFEIHHGVNIHDRAIVSAAVMSD 383 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG-----ELL 550 + +++ I + + + + S E + + E + Sbjct: 384 RYISDRFLPDKAIDLIDEACATIRTEIDSMPSELDEVTRRVMQLEIEEAALSKETDQASI 443 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 +L+ ++ + + + Q + L + K ++E + K + Sbjct: 444 TRLEAIRKEVSDLRERADTMKLQWEKEKQSIQTVQDVREQLEKAKRDLE----EAEGKYD 499 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEA 636 K A L + + ++ Q+E A Sbjct: 500 LNKAAELRHGRIPALEKELKQLEETAA 526 >gi|168231385|ref|ZP_02656443.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471740|ref|ZP_03077724.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458104|gb|EDX46943.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205334378|gb|EDZ21142.1| transporter, small conductance mechanosensitive ion channel (MscS) family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1108 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPAQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNDIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|152991067|ref|YP_001356789.1| hypothetical protein NIS_1324 [Nitratiruptor sp. SB155-2] gi|151422928|dbj|BAF70432.1| hypothetical protein [Nitratiruptor sp. SB155-2] Length = 95 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 47 DEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVV 103 DE+TPS G+ F GD ++ + G E+ + +A+ G+ + Sbjct: 40 DERTPSASIARD-GYIKDFGSGWGGDIVALIHEHRGEPLPEATKWVASCLGIRIDDE 95 >gi|300793826|ref|NP_001179866.1| serine/threonine-protein kinase MRCK alpha [Bos taurus] Length = 1719 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 50/124 (40%), Gaps = 15/124 (12%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQ 579 + L + E +++L +QVR++ E ++ ++ Sbjct: 472 LQYSTADGPLTASK---DLEIKSLKEEIEKLRKQVRESSHLEQQLEEANSVRQELDDAFR 528 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQ 630 Q A K+ + L +++EE+ K++ Q + + + + + + E++ ++ + Sbjct: 529 QIKAYEKQIKTLQQEREELNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTE 588 Query: 631 IESQ 634 + +Q Sbjct: 589 LHTQ 592 >gi|20094127|ref|NP_613974.1| SMC1-family ATPase [Methanopyrus kandleri AV19] gi|49036452|sp|Q8TXI4|RAD50_METKA RecName: Full=DNA double-strand break repair rad50 ATPase gi|19887131|gb|AAM01904.1| SMC1-family ATPase involved in DNA repair [Methanopyrus kandleri AV19] Length = 876 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 22/224 (9%), Positives = 73/224 (32%), Gaps = 19/224 (8%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +RL+ + + + ++ ++R +Q ++ EA L Sbjct: 240 ERLEGELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSKVRELENEEAELRR 299 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL-------- 541 + +L + + EL+ + L + ++ PE + + Sbjct: 300 RIEELRNLLDDLRSLRNRLESAEEELEGVKREL-EELKDEAGVDPERLVEFKDKIVEASE 358 Query: 542 ------CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 E L+++ ++ + G T ++ ++++ + K R+ ++ Sbjct: 359 RLRDLRREEELKRKLEKVSDELSELGDREETLQSEYEELQERLDEIQGELKEIRVKEKEL 418 Query: 596 EEIEKQIAQVTAK----GEAEKTAILISILHEVHIQIHQIESQE 635 E + + + + +L + ++ +++ +E Sbjct: 419 LERIESLREAEGECPVCLRKLPRERAEKLLRDAEKELERLQGRE 462 Score = 38.3 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 67/149 (44%), Gaps = 11/149 (7%) Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCE-RGFGELLKQLD 554 L+ + + D++ EL+++ L E K PE E+ +RL E R ++L+ Sbjct: 184 LETFRERVRDLKGSKKELKRVERELEELKREVKELEPEVEELKERLNELREAKREFERLE 243 Query: 555 RQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 ++R + + D+R+ ++A +R + + E+E + A++ Sbjct: 244 GELRLLENKIESLKGRRDDLRKLVEEGKEAERELQRLGDVPSKVRELENEEAELRR---- 299 Query: 612 EKTAILISILHEVHIQIHQIESQEAMIEG 640 + L ++L ++ +++ES E +EG Sbjct: 300 -RIEELRNLLDDLRSLRNRLESAEEELEG 327 Score = 38.3 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 24/208 (11%), Positives = 62/208 (29%), Gaps = 6/208 (2%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 RL + K + ++ R+ + L + + L Sbjct: 278 QRLGDVPSKVRELENEEAELRRRIEELRNLLDDLRSLRNRLESAEEELEGVKRELEELKD 337 Query: 490 TLINHPAILQEQYQELADIRYDNNELQK---LWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 P L E ++ + +L++ L L E E + Sbjct: 338 EAGVDPERLVEFKDKIVEASERLRDLRREEELKRKLEKVSDELSELGDREETLQSEYEEL 397 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 E L ++ ++++ + I +R+ + ++ L R++ E + A+ Sbjct: 398 QERLDEIQGELKEIRVKEKELLERIESLREAEGECPVCLRK---LPRERAEKLLRDAEKE 454 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634 + + L E+ ++ + + Sbjct: 455 LERLQGREEDLRKERRELKDRLESVRRE 482 >gi|326515338|dbj|BAK03582.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 856 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 4/131 (3%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + R + Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEREKDK-ASKARLVDVRKEL 451 Query: 567 TEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHE 623 + ++ Y++ R L +++EE++ + + + + + A L L E Sbjct: 452 EDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMDLARVADLRYGALQE 511 Query: 624 VHIQIHQIESQ 634 V I ++E + Sbjct: 512 VDAAIARLEGE 522 >gi|302841769|ref|XP_002952429.1| hypothetical protein VOLCADRAFT_93025 [Volvox carteri f. nagariensis] gi|300262365|gb|EFJ46572.1| hypothetical protein VOLCADRAFT_93025 [Volvox carteri f. nagariensis] Length = 819 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 46/107 (42%), Gaps = 6/107 (5%) Query: 533 LPEEIHQRLCERG--FGELLKQLDRQVRDAGLWSATTEANI-VDVRQGYQQALALYKRFR 589 E I Q+L E G + E +K L+ + ++ + + + A AL +R Sbjct: 603 ERELIMQQLVETGCKYQEQIKSLEALSGRHQAEADKYRRDLHAEAERHSEAAAALRERLG 662 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E+ ++ + A+ +K ++ L +V ++ + ++ EA Sbjct: 663 KWEQDATELTNRLREAAAQN--QKLQQELARLQDVKQRLER-DTSEA 706 >gi|170026068|ref|YP_001722573.1| replicative DNA helicase [Yersinia pseudotuberculosis YPIII] gi|186893732|ref|YP_001870844.1| replicative DNA helicase [Yersinia pseudotuberculosis PB1/+] gi|169752602|gb|ACA70120.1| replicative DNA helicase [Yersinia pseudotuberculosis YPIII] gi|186696758|gb|ACC87387.1| replicative DNA helicase [Yersinia pseudotuberculosis PB1/+] Length = 451 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 41/124 (33%), Gaps = 3/124 (2%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E ++L L+ + +A + + +++++ + K Sbjct: 5 KLPPHSLEAEQSVLGGLMLDNERWDNVSERVASKDFFSRPHRRIFTEMQRLLENSKPIDL 64 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L ++G L + A L T A + + A+ + ++ + Sbjct: 65 ITLSESLEQKGD---LDSVGGFAYLAELSKNTPSAANIGAYADIVRERAVVREMISVANE 121 Query: 595 KEEI 598 + Sbjct: 122 IADA 125 >gi|158299982|ref|XP_319987.4| AGAP009210-PA [Anopheles gambiae str. PEST] gi|157013781|gb|EAA43417.4| AGAP009210-PA [Anopheles gambiae str. PEST] Length = 1710 Score = 45.6 bits (106), Expect = 0.023, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 62/209 (29%), Gaps = 6/209 (2%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + + +L + K + ++ + E Sbjct: 702 LAAKQDELSNQAKQLQELEAEKVKVQQELSSLQQKFEQSRTEHEQLIAEVHALADAERNT 761 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERG 545 + L + + + LA + E + L S L ++ E ++Q L + Sbjct: 762 IAEL--RKQLQTSEQENLAKDK-QLEENEVLVSALQNELKELN-VSKASLNQELTAIKAS 817 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 F + L +++ E + ++ +Q + R++ E+ AQ Sbjct: 818 FADKDGTLANILQEKTALEKQLEESKQELASKVKQLEEDLRNREDTLRKELELSASTAQQ 877 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E+ L E+ Q+ + Q Sbjct: 878 QLSAKEEELTRLSQAREELQKQLETAQQQ 906 Score = 42.6 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 28/287 (9%), Positives = 86/287 (29%), Gaps = 30/287 (10%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + A + +E +++ + E + ++D Sbjct: 1124 QDLTVQIDQKAQRIVELEQELDEQRTLQQKRSAEVAEMVAKLEENGKSYAEMLQQLQDSY 1183 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + + + ++ Q+ + + + + ++ L + + + Sbjct: 1184 TQIEALKKAKSESEEACQQVQQRLQDLNSSYSEMEEEQVDLVSREETLRKELAQLQEQMQ 1243 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNN-------ELQKLWSFLFSDFVEQKYF 532 + E + A++ + + L + ++ EL L L + Sbjct: 1244 QAAGEQK-----ERYDAVVSKNEELLKQLESTSSAKGATETELIALRQELATKSTSLGEL 1298 Query: 533 LP--EEIHQRLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 EE++ +L + + +K L++ V + D L ++ Sbjct: 1299 HAKVEELNAQLQTKATLEQQVKSLEQSVSAKDASILELSGKVED----------LQRQTT 1348 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E E+++ Q+ ++ T L ++ Q+ ++ A Sbjct: 1349 SSDAKIVEKEEELKQLQTASASKDTQ-----LKDLQQQLEAMQKTLA 1390 Score = 38.3 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 26/228 (11%), Positives = 70/228 (30%), Gaps = 11/228 (4%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + +++ + +Q L +K + ++ + + Sbjct: 496 PEEINELKRSLENEIQNLHEKVADAERAAASKLSALTISEECLKEQINYLEHRVDEQSDQ 555 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF------LFSDFVEQKY 531 E + + EQ + LA ++ + + L + L VE+ Sbjct: 556 LTVKDAELEKQYLALKNAE--SEQEERLAALQDELRSKKDLLAERDQQVQLLEQTVEELR 613 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + + L + ++ + E +V + A K Sbjct: 614 ADVALVEVNASKTHLERDLTNATQTIKVLEEDRSVKEKAAQEVESKLTASEAALKAEIAA 673 Query: 592 SRQKEEIEKQIAQV--TAKGEAEKTAILISILH-EVHIQIHQIESQEA 636 +++E + +++ + + E +A L++ E+ Q Q++ EA Sbjct: 674 RQEQESLAQKLQRDLQSLATSGESSAALLAAKQDELSNQAKQLQELEA 721 >gi|319901560|ref|YP_004161288.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108] gi|319416591|gb|ADV43702.1| ATP-dependent chaperone ClpB [Bacteroides helcogenes P 36-108] Length = 864 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 23/212 (10%), Positives = 71/212 (33%), Gaps = 10/212 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++ + + +++ + + +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQIVMVNEPDTLSTISILRGLKERYENHHHVRIKDDAIIAAVELSN 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S E + + +L Sbjct: 377 RYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIEREAIKRENDKLKL 436 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK-- 613 + L + N + +Q L + + + E ++ + + +G+ K Sbjct: 437 EQIGKELAELKEQENSYKAK--WQSEKTLVNKIQQNKIEIENLKFEADKAEREGDYGKVA 494 Query: 614 ------TAILISILHEVHIQIHQIESQEAMIE 639 L + + ++H+++ +AMI+ Sbjct: 495 EIRYGKLQALNKEIEDTQQKLHEMQGDKAMIK 526 Score = 41.0 bits (94), Expect = 0.71, Method: Composition-based stats. Identities = 28/264 (10%), Positives = 70/264 (26%), Gaps = 34/264 (12%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + + +DM + + +K I Sbjct: 220 RILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFEERLKAVINEVKKSEGDI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E + ++N P L + L + + R+ + Sbjct: 328 ERRFQIVMVNEPDTLSTI---------------SILRGLKERYENHHHV-------RIKD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + D L + + + ++ + +SR+ +++E + Sbjct: 366 DAIIAAVELSNRYITDRFLPDKAIDLMDEAAAKLRMEVDSVPEELDEISRKIKQLEIERE 425 Query: 604 QVTAKGEAEKTAILISILHEVHIQ 627 + + + K + L E+ Q Sbjct: 426 AIKRENDKLKLEQIGKELAELKEQ 449 >gi|302828474|ref|XP_002945804.1| hypothetical protein VOLCADRAFT_86130 [Volvox carteri f. nagariensis] gi|300268619|gb|EFJ52799.1| hypothetical protein VOLCADRAFT_86130 [Volvox carteri f. nagariensis] Length = 2493 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 81/246 (32%), Gaps = 29/246 (11%) Query: 418 QKLRYYYSQAIRDR----------LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 +R Y + + + ++ L ++ + E + R ++ +++ + Sbjct: 1077 ADVRAEYERQLAEARTVHQKQLLDVRALAERQVEEARAHHRKQMEDVHVHNERKLDEVRR 1136 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQE--------QYQELADIRYDNNELQKLW 519 + ++ + + + +E L+ +L++ + + + L Sbjct: 1137 R---MERQAEEARAAQERVLVEARAQRDKVLEDARLAQTKALEDARGQQQRALEDTRALH 1193 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ 579 + +D E+ L E + R V D + + R+ + Sbjct: 1194 ERVLADTQAVHVKQVVELKN-LYESELRRAAHDVGRAVDDTRRVAEEARRQEAEARRAKE 1252 Query: 580 QALALYKRFRLLSRQKE-------EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +A+AL R L + E E + Q+ + + E + + E + ++E Sbjct: 1253 EAVALRDRILGLEAELRARDGALREAETRFVQLDTRSKTELAETQANAIKEAALMKLEME 1312 Query: 633 SQEAMI 638 +A + Sbjct: 1313 DAKAAL 1318 >gi|147807315|emb|CAN77537.1| hypothetical protein VITISV_030459 [Vitis vinifera] Length = 313 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 52/131 (39%), Gaps = 5/131 (3%) Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 EL+ + + + + ++ ER L + +D A +AT Sbjct: 150 SEPELELIILRVINKSEAEGDMST-DLRVGFKERHRKRLHEAIDMTDLTAAQKAATEGTE 208 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQI 628 + + +G ++A+ + L ++ +E +I +V + ++ L + + ++ Sbjct: 209 TLKLAEGEREAIRA--KTERLKKEGGVVEAKIKEVEQENSQLKKEMEELWARFATLKKEM 266 Query: 629 HQIESQEAMIE 639 +++++ A + Sbjct: 267 KELQARFATKK 277 >gi|47606682|gb|AAT36324.1| paramyosin isoform 1 [Dictyocaulus viviparus] Length = 876 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D + E+ + + + +R L+ + + + DQK Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEVHDQK 225 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ Q ++ L Q ++ R + Q ++++L + ++ Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + + + I Q + + A++ + E++ L + E Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E +L+++ + + + E IVD+ + L + L +Q E++ Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +I ++ + L V+ ++ +++ Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415 >gi|311269150|ref|XP_003132365.1| PREDICTED: TATA element modulatory factor-like [Sus scrofa] Length = 1052 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 7/175 (4%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 G + Q KL+ +E L ++ + ++ A + EL L Sbjct: 613 GKEEVEKQHRDNIKKLNSVVERQEKDLGRLQLDMNELEEKNRSIQAALDSAYKELTDLHK 672 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + + + + + + EL L++ +A T + D+R Q+ Sbjct: 673 A---NAAKDSEAQEAALSREMRAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQR 727 Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A A ++ L + E+++++ + + E + + S + QI +++ Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781 >gi|194673227|ref|XP_001790689.1| PREDICTED: hypothetical protein [Bos taurus] gi|297482730|ref|XP_002693047.1| PREDICTED: hypothetical protein [Bos taurus] gi|296480296|gb|DAA22411.1| hypothetical protein BOS_14398 [Bos taurus] Length = 1447 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 44/338 (13%), Positives = 108/338 (31%), Gaps = 25/338 (7%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D D L L R +R + + ++ Sbjct: 679 DEDQIRAEQEASLQRLREELESLQKAERASLEERSRQTLEQLREEMEASEKREQAALKVE 738 Query: 382 VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY--YSQAIRDRLQQLFQKY 439 + ++ E + A LE + + + + +++ ++Q+ QK Sbjct: 739 KERALQQLREQLEGERREAAAALEREHREELERLSSSLEAKHREVVSSLQKKMQEAHQKE 798 Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 + ++ A HR + S L++ K + E + H ++ Sbjct: 799 EAQLQESLGRAEQRAHHRVYQVLEYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVA 858 Query: 500 E------------QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG-- 545 E + + L + + L++ +++ E++ +R E+ Sbjct: 859 EARQQYEAEERKQRAELLGHLTGELERLRRAHERELESVRQEQDRQLEDLRRRHREQERK 918 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ-------KEEI 598 +L +L+ + +D A + R+ QQ L + ++ L S + EE Sbjct: 919 LQDLEVELETRTKDVKARLAQLDVQKEAARKEKQQLLDVQRQVVLESEEATATHQHLEEA 978 Query: 599 EKQIAQVTAKGEAEK--TAILISILHEVHIQIHQIESQ 634 +K+ + + + L + E+ Q+ +++Q Sbjct: 979 KKEHTHLLESNQQLRRILEELQARKLELESQVELLQAQ 1016 Score = 42.2 bits (97), Expect = 0.28, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 40/108 (37%), Gaps = 9/108 (8%) Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD------VRQGYQQA 581 E + P + ++L E + + R++ ++ + R+ +A Sbjct: 569 EVRSAEPAALREQLSEAALEATDEAVTRELEQEQTRLLESKQEKMQRLREKLCREEEAEA 628 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 L L+++ + +++Q+ + T + E + L + Q+ Sbjct: 629 LQLHQQK---EKALSSLKEQLQRATEEEETQMREQERQRLSRLRAQVQ 673 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 83/221 (37%), Gaps = 18/221 (8%) Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--------G 474 Y Q + L++ Q+ EH K+ + + Q + + G Sbjct: 822 EYEQELSGLLREKRQEVEREHERKMDRMKEEHQQVVAEARQQYEAEERKQRAELLGHLTG 881 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E L ++ QEQ ++L D+R + E ++ L + + + Sbjct: 882 ELERLRRAHEREL-------ESVRQEQDRQLEDLRRRHREQERKLQDLEVELETRTKDVK 934 Query: 535 EEIHQ-RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 + Q + + + +QL R L S A + + ++ L + + L R Sbjct: 935 ARLAQLDVQKEAARKEKQQLLDVQRQVVLESEEATATHQHLEEAKKEHTHLLESNQQLRR 994 Query: 594 QKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIE 632 EE++ + ++ ++ E ++ L + ++ +Q + + Sbjct: 995 ILEELQARKLELESQVELLQAQSQRLQKHVSDLEVQAQKKQ 1035 Score = 39.5 bits (90), Expect = 1.8, Method: Composition-based stats. Identities = 42/289 (14%), Positives = 100/289 (34%), Gaps = 26/289 (8%) Query: 360 DSFIRCYGKTAFE--KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 + R A + + ++L + +R TE ++ + L+ + + Sbjct: 618 EKLCREEEAEALQLHQQKEKALSSLKEQLQRATEEEETQMREQERQRLSRLRAQVQSSSE 677 Query: 418 Q------KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 + Q +R+ L+ L + R + + R++ S++ Q++L Sbjct: 678 ADEDQIRAEQEASLQRLREELESLQKAERASLEERSRQTLE--QLREEMEASEKREQAAL 735 Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 K LRE + E+ + A + ++ E + S + Sbjct: 736 KVEKERALQQLRE-----------QLEGERREAAAALEREHREELERLSSSLEAKHREVV 784 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL- 590 ++ Q ++ +L + L R + A ++ ++ +R Sbjct: 785 SSLQKKMQEAHQKEEAQLQESLGRAEQRAHHRVYQVLEYEQELSGLLREKRQEVEREHER 844 Query: 591 -LSRQKEEIEKQIAQVTAKGEAEKT---AILISILHEVHIQIHQIESQE 635 + R KEE ++ +A+ + EAE+ A L+ L ++ + +E Sbjct: 845 KMDRMKEEHQQVVAEARQQYEAEERKQRAELLGHLTGELERLRRAHERE 893 >gi|309390181|gb|ADO78061.1| uncharacterized protein with myosin-like domain [Halanaerobium praevalens DSM 2228] Length = 427 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 6/129 (4%) Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIV 572 +L + LF+ E ++Q+L ++ ++L+ + + A EA Sbjct: 70 YSELRNALFNI--NDVLNRLENLNQQLEKRDQNLAAKNEELEARDQKLAELQAQIEARED 127 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISILHEVHIQIHQ 630 + + + ++ +EK++A++T + ++ L S ++ Q+ + Sbjct: 128 KIAAKEAEIETKEAEIKAKDQELLAVEKELAELTKNRDQLEQRIENLSSQRQDLEEQVSE 187 Query: 631 IESQEAMIE 639 +++Q + +E Sbjct: 188 LQAQISDLE 196 >gi|331219126|ref|XP_003322240.1| hypothetical protein PGTG_03777 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309301230|gb|EFP77821.1| hypothetical protein PGTG_03777 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1513 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 89/265 (33%), Gaps = 4/265 (1%) Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 + + + ++ S + + L + +++K R S D Sbjct: 1155 EKLESEKATQEQEIEQLQNRLSEARDEVESLLSKSQEQQERLQENEKEREALSDDKEDLE 1214 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 QL + H + + + L S K + + Sbjct: 1215 DQLEAANLKLHETEAQLSQVTEARDSMDAEIRALHTQKKESSASSAKIEQLQETISKLET 1274 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + ++ A++R EL++ + + + L FG+L + Sbjct: 1275 ENAEYAEQHSSLTAEVRQLKTELERKAHTIINSEKSYHRVQATLEKRTL---DFGQLEDE 1331 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611 L+R+ + + T + D + ++ + + + L ++++ Q+ Q +A + Sbjct: 1332 LERKTNEIMGLNETNNNLLKDTKALRKELIKVKAEAQDLGHHLQDLKDQVDRQASAPNNS 1391 Query: 612 EKTAILISILHEVHIQIHQIESQEA 636 ++ L + L ++++++SQ A Sbjct: 1392 KEMTKLKNELSLCKKELNELKSQRA 1416 Score = 37.6 bits (85), Expect = 7.7, Method: Composition-based stats. Identities = 22/225 (9%), Positives = 77/225 (34%), Gaps = 21/225 (9%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +++QL + + K + + ++ + ++ + + Sbjct: 995 IHELQQQVEQLRHQLDLANKNVDHKLAKLSEVSENVVKVSTEAITARRRADDFEEKAQKL 1054 Query: 485 AALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L LI + + L++I + + Q + + E + Sbjct: 1055 EERLDKLIAEDGTIAQVKHRLSNIGCPDCGERFDANQIVRFRVL------PETQELEFTE 1108 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL----SRQK 595 + E + L + + T++ I+ +++ L ++ ++ Sbjct: 1109 QPTENDTEDHSSGLKVKFMELEANHQTSQTEIIKLKRELDLKLDELEKLESEKATQEQEI 1168 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIE 639 E+++ ++++ ++ L+S E ++ + E + EA+ + Sbjct: 1169 EQLQNRLSEAR-----DEVESLLSKSQEQQERLQENEKEREALSD 1208 >gi|240117591|ref|ZP_04731653.1| replicative DNA helicase [Neisseria gonorrhoeae PID1] gi|268603295|ref|ZP_06137462.1| replicative DNA helicase [Neisseria gonorrhoeae PID1] gi|268587426|gb|EEZ52102.1| replicative DNA helicase [Neisseria gonorrhoeae PID1] Length = 468 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SITKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|309361022|emb|CAP30427.2| hypothetical protein CBG_11240 [Caenorhabditis briggsae AF16] Length = 1069 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 41/111 (36%), Gaps = 5/111 (4%) Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 P ++ + ++L + R + + + + L+L + + Sbjct: 477 VQPNDMISLMQSTFEQQILAERQRLAEEHNRRMQEEAEKMAKFHEAMYRQLSL--QQEMS 534 Query: 592 SRQKEEIEKQIAQVTAK---GEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +Q E E + + + +AE ++ ++ ++ ++E + A IE Sbjct: 535 QQQIREQELALQRHREELEKRDAELKREALARQQQIEMEAREVEQRRAAIE 585 >gi|268594503|ref|ZP_06128670.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02] gi|268600983|ref|ZP_06135150.1| replicative DNA helicase [Neisseria gonorrhoeae PID18] gi|268547892|gb|EEZ43310.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02] gi|268585114|gb|EEZ49790.1| replicative DNA helicase [Neisseria gonorrhoeae PID18] gi|317163921|gb|ADV07462.1| replicative DNA helicase [Neisseria gonorrhoeae TCDC-NG08107] Length = 468 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|269127279|ref|YP_003300649.1| hypothetical protein Tcur_3069 [Thermomonospora curvata DSM 43183] gi|268312237|gb|ACY98611.1| protein of unknown function DUF901 [Thermomonospora curvata DSM 43183] Length = 484 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 78/237 (32%), Gaps = 19/237 (8%) Query: 418 QKLRYYYSQAIRDRLQQL-FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + +R +A + L L ++ + R+ +++ R + + L Q + + K Sbjct: 58 EAVRQRVVEAAAELLGTLATEEIPASLRPFARWERRHRAKRAGRHIAPVLEQDPVFREKA 117 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS-----DFVEQKY 531 + E P +++ + ++L VE Sbjct: 118 AGPLRAAE----------PELVEAVASGTVPPA-ADPVTVAAVAYLLRPPGWPRLVETAR 166 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGL-WSATTEANIVDVRQGYQQALALYKRFRL 590 E + + + L R++ +A + E ++R+ + L ++ Sbjct: 167 RELERSASAAEDAAYERRIAALQRELAEARAGRAGELERLRAELRKAKAEISELRRKLHE 226 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + ++ + A+ E ++ A + ++ ++ S+ A E + S R Sbjct: 227 ERAAVKAARQRAESLAAELEQQRAAAREAGAAA-DKELRRLRSKLAQAEAAHESSRR 282 >gi|237650782|ref|ZP_04525034.1| ABC transporter, ATP-binding protein [Streptococcus pneumoniae CCRI 1974] Length = 633 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + + + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E+ Q++ + A+ + ++ ++ L ++ L + EE+E Q Sbjct: 532 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLEAEIEELESQSQ 590 Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q+ +A+K L + L ++ + +EAM+E Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625 >gi|227499903|ref|ZP_03929996.1| replicative DNA helicase DnaB [Anaerococcus tetradius ATCC 35098] gi|227218012|gb|EEI83285.1| replicative DNA helicase DnaB [Anaerococcus tetradius ATCC 35098] Length = 443 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 14/169 (8%), Positives = 54/169 (31%), Gaps = 19/169 (11%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + L E ++ +++ Q + + + ++ Q+++ + F + Sbjct: 6 RPLPNDFLAEQGIIGSILAKNETFDSVNQIIKPVDFYDSRTQRIYKSIIKMFEKDIKVDE 65 Query: 535 EEIHQRLCER------GFGELLKQL-------------DRQVRDAGLWSATTEANIVDVR 575 + +L + G E + ++ + V++ + + A+ + Sbjct: 66 ISLISQLKDENILQEVGGEEFITEITLSSFYTPNVDTYAKSVKEKSILRSLIGASEDIID 125 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 Y+ + + E+ + +E + +++E+ Sbjct: 126 LSYRHEEKIESILSTAESKIFEVSQDNHNKGLVRLSETMEETLQMINEL 174 >gi|193062737|ref|ZP_03043831.1| phage tail tape measure protein, lambda family [Escherichia coli E22] gi|192931859|gb|EDV84459.1| phage tail tape measure protein, lambda family [Escherichia coli E22] Length = 1069 Score = 45.6 bits (106), Expect = 0.024, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 5/122 (4%) Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG 577 L + L + +Q ++ F +++ R+ + + Sbjct: 146 LAAALRNLDQQQDELNAALFSGKINGSQFDNYSRKIQETRRELTGEAQAEREAAKAHDEQ 205 Query: 578 YQQALALYKRFRLLS---RQKEEIEKQIAQVTAKG--EAEKTAILISILHEVHIQIHQIE 632 L + + + E +KQ+++ AKG E L LH + ++ + Sbjct: 206 VAALQRLIAQLDPVGTAFNRLTEQQKQLSEAKAKGMLSPEMYEELSGKLHAMRSELEATQ 265 Query: 633 SQ 634 SQ Sbjct: 266 SQ 267 >gi|332259365|ref|XP_003278758.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like [Nomascus leucogenys] Length = 1272 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 33/317 (10%), Positives = 93/317 (29%), Gaps = 36/317 (11%) Query: 344 PGNRVNFVLLSRGEDPDSFIRCYGKTAFEK---LIVESLPLVDMLWKRETENRSFNTPDE 400 V G D + Y + +++ L + + + E Sbjct: 90 NNFICQRVEGGFGLDISTSAPGYLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELS 149 Query: 401 RAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQLFQKYITEHSGYGRYWKKNAR---- 455 + L+ + R Q + R++QL ++ ++N + Sbjct: 150 HKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQN 209 Query: 456 ----HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD 511 + + L Q+ L + S + +++ + + E+ + + Sbjct: 210 LDAASKRLREKEDSLAQAGETINALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQ 269 Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 + + Q+ + Q+ + +K L++++ Sbjct: 270 HKKCQEANQKIQELQASQEA-----------RADHEQQIKDLEQKLSL-----------Q 307 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 + + R L R+ +++ ++ A++ E L L + ++ + Sbjct: 308 EQDAAIVKNMKSELVRLPRLERELKQLREESARLREMRETNGL--LQEELEGLQRKLGRQ 365 Query: 632 ESQEAMIEGFGKMSGRL 648 E + + G + RL Sbjct: 366 EKMQETLVGLELENERL 382 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 89/278 (32%), Gaps = 22/278 (7%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 ++L ES L +M + + ++ + ++ + R Sbjct: 330 ELKQLREESARLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSW 389 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 +RL Q I R+ + + + SS + + E + Sbjct: 390 ERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSSRGLEQGRHQLQEEVNSVS 449 Query: 490 TLINHPAIL--QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 IN +E + L+ Q++ + L + + L + Sbjct: 450 GCINRSRRFTGKEVARRLS---------QRVLTVLLER--DGMRAILGSYDSELTPAEYS 498 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY----KRFRLLSRQKEEIEKQIA 603 QL R++R+A ++ ++ QAL +R +L + + ++ Q + Sbjct: 499 P---QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSS 555 Query: 604 QVTAK--GEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E+ L + E+ + Q+E ++ M+E Sbjct: 556 SAEQSCLFSREEVDTLRLKVEELEGERSQLEEEKRMLE 593 >gi|269928504|ref|YP_003320825.1| hypothetical protein Sthe_2589 [Sphaerobacter thermophilus DSM 20745] gi|269787861|gb|ACZ40003.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 1164 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 32/242 (13%) Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQ------LFQKYITEHSGYGRYWKKNARHRDQKGPS 463 + D R Y ++ D L++ L + + E +G + A + P Sbjct: 103 PLRVAVPDDH-RDRYLLSLHDLLREEDAGGPLAEVIVRESAGGYDVPRAIATLGYRASPP 161 Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + +V+ + + ++R + +E Y+ L +EL++ Sbjct: 162 RGGRPPEVVERVRAAQQAVR-------------VTREGYEHLRREEARLDELRERAQRAM 208 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 ++ L + + R E ++L + + + A Sbjct: 209 EAR-DRAALLEQALAYAAARRTLDEARERLATFPEVLARLHGDEDQRLERIEANLTSA-- 265 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEA------EKTAILISILHEVHIQIHQIES--QE 635 +R + + E + G E+ L + L ++ +I + E+ QE Sbjct: 266 -RQRRTEAEQALQRAEADARETGLMGHELPPGFIERLRGLYAELQDLASEIRRAEAAYQE 324 Query: 636 AM 637 A+ Sbjct: 325 AL 326 Score = 40.3 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 25/225 (11%), Positives = 67/225 (29%), Gaps = 26/225 (11%) Query: 412 INHIKDQKLRYYYSQAIRD-RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 D+ + ++ + R + + E R+ A + + Sbjct: 566 WQRANDEVVTQESARDLARTRFRDALARLNGEFE---RFGYSEAVDLPSAAGYLEDLAAR 622 Query: 471 LVKGKLSKKPSLREAALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLF---SDF 526 + + + + + R L + A + E+ L + ++ + L+ +L Sbjct: 623 VERLRQATDQAARARQALEDASHEIARLEDERRALLEPLGLSEDDPRALYEWLRVLDDYR 682 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + E + E L +A +RQ + L Sbjct: 683 NAVRAVTDAEAVVSVSASALAEHPDLL--------------DATAEALRQELHEQQLLAA 728 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL----ISILHEVHIQ 627 ++R+ IE++I++ + + E+ ++ L + Sbjct: 729 ELESITREIGGIERRISEARRQQDLERALAEQDDAMAALRAARER 773 >gi|224052372|ref|XP_002192279.1| PREDICTED: discs, large homolog 5 (Drosophila) [Taeniopygia guttata] Length = 1891 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 26/265 (9%), Positives = 84/265 (31%), Gaps = 18/265 (6%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + + + + + + + + ++ + + + Q +R Sbjct: 290 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 349 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 LQ ++ T + +K RD RL+ S + E L + Sbjct: 350 LQSEVTRFKTMQLKATKDAEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 409 Query: 492 INH----PAILQEQYQEL--------ADIRYDNNELQKL---WSFLFSDFVEQ-KYFLPE 535 + + + E+ + L DI N E++ L + + + E + Sbjct: 410 LKNTSSEKRVASEEMEALRQIQDSATLDIERANKEIEMLRKQYEAMSQELKEAVQEAEVA 469 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + +++ + + + + D+ + + + K+ R+ Sbjct: 470 KCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNLDDMRKQKNDAVREL 529 Query: 596 EEIEKQIAQVTAKGEAEKTAILISI 620 +E+++++ + + L++ Sbjct: 530 KELKEKME--NQLEKEARFRQLMAH 552 >gi|91070436|gb|ABE11347.1| DnaB replicative helicase [uncultured Prochlorococcus marinus clone HOT0M-10E12] Length = 460 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 23/194 (11%), Positives = 60/194 (30%), Gaps = 28/194 (14%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + + + +S G + + E A+L ++ P + + + N Sbjct: 7 PNNGQNKNFKKDFNSENSGLVPPQNVQAEEAILGGILLDPDAIGRIADLIKPEAFYINAH 66 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 Q+++ + K + L + + L++ ++ L + Sbjct: 67 QEIYRTALMLHTQGKPTDLTSMSAWLADN------RSLEKIGGNSKLVELVENVSSTASI 120 Query: 576 QGYQQALALYKRFRLLSRQ------------------KEEIEKQI----AQVTAKGEAEK 613 + + R L R ++ E++I + +KG + Sbjct: 121 EQVANLINDKFMRRQLIRSGNEVVQLGFDQTLDTNEVLDKAEQKIFEISQEKPSKGLTQA 180 Query: 614 TAILISILHEVHIQ 627 IL S +E+ + Sbjct: 181 AEILTSTFNEIESR 194 >gi|46579372|ref|YP_010180.1| replicative DNA helicase [Desulfovibrio vulgaris str. Hildenborough] gi|46448786|gb|AAS95439.1| replicative DNA helicase [Desulfovibrio vulgaris str. Hildenborough] Length = 493 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 21/219 (9%) Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 L Q K A + + L++ E A+L + Sbjct: 3 LNQPRPKSRKPQQNNYSSETTPAYGGGGADGAAERASAELLRRVPPHSIE-AEQAVLGGV 61 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG------ 545 +IL L + Q L+ + + + + L G Sbjct: 62 FLKNSILHTLVDTLTAEDFYLPAHQMLFESFLELYRKNAPIDLVSVAEHLKAHGNLEAVG 121 Query: 546 ----FGELLKQLDRQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKE 596 EL + + + + ++ + L + E Sbjct: 122 GAIYLAELAQAVVSAANAEYYGTIVRDKSLQRSLISACSDIISNCFDASREVGSLLDESE 181 Query: 597 EIEKQIAQVTA----KGEAEKTAILISILHEVHIQIHQI 631 + I++ T+ + E + L E ++ ++ Sbjct: 182 QAVFAISERTSGKVFRSSKELVKKVFEEL-EKRVERKEL 219 >gi|42521686|ref|NP_967066.1| hypothetical protein Bd0038 [Bdellovibrio bacteriovorus HD100] gi|39574216|emb|CAE77720.1| dnaB [Bdellovibrio bacteriovorus HD100] Length = 471 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 21/173 (12%), Positives = 58/173 (33%), Gaps = 12/173 (6%) Query: 472 VKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY 531 + ++ + E ++L L+ L + L + QK++ + + + Sbjct: 1 MSTRIPPQNLDAEQSILGGLMLDREALDQVGDVLMADDFYKPGHQKIYEAIKDLHAKGQP 60 Query: 532 FLPEEIHQRLCERGFGE-------LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L +G + L+ LD+ + A + + + ++ Sbjct: 61 IDIITVTNVLQSQGHMDVAGGPEYLISLLDKTISSANISTHAKIVKDKATLRRLI-SINS 119 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAK----GEAEKTAILISILHEVHIQIHQIES 633 + + ++E + Q ++ G+ + L+ + V I +IE Sbjct: 120 SLIEKAYDQDFVDVESFVDQAESEIFKIGDTKAKTGLVGSMEIVKASIQKIEE 172 >gi|303231717|ref|ZP_07318440.1| hypothetical protein HMPREF9321_1714 [Veillonella atypica ACS-049-V-Sch6] gi|302513666|gb|EFL55685.1| hypothetical protein HMPREF9321_1714 [Veillonella atypica ACS-049-V-Sch6] Length = 325 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 49/382 (12%), Positives = 95/382 (24%), Gaps = 86/382 (22%) Query: 18 SNLIGQYVD--WDRRK-TNAVKGDYWACCPFHDEKTPSFHCNDSKG----FYYCFSCHVK 70 +++ Y+ + Y P H + PS + C SC Sbjct: 15 VDIVQTYLPDYLKLKGLVTHEHNKYHCLNPNHTDSHPSMCLYRGRQDGKLRLKCQSCGKV 74 Query: 71 GDHLSFLSALLGC-SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFH 129 D + ++ L F++ + + + P + ++ Sbjct: 75 FDLFNVVAHLDHIAHFVDIYYHICNLFQIDPDNPTP-------------------SKYYQ 115 Query: 130 HSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLL 189 + + D GL Sbjct: 116 YQQVKEAEPETVQAYLSL-------SRQNPALTTDKW--------------------GLR 148 Query: 190 IDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLY 249 +Y + G F R + + KY SP + K Sbjct: 149 SISKEIVETYQLGFDSKANAYVIPVGS-AGFIQRFI-DNTTPKYKRSPGLKSYFLSK--- 203 Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY-QLR 308 +++ IL EG +D LSL G NV++ G A + Sbjct: 204 -----------------SFDNTLPFILTEGEIDALSLLTCGYPNVLALGGIASALDCYEQ 246 Query: 309 LLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVL----LSRGEDPDSFIR 364 S +L FD D G K L IP + +D + + Sbjct: 247 HFLTSSLPPILAFDLDQVGQDTYQKVCALAEKLGIPKPIDFWSYLVNVPDNTKDINDLLI 306 Query: 365 CYGKTAFEKLIVESLPLVDMLW 386 + ++ + +++ + + Sbjct: 307 HH-----QEYLKQAIDTIKEDF 323 >gi|268683995|ref|ZP_06150857.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679] gi|268624279|gb|EEZ56679.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679] Length = 468 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|124024996|ref|YP_001014112.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A] gi|123960064|gb|ABM74847.1| putative ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Prochlorococcus marinus str. NATL1A] Length = 931 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 5/108 (4%) Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 +E+K + + L+ ++ L + +++Q +Q + Sbjct: 470 IIEEKESQVNHLESSIINADKDTTLETINNLQEKKELLLF----ELAEIKQKWQDQIDKS 525 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEVHIQIHQIE 632 + L +E++ I +V G+ E+ L L+++ +I +IE Sbjct: 526 AELQELKISLKELKNLIREVEISGDMEEVEKLKYDQLYQLQERIEEIE 573 >gi|308163439|gb|EFO65775.1| Axoneme-associated protein GASP-180 [Giardia lamblia P15] Length = 1641 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 33/288 (11%), Positives = 88/288 (30%), Gaps = 13/288 (4%) Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 DP+ R F+ +V+ + + L + A + + +++ Sbjct: 975 DPEEQARVSSILDFDDGLVQKVDELQALVNALAGENDHYKGEH-ARITAEMDALREDLRN 1033 Query: 418 QKLRYYYSQAIRDRL-------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSS 470 KLR ++ ++RL L + + G + A ++ G R+ + + Sbjct: 1034 GKLRGDSLESDKERLMRQVRDLTDLTESLRKDLGGQQDQGEIAALRQEVAGLRSRVDELT 1093 Query: 471 LVKGKLSKKPSLREAALL--LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + E L + L E E+ + E +++ L + Sbjct: 1094 DAAKGKDEALEQLEKELAVARASAENTERLSELLDEVEGYKAKLGESKEMVDSLLAQLAS 1153 Query: 529 QKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + L + + G ++ + A + +V ++ + Sbjct: 1154 KDAELAGAVAGLRAVADDDGAELARARVASLENEVAELRGQLSARLAEVDAVHRNLVDSD 1213 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 L + + Q+ + E+ +L L + ++ ++ + Sbjct: 1214 AEAARLREELGGLRVQLEVAQVPEDTERVRMLEDQLQDARKELAELRA 1261 Score = 43.7 bits (101), Expect = 0.098, Method: Composition-based stats. Identities = 36/261 (13%), Positives = 82/261 (31%), Gaps = 25/261 (9%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + L + ++ + +D R + +RDR+Q+ + Sbjct: 523 ERLLADAQGGDDERAKELNEQIADLQFELSSAKQDIDEREDEIELLRDRIQEEMKNSAAL 582 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI-----NHPAI 497 R D R+ + +LS + + L A Sbjct: 583 QERVDALEADAVRGADAAEYLARIEELQQQVKELSGRLAEPREELSRLAAPREAPADEAA 642 Query: 498 LQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 ++ +++ +I +N++ +L + + P ++ E G Sbjct: 643 VRALEEKIGALNDEIEARDNQIAELRELVDGMPAQPAEADPAQLAALEEENG-------- 694 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 R G A ++A R +A L + L+++ ++++ +A A G+A Sbjct: 695 ----RLRGELQALSDALEALRRSSADEARGLRSQVAHLNKEVSDLKEALANARASGDASD 750 Query: 614 TAILISILHEVHIQIHQIESQ 634 L E+ Q+ + Q Sbjct: 751 VE----RLVELQEQLEDAQEQ 767 Score = 41.4 bits (95), Expect = 0.44, Method: Composition-based stats. Identities = 27/242 (11%), Positives = 81/242 (33%), Gaps = 29/242 (11%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++D+++ L + + ++ G + L L ++ RE Sbjct: 327 IDGLKDKIRALQSELAEKERDIRALNERLTTVPSPTGDAAILADYENKISALREELEARE 386 Query: 485 AAL--LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + L L ++ +++ L + + ++ + + + + + + + + Sbjct: 387 SDLSGLRPIVEKTKAFEDELASLRSML--DERDARIAELEQATASQDEAYATQILEEEVE 444 Query: 543 ---------ERGFGELLKQLDR------QVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + L +L+ + D A + I ++ +A + + Sbjct: 445 SLRQALLAKDGELEALQSRLEEALARGGEAPDLDAVIAAKNSEIARLQDLVMRAESAQRS 504 Query: 588 FRLLSRQKEEIEKQIAQVTAK------GEAEKTAILISILHEVHIQI----HQIESQEAM 637 ++ ++E QIA + G+ E+ L + ++ ++ I+ +E Sbjct: 505 SAEGDKRVAQLEAQIAGLERLLADAQGGDDERAKELNEQIADLQFELSSAKQDIDEREDE 564 Query: 638 IE 639 IE Sbjct: 565 IE 566 Score = 37.9 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 29/256 (11%), Positives = 69/256 (26%), Gaps = 17/256 (6%) Query: 396 NTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 N + L+ + ++D+ LR D Q + + E R Sbjct: 1286 NKLEASEATVRELRESVEALQDE-LRALAGSRAADGDLQKLVEQLEEDLSGARELVSERD 1344 Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNE 514 + + K E A+L + + E ++L Sbjct: 1345 AAIDELKQKLRDTEEYDDLKERIAELDDEIAVLNDSLKDKDAEIAELREQLEAQPTATTV 1404 Query: 515 LQKLWSFLFSDFVEQKYFLP-EEIHQRLCER-----GFGELLKQLDRQVRDAGLWSATTE 568 + + ++ + L + + L +Q D + Sbjct: 1405 YPESGEEVGDAAALREVQDENAALKDELEAKQSLIDELQGEIDGLKQQCSDLKDEMIKLD 1464 Query: 569 ANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 D Q +L K+ L + E ++ + + L L ++ + Sbjct: 1465 NANNDKITALQCSLDESRKQIADLQEEIEVLKGTANDI----DPAVVESLQEELRKLQEE 1520 Query: 628 IHQIESQ----EAMIE 639 + E+ +A+++ Sbjct: 1521 LDDRENTITELQALLD 1536 >gi|300174923|dbj|BAJ10696.1| hypothetical protein [Streptococcus thermophilus] Length = 362 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 22/91 (24%) Query: 8 IKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACC------PFHDEKTPSFHCNDSKGF 61 I+ + I + + + P HD SF Sbjct: 4 IEAVKQKA-ILEVAES-----------LGYSFKHLSGQVYEHPEHD----SFRIFADTNT 47 Query: 62 YYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 + FS V+GD + F+ + G SF +++ L Sbjct: 48 FKWFSRDVQGDVIDFVQLMTGVSFKKALSYL 78 >gi|221504944|gb|EEE30609.1| plectin, putative [Toxoplasma gondii VEG] Length = 2567 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 34/280 (12%), Positives = 83/280 (29%), Gaps = 23/280 (8%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK--DQKL 420 + A E + +L + + A + ++ ++ Sbjct: 2281 AQAQQFAASEATLQAALSEAEKKSLACEARMREELQNHVAAASRIKAEEESRMQFVLEQE 2340 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + + ++L++ F++ + S + + + ++ KG+ ++ Sbjct: 2341 KKKVAAEEAEKLRKTFERLWDQESAKMLQAYEAVARQLAEAQ-----RAMHAKGEELEEV 2395 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 REA ++ E + + + EL +L S E + Sbjct: 2396 KKREAEARRAALDATQEASEVQELREKLAARDAELSELRSANKEQTEELATVRANQ---- 2451 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIE 599 +L + + R+ + Q R R +RQ EE E Sbjct: 2452 ----------TRLAEEAARQREALEKQRDTLEKEREVLRGQVEDAKDRERERARQTEEQE 2501 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + A+ E E + L + ++ + + A E Sbjct: 2502 SCLRRALAEREDEARQTTL-RLQVLEEELETEKRRNASAE 2540 Score = 38.7 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 43/353 (12%), Positives = 104/353 (29%), Gaps = 22/353 (6%) Query: 287 CQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 ++ E +++ L ++ D K ++L L Sbjct: 1868 HAFATFRQDAARREEEREQEIQQLRDAMKKVEE--DQRGSLQPEKAKQLELELDAARAET 1925 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 D +R ++ + +R + ER +E Sbjct: 1926 DSLRREALELRDAAECLRMQ-LETARADQQQAAAAFEDRLRRAVDEEKEAFFAERRRVEA 1984 Query: 407 HLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRL 466 + ++ + R +A ++L ++ R + L Sbjct: 1985 THAEALTSLRAELSREQADRAAHEKLA---EELKACECALARERGEKEEAARAWQEELTL 2041 Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 + + K E +L + E ++LA++R + +L S L + Sbjct: 2042 ATRRQEEQEEEMKNKQAEIDVLNAM------QDELQEQLAELR---SRCSQLSSQLSAKE 2092 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 E EE+ +L + ++ + R A + E + +Q L Sbjct: 2093 EEAPRGRDEEMACM-----QRQLAETVEEKGRLASELATVREVYAQQSEEQKKQLEDLAL 2147 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ--IESQEAM 637 + R+ ++++++ VT E ++ L + + + ++ EA Sbjct: 2148 SLQASEREVADLQRRLEAVTLDVERQQQEAKAEHLRALEAKQSECMRKAGEAA 2200 >gi|220905283|ref|YP_002480595.1| replicative DNA helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869582|gb|ACL49917.1| replicative DNA helicase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 508 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 16/203 (7%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 F + G + ++G + ++ L++ E A+L ++ Sbjct: 17 GAPFGQNGASGRGGRGGQSGQGSFKARQGSAADRAEADLLRRVPPHSVE-AEQAVLGGVL 75 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL----PEEIHQR--LCERGF 546 P ++ +LA + ++ + + E + R L E G Sbjct: 76 MRPQLMHAIVDQLAAEDFYVPTHATIYGAFLELYRKSAPIDLLSTAEMLKSRNALEEAGG 135 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQG---------YQQALALYKRFRLLSRQKEE 597 L L + V Q L + E+ Sbjct: 136 AVYLGDLAQAVVSGANAEYYATIVRDKALQRGLIEACSGIITNCYDASLEVGTLLDESEQ 195 Query: 598 IEKQIAQVTAKGEAEKTAILISI 620 I+Q T+ + T L+ Sbjct: 196 AVFAISQRTSGRDFTPTRELLDR 218 >gi|5032311|ref|NP_004013.1| dystrophin Dp140ab isoform [Homo sapiens] Length = 1230 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 47/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 69 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 124 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 125 WLEAKEEAEQVLGQARAKLESWKEGPYTVDAIQKKITETKQLAKDLRQWQTNVDVANDLA 184 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 185 LKLLRDYSADDTRKVHMITENINASWRSIHKRVSEREAALEETHRLLQQF-PLDLEKFLA 243 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ ++ Sbjct: 244 WLTEAETTANVLQDATRKERLLEDSKGVKELMKQWQDLQGEIEAHTDVYHNLDENSQKIL 303 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 304 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQL 363 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 364 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 422 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 423 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEA 482 Query: 609 GEA 611 + Sbjct: 483 TDE 485 >gi|118086916|ref|XP_419170.2| PREDICTED: similar to TAFII105 [Gallus gallus] Length = 615 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 55/157 (35%), Gaps = 14/157 (8%) Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERG 545 L + ++ + AD + +E L + + + + Sbjct: 382 ILATNSELIGTVTRSCADEPFLLSE--ALQKKILNIGKRHDIMELNSDVVNLISHATQER 439 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ---I 602 LL++L + +E I V + L ++ L +Q+++ E++ + Sbjct: 440 LRGLLEKLTVIAQHRVSTHKGSETYI--VSSDTRAQLKFLEKLDHLEKQRKDEEEREMLL 497 Query: 603 AQVTAKGEAE--KTAILISILHEVHI-QIHQIESQEA 636 ++ E + L + E+ ++ Q++ +EA Sbjct: 498 RAAKSRSNKEDPEHLRLKQKVKEMQQLELAQMQQREA 534 >gi|302870468|ref|YP_003839105.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029] gi|302573327|gb|ADL49529.1| ATP-dependent chaperone ClpB [Micromonospora aurantiaca ATCC 27029] Length = 879 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 78/214 (36%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R ++ + +++ + ++ ++++AL+ + ++H Sbjct: 325 YRKHIEKDAALERRFQPVVVDEPSVEDAISILRGLRERLEVFHGVRIQDSALVSAVTLSH 384 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + L + + S E + + E L + D Sbjct: 385 RYISDRFLPD-KAIDLVDEACAMLRTEIDSQPAELDAASRRLMRLEIEEAA----LAKED 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 A L E D+R A ++ R R+ +E+ ++I QV + EA + Sbjct: 440 DPASKARLDQLRKELA--DLRGEVDAMRAQWQAERQAIRRVQELREEIEQVRVEAEAAER 497 Query: 615 A---ILISILH-----EVHIQIHQIESQEAMIEG 640 + L E+ ++ E + A +G Sbjct: 498 NYDLNTAAELRHGKLPELERRLQAEEERLAAKQG 531 >gi|218282106|ref|ZP_03488405.1| hypothetical protein EUBIFOR_00980 [Eubacterium biforme DSM 3989] gi|218216899|gb|EEC90437.1| hypothetical protein EUBIFOR_00980 [Eubacterium biforme DSM 3989] Length = 448 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 66/168 (39%), Gaps = 18/168 (10%) Query: 483 REAALLLTLINHPAILQEQYQ-ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 E ++L +L+ +P ++Q+ + +L + Q+++ + + + + RL Sbjct: 11 LEQSVLGSLMVYPRVIQDCQELDLHAEEFYLPSHQQIYQAICTIHENGQPIDMNTVVTRL 70 Query: 542 CERGFGELLKQLDRQVR--DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----- 594 E E + D +R D+ + SAT+ + I ++ Q L +S + Sbjct: 71 QETDQLESSQGTDYIIRLADSAISSATSRSYIETIKNK-AQLRRLIYVADKISEEGYSSG 129 Query: 595 ------KEEIEK---QIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 ++ E+ + + E E + +++ + ++ ++ Sbjct: 130 EDIDTVLDDAERLVMDVTRHRRGSEFESSEEIVTRVINELKELRTMKG 177 >gi|260829391|ref|XP_002609645.1| hypothetical protein BRAFLDRAFT_123563 [Branchiostoma floridae] gi|229295007|gb|EEN65655.1| hypothetical protein BRAFLDRAFT_123563 [Branchiostoma floridae] Length = 976 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 27/274 (9%), Positives = 76/274 (27%), Gaps = 25/274 (9%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 K + + + I D + + Y + Q Q+ + Sbjct: 468 FSIKMALSTMCAGKLHKATSFITSSSDIFSQISDSRGQLVY-----PKFDQFLQEALALP 522 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSL-----VKGKLSKKPSLREAALLLTLINHPAIL 498 S K Q + ++ V P L L+ + N Sbjct: 523 SAVYEGPSFGYNETAAKSCFQSAQRVTINDFLDVMMADPGPPCLVWLPLMHRMANVENAF 582 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKY-----FLPEEIHQRLCERGFGELLKQL 553 + ++E + + + EQ + + G L Sbjct: 583 P--VDTMDSTTRMDDEHRLIARYAARLAAEQNEQNTTPVDVSPLLHQSRSPGTELALNLD 640 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALA--------LYKRFRLLSRQKEEIEKQIAQV 605 + + + + + +V + Q L + R + R+ + + ++ + Sbjct: 641 ANRQQRELIAELEHKNSPREVAEKLAQWLREQTDLLSECQHKNREIMREIQRLRQEHDEA 700 Query: 606 TAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + + + L++ L + + ++E + + ++ Sbjct: 701 SRGMDESRNPTLLAELRLLRQRKDELELRMSALQ 734 >gi|254167406|ref|ZP_04874258.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469] gi|197623669|gb|EDY36232.1| hypothetical protein ABOONEI_2219 [Aciduliprofundum boonei T469] Length = 593 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 72/207 (34%), Gaps = 7/207 (3%) Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +L+ L ++ + + + + ++ K+ LRE + L Sbjct: 117 KLKTLLDVEFSKREELEKEIETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLE 176 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGE 548 +L+ + Q +A++ + EL++L + V+ E+ + L + E Sbjct: 177 SEKRRKLLELESQNMANL--SDKELEELKEAIKDGNVKALTEKITELTKELEMKNKELEE 234 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L ++ E + ++ L R + + Q ++++ ++ Sbjct: 235 LKNEIK---IKEDEMKKLQEMLKYKEDELIRREEDLLYREKKIEAQIKQLQMIKQEIGNM 291 Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635 E L + E+ + ++ ++E Sbjct: 292 DEIILKRRLEDLQEEIKRKEEELRAKE 318 Score = 42.2 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++E +++ + + + + + + E + E+ L K+++ Sbjct: 86 EEVEEIREKVEEAKKSVPGNVDVDQLIEENLKLKTLLDVEFSKREELEKEIETLRKEIET 145 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY---KRFRLLS-----------RQKEEIEKQ 601 + + ++ L KR +LL ++ EE+++ Sbjct: 146 LKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLSDKELEELKEA 205 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 I K EK L L + ++ +++++ + E Sbjct: 206 IKDGNVKALTEKITELTKELEMKNKELEELKNEIKIKE 243 >gi|157111095|ref|XP_001651387.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108878533|gb|EAT42758.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] Length = 1963 Score = 45.6 bits (106), Expect = 0.025, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1575 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1634 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1635 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1687 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + +T L Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNAL 1807 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++ES+ Sbjct: 1808 KGGKKAIQKLEQRVRELESE 1827 Score = 43.0 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 40/329 (12%), Positives = 95/329 (28%), Gaps = 23/329 (6%) Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + ID + R D + + K E L ++ D+ Sbjct: 1568 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1627 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440 + + E + + + ++ ++ I +R Q + Sbjct: 1628 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1687 Query: 441 TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E + R +Q+ ++L + S ++ E+ L + +L Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 E + + +L L + E++ + L ++ EL +LD Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDDAET 1804 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKR--------FRLLSRQKEEI--EKQIAQVTAK 608 +A + + + L +R R R+ +E+ + + + + Sbjct: 1805 NALKGGKKAIQKLEQRVRELESELDSEQRRHTDAQKNLRKSERRIKELTFQSEEDRKNHE 1864 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAM 637 + L + QI + E A+ Sbjct: 1865 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1893 >gi|260440879|ref|ZP_05794695.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2] gi|291044204|ref|ZP_06569913.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2] gi|291011098|gb|EFE03094.1| replicative DNA helicase [Neisseria gonorrhoeae DGI2] Length = 468 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|239998650|ref|ZP_04718574.1| replicative DNA helicase [Neisseria gonorrhoeae 35/02] gi|240115303|ref|ZP_04729365.1| replicative DNA helicase [Neisseria gonorrhoeae PID18] Length = 462 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E ++L ++ +PA ++ + +E + ++ + Sbjct: 2 PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + + + L ++L+ L + + Y + + Sbjct: 61 KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166 >gi|254166619|ref|ZP_04873473.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469] gi|289596331|ref|YP_003483027.1| RecA-superfamily ATPase implicated in signal transduction-like protein [Aciduliprofundum boonei T469] gi|197624229|gb|EDY36790.1| hypothetical protein ABOONEI_1711 [Aciduliprofundum boonei T469] gi|289534118|gb|ADD08465.1| RecA-superfamily ATPase implicated in signal transduction-like protein [Aciduliprofundum boonei T469] Length = 593 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 72/207 (34%), Gaps = 7/207 (3%) Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +L+ L ++ + + + + ++ K+ LRE + L Sbjct: 117 KLKTLLDVEFSKREELEKEIETLRKEIETLKEELTKPLPEDIRELKKKEIELREELIRLE 176 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGE 548 +L+ + Q +A++ + EL++L + V+ E+ + L + E Sbjct: 177 SEKRRKLLELESQNMANL--SDKELEELKEAIKDGNVKALTEKITELTKELEMKNKELEE 234 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L ++ E + ++ L R + + Q ++++ ++ Sbjct: 235 LKNEIK---IKEDEMKKLQEMLKYKEDELIRREEDLLYREKKIEAQIKQLQMIKQEIGNM 291 Query: 609 GEAEKTAILISILHEVHIQIHQIESQE 635 E L + E+ + ++ ++E Sbjct: 292 DEIILKRRLEDLQEEIKRKEEELRAKE 318 Score = 42.2 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 19/158 (12%), Positives = 54/158 (34%), Gaps = 14/158 (8%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 ++E +++ + + + + + + E + E+ L K+++ Sbjct: 86 EEVEEIREKVEEAKKSVPGNVDVDQLIEENLKLKTLLDVEFSKREELEKEIETLRKEIET 145 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALY---KRFRLLS-----------RQKEEIEKQ 601 + + ++ L KR +LL ++ EE+++ Sbjct: 146 LKEELTKPLPEDIRELKKKEIELREELIRLESEKRRKLLELESQNMANLSDKELEELKEA 205 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 I K EK L L + ++ +++++ + E Sbjct: 206 IKDGNVKALTEKITELTKELEMKNKELEELKNEIKIKE 243 >gi|109085772|ref|XP_001101161.1| PREDICTED: leucine zipper putative tumor suppressor 1-like [Macaca mulatta] Length = 596 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 36/250 (14%), Positives = 81/250 (32%), Gaps = 29/250 (11%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R + + L + G K ++ + SQR Q ++ Sbjct: 279 KLQRSLEEKELASSLAYEERPRRCRDELEGPEPKGGSKLKQASQKSQRAQQVLHLQVLQL 338 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDN-NELQK--------------LWSFL 522 ++ + L +L+ +L+ + + + L++ L L Sbjct: 339 QQEKRQLRQELESLMKEQDLLETKLRSYEREKTSFGPALEETQWEVCQKSGEISLLKQQL 398 Query: 523 FSDFVE--QKYFLPEEIHQRLCE-----RGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 E K + +L + G + L+ +R GL E +++ Sbjct: 399 KESQTEVNAKASEILGLKAQLKDTRGKLEGLELRTQDLEGALRTKGLELEVCE---NELQ 455 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA---QVTAKGEAEKTAILISILHEVHIQIH-QI 631 + +A L ++ LL ++ +E+ Q A + E L L + ++ + Sbjct: 456 RKKNEAELLREKVNLLEQELQELRAQAALARDMVPPTFPEDVPALQRELERLRAELREER 515 Query: 632 ESQEAMIEGF 641 + + M GF Sbjct: 516 QGHDQMSSGF 525 >gi|119195685|ref|XP_001248446.1| hypothetical protein CIMG_02217 [Coccidioides immitis RS] Length = 1260 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 88/249 (35%), Gaps = 10/249 (4%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 E + + R+ LE + N ++D+ + + Q ++ R + Sbjct: 573 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 630 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506 ++++ + DQ + + + G+ + + E ++ + + E +L Sbjct: 631 GHFQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMVALNKSKDDMAAEYEGKLDT 690 Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + +L + +Q + + +L + ++ + Sbjct: 691 KKTELETKQ-GELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQS 749 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 EA ++ + + L + L ++ E+E++ ++ +K + + L EV Sbjct: 750 EVEAKQEEINRLKSE---LESKIAELEDKRRELEQKQGELESK--QTELQAIQDELREVK 804 Query: 626 IQIHQIESQ 634 ++ + +SQ Sbjct: 805 AELEEKKSQ 813 >gi|59800890|ref|YP_207602.1| replicative DNA helicase [Neisseria gonorrhoeae FA 1090] gi|59717785|gb|AAW89190.1| putative replicative DNA helicase [Neisseria gonorrhoeae FA 1090] Length = 468 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|5305170|emb|CAA69163.2| ClpB-homologue [Thermus thermophilus] Length = 508 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/204 (12%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA 496 + I + R ++ + +++ K ++ + ++A++ ++H Sbjct: 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG--------E 548 I + + + I + +L L S E +++ + E Sbjct: 372 ITERRLPD-KAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQE 430 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 LK ++ ++ A A R+ ++ R + R+ E E+Q Sbjct: 431 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQ------- 483 Query: 609 GEAEKTAIL-ISILHEVHIQIHQI 631 + + A L L ++ ++ + Sbjct: 484 YDLNRAAELRYGELPKLEAEVEAL 507 >gi|87300884|ref|ZP_01083726.1| peptide chain release factor 1 [Synechococcus sp. WH 5701] gi|87284755|gb|EAQ76707.1| peptide chain release factor 1 [Synechococcus sp. WH 5701] Length = 367 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN-IVDVRQGYQQALALYKRFRL 590 P + +RL + L+RQ+ D + + +E + R + ++ Sbjct: 1 MDPSLLRERLEAA--DRTFQALERQLADPAVAADPSELRRLSKERARLEPLATGLGHWQS 58 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 L RQ +E ++ Q +KG+ E A++ L E+ Q+ +E Q Sbjct: 59 LQRQLKEAQQLARQ--SKGDPEMEALIQEELRELGAQLDGLEQQ 100 >gi|309812358|ref|ZP_07706113.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185] gi|308433663|gb|EFP57540.1| ATP-dependent chaperone protein ClpB [Dermacoccus sp. Ellin185] Length = 900 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 20/208 (9%), Positives = 70/208 (33%), Gaps = 12/208 (5%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +++ I + R +++ + +++ + + K ++ + AL+ Sbjct: 327 YRENIEKDPALERRFQQVFVGEPSVEDTIAILRGLKERYEAHHKVAIADQALVAAATLSD 386 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLD 554 + + I + +L + + +++ + + EL L+ Sbjct: 387 RYITSRQLPDKAIDLIDEAASRLRMEI-----DSSPVEIDQLRRSVDRMNMEELHLESET 441 Query: 555 RQVRDAGLWSATTEANIVDVR-----QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 L + + + ++ A + L Q +++ Q ++ +G Sbjct: 442 DPASRDRLAKLRADRADTEEQLAALTARWEAEKASLNKVGDLKAQIDDLRTQAEKLQREG 501 Query: 610 EA-EKTAILISILHEVHIQIHQIESQEA 636 + + +L + + Q+ + ++ EA Sbjct: 502 DYGNASKLLYGDIPALEKQLDEAQAAEA 529 >gi|255693758|ref|ZP_05417433.1| putative mobilizable transposon, excision protein [Bacteroides finegoldii DSM 17565] gi|260620442|gb|EEX43313.1| putative mobilizable transposon, excision protein [Bacteroides finegoldii DSM 17565] Length = 330 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 24 YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSF---LSAL 80 Y ++ N W P DE SF N + +Y F G + L A Sbjct: 20 YSPVKQQGINL-----WYKSPLRDETEASFKVNTERNQWYDFGLGKGGGTIELAAHLYAT 74 Query: 81 LGCSFIESVQRLAAI 95 S++ ++R+A Sbjct: 75 DHVSYL--LERIAEQ 87 >gi|254516846|ref|ZP_05128904.1| replicative DNA helicase [gamma proteobacterium NOR5-3] gi|219674351|gb|EED30719.1| replicative DNA helicase [gamma proteobacterium NOR5-3] Length = 132 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 6/116 (5%) Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 Q+ S R + + KL + E ++L L+ + ++ + + + Sbjct: 6 PQRSQSNRPFDGDVARIKLQPQSVEAEQSVLGGLMISQDAWDGVAELVSPEDFYRPDHRL 65 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATT 567 ++ + + + + +L G L +L A AT Sbjct: 66 IFRQIRNLAEASQPVDVVTLADQLQLSGELDAAGGHAYLSELAENTPSASNIRATP 121 >gi|307546112|ref|YP_003898591.1| replicative DNA helicase [Halomonas elongata DSM 2581] gi|307218136|emb|CBV43406.1| replicative DNA helicase [Halomonas elongata DSM 2581] Length = 462 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 10/163 (6%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 K+ E ++L L+ A L + E + +++ + Sbjct: 8 DKETAALKVPPHSLEAEQSVLGGLMLDNAAWDNVADRLVADDFYRYEHRLIFNVMGQLAE 67 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 E + + + L R + + L A + + +A A R Sbjct: 68 EARPMDVVTLSEALEGRDQLDTVGGLAYLAELARNTPSASNI----------RAYADIVR 117 Query: 588 FRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 R R+ Q+A+ + L++ + QI + Sbjct: 118 ERATLRKLIRAANQVAESAFAPQGRPADELVNEAERLVFQISE 160 >gi|294010982|ref|YP_003544442.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S] gi|292674312|dbj|BAI95830.1| putative phage DNA primase/helicase [Sphingobium japonicum UT26S] Length = 482 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 38/289 (13%), Positives = 75/289 (25%), Gaps = 37/289 (12%) Query: 251 FFGALNYLQKSIRKDVRRNS--------SSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL 302 A + + + +I+VEG D L+ AG + VVS A Sbjct: 56 LDKARQAMDQGAPLTLLNIDCLSDESLAGQPLIIVEGEWDFLATLTAGKRRVVSVPNGAP 115 Query: 303 TEY----------QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGN 346 E + W+ ++L D D+PG A L Sbjct: 116 KEASGDDELQEGARYAWFWRHYDALSRIKSVILAVDNDEPGKALAADLCRLFGPE----R 171 Query: 347 RVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEI 406 + +DP+ + G +++ + P + + Sbjct: 172 CSFVEYPAGCKDPNDVVIHSGHQRLVEVLDAAKPYPVKGLYALDDFPEQPSYQAWPTGVG 231 Query: 407 HLKNCINHIKDQ-KLRYYYSQA-----IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 L + + Y+ + L L ++ I + K HR + Sbjct: 232 ELDELFQIVPRTFTVATGYAGQGKTSFLMWILANLIRRGIHVTAASFETDIKPIFHRKLR 291 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + + + K L + + P + L+ Sbjct: 292 AAILETGEFAQHEPKERDWADGMIRRYLAIISHSP---MDDEDALSVED 337 >gi|291231194|ref|XP_002735551.1| PREDICTED: janus kinase and microtubule interacting protein 1-like [Saccoglossus kowalevskii] Length = 3679 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 ++ ++L ++ ELQ+ L + + + L E +L L+K++ Sbjct: 1568 EDLREKLDEVEKSEKELQEKVLQLENSDKDLRDKLSELESAQLDSSNNEALMKEIKELEL 1627 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE--AEKTAI 616 + + + +++ +L ++ + L R +E+ K++A+++ + E E Sbjct: 1628 EVQRR---KDIEVDLKEDHFEELTSLQEQIQDLERTNQELRKKLAELSEELECIDELKKE 1684 Query: 617 LISILHEVHIQIHQIESQEA 636 +S + + +I +E+Q A Sbjct: 1685 HLSEVSNLQGKIKDLENQNA 1704 Score = 42.6 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 30/284 (10%), Positives = 88/284 (30%), Gaps = 18/284 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + E + + + + + + T R E + +DQ Sbjct: 1978 RIHELEELEGDLKDRISQLAEAERTAKDMLQEATVVYRENEEALKERIEQLEEDQGEMQG 2037 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK----GKLSKK 479 A+ + + + K N R +++ + Q+ + K + Sbjct: 2038 QIHALENLKAMMRGQIEDAEQHNKETQKANKRLQEKIEQFESGEQAHKDELNRMKKQLET 2097 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E +L +Q +++ N + L + + Sbjct: 2098 TEQAEK-------ESQKLLSQQLEDIQTESKSNE--KNLRDRVKELEYSDNELQNKLYET 2148 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQG---YQQALALYKRFRLLSRQKE 596 + + L+ + + + + + I ++ + ++ L + S + Sbjct: 2149 ETVKTELEDRLESAEIENKRVKESNNHLKEQIDELEEENSKLRRDLEDTQEKADESERIS 2208 Query: 597 -EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 E++ ++ + + G+ +K L ++ QI +++ E M++ Sbjct: 2209 SELKDRLHETESVGDMKKMEE-QKSLEKIQKQIEELQMSEEMLK 2251 Score = 40.6 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 31/291 (10%), Positives = 90/291 (30%), Gaps = 19/291 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + + + ++ + + + + EI +K I L+ Sbjct: 1766 KEHHLKDQLSESEVVIKTLNEKVQALQQQEVTLKKEVEKQEEIKVKASEREIATYSLQER 1825 Query: 424 Y--SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Q L+ + + +++ + R + + ++ L + + Sbjct: 1826 IAELQECESLLKAKIIELTESEESAKKNYQETLKDRIENEKAWKVKIKDLEDTEDKSRLR 1885 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP--EEIHQ 539 L+E ++ + ++ ++ + + ++ L E + ++ Q Sbjct: 1886 LQEMEVVEI-----DLREQLEAKVRENEVASEMWRQSEDLLNERVAELEELETVLKQRIQ 1940 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 L + + + W E++ + ++ + L + Q E E Sbjct: 1941 ELEDNESHLKQEIKQKTKETENTWKQAAESSTLAYQERIHELEELEGDLKDRISQLAEAE 2000 Query: 600 K----QIAQV------TAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + + + + E+ L E+ QIH +E+ +AM+ G Sbjct: 2001 RTAKDMLQEATVVYRENEEALKERIEQLEEDQGEMQGQIHALENLKAMMRG 2051 Score = 38.7 bits (88), Expect = 2.8, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 10/217 (4%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +L + ++ + + + ++ + K+ E Sbjct: 801 LDDCNKKIDELEEIIEDRKKSESKFHAMEDVYLKNESKLKDEIKLLKKQMSSDKEGRDYE 860 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK--YFLPEEIHQRLC 542 LL I ++++ Q++A + N+ LQ+ + ++ K + E+ Sbjct: 861 NELLFQKIAE---VRDEKQKVAILEESNSALQEKLDRVSDSSLQSKLDSLVKEDTLAAKE 917 Query: 543 ERGFGEL-LKQLDRQVRDAGLWSATTE--ANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 ++ LK + L + E A + + Q L L K L R+ E++ Sbjct: 918 GAESKQIELKSVMTLEELQHLKAKVDEIKAAHQKIAEMEQTELVLRKHIEALEREIVELQ 977 Query: 600 KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQ 634 + I + + I L E+ + Q E Q Sbjct: 978 ENIQHHESSYNEKVEEYEIREHTLKEISRKAEQAEVQ 1014 Score = 37.2 bits (84), Expect = 8.0, Method: Composition-based stats. Identities = 23/207 (11%), Positives = 59/207 (28%), Gaps = 17/207 (8%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 L + + + R A ++K L + + + E + T++ Sbjct: 1469 ADLKESNVRLVNQEQRLESVIAAAGEEKVKVLTKENDELTQKLEEAENRIEEQDIQETVL 1528 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + EL D + + K Q E L + Sbjct: 1529 K------KIINELEDSEKTS------RERIVELEESGKTVKAALDGQEKTSEDLREKLDE 1576 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYK---RFRLLSRQKEEIEKQIAQ--VTA 607 +++ ++ E + D+R + + L ++ +E+E ++ + Sbjct: 1577 VEKSEKELQEKVLQLENSDKDLRDKLSELESAQLDSSNNEALMKEIKELELEVQRRKDIE 1636 Query: 608 KGEAEKTAILISILHEVHIQIHQIESQ 634 E ++ L E + + + Sbjct: 1637 VDLKEDHFEELTSLQEQIQDLERTNQE 1663 >gi|240125396|ref|ZP_04738282.1| replicative DNA helicase [Neisseria gonorrhoeae SK-92-679] Length = 462 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E ++L ++ +PA ++ + +E + ++ + Sbjct: 2 PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + + + L ++L+ L + + Y + + Sbjct: 61 KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166 >gi|240016211|ref|ZP_04722751.1| replicative DNA helicase [Neisseria gonorrhoeae FA6140] Length = 468 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SITKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|42558933|sp|Q8HZ57|CCHCR_PANPA RecName: Full=Coiled-coil alpha-helical rod protein 1; AltName: Full=Alpha-helical coiled-coil rod protein gi|23296172|gb|AAN12282.1| HCR [Pan paniscus] Length = 782 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 30/277 (10%), Positives = 89/277 (32%), Gaps = 17/277 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLR 421 + +L+V ++ + + + ++ I+ R Sbjct: 421 QTASAEEQLRLVVNAVSSSQIWLETTMAKVEEAAAQLPSLNNRLSYAVRKVHTIRGLIAR 480 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +R L + ++ R + S RL+Q + + + + Sbjct: 481 KLALAQLRQESCPLPPPVADVSLELQQLREERNRLDAELQLSARLIQQEVGRAREQGE-- 538 Query: 482 LREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 E L + LQ+ + LA + ++ ++ + Q Sbjct: 539 -AERQQLSKVAQQLERELQQTQESLASLGLQLEVARQ--------GQQESTEEAASLRQE 589 Query: 541 LCERGF---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L ++ L +++ + TE + + R+ + +A+ ++ + + Q++E Sbjct: 590 LTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRRAAQEKE 649 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ ++ + E+ L L E+ + + + Sbjct: 650 RSQELRRLQEEARKEEGQRLARRLQELERDKNLMLAT 686 >gi|227908806|ref|NP_001020274.2| EF-hand calcium-binding domain-containing protein 4A [Mus musculus] gi|142983446|sp|Q80ZJ8|EFC4A_MOUSE RecName: Full=EF-hand calcium-binding domain-containing protein 4A gi|148686148|gb|EDL18095.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus] gi|148686150|gb|EDL18097.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus] gi|148686152|gb|EDL18099.1| EF-hand calcium binding domain 4A, isoform CRA_b [Mus musculus] Length = 394 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%) Query: 524 SDFVEQKYFLPEEIHQRLCERGFGE------LLKQLDRQVRDAGLWSATTEANIVDVRQG 577 S +E E + Q L R L ++L++Q+ + + + R Sbjct: 176 SACLEAAAREREGLEQALRRRESEHEREVRGLYEELEQQLGEQRHRRQSQNLPREEQRGH 235 Query: 578 YQQALALYKRFRLLSR---QKEEIEKQIAQ--VTAKGEAEKTAILISILHEVHIQIHQIE 632 L L R + L R ++ E+E+Q+ + L + Q+ Q + Sbjct: 236 L--ELELQTREQELERAGLRQRELEQQLQARAAEQLEAQAQHIQLQRAYEAIRAQLDQAQ 293 Query: 633 SQEAMIEGFGKMSGR 647 Q + +E G+ GR Sbjct: 294 EQLSRLE--GEAQGR 306 >gi|220930523|ref|YP_002507432.1| hypothetical protein Ccel_3161 [Clostridium cellulolyticum H10] gi|220000851|gb|ACL77452.1| zinc finger CHC2-family protein [Clostridium cellulolyticum H10] Length = 340 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 40/101 (39%), Gaps = 12/101 (11%) Query: 28 DRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIE 87 ++R +N ++ + +D+K +YC++ G + FL S+++ Sbjct: 29 EKRGSNYHIKNHGGL-----------YIDDAKNSFYCWAAERGGGPIQFLMFTENKSWLD 77 Query: 88 SVQRLAAIAGV-PLPVVDPKIEKKEKIQTDLIRLIEVATDF 127 S++ L + K K + + +L + A+ + Sbjct: 78 SMKYLIGDGEMQQTQEASLKQHKPIEKKQVEFKLPDKASQY 118 >gi|107099082|ref|ZP_01363000.1| hypothetical protein PaerPA_01000091 [Pseudomonas aeruginosa PACS2] Length = 902 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + + + E+ L Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEVRLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|15595288|ref|NP_248780.1| ClpV1 [Pseudomonas aeruginosa PAO1] gi|81542104|sp|Q9I742|CLPV1_PSEAE RecName: Full=Protein ClpV1 gi|9945915|gb|AAG03480.1|AE004447_13 ClpV1 [Pseudomonas aeruginosa PAO1] Length = 902 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 16/141 (11%), Positives = 42/141 (29%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEEIEKQ------------------------IAQVTAKGEAEKTAIL 617 +R L ++ E ++ + + + + E+ L Sbjct: 482 AEERERLAALEQRWAEEKRLVDELLETRARLRAAAEAVDAGGVPLGEGEVRLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|326933380|ref|XP_003212783.1| PREDICTED: centrosomal protein of 164 kDa-like [Meleagris gallopavo] Length = 1140 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 29/332 (8%), Positives = 94/332 (28%), Gaps = 70/332 (21%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + +E L V ++ E + + + I+ +K Sbjct: 413 QELALQKLREEWESLQVMEKENMERKKLLALEKMKLEMEEAQQK---------ETIRLEK 463 Query: 420 LRYYYSQAIRDRL------------QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM 467 + + + +++RL +Q + S +K + + Sbjct: 464 EKEQFLRELKERLEMEKKKAAEELEKQFATELQQLKSAAEEKHRKVTSSLQTQIAEAQRS 523 Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN--------ELQKLW 519 Q + ++ L + + + + ++ ++ D+ E Q++ Sbjct: 524 QEAWLREDLQRAEEKVQQKAYQVAEYERELSELMSEKRHEVEKDHERKMERMKEEHQEVL 583 Query: 520 SFLFSDFVEQKYFLPEEIHQ----------RLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + + E++ E+ + +L E L +LD ++ + Sbjct: 584 ARIQDQYEEEERKQRAELFEGLRGEMARLRQLHEVEVKTLQAELDERLAALQHRHGEKQR 643 Query: 570 NIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE--------- 612 + D + +++ L + L R+K+++ + + + + Sbjct: 644 RLQDSENELEIRAKNIKARSMQLLSQEESLRRKKQQLLDEDKRTERERDEAALTSQLRLE 703 Query: 613 --------------KTAILISILHEVHIQIHQ 630 + + L + ++ Sbjct: 704 ENRKEHANLLESIWQLRKALEELQDQKAELEA 735 Score = 42.2 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 87/273 (31%), Gaps = 15/273 (5%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 +KL + + L + + R E L I + + IR Sbjct: 354 TQKLYEQKEKSLRTLKEDLAKVCEEEELRVRKEETERLSRLRATITSETEAE--KEKIRA 411 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + QK E K+N + + ++ + K + + + L Sbjct: 412 EQELALQKLREEWESLQVMEKENMERKKLLALEKMKLEMEEAQQKETIRLEKEKEQFLRE 471 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL------CER 544 L + +++ E + ++ L S E+ + + ++ E Sbjct: 472 LKERLEMEKKKAAEELEKQFATE-----LQQLKSAAEEKHRKVTSSLQTQIAEAQRSQEA 526 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL--YKRFRLLSRQKEEIEKQI 602 E L++ + +V+ A E + ++ + + ++ + + +E+ +I Sbjct: 527 WLREDLQRAEEKVQQKAYQVAEYERELSELMSEKRHEVEKDHERKMERMKEEHQEVLARI 586 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + E ++ A L L ++ Q+ E Sbjct: 587 QDQYEEEERKQRAELFEGLRGEMARLRQLHEVE 619 >gi|324505586|gb|ADY42399.1| Epidermal growth factor receptor substrate [Ascaris suum] Length = 752 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 6/136 (4%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR----LCERGFGELLKQLDRQVRDAG 561 I N EL L + E++ + + L +L Sbjct: 402 EAISSGNEELDALQQEVQKLIAERREADQAIVQLEADMTVKNSEIKNLQIELTTLENTVA 461 Query: 562 LWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA--QVTAKGEAEKTAILIS 619 ++ Q L L + +E E ++ + E A Sbjct: 462 QLERQKAEAERRLQALDNQIAQLESTGEHLKVKLQEEEARLNALRTENARSKENAAKENE 521 Query: 620 ILHEVHIQIHQIESQE 635 L + Q+ ++ Q+ Sbjct: 522 ELMKAQEQLRSLQEQQ 537 Score = 39.9 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANI----VDVRQGYQQALALYKRFRLLSRQKEEIE 599 + +++L + R+A EA++ +++ + L L RQK E E Sbjct: 412 DALQQEVQKLIAERREADQAIVQLEADMTVKNSEIKNLQIELTTLENTVAQLERQKAEAE 471 Query: 600 KQIAQVTAKGEAEKT--AILISILHEVHIQIHQIESQEA 636 +++ + + ++ L L E +++ + ++ A Sbjct: 472 RRLQALDNQIAQLESTGEHLKVKLQEEEARLNALRTENA 510 >gi|325298264|ref|YP_004258181.1| DNA primase [Bacteroides salanitronis DSM 18170] gi|324317817|gb|ADY35708.1| DNA primase [Bacteroides salanitronis DSM 18170] Length = 289 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 81/265 (30%), Gaps = 21/265 (7%) Query: 34 AVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLG---CSFIESVQ 90 + W P +E SF N + ++ F GD ++ S L G S++ ++ Sbjct: 25 QCGANLWYRSPLREETDASFKVNTALNKWFDFGIGKGGDLIALASELYGSKDVSYL--LR 82 Query: 91 RLAAIAGVPLPVVDPKIEKKEKIQTDLI--RLIEVAT-DFFHHSLKNARDKRLHYYLDER 147 ++ + A P+ DP K+EK + ++E+A+ + + + + Sbjct: 83 QIGSQAPHACPMTDPF-PKREKPKPAFQDVEVMELASPALYRYLKERGIEAETARKECRE 141 Query: 148 GIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLI 207 + + P+ +R + F +A I + Sbjct: 142 IRYGLGGKRYFAVGFPNMNGG--YEIRNRYFKACISPKAVSYIREPEGKRPMCCLFEGFM 199 Query: 208 FPIRSSRGQVIAFGGRTLSKGESVKYLNS--------PETILFHKGKNLYNFFGALNYLQ 259 + Q G G LNS P + + + + A Sbjct: 200 DYLSFLTLQKKGVEG--FQPGCDHIVLNSVANLAKAVPLLDGYKEIRCFLDNDRAGKDAL 257 Query: 260 KSIRKDVRRNSSSFIILVEGYMDVL 284 K++R+ + + D+ Sbjct: 258 KNLRETYGGHVKDESFKYSTWKDLN 282 >gi|312142471|ref|YP_003993917.1| hypothetical protein Halsa_0067 [Halanaerobium sp. 'sapolanicus'] gi|311903122|gb|ADQ13563.1| hypothetical protein Halsa_0067 [Halanaerobium sp. 'sapolanicus'] Length = 152 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 55 CNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQ 114 + K Y C C KG + + S GC+F ES+Q + + L E Sbjct: 62 IDPIKNTYQCNKCGSKGTIIEWYSKAHGCNFSESIQYINDYYNLNLLKD-----IDESNM 116 Query: 115 TDLIRLIEVATDFFHHSL 132 +++L+E D + SL Sbjct: 117 NRIMKLVENYNDLYIKSL 134 >gi|293399403|ref|ZP_06643556.1| replicative DNA helicase [Neisseria gonorrhoeae F62] gi|291609972|gb|EFF39094.1| replicative DNA helicase [Neisseria gonorrhoeae F62] Length = 468 Score = 45.6 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|317138239|ref|XP_001816777.2| DNA repair protein Rad50 [Aspergillus oryzae RIB40] Length = 1448 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 23/295 (7%) Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 ED + ++ E E +R EL L++ Sbjct: 843 DDEDVKNLEEDLEAARSASTSYDTWSRFQQTEIPELEKEEEQYVLQRDELLNQLEDRDKI 902 Query: 415 IKDQKLRYYYSQAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467 + ++ + +A+ R + ++ + R + + + Sbjct: 903 VSEKTEKKRDVEALAKTVNTIVRYDGEIKSIRSQIQDLSSKQQDTTSARTLEDIQEEIAA 962 Query: 468 ---QSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523 +S +K LSK +E T IN+ + L++ L + ++ L + + Sbjct: 963 IGEKSRALKKSLSKLTHEKEQT--QTEINNLELQLRDVKSNLDNAKFQLERKSDLLARI- 1019 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 ++ E I + +R +L +L + S EA +++Q Q Sbjct: 1020 EEYKNLNNQQREAIAKA--DRDIEDLTPELLKVQAKYDDISQRAEAREREMQQTISQMSE 1077 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 Q E ++I +G + L + QI Q+E+++A I Sbjct: 1078 SVH-------QLELANEEIDAYNERGGPTQLERSKRELENIEKQIGQLEAEQANI 1125 >gi|229163542|ref|ZP_04291492.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803] gi|228619924|gb|EEK76800.1| hypothetical protein bcere0009_43080 [Bacillus cereus R309803] Length = 786 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIVEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKVQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|170723511|ref|YP_001751199.1| virulence-associated protein E [Pseudomonas putida W619] gi|169761514|gb|ACA74830.1| virulence-associated protein E [Pseudomonas putida W619] Length = 136 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 8/73 (10%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MN P + L + +I + + ACCP H +K+PS +++ Sbjct: 1 MNIPSQRLSALTGSACLEKVISRLDKVKSAGA----SKWIACCPAHLDKSPSLKISETSD 56 Query: 61 ---FYYCF-SCHV 69 C+ C Sbjct: 57 GVVLIKCWAGCSA 69 >gi|240013771|ref|ZP_04720684.1| replicative DNA helicase [Neisseria gonorrhoeae DGI18] gi|240120839|ref|ZP_04733801.1| replicative DNA helicase [Neisseria gonorrhoeae PID24-1] Length = 462 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E ++L ++ +PA ++ + +E + ++ + Sbjct: 2 PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDRIADVVSGEDFYRHEHRLIFRSIA 60 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + + + L ++L+ L + + Y + + Sbjct: 61 KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166 >gi|126238333|gb|ABO07440.1| paramyosin [Dictyocaulus viviparus] Length = 876 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 32/273 (11%), Positives = 90/273 (32%), Gaps = 23/273 (8%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 D + E+ + + + +R L+ + + + DQK Sbjct: 166 DQVQKDKHIAEKAAERFEAQSIELSNKVEDLNRHVNDLAQQRQRLQAENNDLLKEVHDQK 225 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 ++ Q ++ L Q ++ R + Q ++++L + ++ Sbjct: 226 VQLDNLQHVKYTLAQQLEEARRRLEDAERERSQLQSQLHQVQLELDSVRTALDEESAARS 285 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 + + + I Q + + A++ + E++ L + E Sbjct: 286 DAEH-----KLNLANTEITQWKSKFDAEVALHHEEVEDLRKKMLQKQAEY---------- 330 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E +L+++ + + + E IVD+ + L + L +Q E++ Sbjct: 331 ---EEQIEIMLQKISQLEKAKSRLQSEVEVLIVDLEKAQNTIAILERAKEQLEKQCAELK 387 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +I ++ + L V+ ++ +++ Sbjct: 388 VRIDELNVE-----LEAAQRELRAVNAELQKMK 415 >gi|118411003|ref|YP_874398.1| DNA replication helicase [Phaeodactylum tricornutum] gi|116739750|gb|ABK20621.1| DNA replication helicase [Phaeodactylum tricornutum] Length = 460 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 19/181 (10%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSF 521 L+ K L E +L L+ + ++ ++L + Q+++ Sbjct: 2 QQTPFNVDQLIIDKYLPHNFLAEKMILSCLLINSEAIEITLRKLPYEAFYFKNHQEIYKA 61 Query: 522 LFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANI 571 + + +K + L + G EL+ Q+ V S + I Sbjct: 62 VMILYKNKKCIDILTLLTFLQDNGLLQKIGGVKVLIELMSQIPNLVYLEEYISLVKDKFI 121 Query: 572 ---------VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 + GY L L + + + +I AE + L Sbjct: 122 RRSLIKLGYEVINSGYITNLPLEQILGDFENKLFNLTNEITSQKLFSSAELLNNIFFELK 181 Query: 623 E 623 E Sbjct: 182 E 182 >gi|313825593|gb|EFS63307.1| DivIVA domain protein [Propionibacterium acnes HL063PA1] Length = 361 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 47/148 (31%), Gaps = 3/148 (2%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 I + + + +N L+ L S ++ + ++ Sbjct: 23 YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEALRSSEPGEQRPDQDLLN---ENEHLRA 79 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +++L Q + S + + ++A L + L Q EE+ + + Sbjct: 80 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + + A L S + Q+ +S A Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167 >gi|237711317|ref|ZP_04541798.1| DNA primase [Bacteroides sp. 9_1_42FAA] gi|229454012|gb|EEO59733.1| DNA primase [Bacteroides sp. 9_1_42FAA] Length = 323 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 8/68 (11%) Query: 7 FIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYC 64 I+D+ I +++ + Y ++ N W P +E SF N +Y Sbjct: 2 TIQDVKQ-IKLADYLQSLGYTPVKQQGKNL-----WYKSPLREETDASFKVNTELEKWYD 55 Query: 65 FSCHVKGD 72 F G+ Sbjct: 56 FGIGKGGN 63 >gi|197294373|ref|YP_001798914.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] gi|171853700|emb|CAM11590.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] Length = 427 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 17/147 (11%), Positives = 46/147 (31%), Gaps = 17/147 (11%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL L+ +P + + + N + + ++ + ++ + + L Sbjct: 4 AERALLGALLLNPEKMDVVINLVNTNNFSNPKHRCIFETMKQLKLQNREIDYVTVGSVLD 63 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L + L + + + Y + + L +++ ++ Sbjct: 64 NN--------LYKIGGIDYLIELVEGSPASEYLETYIDLIKENSLKKDLLGLIKQLPSEL 115 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIH 629 + KT + + L V Q+ Sbjct: 116 S---------KTKNIHNYLQTVKNQVE 133 >gi|167006318|ref|YP_001661541.1| replicative DNA helicase [Streptomyces sp. HK1] gi|166162400|gb|ABY83521.1| probable replicative DNA helicase [Streptomyces sp. HK1] Length = 460 Score = 45.6 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 9/93 (9%), Positives = 26/93 (27%), Gaps = 1/93 (1%) Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA-DIRYDN 512 R Q + ++ + E +L +I +++ + L + Sbjct: 4 RRLAGQHPAVASEGPGASALERMPPQDIAAERTVLGCMILSKDAIRDAAEVLEGPSDFYR 63 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 ++ + + + P + L G Sbjct: 64 PAHATIYLAILDMYGRDEPVDPITLTAELTRSG 96 >gi|326674234|ref|XP_687391.4| PREDICTED: myosin-XVIIIa [Danio rerio] Length = 2218 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 37/315 (11%), Positives = 93/315 (29%), Gaps = 21/315 (6%) Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKR 388 A K + + ++ + L+ D D + ++ ++ KR Sbjct: 1331 DAMKKQTESMEMEVMEARLIRASELNGEMDDDDTG-----GEWRLKYERAIREIEFTKKR 1385 Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 + E+ + + D + +Q ++ + Q+L + Sbjct: 1386 LQQEFDDKLEVEQQNKRQLERKLTDLQADNEEVQRVAQQLKKKCQRLTAELQDTKLHLEG 1445 Query: 449 YWKKNARHRDQKGP---SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 +N ++ Q Q + + K ++ RE +L E + Sbjct: 1446 QQSRNHDLEKKQRKFDSEQTQAQEEVQREKSQREKLSREKDMLT---------GEVFSLR 1496 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + E+ + L E + +E + L+ L+ +V+D Sbjct: 1497 QQLEDKDLEICAVNLKLEQMEAELQDLNSQESKDEASLAKIKKQLRDLEAKVKDQEEELD 1556 Query: 566 TTEANI---VDVRQGYQQALALYKRFRLLSRQKEEIE-KQIAQVTAKGEAEKTAILISIL 621 I + + + ++ + +E E ++I Q +K + L Sbjct: 1557 EQAGTIQMLEQAKLRLEMEMERLRQTHSKEIESKEDEVEEIRQSCSKKLKQMEVQLEEEY 1616 Query: 622 HEVHIQIHQIESQEA 636 + + + EA Sbjct: 1617 EDKQKVLREKRDMEA 1631 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 65/183 (35%), Gaps = 13/183 (7%) Query: 456 HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNEL 515 + ++ ++L + K L + + + + H A + + Q LA I Sbjct: 1721 SKSKQALEEQLSRLQREKNDLQSRMEEDQEDMNELMKKHKAAVAQSSQNLAQIS------ 1774 Query: 516 QKLWSFLFSDFVEQKYFLPE--EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 L + L E++ + + +L + + K L V E + Sbjct: 1775 -DLQAQLEEAMKEKQDVQEKLTALQSQLEFQEQSMVDKSL---VSRQEAKIRELETKLEF 1830 Query: 574 VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + ++ +L R + + E E+ + E E+ L+ + ++ ++ ++ Sbjct: 1831 EKTQVKRLESLVARLKENLEKLTE-ERDQRSASENREKEQNKRLLRQIRDIKEEMAELAK 1889 Query: 634 QEA 636 +EA Sbjct: 1890 KEA 1892 Score = 37.9 bits (86), Expect = 4.9, Method: Composition-based stats. Identities = 26/256 (10%), Positives = 83/256 (32%), Gaps = 12/256 (4%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 +N+ + A K+ I+D ++ + L++ + E + Sbjct: 1685 LKNQLEESEFTCAAAVKARKSMEVEIEDLHVQMDDISKSKQALEEQLSRLQREKNDLQSR 1744 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 +++ ++ + + + + S +A L + + ++ + + Sbjct: 1745 MEEDQEDMNELMK--KHKAAVAQSSQNLAQISDLQAQLEEAMKEKQDVQEKLTALQSQLE 1802 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 + + S + + + + ++ + L+ +L + A Sbjct: 1803 FQEQSMVD-KSLVSRQEAKIRELETKLEFEKTQVKRLESLVARLKENLEKLTEERDQRSA 1861 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-----TAKGEAEKTAILISILH-E 623 + ++ Q L ++ R + + E+ K+ A+ + + E L + Sbjct: 1862 SENREKE---QNKRLLRQIRDIKEEMAELAKKEAEASRKKHELEMDIESLEAANQSLQAD 1918 Query: 624 VHIQIHQIESQEAMIE 639 + + +I +A IE Sbjct: 1919 LKLAFKRIGDLQAAIE 1934 >gi|229019772|ref|ZP_04176575.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273] gi|229025999|ref|ZP_04182383.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272] gi|228735280|gb|EEL85891.1| hypothetical protein bcere0029_42850 [Bacillus cereus AH1272] gi|228741497|gb|EEL91694.1| hypothetical protein bcere0030_42720 [Bacillus cereus AH1273] Length = 786 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKVQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|72388200|ref|XP_844524.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62358775|gb|AAX79229.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801057|gb|AAZ10965.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1692 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 15/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK---------GK 475 + + ++L+ L +E + + R Q+ S + + Sbjct: 632 LRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELRE 691 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ E L +L Q LA++ + E +KL + E + Sbjct: 692 QTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEE- 750 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 RL E+G E+ ++L+ + + E + + R+ Sbjct: 751 --KSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREI 808 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEA 636 ++++++ + KT L+ L + + + ++ + QEA Sbjct: 809 SDLQQRLE--GEIDDHIKTTALLEELRKHYNNLEELFDKQEA 848 Score = 38.3 bits (87), Expect = 3.9, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 10/206 (4%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + A ++ L + K + E L Sbjct: 1204 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1263 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + E + ++ E +KL L E + E L + Sbjct: 1264 ---EELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEEL---ELKAAENEK 1317 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L ++L+ +V + + E + + + L L + EE+E + A+ Sbjct: 1318 LAEELELKVAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKL 1374 Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634 E + + +++ E++ Sbjct: 1375 AEELELKAAENEKLAEELELKAAENE 1400 Score = 38.3 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 10/206 (4%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + + E+ + A ++ L + K + E L Sbjct: 1050 EKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1109 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + E + ++ E +KL L E + E L + Sbjct: 1110 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEEL---ELKAAENEK 1163 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L ++L+ +V + + E + + + L L + EE+E + A+ Sbjct: 1164 LAEELELKVAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKL 1220 Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634 E + + +++ E++ Sbjct: 1221 AEELELKAAENEKLAEELELKAAENE 1246 Score = 37.9 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + A ++ L + K + E L Sbjct: 1106 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1165 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + E + ++ E +KL L E + E + E Sbjct: 1166 ---EELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAE 1222 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L +A E ++ + + L L + EE+ Sbjct: 1223 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1280 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + + +++ E++ Sbjct: 1281 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1316 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 64/216 (29%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + ++ L + K + + E L Sbjct: 1302 EKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLA 1361 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + E + ++ E +KL L E + E + E Sbjct: 1362 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1418 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L A E ++ + + L L + EE+ Sbjct: 1419 ELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1476 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + +++ E++ Sbjct: 1477 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1512 Score = 37.6 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 26/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + ++ L + K + + E L Sbjct: 1274 EKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAENEKLA 1333 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + E + ++ E +KL L E + E + E Sbjct: 1334 ---EELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1390 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L +A E ++ + + L L + EE+ Sbjct: 1391 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1448 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + + +++ E++ Sbjct: 1449 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1484 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 26/271 (9%), Positives = 75/271 (27%), Gaps = 15/271 (5%) Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 ++ L +++++L Sbjct: 920 RQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMHEELEREERDRSGVTLQNERLAEEI 979 Query: 425 SQAIRDRLQQLFQKYITEHS-GYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + Q + + + + + ++ + ++ K ++ L Sbjct: 980 QRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELELKAAENEKLAEELELKAAENEKLA 1039 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E L + E + ++ E +KL L E + E L Sbjct: 1040 EELELK--------VAENEKLAEELELKVAENEKLAEELELKAAENEKLAEEL---ELKA 1088 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 +L ++L+ + + + E + + + L L + + EE+E + A Sbjct: 1089 AENEKLAEELELKAAENEKLAEELELKAAE-NEKLAEELEL--KAAENEKLAEELELKAA 1145 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + E + + +++ E++ Sbjct: 1146 ENEKLAEELELKAAENEKLAEELELKVAENE 1176 Score = 37.2 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + A ++ L + K + E L Sbjct: 1134 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLA 1193 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + E + ++ E +KL L E + E + E Sbjct: 1194 ---EELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAE 1250 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L A E ++ + + L L + EE+ Sbjct: 1251 ELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1308 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + + +++ E++ Sbjct: 1309 ELKAAENEKLAEELELKVAENEKLAEELELKAAENE 1344 >gi|114332335|ref|YP_748557.1| replicative DNA helicase [Nitrosomonas eutropha C91] gi|114309349|gb|ABI60592.1| primary replicative DNA helicase [Nitrosomonas eutropha C91] Length = 465 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 40/130 (30%), Gaps = 10/130 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E ++L L+ + + + + + Q ++ + + K Sbjct: 19 KLPPHSIEAEQSVLGGLMLDNQAWDKVADIIIESDFYRQDHQLIYQHICRLIEQSKPADV 78 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L QL A + + + Y + + R R + R+ Sbjct: 79 ITVAESLENA------AQLQHAGGLAYIGAIAQNTPSAANIRRYAEIV----RERSIMRK 128 Query: 595 KEEIEKQIAQ 604 ++ QI Sbjct: 129 LAQVSTQITD 138 >gi|149472055|ref|XP_001516432.1| PREDICTED: hypothetical protein, partial [Ornithorhynchus anatinus] Length = 873 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 44/283 (15%), Positives = 96/283 (33%), Gaps = 38/283 (13%) Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 R A +L KR + + A+LE L ++D+ LR Sbjct: 80 QARLKDLEALLNSKEAALSTALSE-KRTLDGELHELRGQVAKLEAALGEAKKQLQDEMLR 138 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +RLQ L ++ + + Y ++ R + + + + KL+ Sbjct: 139 RV---DAENRLQTLKEELDFQKNIYSEELRETKRRHETRLVEIDSGKQREFENKLADALQ 195 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLPEEIH 538 + + ++ + +L+K +S + E+ L H Sbjct: 196 --------------DLRAQHEDQVDQYK---KDLEKTYSAKLDNARQSAERNSNLAGAAH 238 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L + + L Q+ A EA + D+ + +R E Sbjct: 239 EELQQTRIR--IDSLSAQLSQLQKQLAAREAKLRDLEDALARERDTSRRL------LSEK 290 Query: 599 EKQIAQVTAKGEA--EKTAILISILHEVHIQIHQ----IESQE 635 E+++A++ A+ + ++ L+ I + ++IH +E +E Sbjct: 291 EREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLEGEE 333 >gi|147678457|ref|YP_001212672.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum thermopropionicum SI] gi|146274554|dbj|BAF60303.1| ATPase with chaperone activity, ATP-binding subunit [Pelotomaculum thermopropionicum SI] Length = 871 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 76/212 (35%), Gaps = 16/212 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R ++ + +++ K ++ +++AAL+ + Sbjct: 319 YRKHIEKDAALERRFQPVYVGEPGVEDTIAILRGLKEKYEVHHGVRIKDAALVAAAMLSH 378 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E + ++ Sbjct: 379 RYISDRFLPDKAIDLVDEAASRLRIEIDSMPTEIDEIDRRIRQLEIEKQALA------KE 432 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q + + E + ++ + +++ + L + EI+++I + +A + Sbjct: 433 QDKGSQERLQKIEGELAALKSRLEDLKEHWRKEKELIQSIREIKERIEETRLAEQAAERE 492 Query: 616 ILI---SILH-----EVHIQIHQIESQEAMIE 639 + + L E++ ++ ++ E + E Sbjct: 493 ADLGKVAELRYGVMPELNRRLQ--QNNEKLAE 522 >gi|124487429|ref|NP_001074580.1| TATA element modulatory factor [Mus musculus] Length = 1091 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 95/275 (34%), Gaps = 16/275 (5%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + KT E+L +E + + +E +L + N IK + Sbjct: 520 DAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRA 579 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++ + +L + ++ E + G + Q KL+ Sbjct: 580 KDKDNENVIAKLNRKAKELEEELQHL---------RQVLDGKEEVEKQHRENIKKLNSVV 630 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 +E L ++ + ++ A + ++ ++L ++ + + + Sbjct: 631 ERQEKDLGRLQVDMDELEEKSRSTQAAL---DSAYRELTDLHKANAAKDSEVQEAALRRE 687 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599 + + EL L++ +A + D+R Q+A A ++ L + E++ Sbjct: 688 MKAK--EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 745 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + + E + + S + QI +++ Sbjct: 746 QRLQEAENR-NQELSQSVSSTARPLLRQIENLQAT 779 >gi|163845788|ref|YP_001633832.1| hypothetical protein Caur_0190 [Chloroflexus aurantiacus J-10-fl] gi|222523496|ref|YP_002567966.1| hypothetical protein Chy400_0202 [Chloroflexus sp. Y-400-fl] gi|163667077|gb|ABY33443.1| conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] gi|222447375|gb|ACM51641.1| conserved hypothetical protein [Chloroflexus sp. Y-400-fl] Length = 303 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 13/211 (6%) Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 ++E + + P+QR S + E A+ +I + + Sbjct: 31 GAMMSEQTSFVAMPTPAPMLSGAPVPAQRDTASFAGGVSSGESAIGSEVAVQRLIIKNAS 90 Query: 497 ILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I E LA + + + L F+ + + I R+ F +L+ + Sbjct: 91 IALEVADVLAAEQALRQKAEALGGFVASVETYGSGEDL-RATIVLRVPVEHFEAVLRDAE 149 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + S + DV + Y A + + + ++ +++ +A Sbjct: 150 GLASNVLRRSV----SGSDVTEEYVDLEARLRNLEATNARLLDL---LSRAQNVNDALMV 202 Query: 615 AILISILHEVHIQIHQIESQEAMIEGFGKMS 645 L E+ QI +I+ + +E MS Sbjct: 203 N---QALTEIQEQIERIKGRMQYLEQSAAMS 230 >gi|297481405|ref|XP_002692090.1| PREDICTED: kinesin family member 16B [Bos taurus] gi|296481545|gb|DAA23660.1| kinesin family member 16B [Bos taurus] Length = 1339 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 61/198 (30%), Gaps = 24/198 (12%) Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 ++ N K +R S L ++ +P + E+ Q + Sbjct: 593 FRFNHPKEAAKLREKRKSGLLSSLSLSMSDLSKSRENLSAVMLYNPGLEFERQQREELEK 652 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEI---------------HQRLCERGFGELLKQLD 554 ++ L + E++ + + R E LK+ Sbjct: 653 LESKR------KLIEEMEEKQKSDKAALERMQQEVETQRQETEMAQRQIRKQEESLKRRS 706 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR--QKEEIEKQIAQVTAKGEAE 612 + + + RQ QQ L K+ + R + +E +++ ++ + +AE Sbjct: 707 SHLESTLKDLLAEKERFEEARQREQQETELQKKKQEEERFLRVQEELQRLQELNSHEKAE 766 Query: 613 KTAILISILHEVHIQIHQ 630 K + L + + + Sbjct: 767 KVQ-IFQELERLKREKEE 783 >gi|237756597|ref|ZP_04585115.1| chaperone protein ClpB [Sulfurihydrogenibium yellowstonense SS-5] gi|237691243|gb|EEP60333.1| chaperone protein ClpB [Sulfurihydrogenibium yellowstonense SS-5] Length = 994 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 8/137 (5%) Query: 505 LADIRYDNNELQKL-----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 + ++ + + L L + + E + L E+ L + Sbjct: 518 IPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIKMLDEQIIQASLDGDYEKEAK 577 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS 619 + A E + D++ ++ + L RQ EEIEKQI + KG+ EK A Sbjct: 578 LKIEKANLEKQLKDLKA---KSSNERTKLEELQRQLEEIEKQIEFYSQKGDYEKEAEYKI 634 Query: 620 ILHEVHIQIHQIESQEA 636 ++ +I ++ + A Sbjct: 635 KKAQIEKEIKALQQKLA 651 Score = 39.5 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 18/217 (8%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y +R++ L + + + + + KG L + + Sbjct: 389 YRGEFEERMKSLIDELKKDPNIILFIDELHTIVGAGKGEGASDAGQLLKPALARGEIRVI 448 Query: 484 EAALL----LTLINHPAI---LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 A L + PA+ Q Y E DI L+ L L Sbjct: 449 GATTLDEYRKYIEKDPALERRFQPVYVEEPDIDTTIEILKALRPKLEKHHN--------- 499 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 ++ ++ K R + +A + + + L R+ + Sbjct: 500 --VKISDKAIEAAAKLTGRYIPARKFPDKAIDALDQACARKKLKLVYASPEVIELERKIK 557 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 +++QI Q + G+ EK A L + Q+ +++ Sbjct: 558 MLDEQIIQASLDGDYEKEAKLKIEKANLEKQLKDLKA 594 >gi|197294195|ref|YP_001798736.1| Replicative DNA helicase [Candidatus Phytoplasma australiense] gi|171853522|emb|CAM11372.1| Replicative DNA helicase [Candidatus Phytoplasma australiense] Length = 427 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL TL+ +P + + + N + + ++ + ++ + + L Sbjct: 4 AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKRLKLQNREIDYVTVGSVLD 63 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + +D + + A + + Y + R L +++ ++ Sbjct: 64 NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKKLPTEL 115 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 + K+ + + L V Q +EGF Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136 >gi|146086892|ref|XP_001465676.1| hypothetical protein [Leishmania infantum JPCM5] gi|134069775|emb|CAM68102.1| hypothetical protein, unknown function [Leishmania infantum JPCM5] Length = 2064 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 32/286 (11%), Positives = 88/286 (30%), Gaps = 19/286 (6%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + + R+ E + ++ E E ++ D Sbjct: 1455 DAELADLREQLREAEERARDVEAQQCDRDAELA--DLREQLREAEERTRDVEAQQCD--- 1509 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R +R++L++ ++ + + A R+Q ++ + + Sbjct: 1510 RDAEVADLREQLREAEERARDVEAQQCDRDAEVADLREQLREAEERARDVEAQQCDRDAE 1569 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L +E+ +++ + D + E+ L L + ++ + Sbjct: 1570 VADLREQLRE-------AEERARDVEAQQCDRDAEVADLREQLREAEERARDVEAQQCDR 1622 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV----RQGYQQALALYKRFRLLSRQK 595 ELL R+ +G E + D R+ +Q R L + Sbjct: 1623 DAELERVKELLSSSMREAECSGEIRGALEDQLEDAAREIRELREQLAVAQVRREALDAEL 1682 Query: 596 EEIEKQIAQVTAKGEAEKTAILIS--ILHEVHIQIHQIESQEAMIE 639 ++ +Q+ + + + + ++ Q+ + E + +E Sbjct: 1683 ADLREQLREAEERARDVEAQQCDRDAEVADLREQLREAEERTRDVE 1728 Score = 42.6 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 44/134 (32%), Gaps = 6/134 (4%) Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 + E+ L L + ++ + ELL R+ +G E + Sbjct: 1119 DAEVADLREQLREAEERTRDVEAQQYDRDAELERVKELLSSSMREAECSGEIRGALEDQL 1178 Query: 572 VDV----RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS--ILHEVH 625 D R+ +Q R L + ++ +Q+ + + + + ++ Sbjct: 1179 EDAAREIRELREQLAVAQVRREALDAELADLREQLREAEERARDVEAQQCDRDAEVADLR 1238 Query: 626 IQIHQIESQEAMIE 639 Q+ + E + +E Sbjct: 1239 EQLREAEERARDVE 1252 >gi|117925550|ref|YP_866167.1| hypothetical protein Mmc1_2260 [Magnetococcus sp. MC-1] gi|117609306|gb|ABK44761.1| hypothetical protein Mmc1_2260 [Magnetococcus sp. MC-1] Length = 814 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 39/265 (14%), Positives = 79/265 (29%), Gaps = 14/265 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK-DQKLRYYYSQAIRDRLQQL 435 + E E E ++ DQ L+ Q I DR+ +L Sbjct: 138 HARDEHPSKHANEAERVKKAHETESRLRRQEQALVNKQLRFDQDLQR--LQQITDRVIKL 195 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT---LI 492 Q + +L + REA+L+ T L Sbjct: 196 EQNLQVALKEATDKALSAEHSQSHDVALTARQMKALAERAQE--IRNREASLMATEVRLA 253 Query: 493 NHPAILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + L E+ +L LQ + + +K EI ++ + Sbjct: 254 HQIDYLAEKEAKLTQYELHQINLQTQFAERFAALRTREKATERLEIRIHAEQQIRENAFQ 313 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI--AQVTAKG 609 + A L A + +++ A ++ + ++ ++Q+ + K Sbjct: 314 ---KHKETADLLDAQLNKRVEELKTRALDAQNSEQKLATHQQLLDKQQEQVETRSLEQKR 370 Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634 +AE A + L E ++ ++ Q Sbjct: 371 DAEHLAAYENRLREKEESLNSLKHQ 395 >gi|323343441|ref|ZP_08083668.1| DNA primase [Prevotella oralis ATCC 33269] gi|323095260|gb|EFZ37834.1| DNA primase [Prevotella oralis ATCC 33269] Length = 303 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 13/42 (30%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 + P EK SF N +Y F G+ + Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNII 65 >gi|315607214|ref|ZP_07882218.1| DNA primase [Prevotella buccae ATCC 33574] gi|315251268|gb|EFU31253.1| DNA primase [Prevotella buccae ATCC 33574] Length = 303 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 13/42 (30%) Query: 33 NAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHL 74 + P EK SF N +Y F G+ + Sbjct: 24 KQYGVNLMYLSPLRTEKHASFKVNTEINQWYDFGIGRGGNII 65 >gi|239907337|ref|YP_002954078.1| replicative DNA helicase [Desulfovibrio magneticus RS-1] gi|239797203|dbj|BAH76192.1| replicative DNA helicase [Desulfovibrio magneticus RS-1] Length = 484 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 46/170 (27%), Gaps = 16/170 (9%) Query: 448 RYWKKNARHRDQKGPSQRLMQ-----SSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 R +NAR Q SS V K+ + E ++L ++ A L Sbjct: 5 RKKPRNARAAGSGSGEPLTGQALERVSSDVLRKVPPQNLEAEQSVLGGILLKNATLFNLV 64 Query: 503 QELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLKQ 552 + + + + + ++ + + + L G EL Sbjct: 65 DVIGEDDFYSPAHRFIYQAILDLARRNAPVDLVSLAEALRASGKLDEVGGPAYLAELASA 124 Query: 553 LDRQVRDAGLWSATTEANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 A E ++ + ++ + Q + +Q Sbjct: 125 TVSAANAAHHAEIVREKSVQRRLISTAVDIISSCYEGAQTTEQLLDASEQ 174 >gi|242800288|ref|XP_002483556.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] gi|218716901|gb|EED16322.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500] Length = 776 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 36/289 (12%), Positives = 83/289 (28%), Gaps = 17/289 (5%) Query: 348 VNFVLLSRGEDPDSFIRCYGKTAF----EKLIVESLPLVDMLWKRETENRSFNTPDERAE 403 + DP + L+ S R +++ F +P+ + Sbjct: 178 YRPASDNNSYDPSDSDEAIPLDDYTMGDSMLMSSSPAFRRHHDGRSSDSDHFPSPEPFSP 237 Query: 404 LE-IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 + N I D + + + L +K + R + + Sbjct: 238 ITPTAGSNTEYLIVDDHPSEELAS-VAEELAAA-RKEKQDLFIEWRKLHSQSSAQPGADD 295 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + +E+ L L+ +EL + + + + S + Sbjct: 296 TDPPADFMKQIVPQLEAAIRKESDL-------RQTLKTAQEELTSMGFSGPNMHAILSEI 348 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 S F + E I G + L V Sbjct: 349 RSAFATAR-LELENIVPGETAAGLFDCKATLKALVDRLRQIGGALLTERRRADSAADSHR 407 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVT--AKGEAEKTAILISILHEVHIQIH 629 L ++F+ +++++++K++ + + AE T L + L E+ +I Sbjct: 408 LLTEKFQEALKERDDVQKKLKRSEESPERNAEDTLHLRTRLQELEEEIR 456 >gi|74025566|ref|XP_829349.1| hypothetical protein [Trypanosoma brucei TREU927] gi|70834735|gb|EAN80237.1| hypothetical protein, conserved [Trypanosoma brucei] Length = 1299 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 24/267 (8%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 +E + + ++ LE LK + D + + +R +L + + Sbjct: 754 KELRKQPSDVTGSKSSLEKELKELRKQLSDVADSKSSLEKELRKQLSDVAGSKSSLEKEP 813 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINH---------PAI 497 K+ + K ++ ++ L SK +E L ++ + Sbjct: 814 DELKKQLSDVAGSKSSLEKELRKQLSDVAGSKSSLEKELKELRKQLSDVAGSKSSLEKEL 873 Query: 498 LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE-----RGFGELLKQ 552 ++ EL++L L + E + ++L + + LK+ Sbjct: 874 RKQLSDVAGSKSSLEKELKELRKQLSDVADSKSSLEKE-LRKQLSDVAGSKSSLEKELKE 932 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 L +Q+ D ++ E + ++R+ L ++ +E+ KQ++ V A+ Sbjct: 933 LRKQLSDVADSKSSLEKELKELRKQLSDVAGS---KSSLEKELKELRKQLSDV-----AD 984 Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639 + L L E+ Q+ + ++ +E Sbjct: 985 SKSSLEKELKELRKQLSDVAGSKSSLE 1011 >gi|332028616|gb|EGI68651.1| Serine/threonine-protein kinase MRCK beta [Acromyrmex echinatior] Length = 1850 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 42/344 (12%), Positives = 106/344 (30%), Gaps = 35/344 (10%) Query: 317 IVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF-IRCYGKTAFEKLI 375 I D + LV N + S G PDS + L Sbjct: 460 ISALSQTDKRIQILEEENTRLVQTIDDMKNHSSISHSSPGISPDSNNATRKLQDEINTLT 519 Query: 376 VESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQL 435 + L L + + L+ + ++ +K +AI+D+L Sbjct: 520 KRNCELESQLKSMDIPRELRTLDNGDMMKYRELEKLVRCLRSEKE-----EAIKDKLDAQ 574 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL---- 491 + + + ++ + S +L + K KLS++ +E L + + Sbjct: 575 EKLKLQDKELKDALTQRKLAMTEYTEVSDKLSELRQQKQKLSRQVRDKEEELEVAMQKVD 634 Query: 492 -INHP-----AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 + H + +E + + + ++ +KL + + + + + L Sbjct: 635 TLRHDIRKAEKLRRELENRIDEAMAETSKERKLRERSEEYCKQMQEEMEKIRQRSLGNDA 694 Query: 546 FG------ELLKQLDRQVRDAGLWSATTEANIV-----DVRQGYQQALALYKRFRLLSRQ 594 + + +L +V + ++R +Q R LL R+ Sbjct: 695 SANHALATQEINRLKAEVEKLEVQYNENLTQQQSRFNLEIRSLQEQLHEAETRRELLERE 754 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + ++++ + + + ++++ +E +I Sbjct: 755 VQLTKEKLDAARLENITDSEETI--------NELNRRHERERII 790 >gi|313233858|emb|CBY10027.1| unnamed protein product [Oikopleura dioica] Length = 7320 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 27/326 (8%), Positives = 93/326 (28%), Gaps = 48/326 (14%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P++ E ++ + + + D + ++++ Sbjct: 6578 PEALTDDIDGEVAEVNKAATVSAEEAKIAQLENEFNEKISDINKSSCRDADDLDEQLRNR 6637 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 L + ++ R+ ++ + + + ++ + + +S Sbjct: 6638 NLADDMIKDLKIRMAKVEKNRQRQIKAAIALRTAKLQAAKRRKATAEASEVMQSMANISD 6697 Query: 479 KPSLREAALLLTLINH------------PAILQEQYQELADIRYDNN-ELQKLWSFLFSD 525 + E + ++ + QE+ D+ + E++ ++ Sbjct: 6698 LGDITEEDIRNQILEEVTNGKDANQAVKDVLQARHRQEILDMSRRHQCEIEAAKKIALNE 6757 Query: 526 FVEQKYFLPEEIHQR------------LCERGFGELLKQL-----------DRQVRDAGL 562 + +Y I ++ + + + +L D + G Sbjct: 6758 ARDARYLDRNAIVEQFDRDVLELSTKDIDDAEYDNEFTRLKAQLTAELKAFDEETERLGD 6817 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKE----------EIEKQIAQVTAKGEAE 612 + + +DV+Q + L ++ + + E+E+ + K +A+ Sbjct: 6818 RIFSEKRKGLDVKQSAEHLGLLERQLSQIDEEIRKCTSDAQIQYELEQNRLKAQQKHQAD 6877 Query: 613 KTAILISILHEVHIQIHQIESQEAMI 638 E ++ + QE ++ Sbjct: 6878 MDEAARQKAIEEERRLR--KQQEDLL 6901 >gi|225464348|ref|XP_002272127.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 2856 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG------ELLKQLDRQVRD 559 + N+ + + + D + ++ L E+ EL+ Q+ + Sbjct: 2395 ERLLLAVNDFASMQTEILDDSQKDMKARIADLQTELQEKDIQKERICMELVSQIRQAEAT 2454 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-- 617 A +S ++ V +Q + K L ++ ++++ + +K EK L Sbjct: 2455 ALGYSTDLQSANTQVHDLEKQVEVMEKERNALEQRIKDLQD--GEAASKELQEKVKSLAD 2512 Query: 618 --ISILHEVHIQIHQIESQEAMIE 639 + E+ + ++ +EA +E Sbjct: 2513 VVAAKEQEIEALMQALDEEEAQME 2536 >gi|254448917|ref|ZP_05062372.1| methyl-accepting chemotaxis protein [gamma proteobacterium HTCC5015] gi|198261454|gb|EDY85744.1| methyl-accepting chemotaxis protein [gamma proteobacterium HTCC5015] Length = 691 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 21/228 (9%), Positives = 67/228 (29%), Gaps = 23/228 (10%) Query: 421 RYYYSQAI------RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + Y + ++ L + + + R ++ + + Sbjct: 55 QELYIAFLELRQQQKEYLNAGSADIPDSYKKRSQQLVQRLRQLSTPEVTEDSASDRVTEA 114 Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 L E + ++ L ++ + L + + Sbjct: 115 SEVAAAQLAEF----------ETARSIFESLGQNNFEGVRGKAL-QAILEAQSQVDSASK 163 Query: 535 --EEIHQRLCERGFGELL-KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR--FR 589 + +L L+ ++ + T + + D+ +A+ + Sbjct: 164 RLSGVSTQLQRSVLNPLMYSDSEQYAERSREAFETFQKALNDLEADVAEAVVSSLQGPIE 223 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 LL ++ ++++ Q+ A + + L + E+ Q++Q + A+ Sbjct: 224 LLQQKSTQLQQSQRQLEAT-SQQLSDWLSRLRAELKEQLNQERAHLAL 270 >gi|296083792|emb|CBI24009.3| unnamed protein product [Vitis vinifera] Length = 1176 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 12/144 (8%) Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG------ELLKQLDRQVRD 559 + N+ + + + D + ++ L E+ EL+ Q+ + Sbjct: 715 ERLLLAVNDFASMQTEILDDSQKDMKARIADLQTELQEKDIQKERICMELVSQIRQAEAT 774 Query: 560 AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL-- 617 A +S ++ V +Q + K L ++ ++++ + +K EK L Sbjct: 775 ALGYSTDLQSANTQVHDLEKQVEVMEKERNALEQRIKDLQD--GEAASKELQEKVKSLAD 832 Query: 618 --ISILHEVHIQIHQIESQEAMIE 639 + E+ + ++ +EA +E Sbjct: 833 VVAAKEQEIEALMQALDEEEAQME 856 >gi|254585629|ref|XP_002498382.1| ZYRO0G08910p [Zygosaccharomyces rouxii] gi|238941276|emb|CAR29449.1| ZYRO0G08910p [Zygosaccharomyces rouxii] Length = 1121 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 31/346 (8%), Positives = 91/346 (26%), Gaps = 27/346 (7%) Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 DG++ + ++ L + + A +++ P Sbjct: 172 NDGNNRNKSKKHTPPEVYPQMLALPISRRPLFPGFYK-AVVISDDRVMKAIREMLDRQQP 230 Query: 381 LVDMLWKRETENRSFNTPDERAEL-EIHLKNCINHIKDQKLR---YYYSQAIRDRLQQLF 436 + + +E+ S + + + + + + Sbjct: 231 YIGAFMLKNSESDSDVIHSTDEVYDVGVFAQITSAFPSKDEKTGTETMTALLYPHRRIKI 290 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT------ 490 + + + + + + K + A+ Sbjct: 291 DSLLAPKGDAKGTPAEAPQESKDETAEVTTETQDVNESKTVAETDSNAQAVTTLEEEDLN 350 Query: 491 ---LINHPAILQEQYQELADIRYD--NNELQKLWSFLFSDFVEQKYFL------PEEIHQ 539 + + + L D ++ + + L S + F E Sbjct: 351 PTEFLKNYDVSLVNVSNLEDDPFERKSPVVNALTSEILKVFKEISQLNSMFREQIATFSA 410 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK--EE 597 + + ++ R A SA E + ++ + L K +L ++ E Sbjct: 411 SIQSAT-TNIFEEPARLADFAAAVSAGEEDELQEILESLNIEQRLEKSLLVLKKELMNAE 469 Query: 598 IEKQIAQVTAKGEAEKTAI--LISILHEVHIQIHQIESQEAMIEGF 641 ++ +I++ ++ L+ L + ++ + + MIE F Sbjct: 470 LQNKISKDVETKIQKRQREYYLMEQLKGIKRELGIDDGRAKMIETF 515 >gi|238909825|ref|ZP_04653662.1| Putative prophage primase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 918 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 46/345 (13%), Positives = 90/345 (26%), Gaps = 57/345 (16%) Query: 41 ACCPFHDEKTPSFHCNDS-KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVP 99 A CP T F +D+ +G + C C GD L + + C E+ + A + G+ Sbjct: 37 APCPACGG-TDRFRFDDNGRGSFICNQCGA-GDGLDLIKKVNNCDTTEAAKMAAEVLGID 94 Query: 100 LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 + + + L +R + + Sbjct: 95 YRAAETDPAAASQRREQL--------------------------EADRQQREQERQKQAV 128 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 G A R + + + L G L+ + G V+A Sbjct: 129 GDAEQRRTTFTRLYAGMRQNVTQGESDYLQSKGLTGFNYPVMPDGSLLLELVDESGAVVA 188 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 +G S + + Y +++ EG Sbjct: 189 AQ-TITPQGGKRLLTGSAKRGAY------YGVN--------------ALERPQSVVIAEG 227 Query: 280 YMDVLSLCQAGVQNVVSSLGTA---LTEYQLRLLWKLSPRIVLCFDGDDP-GLRAAYKAI 335 L+ + + A L ++ +I++ D D G K Sbjct: 228 LATALTCHLIRTDALTVAAIDAGNLLPVAEVMRRKYPQAQIIIAADNDHHEGQANTGKDA 287 Query: 336 DLVLCHLIPGNRVNFVLLSRGE-DPDSFIRCYGKTAFEKLIVESL 379 + G + + + D D + + G A +S+ Sbjct: 288 AEKAALSVAG--WISLPPTDHKADWDDYRQQNGLKAATAAFNDSM 330 >gi|228910376|ref|ZP_04074191.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL 200] gi|228849142|gb|EEM93981.1| hypothetical protein bthur0013_45230 [Bacillus thuringiensis IBL 200] Length = 786 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|228967649|ref|ZP_04128670.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis serovar sotto str. T04001] gi|228792025|gb|EEM39606.1| hypothetical protein bthur0004_44420 [Bacillus thuringiensis serovar sotto str. T04001] Length = 786 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|293332375|ref|NP_001168289.1| hypothetical protein LOC100382053 [Zea mays] gi|223947243|gb|ACN27705.1| unknown [Zea mays] Length = 826 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 102/357 (28%), Gaps = 23/357 (6%) Query: 298 LGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGE 357 + WK + R VL L +V Sbjct: 52 CAVGIGTGSGSQEWKDNLRWVLAALAPRRSSSRCLVLAHLRRPTSRINIMGAWV------ 105 Query: 358 DPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD 417 P S + A+ +L E + V +++ N + + + + D Sbjct: 106 -PVSQLAEEEVAAYRQLEEERIGKVLDDLVELCQSQKVNASKIVIASDDIGRGLVQLVDD 164 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR-----DQKGPSQRLMQSSLV 472 + A DR + WK N + R Sbjct: 165 HGVTELVMGAASDRAYSRKMRTPRSKKALTVQWKANPSCKIWFLCRGNLICTREASEGQA 224 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + + + + PA ++ A + +L + D E Sbjct: 225 HSRAESSTASTSSRSSTSGYSTPAARDRSIEDQAVGTL-DGAAVQLLQEIEEDRPETPTS 283 Query: 533 LPEEIHQRLCERGFGEL--LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 E+ L ++ L + L + + E + + + +A +R Sbjct: 284 DAGEMDDALYDKLKRALMEAESLKHEAYEETRRRQMAERELAEASRMADEAERSNQRE-- 341 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 +R ++E+E+ +A+ A E ++ L ++ +I +++ + A +E S R Sbjct: 342 -ARHRKEVEEMVARERAAIEQDR-----RELDDILEKIRKVDDRSAELELQITSSER 392 >gi|238055365|sp|B9EKI3|TMF1_MOUSE RecName: Full=TATA element modulatory factor; Short=TMF; AltName: Full=Androgen receptor coactivator 160 kDa protein; AltName: Full=Androgen receptor-associated protein of 160 kDa gi|223462447|gb|AAI50932.1| TATA element modulatory factor 1 [Mus musculus] Length = 1091 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 35/275 (12%), Positives = 95/275 (34%), Gaps = 16/275 (5%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + KT E+L +E + + +E +L + N IK + Sbjct: 520 DAAKKEMKTIKEELATRLNSSQTADLLKEKDEQIQGLMEEGEKLSKQQLHNSNIIKKLRA 579 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++ + +L + ++ E + G + Q KL+ Sbjct: 580 KDKDNENVIAKLNRKAKELEEELQHL---------RQVLDGKEEVEKQHRENIKKLNSVV 630 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 +E L ++ + ++ A + ++ ++L ++ + + + Sbjct: 631 ERQEKDLGRLQVDMDELEEKSRSTQAAL---DSAYRELTDLHKANAAKDSEVQEAALRRE 687 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599 + + EL L++ +A + D+R Q+A A ++ L + E++ Sbjct: 688 MKAK--EELSGALEKAQEEARQQQEALVLQVGDLRLALQRAEQAAARKEDYLRHEISELQ 745 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + + E + + S + QI +++ Sbjct: 746 QRLQEAENR-NQELSQSVSSTARPLLRQIENLQAT 779 >gi|120436611|ref|YP_862297.1| chaperone ClpB [Gramella forsetii KT0803] gi|117578761|emb|CAL67230.1| chaperone ClpB [Gramella forsetii KT0803] Length = 868 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 68/202 (33%), Gaps = 3/202 (1%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 +QKY + R ++K + +++ K + K +++ A++ + Sbjct: 317 YQKYFEKDKALERRFQKVIVEEPDTESAISILRGIKEKYETHHKVRIKDEAIIAAVELSQ 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + ++ I + KL + S E + + + + Sbjct: 377 RYITNRFLPDKAIDLMDEAASKLRMEINSKPEELDVLDRKIMQLEIEIEAIKREKDEAKL 436 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + + L + E N D+ + + + EE + + + +G+ K A Sbjct: 437 KSLRSDLANLKEERN--DLHARWMSEKDVVDNIQTAKSDIEEFKLEAERAEREGDYGKVA 494 Query: 616 IL-ISILHEVHIQIHQIESQEA 636 + + E ++ +++ Q A Sbjct: 495 EIRYGKIKEAQEKLEKLQQQVA 516 >gi|157111097|ref|XP_001651388.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] gi|108878534|gb|EAT42759.1| myosin heavy chain, nonmuscle or smooth muscle [Aedes aegypti] Length = 1945 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 30/260 (11%), Positives = 83/260 (31%), Gaps = 15/260 (5%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1575 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1634 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1635 NKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISER-------RANALQNEL 1687 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE----EIHQRLCERGFGELLKQLDRQV 557 + + + ++ L + + +R E L LD + Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747 Query: 558 RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A + +VD + + A + + ++ +E+QI ++ + + +T L Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDDAETNAL 1807 Query: 618 ---ISILHEVHIQIHQIESQ 634 + ++ ++ ++ES+ Sbjct: 1808 KGGKKAIQKLEQRVRELESE 1827 Score = 42.6 bits (98), Expect = 0.20, Method: Composition-based stats. Identities = 40/329 (12%), Positives = 95/329 (28%), Gaps = 23/329 (6%) Query: 329 RAAYKAIDLVLCHLIPGNRVNFVLLSRGED-PDSFIRCYGKTAFEKLIVESLPLVDMLWK 387 + ID + R D + + K E L ++ D+ Sbjct: 1568 SQVRQEIDRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINEL 1627 Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA-------IRDRLQQLFQKYI 440 + + E + + + ++ ++ I +R Q + Sbjct: 1628 EIALDHANKANAEAQKNIKRYQQQLKDVQSALEEEQRARDDAREQLGISERRANALQNEL 1687 Query: 441 TEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 E + R +Q+ ++L + S ++ E+ L + +L Sbjct: 1688 EESRTLLEQADRGRRQAEQELSDAHEQLNEVSAQNASIAAAKRKLESELQTLHSDLDELL 1747 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 E + + +L L + E++ + L ++ EL +LD Sbjct: 1748 NEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ-IKELQVRLDDAET 1804 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKR--------FRLLSRQKEEI--EKQIAQVTAK 608 +A + + + L +R R R+ +E+ + + + + Sbjct: 1805 NALKGGKKAIQKLEQRVRELESELDSEQRRHTDAQKNLRKSERRIKELTFQSEEDRKNHE 1864 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEAM 637 + L + QI + E A+ Sbjct: 1865 RMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1893 >gi|108885083|ref|NP_072756.2| replicative DNA helicase [Mycoplasma genitalium G37] gi|2506499|sp|P47340|DNAB_MYCGE RecName: Full=Replicative DNA helicase gi|84626146|gb|AAC71312.2| replicative DNA helicase [Mycoplasma genitalium G37] gi|166078801|gb|ABY79419.1| replicative DNA helicase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 468 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 11/158 (6%), Positives = 47/158 (29%), Gaps = 3/158 (1%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 Q + K E L+ + + + + +L I + + ++ ++ Sbjct: 3 QQTSFKYANDSNIERAERRLMQAVAQNSEGIDLIFNKLEPIDFFATPFKLIFQTAKENYQ 62 Query: 528 EQKYFLPEEIHQRLC---ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + + + + + +L+ L + + ++ Sbjct: 63 LNNPIIGSGLLEAVKFKLDANDQSTKSELEILFTKILLIRLPPNQTEIKTLVDVVKKASI 122 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH 622 ++R + +++ E ++ + +G + + Sbjct: 123 FRRLQQFAKRVYNEEFKLKEDRFEGYLQAIQDDFVKII 160 >gi|326674224|ref|XP_003200097.1| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2 [Danio rerio] Length = 875 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 36/305 (11%), Positives = 91/305 (29%), Gaps = 42/305 (13%) Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 + + + + K + + K N R + Sbjct: 457 HEQDSEVREQMSGYKRMRRQHQKHLLALENKLKGEMDEHRLKLDKELENQ------RNSF 510 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + +++ + + KK +H + Q+ S + +K L+ Sbjct: 511 AAEMDKLIKKHQGTMEKDAKTFANDEKKFLQHIQSQQKKELNSFLESQKREYKLRKEQLK 570 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E+ L + + + L + L + + +RL E Sbjct: 571 ESKELQIKKQFQDACK----------IQTRQYKALRNHLLE---STPKPEHKTMLKRLKE 617 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL------------ 591 +L ++ +T + + ++ Q L + + L Sbjct: 618 EQTRKLAILAEQYDHTINNMLSTQALRLDEAQEAECQVLRMQLQQELELLNAYQSKIKMQ 677 Query: 592 -----SRQKEEIEKQ--IAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 R+++E+E++ + + + + E+ L + E + + +++E IE F Sbjct: 678 TDAQQERERKELEQRVSLRRALLETKIEEEMLTLQNERTERIRSLLERQARE--IEAFDS 735 Query: 644 MSGRL 648 S RL Sbjct: 736 ESMRL 740 >gi|302675835|ref|XP_003027601.1| hypothetical protein SCHCODRAFT_79306 [Schizophyllum commune H4-8] gi|300101288|gb|EFI92698.1| hypothetical protein SCHCODRAFT_79306 [Schizophyllum commune H4-8] Length = 1331 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 74/586 (12%), Positives = 160/586 (27%), Gaps = 60/586 (10%) Query: 87 ESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFF-------------HHSLK 133 ++V+ LA V + E + +L I H L Sbjct: 205 DAVRALANET-----EVSTEAEACFQRAKELYEKITDCAGSLERPGTDSDGILQEHKQLD 259 Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGD 193 A + D + + + ++ QK + + A Sbjct: 260 FAMRHEVETIADLKNKSTAHCIDALRRIGAVNNDLVKTP--QKLSELQTSLRAKNSFSHI 317 Query: 194 NSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI---------LFHK 244 S + I + F R S E + L+S E Sbjct: 318 QRLHSMLYAYGATVIEIVRRKEFARFFYQRAQSILEVMAKLSSSERKRRQAYRSEVHGQL 377 Query: 245 GKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTE 304 +L + + S S VEG VL +++ + Sbjct: 378 PFSLKGMDDPVPSIDFSPSGSTESVYSLEREDVEGLFAVL----EDLEHYSRNSNDGKAL 433 Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRA-AYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363 ++ ++V DG + G A +++ + + V ++ + Sbjct: 434 EAVQQCRADLDKLVAKMDGLESGFDRIAERSLLSASRLSLSRKQSATVDEHAYQELAEQL 493 Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + ++ + + + R +E E D+ R Sbjct: 494 RLQQEAQAQRDEEHRQERERLQAELQQTKRDLRDAEESYASERERA-------DELERQL 546 Query: 424 YS------QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + I R Q+ ++ E + + +Q +L + Sbjct: 547 FQARAEADSEIAAR--QMLEQRNAELRADAEKHAEELSRALGEATAQSRAAEALKQELAH 604 Query: 478 KKPSLREAALLLTLINHP--AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 + E L + + EQ LA++ + L + + +E Sbjct: 605 ANAAYAEMRALEARTSERLAQVTDEQSTMLANLEASRERGEDLEAQIREARMENG----- 659 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQ 594 +IH+ L + E + L Q + + A R +++ L + +R L R Sbjct: 660 DIHRALEDA-QREKDRLLRSQASEHDRFIKDQRAEADGDRAVWERELHELQNSYRQLDRH 718 Query: 595 KEEIEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 ++++ + ++ A L ++ Q + EA + Sbjct: 719 VKDLQSALDVSRSDATELRATLQRTEKALRLTEHELRQTKISEATL 764 >gi|309361024|emb|CAP30430.2| CBR-IFT-74 protein [Caenorhabditis briggsae AF16] Length = 676 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 49/412 (11%), Positives = 125/412 (30%), Gaps = 39/412 (9%) Query: 250 NFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRL 309 A K ++ G D L + + A + +L Sbjct: 191 GVLRAKQNAIKVEISKMKEKRD------RGIRDRNELHAYETRASSQAQEIAELQGKLLD 244 Query: 310 LWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 L K+ +I L D D L A + N E I + Sbjct: 245 LNKIMEKIQLNGDMSDIELEANKMKEQADEMKALTEEAFNERAAKEEECQRLEIEVEEQK 304 Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL--------- 420 + + ++ + ++ + + A++E + + + + ++ Sbjct: 305 KLNEAVTHAMDPQMKEKYEDLKSEAKLLRERVAKMEARNEELDDKLSNYEIKIRSNPFKK 364 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR------------LMQ 468 R Q D L++ +K + + + + Q Sbjct: 365 RAVTLQDTLDALKKEEEKLMEDMQNALTPEAWKEKIVESMKQLNSDLLVIEKQHKALKDQ 424 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 SL +L + S EA ++ + +L + L + D + KL ++ + Sbjct: 425 ISLASEELHEYDSQGEAQIMAHHTKYLQLLSK-SAMLDETPEDYPQKLKLAQQENEEYAD 483 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI-----VDVRQGYQQALA 583 +I L + G+ + LD + + + ++ ++ LA Sbjct: 484 AIVLNLRKISANLKKVNLGDQITDLDERGLNMNSGNIEELKDMHVRLQEEIISTEDMELA 543 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + + ++ + + +++ + + G+++ L E+ + +E++E Sbjct: 544 INEEIDNMTTETKRVQEALKALEEVGDSD------HQLQELEERKTALENEE 589 >gi|302829945|ref|XP_002946539.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f. nagariensis] gi|300268285|gb|EFJ52466.1| hypothetical protein VOLCADRAFT_79064 [Volvox carteri f. nagariensis] Length = 867 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 30/224 (13%), Positives = 84/224 (37%), Gaps = 21/224 (9%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R +++ + + +++ + ++ + ++AL+ + Sbjct: 284 YRKYIEKDAALERRFQQVYVDQPTVAETVSILRGLRERYEVHHGVRISDSALVEAAVLSD 343 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + KL + S + + + + ++ + Sbjct: 344 RYIADRFLPDKAIDLVDEAAAKLKMEITSKPMALDEIDRKVLQLEMERLSLEKVSDR--- 400 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-------QIAQVTAK 608 A AT +A + ++ Q A ++R + + +++++ +IAQ Sbjct: 401 ---GAAARLATLDAELSRLKSEQQVITAQWQREKADMSRVQDLKEEIERVNIEIAQAERD 457 Query: 609 GEAEKTAIL-ISILHEVHIQIHQIESQEAMI-----EGFGKMSG 646 + + A L L + Q+ ++EA+ G G SG Sbjct: 458 YDLNRAAELKYGTLLNLQNQLKA--AEEALARKVKESGNGAASG 499 >gi|282879530|ref|ZP_06288261.1| replicative DNA helicase [Prevotella timonensis CRIS 5C-B1] gi|281306478|gb|EFA98507.1| replicative DNA helicase [Prevotella timonensis CRIS 5C-B1] Length = 504 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 18/182 (9%), Positives = 61/182 (33%), Gaps = 15/182 (8%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 +++ + + + E +L L+ + + + + + QK++ Sbjct: 4 PKTKKTTPIDTTYAHVQPQATDVERVVLGALMIDKDAFSVVSELIRPETFYDPKHQKIYH 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERG-FGEL-----LKQLDRQVRDAGLWSATTEANIVD- 573 + + +++ + +L G E+ + +L QV + + Sbjct: 64 AIQTLNMDENPVDIMTVIDQLKREGTLDEIGGAPYVLELSSQVASSANIEYHAKIIAQKS 123 Query: 574 -VRQGYQQALALYKRFRLLSRQKEEIEKQ-------IAQVTAKGEAEKTAILISILHEVH 625 RQ A + + ++ E+ ++ ++Q K + + +I+ ++ Sbjct: 124 LARQLISYASMIETKAFDETQDIAELMQEAEGNLFTLSQTNMKKDYTQIDPIIAQATDIL 183 Query: 626 IQ 627 + Sbjct: 184 QK 185 >gi|198456261|ref|XP_001360276.2| GA13959 [Drosophila pseudoobscura pseudoobscura] gi|198135550|gb|EAL24851.2| GA13959 [Drosophila pseudoobscura pseudoobscura] Length = 2014 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 110/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1642 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1701 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + +++ AE+ ++ + + ++ + + + K Sbjct: 1702 AAKEELQAQSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANSSSKGS 1761 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1762 LMVDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1818 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1819 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1878 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1879 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1938 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1939 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 1977 >gi|195149489|ref|XP_002015690.1| GL10886 [Drosophila persimilis] gi|194109537|gb|EDW31580.1| GL10886 [Drosophila persimilis] Length = 2045 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 110/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1673 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1732 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + +++ AE+ ++ + + ++ + + + K Sbjct: 1733 AAKEELQAQSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANSSSKGS 1792 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1793 LMVDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1849 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1850 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1909 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1910 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1969 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1970 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 2008 >gi|194856738|ref|XP_001968816.1| GG25079 [Drosophila erecta] gi|190660683|gb|EDV57875.1| GG25079 [Drosophila erecta] Length = 624 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 29/225 (12%), Positives = 77/225 (34%), Gaps = 25/225 (11%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + I D L + ++ + K + + + +QS + + +E Sbjct: 180 RKKINDELNEAVKELERLRKQFDETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 239 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWS---FLFSDFVEQKYFLPEEIHQRL 541 IN +++ D R + KL L + + EQ ++I Sbjct: 240 -------INESRRIKQTEYSEIDGRLSSEYDAKLKQSLQELRAQYEEQMRINRDDIESLY 292 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 ++ + R A S +T +I ++R + L + L + ++ + Sbjct: 293 EDK--------IRRLQEAAARTSNSTHKSIEELRSTRVRIDGLNAKINDLEQINADLNGR 344 Query: 602 IAQVTAKGEAEKTAI------LISILHEVHIQI-HQIESQEAMIE 639 I ++ + + ++ L L + ++ Q++ + +++ Sbjct: 345 IRELERQLDNDRERHGQEIAVLEKELIRLREEMTQQLQEYQDLMD 389 >gi|121710680|ref|XP_001272956.1| cell polarity protein (Tea1), putative [Aspergillus clavatus NRRL 1] gi|119401106|gb|EAW11530.1| cell polarity protein (Tea1), putative [Aspergillus clavatus NRRL 1] Length = 1502 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 27/279 (9%), Positives = 82/279 (29%), Gaps = 25/279 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + + + + + ++L++ I Sbjct: 1068 EERIAGLEAYQEQASREGLQLRRQLQAAMKESQAHATENRELKSKLENQLREAGALAIQH 1127 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 + ++ + D + + S + E L +L H + Sbjct: 1128 AALKDLLGERGVSYTDSRRSPRLESPGSRFGTPEQTRLRDLEQQLSTSLKAHEELKASFE 1187 Query: 503 QELADIRYDNNELQKLWSFLFS------DFVEQKYFLPEEIHQRL-----CERGFGELLK 551 + + ++ L + +V+ + + + L L+ Sbjct: 1188 NREQE---ADRAYREKLEQLENDYQSAVHYVKGTEKMLKRMKDELTRYKAQNTKIQADLE 1244 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-----FRLLSRQKEEIEKQIAQVT 606 R + A ++ A RQ QQ+L+ ++ L Q ++++ ++ Sbjct: 1245 AAQRSISQASGQASEAPAEWEAERQKLQQSLSELQKDTTSSIAALESQITKLKQDLSAAE 1304 Query: 607 AKGEAEKTA------ILISILHEVHIQIHQIESQEAMIE 639 A+ + ++ L + + ++ Q++ + A++E Sbjct: 1305 AEKDESRSEYESIKEELAAAAEKNRAELEQLKHENALLE 1343 >gi|67921632|ref|ZP_00515150.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal [Crocosphaera watsonii WH 8501] gi|67856744|gb|EAM51985.1| AAA ATPase, central region:Clp, N terminal:Clp, N terminal [Crocosphaera watsonii WH 8501] Length = 887 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 78/221 (35%), Gaps = 9/221 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K++ + R +++ + + +++ + ++ + ++AL+ Sbjct: 322 YRKHVEKDPALERRFQQVYVKQPSVDDTISILRGLKERYEVHHGVKITDSALVAAATLSN 381 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI---HQRLCERGFGE---- 548 + +++ I + KL + S VE + + ++L G E Sbjct: 382 RYITDRFLPDKAIDLVDEAAAKLKMEITSKPVELEDVDRRLMQLQMEKLSLEGEEERGML 441 Query: 549 -LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA 607 + K ++ E + +Q + + L Q+E++ QI Q Sbjct: 442 VVDKSSKERLEKIQQEIKELEQIHEKLGSQWQSEKQMLEEINSLKEQEEQLRHQIEQAER 501 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 + K A L L + Q+ E+Q I+ G+ R Sbjct: 502 DYDLNKAAQLKYGELEGLQRQLEAKETQLIDIQAQGETLLR 542 >gi|240140457|ref|YP_002964936.1| hypothetical protein MexAM1_META1p3978 [Methylobacterium extorquens AM1] gi|240010433|gb|ACS41659.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 312 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Query: 41 ACCPFHDEKTPSFHCNDS--KGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CP KT F +D +G + C C GD +LG F E +R+A + G Sbjct: 33 GPCPICGGKT-RFRYDDKEGRGTWICNHCGA-GDGADLAMKVLGIDFKELAERIAPLIGE 90 Query: 99 PLPVVDPKIEKKEKIQTDL 117 P K + + L Sbjct: 91 IKPTAPKKDRSHDDTRKSL 109 >gi|194759999|ref|XP_001962229.1| GF15360 [Drosophila ananassae] gi|190615926|gb|EDV31450.1| GF15360 [Drosophila ananassae] Length = 2165 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1775 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1834 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1835 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1887 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550 + + + ++ L + ++L ELL Sbjct: 1888 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1947 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607 + A ++R A K + L +Q +E++ ++ + A Sbjct: 1948 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 2007 Query: 608 KGEAEKTAILISILHEVHIQI 628 KG + L + E+ ++ Sbjct: 2008 KGGKKAIQKLEQRVRELENEL 2028 >gi|149723247|ref|XP_001487914.1| PREDICTED: leucine rich repeat containing 45 [Equus caballus] Length = 670 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 40/285 (14%), Positives = 103/285 (36%), Gaps = 15/285 (5%) Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 +L+ + L +R+ + + L++ + L Sbjct: 316 EQKAQDLGELLATAEQEQRSLVQRQAKEHRLEQQEAAERESKLLRDLSAANEKNLLLQSQ 375 Query: 425 SQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + +++ L ++ E + K A +++ ++ ++ + Sbjct: 376 VDELERKVKSLQEQLFLTRQELTNTSAELKMRAVQAEERLDLEKKRSRQSLEDSEQLRFK 435 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQ- 539 E + L +QE+ Q L R EL ++ + ++ + + L + +Q Sbjct: 436 EVE-HMTRHLEESEKAMQERVQRLEAARLSLEEELSRVKAVALNERGQAEEELIKAKNQV 494 Query: 540 RLCERG-FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 RL E+ L ++L + +T V +A L ++ L R+ +E+ Sbjct: 495 RLEEQQRLAHLEEKLRLLAQARDEAQSTCLQQKQTVADAQARASQLGQQVEGLRRRLKEL 554 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----SQEAMIE 639 ++++ + + E+ A + + E+ Q +++ +QEA+ E Sbjct: 555 QQEL----SNKDQERVAEVTRVRVELQEQNGRLQAELTAQEALKE 595 >gi|148223878|ref|NP_001084034.1| myosin, heavy chain 10, non-muscle [Xenopus laevis] gi|214624|gb|AAA49915.1| nonmuscle myosin heavy chain b [Xenopus laevis] Length = 1992 Score = 45.3 bits (105), Expect = 0.029, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 104/287 (36%), Gaps = 23/287 (8%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + EK I+ + E E ++ E+E L++ +++++ Sbjct: 893 DMEQKHQQLVEEKNILAEQLHAETELFAEAEEMRARLAIKKQEMEEILRDLEIRMEEEEE 952 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R Q + ++Q Q + K + +++ + LV + K Sbjct: 953 RNQVLQNEKKKMQTHVQDLEEQLDEEEAAQKLQLEKVTAEAKIKKMEEDILVLEDQNSKF 1012 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIH 538 L+E LL + E +LA+ L KL + +E++ E+ Sbjct: 1013 -LKEKKLLE------ERIAESTSQLAEEEEKAKNLAKLKNKQEMMISDLEERLKKEEKTR 1065 Query: 539 QRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 Q L + F + + +L Q+ + L A E +++ + + Sbjct: 1066 QELEKAKRKLDGETTDFQDQIAELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKN 1122 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + E++ QIA++ E+EK + + ++ ++ ++++ Sbjct: 1123 NTLKLVRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1169 Score = 44.5 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 25/243 (10%), Positives = 75/243 (30%), Gaps = 22/243 (9%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L + ++++ + Y + ++RLQQ + + +K Sbjct: 1406 EEVKKKLLKDTEGLGQRLEEKIIAYEKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1465 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L Sbjct: 1466 KKFDQLLAEEKNISARHAEERDRAEADAREKETKAL-----SLARALDEALEAQDEFERL 1520 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + + +L++ R + ++ Sbjct: 1521 NKQLRAEMEDLMSSKDDVGKN--------------VHELEKSKRALDQQVEEMRTQLEEL 1566 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q R + + + ++ Q + EK L+ + E+ ++ Q Sbjct: 1567 EDELQGTEDAKLRLEVNMQAMKAQFERDLQTRDEQNEEKKRALVKQVRELEAELEDERKQ 1626 Query: 635 EAM 637 AM Sbjct: 1627 RAM 1629 >gi|328790487|ref|XP_623323.3| PREDICTED: myosin heavy chain, non-muscle [Apis mellifera] Length = 1967 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 35/283 (12%), Positives = 94/283 (33%), Gaps = 6/283 (2%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 + R Y + EK ++ ++ E E + ELE L + I+ Sbjct: 873 HSAQEYERKYQQAMEEKTMLAEQLQAEVELCAEAEEMRARLAARKQELEEILHDLETRIE 932 Query: 417 DQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 +++ R + +LQ + +K + Q + ++ L Sbjct: 933 EEEERSAGLAQEKKKLQLNISDLEEQLEEEEAARQKLQLEKVQCDAKIKKLEEDLALSDD 992 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQE----LADIRYDNNE-LQKLWSFLFSDFVEQKY 531 + + L+E +L N + + +E L+ ++ + + L L D +++ Sbjct: 993 TNQKLLKEKKILEERANDLSQTLAEEEEKAKHLSKLKAKHEATIADLEERLLKDHQQRQE 1052 Query: 532 FLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + E L + QV + L E + + + A + + Sbjct: 1053 VDRSKRKIETEVSDLKEQLAERKTQVEEFQLQLGKREEELNQIMAKMDEEGAAKAQAQKA 1112 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 R+ E ++ + + + + +++ ++ ++++ Sbjct: 1113 LRELESQLAELQEDLEAEKIARGKAE-KLKRDLNEELEALKNE 1154 Score = 40.6 bits (93), Expect = 0.74, Method: Composition-based stats. Identities = 29/329 (8%), Positives = 97/329 (29%), Gaps = 36/329 (10%) Query: 335 IDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRS 394 ++ + + +D + + + K + L + + Sbjct: 1605 LEDERKQKAAAIAQRKKMEADYKDIEQQLEMHNKVKEDALKQLKKLQAQIKDCTRETEEA 1664 Query: 395 FNTPDERAELEIHLKNCINHIKD-------------------QKLRYYYSQAI---RDRL 432 DE A + + ++ + R + + ++ Sbjct: 1665 RAARDELAASAKETEKKVKSLEADLMQLTEDFASSERARRAAENERDELQEELNNNANKG 1724 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 + + + ++ + + + + + E + L Sbjct: 1725 TLMLDEKRRLEARIATLEEELEEEQSNAELLMDRARKAQITIEQLTNDLTTERSTTQKLE 1784 Query: 493 NHPAILQEQYQELAD--IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 +H +L+ Q +EL + + K + + + + + ++ Sbjct: 1785 SHKLLLERQNKELKAKLTELETAQRAKTKATIQQLESKINNLDEQLETEAKERFAQQKIN 1844 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ------ 604 ++L++++++ L N ++ QA + R + L RQ +E E++I++ Sbjct: 1845 RKLEKKLKELSLQLEDERRNSDQYKE---QAEKVNARMKALKRQLDEAEEEISRHKAMKR 1901 Query: 605 -VTAKGEA--EKTAILISILHEVHIQIHQ 630 + + E L + + ++ + Sbjct: 1902 KAQREMDDMLESQEELTREVANLKNKLRR 1930 >gi|327468892|gb|EGF14364.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK330] Length = 631 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + + + ++ ++ L +R L Q E+++ QI+ Sbjct: 532 KAEQEALRE---ETEQSSPDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 588 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ EA A + L E QI Q+ + +EAM+E Sbjct: 589 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 623 >gi|327275905|ref|XP_003222712.1| PREDICTED: neurabin-2-like [Anolis carolinensis] Length = 1379 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 27/229 (11%), Positives = 81/229 (35%), Gaps = 17/229 (7%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG--PSQRLMQSSLVKGKLSKKPSLR 483 + +QQ ++ + + + + ++ G + + S + + Sbjct: 570 SEVAQLIQQTLEQERWQREMMEQRYTQYTEEDEETGEYATDEDEEMSPMFPSSEMAIEVF 629 Query: 484 E----AALLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E +L + P ++ + + E+Q+L L S E+ + E+ Sbjct: 630 ELAENEDMLSPVEMDPEKLVHKFKELQIKHAVTEAEIQQLKRKLQSIEQEKARWRLEKAQ 689 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ---- 594 E +++L+ +A + ++ + + YQ Y + + L ++ Sbjct: 690 LEQSVEENKERMEKLEGYWMEAQNLCQAVDEHLKETQAQYQTLERKYSKAKRLIKEYQQK 749 Query: 595 ------KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 KE +++I + + E+ L + E+ ++ ++++ + Sbjct: 750 EIEFLKKETAQRRIQEESEMAHKEEVDKLQEKISELEAKLQTLKNESTL 798 >gi|295689699|ref|YP_003593392.1| replicative DNA helicase [Caulobacter segnis ATCC 21756] gi|295431602|gb|ADG10774.1| replicative DNA helicase [Caulobacter segnis ATCC 21756] Length = 505 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 11/176 (6%) Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD 525 ++ E ALL L+ A + L + Q+L+ + + Sbjct: 11 RPPIEEPTINVAPHNMEAEQALLGILLYDNAAYERLTDNLQARCFYEPFHQRLFQAVETH 70 Query: 526 FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALY 585 + + P + + L L + + A AN D + Sbjct: 71 VRKGQLAEPILLADEFKNDPAFQELGGL--RYLADLVDRAPPAANAGDYARVIFDL---- 124 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 L R+ I IA A+G ++ + Q++ + A GF Sbjct: 125 ----SLRRELIRIGGDIATA-AQGAGDEKRAARDQIEAAEQQLYSLAESGAASSGF 175 >gi|553596|gb|AAA59888.1| cellular myosin heavy chain [Homo sapiens] Length = 1337 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 EKL ++ + E E ++ ELE + +++++ R + QA + Sbjct: 880 AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++QQ Q+ + +K + + ++ + + +E LL Sbjct: 940 KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + E L + + L KL + E +L Sbjct: 999 -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++L R+ + T D Q L + L Q + E+++ A+ E Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093 Query: 611 AEKTAILIS--ILHEVHIQIHQIES 633 E ++ + E+ QI +++ Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118 >gi|75762595|ref|ZP_00742445.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899706|ref|YP_002448117.1| MutS2 family protein [Bacillus cereus G9842] gi|228903069|ref|ZP_04067206.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL 4222] gi|226723045|sp|B7IJV1|MUTS2_BACC2 RecName: Full=MutS2 protein gi|74489915|gb|EAO53281.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542145|gb|ACK94539.1| MutS2 family protein [Bacillus cereus G9842] gi|228856555|gb|EEN01078.1| hypothetical protein bthur0014_42360 [Bacillus thuringiensis IBL 4222] Length = 786 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|327473273|gb|EGF18693.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK408] Length = 641 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 65/158 (41%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSEAGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + + D+ + + + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAELEALRE-ETEQVDSDKPAPANDYQLQ--KENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ EA A + L E QI Q+ + +EAM+E Sbjct: 599 QLQEAMEATNDA---AELMESQQQIDQLTAAQEEAMLE 633 >gi|119961825|ref|YP_949806.1| replicative DNA helicase [Arthrobacter aurescens TC1] gi|119948684|gb|ABM07595.1| replicative DNA helicase [Arthrobacter aurescens TC1] Length = 462 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 16/175 (9%), Positives = 52/175 (29%), Gaps = 14/175 (8%) Query: 468 QSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 + + + E ++L ++ + + + + + + ++ + + Sbjct: 12 SRASDSSRKPPQDIPAEQSVLGGMMLSKDAIADVVEIVRGHDFYRPAHETIYESIIDLYG 71 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 + + L +RG + ++ L A GY + Sbjct: 72 RGEPADAVTVSDELTKRG---EINRIGGPAYLHELIQTVPTA----ANAGYYAEIVA--- 121 Query: 588 FRLLSRQKEEIEKQIAQVTAKGE---AEKTAILISILHEVHIQIHQIESQEAMIE 639 R + R+ +I Q+ + + + ++ V + E A+ + Sbjct: 122 ERAVLRRLVNAGTKIVQMGYGQDGEVEDLVNQAQAEVYAV-AEKRTAEDYVALKD 175 >gi|321399203|emb|CAM66680.2| putative kinesin K39 [Leishmania infantum JPCM5] Length = 2926 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 92/277 (33%), Gaps = 6/277 (2%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1168 KGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1227 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + + ++ + + + A D + +L +++ K +L + + Sbjct: 1228 LEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1287 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541 + ++ A+ + + + N E ++L S L E E + +L Sbjct: 1288 GSEAEAAKEDNEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQL 1347 Query: 542 CER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E E + +R + + EA D Q ++ + ++E ++ Sbjct: 1348 EEATQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAERERLQ 1407 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ E E L L E Q+ + ++ Sbjct: 1408 SELEEKGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1444 Score = 44.1 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 95/277 (34%), Gaps = 6/277 (2%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1007 KGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNETLRGQ 1066 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + + +K + + + A D + +L +++ K +L + + Sbjct: 1067 LEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1126 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541 + + A+ + + + N E ++L S L E + E + +L Sbjct: 1127 GSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDSEALRGQL 1186 Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E + E + +R + + EA D Q ++ + ++E ++ Sbjct: 1187 EETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQ 1246 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ E E L L E + + +++S+ Sbjct: 1247 SELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1283 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 73/212 (34%), Gaps = 8/212 (3%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++RLQ ++ +E + ++ + + + + EA Sbjct: 2075 KERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAA 2134 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544 ++ A+ + + + N E ++L S L E + E + +L E + Sbjct: 2135 KE--DNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQ 2192 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E + +R + + EA D Q ++ + ++E ++ ++ + Sbjct: 2193 QLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQSELEE 2252 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ E E L L E Q+ + ++ Sbjct: 2253 KGSEAEAAKEDNEALRGQLEEATQQLEEANAE 2284 Score = 40.6 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 92/285 (32%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + + E+ + + E + + AE E + + Sbjct: 1118 RLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKE 1177 Query: 424 YSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 S+A+R +L++ Q+ E ++ + ++ L + + Sbjct: 1178 DSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEE 1237 Query: 481 SLREAALLLTLINHP----AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF--L 533 + E L + + +E + L + N E ++L S L E + Sbjct: 1238 ANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKED 1297 Query: 534 PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E + +L E + E + +R + + A D Q ++ Sbjct: 1298 NEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQLEEATQQLEEA 1357 Query: 592 SRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 + ++E ++ ++ + ++ E E L L E Q+ + ++ Sbjct: 1358 NAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAE 1402 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544 + + + + ++ DI N E ++L S L E + E + +L E + Sbjct: 929 ALALENTTLRNARDKDQRDIIVTNAEKERLQSELVEKGSEAEAAKEDSEALRGQLEETTQ 988 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E + +R + + EA D Q ++ + ++E ++ ++ + Sbjct: 989 QLEEANAERERLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEE 1048 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ E E L L E Q+ + ++ Sbjct: 1049 KGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1080 Score = 39.5 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 27/298 (9%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1413 KGSEAEAAKEDNETLRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1472 Query: 424 YSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +A + RLQ ++ +E + ++ + + S L + + + Sbjct: 1473 LEEANAEKERLQSELEEKGSEAEAAKEDNETLRGQLEEANAEKERLHSELEEKGSEAEAA 1532 Query: 482 LREAALLLTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYF 532 + L + + E ++ ++ + + L L E Q Sbjct: 1533 KEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSEL 1592 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L QL+ + +A E ++ + +A A K L Sbjct: 1593 EEKGSEAAAAKEDSEALRGQLEEATQQLEEANAEKERLQSELEEKGSEAAAAKKDNEALR 1652 Query: 593 RQKEEIEKQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQ 634 Q EE +Q+ + A+ E E L L E + + +++S+ Sbjct: 1653 GQLEETAQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1710 >gi|260177247|gb|ACX33967.1| putative DnaB replicative DNA helicase [uncultured bacterium RM35] Length = 466 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 3/129 (2%) Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 E +++ ++ HP L + L + + L+ ++ + K Sbjct: 10 PRPTLPHSQEAEESVIGGILLHPTTLNRVAEFLHADDFHHPALKVIYEAMLELERSSKPI 69 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + +++ E L +L L ++ V+ + + + + R L Sbjct: 70 DSLTVVEQMKA---SETLDKLRAFNGPDYLVELMSKVITVENIEYHGRMVHGKATARRLV 126 Query: 593 RQKEEIEKQ 601 + I + Sbjct: 127 QACSSIAAR 135 >gi|170031764|ref|XP_001843754.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167870925|gb|EDS34308.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 1878 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 32/207 (15%), Positives = 63/207 (30%), Gaps = 7/207 (3%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492 + N + P R +S + E L L Sbjct: 696 DFLPPPPSTSLILVAKSFFNTGRKLSPSPPNRRQSPMEKDEGISDEDDPAELRLQLELNE 755 Query: 493 NHPAILQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 A+L+ + EL + E ++L L S E G Sbjct: 756 QETAVLRRKIGELETENKRSREHVKELQESLISKTKEMDRQSKFPSLLGSKSGGASGSKD 815 Query: 552 QLDRQVRD--AGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK- 608 LD + S + I R+ ++A L ++ L ++ ++ +I Q+ K Sbjct: 816 SLDEKKIKVLEEEMSELRKKLIEKDREFEREANVLRQKTHTLEQEIDKQTAEIKQLQQKK 875 Query: 609 --GEAEKTAILISILHEVHIQIHQIES 633 G + L + + E+ + ++E+ Sbjct: 876 IAGNEAEAKKLNTTIQELQKEKTELEA 902 Score = 38.3 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 15/144 (10%) Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 D+ + +L + S E + + R LL++L + +A+ Sbjct: 333 DHTDNHELQEEIESLRRELETV--KARCDRAEREKSDILLRRLASMDTVSNKTAASEALK 390 Query: 571 IVDVRQGYQQALALYK-RFRLLSRQKEEIEKQIA---------QVTAKGEAEKT--AILI 618 + +Q + + + L+ + +EIE I Q+ K E +T L+ Sbjct: 391 LQQKVNEQKQLIEDLQDEKKFLTAKVKEIESDIKVRGVKNVEEQLRQKLEQAETLCEELM 450 Query: 619 SILHEVHIQIHQIESQ-EAMIEGF 641 E+ ++ +E++ E M + F Sbjct: 451 DENEEIKREMRTMEAEIEEMHDNF 474 >gi|146081628|ref|XP_001464299.1| kinesin K39 [Leishmania infantum JPCM5] Length = 2926 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 33/277 (11%), Positives = 92/277 (33%), Gaps = 6/277 (2%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1168 KGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1227 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + + ++ + + + A D + +L +++ K +L + + Sbjct: 1228 LEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1287 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541 + ++ A+ + + + N E ++L S L E E + +L Sbjct: 1288 GSEAEAAKEDNEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQL 1347 Query: 542 CER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E E + +R + + EA D Q ++ + ++E ++ Sbjct: 1348 EEATQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAERERLQ 1407 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ E E L L E Q+ + ++ Sbjct: 1408 SELEEKGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1444 Score = 44.1 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 95/277 (34%), Gaps = 6/277 (2%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1007 KGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEEKGSEAEAAKEDNETLRGQ 1066 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + + +K + + + A D + +L +++ K +L + + Sbjct: 1067 LEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEK 1126 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRL 541 + + A+ + + + N E ++L S L E + E + +L Sbjct: 1127 GSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDSEALRGQL 1186 Query: 542 CE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 E + E + +R + + EA D Q ++ + ++E ++ Sbjct: 1187 EETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQ 1246 Query: 600 KQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ + ++ E E L L E + + +++S+ Sbjct: 1247 SELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1283 Score = 41.8 bits (96), Expect = 0.36, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 73/212 (34%), Gaps = 8/212 (3%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 ++RLQ ++ +E + ++ + + + + EA Sbjct: 2075 KERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAA 2134 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544 ++ A+ + + + N E ++L S L E + E + +L E + Sbjct: 2135 KE--DNEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQ 2192 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E + +R + + EA D Q ++ + ++E ++ ++ + Sbjct: 2193 QLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEEANAERERLQSELEE 2252 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ E E L L E Q+ + ++ Sbjct: 2253 KGSEAEAAKEDNEALRGQLEEATQQLEEANAE 2284 Score = 40.6 bits (93), Expect = 0.79, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 92/285 (32%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R + + E+ + + E + + AE E + + Sbjct: 1118 RLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKE 1177 Query: 424 YSQAIRDRLQQLFQKY---ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 S+A+R +L++ Q+ E ++ + ++ L + + Sbjct: 1178 DSEALRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEETTQQLEE 1237 Query: 481 SLREAALLLTLINHP----AILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF--L 533 + E L + + +E + L + N E ++L S L E + Sbjct: 1238 ANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKED 1297 Query: 534 PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 E + +L E + E + +R + + A D Q ++ Sbjct: 1298 NEALRGQLEETTQQLEEANAENERLQSELEEKGSEAAAAKEDSEALRGQLEEATQQLEEA 1357 Query: 592 SRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 + ++E ++ ++ + ++ E E L L E Q+ + ++ Sbjct: 1358 NAERERLQSELEEKGSEAEAAKEDNEALRGQLEEATQQLEEANAE 1402 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF--LPEEIHQRLCE--R 544 + + + + ++ DI N E ++L S L E + E + +L E + Sbjct: 929 ALALENTTLRNARDKDQRDIIVTNAEKERLQSELVEKGSEAEAAKEDSEALRGQLEETTQ 988 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 E + +R + + EA D Q ++ + ++E ++ ++ + Sbjct: 989 QLEEANAERERLQSELEEKGSEAEAAKEDSEALRGQLEETTQQLEEANAERERLQSELEE 1048 Query: 605 VTAKGE--AEKTAILISILHEVHIQIHQIESQ 634 ++ E E L L E Q+ + ++ Sbjct: 1049 KGSEAEAAKEDNETLRGQLEETTQQLEEANAE 1080 Score = 39.5 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 27/298 (9%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A ++ ++ ++ E + + E + ++ LR Sbjct: 1413 KGSEAEAAKEDNETLRGQLEETTQQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQ 1472 Query: 424 YSQAIRD--RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 +A + RLQ ++ +E + ++ + + S L + + + Sbjct: 1473 LEEANAEKERLQSELEEKGSEAEAAKEDNETLRGQLEEANAEKERLHSELEEKGSEAEAA 1532 Query: 482 LREAALLLTLINH-----PAILQEQYQELADIRYDNNELQKLWSFLFSDFVE----QKYF 532 + L + + E ++ ++ + + L L E Q Sbjct: 1533 KEDNEALRGQLEEANAEKERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSEL 1592 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + + L QL+ + +A E ++ + +A A K L Sbjct: 1593 EEKGSEAAAAKEDSEALRGQLEEATQQLEEANAEKERLQSELEEKGSEAAAAKKDNEALR 1652 Query: 593 RQKEEIEKQIAQVTAKGE----------------AEKTAILISILHEVHIQIHQIESQ 634 Q EE +Q+ + A+ E E L L E + + +++S+ Sbjct: 1653 GQLEETAQQLEEANAERERLQSELEEKGSEAEAAKEDNEALRGQLEEANAEKERLQSE 1710 >gi|119495192|ref|XP_001264386.1| intracellular protein transport protein (UsoA), putative [Neosartorya fischeri NRRL 181] gi|119412548|gb|EAW22489.1| intracellular protein transport protein (UsoA), putative [Neosartorya fischeri NRRL 181] Length = 1055 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 57/159 (35%), Gaps = 19/159 (11%) Query: 495 PAILQEQYQELADIRYDNNELQKL----WSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 P + Q+ + + +S L + I + EL+ Sbjct: 620 PQTVGGQFDAGLPDIFFDRTFIDFLKDNFSRLIRAIDREPGLEISVITNGIQRGVSRELV 679 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS-------RQKEE-----I 598 L ++ + E++++++ +Q +++F+ LS RQ E Sbjct: 680 DSLRAELEERSQAVQKLESDLLNLGNQLEQEQLEHRKFKDLSSSEASKIRQINESLQRNH 739 Query: 599 EKQIAQVTAKGEAEKTAILISI---LHEVHIQIHQIESQ 634 E+++A++ + + K +L L + Q+ + ++ Sbjct: 740 EQELARLEEQHKHAKNELLKQHGDQLRAIDNQLKETSAE 778 Score = 42.2 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 95/281 (33%), Gaps = 21/281 (7%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK---------D 417 + ++ + R E + + L+ N +K Sbjct: 724 EASKIRQINESLQRNHEQELARLEEQHKHAKNELLKQHGDQLRAIDNQLKETSAEYERRS 783 Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 QK++ + + D +++ + + R + Q ++ KG+ Sbjct: 784 QKVKKLHDAEVADLQKKI--QSLELELTRVREQSADEIGSLQSTIQTMRSEADQSKGQHW 841 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + + E+ + + +++++ ++ +Q+L S L E ++ Sbjct: 842 AQVAELESTIQSLRSELDENKAKHADQISNL---SDTIQRLQSEL-DKAKEGHEAELADL 897 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + ++ + ++ L + + ++ + + ++ L S + Sbjct: 898 RAKAQTVQSELDTAKQEHETEISGLRLKAQSLQSELDSGTEKSKEDLQAVHDDY--SSKL 955 Query: 596 EEIEKQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQ 634 E+EK++ +K E + L S L EV Q+ + +++ Sbjct: 956 SELEKRVKLAESKAEKAEADALRSAETLKEVQAQLGKTKAE 996 >gi|153951828|ref|YP_001398413.1| replicative DNA helicase [Campylobacter jejuni subsp. doylei 269.97] gi|152939274|gb|ABS44015.1| replicative DNA helicase [Campylobacter jejuni subsp. doylei 269.97] Length = 460 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 52/170 (30%), Gaps = 15/170 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I ++ + + ++ + + ++ + + Sbjct: 10 LERAILSSCIMSEEAYASIAGDIGPKDFSLKAHEDIFKAIIACSNNKEPISISFLRKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E +++ L +R EI ++ Sbjct: 68 KKIDEQILAEILATPSMIDLPAYVNELREKSIKRQLLSFAHLLPTRINENRVVSEIADEM 127 Query: 603 --------AQVTAKGEAEKTA---ILISILHEVHIQIHQIESQEAMIEGF 641 +V +K E L +I + ++ + GF Sbjct: 128 GKEIFSITNRVNSKDIKEVDMVISELFEEFK--KRKILENKNIIGLDTGF 175 >gi|157875544|ref|XP_001686160.1| hypothetical protein [Leishmania major strain Friedlin] gi|68129234|emb|CAJ07774.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 3167 Score = 45.3 bits (105), Expect = 0.030, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 79/228 (34%), Gaps = 7/228 (3%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +R + ++ E ++ A D+ + + L K + + E Sbjct: 1026 AEEKAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAE 1085 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLC 542 L + +E + A++ E +KL + L E + E + L Sbjct: 1086 NRRLAAELERAQ--EEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELE 1143 Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L +L+R +A +A + + + + + L+ + + ++ Sbjct: 1144 RAQEEAERLAAELERAQEEAERLAAELDRAQEEAEKLAAELERAQEEAEKLAAELDRAQE 1203 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 + ++ A+ E + + E+ + E A +E + + RL Sbjct: 1204 EAERLAAELEKAQ-EEAERLAAELEKTQEEAERLAAELEKAQEEAERL 1250 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 11/214 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +R + ++ E ++ A D+ + + L K + + E Sbjct: 977 AEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAE 1036 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRLC 542 L + +E + A++ E +KL + L E + E + L Sbjct: 1037 NRRLAAELERAQ--EEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELE 1094 Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L +LDR +A +A E + +Q + L R +EE E+ Sbjct: 1095 RAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAE---RQKAENRRLAAELERAQEEAER 1151 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A++ E+ L + L + ++ ++ Sbjct: 1152 LAAELERA--QEEAERLAAELDRAQEEAEKLAAE 1183 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 3/213 (1%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +Q +RL ++ E + ++ Q K + E Sbjct: 1145 AQEEAERLAAELERAQEEAERLAAELDRAQEEAEKLAAELERAQEEAEKLAAELDRAQEE 1204 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A L + +E + A++ E ++L + L E + + Sbjct: 1205 AERLAAELE--KAQEEAERLAAELEKTQEEAERLAAELEKAQEEAERLAADLEKAEEDAE 1262 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603 ++L +V A + A++ + ++ A +R L+R +EE E+ A Sbjct: 1263 RQKAEKERLAAEVDRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLAA 1322 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 + E + + + E + A Sbjct: 1323 DLEKAEEDAERQKADNRRLAADNERLAAELERA 1355 Score = 44.5 bits (103), Expect = 0.051, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 72/221 (32%), Gaps = 12/221 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-----KLSKK 479 +Q ++L +K E ++ A ++ + + L + KL+ Sbjct: 1642 AQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAAD 1701 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537 E ++ + + + A++ E ++L + L + E++ E + Sbjct: 1702 LEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERL 1761 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + L +L++ +A +A E + + L L R + Sbjct: 1762 AAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL---AAELDRAQ 1818 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 EE EK A + E + + + E + A Sbjct: 1819 EEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERA 1859 Score = 44.5 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 12/218 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +Q +RL + E +K +++ R + + L + + + E Sbjct: 998 AQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAENRRLAAELERAQEEAERLAAE 1057 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L + + + + E ++L + L E + E + Sbjct: 1058 --LDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELDRAQEEAE 1115 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKE 596 L++ + + + A + ++ ++ A +R + L R +E Sbjct: 1116 KLAADLEKAEEEAERQKAENRRLAAELERAQEEAERLAAELERAQEEAERLAAELDRAQE 1175 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E EK A++ E+ L + L + ++ ++ Sbjct: 1176 EAEKLAAELERA--QEEAEKLAAELDRAQEEAERLAAE 1211 Score = 43.7 bits (101), Expect = 0.090, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 72/219 (32%), Gaps = 12/219 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG-----KLSKK 479 +Q +RL + E +K +++ + + L + KL+ Sbjct: 1355 AQEEAERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAEKLAAD 1414 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537 E ++ + + + A++ E ++L + L + E++ E + Sbjct: 1415 LEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERL 1474 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 L + L +L++ +A +A E + + L L R + Sbjct: 1475 AAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL---AAELDRAQ 1531 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 EE EK A + E + + + Q E++ Sbjct: 1532 EEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAE 1570 Score = 42.2 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 74/220 (33%), Gaps = 15/220 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +Q +RL + E +K +++ + + L + + + E Sbjct: 2559 AQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELDRAQEEAERLAAE 2618 Query: 485 ----AALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLF--SDFVEQKYFLPEEI 537 L QE+ + LA ++ E +KL + L + E++ E + Sbjct: 2619 LERAQEEAERLAAELDRAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERL 2678 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLL 591 L + L +L++ +A +A E D + L + L Sbjct: 2679 AAELNRAQEEAERLAAELEKAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAEL 2738 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 R +EE E+ A++ E+ L + L + ++ Sbjct: 2739 DRAQEEAERLAAELDRA--QEEAERLAAELDRAQEEAEKL 2776 Score = 42.2 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 6/218 (2%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSKK 479 +Q ++L +K E ++ N + + + L ++ KL+ Sbjct: 2650 AQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAERLAAELEKAQEEAEKLAAD 2709 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 E ++ + + + A++ E ++L + L E + E Sbjct: 2710 LEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELDRAQEEAERLAAELDRA 2769 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEI 598 + L++ + + A+ + +A +R L R +EE Sbjct: 2770 QEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELDRAQEEA 2829 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 EK A + E + + + E A Sbjct: 2830 EKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRA 2867 Score = 41.8 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 77/214 (35%), Gaps = 8/214 (3%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ + L++ ++ + + R N R + +Q + + +++ + R+ Sbjct: 925 AEKLAADLEKAEEEAERQKAENRRLAADNERLAAELDRAQEEAEKLAADLEKAEEEAERQ 984 Query: 485 AALLLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQKYFLPEE--IHQRL 541 A L QE+ + LA ++ E +KL + L + + E + L Sbjct: 985 KAENRRLAAELERAQEEAERLAAELDRAQEEAEKLAADLEKAEEKAERQKAENRRLAAEL 1044 Query: 542 C--ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + L +LDR +A +A E + +Q + L R +EE E Sbjct: 1045 ERAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAE---RQKAENRRLAAELERAQEEAE 1101 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 + A++ E + E + + E+ Sbjct: 1102 RLAAELDRAQEEAEKLAADLEKAEEEAERQKAEN 1135 Score = 41.4 bits (95), Expect = 0.47, Method: Composition-based stats. Identities = 38/273 (13%), Positives = 88/273 (32%), Gaps = 11/273 (4%) Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 + E E + + E E + +D + + + + + + ++ + Sbjct: 1230 QEEAERLAAELEKAQEEAERLAADLEKAEEDAERQKAEKERLAAEVDRAQEEAEKLAADL 1289 Query: 447 GRYWKKNARHR-DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 + + R + D + + L ++ +L+ E ++ + + + Sbjct: 1290 EKAEEDAERQKADNERLAAELNRAQEEAERLAADLEKAEEDAERQKADNRRLAADNERLA 1349 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 A++ E ++L + L E + E + L +LDR +A Sbjct: 1350 AELERAQEEAERLAAELDRAQEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAE 1409 Query: 562 LWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAIL 617 +A E D + L + L R +EE E+ A + E + Sbjct: 1410 KLAADLEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEEDAERQKA 1469 Query: 618 ISILH--EVHIQIHQIESQEAMIEGFGKMSGRL 648 + E+ + E A +E + + RL Sbjct: 1470 DNERLAAELDRAQEEAERLAAELEKAQEEAERL 1502 Score = 41.4 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 28/265 (10%), Positives = 80/265 (30%), Gaps = 13/265 (4%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 D+ E R ++ A + + R +Q ++ Sbjct: 2061 RTQEEAEKLAADLEKAEEDAERQKADNEQLAAELNRAQEEAKRLAADLER---AQEEAEK 2117 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 L ++ E +K +++ R + + + + + EA Sbjct: 2118 LAAELERAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELERTQEEAE----- 2172 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + + ++L + L E + + + Sbjct: 2173 ----KLAADLEKAEEEAERQKADNERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNE 2228 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGE 610 +L ++ A + A++ + ++ A +R L+R +EE E+ A++ E Sbjct: 2229 RLAAELNRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQEEAERLAAELERAQE 2288 Query: 611 AEKTAILISILHEVHIQIHQIESQE 635 + E + + ++++ Sbjct: 2289 EAEKLAADLEKAEEEAERQKADNEQ 2313 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 18/278 (6%) Query: 367 GKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 + A + + ++ +E + ++ E K + + R +Q Sbjct: 1622 QEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELER---AQ 1678 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 +RL + E +K +++ R + + + + EA Sbjct: 1679 EEAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAE 1738 Query: 487 LLLTLINHPAILQE-----QYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEI 537 L + E + A++ E ++L + L E + + Sbjct: 1739 RLAADLEKAEEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQE 1798 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSR 593 + L +LDR +A +A E + + L + L R Sbjct: 1799 EAERQKADKERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELER 1858 Query: 594 QKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 +EE E+ A++ E+ L + + + Q+ Sbjct: 1859 AQEEAERLAAELERA--QEEAERLAAEVDRAQEEAEQL 1894 Score = 39.1 bits (89), Expect = 2.1, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 63/218 (28%), Gaps = 20/218 (9%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSL 482 +Q ++L +K + ++ A ++ Q + L K Sbjct: 1404 AQEEAEKLAADLEKAEEDAERQKADNERLAADNERLAAELDRAQEEAERLAADLEKAEED 1463 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIH 538 E + + A++ E ++L + L E + + Sbjct: 1464 AERQ-----------KADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEE 1512 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + L +LDR +A +A E D + L L+R +EE Sbjct: 1513 AERQKADKERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNERL---AAELNRAQEEA 1569 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 E+ A + E + + + E + A Sbjct: 1570 ERLAADLEKAEEDAERQKADNRRLAADNERLAAELERA 1607 Score = 38.7 bits (88), Expect = 3.1, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 64/196 (32%), Gaps = 3/196 (1%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +R + ++ E + +K A ++ + + L K + + + Sbjct: 2300 AEEEAERQKADNEQLAAELNRAQEEAEKLAAELEKAQEEAEKLAADLEKAEEEAERQKAD 2359 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L +N +E + A++ E ++L + L E + E + Sbjct: 2360 NERLAAELNRAQ--EEAEKLAAELEKAQEEAERLAAELEKAQEEAERLAAELNRAQEEAE 2417 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIA 603 L++ + + + ++A +R L+R +EE EK A Sbjct: 2418 RLAAELERAQEEAERLAAELDRAQEEAERLAAELERAQEEAERLAAELNRAQEEAEKLAA 2477 Query: 604 QVTAKGEAEKTAILIS 619 + E + + Sbjct: 2478 NLEKAQEEAERQKAHN 2493 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 72/222 (32%), Gaps = 13/222 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK--GKLSKKPSL 482 +Q ++L +K + ++ A ++ Q + L K Sbjct: 1691 AQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAADLEKAEED 1750 Query: 483 REAALL--LTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQ--KYFLPEEI 537 E L QE+ + LA ++ E ++L + L E + E + Sbjct: 1751 AERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAELEKAQEEAERQKADKERL 1810 Query: 538 HQRLC--ERGFGELLKQLDRQVRDAGLWSATTE---ANIVDVRQGYQQALALYKRFRL-L 591 L + +L L++ +A A A+ + ++A +R L Sbjct: 1811 AAELDRAQEEAEKLAADLEKAEEEAERQKADNRRLAADNERLAAELERAQEEAERLAAEL 1870 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 R +EE E+ A+V E + E + + ++ Sbjct: 1871 ERAQEEAERLAAEVDRAQEEAEQLAADLEKAEEEAERQKADN 1912 Score = 37.6 bits (85), Expect = 7.4, Method: Composition-based stats. Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +Q +RL + E +K +++ + + L + + + E Sbjct: 2636 AQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQEEAERLAAE 2695 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLC 542 + + + D + ++L + + +++ E + L Sbjct: 2696 LE--KAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQEEAERLAAELD 2753 Query: 543 --ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL----YKRFRLLSRQKE 596 + L +LDR +A +A E D + L + L R +E Sbjct: 2754 RAQEEAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNRRLAADNERLAAELDRAQE 2813 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 E E+ A++ E + E + + ++ Sbjct: 2814 EAERLAAELDRAQEEAEKLAADLEKAEEDAERQKADN 2850 Score = 37.2 bits (84), Expect = 8.6, Method: Composition-based stats. Identities = 31/215 (14%), Positives = 68/215 (31%), Gaps = 9/215 (4%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + +LQ+ Q + + R N R + +Q + + +++ + + AA Sbjct: 823 LARQLQEAQQDAERQKADNRRLAADNERLAAELERAQEEAEKLAAELDRAQEEAEKLAAD 882 Query: 488 LLTLINHPAILQEQYQELA-DIRYDNNELQKLWSFLFSDFVEQK----YFLPEEIHQRLC 542 L + + LA ++ E ++L + L E + E Sbjct: 883 LEKAEEEAEKQKAHNERLAAELERAQEEAERLAAELDRALEEAEKLAADLEKAEEEAERQ 942 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVR----QGYQQALALYKRFRLLSRQKEEI 598 + L +R + E D+ + +Q + L R +EE Sbjct: 943 KAENRRLAADNERLAAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEEA 1002 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 E+ A++ E + E + + E+ Sbjct: 1003 ERLAAELDRAQEEAEKLAADLEKAEEKAERQKAEN 1037 Score = 37.2 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 23/217 (10%), Positives = 60/217 (27%), Gaps = 17/217 (7%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 +Q +RL +K E ++ ++ Q + + E Sbjct: 2517 AQEEAERLAAELEKAREEAERLAAELERAREEAERLAAELEKAQEEAERLAAELDRAQEE 2576 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 A + + + + + ++L + L E + E + Sbjct: 2577 AE---------KLAADLEKAEEEAERQKADNERLAAELDRAQEEAERLAAELERAQEEAE 2627 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL--------LSRQKE 596 L + + + + ++A +R + L+R +E Sbjct: 2628 RLAAELDRAQEEAERLAAELDRAQEEAEKLAADLEKAEEEAERQKADNERLAAELNRAQE 2687 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 E E+ A++ E + E + + ++ Sbjct: 2688 EAERLAAELEKAQEEAEKLAADLEKAEEDAERQKADN 2724 Score = 37.2 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 14/242 (5%) Query: 401 RAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK 460 + E E + +D + + ++ + L + ++ + + ++ R + Sbjct: 1447 QEEAERLAADLEKAEEDAERQKADNERLAAELDRAQEEAERLAAELEKAQEEAERLAAEL 1506 Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQE--------LADIRYDN 512 +Q + + R L +E + A++ Sbjct: 1507 EKAQEEAERQKADKERLAAELDRAQEEAEKLAADLEKAEEDAERQKADNERLAAELNRAQ 1566 Query: 513 NELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIV 572 E ++L + L ++ ++ R L +L+R +A +A E Sbjct: 1567 EEAERLAADLEKA---EEDAERQKADNRRLAADNERLAAELERAQEEAERLAAELEKAQE 1623 Query: 573 DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE 632 + + L L R +EE EK A + E + + ++ Q E Sbjct: 1624 EAERQKADKERL---AAELDRAQEEAEKLAADLEKAEEEAERQKAENRRLAAELERAQEE 1680 Query: 633 SQ 634 ++ Sbjct: 1681 AE 1682 >gi|326790184|ref|YP_004308005.1| replicative DNA helicase [Clostridium lentocellum DSM 5427] gi|326540948|gb|ADZ82807.1| replicative DNA helicase [Clostridium lentocellum DSM 5427] Length = 442 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 49/162 (30%), Gaps = 9/162 (5%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + ++ E +++ ++I + + L + + ++++ + + Sbjct: 2 EQIQNMRIPPHSIEAEQSVIGSMIMDHDAVIVASEILRPDDFYRPDHAQIYAAIMELYTT 61 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 I +L ++G E + L + + + + Y + + Sbjct: 62 GNPIDLITIQDKLVQKGVLEQIGGL------SYIAELASSVPTSAHIKQYAKIVEEKATL 115 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEK---TAILISILHEVHIQ 627 R L + EI + + + + IL + Sbjct: 116 RRLIKASNEISAKSFEGEEPLDNIMGFAEKQIFEILQNKKTE 157 >gi|260101859|ref|ZP_05752096.1| replicative DNA helicase DnaB [Lactobacillus helveticus DSM 20075] gi|260084331|gb|EEW68451.1| replicative DNA helicase DnaB [Lactobacillus helveticus DSM 20075] gi|328463232|gb|EGF34950.1| replicative DNA helicase [Lactobacillus helveticus MTCC 5463] Length = 464 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 3/122 (2%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + S E A+L + P + + + + Q ++ + Sbjct: 6 SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIYQAMLDLSDRGDAID 65 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + L +R L + + L AT A V AL +R S+ Sbjct: 66 PLTLQDELNKRNH---LDDIGGISYVSELALATPTAAHVTYYAQIVHRKALLRRLISASQ 122 Query: 594 QK 595 + Sbjct: 123 KI 124 >gi|254724521|ref|ZP_05186304.1| recombination and DNA strand exchange inhibitor protein [Bacillus anthracis str. A1055] Length = 786 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSNRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|228941731|ref|ZP_04104278.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974655|ref|ZP_04135221.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981249|ref|ZP_04141549.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407] gi|228778449|gb|EEM26716.1| hypothetical protein bthur0002_44100 [Bacillus thuringiensis Bt407] gi|228785058|gb|EEM33071.1| hypothetical protein bthur0003_44080 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817943|gb|EEM64021.1| hypothetical protein bthur0008_43670 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942336|gb|AEA18232.1| DNA mismatch repair protein mutS [Bacillus thuringiensis serovar chinensis CT-43] Length = 786 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|73980501|ref|XP_852790.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 2 [Canis familiaris] Length = 1270 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.6 bits (93), Expect = 0.88, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 4.8, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|254237668|ref|ZP_04930991.1| hypothetical protein PACG_03753 [Pseudomonas aeruginosa C3719] gi|126169599|gb|EAZ55110.1| hypothetical protein PACG_03753 [Pseudomonas aeruginosa C3719] Length = 902 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 44/141 (31%), Gaps = 26/141 (18%) Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 L + + + + ++ L+ ++ SA A R Sbjct: 424 LLDTACARTAISLHAVPAEVDDS--RRRIEALETELAIIRRESAIGVATAERQRNAETLL 481 Query: 582 LALYKRFRLLSRQKEE--------IEKQ----------------IAQVTAKGEAEKTAIL 617 +R L ++ E +E + + + A+ + E+ L Sbjct: 482 AEERERLSALEQRWAEEKCLVDELLETRARLRAAAEAVDAGGVPLGEGEARLDEEQRQAL 541 Query: 618 ISILHEVHIQIHQIESQEAMI 638 + L E+ Q+ ++ +E +I Sbjct: 542 HARLAELQAQLSALQGEEPLI 562 >gi|237822370|ref|ZP_04598215.1| ATPase component of ABC transporter with duplicated ATPase domains [Streptococcus pneumoniae CCRI 1974M2] Length = 633 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 ++ + + + + ++ E+ Q++ + A+ + + Sbjct: 504 NRVATHVLELSENGSALYLGDYDYYIEKKVEVEM-SQIEEASTNNQAKEASPVNDYQAQK 562 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIA----QVTAKGEAEKTAILISILHEVHIQIHQI 631 + ++ L ++ L + EE+E Q Q+ +A+K L + L ++ + Sbjct: 563 ESQKEVRKLMRQIESLEAEIEELESQSQAISEQMLETNDADKLMELQAELDKISHR---- 618 Query: 632 ESQEAMIE 639 +EAM+E Sbjct: 619 -QEEAMLE 625 >gi|228987801|ref|ZP_04147910.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771849|gb|EEM20306.1| hypothetical protein bthur0001_44690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 786 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|229032198|ref|ZP_04188171.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271] gi|228728978|gb|EEL79981.1| hypothetical protein bcere0028_42400 [Bacillus cereus AH1271] Length = 786 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIQELRQLRK 599 >gi|121534994|ref|ZP_01666812.1| replicative DNA helicase [Thermosinus carboxydivorans Nor1] gi|121306407|gb|EAX47331.1| replicative DNA helicase [Thermosinus carboxydivorans Nor1] Length = 444 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 39/115 (33%), Gaps = 8/115 (6%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ + E A+L ++ + + + L + + ++ + + F + Sbjct: 4 RIPPQNVEAEQAVLGAMLIEREAISKVAEFLRPEDFYREAHRLIYQAILNLFNRNEAVDI 63 Query: 535 EEI------HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + ++L G + L V A + A IV+ + +Q + Sbjct: 64 VTVTEVLRKEEKLEAAGGISYITSLANSVPTAA--NVVYHAKIVEEKALLRQLIN 116 >gi|115378711|ref|ZP_01465859.1| adventurous gliding protein Z [Stigmatella aurantiaca DW4/3-1] gi|115364297|gb|EAU63384.1| adventurous gliding protein Z [Stigmatella aurantiaca DW4/3-1] Length = 1402 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 92/268 (34%), Gaps = 17/268 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + K + ++ + + + + + D L+ + ++ L ++ Sbjct: 216 HEKDVELQGLKMQVDDLLRRFNEAQTAMLQKEREHGATVDDLLLQKFSAEK---DLIEVV 272 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + + R ++ ++ K + + E + + Sbjct: 273 AAKEKDINVLKREVNNRDEELSRRATELDTARTEYDKLERQYGVATLEFEVREQKL--DE 330 Query: 497 ILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPE--EIHQRLC--ERGFGELLK 551 ++ ++A +R EL L + E + +RL E+ ++ Sbjct: 331 TIRGHEADIAQLRKRGEELDSTLAQTVSERDQRYAELEGEIQALQERLQQTEQERDTSVR 390 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 L+++ A A ++A I + + + AL L++Q E+E +A+ + + Sbjct: 391 ALEQRALAAEDHGAQSDAEIERL-KAERAALEAR-----LNQQIAELEADVARTIGERDQ 444 Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639 K E+ Q+++ +++ A +E Sbjct: 445 LKQEKDAQE-EELTQQLNERDAKLATLE 471 >gi|324507867|gb|ADY43326.1| Coiled-coil domain-containing protein 22 [Ascaris suum] Length = 582 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 101/289 (34%), Gaps = 19/289 (6%) Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 +L V+ + E + + + + LE N D +++ Sbjct: 290 EMRADELAQLSVQEMSCCQDGEFWEEKLKRRQNNEYASCLEELRSQESNSGVDARIKQLL 349 Query: 425 SQ-AIRDRLQQLFQKYITEHSGYGRYW-----KKNARHRDQKGPSQRLMQSSLVKGKLSK 478 + I ++L + ++ W +K+ R + L Q ++ + ++ Sbjct: 350 LEPKIVNKLNKYIEESEERMESLQNRWISVKSEKDDELRRARNEYDSLGQEKELQRETAE 409 Query: 479 KPSLREAALLLTLINHPAI--LQEQYQELADIRYDNNEL-QKLWSFLFSDFVEQKYFLPE 535 L +A + H + L+ + + + ++ + N ++++ + + +Q+ Sbjct: 410 MLRLADAIESELYLKHEHLSKLKREVERMEQVQLNRNAYTRRIFEIVANIRKQQEDIDKV 469 Query: 536 EIHQRLCERGFGELLKQLDRQ---VRDAGLWSATTEANIVDVRQGYQQA-------LALY 585 R ++ L+ +LDR V + + ++ + + ++ Sbjct: 470 LSENRHIQKELKSLVGKLDRTFTVVEEKLYRDMQRDTSMQKAYRLLVKIHEECSWVVSAT 529 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++R+ +E+ QIA K E +++ EV + + + Sbjct: 530 EACGRINREIDELNDQIAIQQQKRLDETLEKVLNDWMEVKQENDALMNT 578 >gi|300726792|ref|ZP_07060222.1| ATP-dependent chaperone ClpB [Prevotella bryantii B14] gi|299775905|gb|EFI72485.1| ATP-dependent chaperone ClpB [Prevotella bryantii B14] Length = 862 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 16/143 (11%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR---QVRDAGLW 563 I + KL + +E+++RL + + + ++ Sbjct: 388 AIDLMDEAAAKLRME-----RDSVPEELDELNRRLKQLEIEREAIKRENDTDKIAHLDKE 442 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK--------TA 615 A + D R ++ AL + + ++ E ++ + + +G E+ Sbjct: 443 IAELKDKEKDYRAKWEGERALVNKIQQDKQEIENLKYEAERAEREGNYERVAEIRYSKLQ 502 Query: 616 ILISILHEVHIQIHQIESQEAMI 638 L + + +Q+ + EAM+ Sbjct: 503 QLQQDIDNIQLQLKATQGGEAMV 525 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 51/147 (34%), Gaps = 11/147 (7%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 L+ ++Q + + + + + R+ + + +R Sbjct: 325 KALERRFQTVLVDEPTEEDAISILRGIKERYENHHKV-------RIQDDACIAAVHLSER 377 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 + D L + + + ++ + L+R+ +++E + + + + +K A Sbjct: 378 YISDRFLPDKAIDLMDEAAAKLRMERDSVPEELDELNRRLKQLEIEREAIKRENDTDKIA 437 Query: 616 ILISILHEVHIQ----IHQIESQEAMI 638 L + E+ + + E + A++ Sbjct: 438 HLDKEIAELKDKEKDYRAKWEGERALV 464 >gi|224178646|ref|XP_002191662.1| PREDICTED: dynactin 1, partial [Taeniopygia guttata] Length = 531 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 18/301 (5%) Query: 354 SRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCIN 413 +D Y + + + +D E D E +L + Sbjct: 140 REAKDALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVDSLKEKVEYLTMDLE 199 Query: 414 HIKDQKLRY--------YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQ 464 +K + Y + + ++ +L + + + + + + Sbjct: 200 ILKHEIEEKGSDGAASSYQVKQLEEQNARLKEALVRMRDLSASEKQEHVKLQKQMEKKNT 259 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSF 521 L + KL ++ E + A L +E + L + D E +++L Sbjct: 260 ELESLRQQREKLQEEVKQAEKTVDELKEQVDAALGAEEMVETLTERNLDLEEKVRELRET 319 Query: 522 LFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + + + + R E E L +VR+A + + D +Q ++ Sbjct: 320 VGDLEAMNEMNDELQENARETELELREQLDMATARVREAEKRVEAAQETVADYQQTIKKY 379 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQE 635 L + ++R+ ++ A+ + E K A + + +++ Q+E Q+ Sbjct: 380 RELTAHLQDVNRELMSQQEASAEKQQQPPPEMFDFKIKFAETKAHAKAIEMELRQMEVQQ 439 Query: 636 A 636 A Sbjct: 440 A 440 >gi|182414505|ref|YP_001819571.1| hypothetical protein Oter_2690 [Opitutus terrae PB90-1] gi|177841719|gb|ACB75971.1| protein of unknown function DUF1732 [Opitutus terrae PB90-1] Length = 290 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%) Query: 514 ELQKLWSFLFSDFVEQKYFLP---EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 L+ + + + P E + QRL + G + +R +R+ L++ + Sbjct: 160 RLRTVRGHVEAIATRAPQVAPGYREVLMQRLRQAGLELDVND-ERVLREVALFADRCDIT 218 Query: 571 IV--DVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQ 627 +R Q AL K + R+ E I +++ +V G + + E+ + Sbjct: 219 EELTRLRSHLDQFTALLKSDGEIGRKAEFILQEMGREVNTIGSKANDLAISKAVIELKNE 278 Query: 628 IHQIESQEAMIE 639 + ++ Q A +E Sbjct: 279 LERVREQIANVE 290 >gi|169335248|ref|ZP_02862441.1| hypothetical protein ANASTE_01656 [Anaerofustis stercorihominis DSM 17244] gi|169257986|gb|EDS71952.1| hypothetical protein ANASTE_01656 [Anaerofustis stercorihominis DSM 17244] Length = 457 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 61/185 (32%), Gaps = 16/185 (8%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 K+ S E +L + + + + L+ + +++ + ++ + + K Sbjct: 8 KVMPHNSEAERCVLGCTLINSETISVVREVLSVDDFYDDQHKWVYKAVLALSDRGKAVDA 67 Query: 535 EEIHQRLCERGF------GELLKQL-DRQVRDAGLWSATTEANIVDVRQGYQQAL----- 582 + L E G E L ++ D V + +R+ + L Sbjct: 68 LTLSNELKENGVFDKIGGYEFLTKIGDSVVSTNNIEHYCDIIKEKSIRRRLIRELGDVID 127 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEGF 641 Y S E +K + ++ L + + ++++I+ E +I Sbjct: 128 KCYANEDDASSMIERAQKSVYDISMDNNTTDFTKLSDAVSDAVNELNRIQKLDEKVI--- 184 Query: 642 GKMSG 646 G SG Sbjct: 185 GVPSG 189 >gi|168467064|ref|ZP_02700912.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195630539|gb|EDX49151.1| mechanosensitive ion channel family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 1108 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 19/220 (8%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 F + + ++ + + + +Q++L + K R + N P Sbjct: 18 FAATAPDAKQITQELEQAKAAKPVQPEAVEALQTALNALEERKGSLERAKQYQHVIDNFP 77 Query: 496 AI---LQEQYQELADIRYDNN---ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + L+ Q L D + L + + E ++ R + Sbjct: 78 KLSATLRAQLNNLRDEPRSVPPEMSTEALNQEILQVSSQLLDKTREAQQEQERVREIADS 137 Query: 550 LKQLDRQVRDAGLWSATTE---------ANIVDVRQGYQQALALYKRFRLLSRQKEEI-- 598 L QL +Q DA E A + + QA + + + + ++ Sbjct: 138 LSQLPQQQNDARRQLNEIERRLGAAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSA 197 Query: 599 --EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ + +EA Sbjct: 198 NNRQELARLRSELAEKQSQQLDAYLQALRNQLNSLRQREA 237 >gi|229158157|ref|ZP_04286225.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342] gi|228625319|gb|EEK82078.1| hypothetical protein bcere0010_43350 [Bacillus cereus ATCC 4342] Length = 786 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|195394009|ref|XP_002055638.1| GJ18675 [Drosophila virilis] gi|194150148|gb|EDW65839.1| GJ18675 [Drosophila virilis] Length = 1070 Score = 45.3 bits (105), Expect = 0.031, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 24/245 (9%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 E ++T +E L + + D + + + + LFQ + Sbjct: 357 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDVLFQSLCRQTEMLNES 413 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + + + + K S RE LL ++Q +E + Sbjct: 414 R--------TQINTLQELLLRDTKQAAEVSTSEREKKLL-------DLIQTSQEERETLL 458 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 EL L + E+ QR QLD + A Sbjct: 459 LKQEELNA---ELAELRQSRDAVQLEQQRQRERNALLD---SQLDAANAERKQSEAQLSL 512 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 ++ Q + L + EE+E +A+ ++ + ++ Sbjct: 513 AKEEISQRAIEISRLSTLLENARSKIEELEADLARGDKTDLSDVLDAARREKDTLEERLA 572 Query: 630 QIESQ 634 +++ Q Sbjct: 573 ELQDQ 577 >gi|327488861|gb|EGF20659.1| hypothetical protein HMPREF9395_1957 [Streptococcus sanguinis SK1058] Length = 1067 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 81/701 (11%), Positives = 188/701 (26%), Gaps = 92/701 (13%) Query: 8 IKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS 66 +++L + I ++ + R ++ D HD SF N + ++ F+ Sbjct: 4 VEELK-RLSILDVAASLGIQLKRTGSHTYSWD------EHD----SFTINAQENYFNWFA 52 Query: 67 CHVKGDHLSFLSAL------LGCSFIESVQRLAAIAGVPL-------------PVVDPKI 107 GD + + + SF E+ L + ++P Sbjct: 53 RSKGGDVFNMVQVVQEELTGQQVSFKEAKHFL-EEGNFEVFDSSKIPEKEPFKYYLEPYE 111 Query: 108 EKKEKIQTDLIRLI---EVATDFF------HHSLKNARDKRLHYYLDERGIDSHAIEMFK 158 + + ++ L + + D+F + K + + + + + Sbjct: 112 TEFTEARSYLKDVRGLSDETIDYFGEKGVLAQATKKTGNYYEPIIVFKSLNSQNEVIGAS 171 Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVI 218 L ++ Y ++ + + G + L+ +G++ Sbjct: 172 LQGIRENHYLYERGRLKQIMRASDGLTGMRIDIGQPKRLVFAEAPIDLMSYYELHKGELS 231 Query: 219 AFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVE 278 R ++ + S H + LY ++ ++ + Sbjct: 232 DV--RLVAMDGLKESTISR-----HVAELLYELGEIKAKVKPENYSTFLSQTAEVTDFFK 284 Query: 279 GYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLV 338 + A + T + + + S + D D A K + Sbjct: 285 DGKHQELITLAVDNDTAG--HTFIDRLADKGISFSSDLPSMLADRDKMDWNDALKESKVK 342 Query: 339 LCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTP 398 N + +TA + ++ P + Sbjct: 343 ALDRSQEPNNNIGGELINRNSGYLEGEPSRTAPQPEEPKAQPDFPANVQLYFNIERPKKS 402 Query: 399 DERAELEIHLK-----NCINHIKDQKLRYY--YSQAIR--------------DRLQQLFQ 437 R H +N D + Y Q + LQ F+ Sbjct: 403 SVRLRKGYHYATNKDIRFLNRYADDIQKSASWYLQELANSKVTYFYQDKEDVQMLQVNFE 462 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAI 497 K+ H + + + + LS R+ L+ L+ P I Sbjct: 463 KHHWMHLTGIAPVYSDWVDNLSEQFIEDVAAGKGNFANLSLGLGFRDKVKLMPLL--PEI 520 Query: 498 LQE---QYQELA------DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + +L+ + N + + + + P + + + Sbjct: 521 FETDSFVFDDLSSVEKMGRLDVANAIRSDDRDVMLAFRTDDRSSFPATLLK--PNQTLNV 578 Query: 549 LLKQLDRQVRDAGLWSATTEA------NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L L+++ G++ N V QQ L K+ + + KE + + Sbjct: 579 ELDALNQEKTILGVFVEKNNEIKTLSVNKEFVVDDGQQMLETLKQHQGIEILKENL--SM 636 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 + A+ E+ + E + + E E +G G Sbjct: 637 PENQAQSLRERVEQIQREDQERKQALAKKEELERDTDGDGI 677 >gi|323173246|gb|EFZ58875.1| toprim domain [Escherichia coli LT-68] Length = 347 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 16/136 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY----VD-WDRRKTNAVKGDYWACCPFHDEKTP-SFH 54 M I + ++ + Q+ V W ++ P ++ SF Sbjct: 1 MR-DIATINAIR---SVAAVAAQHAEILVPEWLPEGK-RQAAEWVCRNPTRADRHAGSFS 55 Query: 55 CNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EK 109 + G ++ F+ GD ++ + L ++ + +A G+ LP + E+ Sbjct: 56 VSLVDGCWHDFATGDSGGDLVALGAYLWNVRQTDAARIVADRLGLCLPALGKPDVMTREQ 115 Query: 110 KEKIQTDLIRLIEVAT 125 +E + + + A Sbjct: 116 REAQRVRVQAAEQEAA 131 >gi|320451243|ref|YP_004203339.1| DNA repair protein RecN [Thermus scotoductus SA-01] gi|320151412|gb|ADW22790.1| DNA repair protein RecN [Thermus scotoductus SA-01] Length = 534 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 13/247 (5%) Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + ++ + L Y +A R L +K E + + +++ K + Sbjct: 121 KRQRELLDALLPPGLLQEYGEAYRKHQALLAEKRTLEEALRAKTEREDLLRFQLKEILEA 180 Query: 466 LMQSSLVKGKLSKKPSLREAALL-------LTLINHP---AILQEQYQELADIRYDNNEL 515 + + ++ LR L L+ +LQ +EL + L Sbjct: 181 SPRPGEDQELEAEAQKLRHLETLRERSGKAYALLAEGGALDLLQAALRELRAGSRFDPAL 240 Query: 516 QKLWSFLFSDFVEQKYFLPEEIHQRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 + L L +E + E+ L G L QL+ ++ + +V Sbjct: 241 EALAKDL-EAALEGGRAVARELEDYLESLEGDPSRLAQLEERLSLLERLKRKYGPTLEEV 299 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++A K + E+E+ + + + + L ++E++ Sbjct: 300 LRYRERAEEELKALEGGEERLLELERALRVASGALYKAGERLSEARLEAARKLEKEMETE 359 Query: 635 EAMIEGF 641 + + GF Sbjct: 360 LSAL-GF 365 >gi|256824140|ref|YP_003148100.1| primary replicative DNA helicase [Kytococcus sedentarius DSM 20547] gi|256687533|gb|ACV05335.1| primary replicative DNA helicase [Kytococcus sedentarius DSM 20547] Length = 455 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 10/142 (7%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + ++ + E ++L ++ + + + + + Y + + + Sbjct: 7 EPPPDDGPGMDRMPPQDVDAERSVLGGMLLSKDAIADVLELVRGVDYYRPAHELIHDAIL 66 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 F + + L +RG L++ Q L A A GY + Sbjct: 67 DLFGRGEPADAITVADELTKRGN---LQRAGGQAYLHQLMQAVPTA----ANAGYYAEIV 119 Query: 584 LYKRFRLLSRQKEEIEKQIAQV 605 R + R+ E +I Q+ Sbjct: 120 A---ERAILRRLVEAGTRIVQM 138 >gi|224076429|ref|XP_002195240.1| PREDICTED: similar to rCG33450 [Taeniopygia guttata] Length = 2001 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 40/346 (11%), Positives = 96/346 (27%), Gaps = 18/346 (5%) Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + + + K + + +L R D + Sbjct: 1404 RRFDSELSQAHEEAQRERLQREKLSREKDVLVAEVFGLKQLLEDRDSDIAGLTQKAEALE 1463 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 E + S D + + + + + + E L I+ + + + Sbjct: 1464 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1523 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 RL+Q K + +++ + + K +L + K K+ ++ E+ L Sbjct: 1524 RLRQTHAKEVESRDEEVEEIRQSYQKK-LKQMEVQLEEEYEDKQKVLREKRELESKLSAV 1582 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE--EIHQRLCERGF-- 546 E + L L + E ++ +L E F Sbjct: 1583 SEQANQRDFETEKRLRRDLKRTKALLADAQIMLDHLKNNAPSKREITQLKNQLEESEFTC 1642 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV- 605 +K A E + Q ++ + L RQ ++++++ ++ Sbjct: 1643 AAAVKARKSMESLATRLKENMEKLTEERDQRAAAENREKEQNKRLQRQLRDVKEEMGELA 1702 Query: 606 -----------TAKGEAEKTAILISILH-EVHIQIHQIESQEAMIE 639 + + E L ++ + +I +A IE Sbjct: 1703 KKEAEASRKKHELEMDLESLEAANQSLQSDLKLAFKRIGDLQAAIE 1748 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 39/326 (11%), Positives = 100/326 (30%), Gaps = 35/326 (10%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 + L+ D D + + + ++E E++ + +LE Sbjct: 1294 RLIRAAELNGELDDDDSGGEWRLKYERAVRE--IDFTKKRLQQELEDKLEVEQQGKRQLE 1351 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 L + ++ + + RL Q G + + + Sbjct: 1352 RKLADLQADSEESQRALQQLKKKCQRLAAELQDTKLHLEGQQGRNHDLEKKQRRFDSELS 1411 Query: 466 LMQSSLVKGKLSKKPSLREAALL-------LTLINHP-----------AILQEQYQELAD 507 + +L ++ RE +L L+ L+ + Q+++ Sbjct: 1412 QAHEEAQRERLQREKLSREKDVLVAEVFGLKQLLEDRDSDIAGLTQKAEALEAELQDISS 1471 Query: 508 IRYDNNE-LQKLWSFLFSDFV-----EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + L K+ L E++ Q L + L +++R + Sbjct: 1472 QESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLR-LEMEMERLRQTHA 1530 Query: 562 LWSATTEANIVDVRQGYQ--------QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + + + ++RQ YQ Q Y+ + + R+K E+E +++ V+ + Sbjct: 1531 KEVESRDEEVEEIRQSYQKKLKQMEVQLEEEYEDKQKVLREKRELESKLSAVSEQANQRD 1590 Query: 614 TAILISILHEVHIQIHQIESQEAMIE 639 + ++ + + M++ Sbjct: 1591 FETEKRLRRDLKRTKALLADAQIMLD 1616 >gi|170767086|ref|ZP_02901539.1| conserved hypothetical protein [Escherichia albertii TW07627] gi|170124524|gb|EDS93455.1| conserved hypothetical protein [Escherichia albertii TW07627] Length = 209 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 16/136 (11%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQY----VD-WDRRKTNAVKGDYWACCPFHDEKTP-SFH 54 M I + ++ + Q+ V W ++ P ++ SF Sbjct: 1 MR-DIATINAIR---SVAAVAAQHAEILVPEWLPEGK-RQAAEWVCRNPTRADRHAGSFS 55 Query: 55 CNDSKGFYYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKI----EK 109 + G ++ F+ GD ++ + L ++ + +A G+ LP + E+ Sbjct: 56 VSLVDGCWHDFATGDSGGDLVALGAYLWNVRQTDAARIVADRLGLCLPALGKPDVMTREQ 115 Query: 110 KEKIQTDLIRLIEVAT 125 +E + + + A Sbjct: 116 REAQRVRVQAAEQEAA 131 >gi|300796033|ref|NP_001179208.1| coiled-coil domain-containing protein 88B [Bos taurus] gi|297492134|ref|XP_002699376.1| PREDICTED: coiled-coil domain containing 88B [Bos taurus] gi|296471497|gb|DAA13612.1| coiled-coil domain containing 88B [Bos taurus] Length = 1463 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 79/283 (27%), Gaps = 26/283 (9%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 I A +L + + + + + + +N ++ Sbjct: 965 MRLIEVERSNATLAAEKAALQGQLQHLEGQLGSLQGRAQELLLQSQRAQENSSRLQAEKS 1024 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + Q + RL L ++ + +L + Sbjct: 1025 VLETQGQELHRRLGLLEEEVQAARRSQEETRGQQQALLRDHEALAQLQR----------- 1073 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +EA L L H + + + + ELQ L + + + + Sbjct: 1074 --RQEAELEGLLARHRDL----KANMRALELAHRELQGRHEQLQAQKANVEAQEVALLAE 1127 Query: 540 R-------LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 R +RG E L++L + A + A +++ + R L Sbjct: 1128 RERLVQDGHRQRGLEEELRRLQSEHDRAQMLLAEVSRERGELQGERGELRGRLARLELER 1187 Query: 593 RQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q E +++ + + + + E+ ++ + +E Sbjct: 1188 AQLEAQSQRLRESNQQLDLSACRLTTQ--CELLTELRSAQEEE 1228 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 74/262 (28%), Gaps = 23/262 (8%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 E +E + ++ +R A +RLQ ++ E + Sbjct: 834 HVLEAEGRRHLEEAETQRRERQALQEELEKAVVRGRELGARLERLQNELERAALERQEFL 893 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL-- 505 R + + + K LR+ AL L + + + Sbjct: 894 REQEFQHQRYQGLEQRLEAELQAAATSKEEALTELRKRALQL----EGELFKLRQGAAGL 949 Query: 506 ---ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGL 562 E Q + + +L L L + ++ L Sbjct: 950 GPQEQTELKGTEAQSMRLIEVERSNATLAAEKAALQGQLQH--LEGQLGSLQGRAQELLL 1007 Query: 563 WSATTEANIVDVRQG----YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 S + N ++ Q L++R LL + + + +Q +G+ + Sbjct: 1008 QSQRAQENSSRLQAEKSVLETQGQELHRRLGLLEEEVQAARR--SQEETRGQQQALLRDH 1065 Query: 619 SILHEVHIQIHQIESQEAMIEG 640 L ++ + QEA +EG Sbjct: 1066 EALAQLQRR------QEAELEG 1081 >gi|319757757|gb|ADV69699.1| hypothetical protein SSUJS14_0608 [Streptococcus suis JS14] Length = 366 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 P HD SF + FS ++GD + F+ + G +F E+V L Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78 >gi|301606697|ref|XP_002932973.1| PREDICTED: centrosomal protein of 164 kDa-like [Xenopus (Silurana) tropicalis] Length = 1379 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 43/329 (13%), Positives = 110/329 (33%), Gaps = 51/329 (15%) Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL- 420 + + I + + +E + E K ++ KD L Sbjct: 635 LRMKELQEERKYTIERFETSQEEIILQEKSAIKEKMKADIEEAIKEEKILLDKEKDATLH 694 Query: 421 --RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 R SQ L+ L +++ E K+ + + + RL + + Sbjct: 695 ELREKLSQETNKALEDLEKQHAEELENLRAEVKQKHQKTVSELQNSRLQVHEQGEVQTFS 754 Query: 479 KPSLREAALLLTL---------INHP--AILQEQYQELADIRYDNN-ELQKLWSFLFSDF 526 + +L +L + + + ++ ++L ++ D+ EL+++ L + Sbjct: 755 ELNLSNKKMLQLMDFEKEMSDLLQEKRLEVQRDHERKLERLKEDHQLELERVRDQLEDEE 814 Query: 527 VEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ- 579 Q+ + E + + L E+ ++L R+ + E + D+ Q + Sbjct: 815 RTQRSRMLERLQEELEKIRQLHEQELETECRELQRKQEERRNSYQEKENKLQDMEQNLEL 874 Query: 580 ---------------------QALALYKRFRLLSRQKEEIEK-----QIAQ---VTAKGE 610 + +L ++ + LSR+ EEI+ ++ + K Sbjct: 875 RRKQLLMKTGQLDSQEENIRQRRTSLEEKEKELSRKTEEIKSSTLNLKMQEDLVTEQKLL 934 Query: 611 AEKTAILISILHEVHIQIHQIESQEAMIE 639 + L + + ++E++ A+++ Sbjct: 935 QDIIQKSQHELEKTQNKRTELEAEVALLQ 963 Score = 41.0 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 33/283 (11%), Positives = 97/283 (34%), Gaps = 15/283 (5%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ K E+L + + N L + +++ +++ Sbjct: 555 LKDKHKQRLEELRETLRKEEEKKSLEMRQGHENNLRALEELLAKQTQEEETKMREVQMQR 614 Query: 423 YYSQAIRDRLQQLFQ----KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++Q + + + R + Q+ + + K K Sbjct: 615 LVRLEKELEIEQEEEQKKLRLRMKELQEERKYTIERFETSQEEIILQEKSAIKEKMKADI 674 Query: 479 KPSLREAALLL-----TLINH--PAILQEQYQELADIRYDN-NELQKLWSFLFSDFVEQK 530 + +++E +LL ++ + QE + L D+ + EL+ L + + ++ Sbjct: 675 EEAIKEEKILLDKEKDATLHELREKLSQETNKALEDLEKQHAEELENLRAEVKQK-HQKT 733 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL 590 + ++ E+G + +L+ + + +++ + ++R Sbjct: 734 VSELQNSRLQVHEQGEVQTFSELNLSNKKMLQLMDFEKEMSDLLQEKRLEVQRDHERK-- 791 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIES 633 L R KE+ + ++ +V + E E+ +L + ++ +I Sbjct: 792 LERLKEDHQLELERVRDQLEDEERTQRSRMLERLQEELEKIRQ 834 >gi|237843707|ref|XP_002371151.1| hypothetical protein TGME49_097210 [Toxoplasma gondii ME49] gi|211968815|gb|EEB04011.1| hypothetical protein TGME49_097210 [Toxoplasma gondii ME49] Length = 1429 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 38/94 (40%) Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + L++ R+ A EA + + ++A+ +R ++ + E+Q Sbjct: 244 QTERRRLVEAQARRDAARDAEFARREAQLEARLEALREAVKEREREMEKLVEENQRERQK 303 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 A +GE E+ L + L E+ + + E+ Sbjct: 304 ADAETQGERERVEALEARLRELKREREVSQDLES 337 >gi|206969500|ref|ZP_03230454.1| MutS2 family protein [Bacillus cereus AH1134] gi|229072054|ref|ZP_04205263.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185] gi|229081805|ref|ZP_04214297.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2] gi|229180871|ref|ZP_04308206.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W] gi|229192752|ref|ZP_04319710.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876] gi|206735188|gb|EDZ52356.1| MutS2 family protein [Bacillus cereus AH1134] gi|228590591|gb|EEK48452.1| hypothetical protein bcere0002_44030 [Bacillus cereus ATCC 10876] gi|228602428|gb|EEK59914.1| hypothetical protein bcere0005_42150 [Bacillus cereus 172560W] gi|228701393|gb|EEL53887.1| hypothetical protein bcere0023_44330 [Bacillus cereus Rock4-2] gi|228710988|gb|EEL62954.1| hypothetical protein bcere0025_42200 [Bacillus cereus F65185] Length = 786 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|156060197|ref|XP_001596021.1| hypothetical protein SS1G_02237 [Sclerotinia sclerotiorum 1980] gi|154699645|gb|EDN99383.1| hypothetical protein SS1G_02237 [Sclerotinia sclerotiorum 1980 UF-70] Length = 1669 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 30/256 (11%), Positives = 92/256 (35%), Gaps = 28/256 (10%) Query: 379 LPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQK 438 P +D + + ++D + + ++ I ++L+ + Sbjct: 687 KPALDFDSLYHVVMECQRQQGIIQSQVNSISDLNTKLQDAEAQLRDTRVINEKLEAKKDE 746 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 + +H ++ Q+ ++ + K S + Sbjct: 747 LSKRVERLNDLSNRYRQHINEVVICQKSLRQDSQEMKKSMGNLK---------LVSTEES 797 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 +E +++ I + +++++ + ++L + F L +++ R Sbjct: 798 EEIKAQISRITELSEQIKQIRR-------------DKTQQEKLMDAEFKALGEKIVELQR 844 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + A ++N+V+VR+ Q L +F+ L + E++++ A++ A ++ Sbjct: 845 ENDRLKAVNDSNMVEVRKDKTQQ-DLNAKFKALGEKIVELQRENARLKALDDSNMV---- 899 Query: 619 SILHEVHIQIHQIESQ 634 L + ++I +++ Q Sbjct: 900 -ELQQERLRIEELQKQ 914 >gi|323465576|gb|ADX69263.1| Replicative DNA helicase DnaB [Lactobacillus helveticus H10] Length = 464 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 3/122 (2%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 + S E A+L + P + + + + Q ++ + Sbjct: 6 SQQIPHDSDAEKAVLGAIFIDPEAIADASAVVQPEDFYERANQIIYQAMLDLSDRGDAID 65 Query: 534 PEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR 593 P + L + L + + L AT A V AL +R S+ Sbjct: 66 PLTLQDELNK---RNQLDDIGGISYVSELALATPTAAHVTYYAQIVHRKALLRRLISASQ 122 Query: 594 QK 595 + Sbjct: 123 KI 124 >gi|189190000|ref|XP_001931339.1| myosin-2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187972945|gb|EDU40444.1| myosin-2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 1593 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 37/288 (12%), Positives = 91/288 (31%), Gaps = 18/288 (6%) Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR-YYY 424 + A + + + E T +R + I++ ++ Sbjct: 805 EMREAVIFVQSLARGYMTREKTEEARQVRAATTIQRVWRGSKDRKRFLVIRNSLIKFEAI 864 Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ R L ++ R W+K R K ++ V+ + + RE Sbjct: 865 AKGFLLRKNLLDKRLGDAARMIQRNWRKQRYIRAYKKEINDII---TVQKLWRGRKARRE 921 Query: 485 AALLLTLINHPAILQEQYQELADIRYDN-----NELQKLWSFLFSDFVEQKYFLPEEIHQ 539 +L + + + N + + L S + + + K + Sbjct: 922 YKVLRAESRDLKNISYKLENKVVELTQNLGTMREQNKSLKSQVENYENQIKSYKE----- 976 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 R K+L + AG+ +A + ++ + R L +++E+ Sbjct: 977 --RSRTLENRQKELQAEANQAGITAAKLSQMEDEYKKLQTSYEESNAKMRHLQEEEKELR 1034 Query: 600 KQIAQVTAKGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGKMS 645 + + T E K I+ + Q+ +++ Q +++ G +S Sbjct: 1035 ATLKRTTEDLEQSKRKSNITETEKVSLRQQLAELQEQVEIMKRAGPIS 1082 >gi|115384276|ref|XP_001208685.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624] gi|114196377|gb|EAU38077.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624] Length = 1341 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 26/229 (11%), Positives = 70/229 (30%), Gaps = 22/229 (9%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ +++ + +K + K A +G Q+L + + + Sbjct: 291 IDELKTKMRVMEKKRAEDRDKIKNLEKLQAERDKFEGIIQKLQAKYQPQQMEIGELRKK- 349 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + E+ + L E+ L + + + E + ++ E Sbjct: 350 -------LKEYESRAEEIERLQAEHESLMEMATLDREMAEETADAFKHECEALRMKVEEL 402 Query: 545 GFG--------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL-YKRFRLLSRQK 595 E L + + E +R+ + + ++ L Q Sbjct: 403 QLEVEVLRDENEELSHVMSPEEKSSQGWLQMEKTNERLREALIRLRDMTQQQENELKDQI 462 Query: 596 EEIEKQIA-----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +E+++ + + + EK + + + ++ Q+ E MIE Sbjct: 463 KELQQDLEDYAAIRSQYESTKEKLLVSENNVEDLKQQLETALGAEEMIE 511 >gi|149036805|gb|EDL91423.1| rCG56136, isoform CRA_b [Rattus norvegicus] Length = 829 Score = 45.3 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 66/175 (37%), Gaps = 7/175 (4%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 G + Q KL+ +E L ++ + ++ A + ++ ++L Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAAL---DSAYRELTD 669 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 ++ + + + + + EL L++ +A T + D+R Q+ Sbjct: 670 LHKANAAKDSEVQEAALRREMKAK--EELSGALEKAQEEARQQQETLALQVGDLRLALQR 727 Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A A ++ L + E+++++ + + E + + S + QI +++ Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781 >gi|311254317|ref|XP_001927973.2| PREDICTED: cingulin-like [Sus scrofa] Length = 1196 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 11/221 (4%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL--LLTL 491 Q+ + G G K +D + L + K ++ ++ LRE L L Sbjct: 440 QVMELQDKLKRGQGPEPAKEMLMKDLLETRELLEEVVEGKQRIEEQLRLRERELTALKGA 499 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK 551 + + + + + ++L + + E ++ L + Sbjct: 500 LKE-EVASRDQEVEQVRQQYQRDAEQLRRSMQDATQDHAALEAE---RQKMSALVRGLQR 555 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ----KEEIEKQIAQVTA 607 +L+ + G W + N ++R Q+ L L + + E +++++ Q A Sbjct: 556 ELEETSEETGHWQNMFQKNKEELRATKQELLQLRMEKEEMEEELGEKIEVLQRELGQARA 615 Query: 608 -KGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 G+ + L L + ++ +++++ E GK R Sbjct: 616 GAGDTRQVEELKKELRQTQEELKDLQAEQQSQEVAGKHRER 656 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 95/300 (31%), Gaps = 31/300 (10%) Query: 358 DPDSFIRCYGKTAFEKLIVESL------PLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 D ++ E ++ W E E S + E + + Sbjct: 856 DDSKQALQELQSQLEDYKEKARREVADAQRQAKEWASEAEKTSGGLSRLQDETQRLRQAL 915 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSL 471 D+ + + RLQ L Q+ + ++ ++ + + Sbjct: 916 QASQADRDTARLDKELLAQRLQGLEQEAENKKRSQDDKSRQLKSLEEKVSRLEAELDEER 975 Query: 472 VKGKLSKKPSLREA----ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFV 527 +L R L L+ + Q+ + + N +L+ Sbjct: 976 STVELLTDRMNRGRDQVDQLRTELMQERSARQDLECDKISLERQNKDLKS------RLAS 1029 Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA---- 583 + + P +L EL ++L + R+ + +T V++ Q Sbjct: 1030 SEGFQKPSASLSQLESLN-RELQERLQAEEREKTVLQSTNRKLERRVKELSIQIDDERQH 1088 Query: 584 -------LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH-QIESQE 635 L R + L RQ +E E++I ++ G +K + HEV+ Q+ +I++ E Sbjct: 1089 VNDQKDQLSLRVKALKRQVDEAEEEIERLD--GLRKKAQRELEEQHEVNEQLQARIKALE 1146 >gi|306824798|ref|ZP_07458142.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433009|gb|EFM35981.1| conserved hypothetical protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 1617 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 13/89 (14%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 R+ ++ I ++ + ++ + + + HD S + K + Sbjct: 13 RERVEFARSR-DILDVANELQMELVQSGRDYRWKE-------HD----SLVISPDKNLWK 60 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92 FS + GD +S + + F +SV L Sbjct: 61 WFSRNTGGDAISLVETIKEVDFNQSVDFL 89 >gi|297670901|ref|XP_002813592.1| PREDICTED: TATA element modulatory factor [Pongo abelii] Length = 1006 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 81/273 (29%), Gaps = 10/273 (3%) Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAI 428 + + + L E E+ +LE ++ K++ L + Sbjct: 425 DKVAEQCEPAESQPEAL--SEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFDNL 482 Query: 429 RDRLQ---QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 ++ + + + + + + + + + + K L + Sbjct: 483 KEXVFCKCEXSSSISSLKDEFTQRIAEAEKESSTSCKERDAAKKEIKNIKEELATRLNSS 542 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L ++ +E A + L + L E L Sbjct: 543 ETADLLKEKDEQIRGLMEEGAKLNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSRE 602 Query: 545 --GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ-ALALYKRFRLLSRQKEEIEKQ 601 EL L++ +A T + D+R Q+ A ++ L + E++++ Sbjct: 603 MKAKEELSAALEKAQEEARQQQETLAIQVGDLRLALQRTEQAAARKEDYLRHEISELQQR 662 Query: 602 IAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + + E + + S + QI +++ Sbjct: 663 LQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 694 >gi|167997891|ref|XP_001751652.1| predicted protein [Physcomitrella patens subsp. patens] gi|162697633|gb|EDQ83969.1| predicted protein [Physcomitrella patens subsp. patens] Length = 691 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 21/212 (9%) Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L F + + + R D + S + + + KK S E A Sbjct: 32 LLVLTFWRDLDLEKWRAELDDQGLRIGDNQENSLKNRRKLAESTRDFKKASNEEKA---- 87 Query: 491 LINHPAILQEQYQELADI----RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 PA+L+ +E+ ++ ++ N ++ L+ Sbjct: 88 -KAFPALLKGYQEEVDNLTKRAKFGENAFLNVYQKLYEAPDPVPALS--------SGAEL 138 Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 L +LD R + +R L +R RLL +Q EE K+I ++ Sbjct: 139 ATRLAELDSDYRKMKQELEEYRSEAAHLRNQQATVRRLEERNRLLEQQMEEKVKEIVEMK 198 Query: 607 AKGEAEKTAILISILHE----VHIQIHQIESQ 634 + AE+ I I+ E + Q+ + Sbjct: 199 QRSLAEENQKNIEIIREREAFLQNQLRAAKES 230 >gi|157126537|ref|XP_001660917.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti] gi|108873223|gb|EAT37448.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti] Length = 1173 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 70/220 (31%), Gaps = 16/220 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGK--LSKKPSLREAAL 487 RL + Q+ E Y K+N K R + + + +E + Sbjct: 360 RRLNAIIQELRLELLAYSAGGKENVPGAGNKSGIIRSNSDHHLVNGFIPTGEAIRQEKEM 419 Query: 488 LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + + LQ Q++A+ + +K+ + + + ++ Q + + Sbjct: 420 MDKIRTLQQQLQSALQDMANDQLRTLTAEKIVEEIEALLAQSPDSDLKQGIQAILDGYKE 479 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ--- 604 E L + E Q+ + + R L+R+ E+++++ + Sbjct: 480 ETASIRTESQVSDSLLHSAAEEFQNRSDTHTQKQMKIRDELRQLNREL-ELKEELHRKCL 538 Query: 605 ----------VTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + ++ + E+ QI ++ Q Sbjct: 539 GNISNLTFTVDDSSSSNDRLEEYEDKIKELEKQIEELNDQ 578 >gi|239814845|ref|YP_002943755.1| ATP-dependent chaperone ClpB [Variovorax paradoxus S110] gi|239801422|gb|ACS18489.1| ATP-dependent chaperone ClpB [Variovorax paradoxus S110] Length = 873 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 2/203 (0%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++KYI + + R ++K + +++ K ++ + + A++ Sbjct: 317 YRKYIEKDAALERRFQKIIVGEPSVEATIAILRGLQEKYEVHHGVQITDPAIVAAAELSD 376 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL-D 554 + +++ I + K+ + S I ++ + Sbjct: 377 RYITDRFLPDKAIDLIDEAAAKIKIEMDSKPEVMDRLDRRLIQLQIEREAVRREKDEASQ 436 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 ++ A + I D + +Q A + + ++I+ +I + KG+ K Sbjct: 437 KRFGLIEDEIARLQKEIADYDEIWQAEKAQAQGSAKIREDIDKIKFEIEEWKRKGDFNKL 496 Query: 615 AIL-ISILHEVHIQIHQIESQEA 636 A L L + ++ + E EA Sbjct: 497 AELQYGQLPALEKRLREAEESEA 519 >gi|89094702|ref|ZP_01167638.1| hypothetical protein MED92_02424 [Oceanospirillum sp. MED92] gi|89081048|gb|EAR60284.1| hypothetical protein MED92_02424 [Oceanospirillum sp. MED92] Length = 1067 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 70/244 (28%), Gaps = 19/244 (7%) Query: 411 CINHIKDQKLRYYYSQAIRDRLQQ--LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 + I ++ + Q I L++ L Q I K + + + Sbjct: 41 VNSSIPSEQEKRAIQQKIISALKEQELLQNKIGSLQSELELQPKVLQAIETRLSESTSPL 100 Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD--- 525 + + RE ++ E Q + Q + L + Sbjct: 101 PDIAYEITLAELEKRETQTNARVLELNRTQAEYRQTASQAE---ERQQTIREQLANLKFV 157 Query: 526 --------FVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT-TEANIVDVRQ 576 F E + E + +L+ V A + + Sbjct: 158 DFSDDKPQFAENSDLATQLQSASFAEYNLRQQALELELLVLPKRAEIAKLNGQLLERELK 217 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIESQE 635 Q L F+ + RQ+ E E + ++ EA+ I +L + + Q+ Q+ + Sbjct: 218 LQNQYLNSLGEFKQV-RQRAEAELALRELEKSAEADSEVQAIQLLRKENQQLSQQLRALL 276 Query: 636 AMIE 639 IE Sbjct: 277 VDIE 280 >gi|310822360|ref|YP_003954718.1| adventurous-gliding motility protein Z [Stigmatella aurantiaca DW4/3-1] gi|309395432|gb|ADO72891.1| Adventurous-gliding motility protein Z [Stigmatella aurantiaca DW4/3-1] Length = 1443 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 92/268 (34%), Gaps = 17/268 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + K + ++ + + + + + D L+ + ++ L ++ Sbjct: 257 HEKDVELQGLKMQVDDLLRRFNEAQTAMLQKEREHGATVDDLLLQKFSAEK---DLIEVV 313 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 + + R ++ ++ K + + E + + Sbjct: 314 AAKEKDINVLKREVNNRDEELSRRATELDTARTEYDKLERQYGVATLEFEVREQKL--DE 371 Query: 497 ILQEQYQELADIRYDNNELQ-KLWSFLFSDFVEQKYFLPE--EIHQRLC--ERGFGELLK 551 ++ ++A +R EL L + E + +RL E+ ++ Sbjct: 372 TIRGHEADIAQLRKRGEELDSTLAQTVSERDQRYAELEGEIQALQERLQQTEQERDTSVR 431 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 L+++ A A ++A I + + + AL L++Q E+E +A+ + + Sbjct: 432 ALEQRALAAEDHGAQSDAEIERL-KAERAALEAR-----LNQQIAELEADVARTIGERDQ 485 Query: 612 EKTAILISILHEVHIQIHQIESQEAMIE 639 K E+ Q+++ +++ A +E Sbjct: 486 LKQEKDAQE-EELTQQLNERDAKLATLE 512 >gi|291085970|ref|ZP_06354520.2| putative periplasmic binding protein [Citrobacter youngae ATCC 29220] gi|291069026|gb|EFE07135.1| putative periplasmic binding protein [Citrobacter youngae ATCC 29220] Length = 1096 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 71/218 (32%), Gaps = 18/218 (8%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 + + K + + + + ++L + K S + + + ++ N Sbjct: 11 AATAPDAKQLTQELEQAKAAKPAQPETVEALQSALNALEERKGSLERATQYQQVID---N 67 Query: 494 HPAILQEQYQELADIR---------YDNNEL-QKLWS----FLFSDFVEQKYFLPE-EIH 538 P + +L+++R + L Q++ L Q+ EI Sbjct: 68 FPKLSATLRAQLSNLRDEPRNVPTGLTTDALNQEILQVSSQLLEKSRQAQQEQDRAREIA 127 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 L + + + + + +A Q L L++ Sbjct: 128 DSLSQLPQQQTDARRQLNELERRIGTANANPAQNQAMQAESAKLKALVDELELAQLSANN 187 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 +++A++ ++ +++ L + L + Q++ +EA Sbjct: 188 RQELARMRSELAEKQSQQLDAYLQALRNQLNSQRQREA 225 >gi|261327693|emb|CBH10670.1| flagellar attachment zone protein, putative [Trypanosoma brucei gambiense DAL972] Length = 1748 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 75/222 (33%), Gaps = 15/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK---------GK 475 + + ++L+ L +E + + R Q+ S + + Sbjct: 632 LRDLVEKLRDLADNQASELELLKLQKTQANQIRAQRNLSTFRGDDTAEPVYCVTLDELRE 691 Query: 476 LSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE 535 ++ E L +L Q LA++ + E +KL + E + Sbjct: 692 QTEHCDQVERELERQREQCQNLLNAQDDLLAELSGVSEEKEKLEAECERLEAELRQMEE- 750 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 RL E+G E+ ++L+ + + E + + R+ Sbjct: 751 --KSRLSEQGLSEMTQRLEEKQAEIEGLLENLEQLDEQLEALRAAEKSAQAHIEARDREI 808 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI-ESQEA 636 ++++++ + KT L+ L + + + ++ + QEA Sbjct: 809 SDLQQRLE--GEIDDHIKTTALLEELRKHYNNLEELFDKQEA 848 Score = 39.1 bits (89), Expect = 2.5, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 8/205 (3%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + A ++ L + K + E L Sbjct: 1092 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1151 Query: 490 TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 ++ E + ++ E +KL L E + E L +L Sbjct: 1152 EALDLK--AAENEKLAEELDLKAAENEKLAEELELKVAENEKLAEEL---ELKAAENEKL 1206 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 ++L+ + + + E + + + L L + EE+E + A+ Sbjct: 1207 AEELELKAAENEKLAEELELKAAE-NEKLAEELELKVAEN--EKLAEELELKAAENEKLA 1263 Query: 610 EAEKTAILISILHEVHIQIHQIESQ 634 E + + +++ E++ Sbjct: 1264 EELELKAAENEKLAEELELKAAENE 1288 Score = 37.9 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + + E+ + A ++ L + K + E L Sbjct: 1176 EKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLA 1235 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + + E + ++ E +KL L E + E L + Sbjct: 1236 ---EELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEEL---ELKAAENEK 1289 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L ++L+ +V + + E + + + L L + + EE+E + A+ Sbjct: 1290 LAEELELKVAENEKLAEELELKAAE-NEKLAEELEL--KAAENEKLAEELELKAAENEKL 1346 Query: 609 GEAEKTAILISILHEVHIQIHQIESQ 634 E + + +++ E++ Sbjct: 1347 AEELELKAAENEKLAEELELKAAENE 1372 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 85/272 (31%), Gaps = 14/272 (5%) Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYS-QAIRDRLQQLF 436 S+ L + N+ D + + ++ D+ + Q++ ++L + Sbjct: 896 SVTLDEYNDHMHRSNQFQQENDLLRQQLQQANDERENLHDRLEQLMAENQSLSEQLHNMH 955 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 ++ E +N R ++ + +++ S+ + L+ Sbjct: 956 EELEREERDRSGVTLQNERLAEEIQRKTAENEQLVLENNKSRSDIRNLNVQVQRLMEELE 1015 Query: 497 I-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLK---- 551 + E + ++ E +KL L E + + E L+ Sbjct: 1016 LKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEALDLKAAENEKLAEELELKVA 1075 Query: 552 QLDRQVRDAGLWSATTEANIVDVR--QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 + ++ + L A E ++ + LA + +K E ++ + Sbjct: 1076 ENEKLAEELELKVAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKAAENEK 1135 Query: 610 EAEKTA------ILISILHEVHIQIHQIESQE 635 AE+ ++ ++ ++ ++E Sbjct: 1136 LAEELELKAAENEKLAEALDLKAAENEKLAEE 1167 Score = 37.6 bits (85), Expect = 6.2, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 66/216 (30%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ + A ++ L + K + E L Sbjct: 1204 EKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLA 1263 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + E + ++ E +KL L E + E + E Sbjct: 1264 ---EELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAEELELKAAENEKLAE 1320 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L +A E ++ + + L L + + EE+ Sbjct: 1321 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELEL--KAAENEKLAEEL 1378 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + +++ E++ Sbjct: 1379 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1414 Score = 37.2 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 16/216 (7%) Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLL 489 ++L + + E+ A ++ L + K + + E L Sbjct: 1134 EKLAEELELKAAENEKLAEALDLKAAENEKLAEELDLKAAENEKLAEELELKVAENEKLA 1193 Query: 490 TLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + E + ++ E +KL L E + E + E Sbjct: 1194 ---EELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAENEKLAE 1250 Query: 549 LLK----QLDRQVRDAGLWSATTEANIVDVR------QGYQQALALYKRFRLLSRQKEEI 598 L+ + ++ + L +A E ++ + + L L + EE+ Sbjct: 1251 ELELKAAENEKLAEELELKAAENEKLAEELELKAAENEKLAEELELKVAEN--EKLAEEL 1308 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 E + A+ E + + +++ E++ Sbjct: 1309 ELKAAENEKLAEELELKAAENEKLAEELELKAAENE 1344 >gi|295667794|ref|XP_002794446.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] gi|226285862|gb|EEH41428.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb01] Length = 2486 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 43/419 (10%), Positives = 120/419 (28%), Gaps = 25/419 (5%) Query: 234 LNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQN 293 N+P+ + L+ L + L + S + Sbjct: 1450 FNTPQPEMEETSGELFGGGPRLIPSYAIRSNAPSPSPQGSRPLFANVPKIDSAFGGPAHH 1509 Query: 294 VVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNF-VL 352 ++S +A+++ + +P I D DD + + Sbjct: 1510 ILSPQRSAISDSNSPICHLNNPEIEHVSDWDDAISVGEDAKLRQRSRFFDRHVNDIVGGI 1569 Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWK--RETENRSFNTPDERAELEIHLKN 410 + DP + + + + + + R ++ + + E + Sbjct: 1570 IEDRLDPLERALGVIQQSIDIIAANQVLNQNHNQNTRRSASAGVEHSDADDEDDEEDDEA 1629 Query: 411 CINHIKDQKLRYY-----YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 + R QA+ + L I + Sbjct: 1630 LRYRSRSPLNRRVRHVNSIKQAVAEAL-ASQVPRIEVPVPPPAPVIDLTEIHVALAELKT 1688 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY-----QELADIRYDNNELQKLWS 520 L+ V+ L++ ++ + HP + + ++ LQ + Sbjct: 1689 LVAPKPVEPVPEPPIDLKQ-VIIDAISEHPRLNAPVESVSHTDNIEALKMQVEGLQTMLR 1747 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ-GYQ 579 + + E++Y + + + LL+ + TE D+++ Sbjct: 1748 -VADERAEKEYQIRRDAQDSV--AQCQRLLRIAEEDAAYHRELVMKTEEAFRDLKERTIP 1804 Query: 580 QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH----EVHIQIHQIESQ 634 + + ++ RLL Q+E ++ +++++ K + + + Q+ +++ + Sbjct: 1805 ETERIERQSRLLQEQQESLQLTLSELSGKNIS--LEETLDEYRVSADQWRSQVERVKKE 1861 >gi|219125089|ref|XP_002182821.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405615|gb|EEC45557.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 887 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 44/253 (17%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLS- 477 Y +RL+ + + + + A D + L++ L +G+L Sbjct: 253 YRGEFEERLRAVLDEVKRAQGKMLLFVDEIHLVLGAGKSDGAMDAANLLKPMLARGELRM 312 Query: 478 -------------KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 +K + E ++N P++L L + + + S Sbjct: 313 IGATTLEEYRKHIEKDAAFERRFQQVIVNEPSVLDTI-SMLRGLSDRYETHHGVR-IMDS 370 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 V I R +L+ + + R ++ + Q +Q L L Sbjct: 371 ALVTAAQLSDRYITHRFNPDKSIDLIDEAAARKRTTL------DSRPERIDQLERQILQL 424 Query: 585 ---------------YKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 +R + + +++++A + AK +A++ L E+ ++ Sbjct: 425 EIESTALGREKDKESKRRRTAIQEEIANLKEELAPLNAKWQADRGRA--EELKEIKEKLT 482 Query: 630 QIESQEAMIEGFG 642 +E++ A E G Sbjct: 483 TLEAKAASAERTG 495 >gi|198474044|ref|XP_002132614.1| GA25794 [Drosophila pseudoobscura pseudoobscura] gi|198138224|gb|EDY70016.1| GA25794 [Drosophila pseudoobscura pseudoobscura] Length = 2166 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1776 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1835 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1836 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1888 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550 + + + ++ L + ++L ELL Sbjct: 1889 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1948 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607 + A ++R A K + L +Q +E++ ++ + A Sbjct: 1949 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 2008 Query: 608 KGEAEKTAILISILHEVHIQI 628 KG + L + E+ ++ Sbjct: 2009 KGGKKAIQKLEQRVRELENEL 2029 >gi|195386602|ref|XP_002051993.1| myosin heavy chain [Drosophila virilis] gi|194148450|gb|EDW64148.1| myosin heavy chain [Drosophila virilis] Length = 2153 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550 + + + ++ L + ++L ELL Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607 + A ++R A K + L +Q +E++ ++ + A Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995 Query: 608 KGEAEKTAILISILHEVHIQI 628 KG + L + E+ ++ Sbjct: 1996 KGGKKAIQKLEQRVRELENEL 2016 >gi|269926663|ref|YP_003323286.1| RNA binding metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] gi|269790323|gb|ACZ42464.1| RNA binding metal dependent phosphohydrolase [Thermobaculum terrenum ATCC BAA-798] Length = 509 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA- 581 + E + R+ E + + L +A EA + + R +A Sbjct: 25 LRFISNNQIREAERLRDRISEEAATKQKQILLEAQAEAIRIRNEAEAEVKERRADLARAE 84 Query: 582 LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH-------IQIHQIESQ 634 L ++ L R+ E +E++ ++ A+ +++ + + L ++ Q ++ + Sbjct: 85 RRLQQKEENLDRKIEALERREQKIQAR--DQESERIRNELEKIKQEQMLVLQQRAEMTKE 142 Query: 635 EAMIE 639 EA E Sbjct: 143 EAKAE 147 >gi|217973461|ref|YP_002358212.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS223] gi|217498596|gb|ACK46789.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS223] Length = 1274 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 69/527 (13%), Positives = 150/527 (28%), Gaps = 30/527 (5%) Query: 134 NARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLID 191 +L+ + + I++++L + R + E L Sbjct: 125 TTNSADTSEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPESLTKP 184 Query: 192 GDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNF 251 + LI R Q R + + LN+P+T L + L+ F Sbjct: 185 LNEDQRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVF 242 Query: 252 FGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLW 311 + Q I+L +N + QL LW Sbjct: 243 GISSMAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELW 302 Query: 312 KLSPRI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKT 369 + + L + G ++L H G+ V DP S Sbjct: 303 EDKLEVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGV 362 Query: 370 AFEKLIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQ 426 ++ L +++L D + ENR D+++ + + + + L + + Sbjct: 363 QYDILEMQTLDRVLGPDAELYQNVENRRLLKRDDQSIRVKSCHSPLREV--ETLHDHLLE 420 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + + + + Y K + + +G + P + Sbjct: 421 LLSNHADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFL 480 Query: 487 LLLTL------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEE 536 LL + + + E L + D++ELQ + +L +++ L + Sbjct: 481 NLLGINQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRDEQSRLKQG 540 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + + + + + QAL F + + Sbjct: 541 VPAFEQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETA 600 Query: 597 EIEK-------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634 +I ++A++T +A + L E+ I +E + Sbjct: 601 QILALPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647 >gi|126343802|ref|XP_001380636.1| PREDICTED: similar to coiled-coil domain containing 88, partial [Monodelphis domestica] Length = 528 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 28/218 (12%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 Q +R+RL L ++ G ++ RL Q +E Sbjct: 102 QELRERLGALDKEVRGARQGQEEARVQHQALLRDHEALGRLQQ-------------RQEV 148 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE-------EIH 538 L L H + L ++ + ELQ L + + + Sbjct: 149 ELEGLLGRHREL----KATLRELELSHKELQGRHEQLLAQRAQMEAQEVALQGERERLAQ 204 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 RL ++G E L++L + A + A ++ QG + L L R + E Sbjct: 205 DRLHQKGLEEELRRLQSEHERAQVSLADASRERGEL-QGERGELRGRLARLELERAQLEA 263 Query: 599 EKQ-IAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 + Q + + + + + ++ ++ + +E Sbjct: 264 QGQGLREANQRLDLSVCQLTTQ--CQLLTELRAAQEEE 299 >gi|123455955|ref|XP_001315717.1| hypothetical protein [Trichomonas vaginalis G3] gi|121898402|gb|EAY03494.1| hypothetical protein TVAG_450670 [Trichomonas vaginalis G3] Length = 1031 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 41/329 (12%), Positives = 108/329 (32%), Gaps = 33/329 (10%) Query: 342 LIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDER 401 I ++ + +D + +A E+ + + + + Sbjct: 311 HIINKVISLSPSTIKKDIQDILNGKTSSAIEESFAKITEYYKQNFIEQQNTSEKEIIAKL 370 Query: 402 AELEIHLKNCINH------IKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR 455 + + I+ I+ Y +IR LQ Q+ Sbjct: 371 RNVVASNISFIHQLIDSKLIQSWSEVPYSLDSIRQLLQTEIQQIKESIQKNNIQLPTVET 430 Query: 456 HRDQ----KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN----HPAILQEQYQELAD 507 + ++++ + S K + S +E LL +I + A++Q + Sbjct: 431 IYNTFLFEMPSAEQITEISNYFEKFEETNSPKELELLGIVIQCIQSNFALVQYSNLNKSK 490 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 + +NE++ L + + + K +E + E +L K+L+ + + Sbjct: 491 VEKYSNEIKSLQNNIEAMNESAKAIKSDERARY--EAEISQLKKELEEMSNQNNEETDSE 548 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEK-----------QIAQVTAKGEAEKTA- 615 E N+ + L + + L EE+++ ++ ++ +K + Sbjct: 549 EQNVNNSDIIEFATRDLNNQNQELQNCVEELKRMVDEAKADSTTKMQEIESKNNENEQQL 608 Query: 616 -----ILISILHEVHIQIHQIESQEAMIE 639 L + E++ +I +++ + ++E Sbjct: 609 KQQISELQDKIIELNSEIQKMKDENDILE 637 >gi|29436380|gb|AAH49849.1| MYH9 protein [Homo sapiens] Length = 1374 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 40/265 (15%), Positives = 87/265 (32%), Gaps = 28/265 (10%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 EKL ++ + E E ++ ELE + +++++ R + QA + Sbjct: 880 AEKLQLQEQLQAETELCAEAEELRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKK 939 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 ++QQ Q+ + +K + + ++ + + +E LL Sbjct: 940 KMQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEEQIILEDQNCKLAKEKKLLE- 998 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + E L + + L KL + E +L Sbjct: 999 -----DRIAEFTTNLTEEEEKSKSLAKLKNK--------------------HEAMITDLE 1033 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 ++L R+ + T D Q L + L Q + E+++ A+ E Sbjct: 1034 ERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALARVE 1093 Query: 611 AEKTAILIS--ILHEVHIQIHQIES 633 E ++ + E+ QI +++ Sbjct: 1094 EEAAQKNMALKKIRELESQISELQE 1118 >gi|24762816|ref|NP_523860.2| zipper, isoform A [Drosophila melanogaster] gi|7291892|gb|AAF47311.1| zipper, isoform A [Drosophila melanogaster] Length = 2056 Score = 45.3 bits (105), Expect = 0.033, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1689 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1748 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1749 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1808 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1809 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1865 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1866 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1925 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1926 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1985 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1986 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 2024 >gi|331086030|ref|ZP_08335113.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406953|gb|EGG86458.1| hypothetical protein HMPREF0987_01416 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 635 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 13/90 (14%) Query: 5 RDFIKDLLIHIPISNLIGQYVDWDRRKT--NAVKGDYWACCPFHDEKTPSFHCNDSKGFY 62 ++ ++ + ++L YV R +Y + S N K + Sbjct: 2 EEYTREQIQRADDTDL---YVFLSGRGEQFKRCGKEYRWL------RHDSVMIN--KNEW 50 Query: 63 YCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 Y FS + G + F+ G SF E+V+ L Sbjct: 51 YRFSQNKGGHAIDFMKEFYGLSFAEAVKEL 80 >gi|297675863|ref|XP_002815872.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 1 [Pongo abelii] Length = 986 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 645 PRETLEYKAALELEMWKEIQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 702 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 703 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 762 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 763 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 819 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 820 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 876 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 877 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 914 >gi|228954821|ref|ZP_04116841.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229112016|ref|ZP_04241559.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15] gi|228671339|gb|EEL26640.1| hypothetical protein bcere0018_42590 [Bacillus cereus Rock1-15] gi|228804810|gb|EEM51409.1| hypothetical protein bthur0006_41880 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 786 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|205277392|ref|NP_001128512.1| dynactin subunit 1 isoform 3 [Homo sapiens] Length = 1253 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|218233457|ref|YP_002369349.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus B4264] gi|228960821|ref|ZP_04122456.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048260|ref|ZP_04193828.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676] gi|229129836|ref|ZP_04258802.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4] gi|229147111|ref|ZP_04275470.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24] gi|229152748|ref|ZP_04280932.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550] gi|296505027|ref|YP_003666727.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171] gi|226723046|sp|B7HF67|MUTS2_BACC4 RecName: Full=MutS2 protein gi|218161414|gb|ACK61406.1| MutS2 family protein [Bacillus cereus B4264] gi|228630726|gb|EEK87371.1| hypothetical protein bcere0011_42810 [Bacillus cereus m1550] gi|228636360|gb|EEK92831.1| hypothetical protein bcere0012_42480 [Bacillus cereus BDRD-ST24] gi|228653527|gb|EEL09399.1| hypothetical protein bcere0015_42760 [Bacillus cereus BDRD-Cer4] gi|228722985|gb|EEL74362.1| hypothetical protein bcere0027_42280 [Bacillus cereus AH676] gi|228798843|gb|EEM45822.1| hypothetical protein bthur0005_42770 [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326079|gb|ADH09007.1| DNA mismatch repair protein mutS [Bacillus thuringiensis BMB171] Length = 786 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIEQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|45433533|ref|NP_956114.2| eukaryotic translation initiation factor 3 subunit A [Danio rerio] gi|44890368|gb|AAH66670.1| Eukaryotic translation initiation factor 3, subunit 10 (theta) [Danio rerio] Length = 1267 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + ++ +++R + + + ++ A K + + Sbjct: 509 PFLQNMPSEQIRNQLTAMSSSLAKAIQVIKPASILQDHEEQRQQAITAYLKNARKEHQRI 568 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528 + + ++ E+ +E ++ ELQK+ E Sbjct: 569 LARRQTIEERKERLESL-------------NIQREKEELEQREAELQKVRKAEEERLRQE 615 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 K E I Q + + ++L++ + A + +I D+ + + K+ Sbjct: 616 AKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637 L ++K+E+++++ K + + A + + + ++ +++ +E + Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRIKDMELWELQEEERI 733 >gi|17233290|ref|NP_490380.1| replicative DNA helicase [Nostoc sp. PCC 7120] gi|17135812|dbj|BAB78358.1| replicative DNA helicase [Nostoc sp. PCC 7120] Length = 454 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 6/124 (4%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E A+L ++ P + L + + ++ + + K Sbjct: 13 RLPPQSIEAEEAILGGIMLDPEAMSRIGDRLISEAFYVGAHKDIYQAAHRLYGQGKPTDL 72 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 I L + G L R + L + + + R L + Sbjct: 73 LSITNWLSDHGL------LFRIGGRSKLATLVDRTVSAINIDALADLVMEKYQRRQLIKA 126 Query: 595 KEEI 598 EI Sbjct: 127 GNEI 130 >gi|326923519|ref|XP_003207983.1| PREDICTED: disks large homolog 5-like, partial [Meleagris gallopavo] Length = 1230 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 26/265 (9%), Positives = 84/265 (31%), Gaps = 18/265 (6%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + + + + + + + + ++ + + + Q +R Sbjct: 328 QAEEENRRLQKQIDMLMKQRDTAIHFQQQYSSSLRRFESVQQELSNATAQNKELQREMER 387 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 LQ ++ T + +K RD RL+ S + E L + Sbjct: 388 LQSEVTRFKTMQLKAAKDSEKYKEERDSVFNEYRLIMSERDQVIKEVDKLQTELELAESK 447 Query: 492 INH----PAILQEQYQEL--------ADIRYDNNELQKL---WSFLFSDFVEQ-KYFLPE 535 + + + E+ + L DI N E++ L + + + E + Sbjct: 448 LKNTSSEKRVASEEMEALRQIQDSATLDIERANKEIEMLRKQYEAMSQELKEAVQEAEVA 507 Query: 536 EIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + + + +++ + + + + D+ + + + K+ R+ Sbjct: 508 KCRRDWAFQERDKIVAERESIRTLCDNLRRERDRAVSDLAEALRNLDDMRKQKNDAVREL 567 Query: 596 EEIEKQIAQVTAKGEAEKTAILISI 620 +E+++++ + + L++ Sbjct: 568 KELKEKME--NQLEKEARFRQLMAH 590 >gi|289548463|ref|YP_003473451.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484] gi|289182080|gb|ADC89324.1| chromosome segregation protein SMC [Thermocrinis albus DSM 14484] Length = 1165 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 79/236 (33%), Gaps = 14/236 (5%) Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 E E + + + D +LR + + D L+ +K E Y + R R+ + Sbjct: 172 EYEEKKQKALADLGDVELRIRELRLLMDELEVHMEKLKEEVRKLEEYRELEERRRELQIK 231 Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 L++ + + +E L L ++ Q++ ++ ++ +L++L L Sbjct: 232 L--LVKEAQQIKTQLETIESKEKVLREELA---SLRQQEEEKQGELNLLEEKLKELREKL 286 Query: 523 FSDFVEQKYFL--PEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 E I RL + R ELL Q R + ++ Sbjct: 287 LPHREMVGRLSQKLESISNRLQQIARTKEELLDQRTTLERQLEHLKHDADRLRIEKEDLA 346 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q + + EE++K + + + L V +I ++E Sbjct: 347 HQLIQREEELTEDEVMLEELQKTLQEKES-----FLKASFGELESVEERIKKLEGT 397 >gi|194220584|ref|XP_001916761.1| PREDICTED: dynactin 1 (p150, glued homolog, Drosophila) [Equus caballus] Length = 1280 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|148666657|gb|EDK99073.1| dynactin 1 [Mus musculus] Length = 1280 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.2 bits (84), Expect = 8.4, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L + +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|119573385|gb|EAW53000.1| lamin A/C, isoform CRA_d [Homo sapiens] Length = 760 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%) Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 D A ++L G+ + R A +L Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278 Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 KR E + + A+LE L ++D+ LR +RLQ + ++ + Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + Y ++ R + + + + +L+ + + Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562 ++ + EL+K +S + + + E + + L Q+ Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620 A EA + D+ + +R E E+++A++ A+ + ++ L+ I Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491 Query: 621 LHEVHIQIHQ----IESQE 635 + ++IH +E +E Sbjct: 492 KLALDMEIHAYRKLLEGEE 510 >gi|119573383|gb|EAW52998.1| lamin A/C, isoform CRA_c [Homo sapiens] Length = 790 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%) Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 D A ++L G+ + R A +L Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278 Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 KR E + + A+LE L ++D+ LR +RLQ + ++ + Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + Y ++ R + + + + +L+ + + Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562 ++ + EL+K +S + + + E + + L Q+ Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620 A EA + D+ + +R E E+++A++ A+ + ++ L+ I Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491 Query: 621 LHEVHIQIHQ----IESQE 635 + ++IH +E +E Sbjct: 492 KLALDMEIHAYRKLLEGEE 510 >gi|118588138|ref|ZP_01545548.1| replicative DNA helicase [Stappia aggregata IAM 12614] gi|118439760|gb|EAV46391.1| replicative DNA helicase [Stappia aggregata IAM 12614] Length = 494 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 50/170 (29%), Gaps = 26/170 (15%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + +++ +L+ + E LL ++ + L + Q ++ + Sbjct: 4 TLQKVETEEDIQRLAPHNAEAERQLLGAILVNNETFYRVSDFLEPHHFFVPAHQDIYEKI 63 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 K P + ++ L +A + + Y + + Sbjct: 64 SHLIRAGKTASPITLKTFYPAN------AKIADLSATQFLLRLAGDAASIINAEDYGRTI 117 Query: 583 ALYKRFRLL--------------------SRQKEEIEKQIAQVTAKGEAE 612 R L S+Q ++ E+++ ++ G +E Sbjct: 118 YDLAIRRNLIRIGEDMVNIAFDAPIDVPPSQQIDDAERRLFELAETGRSE 167 >gi|237713053|ref|ZP_04543534.1| DNA primase [Bacteroides sp. D1] gi|254882711|ref|ZP_05255421.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|262407357|ref|ZP_06083905.1| DNA primase [Bacteroides sp. 2_1_22] gi|229446870|gb|EEO52661.1| DNA primase [Bacteroides sp. D1] gi|254835504|gb|EET15813.1| DNA primase [Bacteroides sp. 4_3_47FAA] gi|262354165|gb|EEZ03257.1| DNA primase [Bacteroides sp. 2_1_22] Length = 318 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 5/54 (9%) Query: 26 DWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSA 79 ++ N W P +E SF N + +Y F+ G+ ++ Sbjct: 22 PVKQQGINL-----WYKSPLREETEASFKVNTERNQWYDFALGKGGNIIALAQE 70 >gi|254423630|ref|ZP_05037348.1| replicative DNA helicase [Synechococcus sp. PCC 7335] gi|196191119|gb|EDX86083.1| replicative DNA helicase [Synechococcus sp. PCC 7335] Length = 453 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 8/156 (5%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + +L + E A+L ++ P + + L+ + + ++ Sbjct: 4 SEPRFKPAADRLPPQNIEAEEAILGGVLIDPEAIGRVTELLSPEAFYIGAHRSIYQAALD 63 Query: 525 DFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584 + L ++G L++ + L Y Q + Sbjct: 64 LQARGLPTDMMGVASWLKDKG------ALEKVGGQSRLAQLVDRTISAANIDQYAQLVMD 117 Query: 585 YKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILI 618 R L R EI + + E + + + Sbjct: 118 KYTRRQLIRSGGEIIQLGYETETSLEDVLDLSEQTL 153 >gi|195029593|ref|XP_001987656.1| GH22039 [Drosophila grimshawi] gi|193903656|gb|EDW02523.1| GH22039 [Drosophila grimshawi] Length = 2021 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA A + L + ED + + L Sbjct: 1651 DEERKQRTAAVAAKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1710 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1711 AAKEELQALSKESERKVKALEAEVLQLSEDLASSERARRAAETERDELAEEINNNANKGS 1770 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1771 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1827 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1828 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1887 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1888 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1947 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1948 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1986 >gi|114578175|ref|XP_001156649.1| PREDICTED: dynactin 1 isoform 14 [Pan troglodytes] Length = 1266 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588 Score = 40.6 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434 Score = 37.9 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323 >gi|114578171|ref|XP_001156699.1| PREDICTED: dynactin 1 isoform 15 [Pan troglodytes] Length = 1274 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 241 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 300 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 301 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 360 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 361 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 420 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 421 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 480 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 481 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 540 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 541 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 596 Score = 40.6 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 225 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 284 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 285 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 344 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 345 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 398 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 399 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 442 Score = 37.9 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 217 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 276 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 277 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 331 >gi|82237696|sp|Q6PCR7|EIF3A_DANRE RecName: Full=Eukaryotic translation initiation factor 3 subunit A; Short=eIF3a; AltName: Full=Eukaryotic translation initiation factor 3 subunit 10; AltName: Full=eIF-3-theta gi|37589184|gb|AAH59196.1| Eukaryotic translation initiation factor 3, subunit 10 (theta) [Danio rerio] Length = 1267 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 25/239 (10%), Positives = 80/239 (33%), Gaps = 25/239 (10%) Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 + ++ +++R + + + ++ A K + + Sbjct: 509 PFLQNMPSEQIRNQLTAMSSSLAKAIQVIKPASILQDHEEQRQQAITAYLKNARKEHQRI 568 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF-VE 528 + + ++ E+ +E ++ ELQK+ E Sbjct: 569 LARRQTIEERKERLESL-------------NIQREKEELEQREAELQKVRKAEEERLRQE 615 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 K E I Q + + ++L++ + A + +I D+ + + K+ Sbjct: 616 AKEREKERIMQEHEQIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEE-LDPDFIMAKQV 674 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI----------QIHQIESQEAM 637 L ++K+E+++++ K + + A + + + ++ +++ +E + Sbjct: 675 EQLEKEKKELQERLKNQEKKIDYFERAKRLEEIPLIKKAYEEQRIKDMELWELQEEERI 733 >gi|31982906|ref|NP_116255.2| cingulin-like protein 1 [Homo sapiens] gi|332278171|sp|Q0VF96|CGNL1_HUMAN RecName: Full=Cingulin-like protein 1; AltName: Full=Junction-associated coiled-coil protein; AltName: Full=Paracingulin gi|31074979|gb|AAP42073.1| KIAA1749 protein [Homo sapiens] Length = 1302 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + +L L + + E + + L +D+ Sbjct: 972 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031 Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L R Q ++D +L K + + + + + +S + + Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534 + + L L+ A Q+ + + N +L+ L + E Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591 E L +R E + + Q+ + L E + + Q L R + + Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211 Query: 592 SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639 RQ EE E++I ++ + + ++ ++E + Q++ ++ + + Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261 Score = 42.6 bits (98), Expect = 0.21, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 +++++L I + ++ + + R+R++ ++ ++H+ + + Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + R L + K+ ++ E L + + + + R ++ E L Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728 Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570 L + + L + Q R ER L L +V +A Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788 Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + +R+ ++A LA + E+ ++ Q + ++ L + ++ Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848 Query: 625 HIQIHQIESQEA 636 QI ++ EA Sbjct: 849 QRQIEDLKGDEA 860 Score = 37.2 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++R L + D A+ L + + ED R Sbjct: 699 EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423 TA + + E + D + E R +E K + + + Sbjct: 758 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +R +L Q + + S + + + +K + L Sbjct: 818 AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877 Query: 484 EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 EA + + A+ E ++ E ++L L + +++ + Sbjct: 878 EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 G+ +++L +++ D S T+ + + Y++ + + RQ +E Sbjct: 938 EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995 Query: 598 --IEKQIAQVTAKGEAEKTAILISILHEVHI 626 +E + +++TA ++ ++ L + Sbjct: 996 KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026 >gi|50949611|emb|CAH10575.1| hypothetical protein [Homo sapiens] Length = 890 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.6 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 5.1, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|50949613|emb|CAH10572.1| hypothetical protein [Homo sapiens] Length = 890 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.3 bits (92), Expect = 0.95, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 5.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|328772569|gb|EGF82607.1| hypothetical protein BATDEDRAFT_86540 [Batrachochytrium dendrobatidis JAM81] Length = 1169 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 102/328 (31%), Gaps = 17/328 (5%) Query: 315 PRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKL 374 R+ D + + R +DP+ R + + K+ Sbjct: 708 QRLQEFEDRQHELDLEQQLQHEFEEKLHQERQAWKELQQQREQDPE---RQHERQQRRKM 764 Query: 375 IVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQ 434 + E K E + +++ ELE L+ + + +L + + ++ Sbjct: 765 LEERHKQEHHKKKEREEKQRQKELEQQPELEQRLQEFESRQRSIQLEKMLDRDFEENFKK 824 Query: 435 LFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-----LL 489 +K + + + R Q+ K ++ R+ L L Sbjct: 825 QGRKLKQKLEKERQQNPEEQHERQQRRKGSEERHKQEHHKKKEREEKQRQKELEQQPELE 884 Query: 490 TLINHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFG 547 + Q Q +++ D ++ +K L +++ PEE H+R R Sbjct: 885 QRLQEFESRQRSIQLEKMLDRDFE-ENFKKQGRKLKQKLEKERQQNPEEQHERQQRRKGS 943 Query: 548 ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-EEIEKQIAQVT 606 E +R ++ E + Q L +R L + + E+++ + Sbjct: 944 E-----ERHKQEHHKKKEREEKQRQKELEQRLQELEDRQRSMQLEKMLQRDFEEKVERQG 998 Query: 607 AKGEAEKTAILISILHEVHIQIHQIESQ 634 K + + L E+ Q + E Q Sbjct: 999 RKFKQKLEKERQQELEELEKQRQEKEDQ 1026 >gi|237786615|ref|YP_002907320.1| Replicative DNA helicase [Corynebacterium kroppenstedtii DSM 44385] gi|237759527|gb|ACR18777.1| Replicative DNA helicase [Corynebacterium kroppenstedtii DSM 44385] Length = 496 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 4/85 (4%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFS 524 + G+ S + E A+L ++ + + + L + + Q +++ + Sbjct: 40 PDPRDYEEFGRKSPQDIEAEQAVLGGMLQSQDAITDVVEILRADDFYDPRHQTIFNGILD 99 Query: 525 DFVEQKY----FLPEEIHQRLCERG 545 + E P + RL G Sbjct: 100 LYSESADAQLQIDPVLVSNRLNRDG 124 >gi|1419567|emb|CAA67333.1| dynactin [Homo sapiens] Length = 1263 Score = 45.3 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 225 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 284 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 285 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 344 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 345 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 404 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 405 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 464 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 465 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 524 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 525 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 580 Score = 40.3 bits (92), Expect = 0.94, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 209 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 268 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 269 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 328 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 329 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 382 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 383 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 426 Score = 37.9 bits (86), Expect = 5.2, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 201 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 260 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 261 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 315 >gi|331243494|ref|XP_003334390.1| hypothetical protein PGTG_16259 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309313380|gb|EFP89971.1| hypothetical protein PGTG_16259 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 1543 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 33/265 (12%), Positives = 89/265 (33%), Gaps = 4/265 (1%) Query: 373 KLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRL 432 + + + ++ S + + L + ++ K R S D Sbjct: 1155 EKLESEKATQEQEIEQLQNRLSEARDEVESLLSKSQEQQERLQENDKEREALSDDKEDLE 1214 Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 QL + H + + + L + S K + + Sbjct: 1215 DQLEAANLKLHETEAQLSQVTEARDSMDAEIRALHTQNKESSASSAKIEQLQETISKLET 1274 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + ++ A++R EL++ + + + L FG+L + Sbjct: 1275 ENAEYAEQHSSLTAEVRQLKTELERKAHTIINSEKSYHRVQATLEKRTL---DFGQLEDE 1331 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEA 611 L+R+ + + T + D + ++ + + + L ++++ Q+ Q +A + Sbjct: 1332 LERKTNEIMGLNETNNNLLKDTKALRKELIKVKAEAQDLGHHLQDLKDQVDRQASAPNNS 1391 Query: 612 EKTAILISILHEVHIQIHQIESQEA 636 ++ L + L ++++++SQ A Sbjct: 1392 KEMTKLKNELSLCKKELNELKSQRA 1416 >gi|297675867|ref|XP_002815874.1| PREDICTED: centrosomal protein of 120 kDa-like isoform 3 [Pongo abelii] Length = 960 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 89/278 (32%), Gaps = 9/278 (3%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 619 PRETLEYKAALELEMWKEIQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 676 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ S ++ + ++ + + +Q S+ + K Sbjct: 677 AEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDC 736 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L Q+L D L+K + + + Sbjct: 737 IHQVELERLKIKQLEEDK---HRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSE 793 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 L EL ++L+ + + + ++ + Q+ + L +Q+EE Sbjct: 794 INLLTLEKV-ELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQEE 850 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 +E+ + A E + L ++ +++++ QE Sbjct: 851 LEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 888 >gi|291401345|ref|XP_002717248.1| PREDICTED: centromere protein E [Oryctolagus cuniculus] Length = 2697 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 34/218 (15%), Positives = 75/218 (34%), Gaps = 18/218 (8%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + + TE S + + +K ++ L L + RE L+ Sbjct: 855 AQKFRLNLDTLKTELSHKTQELNQKTTEGQEKLKEMEQLKEQLETRDLRLQTIEREKTLI 914 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFL----------FSDFVEQKYFLPEEIH 538 LQ+ +E+ + + ++L++L L D V E++ Sbjct: 915 A------EELQQTLEEVRTLTQEKDDLRQLQESLQTERDQLKSDIQDTVNMNIDTQEQLR 968 Query: 539 QRLCE-RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK-E 596 L + + E + L ++ + + E N+ + QQ + + + L QK + Sbjct: 969 NALESLKQYQETITILKMKISEETARNLHVEENMGETEDELQQKMVDIDKNQNLDAQKTK 1028 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + + A + K LI E+ ++ I ++ Sbjct: 1029 ALIADVTDDEASEQQRKILSLIQEKKELQQRLENITAE 1066 >gi|210611854|ref|ZP_03289061.1| hypothetical protein CLONEX_01260 [Clostridium nexile DSM 1787] gi|210151838|gb|EEA82845.1| hypothetical protein CLONEX_01260 [Clostridium nexile DSM 1787] Length = 452 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 16/113 (14%) Query: 3 YPRDFIKDLLIHIPISNLIGQ--YVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 I+++ +I I ++ Q Y R + + H+ S + + Sbjct: 49 INTQIIQEIESNIKIVDVANQMGY-TLKREGRHYTIKE-------HE----SVRIDVDRN 96 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKI 113 + +S +G + F+S E + LA+ + I++KEK Sbjct: 97 LFIRYSNGHRGSVIDFISEFKNQPKNEVINELASE--INFNYNSHGIKRKEKK 147 >gi|89901605|ref|YP_524076.1| hypothetical protein Rfer_2833 [Rhodoferax ferrireducens T118] gi|89346342|gb|ABD70545.1| hypothetical protein Rfer_2833 [Rhodoferax ferrireducens T118] Length = 154 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 11 LLIHIP--ISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFS-C 67 L ++P IS + + R C FH S N G + C + C Sbjct: 5 LRENLPDPISYFESEGLKLQGRGIWRTTA-----CSFHGGSD-SMRVNTHTGAFVCMAAC 58 Query: 68 HV-KGDHLSFLSALLGCSFIESVQRLAAI 95 GD L++ A G F+ + L A+ Sbjct: 59 GARGGDVLAYHMATHGLDFVTAASALGAM 87 >gi|47205442|emb|CAG05719.1| unnamed protein product [Tetraodon nigroviridis] Length = 1398 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 22/271 (8%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLF 436 + + E E ++ ELE L + D++ R + ++QQ Sbjct: 254 QEQLQAETELFAEAEEMRVRLAAKKQELEEILHEMEARLDDEEERAQALLLDKKKMQQQM 313 Query: 437 QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPA 496 Q+ +K + + ++ ++ + L+E L+ Sbjct: 314 QELEEHLEEEEDARQKLQLEKVTCEGKIKKLEDEILVMEDHNNKLLKERKLME------D 367 Query: 497 ILQEQYQELADIRYDNNELQKLWSF-----------LFSDFVEQKYFLPEEIHQRLCERG 545 + + LA+ + L KL + L + ++ + Sbjct: 368 RIADISTNLAEEEEKSKNLTKLKNKHESMISELEVRLKKEEKCRQELDKAKRKLEAESND 427 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV 605 E + L Q+ + A E + + + +A + ++ E+E I+ + Sbjct: 428 LQEQIADLQAQIAELKAQLAKKEEELQNALARLEDEMA---QKNNALKKIRELEGHISDL 484 Query: 606 TAKGEAEKTAILISI--LHEVHIQIHQIESQ 634 ++E+ A + ++ ++ ++S+ Sbjct: 485 QEDLDSERAARNKAEKIKRDLGEELEALKSE 515 >gi|47230389|emb|CAF99582.1| unnamed protein product [Tetraodon nigroviridis] Length = 1905 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 26/228 (11%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R Y IRD LQ + E + R L S+ + Sbjct: 1262 KIEREQYQTEIRD-LQDQLSEMHDELDTAKKSVADGERTAMMAVTPSPLFDFSVWADMMH 1320 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 K L+E L ++ ++ EL L L + +++ Sbjct: 1321 LKLELQEILLAK------------EEQEDVLKRRERELTALKGALKEEVAAH-DQEVDKL 1367 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKE 596 ++ + L + + A + +A + + + QA L L R+ + Sbjct: 1368 KEQYEKEIGRLQLSLEEAKQSSAAV--VREKAEVEAAKGAVEGQAGRLTLETERLRRRAQ 1425 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQE 635 E+E ++A++ + K L ++ + +I QE Sbjct: 1426 ELENEVAKLNRIIDEAKLQESRLGDRVGRLEKEKKQLEESLAEIREQE 1473 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 21/156 (13%) Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE------- 543 L+ A Q+ + + N +L+ S L K L ++ R+ E Sbjct: 1705 LLQERAGRQDLECDKIALERQNKDLKSRLSHLEGSQKSNKENLVSQLEARIQELEERLEG 1764 Query: 544 -----RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++L+R+V++ + +++D + L R + L RQ +E Sbjct: 1765 EERERANLQLANRRLERKVKEMVMQGEEEHNSLLDQKDQ------LNLRLKALKRQMDEA 1818 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQI-HQIES 633 E++I ++ +K + EV+ Q+ +Q++ Sbjct: 1819 EEEIDRLEHA--KKKLQRELDEQQEVNDQLQNQLKG 1852 Score = 41.8 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 63/175 (36%), Gaps = 4/175 (2%) Query: 469 SSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVE 528 + K +++ L E + +N Q Q + I +++++ + L + Sbjct: 1652 KAGAKDDRARQIKLMEDRIAQLELNLEEERQSGDQLMDRIDRGREQVEQMRNELLQERAG 1711 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLD-RQVRDAGLWSATTEANIVDVRQGYQQALALYKR 587 ++ ++I + L L+ Q + + EA I ++ + + Sbjct: 1712 RQDLECDKIALERQNKDLKSRLSHLEGSQKSNKENLVSQLEARIQELEERLEGEERERAN 1771 Query: 588 FRLLSRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +L +R+ E K++ + ++ L L + Q+ + E + +E Sbjct: 1772 LQLANRRLERKVKEMVMQGEEEHNSLLDQKDQLNLRLKALKRQMDEAEEEIDRLE 1826 >gi|332239086|ref|XP_003268736.1| PREDICTED: dynactin subunit 1 [Nomascus leucogenys] Length = 1278 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 0.97, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|320040240|gb|EFW22173.1| conserved hypothetical protein [Coccidioides posadasii str. Silveira] Length = 1259 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 25/232 (10%), Positives = 70/232 (30%), Gaps = 18/232 (7%) Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 +R Q I + + + + + R + + + + K Sbjct: 583 LVRSSLEQQIANLQRTMQDEKASHLQELKRREMLKSDALAAQKEELQGHLQEMKKKDDQA 642 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 A + E Q++A + +++ + + E+ Sbjct: 643 AAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDTKKTELETKQGELD 702 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK----RFRLLSRQ 594 + + +LD + + + EA ++ ++ + ++R Sbjct: 703 AK--QAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQSEVEAKQEEINRL 760 Query: 595 KEEIEKQIAQVTA------------KGEAEKTAILISILHEVHIQIHQIESQ 634 K E+E +IA++ + + + + L EV ++ + +SQ Sbjct: 761 KSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELEEKKSQ 812 Score = 39.1 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 94/267 (35%), Gaps = 18/267 (6%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 E + + R+ LE + N ++D+ + + Q ++ R + Sbjct: 572 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 629 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506 + ++ + DQ + + + G+ + + E + + + E +L Sbjct: 630 GHLQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDT 689 Query: 507 ----------DIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRL--CERGFGELLKQ 552 ++ ELQ S L + E E L ++ E + Sbjct: 690 KKTELETKQGELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQSE 749 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 ++ + + + E+ I ++ ++ + + I+ ++ +V A+ E E Sbjct: 750 VEAKQEEINRLKSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELE-E 808 Query: 613 KTAILISILHEVHIQIHQIESQEAMIE 639 K + L S ++ + ++ +++A ++ Sbjct: 809 KKSQLESKQADLDKKQEELTAKQAELD 835 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 12/216 (5%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 QA ++L+ ++ E W++ A K + L K + E Sbjct: 641 QAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDTKKTELETKQGE 700 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 + E ++ ++L+ + L E + E + Sbjct: 701 LDAKQAELQAKQ--SELDARQEELNATKSDLEAKQAELVDRQKELEEKQSEV---EAKQE 755 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-- 602 L +L+ ++ + E ++ + A+ + + + EE + Q+ Sbjct: 756 EINRLKSELESKIAELEDKRRELEQKQGELESKQTELQAIQDELQEVKAELEEKKSQLES 815 Query: 603 AQVTAKGEAEKTAILISILHEVH----IQIHQIESQ 634 Q + E+ + L +V ++ + +Q Sbjct: 816 KQADLDKKQEELTAKQAELDDVKEKHAAELAALRAQ 851 >gi|301783281|ref|XP_002927054.1| PREDICTED: myosin-11-like isoform 2 [Ailuropoda melanoleuca] Length = 1972 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + A EK +++ + E E ++ ELE L +++++ Sbjct: 877 ELEQKHSQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 936 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R QA + ++ Q + +K + + ++ ++ Sbjct: 937 RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 996 Query: 481 SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537 +E LL I+ L E+ ++ ++ N+ + + S L E+ E++ Sbjct: 997 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1056 Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++L F E + L Q+ + + A E + +A + ++ Sbjct: 1057 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALSRLDDEIA---QKNNALKKI 1113 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 E+E I+ + ++E+ A + ++ ++ ++++ Sbjct: 1114 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154 >gi|301783279|ref|XP_002927053.1| PREDICTED: myosin-11-like isoform 1 [Ailuropoda melanoleuca] Length = 1979 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 102/281 (36%), Gaps = 10/281 (3%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + A EK +++ + E E ++ ELE L +++++ Sbjct: 884 ELEQKHSQLAEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 943 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R QA + ++ Q + +K + + ++ ++ Sbjct: 944 RGQQLQAEKKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNNK 1003 Query: 481 SLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537 +E LL I+ L E+ ++ ++ N+ + + S L E+ E++ Sbjct: 1004 LSKERKLLEERISDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKL 1063 Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 ++L F E + L Q+ + + A E + +A + ++ Sbjct: 1064 KRKLEGEASDFHEQIADLQAQIAELKMQLAKKEEELQAALSRLDDEIA---QKNNALKKI 1120 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 E+E I+ + ++E+ A + ++ ++ ++++ Sbjct: 1121 RELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1161 >gi|195489897|ref|XP_002092933.1| GE11388 [Drosophila yakuba] gi|194179034|gb|EDW92645.1| GE11388 [Drosophila yakuba] Length = 2011 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1644 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1703 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1704 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1763 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1764 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1820 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1821 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1880 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1881 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1940 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1941 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 1979 >gi|182625417|ref|ZP_02953190.1| replicative DNA helicase [Clostridium perfringens D str. JGS1721] gi|177909414|gb|EDT71866.1| replicative DNA helicase [Clostridium perfringens D str. JGS1721] Length = 433 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 15/140 (10%), Positives = 53/140 (37%), Gaps = 6/140 (4%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L T+ + + + EL D + N++ + ++ + + + F + ++L Sbjct: 12 EEAILGTITANNKYMLKVIGELDDNDFYNSKNKMIYRAMCNLYKNSISFDVVVLSEKLSN 71 Query: 544 R--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR----FRLLSRQKEE 597 L + + + + ++ IV + ++ + +R ++ + Sbjct: 72 EVKNGAITLTDIAEKTSNIDYGTLSSHVKIVKEKSRERKLVNACQRVISSEGNVNSKINY 131 Query: 598 IEKQIAQVTAKGEAEKTAIL 617 ++ ++ +V + + Sbjct: 132 LQNELLEVNQVNRKDSIKNM 151 >gi|146075814|ref|XP_001462780.1| hypothetical protein [Leishmania infantum JPCM5] gi|134066860|emb|CAM60001.1| hypothetical protein LINJ_03_0260 [Leishmania infantum JPCM5] Length = 2143 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 565 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEARE 624 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 625 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 684 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 685 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 744 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 745 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 802 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 803 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 847 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 1072 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 1131 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 1132 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 1191 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 1192 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1251 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 1252 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQRAE 1309 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 1310 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1354 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 79/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 448 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 507 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 508 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 567 Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIH 538 E A + + ++ +++ + + L + + E++ Sbjct: 568 ELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLA 627 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 628 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 685 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 686 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 730 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 214 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 274 QLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 333 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 334 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 393 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 394 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 451 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 452 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 496 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R+Q + +Q LV + E Sbjct: 786 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE--LE 843 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541 A + + ++ +++ + + L + + E++ Sbjct: 844 AQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAA-- 901 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600 + L +Q + A A+ + R+ A L +R ++Q+ E+E Sbjct: 902 NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEA 961 Query: 601 QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 Q+A++ A + + L L Q ++E+Q A Sbjct: 962 QVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1003 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 838 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEARE 897 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 898 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 957 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 958 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1017 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 1018 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE 1075 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 1076 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1120 Score = 44.9 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 682 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 741 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 742 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRA 801 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 802 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 861 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 862 A--NAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 919 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 920 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 964 Score = 44.5 bits (103), Expect = 0.053, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 79/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 526 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 585 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 586 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 645 Query: 484 E--AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIH 538 E A + + ++ +++ + + L + + E++ Sbjct: 646 ELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLA 705 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 706 A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 763 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 764 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 808 Score = 44.5 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 799 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 858 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 859 QLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 918 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 919 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 978 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 979 A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 1036 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 1037 LEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 1081 Score = 44.1 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R+Q + +Q LV + E Sbjct: 1215 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE--LE 1272 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541 A + + ++ +++ + + L + + E++ Sbjct: 1273 AQVARLAADRDEAREQLAANAEELQQRLATAAQQRAELEAQVARLAADRDEAREQLAA-- 1330 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600 + L +Q + A A+ + R+ A L +R ++Q+ E+E Sbjct: 1331 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLATAAQQRAELEA 1390 Query: 601 QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 Q+A++ A + + L L Q ++E+Q A Sbjct: 1391 QVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1432 Score = 44.1 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 74/222 (33%), Gaps = 14/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R+Q + +Q LV + E Sbjct: 357 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE--LE 414 Query: 485 AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 A + + ++ +EL + + + + E++ Sbjct: 415 AQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAA-- 472 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600 + L +Q + A A+ + R+ A L +R ++Q+ E+E Sbjct: 473 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEA 532 Query: 601 QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 Q+A++ A + + L L Q ++E+Q A Sbjct: 533 QVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 574 Score = 43.7 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 75/222 (33%), Gaps = 14/222 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 ++ ++ RL Q+ + R R+Q + +Q LV + E Sbjct: 942 AEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAE--LE 999 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL---FSDFVEQKYFLPEEIHQRL 541 A + + ++ +++ + + L + + E++ Sbjct: 1000 AQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVARLAADRDEAREQLAA-- 1057 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEEIEK 600 + L +Q + A A+ + R+ A L +R ++Q+ E+E Sbjct: 1058 NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEA 1117 Query: 601 QIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 Q+A++ A + + L L Q ++E+Q A Sbjct: 1118 QVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1159 Score = 43.3 bits (100), Expect = 0.12, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 78/285 (27%), Gaps = 14/285 (4%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 + A + E + D+ Sbjct: 916 QRAELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEARE 975 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 A + LQQ + + + A RD+ L + ++ Sbjct: 976 QLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 1035 Query: 484 E--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 E A + + ++ +EL + + + + E++ Sbjct: 1036 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLA 1095 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKEE 597 + L +Q + A A+ + R+ A L +R ++Q+ E Sbjct: 1096 A--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAE 1153 Query: 598 IEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 +E Q+A++ A + + L L Q ++E+Q A Sbjct: 1154 LEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRAELEAQVA 1198 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 14/226 (6%) Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 + + + + LQQ + R +++ + + L + ++ Sbjct: 156 HALRGVIETLQQALNDAQCNAAKAATSAAAQLRTAEEENAALKSTADLLQQRLVTAAQQR 215 Query: 483 RE--AALLLTLINHPAILQE---QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 E A + + ++ +EL + + + + E++ Sbjct: 216 AELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVARLAADRDEAREQL 275 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQ-QALALYKRFRLLSRQKE 596 + L +Q + A A+ + R+ A L +R ++Q+ Sbjct: 276 AA--NAEELQQRLVTATQQRAELEAQVARLAADRDEAREQLAANAEELQQRLVTAAQQRA 333 Query: 597 EIEKQIAQVTAKGEAEK------TAILISILHEVHIQIHQIESQEA 636 E+E Q+A++ A + + L L Q ++E+Q A Sbjct: 334 ELEAQVARLAADRDEAREQLAANAEELQQRLVTATQQRAELEAQVA 379 >gi|319939342|ref|ZP_08013702.1| ABC transporter [Streptococcus anginosus 1_2_62CV] gi|319811328|gb|EFW07623.1| ABC transporter [Streptococcus anginosus 1_2_62CV] Length = 632 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSDTGSTLYLGDYDYYLEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + A + N ++ ++A L +R L + EE+E Q Sbjct: 532 KAELEALRE--EKATAAEPTQPQSVTNYQLQKETQKEARKLARRLEQLEAEIEELEMQTT 589 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638 ++T + A L E+ ++ Q+ E QEA + Sbjct: 590 ELTTAMQETNDAS---ELMELQQKLDQLTERQEAAM 622 >gi|301615183|ref|XP_002937063.1| PREDICTED: myosin-10 [Xenopus (Silurana) tropicalis] Length = 1971 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 95/265 (35%), Gaps = 22/265 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 + E E ++ ELE L++ +++++ R Q + ++Q Q + Sbjct: 900 ETELFAEAEEMRARLAIKKQELEEILRDLEIRMEEEEERNQVLQNEKKKMQAHVQDLEEQ 959 Query: 443 HSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQY 502 +K + + M+ ++ + L+E LL + E Sbjct: 960 LDEEEAARQKLQLEKVTAEAKIKKMEEDILVLEDQNSKFLKEKKLLE------ERIAEST 1013 Query: 503 QELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEIHQRLCER---------GFGELLK 551 +LA+ L KL + +E++ E+ Q L + + + Sbjct: 1014 SQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKTRQELEKAKRKLDGETTDLQDQIA 1073 Query: 552 QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA 611 +L Q+ + L A E +++ + + + E++ QIA++ E+ Sbjct: 1074 ELQAQIEELKLQLAKKE---EELQAALARGDEEVLQKNNTLKVVRELQAQIAELQEDLES 1130 Query: 612 EKTAILISILH--EVHIQIHQIESQ 634 EK + + ++ ++ ++++ Sbjct: 1131 EKASRNKAEKQKRDLSEELEALKTE 1155 Score = 43.0 bits (99), Expect = 0.16, Method: Composition-based stats. Identities = 29/260 (11%), Positives = 89/260 (34%), Gaps = 23/260 (8%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L +++ ++++ + + + ++RLQQ + + +K Sbjct: 1392 EEVKKKLLKDMESLGQRLEEKGIAHEKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1451 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L Sbjct: 1452 KKFDQLLAEEKNISARNAEERDRAEADAREKETKAL-----SLARALDEALEGRDEFERL 1506 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + +R + ++++ Q+ + TE + + Sbjct: 1507 NKQLRAEMEDLMSSKDDVGKNVHELEKSKRALEQQVEEMRTQLEELEDELQGTEDAKLRL 1566 Query: 575 RQGYQQ-----ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS---------I 620 Q L R +K + KQ+ ++ A+ E E+ ++ Sbjct: 1567 EVNMQAMKAQFERDLQTRDEQNEEKKRALVKQVRELEAELEDERKQRAMAVAIKKKLEMD 1626 Query: 621 LHEVHIQIHQI-ESQEAMIE 639 + ++ QI + +E I+ Sbjct: 1627 MKDLESQIEAANKGREDAIK 1646 >gi|302559501|ref|ZP_07311843.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000] gi|302477119|gb|EFL40212.1| ATP-dependent chaperone ClpB [Streptomyces griseoflavus Tu4000] Length = 865 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 26/244 (10%), Positives = 73/244 (29%), Gaps = 41/244 (16%) Query: 424 YSQAIRDRLQQLFQKYITEHSGY-----------GRYWKKNARHRDQKGPSQRLMQSSLV 472 Y +RL+ + + G ++ L + L Sbjct: 252 YRGEFEERLKTVLAEIKESDGQVVTFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELR 311 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + RE + PA+ + ++Q++ + + L + Sbjct: 312 MVGATTLDEYRER-----IEKDPAL-ERRFQQVLVAEPTVEDSIAILRGLKGRYEAHHKV 365 Query: 533 LPEE----IHQRLCERGF------GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 + L +R + + +D + ++ I ++++ + Sbjct: 366 QIADSALVAAATLSDRYITSRFLPDKAIDLVDEAASRLRMEIDSSPVEIDELQRAVDRLR 425 Query: 583 ------------ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 A +R L R + E+++ + A+ + EK ++ + E+ ++ + Sbjct: 426 MEELAIGKETDAASRERLDKLRRDLADKEEELRGLNARWDKEK--QSLNRVGELKEKLDE 483 Query: 631 IESQ 634 + Q Sbjct: 484 LRGQ 487 >gi|302879165|ref|YP_003847729.1| replicative DNA helicase [Gallionella capsiferriformans ES-2] gi|302581954|gb|ADL55965.1| replicative DNA helicase [Gallionella capsiferriformans ES-2] Length = 465 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 10/129 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 KL E ++L L+ + L + L + + E + ++ + + K Sbjct: 15 KLPPHSVEAEQSVLGGLMLESSALDKITDILGEDDFYRREHRLIYRHIVRMSEQAKPVDV 74 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L +LD+ + L S + Y + + R R + R+ Sbjct: 75 ITVAEALENS------DELDKAGGLSYLGSLVQNVPSAANIRRYGEIV----RERSVMRR 124 Query: 595 KEEIEKQIA 603 E+ IA Sbjct: 125 LAEVGSDIA 133 >gi|160875208|ref|YP_001554524.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS195] gi|160860730|gb|ABX49264.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS195] gi|315267401|gb|ADT94254.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS678] Length = 1270 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 30/523 (5%) Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLIDGDNS 195 +L+ + + I++++L + R + E L + Sbjct: 129 ADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNED 188 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 LI R Q R + + LN+P+T L + L+ F + Sbjct: 189 QRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVFGISS 246 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 Q I+L +N + QL LW+ Sbjct: 247 MAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEEKL 306 Query: 316 RI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 + L + G ++L H G+ V DP S ++ Sbjct: 307 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGVQYDI 366 Query: 374 LIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 L +++L D + ENR D+++ + + + + L + + + + Sbjct: 367 LEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREV--ETLHDHLLELLSN 424 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + + Y K + + +G + P + LL Sbjct: 425 HADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLG 484 Query: 491 L------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQR 540 + + + E L + D++ELQ + +L ++ L + + Sbjct: 485 INQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVPAF 544 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + + QAL F + + +I Sbjct: 545 EQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILA 604 Query: 601 -------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634 ++A++T +A + L E+ I +E + Sbjct: 605 LPQVDALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647 >gi|109103429|ref|XP_001108541.1| PREDICTED: dynactin subunit 1-like isoform 10 [Macaca mulatta] Length = 1253 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 0.97, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|117923895|ref|YP_864512.1| lipopolysaccharide biosynthesis [Magnetococcus sp. MC-1] gi|117607651|gb|ABK43106.1| lipopolysaccharide biosynthesis [Magnetococcus sp. MC-1] Length = 537 Score = 45.3 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 34/264 (12%), Positives = 72/264 (27%), Gaps = 25/264 (9%) Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGR 448 T + P+ ++ + + ++ Q R Q E Sbjct: 138 YTLTHHHSDPEVAKQVVEGFLTILMEHSVEGVKNR-RQEKAQRF-LSEQVQKFEDKFAKS 195 Query: 449 YWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI 508 R Q + K+ + E L L L EQ + Sbjct: 196 DLAWQEFKRSNPLIRPDQGQGYYARLADFKQRAEDERLKLSALSKERDALAEQLAQRQRA 255 Query: 509 RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTE 568 + LQ + + E+ E++ +R+ L+ L+ G + Sbjct: 256 TLASTPLQAPR-AVVAPLNEEIDRNLEQLEERI--------LEMLETHYVVGGEKRYLYD 306 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI---------- 618 ++R Q L L +R + + + + Q + ++ Sbjct: 307 EAHPEIRSLRNQILELQRRKEEEMARLKSLSEMPQQAFNDEKDPVAQQILLDLRKVEVDL 366 Query: 619 ----SILHEVHIQIHQIESQEAMI 638 L E + Q+ + +EA + Sbjct: 367 ASAQGRLQEYNAQLADLRRREATV 390 >gi|324501460|gb|ADY40651.1| RB1-inducible coiled-coil protein 1 [Ascaris suum] Length = 1165 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 27/288 (9%), Positives = 81/288 (28%), Gaps = 13/288 (4%) Query: 321 FDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP 380 FD D + + L ++ G + ++ ++ S + + + + + Sbjct: 677 FDMDRRSNQMTFSDAMEHLKPILSGLHSVLLEMNETKEMISTHKDNVEEEVKAALNCAER 736 Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 ++D + E+ + R ++ I ++ RDR + ++ + Sbjct: 737 IIDECDRLRRESTKKEVEEARNHVKEECVAHYESIVNKLKTELEEGTKRDRELEDLREVL 796 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 E + + ++ L K + E H ++ Sbjct: 797 EEQQAEINALRVYKESTENAIAKLESEKAELFKTFTIEHEVEVER----MASLHSDEMKR 852 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 + +E+ ++ L + PE+ R ++ + Sbjct: 853 KEKEIDSLK------AALHKA-RETRTHAQATEPEDSASR--NEEIRATFEKEYKSRMQF 903 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + + R + L + + + E+E+ + + Sbjct: 904 LVKGLEEKKADEIARIKKEAEFDLRMKSKEYEEKIRELEQLLQREENA 951 >gi|171915001|ref|ZP_02930471.1| primary replicative DNA helicase [Verrucomicrobium spinosum DSM 4136] Length = 441 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 12/161 (7%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E +L +I + E EL D + + + ++ + + E++ + Sbjct: 14 AERGVLSCMICRHDVALEAQLELKDEHFYHPANRLIFQTIKTMVAEERPTELPAMSVFFM 73 Query: 543 ERGFGELLKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQ 601 + G L+ ++ A L++ A+ R +Q L L K + + +++ Sbjct: 74 DMG---LMDKIGGPATLAELYAFVPTPAHYDYYRDILKQKLKLRKVIEACTEVLQSVQE- 129 Query: 602 IAQVTAKGEAE-KTAILISILHEVHIQIHQIESQ--EAMIE 639 G+A+ +E+ Q + E ++E Sbjct: 130 ----VGHGDADVLVDAAGERFYEIAAQEQTCQGTFKEKLME 166 >gi|1546825|gb|AAB08430.1| mCASP [Mus musculus] Length = 676 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + + +E++ + + L + E E + ++L L Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280 Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602 ++ + A E I + + Q+ A + R S Q ++E+Q+ Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340 Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 + + E+ + EV +++ ++S E A EG G Sbjct: 341 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 382 >gi|302038730|ref|YP_003799052.1| replicative DNA helicase [Candidatus Nitrospira defluvii] gi|300606794|emb|CBK43127.1| Replicative DNA helicase [Candidatus Nitrospira defluvii] Length = 451 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 6/118 (5%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L L KL + E ++L ++ + + + L D + +K++ + Sbjct: 2 KSLSAVDLTSPKLPPQNVEAEQSVLGAILLDNTAMAKVMELLTDEEFYRTAHRKIYQAML 61 Query: 524 SDFVEQKYFLPEEIHQ------RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR 575 + + + L G L +L + V A ++ Sbjct: 62 ELSDRGEVIDQITLTECLKARSELEAVGGSAYLAELVQVVPTAANIRYHSKIVRDKAL 119 >gi|251777825|ref|ZP_04820745.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082140|gb|EES48030.1| gp49 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 655 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 42/291 (14%), Positives = 108/291 (37%), Gaps = 18/291 (6%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRY 422 + + KL E K + + + ++ + ++ I+D ++ + Sbjct: 260 KLKLQDELYKLNEERSKKQREALKSANKPLD-DIQNNINQVRNNAQDLAYKIQDSERDKE 318 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK---------GPSQRLMQSSLVK 473 + I D + L + + + +Y ++ + G L + +K Sbjct: 319 RNLKYIEDMKKDLENRKLKKQELLNKYHIEDDKEFKFDSSLSSCPHCGREYNLDKIEEIK 378 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELAD-IRYDNNELQKLWSFLFSDFVEQKYF 532 K + +++ ++ +I + + L I+ EL+++ S + E + F Sbjct: 379 NNAEIKFNEQKSKIISKIIADGKTIANDIKSLEAKIQSSEKELEEIKSKIVDL--EGRKF 436 Query: 533 LPEEIHQRLCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + ++ + L ++ + ++ + + + +A I D + L KR L Sbjct: 437 VLDQNLEELEDQKQKIDCVEPIVEGEDELQIKIDGLQAQINDFKSADNSLLKNEKR--TL 494 Query: 592 SRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQIHQIESQEAMIEGF 641 + E+I K + + E ++ L E+ I+I ++E Q+ + E F Sbjct: 495 QEELEDITKTLGKKDTNAELKKRMEELNQEEKELQIKIAELEGQQYLGEEF 545 >gi|170084169|ref|XP_001873308.1| dynein heavy chain protein 1 [Laccaria bicolor S238N-H82] gi|164650860|gb|EDR15100.1| dynein heavy chain protein 1 [Laccaria bicolor S238N-H82] Length = 3456 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 8/135 (5%) Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVR 558 + Q + + ++L + DF+ + + E + + + G L+K QVR Sbjct: 2173 DDFIQRIVNFDTTTQMTRQLRDTMKKDFLSRPSYNFETVQRA--SKACGPLVKWALAQVR 2230 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILI 618 + + E +V+ QA K+ + E+E +IA+ ++ A+LI Sbjct: 2231 FSEILD-KVEPLRNEVQSLEIQAETTKKQASAIIHMIAELESKIARY-----KDEYALLI 2284 Query: 619 SILHEVHIQIHQIES 633 S + +++ +++S Sbjct: 2285 SETQAIKLEMERVQS 2299 >gi|111600321|gb|AAI18919.1| Cingulin-like 1 [Homo sapiens] gi|119597927|gb|EAW77521.1| cingulin-like 1 [Homo sapiens] Length = 1302 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + +L L + + E + + L +D+ Sbjct: 972 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031 Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L R Q ++D +L K + + + + + +S + + Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534 + + L L+ A Q+ + + N +L+ L + E Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591 E L +R E + + Q+ + L E + + Q L R + + Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211 Query: 592 SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639 RQ EE E++I ++ + + ++ ++E + Q++ ++ + + Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261 Score = 42.6 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 +++++L I + ++ + + R+R++ ++ ++H+ + + Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + R L + K+ ++ E L + + + + R ++ E L Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728 Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570 L + + L + Q R ER L L +V +A Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788 Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + +R+ ++A LA + E+ ++ Q + ++ L + ++ Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848 Query: 625 HIQIHQIESQEA 636 QI ++ EA Sbjct: 849 QRQIEDLKGDEA 860 Score = 37.2 bits (84), Expect = 9.3, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++R L + D A+ L + + ED R Sbjct: 699 EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423 TA + + E + D + E R +E K + + + Sbjct: 758 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +R +L Q + + S + + + +K + L Sbjct: 818 AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877 Query: 484 EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 EA + + A+ E ++ E ++L L + +++ + Sbjct: 878 EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 G+ +++L +++ D S T+ + + Y++ + + RQ +E Sbjct: 938 EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995 Query: 598 --IEKQIAQVTAKGEAEKTAILISILHEVHI 626 +E + +++TA ++ ++ L + Sbjct: 996 KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026 >gi|6650548|gb|AAF21899.1|AF107843_1 TATA element modulatory factor [Rattus norvegicus] Length = 817 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 65/175 (37%), Gaps = 7/175 (4%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 G + Q KL+ +E L ++ + ++ A + ++ ++L Sbjct: 613 GKEEVEKQHRENIKKLNSVVERQEKDLGRLQVDMNELEEKSRSTQAAL---DSAYRELTD 669 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 ++ + + + + + EL L++ +A + D+R Q+ Sbjct: 670 LHKANAAKDSEVQEAALRREMKAK--EELSGALEKAQEEARQQQEILALQVGDLRLALQR 727 Query: 581 AL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 A A ++ L + E+++++ + + E + + S + QI +++ Sbjct: 728 AEQAAARKEDYLRHEISELQQRLQEAENR-NQELSQSVSSTTRPLLRQIENLQAT 781 >gi|45382679|ref|NP_990805.1| myosin-10 [Gallus gallus] gi|212452|gb|AAA48988.1| nonmuscle myosin heavy chain [Gallus gallus] Length = 2007 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + EK I+ + E E ++ ELE L + + +++++ Sbjct: 907 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 966 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + ++Q Q + +K + + M+ ++ + Sbjct: 967 ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1026 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537 L+E L+ + E +LA+ L KL + +E++ E+ Sbjct: 1027 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1080 Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q L + + + +L Q+ + + A E +++ + + Sbjct: 1081 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1137 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + E++ QIA++ E+EK + + ++ ++ ++++ Sbjct: 1138 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1185 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L +++ ++++ + Y + ++RLQQ + + +K Sbjct: 1422 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1481 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L + Sbjct: 1482 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1536 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + + +L++ R + ++ Sbjct: 1537 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1582 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q R + + + ++ Q + EK +L+ + E+ ++ Q Sbjct: 1583 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1642 Query: 635 EAM 637 A+ Sbjct: 1643 RAL 1645 >gi|315221391|ref|ZP_07863312.1| ABC transporter, ATP-binding protein [Streptococcus anginosus F0211] gi|315189510|gb|EFU23204.1| ABC transporter, ATP-binding protein [Streptococcus anginosus F0211] Length = 632 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 15/156 (9%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSDAGSTLYLGDYDYYLEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + + T + ++ ++A L +R L + EE+E Q Sbjct: 532 KAELEALREEKATAVEPAQPQSVTNYQLQ--KETQKEARKLARRLEQLEAEIEELEMQTT 589 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQI-ESQEAMI 638 ++T + A L E+ ++ Q+ E QEA + Sbjct: 590 ELTTAMQETNDAS---ELMELQQKLDQLTEQQEAAM 622 >gi|299890875|ref|NP_001177766.1| dynactin subunit 1 isoform 6 [Homo sapiens] Length = 1271 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588 Score = 40.3 bits (92), Expect = 0.97, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323 >gi|46198380|ref|YP_004047.1| hypothetical protein TTC0072 [Thermus thermophilus HB27] gi|46196002|gb|AAS80420.1| hypothetical protein TT_C0072 [Thermus thermophilus HB27] Length = 447 Score = 45.3 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + EL L + K + R E L+ L+ ++R+A A Sbjct: 129 ASRELAALREEVARLEARGKALEEALRAREAEVRAKEEALRALEARLREAEAELAQARKE 188 Query: 571 IVDV----RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + + +AL R L R +E +E++ +++ E A + L E Sbjct: 189 REALLGERERLEADLVALQGRVLDLRRSREVLEEEASRLR-----EALARVRQELAEEER 243 Query: 627 QIHQIESQEAMIEG 640 ++ + Q ++EG Sbjct: 244 RVQGLLVQARVLEG 257 >gi|238754674|ref|ZP_04616027.1| Replicative DNA helicase [Yersinia ruckeri ATCC 29473] gi|238707133|gb|EEP99497.1| Replicative DNA helicase [Yersinia ruckeri ATCC 29473] Length = 468 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 14/142 (9%), Positives = 43/142 (30%), Gaps = 3/142 (2%) Query: 457 RDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ 516 + + KL E ++L L+ + + + + + Sbjct: 4 KKPTNNMTVPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVTSNDFFSRPHR 63 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 ++++ + K + + L ++G L+ + A L T A + Sbjct: 64 RIFTEMQRLLEMSKPIDLITLSESLEQKGD---LESVGGFAYLAELSKNTPSAANIGAYA 120 Query: 577 GYQQALALYKRFRLLSRQKEEI 598 + A+ + ++ + + Sbjct: 121 DIVRERAVVREMISVANEIADA 142 >gi|182417634|ref|ZP_02948953.1| replicative DNA helicase [Clostridium butyricum 5521] gi|237667822|ref|ZP_04527806.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378358|gb|EDT75889.1| replicative DNA helicase [Clostridium butyricum 5521] gi|237656170|gb|EEP53726.1| replicative DNA helicase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 434 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 17/161 (10%), Positives = 50/161 (31%), Gaps = 18/161 (11%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 EA +L + ++ I+ E EL + + + +++ + F E K I + + Sbjct: 14 EAEILGAVFHNGKIMGEVINELEADDFYSTANKTIYTHMCRLFAEGKDINLTLIVNSIGK 73 Query: 544 RGFG---------ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 +++ + ++ V + +A+ + + Sbjct: 74 DNLKSAGGITYISDIITGGLNINPAHYINIVKEKSYRRKVIKELTKAVEKIYDEKNNPYE 133 Query: 595 KEE------IEKQIAQVTAKGEAEKTAILISILHEVHIQIH 629 + + K + + + E L E+ ++ Sbjct: 134 ITDAMVNILLNKNLGKSNIMRDNELFEAT---LLEIDRRLK 171 >gi|194675865|ref|XP_597858.4| PREDICTED: myosin XVIIIA isoform 2 [Bos taurus] gi|297486552|ref|XP_002695716.1| PREDICTED: myosin XVIIIA [Bos taurus] gi|296476878|gb|DAA18993.1| myosin XVIIIA [Bos taurus] Length = 2040 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 37/349 (10%), Positives = 90/349 (25%), Gaps = 31/349 (8%) Query: 311 WKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTA 370 + + + K L + + + D F + Sbjct: 1462 RRFDSELSQAHEEAQREKLQREKLQREKDMLLAEAFSLKQQMEEKDMDIAGFTQKVVSLE 1521 Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 E + S D + + + + + + E L I+ + + + Sbjct: 1522 AELQDISSQESKDEASLAKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEME 1581 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 R++Q K + +++ + + K +L + K K+ ++ E L Sbjct: 1582 RMRQTHSKEMENRDEEVEEARQSCQKK-LKQMEVQLEEEYEDKQKVLREKRELEGKLATL 1640 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKY--FLPEEIHQRLCERGFGE 548 E + L L + ++ +L E F Sbjct: 1641 SDQVNQRDFESEKRLRKDLKRTKALLADAQIMLDHLKNNAPSKREIAQLKNQLEESEFT- 1699 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 V+ E + + + AL ++ L R+K EI+ ++ + Sbjct: 1700 ----CAAAVKARKAMEVEIEDLHLQIDDIAKAKTALEEQLSRLQREKNEIQNRLEEDQED 1755 Query: 609 GE-----------------------AEKTAILISILHEVHIQIHQIESQ 634 + E+ ++ ++SQ Sbjct: 1756 MNELMKKHKAAVAQASRDLAQMNDLQAQLEEANKEKQELQEKLQALQSQ 1804 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 +E+ +E+ ++L ++ L++ + D L S EA I ++ + Sbjct: 1780 LQAQLEEANKEKQELQEKLQ--ALQSQVEFLEQSMVDKSLVSRQ-EAKIRELETRLEFER 1836 Query: 583 ALYKRFRLLSRQKEEIEKQIAQ------VTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 KR L+ + ++ +++ + E E+ L L + ++ ++ +EA Sbjct: 1837 TQVKRLESLASRLKDNMEKLTEERDQRAAAENREKEQNKRLQRQLRDTKEEMGELARKEA 1896 Score = 39.5 bits (90), Expect = 1.6, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 94/316 (29%), Gaps = 38/316 (12%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + ++ VD KR + E+ + + D Sbjct: 1361 GEVADGDTGGEWRLKYERAMREVDFTKKRLQQEFEDKLEVEQQSKRQLERRLGDLQADSD 1420 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNA---RHRDQKGPSQRLMQSSLVKGKL 476 Q ++ + Q+L + +N + + + + KL Sbjct: 1421 ESQRTLQQLKKKCQRLTAELQDTKLHLEGQQVRNHELEKKQRRFDSELSQAHEEAQREKL 1480 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL--FSDFVEQKYFLP 534 ++ RE +L L ++ Q+ ++ DI ++ L + L S + Sbjct: 1481 QREKLQREKDML--LAEAFSLKQQMEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASL 1538 Query: 535 EEIHQRLCE--RGFGELLKQLDRQVRDAGL---------------------WSATTEANI 571 ++ ++L + + ++LD Q + + + Sbjct: 1539 AKVKKQLRDLEAKVKDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMENRDEEV 1598 Query: 572 VDVRQ--------GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + RQ Q Y+ + + R+K E+E ++A ++ + + + Sbjct: 1599 EEARQSCQKKLKQMEVQLEEEYEDKQKVLREKRELEGKLATLSDQVNQRDFESEKRLRKD 1658 Query: 624 VHIQIHQIESQEAMIE 639 + + + M++ Sbjct: 1659 LKRTKALLADAQIMLD 1674 >gi|62739772|gb|AAH93827.1| Cingulin-like 1 [Homo sapiens] gi|85567512|gb|AAI12050.1| Cingulin-like 1 [Homo sapiens] Length = 1302 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 39/290 (13%), Positives = 95/290 (32%), Gaps = 10/290 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + Y + +L L + + E + + L +D+ Sbjct: 972 QNQLDEYKEKNRRELAEMQRQLKEKTLEAEKSRLTAMKMQDEMRLMEEELRDYQRAQDEA 1031 Query: 420 L--RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 L R Q ++D +L K + + + + + +S + + Sbjct: 1032 LTKRQLLEQTLKDLEYELEAKSHLKDDRSRLVKQMEDKVSQLEMELEEERNNSDLLSERI 1091 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF---VEQKYFLP 534 + + L L+ A Q+ + + N +L+ L + E Sbjct: 1092 SRSREQMEQLRNELLQERAARQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQM 1151 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY---QQALALYKRFRLL 591 E L +R E + + Q+ + L E + + Q L R + + Sbjct: 1152 EARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQVDDEHLSLTDQKDQLSLRLKAM 1211 Query: 592 SRQKEEIEKQIAQVTAKGEA-EKTAILISILHE-VHIQIHQIESQEAMIE 639 RQ EE E++I ++ + + ++ ++E + Q++ ++ + + Sbjct: 1212 KRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLKK 1261 Score = 42.6 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 87/252 (34%), Gaps = 19/252 (7%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 +++++L I + ++ + + R+R++ ++ ++H+ + + Sbjct: 614 EQKSKLTIEVAELQRQLQLEVKNQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLE 673 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL 518 + R L + K+ ++ E L + + + + R ++ E L Sbjct: 674 ESEGELRKNLEELFQVKMEREQHQTEIRDLQ-----DQLSEMHDELDSAKRSEDREKGAL 728 Query: 519 WSFLFSDFVEQKYFLPEEIHQ----RLCERGFGELLKQLDRQVRDAGLW----SATTEAN 570 L + + L + Q R ER L L +V +A Sbjct: 729 IEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEEVSSHDQEMDKLKEQYDAE 788 Query: 571 IVDVRQGYQQA------LALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + +R+ ++A LA + E+ ++ Q + ++ L + ++ Sbjct: 789 LQALRESVEEATKNVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEELERRVAQL 848 Query: 625 HIQIHQIESQEA 636 QI ++ EA Sbjct: 849 QRQIEDLKGDEA 860 Score = 37.2 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 102/331 (30%), Gaps = 13/331 (3%) Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365 ++R L + D A+ L + + ED R Sbjct: 699 EIRDLQDQLSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLR-KRE 757 Query: 366 YGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLK--NCINHIKDQKLRYY 423 TA + + E + D + E R +E K + + + Sbjct: 758 RELTALKGALKEEVSSHDQEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQDQ 817 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 +R +L Q + + S + + + +K + L Sbjct: 818 AGTEMRVKLLQEENEKLQGRSEELERRVAQLQRQIEDLKGDEAKAKETLKKYEGEIRQLE 877 Query: 484 EAAL------LLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 EA + + A+ E ++ E ++L L + +++ + Sbjct: 878 EALVHARKEEKEAVSARRALENELEAAQGNLSQTTQEQKQLSEKLKEESEQKEQLRRLKN 937 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 G+ +++L +++ D S T+ + + Y++ + + RQ +E Sbjct: 938 EMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKE--KNRRELAEMQRQLKE 995 Query: 598 --IEKQIAQVTAKGEAEKTAILISILHEVHI 626 +E + +++TA ++ ++ L + Sbjct: 996 KTLEAEKSRLTAMKMQDEMRLMEEELRDYQR 1026 >gi|83591750|ref|YP_425502.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170] gi|83574664|gb|ABC21215.1| DnaB helicase [Rhodospirillum rubrum ATCC 11170] Length = 507 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 3/131 (2%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + +L E ALL ++ + +L++ L + + ++ Sbjct: 8 AQNDPSAGPAAEATRLPPANIEAEQALLGAILTNNRVLEKVGDFLRPAHFSHPAHGAIYE 67 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + P + L L+++ A L +A + Sbjct: 68 ACVTLTERGHLANPVTLAPYL---DHRTELEEVGGARYLAQLVNAVVTIINAEDYGTLVH 124 Query: 581 ALALYKRFRLL 591 L L + L Sbjct: 125 DLFLRRELIAL 135 >gi|13259510|ref|NP_004073.2| dynactin subunit 1 isoform 1 [Homo sapiens] gi|17375490|sp|Q14203|DCTN1_HUMAN RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa dynein-associated polypeptide; AltName: Full=DAP-150; Short=DP-150; AltName: Full=p135; AltName: Full=p150-glued gi|5915904|gb|AAD55811.1| dynactin 1 p150 isoform [Homo sapiens] Length = 1278 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 0.99, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|299890871|ref|NP_001177765.1| dynactin subunit 1 isoform 5 [Homo sapiens] Length = 1236 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|291245067|ref|XP_002742413.1| PREDICTED: myosin, heavy chain 10, non-muscle-like [Saccoglossus kowalevskii] Length = 1964 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 23/260 (8%) Query: 378 SLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQ 437 + + E R D L K ++D + + + R +L Sbjct: 913 AKKQELEEILHDLEARIEEEEDRNQHLVNEKKKMTITVQDLEEQLEEEEQARQKLHLDKV 972 Query: 438 KYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK-GKLSKKPSLREAALLLTLINHPA 496 + + + ++ ++ + + + + L + H A Sbjct: 973 ALDAKVKKMDEDLALLEDNNAKITKEKKSIEDRFNEVSRQLAEEEDKAKQLSKLKVKHEA 1032 Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + + + L EL+KL L ++ + E L +L +Q Sbjct: 1033 NIGDLDRRLKKEEKLRQELEKLRRKLETEISD-----------------LKEQLAELKQQ 1075 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 + + A TE ++ Q + + E+E Q+ + +AEK A Sbjct: 1076 LLEVQTQLARTE---EELNQALARCDEEAAAKVAAQKALRELENQLQETEEDLQAEKEAR 1132 Query: 617 LISILH--EVHIQIHQIESQ 634 + ++ ++ ++++ Sbjct: 1133 NKAEKQKRDLGEELEALKTE 1152 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 90/306 (29%), Gaps = 30/306 (9%) Query: 350 FVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDM--LWKRETENRSFNTPDERAELEIH 407 + + D + +R +KL + V ++ ++ S D + + Sbjct: 1624 YHDMQSQLDMSNKVRDDSIKQLKKLQAQMKDCVHDLEEARQSRDHLSHVAKDNEKKAKHL 1683 Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNAR------------ 455 + +D + + +L + + +G + R Sbjct: 1684 EAELMQLHEDLASAERLRKQAENERDELADEISSNTAGRSALADEKRRLEQRIQTLEEDL 1743 Query: 456 --HRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 + + + + E + L N +L+ Q +EL Sbjct: 1744 DEEQSNVEILVDKERKMGSQVEQLTTELAAERSSTQRLENSRMLLERQNKELKAKL---Q 1800 Query: 514 ELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD 573 EL+ + + Q + ++L + + + L +A Sbjct: 1801 ELEVVAKTRSKATINQLEIKIANLEEQLEQETKDRHAAHKSNRRMEKKLKELVMQAEDER 1860 Query: 574 VR-QGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAK---------GEAEKTAILISILH 622 + Y++ + + R + L RQ +E E++ + A + E L ++ Sbjct: 1861 RQGDQYKEQVDKVNSRVKGLKRQLDEAEEEFTRANASKRKLQRDLDDQIEANESLTREIN 1920 Query: 623 EVHIQI 628 ++ ++ Sbjct: 1921 QLKNKL 1926 >gi|291239605|ref|XP_002739711.1| PREDICTED: kinesin family member 20A-like [Saccoglossus kowalevskii] Length = 2595 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 95/291 (32%), Gaps = 17/291 (5%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + ++ + S + + K + Sbjct: 1379 QDLHDVHSSEEVLLEKTRKMNQLECSIEVAESLVSDLKKELAEVKLNQTSSEEKVTKYEA 1438 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 + +++ + + I ++ + + + S + ++ Sbjct: 1439 EITDLQKQVKNLENVIKDEEIKKNDLKNSLESTETKAKKMENASVEKEEKLERLENELEQ 1498 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF--VEQKYFLPEEI 537 REAALL L+++ +EL ++ ++EL++ L + E+K E Sbjct: 1499 LKKREAALLS----ESEHLKDEEKELQQLKIKDSELKREVKILTKNLKKAEEKASALEHE 1554 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV-RQGYQQALALYKRFRLLSRQKE 596 ++L E+ ++ Q++ + A + N + + + L K+ + L + Sbjct: 1555 VKQLQEQ-VKQVESQVEETKKSAEKQQKDFKMNSEERGIKYEAEITDLQKQLKDLENMIK 1613 Query: 597 E-------IEKQI--AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 + ++ + + AK + + L ++ Q++ +EA + Sbjct: 1614 DEEIKKNDLKNSLESTEAKAKRMEDASIEKEEKLERFENELEQLKKREAAL 1664 >gi|118601017|ref|NP_031861.2| dynactin subunit 1 isoform 1 [Mus musculus] Length = 1281 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.2 bits (84), Expect = 9.0, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L + +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|114578181|ref|XP_001156821.1| PREDICTED: dynactin 1 isoform 17 [Pan troglodytes] gi|332813454|ref|XP_001156762.2| PREDICTED: dynactin subunit 1 isoform 16 [Pan troglodytes] Length = 1253 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|110815859|ref|NP_941004.2| protein CASP isoform b [Mus musculus] Length = 676 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 101 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 160 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 161 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 220 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + + +E++ + + L + E E + ++L L Sbjct: 221 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 280 Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602 ++ + A E I + + Q+ A + R S Q ++E+Q+ Sbjct: 281 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 340 Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 + + E+ + EV +++ ++S E A EG G Sbjct: 341 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 382 >gi|73980499|ref|XP_866328.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 12 [Canis familiaris] Length = 1274 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323 >gi|297266319|ref|XP_001107877.2| PREDICTED: dynactin subunit 1-like isoform 1 [Macaca mulatta] Length = 1236 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|223040107|ref|ZP_03610387.1| replicative DNA helicase [Campylobacter rectus RM3267] gi|222878584|gb|EEF13685.1| replicative DNA helicase [Campylobacter rectus RM3267] Length = 469 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 9/98 (9%), Positives = 31/98 (31%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L ++I L E + ++ + ++ + E + +L Sbjct: 17 ERAILASIIYSADNLSEIFDIISPFDFYLRAHGDVYDAMVKCLNENLPVETGFLKTKLGS 76 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + ++ ++ + E +++ + Sbjct: 77 KFDENVMSEIIGTNSILDVKKYANEIKEKSIKRSLVKI 114 >gi|195114526|ref|XP_002001818.1| GI17055 [Drosophila mojavensis] gi|193912393|gb|EDW11260.1| GI17055 [Drosophila mojavensis] Length = 2153 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 30/261 (11%), Positives = 74/261 (28%), Gaps = 22/261 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1763 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGKAEALRMKKKLEADINELEIALDHA 1822 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1823 NKANAEAQKNIKRYQQQLKDIQTALEEEQRARDDAREQLGISER-------RANALQNEL 1875 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCER------GFGELL 550 + + + ++ L + ++L ELL Sbjct: 1876 EESRTLLEQADRGRRQAEQELADAHEQLNEVSAQNASISAAKRKLESELQTLHSDLDELL 1935 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607 + A ++R A K + L +Q +E++ ++ + A Sbjct: 1936 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 1995 Query: 608 KGEAEKTAILISILHEVHIQI 628 KG + L + E+ ++ Sbjct: 1996 KGGKKAIQKLEQRVRELENEL 2016 >gi|119620093|gb|EAW99687.1| dynactin 1 (p150, glued homolog, Drosophila), isoform CRA_d [Homo sapiens] Length = 1265 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 227 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 286 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 287 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 346 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 347 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 406 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 407 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 466 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 467 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 526 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 527 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 582 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 211 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 270 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 271 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 330 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 331 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 384 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 385 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 428 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 203 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 262 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 263 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 317 >gi|114578173|ref|XP_001156479.1| PREDICTED: dynactin subunit 1 isoform 11 [Pan troglodytes] Length = 1271 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323 >gi|149234198|ref|XP_001474905.1| PREDICTED: rootletin [Mus musculus] Length = 1710 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 99/325 (30%), Gaps = 53/325 (16%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +D S K A + + + + E L+ + ++ Sbjct: 954 KDTLSLSLAEEKEAAARWMEQQK-----ELLTRSAADREALQGEIQNLKQERDESLLQLE 1008 Query: 417 DQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + + L ++L + + + + +++ V+ Sbjct: 1009 HEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQF 1068 Query: 475 KLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + REA L ++ +E + A + + L +L L + + Sbjct: 1069 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESR 1128 Query: 530 KYFLPEEIHQR--LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + E + R L + ++L+ + ++R + + +A++ ++ +Q L L + Sbjct: 1129 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1188 Query: 587 ---------------RFRLLSRQKEEIEKQIAQ-----------------------VTAK 608 R + L R + + +++ + Sbjct: 1189 EAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1248 Query: 609 GEAEKTAILISILHEVHIQIHQIES 633 +A+ + E+ Q+ + ++ Sbjct: 1249 RDAQHRQKNLQESLELQRQVAEAQA 1273 >gi|77163758|ref|YP_342283.1| DnaB helicase [Nitrosococcus oceani ATCC 19707] gi|254436137|ref|ZP_05049644.1| replicative DNA helicase [Nitrosococcus oceani AFC27] gi|76882072|gb|ABA56753.1| primary replicative DNA helicase [Nitrosococcus oceani ATCC 19707] gi|207089248|gb|EDZ66520.1| replicative DNA helicase [Nitrosococcus oceani AFC27] Length = 472 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 48/165 (29%), Gaps = 6/165 (3%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 ++ E ++L L+ ++ L + + + L+ + + + Sbjct: 18 RIPPHSMEAEQSVLGGLLLDNQAWEQIADILGSEDFYRQDHRLLFLSIGEMLEQSRPCDV 77 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L + L+ A L + + Y + + R L R Sbjct: 78 VTLSEWLKNKRL------LEETGGLAYLTNLARNTPTAANIKAYAEVVRERSVLRQLIRV 131 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 +I Q + E + E+ Q + + I+ Sbjct: 132 GTDIAGSAYQPEGRESGELLDEAEKRVFEIAEQGARGQRSFVNIK 176 >gi|62471805|ref|NP_001014552.1| zipper, isoform D [Drosophila melanogaster] gi|61678342|gb|AAX52687.1| zipper, isoform D [Drosophila melanogaster] Length = 2016 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1649 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1708 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1709 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1768 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1769 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1825 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1826 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1885 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1886 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1945 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1946 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1984 >gi|74746874|sp|Q5VT25|MRCKA_HUMAN RecName: Full=Serine/threonine-protein kinase MRCK alpha; AltName: Full=CDC42-binding protein kinase alpha; AltName: Full=DMPK-like alpha; AltName: Full=Myotonic dystrophy kinase-related CDC42-binding kinase alpha; Short=MRCK alpha; Short=Myotonic dystrophy protein kinase-like alpha gi|55665003|emb|CAH71185.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] gi|55666437|emb|CAH71336.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] gi|56206215|emb|CAI19109.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] Length = 1732 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|309264118|ref|XP_982250.2| PREDICTED: rootletin [Mus musculus] Length = 1710 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 33/325 (10%), Positives = 99/325 (30%), Gaps = 53/325 (16%) Query: 357 EDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIK 416 +D S K A + + + + E L+ + ++ Sbjct: 954 KDTLSLSLAEEKEAAARWMEQQK-----ELLTRSAADREALQGEIQNLKQERDESLLQLE 1008 Query: 417 DQKLRYYYSQAIRDRL--QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKG 474 + + + L ++L + + + + +++ V+ Sbjct: 1009 HEMQQALSLKDAEKSLLSKELSGAHRELERARQEAQNQQVQAEATVTTMTKELRTLQVQF 1068 Query: 475 KLSKKPSLREAALLL-----TLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + REA L ++ +E + A + + L +L L + + Sbjct: 1069 EEAISTHQREADTLREKLREIAAERSSVRREAEELQAQLNVAHERLAELRQELQASEESR 1128 Query: 530 KYFLPEEIHQR--LCERGFG-ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + E + R L + ++L+ + ++R + + +A++ ++ +Q L L + Sbjct: 1129 EGLQREALGARRALEDEVQEKDVLQHSNTELRASIHRAEQEKASLKRSKEEQEQKLLLLQ 1188 Query: 587 ---------------RFRLLSRQKEEIEKQIAQ-----------------------VTAK 608 R + L R + + +++ + Sbjct: 1189 EAQVAAQKEAYELRTRLQELERAQRDTRRKLQERHRQVRTLEAENQRKRQEVSDLQAQVS 1248 Query: 609 GEAEKTAILISILHEVHIQIHQIES 633 +A+ + E+ Q+ + ++ Sbjct: 1249 RDAQHRQKNLQESLELQRQVAEAQA 1273 >gi|297280638|ref|XP_001088134.2| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1 [Macaca mulatta] Length = 1732 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV + E ++ + ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|223462007|gb|AAI36334.1| CDC42BPA protein [Homo sapiens] Length = 1699 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|148687364|gb|EDL19311.1| cut-like 1 (Drosophila), isoform CRA_d [Mus musculus] Length = 680 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 105 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 164 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 165 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 224 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + + +E++ + + L + E E + ++L L Sbjct: 225 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 284 Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602 ++ + A E I + + Q+ A + R S Q ++E+Q+ Sbjct: 285 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 344 Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 + + E+ + EV +++ ++S E A EG G Sbjct: 345 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 386 >gi|297266317|ref|XP_001108486.2| PREDICTED: dynactin subunit 1-like isoform 9 [Macaca mulatta] Length = 1278 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|73980503|ref|XP_866352.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 13 [Canis familiaris] Length = 1281 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.0, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|24762818|ref|NP_726506.1| zipper, isoform B [Drosophila melanogaster] gi|21645103|gb|AAM70805.1| zipper, isoform B [Drosophila melanogaster] Length = 2011 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1644 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1703 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1704 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1763 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1764 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1820 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1821 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1880 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1881 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1940 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1941 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1979 >gi|1945080|dbj|BAA19691.1| myosin [Mus musculus] Length = 1938 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 100/287 (34%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + A EK +++ + E+E ++ ELE L +++++ Sbjct: 877 ELEQKHTQLAEEKTLLQEQLQAETELYAESEEMRVRLAAKKQELEEILHEMEARLEEEED 936 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R QA R ++ Q + +K + + ++ ++ Sbjct: 937 RRQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531 +E LL + + LA+ L KL + S+ E+ Sbjct: 997 LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050 Query: 532 FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E++ ++L F E + L Q+ + + A E + + +A + Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 ++ E+E I+ + ++E+ A + ++ ++ ++++ Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154 >gi|134299977|ref|YP_001113473.1| hypothetical protein Dred_2131 [Desulfotomaculum reducens MI-1] gi|134052677|gb|ABO50648.1| hypothetical protein Dred_2131 [Desulfotomaculum reducens MI-1] Length = 675 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 18/124 (14%) Query: 4 PRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG--- 60 ++F+ + I + G+ +++ K+ C FH++ S + Sbjct: 284 NQEFVDYIRKEINL----GELLEFKYPKSIR--------CIFHEDNNNSASIFQADDGAW 331 Query: 61 FYYCFSCHVKGDHLSFLSALLGC--SFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI 118 Y CF C V + L + +LG S ++ + + I + + + + E+KE + ++ Sbjct: 332 IYKCFGCGVTYNILG-VIEVLGKFRSRPKAYRFIREIFNLEIQETEWQKEQKEILLENMK 390 Query: 119 RLIE 122 L Sbjct: 391 VLNN 394 >gi|315223252|ref|ZP_07865113.1| hypothetical protein HMPREF0813_02003 [Streptococcus anginosus F0211] gi|315187684|gb|EFU21438.1| hypothetical protein HMPREF0813_02003 [Streptococcus anginosus F0211] Length = 2016 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%), Gaps = 13/89 (14%) Query: 5 RDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYY 63 ++ + I ++ Q ++ +R + + HD S +K + Sbjct: 28 KERVDLARSR-DILDVAEQLGMELERAGRDYRWKE-------HD----SLVITPNKNVWK 75 Query: 64 CFSCHVKGDHLSFLSALLGCSFIESVQRL 92 FS GD ++ + + +F +++ L Sbjct: 76 WFSRDQGGDVIALVETIKEINFNQAIDYL 104 >gi|297280636|ref|XP_002801950.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 2 [Macaca mulatta] Length = 1754 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV + E ++ + ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|224009922|ref|XP_002293919.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970591|gb|EED88928.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 1532 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 12/131 (9%) Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRL-----CERGFGELLKQLD--RQVRDAGLWSATTEA 569 +L + L EQ ++ ++L E+ +L+ R L Sbjct: 606 RLRAALIR-LREQSEQERNDLQRQLKALQSDSSSKEEMQAELEALRSSHAKTLTEVKELK 664 Query: 570 NIVDVRQGYQQALA-LYKRFRLLSRQKEEIEKQIAQVTAKGE-AEKTAILISILHEVHIQ 627 I+D ++ + L + L ++ E+E+ I ++ E A + + E+ + Sbjct: 665 EIIDQTTSLEETIETLSDKMWSLEQENAELERTIRELEESAEIAAELEEVQGE--ELKMV 722 Query: 628 IHQIESQEAMI 638 + +E ++A++ Sbjct: 723 MRDLEGRDALV 733 >gi|114578187|ref|XP_515556.2| PREDICTED: dynactin subunit 1 isoform 18 [Pan troglodytes] Length = 1236 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|114578169|ref|XP_001156535.1| PREDICTED: dynactin subunit 1 isoform 12 [Pan troglodytes] Length = 1278 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.9 bits (86), Expect = 5.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|114578185|ref|XP_001156426.1| PREDICTED: dynactin 1 isoform 10 [Pan troglodytes] Length = 1199 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 5.8, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|11067|emb|CAA46548.1| myosin II heavy chain [Schistosoma mansoni] Length = 528 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 88/244 (36%), Gaps = 22/244 (9%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 194 QRGDMEQRIKELEERLADEEDQAANLTEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 253 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +QS + + ++ L + + L N L KL Sbjct: 254 KDNEIRTLQSEMAQQDEMIGKLNKDKKNLE------EENKRTQEALQAEEDKVNHLNKLK 307 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 308 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGDLKATQETVDDLERVKRDLEEQLRRKE 367 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626 A I + ++ L + L R+ +E++ +I ++ EAE+ A + ++ Sbjct: 368 AEIGGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 424 Query: 627 QIHQ 630 ++ + Sbjct: 425 ELEE 428 >gi|4139121|gb|AAD03694.1| dynactin 1 [Homo sapiens] Length = 1261 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 223 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 282 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 283 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 342 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 343 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 402 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 403 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 462 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 463 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 522 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 523 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 207 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424 Score = 37.9 bits (86), Expect = 5.7, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313 >gi|11561808|gb|AAC83689.2| 101 kDa heat shock protein [Triticum aestivum] Length = 918 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + + Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447 Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618 + D+R Q Y++ R L +++EE++ + + + + + A L Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507 Query: 619 SILHEVHIQIHQIESQ 634 L E+ I ++E + Sbjct: 508 GALQEIDAAIAKLEGE 523 >gi|68492200|ref|XP_710120.1| likely vesicular transport factor Uso1p [Candida albicans SC5314] gi|46431250|gb|EAK90848.1| likely vesicular transport factor Uso1p [Candida albicans SC5314] Length = 1880 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 30/245 (12%), Positives = 68/245 (27%), Gaps = 16/245 (6%) Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 I + Q + + + D Sbjct: 807 IKARTKESETISGPDQQE--LQEALKKGNTSESTLKQLKEKLDSTEQAKKKLEDGINNMT 864 Query: 465 R-LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL- 522 R L K + + RE ++ ++ ++ NNE ++ + L Sbjct: 865 RDLFHLKKSKSEAETQIKQREREFKNLTYEFENTKKDYELQINNLNKSNNEFKQKINELS 924 Query: 523 --FSDFVEQKYFLPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 E F +++ ++L + L+ +L + + + Sbjct: 925 KKIESLTEDNKFNAKQLEEKLRDTEENNEHLMDKLRSASVAYNDLKKAKSESEEETVKAK 984 Query: 579 QQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILISILHEVHIQIHQI 631 ++ L + L ++ +E +E Q+ +T EK L L + +I Sbjct: 985 EELETLTSKIDNLEKELKEQQSKKNELEGQLQNITDSTN-EKFKELEDELKSIKKSNKEI 1043 Query: 632 ESQEA 636 SQ + Sbjct: 1044 SSQNS 1048 >gi|311893358|ref|NP_001185795.1| dynactin subunit 1 isoform 2 [Mus musculus] Length = 1264 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 221 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 280 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 281 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 340 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 341 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 400 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 401 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 460 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 461 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 520 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 521 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 207 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424 Score = 37.2 bits (84), Expect = 9.2, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L + +A + ++ + Q + ++ L R+ Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313 >gi|308468395|ref|XP_003096440.1| hypothetical protein CRE_19341 [Caenorhabditis remanei] gi|308243027|gb|EFO86979.1| hypothetical protein CRE_19341 [Caenorhabditis remanei] Length = 2619 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 36/337 (10%), Positives = 98/337 (29%), Gaps = 28/337 (8%) Query: 308 RLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYG 367 +K + D ++ + + D S + Sbjct: 628 ENRFKYVQHKWTEWQMDTNSTTKVESVMEEIQMWQTD-----VLEFIGKVDNSSVTKKEE 682 Query: 368 KTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQA 427 +K I DM + N +E+ L + ++IK + + + Sbjct: 683 VEEIQKRISSFKNAADMHKTTLETLKEENKNEEQISRINVLIDKNDYIKTRLDQLSHKVE 742 Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL 487 + L+ + I + N Q ++ L + + L Sbjct: 743 LTSLLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEHLRRKIEDLKVEVEKKSEHL 802 Query: 488 LLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGF 546 E + L+ + + + + EQ E+ ++L Sbjct: 803 ------------EACKTLSQNETFQTQLHKTIQN------QEQIRLTTIELQEKLEISKL 844 Query: 547 GELLKQL----DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 +++++ + + + T ANI + + + L + S + +E++K Sbjct: 845 IRVVQEIQMWQEEAIEIIRMLDRTQPANIQEANELIDRVHDLQQTIEHKSSRIQEVKKMS 904 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + E+ + L + +++ + Q+ +++ Sbjct: 905 QVPEFVHKMEEVEHVQEQLKHLTVELEEKLEQQKLVK 941 >gi|291548124|emb|CBL21232.1| hypothetical protein CK1_34640 [Ruminococcus sp. SR1/5] Length = 276 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 4/98 (4%) Query: 70 KG-DHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLI-RLIEVATDF 127 G L +L + G SF+E+V+ LA A + P+ + + L + + Sbjct: 8 GGRSALDYLIKVRGYSFLEAVELLAERANIQPPLFVSENVP--MKKQLLFPKKNQDDQKV 65 Query: 128 FHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165 + L DK + + E G + + + Sbjct: 66 IAYLLGRGIDKEIIQFCLESGRVYESAFHHNVVFVGMD 103 >gi|303321544|ref|XP_003070766.1| hypothetical protein CPC735_038850 [Coccidioides posadasii C735 delta SOWgp] gi|240110463|gb|EER28621.1| hypothetical protein CPC735_038850 [Coccidioides posadasii C735 delta SOWgp] Length = 1252 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 87/249 (34%), Gaps = 10/249 (4%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 E + + R+ LE + N ++D+ + + Q ++ R + Sbjct: 565 EELKKANDELTLVRSSLEQQIANLQRTMQDE--KASHLQELKRREMLKSDALAAQKEELQ 622 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA- 506 ++++ + DQ + + + G+ + + E + + + E +L Sbjct: 623 GHFQEMKKKDDQAAAEKLRAREEELYGERDQLKAEWEQQMAALNKSKDDMAAEYEGKLDT 682 Query: 507 -DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + + +L + +Q + + +L + ++ + Sbjct: 683 KKTELETKQ-GELDAKQAELQAKQSELDARQEELNATKSDLEAKQAELVDRQKELEEKQS 741 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 EA ++ + + L + L ++ E+E++ ++ +K + + L EV Sbjct: 742 EVEAKQEEINRLKSE---LESKIAELEDKRRELEQKQGELESK--QTELQAIQDELQEVK 796 Query: 626 IQIHQIESQ 634 ++ + +SQ Sbjct: 797 AELEEKKSQ 805 >gi|242310225|ref|ZP_04809380.1| replicative DNA helicase [Helicobacter pullorum MIT 98-5489] gi|239523522|gb|EEQ63388.1| replicative DNA helicase [Helicobacter pullorum MIT 98-5489] Length = 485 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 17/146 (11%), Positives = 47/146 (32%), Gaps = 18/146 (12%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L ++ P L + L+ + Q +++ + E I ++ + Sbjct: 6 ERAVLSSIFFDPEQLDNVAEILSPEDFLYTPNQNIFAAMLELRKLDMPIDEEFILKKSTK 65 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 R + + + I D+ + + R+ + +I Sbjct: 66 S----------RPISQEEILNILATNPISDLNSYINEI-----KEDSTKRKLHSLAMKIN 110 Query: 604 QVTAKGE---AEKTAILISILHEVHI 626 + + + + + L S L+++ Sbjct: 111 EASNEADHPVKDIIDYLQSELYKITN 136 >gi|242014184|ref|XP_002427775.1| myosin-9, putative [Pediculus humanus corporis] gi|212512229|gb|EEB15037.1| myosin-9, putative [Pediculus humanus corporis] Length = 1968 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 40/300 (13%), Positives = 97/300 (32%), Gaps = 18/300 (6%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELE 405 +V L ++ + + Y EK+ ++ ++ E E + ELE Sbjct: 858 RQVRENLETQLKSALEYETKYKAAVEEKIQLQEQLQAEVELCAEAEEMRVRLAARKQELE 917 Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQR 465 L + I++++ R A + +LQ Q + +K + Q + Sbjct: 918 EILHDLEARIEEEEERSNSLSAEKKKLQINIQDLEEQLEEEEAARQKIQLEKVQCDAKIK 977 Query: 466 LMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW------ 519 ++ L + + + +E +L + Q LA+ L KL Sbjct: 978 KLEEELALSEDTNQKLTKEKKILE------ERAADLAQALAEEEEKAKHLAKLKTKHEAT 1031 Query: 520 -----SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 L D +++ + E L + QV + L E + Sbjct: 1032 IADLEEKLLKDNTQRQEMDRNKRRIEAEVSDLKEQLNERKTQVEELQLQLGKREEELSLA 1091 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 + A + + R+ E ++ + +A ++ +++ ++ ++++ Sbjct: 1092 LMKIDEEGAGKAQVQKAIRELESQVAELQEDLEAEKAARSKAE-KQKRDLNEELEALKNE 1150 >gi|119590212|gb|EAW69806.1| CDC42 binding protein kinase alpha (DMPK-like), isoform CRA_a [Homo sapiens] Length = 1718 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|29373940|emb|CAD57745.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] gi|119590213|gb|EAW69807.1| CDC42 binding protein kinase alpha (DMPK-like), isoform CRA_b [Homo sapiens] Length = 1719 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|212451|gb|AAA48987.1| nonmuscle myosin heavy chain [Gallus gallus] Length = 1997 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + EK I+ + E E ++ ELE L + + +++++ Sbjct: 897 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 956 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + ++Q Q + +K + + M+ ++ + Sbjct: 957 ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1016 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537 L+E L+ + E +LA+ L KL + +E++ E+ Sbjct: 1017 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1070 Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q L + + + +L Q+ + + A E +++ + + Sbjct: 1071 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1127 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + E++ QIA++ E+EK + + ++ ++ ++++ Sbjct: 1128 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1175 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L +++ ++++ + Y + ++RLQQ + + +K Sbjct: 1412 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1471 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L + Sbjct: 1472 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1526 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + + +L++ R + ++ Sbjct: 1527 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1572 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q R + + + ++ Q + EK +L+ + E+ ++ Q Sbjct: 1573 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1632 Query: 635 EAM 637 A+ Sbjct: 1633 RAL 1635 >gi|13431676|sp|O08638|MYH11_MOUSE RecName: Full=Myosin-11; AltName: Full=Myosin heavy chain 11; AltName: Full=Myosin heavy chain, smooth muscle isoform; AltName: Full=SMMHC gi|1945078|dbj|BAA19690.1| myosin [Mus musculus] Length = 1972 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 100/287 (34%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + A EK +++ + E+E ++ ELE L +++++ Sbjct: 877 ELEQKHTQLAEEKTLLQEQLQAETELYAESEEMRVRLAAKKQELEEILHEMEARLEEEED 936 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R QA R ++ Q + +K + + ++ ++ Sbjct: 937 RRQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 996 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531 +E LL + + LA+ L KL + S+ E+ Sbjct: 997 LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1050 Query: 532 FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E++ ++L F E + L Q+ + + A E + + +A + Sbjct: 1051 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1107 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 ++ E+E I+ + ++E+ A + ++ ++ ++++ Sbjct: 1108 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1154 >gi|51338816|sp|Q99323|MYSN_DROME RecName: Full=Myosin heavy chain, non-muscle; AltName: Full=Myosin II; AltName: Full=Non-muscle MHC; AltName: Full=Zipper protein gi|1572481|gb|AAB09049.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster] Length = 2057 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1690 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1749 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1750 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1809 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1810 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1866 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1867 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1926 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1927 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1986 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1987 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 2025 >gi|315579062|gb|EFU91253.1| hypothetical protein HMPREF9511_00768 [Enterococcus faecalis TX0630] Length = 496 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 10/86 (11%) Query: 43 CPFHDEKTPSFHCNDSK---GFYYCFS--CHVKGDHLSFLSALLGC-SFIESVQRLAAIA 96 C FHD+ PS K ++C S C V D + + +L S +E+ L Sbjct: 103 CLFHDDHNPSASIFTGKSGHSIFHCHSSNCGVSVDFIGVVMLILKKDSRVEAFNWLLE-- 160 Query: 97 GVPLPVVDPKIEKKEKIQTDLIRLIE 122 + L + K+E L +E Sbjct: 161 NLDLYPTHFRKLKEESK--VLFDTLE 184 >gi|256052226|ref|XP_002569676.1| hypothetical protein [Schistosoma mansoni] gi|227284382|emb|CAY16924.1| WD-repeat protein, putative [Schistosoma mansoni] Length = 1331 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 27/215 (12%), Positives = 72/215 (33%), Gaps = 10/215 (4%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 Y + + + +Q + + + + +Q Q + S + Sbjct: 842 YEKQLNN-IQLNHENLLNNTINNYELKLNEKNQKINELINQLKQQLNDHDLIKSLIEHIN 900 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 + +L I + + E+ ++ N+L + L + ++ + Sbjct: 901 DQEILQLNIKYKKLFNEELNLNKKLK---NDLNLIQKQLINLQKIIDQLNLDKNKYNIEI 957 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA----LALYKRFRLLSRQKEEIE 599 + ++ L++ +++ + I D + L K +L + +E++ Sbjct: 958 QKLNTIIFNLEKDLQNLHKDIQERDDTIQDKEKRILDLKKKNQELEKFKYVLDYKIKELK 1017 Query: 600 KQI--AQVTAKGEAEKTAILISILHEVHIQIHQIE 632 +QI + K E+ + + L H Q Q+E Sbjct: 1018 QQIEPRENDIKNYKEQIQEMETELQRFHKQNDQLE 1052 >gi|222100676|ref|YP_002535244.1| ATPase AAA-2 domain protein [Thermotoga neapolitana DSM 4359] gi|221573066|gb|ACM23878.1| ATPase AAA-2 domain protein [Thermotoga neapolitana DSM 4359] Length = 795 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 21/223 (9%), Positives = 73/223 (32%), Gaps = 18/223 (8%) Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKK-----NARHRDQKGPSQRLMQSSLVKGKLSK 478 Y +RL+ + + + + + A + + +++ +L +G++ Sbjct: 246 YRGEFEERLKSFLDEVMKQKEKTILFIDEIHTIVGAGAAEGAMDAANMLKPALARGEIRV 305 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIH 538 + + A+ + L E ++ L + E Sbjct: 306 IGATTLDEYRKHIEKDKALARRFQPVLVKEP-SVEETIEILKGLKRVYEEHHKV------ 358 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 ++ + K R + D + I + + + + + + +E+ Sbjct: 359 -KIEDEAIEAAAKLSARYITDR----FLPDKAIDLLDEAAARVKLGFSKQEKDEARLQEL 413 Query: 599 EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ-EAMIEG 640 E++I ++ + + ++ ++ +++S+ E++ G Sbjct: 414 ERKIKELENRIDELTVRSQYKEAADLKKELFRLKSEYESLKSG 456 >gi|4558484|gb|AAD22629.1|AF097363_1 heat shock protein 101 [Triticum aestivum] Length = 918 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + + Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447 Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618 + D+R Q Y++ R L +++EE++ + + + + + A L Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507 Query: 619 SILHEVHIQIHQIESQ 634 L E+ I ++E + Sbjct: 508 GALQEIDAAIAKLEGE 523 >gi|152976937|ref|YP_001376454.1| recombination and DNA strand exchange inhibitor protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189030426|sp|A7GTK1|MUTS2_BACCN RecName: Full=MutS2 protein gi|152025689|gb|ABS23459.1| MutS2 family protein [Bacillus cytotoxicus NVH 391-98] Length = 786 Score = 44.9 bits (104), Expect = 0.038, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 55/162 (33%), Gaps = 19/162 (11%) Query: 493 NHPAILQEQYQEL----ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + Y A + +D N L + L F + L ER Sbjct: 449 HYPELKAYGYNRNQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSERVINR 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + +++A L K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWKEAEELRKQSEKLHR---ELQRQIIEFNEE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEAIIRELRQLRKAQLANVK 606 >gi|327284994|ref|XP_003227220.1| PREDICTED: myosin-XVIIIa-like [Anolis carolinensis] Length = 2364 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 40/329 (12%), Positives = 98/329 (29%), Gaps = 39/329 (11%) Query: 332 YKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETE 391 K +D + ++ + L+ D D + ++ +D KR + Sbjct: 1333 KKQMDSMEMEVMEARLIRAAELNGEMDDDDSG-----GEWRLKYERAIREIDFTKKRLQQ 1387 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 E+ + + D + Q ++ + Q+L + Sbjct: 1388 EFEDKLEAEQQSKRQLERRLTDLQADGEETQRSLQTLKKKCQRLTAELQDTKLHLEGQQG 1447 Query: 452 KNA---RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL------------------LT 490 +N + + + + KL ++ RE +L T Sbjct: 1448 RNHELEKKQRRFDSELSQAHEEAQREKLGREKLAREKDMLIAEAFGLKQQIEEKDSSLAT 1507 Query: 491 LINHPAILQEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 L L+ + Q+L+ + L K+ L + K E Q + + Sbjct: 1508 LTQKVESLEAELQDLSSQESKDEASLAKVRKQLRDLEAKAKDQEEELDEQAGTIQMLEQA 1567 Query: 550 LKQLDRQVRDAGLWSATT-EANIVDVRQGYQQALALYKRFRL-----------LSRQKEE 597 +L+ ++ + E+ +V + Q K+ + + R+K + Sbjct: 1568 KLRLEMEMERLRQTHSKEVESRDEEVEEIRQSCQKKLKQMEMQLEEEYEEKQKVLREKRD 1627 Query: 598 IEKQIAQVTAKGEAEKTAILISILHEVHI 626 +E ++A V+ + + ++ Sbjct: 1628 LEGRLAAVSDQVNQRDFETEKRLRKDLKR 1656 >gi|307704879|ref|ZP_07641771.1| ABC transporter family protein [Streptococcus mitis SK597] gi|307621592|gb|EFO00637.1| ABC transporter family protein [Streptococcus mitis SK597] Length = 633 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 19/160 (11%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + + + Sbjct: 472 NHLDIDSKEVLENALIDFDGTILFVSHDRYFINRVATHVLELSENGSTLYLGDYDYYVDK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E + Q++ + + + ++ ++ L ++ L + EE+E Q Sbjct: 532 KDEME-VSQIEETSTSNQVKEPSPVNDYQAQKESQKEVRKLMRQIENLEAEIEELESQSQ 590 Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q+ +AEK L + L ++ + +EAM+E Sbjct: 591 AISEQMLETNDAEKLMELQAELDKISHR-----QEEAMLE 625 >gi|297280640|ref|XP_002801951.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 3 [Macaca mulatta] Length = 1699 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV + E ++ + ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTELSHLEQQLEEANAVRQELDEAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|260885469|ref|ZP_05735095.2| ATP-dependent chaperone protein ClpB [Prevotella tannerae ATCC 51259] gi|260852438|gb|EEX72307.1| ATP-dependent chaperone protein ClpB [Prevotella tannerae ATCC 51259] Length = 895 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 77/222 (34%), Gaps = 26/222 (11%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + +QKY + R ++ + +++ + + K +++ A++ + + Sbjct: 344 EEYQKYFEKDKALERRFQTVTVDEPSTEDAISILRGLKERYENHHKVRIQDDAIIAAVQL 403 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 +H I + I + KL + + +EI +RL + + Sbjct: 404 SHRYISDRFLPD-KAIDLMDEAAAKLRME-----RDSQPEELDEITRRLRQLEIEREAIK 457 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQV 605 + I + + + A ++ R L + +E +K++ + Sbjct: 458 RENDENKLAQL----NKEIATLEEREKNFRAKWEGERELLNKIQENKKEMERLKFEADRA 513 Query: 606 TAKGEAEK--------TAILISILHEVHIQIHQIESQEAMIE 639 +G E+ L + + ++ + Q + EA+++ Sbjct: 514 EREGNYERVAEIRYGKLQALQAEIDKIQEDLKQRQGNEALVK 555 >gi|311252357|ref|XP_003125069.1| PREDICTED: dynactin subunit 1-like [Sus scrofa] Length = 1313 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 272 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 331 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 332 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 391 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 392 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 451 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 452 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 511 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 512 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 571 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 572 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 627 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 256 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 315 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 316 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 375 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 376 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 429 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 430 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 473 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 248 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 307 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 308 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 362 >gi|297663240|ref|XP_002810085.1| PREDICTED: lamin-A/C-like [Pongo abelii] Length = 790 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 102/319 (31%), Gaps = 34/319 (10%) Query: 324 DDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVD 383 D A ++L G+ + R A +L Sbjct: 219 DSVAKERARLQLELSKVREEFKELKARNTKKEGDLIAAQARLKDLEALLNSKEAALSTAL 278 Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 KR E + + A+LE L ++D+ LR +RLQ + ++ + Sbjct: 279 SE-KRTLEGELHDLRGQVAKLEAALGEAKKQLQDEMLRRV---DAENRLQTMKEELDFQK 334 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQ 503 + Y ++ R + + + + +L+ + + Sbjct: 335 NIYSEELRETKRRHETRLVEIDNGKQREFESRLADALQ--------------ELRAQHED 380 Query: 504 ELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL-LKQLDRQVRDAGL 562 ++ + EL+K +S + + + E + + L Q+ Sbjct: 381 QVEQYK---KELEKTYSAKLDNARQSAERNSNLVGAAHEELQQSRIRIDSLSAQLSQLQK 437 Query: 563 WSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEA--EKTAILISI 620 A EA + D+ + +R E E+++A++ A+ + ++ L+ I Sbjct: 438 QLAAKEAKLRDLEDSLARERDTSRRL------LAEKEREMAEMRARMQQQLDEYQELLDI 491 Query: 621 LHEVHIQIHQ----IESQE 635 + ++IH +E +E Sbjct: 492 KLALDMEIHAYRKLLEGEE 510 >gi|251798598|ref|YP_003013329.1| exonuclease [Paenibacillus sp. JDR-2] gi|247546224|gb|ACT03243.1| exonuclease, putative [Paenibacillus sp. JDR-2] Length = 1030 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 85/261 (32%), Gaps = 20/261 (7%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 + +L + ++ K ++ I +L+QL Q+ + + Sbjct: 590 LAEQQGELRKRWKQLNEEAERLGAQVEQGKQLKQRAEEIEQKLEQLLQEKDKLQAEQQQI 649 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADI- 508 + + + L K + ++ +L +L A +E L + Sbjct: 650 AVERGAKQSALEKELERIPEELRSPKQMELRLKQQRSLAESLA---AAWKEAQDGLLRMR 706 Query: 509 -RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 ++ + ++ ++ L + F E L + + +A + Sbjct: 707 AKFAEEQAHA--------EQTEQQLAEARVNAALAAKRFEEELAKAEFSSEEAFREAHLP 758 Query: 568 EANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQ 627 + +++ + R ++ EE+E+++ + + L + + E+ + Sbjct: 759 DQERRALKEQLEAYNTALAAAR---KRIEELEQEL----SGKQQADIEALKAAIAELKER 811 Query: 628 IHQIESQEAMIEGFGKMSGRL 648 I + + F + +G+L Sbjct: 812 IEAATNALQIASRFAEDAGKL 832 >gi|224066189|ref|XP_002194816.1| PREDICTED: hypothetical protein [Taeniopygia guttata] Length = 724 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 25/218 (11%), Positives = 63/218 (28%), Gaps = 9/218 (4%) Query: 429 RDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALL 488 + ++ + + + K + + + + E +L Sbjct: 20 AELFRKQEEFKKEKLLKDAGAFAKPRISNKKPSIWTKQNTGVANRAAKDVEQKAEEQDML 79 Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 + Y+++ + + E + L+ L QK + Q L + Sbjct: 80 DKSRKKLEEKAKLYEKMTKGDFPDEETEDLY--LVDF--TQKIIDKQHEVQELHQSEAAG 135 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKR-FRLLSRQKEEIEKQIAQVTA 607 + D + + D + + + R R + + + K ++ Sbjct: 136 KTSERDTDEEETQPEADIP--PPEDPDEEWVDYVDFLGRSRRCMKKDLPSLLKMDQELQG 193 Query: 608 KGEAEKTAILISI--LHEVHIQIHQIESQEAMIEGFGK 643 K L+S E+ Q + E +EA+ + G Sbjct: 194 KRCEPDGNTLLSEDMRRELQRQQWEKEEEEALRKPMGP 231 >gi|218886449|ref|YP_002435770.1| replicative DNA helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757403|gb|ACL08302.1| replicative DNA helicase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 450 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 12/161 (7%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 ++ + E A+L ++ ++L L + Q+++ + Sbjct: 2 RRVPPHSTEAEQAVLGGILLRNSVLHSVVDTLRPEDFYLPAHQQIYDACLELYRRNAPID 61 Query: 534 PEEIHQRLCERG----------FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 + + L + EL + + + ++ +R Sbjct: 62 LVTMAEYLQSQSRLEGVGGAVYLAELAQSTISAANAEHYSTIVRDKSL--LRSLIGAGSE 119 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 + SR+ +++ + Q + + E+ Sbjct: 120 IISNCYDASREVQKLLDESEQAVFAISERVSGKMFRSAKEL 160 >gi|195121678|ref|XP_002005347.1| GI19126 [Drosophila mojavensis] gi|193910415|gb|EDW09282.1| GI19126 [Drosophila mojavensis] Length = 2047 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA A + L + ED + + L Sbjct: 1677 DEERKQRTAAVAAKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1736 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1737 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIATNASKGS 1796 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1797 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1853 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1854 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1913 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1914 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1973 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1974 YQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSSRL 2012 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 98/275 (35%), Gaps = 26/275 (9%) Query: 370 AFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIR 429 EK+ +++ TE+++ E+ LE + + +++ + + ++ Sbjct: 1041 QLEKVQLDAKIKKHEEELALTEDQNQKLLKEKKVLEERANDLSQTLAEEEEKAKHLAKLK 1100 Query: 430 DRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPS-----QRLMQSSLVKGKLSKKPSLRE 484 + + + + +++ R + + ++L + + ++ + + RE Sbjct: 1101 AKHEATIAELEERMHKDQQQRQESDRTKRKIETEVADLKEQLNERRIQVEEMQAQLAKRE 1160 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L TL+ + + QK L S E + L E R Sbjct: 1161 EELTQTLMR-----------IDEESASKAAAQKAQRELESQLAEIQEDLEAEKSARSKAE 1209 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 L + +++ L S T A ++R +Q LA+ K+ L + E +A+ Sbjct: 1210 KLRRDLSEELEALKNELLDSLDTTAAQQELRSKREQELAMLKK--SLEEEGVNHESVLAE 1267 Query: 605 VTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + K L+ ++ Q+ + +A +E Sbjct: 1268 MRHKH--------AQELNSINDQLENLRKAKAGLE 1294 >gi|30089962|ref|NP_003598.2| serine/threonine-protein kinase MRCK alpha isoform B [Homo sapiens] gi|55665001|emb|CAH71183.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] gi|55666438|emb|CAH71337.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] gi|56206214|emb|CAI19108.1| CDC42 binding protein kinase alpha (DMPK-like) [Homo sapiens] Length = 1719 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|4928755|gb|AAD33718.1|AF136711_1 myosin heavy chain [Amoeba proteus] Length = 2138 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 31/288 (10%) Query: 387 KRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGY 446 E + + + K ++L+ + + D + + + Sbjct: 1745 NYLEEIKHKKDLEINELRKQLDAESEARDKFEQLKNELERDVADA-KHNLEAEKKSRTDA 1803 Query: 447 GRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL- 505 R KK D+ K + +K +L+E LL + +++ + L Sbjct: 1804 EREAKKAEAQYDELKHRSEASDRGKDKLEKERKRALKELRLLREKVEAIEAEKDEQERLA 1863 Query: 506 -----------ADIRYDNNE-------LQKLWSFLFSDFVEQKYFLP-----EEIHQRLC 542 + ++ ++L L + +++ L Sbjct: 1864 WKFQEEVDALTEALDLEHKARVAHEKIAKQLRVQLEDFKETAEDATRGKSRADQLTSELQ 1923 Query: 543 ER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + L + + + R+ + ++ I D+++ + ++ L K ++E+ Sbjct: 1924 AEIEDLKDQLDEEEERNRELANFKINNKSAIADLKKALDREISAR---EALEEAKRQLER 1980 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + + E+ + S ++E A + G+L Sbjct: 1981 DNNELRDQLDEERVSRGNSE-RAARKSFAELEDTNARLNALNASIGKL 2027 Score = 38.3 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 42/337 (12%), Positives = 100/337 (29%), Gaps = 13/337 (3%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 + L K + ++ D +A + + + ED Sbjct: 1213 NKFSQLTKTNLKLKADLDELQDNREGGDQAFQKLKKLVAKLESDKKMKEKEYEDERDL-- 1270 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKD-QKLRYY 423 K +K + ++ E R +LE L+ + +D Q R Sbjct: 1271 -KNKLDAQKKLSQAELDGLKNALEEMAKNRSREEKNRKDLENRLRELEDQAEDGQAARSN 1329 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + R L +A + + + L +S + + K + Sbjct: 1330 LEKKFRGFEDNLEDHQSQVDEVQDDVNVLSAAKKKLESELEALKRSLDNEAEGRKVAEEK 1389 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 +L T ++ + + N +K+ + + + E Sbjct: 1390 MK-VLDTELHELQLALSNAENKNTGLVRNV--KKVQDEVEDLNEQYENASKELSKLDKGN 1446 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEA----NIVDVRQGYQQALALYKRFRLLSRQKEEIE 599 + LK+L R V+++ E ++ + + Q L + L R K++++ Sbjct: 1447 KKTEAELKELRRHVQESQSSLDAGELKLRHTQDELDELHHQLEDLEAKSSSLERSKKQLQ 1506 Query: 600 KQIAQVTAKGEAEKTAILISIL--HEVHIQIHQIESQ 634 Q+ + E E A + ++ + +++ Sbjct: 1507 LQVDDLEDTHEEELAARTKAERLVKDLEADLAELQET 1543 >gi|159119806|ref|XP_001710121.1| Liver stage antigen-like protein [Giardia lamblia ATCC 50803] gi|157438239|gb|EDO82447.1| Liver stage antigen-like protein [Giardia lamblia ATCC 50803] Length = 1811 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 33/297 (11%), Positives = 86/297 (28%), Gaps = 33/297 (11%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + L + D+ L++ + + ++ Sbjct: 940 DALHGMSPEELQLMEQREREFNLKLKELTDRRDELLYKDDTEALKLIEEEIWAFVDAEEE 999 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS--K 478 + QA D L++ Q+ K + R + + +L K + Sbjct: 1000 KKMRIQAADDLLKKRAQEEEDRRRAEIEAKIKEEQDRVAEERRLQEEMIALQKKQQQEYA 1059 Query: 479 KPSLREAALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + R+A LL + +EQ + + + + ++L L + + Sbjct: 1060 EQETRKADLLREAME-----KEQLERIEEEQRIKAEARRRLIDDLEATAERAAAEDRIRV 1114 Query: 538 HQRLCE-----RGFGELLKQLDRQVRDAGLW--SATTEANIVDVRQGYQQALALYKRFRL 590 L E + E + + R L R+ + +K + Sbjct: 1115 KAELEEMARIKKELEEAARTASEEKRKLLLQQKEQLEREMAETARRHEEDVARRHKELQT 1174 Query: 591 LSRQKEEIEKQIAQVTAKGEAEKTAILISI-------------LHEVHIQIHQIESQ 634 L ++ ++ +Q +E L+ ++ +I ++++Q Sbjct: 1175 LHEERRKMREQ-----RLASSEPMDELLREDGNDASADPFSYASLDIERRIREMKAQ 1226 Score = 41.0 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 25/235 (10%), Positives = 66/235 (28%), Gaps = 12/235 (5%) Query: 414 HIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVK 473 + D + + + +RLQ+ + + + + + Sbjct: 854 QMTDHEQQLIQLKDEAERLQRENKVLAGRSAAPRHLHPNEFDSKSISVSFFEGLLNEPTH 913 Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYD-----NNELQKLWSFLFSDFVE 528 + E LL L + ++ E L E Sbjct: 914 SDGISLTTGEELRLLAILEQGDYEALDALHGMSPEELQLMEQREREFNLKLKELTDRRDE 973 Query: 529 QKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV---RQGYQQALALY 585 Y E + + E + + + ++++R + + R + + Sbjct: 974 LLYKDDTEALKLIEEEIWAFVDAEEEKKMRIQAADDLLKKRAQEEEDRRRAEIEAKIKEE 1033 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI---LISILHEVHIQIHQIESQEAM 637 + R+ +E + + + AE+ L+ E Q+ +IE ++ + Sbjct: 1034 QDRVAEERRLQEEMIALQKKQQQEYAEQETRKADLLREAME-KEQLERIEEEQRI 1087 >gi|324500751|gb|ADY40344.1| Structural maintenance of chromosomes protein 4 [Ascaris suum] Length = 1544 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 83/245 (33%), Gaps = 15/245 (6%) Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458 D + + N++ +++ R + +L++ T++ R + Sbjct: 766 DTSKDSAKEIAALQNYLDEEQERLVDIRRSIQQLEKRLNSVKTDYDRVKRNEQNLKTDIG 825 Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLR-EAAL------LLTLINHPAILQEQYQEL-ADIRY 510 ++ L + K+ K + E A+ + L E E+ + Sbjct: 826 PLEEKIEGLEKRLKEQKVRAKEAAADERAVEKAKQKVAELEKERNAAAEVADEVREQVAE 885 Query: 511 DNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEAN 570 + ++Q +++ L F Q + +G + ++ R+ A Sbjct: 886 VSAKIQAVYAELVEPFKRQ--LDEALARKESASKGIAKEKGAVNNAERNLNKAKARKNDL 943 Query: 571 IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 D+++ + ++ ++ EE+ KQ E+ S L EV + Q Sbjct: 944 EADLKETEEAIEKIHLNADNHVQRMEELMKQ-----KSERQEELKEAESRLKEVSNKFSQ 998 Query: 631 IESQE 635 ++++E Sbjct: 999 LDNEE 1003 >gi|268596499|ref|ZP_06130666.1| replicative DNA helicase [Neisseria gonorrhoeae FA19] gi|268550287|gb|EEZ45306.1| replicative DNA helicase [Neisseria gonorrhoeae FA19] Length = 467 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 14/181 (7%) Query: 462 PSQRLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWS 520 + + L E ++L ++ +PA ++ + +E + ++ Sbjct: 5 AAMPPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDGIADVVSGEDFYRHEHRLIFR 63 Query: 521 FLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQ 580 + E + + + L ++L+ L + + Y + Sbjct: 64 SIAKLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAE 117 Query: 581 ALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 + R R + RQ E+ +IA+ + L+ QI ES +G Sbjct: 118 IV----RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQG 171 Query: 641 F 641 F Sbjct: 172 F 172 >gi|212450|gb|AAA48986.1| nonmuscle myosin heavy chain [Gallus gallus] Length = 1986 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + EK I+ + E E ++ ELE L + + +++++ Sbjct: 886 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 945 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + ++Q Q + +K + + M+ ++ + Sbjct: 946 ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 1005 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537 L+E L+ + E +LA+ L KL + +E++ E+ Sbjct: 1006 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1059 Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q L + + + +L Q+ + + A E +++ + + Sbjct: 1060 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1116 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + E++ QIA++ E+EK + + ++ ++ ++++ Sbjct: 1117 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1164 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L +++ ++++ + Y + ++RLQQ + + +K Sbjct: 1401 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1460 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L + Sbjct: 1461 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1515 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + + +L++ R + ++ Sbjct: 1516 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1561 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q R + + + ++ Q + EK +L+ + E+ ++ Q Sbjct: 1562 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1621 Query: 635 EAM 637 A+ Sbjct: 1622 RAL 1624 >gi|2104495|gb|AAB57773.1| dynactin1 [Mus musculus] Length = 1281 Score = 44.9 bits (104), Expect = 0.039, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDXLQEN 477 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.2 bits (84), Expect = 9.1, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L + +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|319940834|ref|ZP_08015173.1| hypothetical protein HMPREF9464_00392 [Sutterella wadsworthensis 3_1_45B] gi|319805716|gb|EFW02497.1| hypothetical protein HMPREF9464_00392 [Sutterella wadsworthensis 3_1_45B] Length = 343 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 96/332 (28%), Gaps = 32/332 (9%) Query: 42 CCPFHDEKTP-SFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPL 100 CP + SF + G +YC C + GD + + F++++ L + G+P+ Sbjct: 36 PCPLCGGRDRFSFFAKEVGGRWYCRGCGM-GDGIKLVQQFTKKEFVQTLDHLETLLGLPV 94 Query: 101 PV-VDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 P + E+ + L + A +L +D + + L Sbjct: 95 PKGKQGRYERSAVARHKLWAEKQRAE---QSALWEK--AFPLGEIDRQTPVWRYLCARGL 149 Query: 160 GYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIA 219 G SR + G IDG A F L ++ Sbjct: 150 GDLVPSRELRFVKRLA-----CWEVPDGQNIDGAAKARLVGEFPAMLA--------RLTN 196 Query: 220 FGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEG 279 G+ ++ + + + + K + + L EG Sbjct: 197 AEGKFITLHRTYLTADGSKAPVHSAKKLAAGAVE--------NGVIRLYPAGGVVCLAEG 248 Query: 280 YMDVLSLCQ-AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGD--DPGLRAAYKAID 336 LS+ G+ + + + + I +C D D G AY+ Sbjct: 249 IETALSVHALTGLPAWSVVSLSGMKRFGPETIPDGVRTIRICGDNDRSYAGAAGAYELAS 308 Query: 337 LVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGK 368 + + + G D + + +G Sbjct: 309 RLRRSRPELEVSVHIPQAAGTDWNDVLLAHGM 340 >gi|218442742|ref|YP_002381062.1| lipopolysaccharide biosynthesis protein [Cyanothece sp. PCC 7424] gi|218175100|gb|ACK73832.1| lipopolysaccharide biosynthesis protein [Cyanothece sp. PCC 7424] Length = 778 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 40/275 (14%), Positives = 86/275 (31%), Gaps = 24/275 (8%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 S Y K + + ++ ++ + ++ H N N + +L Sbjct: 149 STYINYAKESQRSPVTNAIRFIEQQLPEARAALNQSSSALTEFRRKH--NLDNPDSNAQL 206 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Q ++R+ + Y + ++ + S S Sbjct: 207 ASQTKQQSKERVAEAEIALNLTEQKYQQLQRQITEVGQDPSTAIIDSVLSQDSAYQSLLT 266 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFVEQKYFLPEEI 537 LRE + TL E ++ LQ L + L Sbjct: 267 QLREIEIQYTL------------EKTRYASEHPILQDLKDRRDEIKRLLENHVQNLIGTQ 314 Query: 538 HQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 RL ++ G++ + L Q+ + A + + ++RQ QA ++R L ++ Sbjct: 315 KSRLADKTVASGDIQQDLANQLLQTRIDLAVQKKQLNELRQIETQANLNFQRIVQLQQEY 374 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQ 630 E+E+Q ++ + L E+ ++ Q Sbjct: 375 RELERQYQ-----FNSQAVDDFLKKLQELRVREAQ 404 >gi|149036514|gb|EDL91132.1| dynactin 1, isoform CRA_a [Rattus norvegicus] Length = 1281 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 >gi|123445769|ref|XP_001311641.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121893459|gb|EAX98711.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Length = 1513 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 94/306 (30%), Gaps = 21/306 (6%) Query: 346 NRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLP-LVDMLWKRETENRSFNTPDERAEL 404 ++ + D F K E + P D K + + Sbjct: 328 MLISPMQDKNNSDLMQFTPQKSKDENEIFFLSPEPLKNDSSEKIHALESEIQKLKQDNKS 387 Query: 405 EIHLKNCINHIKDQK-----LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 + +N K + I ++ Q ++ + + + +++ Sbjct: 388 LEEALSLVNSTKSDIKELENVIEQLQGEIAEK-DQKIKELSSSKENDEILQELEVQIQEK 446 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL- 518 + S+ L + + K+ E + ++ +E + ++ L Sbjct: 447 ENISKSLQKKAEEIEMKEKENKELEQVIDSLKTEIDSLTKENEKLNKACERASDAATNLS 506 Query: 519 --WSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + + + EEI L + EL +++ D L + + + Sbjct: 507 KERDMIVDEMNKDINEKEEEIQNNLSK--IKELEQKIKDIETDKDLT--QNNKSEEIINE 562 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH-------EVHIQIH 629 + + R L ++ +E+E+ AQ++ E L + + E+ +I Sbjct: 563 LQNKIQNNLSKIRKLEQKIKELEEANAQLSNNKSEEIINELQNEIQNNLSKIRELEQKIK 622 Query: 630 QIESQE 635 ++ES + Sbjct: 623 ELESTQ 628 >gi|329664672|ref|NP_001193189.1| TATA element modulatory factor [Bos taurus] gi|297488534|ref|XP_002697005.1| PREDICTED: TATA element modulatory factor 1-like [Bos taurus] gi|296474994|gb|DAA17109.1| TATA element modulatory factor 1-like [Bos taurus] Length = 1092 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 87/261 (33%), Gaps = 33/261 (12%) Query: 406 IHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN-ARHRDQKGPSQ 464 K I IK++ S D L++ ++ + K+ K Sbjct: 521 DAAKKEIKSIKEELATRLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRT 580 Query: 465 RLMQSSLVKGKLSKKPSLREAAL--LLTLI--------NHPA-------ILQEQYQELAD 507 + ++ + KL+KK E L L ++ H +++ Q ++L Sbjct: 581 KDKENENIIAKLNKKVQELEEELQHLKQVLDGKEEVEKQHRENIKKLNSVVERQEKDLGR 640 Query: 508 IRYDNNELQK-----------LWSFLFSDFVEQKYFLPEEIHQRLCER--GFGELLKQLD 554 + D NEL++ + L E L EL L+ Sbjct: 641 LHIDINELEEKNRSIQAALDSAYKELTDLHKANAAKDSEAQEAALSREMRAKEELSAALE 700 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 + +A T + D+R Q+A ++ L + E+++++ + + E Sbjct: 701 KAQEEARQQQETLAIQVGDLRLALQRAEQTAARKEDYLRHEISELQQRLQEAENR-NQEL 759 Query: 614 TAILISILHEVHIQIHQIESQ 634 + + S + QI +++ Sbjct: 760 SQSVSSTTRPLLRQIENLQAT 780 >gi|110623251|emb|CAI94864.2| heat shock protein 101 [Triticum turgidum subsp. durum] Length = 913 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + + Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447 Query: 567 TEANIVDVRQGYQQALALYKRF-------RLLSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618 + D+R Q Y++ R L +++EE++ + + + + + A L Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507 Query: 619 SILHEVHIQIHQIESQ 634 L E+ I ++E + Sbjct: 508 GALQEIDAAIAKLEGE 523 >gi|1572482|gb|AAB09050.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster] Length = 2012 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R ++ I + + AR + + +S V S Sbjct: 1746 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1798 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530 +K L+ L L N + Q+ A + N EL+ + + + Sbjct: 1799 RKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATL 1858 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588 + ++L G LL+Q + D + T V Q +Q L R Sbjct: 1859 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1918 Query: 589 RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646 +LL R +E E+++ + T K + ++ + E ++ +I+ ++++ G G S Sbjct: 1919 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSS 1978 Query: 647 RL 648 RL Sbjct: 1979 RL 1980 >gi|332252028|ref|XP_003275155.1| PREDICTED: serine/threonine-protein kinase MRCK alpha isoform 1 [Nomascus leucogenys] Length = 1719 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|149378353|ref|ZP_01896058.1| clpB protein [Marinobacter algicola DG893] gi|149357368|gb|EDM45885.1| clpB protein [Marinobacter algicola DG893] Length = 880 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 53/135 (39%), Gaps = 8/135 (5%) Query: 507 DIRYDNN--ELQKLWSFLFSDFVEQKYFLPEE-IHQRLCERGFGELLKQLDRQVRDAGLW 563 + L + S L +EQ+ E+ + Q + + EL+++L+ Sbjct: 420 SLNLSTPPRRLSHVRSELHQLGMEQELMTREQTLGQAIDHQREHELVERLETL----REE 475 Query: 564 SATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHE 623 + E D R+ + + + ++ + E + + T + + E+ L S Sbjct: 476 AEELEQRWNDQRELVARLVDIREQLLSEDTAETEANAEANEATPETDEERPD-LKSEAAA 534 Query: 624 VHIQIHQIESQEAMI 638 + ++ ++++ E ++ Sbjct: 535 IEQELEELQADEPLV 549 >gi|153000572|ref|YP_001366253.1| exodeoxyribonuclease V subunit gamma [Shewanella baltica OS185] gi|151365190|gb|ABS08190.1| exodeoxyribonuclease V, gamma subunit [Shewanella baltica OS185] Length = 1270 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 30/523 (5%) Query: 138 KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAG--LLIDGDNS 195 +L+ + + I++++L + R + E L + Sbjct: 129 ADTCEHLNTSDMTADDIKLYQLCGRIADIFDQYLVYRPDWILAWEQNEHPDSLTKSLNED 188 Query: 196 ATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGAL 255 LI R Q R + + LN+P+T L + L+ F + Sbjct: 189 QRWQPILWRALIAFNRDELNQSHYH--RANLHSDLIAALNNPDTSLAQLPQRLFVFGISS 246 Query: 256 NYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSP 315 Q I+L +N + QL LW+ Sbjct: 247 MAPQTLEVLYHLAGRIDVIVLGLSPCQHYWGDIVDPRNRARMAVQYAGKRQLAELWEEKL 306 Query: 316 RI--VLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 + L + G ++L H G+ V DP S ++ Sbjct: 307 EVGNPLLANNGKMGRELLDMLLELPAEHCDFGDDVYCEPCDDPNDPHSHASMLHGVQYDI 366 Query: 374 LIVESLPL---VDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 L +++L D + ENR D+++ + + + + L + + + + Sbjct: 367 LEMQTLDRVLGPDAELYQNVENRRLFKRDDQSIRVKSCHSPLREV--ETLHDHLLELLSN 424 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 + + Y K + + +G + P + LL Sbjct: 425 HADLTPKDIVVMMPDVAAYAPYIDAVFSAKQGLHYIPYAIADRGAAQESPLINSFLNLLG 484 Query: 491 L------INHPAILQEQYQELADIRYDNNELQKLWSFL----FSDFVEQKYFLPEEIHQR 540 + + + E L + D++ELQ + +L ++ L + + Sbjct: 485 INQSRFGLTDILSILEVPAILRRFQLDDDELQLIRRWLDEAGVRWGRNEQSRLKQGVPAF 544 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 + + + + + QAL F + + +I Sbjct: 545 EQNSWAFGIKRLILGYALSDDAPLYQDHLIVTGIEGQSAQALGKLLNFIEVLDETAQILA 604 Query: 601 -------QIAQVTAKGEA--EKTAILISILHEVHIQIHQIESQ 634 ++A++T +A + L E+ I +E + Sbjct: 605 LPQVGALRLAELTELLDAFYDTDEDEREQLQEIRDAIAALEQE 647 >gi|41945510|gb|AAH66061.1| Dctn1 protein [Mus musculus] Length = 1264 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 221 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 280 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 281 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 340 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 341 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 400 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 401 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 460 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 461 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 520 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 521 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 578 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 207 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 266 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 267 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 326 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 327 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 380 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 381 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 424 Score = 37.2 bits (84), Expect = 9.4, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L + +A + ++ + Q + ++ L R+ Sbjct: 199 EEEGLRAQVRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 258 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 259 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 313 >gi|71649638|ref|XP_813535.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70878427|gb|EAN91684.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 1028 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 73/222 (32%), Gaps = 20/222 (9%) Query: 426 QAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREA 485 + + RL L Q+ E + ++ R + Q RE Sbjct: 389 RELAQRLAALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETERAAARNREK 448 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L L + ++ +E + + + E ++ + + E+ + E+ Sbjct: 449 --LEKLTS--SLEKEIVALRSQLETNKREGEEAVHRVKAALSEEHARNMAAFVSQ-EEQR 503 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRL-----------LSRQ 594 E +++L R+++DA E + + QQ K+ Q Sbjct: 504 TRETIEKLQRELQDAQQHGIELERRREKLWEEVQQLKERLKQAHSDAETLSNKLIVAETQ 563 Query: 595 KEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 EE++ + + E + S++ + + ++E+ A Sbjct: 564 VEELQFSLQEARHATEGNEA----SLVCALKARKKELETTSA 601 Score = 37.9 bits (86), Expect = 5.5, Method: Composition-based stats. Identities = 30/288 (10%), Positives = 83/288 (28%), Gaps = 28/288 (9%) Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR--YYYSQAIRDRLQQLFQK 438 + E E + + + ++E + +++ + YY Q + + + Sbjct: 160 HNKEEYIEELEQQVRRLSEAKFQIEQQVLAYQEKVRESHKKTVEYYEQKMETLQHGISSE 219 Query: 439 YITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAIL 498 + + ++ ++ + + L + + L + TL + Sbjct: 220 KALKEEFAEKLSQREKDCQELQSEVRELREQVKKFDDETTTIKLLHGEMKKTLADREEEC 279 Query: 499 QEQYQELADIRYDNNELQKLWSFLFSDFVEQ---------KYFLPEEIHQRLCERGFGEL 549 E+ +++ LQ+L L + + + L Sbjct: 280 LEKRRQIES-------LQELHDALLERVEREKQNKDKTPMESVPIAHSDAHVSSHVASGL 332 Query: 550 L------KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK----EEIE 599 + +L R+V + + +++ Q E+ Sbjct: 333 VVGDSSVAELRRRVEALEEEKVLMLREKEQMTALLLEERRIHRVTVKEREQILSHDRELA 392 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGR 647 +++A + + E E+ + E + + QE G G + R Sbjct: 393 QRLAALVQRLENERQQERQNDREEEEKRGKMLTQQEEAAPGNGMETER 440 >gi|294101185|ref|YP_003553043.1| ATP-dependent chaperone ClpB [Aminobacterium colombiense DSM 12261] gi|293616165|gb|ADE56319.1| ATP-dependent chaperone ClpB [Aminobacterium colombiense DSM 12261] Length = 874 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 74/208 (35%), Gaps = 10/208 (4%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K I + + R ++ + + +++ + ++ +R+ AL+ + Sbjct: 324 YRKRIEKDAALARRFQPVLVEQPDVEDTISILRGLKERLEVHHGVRIRDNALVGAAVLSN 383 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL--LKQL 553 + +++ I + + + + S E + + + E + L Sbjct: 384 RYITDRFLPDKAIDLVDEACAMIRTEIDSLPAELDAASRKVMQLEIEEAALKKEKDAASL 443 Query: 554 DRQ-VRDAGLWSATTEANIVDVRQGYQQALALYKRF--RLLSRQKEEIEKQIAQVTAKGE 610 +R V L A EA+ + + ++ + R + K EIEK + + Sbjct: 444 ERLSVLQKELQEAREEADALRAQYESEKEVISKVRKMREEIDAVKREIEK----AEREYD 499 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQEAM 637 K A L L E+ Q+ + E A Sbjct: 500 LNKAAELKHGRLPELQQQLKKEEGAHAA 527 >gi|290962751|ref|YP_003493933.1| chaperone [Streptomyces scabiei 87.22] gi|260652277|emb|CBG75410.1| chaperone [Streptomyces scabiei 87.22] Length = 879 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 16/214 (7%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INH 494 ++K+I + + R +++ + +++ + ++ +++ AL+ ++H Sbjct: 324 YRKHIEKDAALERRFQQVLVEEPSVEDTISILRGLRERLEIFHGVKIQDTALVSAATLSH 383 Query: 495 PAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD 554 I + I + +L + + S E + E + Sbjct: 384 RYITDRFLPD-KAIDLVDEACARLRTEIDSMPAELDEITRRVTRLEIEEAALSKETD--- 439 Query: 555 RQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI-------AQVTA 607 L E + + A ++ R R+ +E+ +++ + Sbjct: 440 -PASKTRLEELRRELADLRGEADAKHAQ--WEAERQAIRRVQELRQELEQVRHEAEEAER 496 Query: 608 KGEAEKTAIL-ISILHEVHIQIHQIESQEAMIEG 640 + + A L L +V ++ E Q A +G Sbjct: 497 AYDLNRAAELRYGRLQDVERRLKSEEEQLAAKQG 530 >gi|1572480|gb|AAB09048.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster] Length = 2017 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1650 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1709 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1710 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1769 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1770 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1826 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1827 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1886 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1887 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1946 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1947 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1985 >gi|73980483|ref|XP_866205.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 5 [Canis familiaris] Length = 1261 Score = 44.9 bits (104), Expect = 0.040, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|220933841|ref|YP_002512740.1| response regulator receiver [Thioalkalivibrio sp. HL-EbGR7] gi|219995151|gb|ACL71753.1| response regulator receiver [Thioalkalivibrio sp. HL-EbGR7] Length = 620 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 87/253 (34%), Gaps = 15/253 (5%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 TE + + ++ +++ + ++ L Q+ E + Sbjct: 227 TELILRQQSVDEKRVSERIRELEAQLQESQAARQSAEEAAGGLTAQLQRIEQESTARTSA 286 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 + S R + L + + + A L + + + ++ Sbjct: 287 LESELEGSRAALQSARDELARLGEERQRLDEAAARAQTLESQLQ---------EARGELS 337 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 EL ++ + L + +++ ++ G + L L + + A E Sbjct: 338 SHGEELAEVRAQLQAALDQRQALEARLSGEQDDRMGLEDRLDSLQESLAEREQLLAEREE 397 Query: 570 NIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQV-TAKGEAEKTAILISILH--EVHI 626 +V VR ++A L R + E +E+Q + + E T +++ L H Sbjct: 398 GLV-VRD--REANQLRDRALRAEQALERLEEQAREAVEQDADEEDTQAMLTALRTRAEHA 454 Query: 627 QIHQIESQEAMIE 639 +++Q++ ++ ++E Sbjct: 455 ELNQLQLEDELVE 467 Score = 38.3 bits (87), Expect = 4.2, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 70/203 (34%), Gaps = 13/203 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q+ RD L +L ++ R ++ ++ +G + L + + + +L + Sbjct: 298 LQSARDELARLGEERQRLDEAAARAQTLESQLQEARGELSSHGE-ELAEVRAQLQAALDQ 356 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKL--WSFLFSDFVEQKYFLPEEIHQRLC 542 L + EQ + ++ + L L ++ E + + +L Sbjct: 357 RQALEA-----RLSGEQDDRMGLEDRLDSLQESLAEREQLLAEREEG-LVVRDREANQLR 410 Query: 543 ERGF--GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 +R + L++L+ Q R+A A E + +A L + E+ Sbjct: 411 DRALRAEQALERLEEQAREAVEQDADEEDTQAMLTALRTRAEHAELNQLQLEDELVELAA 470 Query: 601 QIAQVTAKGEAEKTA--ILISIL 621 + + EA + L+ L Sbjct: 471 KQERSEQAREAAERELRSLMQEL 493 >gi|160881874|ref|YP_001560842.1| replicative DNA helicase [Clostridium phytofermentans ISDg] gi|160430540|gb|ABX44103.1| replicative DNA helicase [Clostridium phytofermentans ISDg] Length = 442 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 30/81 (37%) Query: 474 GKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFL 533 K+ + E +++ ++I + + L + ++ L+ + F E K Sbjct: 7 KKIQPHSAEAEQSVIGSMIMDRDAIITASEILNAEDFYQHQYGVLYDAMIELFQEGKPVD 66 Query: 534 PEEIHQRLCERGFGELLKQLD 554 + +L E+ L L+ Sbjct: 67 LITLQSKLKEKEVPPELCSLE 87 >gi|80474654|gb|AAI08379.1| Cgn protein [Mus musculus] Length = 703 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 90/255 (35%), Gaps = 10/255 (3%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 +E + + ++ +++ KL + +R L+ ++ + Sbjct: 386 KEKAEECHRLQELLERRKGEVQQSSKELQNMKLLLGQEEGLRHGLEAQVKELQLKLKHSQ 445 Query: 448 RY-WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELA 506 K + +D + L + K ++ ++ LRE L + QE+ Sbjct: 446 SPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALKGALKEEVASHDQEVE 505 Query: 507 DIRYD-NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 +R + ++L + + E ++ EL ++L+ + G W + Sbjct: 506 HVRLQYQRDTEQLRRSMQDAAQDHAALEAE---RQKMSSLVRELQRELEETSEETGHWQS 562 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE----IEKQIAQVTAK-GEAEKTAILISI 620 + N ++R Q+ L L + + E +++ + Q A + + L Sbjct: 563 MFQKNKEELRATKQELLQLRMEKEEMEEELGEKMEVLQRDLEQARASTRDTHQVEELKKE 622 Query: 621 LHEVHIQIHQIESQE 635 L ++ ++++++ Sbjct: 623 LRRTQGELKELQAEQ 637 >gi|3941223|gb|AAC82221.1| myosin heavy chain [Schistosoma japonicum] Length = 528 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 89/244 (36%), Gaps = 22/244 (9%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 +R ++E +K + D++ + ++ ++ ++ + +K + + Sbjct: 194 QRGDMEQRIKELEERLADEEDQAANLSEVKKKMSAEIEELKKDVEDLESSLQKAEQEKQT 253 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +Q+ + + + ++ L + + L N L KL Sbjct: 254 KDNQIRTLQAEMAQQDETIGKLNKDKKNLE------EQNKRTQEALQAEEDKVNHLNKLK 307 Query: 520 SFLFSDFVEQKYF---------LPEEIHQRLCE--RGFGELLKQLDRQVRDAGLWSATTE 568 + L S E + E+ ++L + E + L+R RD E Sbjct: 308 AKLESTLDEMEENLAREQKIRGDVEKSKRKLEGVLKATQETVDDLERVKRDLEEQLRRKE 367 Query: 569 ANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISI--LHEVHI 626 A I + ++ L + L R+ +E++ +I ++ EAE+ A + ++ Sbjct: 368 AEISGLSGKFEDEQGLVAQ---LQRKIKELQTRIQELEEDLEAERAARSKAEKSRQQLES 424 Query: 627 QIHQ 630 ++ + Sbjct: 425 ELEE 428 >gi|326793269|ref|YP_004311090.1| maltose O-acetyltransferase [Clostridium lentocellum DSM 5427] gi|326544033|gb|ADZ85892.1| Maltose O-acetyltransferase [Clostridium lentocellum DSM 5427] Length = 721 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 31/214 (14%), Positives = 75/214 (35%), Gaps = 4/214 (1%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q +RL+Q ++ + ++ R R + ++RL Q + +L ++ E Sbjct: 178 IQEEAERLRQEAEEAEEAER-LRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAE 236 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSD-FVEQKYFLPEEIHQRLCE 543 L L+++ +E +R + E ++L + Q+ E + Q E Sbjct: 237 R--LRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAEE 294 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + ++R + + + Q+A L + R ++E E+ Sbjct: 295 AERLRQEAEEAERLRQEAEEAERLRQEAEEAERLRQEAERLRQEAEEAERLRQEAEEAER 354 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 E E+ E+ + + ++++ Sbjct: 355 LRQEAEETERLIQEAEKAREILQEEDAKQKRKSI 388 >gi|320544370|ref|NP_001189009.1| zipper, isoform F [Drosophila melanogaster] gi|318068695|gb|ADV37254.1| zipper, isoform F [Drosophila melanogaster] Length = 1979 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1612 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1671 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1672 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1731 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1732 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1788 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1789 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1848 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1849 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1908 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1909 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1947 >gi|296482742|gb|DAA24857.1| dynactin 1 [Bos taurus] Length = 1239 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + A L +E + L D D E ++KL + + + + R Sbjct: 383 ERTIDELKEQVDAALGAEEMVETLTDRNLDLEEKVRKLKETVGDLEAINEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L QVRDA + + D +Q ++ L + ++R ++ Sbjct: 443 ETELELREQLDMAGAQVRDAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRALTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 42.2 bits (97), Expect = 0.26, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIH 538 L + + + + D + L + + VE+ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAERTIDELKEQVDAALGAEEMVE 404 >gi|296223520|ref|XP_002757645.1| PREDICTED: dynactin subunit 1 isoform 3 [Callithrix jacchus] Length = 1253 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|296223518|ref|XP_002757644.1| PREDICTED: dynactin subunit 1 isoform 2 [Callithrix jacchus] Length = 1236 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|240080354|ref|ZP_04724897.1| replicative DNA helicase [Neisseria gonorrhoeae FA19] Length = 461 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 56/178 (31%), Gaps = 14/178 (7%) Query: 465 RLMQSSLVKGKLSKKPSLREAALLL-TLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + L E ++L ++ +PA ++ + +E + ++ + Sbjct: 2 PPEGREVGALSLPPHSMEAEQSVLGGLMLENPA-WDGIADVVSGEDFYRHEHRLIFRSIA 60 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 E + + + L ++L+ L + + Y + + Sbjct: 61 KLINEGRPADVITVQEDLQRN------EELEAAGGFEYLITLAQNTPSAANIRRYAEIV- 113 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 R R + RQ E+ +IA+ + L+ QI ES +GF Sbjct: 114 ---RERSIMRQLAEVGTEIARSAYNPQGRDAGRLLDEAENKVFQIA--ESTAKSKQGF 166 >gi|237708289|ref|ZP_04538770.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229457842|gb|EEO63563.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 717 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 98/376 (26%), Gaps = 26/376 (6%) Query: 9 KDLLIHI-PISNLIGQYVDWD-RRKTNAVKGDYWACCPFHDEKTPSFHCNDSK--GFY-- 62 +++L ++ Y+ R N P + + S + + G Y Sbjct: 5 EEILARTSNGLDVFRHYLPVKWRVGRNF-------LNPLYADSKASCNVYYDRRSGTYRM 57 Query: 63 YCFSCH-VKGDHLSFLSALLGCS------FIESVQRLAAIAGVPLPVVDPKIEKKEKIQT 115 F GD ++ L G F+E + + + L P+ Sbjct: 58 KDFGNGDYSGDCFFLVAKLKGLDCRNAADFVEVLHTIDRELCLGLEDDSPEDTAVPDGGC 117 Query: 116 DLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 +RL+ A + ++ + + G E + + Sbjct: 118 RTLRLVPGAREHGTRENRSGEGVSVRANGNGTGKPDGYTEEAAAPFDCPEP-KPYRTTEK 176 Query: 176 KGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLN 235 E I + R G+ F Y Sbjct: 177 PFTDAELAYWGASGITEELLHRYGAVSLAEYRGETRE--GKSFGFSST--PAEPMFGYKG 232 Query: 236 SPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV 295 ++ + +G + + + L G DVL+L G + Sbjct: 233 KWGVKVYRPMSEVRFVYGGHTGDNYCFGLEQLPSKGDLLFLTGGEKDVLTLAAHGFHAIC 292 Query: 296 SSLGTA-LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLS 354 + T+ + +R L IVL +D D GL + K + + + + Sbjct: 293 FNSETSVIPAKTVRKLVYRFKHIVLLYDTDKTGLECSEKHRAQLSEYGVKRLVLPLPGTK 352 Query: 355 RGEDPDSFIRCYGKTA 370 +D + + Sbjct: 353 AEKDVTDYFKAGHTRE 368 >gi|145298233|ref|YP_001141074.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] gi|142851005|gb|ABO89326.1| chromosome segregation protein SMC [Aeromonas salmonicida subsp. salmonicida A449] Length = 1124 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 26/239 (10%), Positives = 78/239 (32%), Gaps = 19/239 (7%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + + + + + + + + ++ + + + K EA Sbjct: 654 QLHSAFELSQRTVREQEQQWQQLREAWSLREGKRQERLQRLGQLGEELTRLDKEQADEAQ 713 Query: 487 LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR------ 540 L + + +E+ EL + E +L ++ + + Sbjct: 714 RLAAALQQLELDEERLGELQEQGEPLTESLQLAQE--RVTHAERAVEEARLRREQQQASC 771 Query: 541 ----LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS---- 592 L ++ +L+ ++++ GL A + Q L + L Sbjct: 772 QRWQLEQQNQSQLISLREQELARLGLELAELKEPGATPGQDLSPLLVEQRNLEALQLACH 831 Query: 593 RQKEEIEKQIAQVTAKGEAE--KTAILISILHEVHIQIHQ-IESQEAMIEGFGKMSGRL 648 ++ E+E+Q+ ++ + + L L + ++ + + ++ + E F ++ RL Sbjct: 832 QRLAELERQLTELEQARSVDHKQLLTLQEKLATLRLERERNLTRRQGLHEQFEELGVRL 890 >gi|62471820|ref|NP_001014553.1| zipper, isoform C [Drosophila melanogaster] gi|320544368|ref|NP_001189008.1| zipper, isoform E [Drosophila melanogaster] gi|320544372|ref|NP_001189010.1| zipper, isoform G [Drosophila melanogaster] gi|61678343|gb|AAX52688.1| zipper, isoform C [Drosophila melanogaster] gi|318068694|gb|ADV37253.1| zipper, isoform E [Drosophila melanogaster] gi|318068696|gb|ADV37255.1| zipper, isoform G [Drosophila melanogaster] Length = 1971 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1604 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1663 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1664 AAKEELQALSKEAERKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1723 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1724 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1780 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1781 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1840 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1841 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1900 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1901 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1939 >gi|223932182|ref|ZP_03624186.1| conserved hypothetical protein [Streptococcus suis 89/1591] gi|223899163|gb|EEF65520.1| conserved hypothetical protein [Streptococcus suis 89/1591] Length = 358 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 P HD SF + FS ++GD + F+ + G +F E+V L Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78 >gi|256829606|ref|YP_003158334.1| replicative DNA helicase [Desulfomicrobium baculatum DSM 4028] gi|256578782|gb|ACU89918.1| replicative DNA helicase [Desulfomicrobium baculatum DSM 4028] Length = 481 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 19/201 (9%), Positives = 55/201 (27%), Gaps = 20/201 (9%) Query: 442 EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + + + + Q + + S L++ ++ + E A+L + I Sbjct: 2 QPKKPQSKFGQRLGTKIQPEEALQKASSDLLR-RVPPHNTEAEQAVLGGVFLRNDIFHTL 60 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG----------FGELLK 551 + D + + + ++ + ++ + + L +G L + Sbjct: 61 VDTINDEDFYSPVHRIIYQAFQELYRRREPVDLVTVAEYLQTKGQLDEVGGTVYLASLAE 120 Query: 552 QLDRQVRDAGLWSATTEAN-----IVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606 + + + I + ++ L Q E+ IA+ Sbjct: 121 SVASASNAVFHAQIVRDKSVRRRLIQTSSEILTSCFEAGEQTESLLDQAEQQIFSIAESK 180 Query: 607 AK----GEAEKTAILISILHE 623 K + + L Sbjct: 181 GKPVFMSSKDLVQRVFEQLEA 201 >gi|253699226|ref|YP_003020415.1| ATP-dependent chaperone ClpB [Geobacter sp. M21] gi|251774076|gb|ACT16657.1| ATP-dependent chaperone ClpB [Geobacter sp. M21] Length = 862 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 22/190 (11%), Positives = 65/190 (34%), Gaps = 6/190 (3%) Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 ++K+I + + R +++ + +++ K + K +++ A++ Sbjct: 320 YRKHIEKDAALERRFQQVFAGEPSVEETISILRGLKEKYENYHKIRIKDGAIIAAATLSD 379 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDR 555 + +++ I + +L + S E I + + L Sbjct: 380 RYITDRFLPDKAIDLIDEAASRLRIEIDSKPTEIDEIDRRIIQLEIERQAM------LRE 433 Query: 556 QVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTA 615 Q E + +R + +KR L + E++++ + T + + + Sbjct: 434 QDTKVLDRLKKLEEELDGLRAQSAKLNEHWKRETTLLKDLGELKQRKEEKTEEAKRAERD 493 Query: 616 ILISILHEVH 625 L++ E+ Sbjct: 494 GLLARTAEIR 503 >gi|73980481|ref|XP_866193.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 4 [Canis familiaris] gi|73980511|ref|XP_866403.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 17 [Canis familiaris] Length = 1256 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|73980505|ref|XP_866367.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 14 [Canis familiaris] Length = 1249 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 213 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 272 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 273 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 332 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 333 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 392 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 393 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 452 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 453 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 512 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 513 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 568 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 197 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 256 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 257 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 316 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 317 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 370 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 371 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 414 Score = 37.6 bits (85), Expect = 6.9, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 189 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 248 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 249 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 303 >gi|34556788|ref|NP_906603.1| replicative DNA helicase [Wolinella succinogenes DSM 1740] gi|34482503|emb|CAE09503.1| REPLICATIVE DNA HELICASE EC 3.6.1 [Wolinella succinogenes] Length = 473 Score = 44.9 bits (104), Expect = 0.041, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 52/158 (32%), Gaps = 14/158 (8%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E ++L +++ P+ +E ++ + + ++ L E I ++ Sbjct: 9 ERSVLSSILFDPSRFEEISTKIDSKDFSYLPHRHIFEALKELHRLDLPLDEEFIVKKETP 68 Query: 544 R---GFGELLKQL--DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ--KE 596 ELL L + + + +I + Y + L + + Sbjct: 69 ERPIDREELLYILGTNPISSIEAYVNEIKDRSIKRELHRLANTIREYSQKEELESEQILD 128 Query: 597 EIEKQIAQVTAKGE-------AEKTAILISILHEVHIQ 627 +E ++ +++ E E T + + ++ + Sbjct: 129 HLESELYKISQDNENRDFKEAKEVTLATLEHIKKMKER 166 >gi|313815792|gb|EFS53506.1| DivIVA domain protein [Propionibacterium acnes HL059PA1] Length = 362 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 I + + + +N L+ L + +++ Sbjct: 23 YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +++L Q + S + + ++A L + L Q EE+ + + Sbjct: 80 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + + A L S + Q+ +S A Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167 >gi|297700425|ref|XP_002827242.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase TAO1-like [Pongo abelii] Length = 862 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + + K+ + + K+ + Sbjct: 459 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 512 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479 R ++ + +++ E KK +H + Q+ S + +K Sbjct: 513 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 572 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+E+ L + + + L + L + + + Sbjct: 573 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 619 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591 RL E +L ++ +T + + ++ Q L + + L Sbjct: 620 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 679 Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R+ E+E+++ + + E+ L + E + + +++E IE Sbjct: 680 IRMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 737 Query: 640 GFGKMSGRL 648 F S RL Sbjct: 738 AFDSESMRL 746 >gi|260913786|ref|ZP_05920261.1| hemagglutination activity domain protein PfhB [Pasteurella dagmatis ATCC 43325] gi|260632099|gb|EEX50275.1| hemagglutination activity domain protein PfhB [Pasteurella dagmatis ATCC 43325] Length = 2845 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 87/293 (29%), Gaps = 14/293 (4%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + Y ++ + ++++ E+ + + + K+ Sbjct: 863 PVAITSLYASENWKAYQILRHVKHSPIFQKAMEHAF-GSNWQAMSYQAMSAKWKEFKKNP 921 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 YY F K N + G + ++ + +++K Sbjct: 922 TSFKYYPSEKARIFAGTFDASTKNIQNGELSEKGNFDSKLTIGKHSLTVPNADFRSEVNK 981 Query: 479 KPSLREA-----ALLLTLINHPAILQEQYQELADIR-YDNNELQKLWSFLFSDFVEQKYF 532 + + L L++ P + + +L + E Q + Sbjct: 982 EILELNKDGVDLSALSDLLDIPNLFIDNSVQLEKTTTEIDAEDQAILDKEPDYLNPNLLR 1041 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK------ 586 +E +L E + D + E D+++ + + K Sbjct: 1042 QNKEFLDKLLIDLNEEKYVKDDAYYDARRTNNERFENLPRDLQRRLHEEFSRRKEEQNAK 1101 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R LL + KEE E + Q + E+ + + + ++ ++E +I+ Sbjct: 1102 RLELLRKAKEEKEAKNQQRNDNYKVEEKRLENDKIIK-QKELEAQANEEKLIK 1153 >gi|224368962|ref|YP_002603126.1| DnaB [Desulfobacterium autotrophicum HRM2] gi|223691679|gb|ACN14962.1| DnaB [Desulfobacterium autotrophicum HRM2] Length = 456 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 12/100 (12%), Positives = 29/100 (29%), Gaps = 6/100 (6%) Query: 464 QRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLF 523 + + K+ E ALL ++ L + L + +++++ + Sbjct: 2 KETPHKDPLLTKVPPHDIDAEEALLSAVLIDNENLFDVIDLLKPEDFYKKAHKRIFNAIL 61 Query: 524 SDFVEQKYFLPEEIH------QRLCERGFGELLKQLDRQV 557 F + + + L G LL + Sbjct: 62 ELFSKDEPADLVTVATRLKEKDELESSGGAALLASIADSA 101 >gi|148274143|ref|YP_001223704.1| putative replicative DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783383|ref|YP_001711717.1| replicative DNA helicase [Clavibacter michiganensis subsp. sepedonicus] gi|147832073|emb|CAN03046.1| putative replicative DNA helicase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157953|emb|CAQ03163.1| replicative DNA helicase [Clavibacter michiganensis subsp. sepedonicus] Length = 459 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 53/162 (32%), Gaps = 10/162 (6%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + L E + + ++ + + +++ I + + + ++ + Sbjct: 11 ERDERDKRAGHERTPPHDLLAEQSAIGGMLLSKDAVADAVEQVRAIDFYIPKHEIIFDAI 70 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 S + + + L + L +L R L + T+ Y + Sbjct: 71 LSLYSHGEPTDVIAVTDELTK------LGELSRAGGADYLHTLTSVVPTAANAGFYASIV 124 Query: 583 ALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 A + + R+ E +I Q+ E E ++ + E+ Sbjct: 125 A----EKAVLRRLVEAGTRIVQMGYASEGEVVDLVNNAQAEI 162 >gi|110623253|emb|CAI94865.2| heat shock protein 101 [Triticum turgidum subsp. durum] Length = 917 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + + Sbjct: 394 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 447 Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618 + D+R Q Y++ + L +++EE++ + + + + + A L Sbjct: 448 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 507 Query: 619 SILHEVHIQIHQIESQ 634 L E+ I ++E + Sbjct: 508 GALQEIDAAIAKLEGE 523 >gi|121595260|ref|YP_987156.1| nuclease [Acidovorax sp. JS42] gi|120607340|gb|ABM43080.1| ParB domain protein nuclease [Acidovorax sp. JS42] Length = 683 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 28/292 (9%), Positives = 77/292 (26%), Gaps = 19/292 (6%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + + + + + + + A L + + D Sbjct: 100 HRIAKDWQVPCLQVADGTARTASLTENVQREAMHPADQFEAFAALVAEGRPIEDIAADFS 159 Query: 420 LRYYYSQ---AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKL 476 + Q + + +L Y + + + + + Sbjct: 160 VTPLVVQRRLKLANVSPRLMGDYRADAVSLDQLMALSITDDHAAQEAAFYDAPQWQRQPS 219 Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 + + L E + HP + + LF++ Y Sbjct: 220 ALRERLTEREIDAY--RHPLVRFVGLDAYEQ------AGGGIRRDLFAEGDAGVYLTDAA 271 Query: 537 IHQRLCERGFGELLKQLDRQ-----VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL 591 + +RL + + ++ + G+ A A R+ + +R L Sbjct: 272 LLERLAQDKLAGIAAEVKAEGWAWADATPGVTHADLHAFQRAPRERREPNKREAQRIEKL 331 Query: 592 SRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGK 643 + +E+ + + + +K L + Q+ +E ++G+G Sbjct: 332 QAKLQEVAEAVDAAMDAEDEDKADALQEEGERLGEQLQALEDG---LQGYGA 380 >gi|212449|gb|AAA48985.1| nonmuscle myosin heavy chain [Gallus gallus] Length = 1976 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 103/288 (35%), Gaps = 22/288 (7%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + R + + EK I+ + E E ++ ELE L + + +++++ Sbjct: 876 EEMERKHQQLLEEKNILAEQLQAETELFAEAEEMRARLAAKKQELEEILHDLESRVEEEE 935 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R Q + ++Q Q + +K + + M+ ++ + Sbjct: 936 ERNQILQNEKKKMQGHIQDLEEQLDEEEGARQKLQLEKVTAEAKIKKMEEEILLLEDQNS 995 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW--SFLFSDFVEQKYFLPEEI 537 L+E L+ + E +LA+ L KL + +E++ E+ Sbjct: 996 KFLKEKKLME------DRIAECTSQLAEEEEKAKNLAKLKNKQEMMITDLEERLKKEEKT 1049 Query: 538 HQRLCER---------GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRF 588 Q L + + + +L Q+ + + A E +++ + + Sbjct: 1050 RQELEKAKRKLDGETTDLQDQIAELQAQIEELKIQLAKKE---EELQAALARGDEEAVQK 1106 Query: 589 RLLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 + E++ QIA++ E+EK + + ++ ++ ++++ Sbjct: 1107 NNALKVIRELQAQIAELQEDLESEKASRNKAEKQKRDLSEELEALKTE 1154 Score = 37.9 bits (86), Expect = 5.9, Method: Composition-based stats. Identities = 24/243 (9%), Positives = 79/243 (32%), Gaps = 22/243 (9%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE---HSGYGRYWKKNA 454 + + +L +++ ++++ + Y + ++RLQQ + + +K Sbjct: 1391 EENKKKLLKDMESLSQRLEEKAMAYDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQ 1450 Query: 455 RHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNE 514 + DQ ++ + + + + + RE ++ + + L + Sbjct: 1451 KKFDQMLAEEKNISARYAEERDRAEAEAREKETKAL-----SLARALEEALEAKEEFERQ 1505 Query: 515 LQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDV 574 ++L + + + + +L++ R + ++ Sbjct: 1506 NKQLRADMEDLMSSKDDVGKN--------------VHELEKSKRTLEQQVEEMRTQLEEL 1551 Query: 575 RQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q R + + + ++ Q + EK +L+ + E+ ++ Q Sbjct: 1552 EDELQATEDAKLRLEVNMQAMKAQFERDLQARDEQNEEKKRMLVKQVRELEAELEDERKQ 1611 Query: 635 EAM 637 A+ Sbjct: 1612 RAL 1614 >gi|324993278|gb|EGC25198.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK405] gi|324995419|gb|EGC27331.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK678] gi|327461549|gb|EGF07880.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1] gi|327489403|gb|EGF21196.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1058] Length = 641 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ + L + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALRE---ETEQVDLDKPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ + S L E QI Q+ + +EAM+E Sbjct: 599 QLQEAM---QATNDASELMESQQQIDQLTAAQEEAMLE 633 >gi|309362042|emb|CAP28691.2| hypothetical protein CBG_09100 [Caenorhabditis briggsae AF16] Length = 1182 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 29/272 (10%), Positives = 94/272 (34%), Gaps = 4/272 (1%) Query: 372 EKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDR 431 + + E+ R + + + + + ++ R +R Sbjct: 525 RRQLAEAEKARQAEIDRVSWGVFATGGNLNYFQQAAIYAEQERMAMERERELERIQQEER 584 Query: 432 LQQLFQKYITEHSGYGRYWKKNARHR-DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 +++ + E + ++ R + +++ ++R+ Q K R+ + Sbjct: 585 KREMERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKQKILEEERQRKIKEQ 644 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELL 550 + I +EQ + E + + ++ E + Q+ ER +L Sbjct: 645 MREMEKIRKEQEEAREIEMRRLEEERAREMERVREEEMERQQQIERLRQQEEERKRKKLE 704 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + + + + + ++ + Q L ++ ++L ++ EE + I + + + Sbjct: 705 MEKEERKKALIEEERKRKVLEKELEERRQAILEEERKRKILEKEMEERQTAIYEEQQRRK 764 Query: 611 AEKT---AILISILHEVHIQIHQIESQEAMIE 639 AE+ + ++ Q+ ++ + + +E Sbjct: 765 AEEERRKQKEMEERKQIQEQMRKVSEERSRLE 796 >gi|253755120|ref|YP_003028260.1| DNA primase [Streptococcus suis BM407] gi|251817584|emb|CAZ55331.1| DNA primase [Streptococcus suis BM407] Length = 358 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 44 PFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL 92 P HD SF + FS ++GD + F+ + G +F E+V L Sbjct: 34 PDHD----SFRIFADTNTFKWFSRDIQGDVIDFVQLVAGVTFKEAVSYL 78 >gi|189460390|ref|ZP_03009175.1| hypothetical protein BACCOP_01029 [Bacteroides coprocola DSM 17136] gi|189432942|gb|EDV01927.1| hypothetical protein BACCOP_01029 [Bacteroides coprocola DSM 17136] Length = 862 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 33/272 (12%), Positives = 75/272 (27%), Gaps = 41/272 (15%) Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY 423 R E L + L +DM + + + +I Sbjct: 220 RILRGDVPENLKNKQLFSLDMGALVAGAKYKGEFEERLKSVINEVTKSDGNI------IL 273 Query: 424 YSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + I + + + + + R + Q K K Sbjct: 274 FIDEIHTLVGAGKGEGAMDAANILKPALARGELRSIGATTLDEYQKYFEKDKA------L 327 Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E +++ P + L + R+ + Sbjct: 328 ERRFQTVMVDEPDTASSI---------------SILRGLKERYENHHQV-------RIKD 365 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 ++ +R + D + I + + A L L + +EIE+++ Sbjct: 366 EAIIAAVELSNRYITDR----FLPDKAIDLMDEA---AAKLRMERDSLPEELDEIERRLK 418 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 Q+ + EA K + L +++ +I +++ QE Sbjct: 419 QLEIEREAIKREKDEAKLAQLNKEIAELKEQE 450 >gi|197294447|ref|YP_001798988.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] gi|171853774|emb|CAM11706.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] Length = 427 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 52/160 (32%), Gaps = 27/160 (16%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL TL+ +P + + + N + + ++ + ++ + + L Sbjct: 4 AERALLGTLLLNPEKMDAVINLVNTNNFSNPKHRCIFETMKQLKLQNREINYVTVGSVLD 63 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + +D + + A + + Y + R L +++ + Sbjct: 64 NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENTLKRDLLGLIKQLPTAL 115 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 + K+ + + L V Q +EGF Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136 >gi|205696376|sp|A0JN62|CE120_BOVIN RecName: Full=Centrosomal protein of 120 kDa; Short=Cep120; AltName: Full=Coiled-coil domain-containing protein 100 Length = 987 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 90/280 (32%), Gaps = 13/280 (4%) Query: 359 PDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQ 418 P + E + + K++ +E + + ++ + K Sbjct: 646 PRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVK--KKV 703 Query: 419 KLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSK 478 ++ L L ++ ++ + ++ + + +Q S+ + K Sbjct: 704 AEYNILEGKLQKTLIDLEKREQQLAIAESELQRERRELKSERERNLQELQDSIRRAKEDC 763 Query: 479 KPSL-REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 + E + L LQ+Q + + + + L +Q + Sbjct: 764 VHQVELERLKMKQLEEDKHRLQQQLNDAEN------KYKTLEKEFHQFKDQQSSKPEIRL 817 Query: 538 HQRLCERGFG--ELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQK 595 + EL ++L+ + + + ++ + Q+ + L +Q+ Sbjct: 818 QSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQES--QMARLKKQQ 875 Query: 596 EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 EE+E+ + A E + L ++ +++++ QE Sbjct: 876 EELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQE 915 >gi|114578183|ref|XP_001156304.1| PREDICTED: dynactin 1 isoform 8 [Pan troglodytes] Length = 1223 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.6 bits (85), Expect = 6.7, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|114777957|ref|ZP_01452871.1| DnaB helicase [Mariprofundus ferrooxydans PV-1] gi|114551744|gb|EAU54296.1| DnaB helicase [Mariprofundus ferrooxydans PV-1] Length = 445 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 52/185 (28%), Gaps = 21/185 (11%) Query: 477 SKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEE 536 E A+L ++ P L+ L + ++ + + + Sbjct: 2 PPHAHDAERAVLGGVMLDPEALERLEGSLRPEHFYVGANSHIFHAILDLSTKGQPIDALT 61 Query: 537 IHQRLCER------GFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588 + L +R G L +L V + + +R+ + + Sbjct: 62 VKDYLEQRDELAGSGGEAYLAELINAVPTSANVRHYADIVRERSVLRELLSACSKISRDV 121 Query: 589 -----RLLSRQKEEIEKQI-------AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 R ++ + EK I + +++ E+ + + ++ Sbjct: 122 YDESGREVNEHLDLAEKNILAVAENFNRARPAFNK-MGELMVQSYKELEARYAEKKAVTG 180 Query: 637 MIEGF 641 + GF Sbjct: 181 VSTGF 185 >gi|50842252|ref|YP_055479.1| putative immunogenic protein antigen 84 [Propionibacterium acnes KPA171202] gi|289426110|ref|ZP_06427856.1| DivIVA domain protein [Propionibacterium acnes SK187] gi|289426868|ref|ZP_06428594.1| DivIVA domain protein [Propionibacterium acnes J165] gi|50839854|gb|AAT82521.1| putative immunogenic protein antigen 84 [Propionibacterium acnes KPA171202] gi|289153275|gb|EFD01990.1| DivIVA domain protein [Propionibacterium acnes SK187] gi|289159957|gb|EFD08135.1| DivIVA domain protein [Propionibacterium acnes J165] gi|313764727|gb|EFS36091.1| DivIVA domain protein [Propionibacterium acnes HL013PA1] gi|313807253|gb|EFS45740.1| DivIVA domain protein [Propionibacterium acnes HL087PA2] gi|313813199|gb|EFS50913.1| DivIVA domain protein [Propionibacterium acnes HL025PA1] gi|313818299|gb|EFS56013.1| DivIVA domain protein [Propionibacterium acnes HL046PA2] gi|313820061|gb|EFS57775.1| DivIVA domain protein [Propionibacterium acnes HL036PA1] gi|313823130|gb|EFS60844.1| DivIVA domain protein [Propionibacterium acnes HL036PA2] gi|313827832|gb|EFS65546.1| DivIVA domain protein [Propionibacterium acnes HL063PA2] gi|314915218|gb|EFS79049.1| DivIVA domain protein [Propionibacterium acnes HL005PA4] gi|314918553|gb|EFS82384.1| DivIVA domain protein [Propionibacterium acnes HL050PA1] gi|314919816|gb|EFS83647.1| DivIVA domain protein [Propionibacterium acnes HL050PA3] gi|314925483|gb|EFS89314.1| DivIVA domain protein [Propionibacterium acnes HL036PA3] gi|314931831|gb|EFS95662.1| DivIVA domain protein [Propionibacterium acnes HL067PA1] gi|314955987|gb|EFT00385.1| DivIVA domain protein [Propionibacterium acnes HL027PA1] gi|314958382|gb|EFT02485.1| DivIVA domain protein [Propionibacterium acnes HL002PA1] gi|314960266|gb|EFT04368.1| DivIVA domain protein [Propionibacterium acnes HL002PA2] gi|314968090|gb|EFT12189.1| DivIVA domain protein [Propionibacterium acnes HL037PA1] gi|314978252|gb|EFT22346.1| DivIVA domain protein [Propionibacterium acnes HL072PA2] gi|314987716|gb|EFT31807.1| DivIVA domain protein [Propionibacterium acnes HL005PA2] gi|314990195|gb|EFT34286.1| DivIVA domain protein [Propionibacterium acnes HL005PA3] gi|315084582|gb|EFT56558.1| DivIVA domain protein [Propionibacterium acnes HL027PA2] gi|315085918|gb|EFT57894.1| DivIVA domain protein [Propionibacterium acnes HL002PA3] gi|315088664|gb|EFT60640.1| DivIVA domain protein [Propionibacterium acnes HL072PA1] gi|315098273|gb|EFT70249.1| DivIVA domain protein [Propionibacterium acnes HL059PA2] gi|315101036|gb|EFT73012.1| DivIVA domain protein [Propionibacterium acnes HL046PA1] gi|315107087|gb|EFT79063.1| DivIVA domain protein [Propionibacterium acnes HL030PA1] gi|315108228|gb|EFT80204.1| DivIVA domain protein [Propionibacterium acnes HL030PA2] gi|327330625|gb|EGE72371.1| putative immunogenic protein antigen 84 [Propionibacterium acnes HL097PA1] gi|327442823|gb|EGE89477.1| DivIVA domain protein [Propionibacterium acnes HL013PA2] gi|327451045|gb|EGE97699.1| DivIVA domain protein [Propionibacterium acnes HL087PA3] gi|327453600|gb|EGF00255.1| DivIVA domain protein [Propionibacterium acnes HL083PA2] gi|328753078|gb|EGF66694.1| DivIVA domain protein [Propionibacterium acnes HL087PA1] gi|328753733|gb|EGF67349.1| DivIVA domain protein [Propionibacterium acnes HL020PA1] gi|328759177|gb|EGF72793.1| DivIVA domain protein [Propionibacterium acnes HL025PA2] gi|332675182|gb|AEE71998.1| putative immunogenic protein antigen 84 [Propionibacterium acnes 266] Length = 361 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 I + + + +N L+ L + +++ Sbjct: 23 YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +++L Q + S + + ++A L + L Q EE+ + + Sbjct: 80 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + + A L S + Q+ +S A Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167 >gi|315927297|gb|EFV06641.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 451 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I +++ + Q ++ + + ++ + + Sbjct: 3 LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 60 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E + V++ L R EI +I Sbjct: 61 KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 120 Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627 +V ++ + ++ + E Q Sbjct: 121 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 153 >gi|91202833|emb|CAJ72472.1| similar to structural maintenance of chromosome (smc) seggregation ATPase protein [Candidatus Kuenenia stuttgartiensis] Length = 1207 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 33/233 (14%), Positives = 81/233 (34%), Gaps = 11/233 (4%) Query: 405 EIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQ 464 E I++ R + + L Q + + K+ R + Sbjct: 755 EEESDEINGEIENTHEREILLRERLEVLNQRHEALKEQIEETSMLVKEKEVIRKEMQEEI 814 Query: 465 RLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQ-KLWSFLF 523 ++ L + + K +L TL A LQE +++ DI ++ Q K++ Sbjct: 815 MSLKVMLAQKEEKKD------SLAETLNKLSADLQEMEEQVRDIADEHKNCQQKIFDAEI 868 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 +++ + + + + L +++R A + E N + Q Sbjct: 869 EIKNTEQHIEALQSEKIVIDERTENLSAEIERNDYHAAELRTSLEGNQAEYGSVEQHLQE 928 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 L + + + +E++I + + + L S E+ ++ ++ ++A Sbjct: 929 LRFKENEYNIRITNLEERIREEYKL----EISELHSNREEIEQELSSLKEKQA 977 Score = 41.0 bits (94), Expect = 0.60, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 15/210 (7%) Query: 432 LQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL 491 I + + R + + + L K K E LL Sbjct: 133 FGSNAYSVIEQGNVDALLRANAHERRALFEEAAGISRFKLQKKAALSKLEHVEQNLLRI- 191 Query: 492 INHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE--RGFGEL 549 I++E ++L I+ ++ ++ + + K L + ++ L + E Sbjct: 192 ---GDIVEELQKQLRSIKVQASKARR-YQEYREQLKKLKVGLSLKNYRELGDNKASVSEQ 247 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKG 609 +KQ++ Q + T + I +V + +Q L + L +K +E QI++ Sbjct: 248 IKQIEEQRQKVTTIIDTLKLQIDEVEEALEQ---LELQSAALQTEKMSLESQISK----- 299 Query: 610 EAEKTAILISILHEVHIQIHQIESQEAMIE 639 + +K + E+ + ++ Q+ +E Sbjct: 300 DEDKIKYNTERIKELKTRRERLLEQQKTLE 329 >gi|54020645|ref|YP_116172.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232] gi|53987818|gb|AAV28019.1| replicative DNA helicase [Mycoplasma hyopneumoniae 232] Length = 463 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 EA ++ L+ +P + L + L ++ + + + K + Q L Sbjct: 11 LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70 Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 G + + L ++ + L + + D+++ + Sbjct: 71 RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129 Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 S + EI ++I + + E + I ++ + ++ + + +I+G Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181 >gi|57768826|ref|NP_001003522.1| TATA element modulatory factor [Danio rerio] gi|50417102|gb|AAH77134.1| TATA element modulatory factor 1 [Danio rerio] Length = 1136 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 35/237 (14%), Positives = 83/237 (35%), Gaps = 30/237 (12%) Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + ++ ++ + E + +++ + +R + + K K E Sbjct: 581 ELIKEKEEQIRELLEEGEKLSKQQLQHSNIIKKLRVKERESDAQIAKQTKKLKEQEEELK 640 Query: 487 LLLTLI--------NHPA-------ILQEQYQELADIRYDNNELQK----LWSFLFSDFV 527 LL ++ H +++ Q +EL+ ++ + ELQ+ L + L S + Sbjct: 641 LLQQVMDGKEEIEKQHRENIKKLNAVVERQEKELSKLQTSSEELQEKSRSLQAALDSSYK 700 Query: 528 EQKYFLPEEIHQRLCERGF---------GELLKQLDRQVRDAGLWSATTEANIVDVRQGY 578 E + + EL L++ D+ L + D+R Sbjct: 701 ELAELHKANASKDSEAQELALSREVQAKEELSLALEKVQEDSRLQQEALANQVADLRVAL 760 Query: 579 QQALALY-KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q+A K+ L + E++++I + E + + S + QI +++ Sbjct: 761 QRAEQQQAKKEDYLREEISELQQRIQEAE-TRNQELSQSVTSATRPLLRQIENLQAT 816 >gi|146297588|ref|YP_001181359.1| hypothetical protein Csac_2596 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411164|gb|ABP68168.1| hypothetical protein Csac_2596 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 373 Score = 44.9 bits (104), Expect = 0.042, Method: Composition-based stats. Identities = 38/304 (12%), Positives = 92/304 (30%), Gaps = 42/304 (13%) Query: 53 FHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRL----------AAI------- 95 + N K ++C C V G+ L + L E+ + L A Sbjct: 48 LYINVYKNTFFCHKCGVGGNALQLYAWLSNMDTKEAYKELTQILTKGTKRARKAVAEPTV 107 Query: 96 -AGVPLPVVDPKI-EKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA 153 + + + E+++K+ + I+L+++ D++ +L RG+ Sbjct: 108 NYNITVKSDNLAPVEQRDKVYREFIKLLDL-------------DEKHKEHLLLRGLTETF 154 Query: 154 IEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSS 213 I+ R+ + + + +E + + + P + Sbjct: 155 IKFKSYKSLNVRDERKRKEICKTLIEKGLSLEGVPGFFRHSDGSWDFINYDGFCIPAKDF 214 Query: 214 RGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSF 273 G++ R + + + S + F G A N++ + + + +F Sbjct: 215 EGRIQGLQVRIVKENST-----SGKYRWFSSGNVPTGTS-AKNFIHVTGSFNEEKCRRAF 268 Query: 274 IILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWK----LSPRIVLCFDGDDPGLR 329 II D+ S G + + + ++ + + D D + Sbjct: 269 IIEGILKADICSYLMDGELFIGIPGIANSHDSAVEVVKNLGLKYEGEVYVVVDNDYYDKK 328 Query: 330 AAYK 333 Sbjct: 329 EVQD 332 >gi|327332201|gb|EGE73938.1| putative immunogenic protein antigen 84 [Propionibacterium acnes HL096PA3] Length = 361 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 I + + + +N L+ L + +++ Sbjct: 23 YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +++L Q + S + + ++A L + L Q EE+ + + Sbjct: 80 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + + A L S + Q+ +S A Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167 >gi|296235207|ref|XP_002762807.1| PREDICTED: dystrophin [Callithrix jacchus] Length = 3682 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 48/423 (11%), Positives = 115/423 (27%), Gaps = 22/423 (5%) Query: 205 RLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRK 264 LI ++ + + RT+ + N ++L N LN + K + Sbjct: 2526 ELITAAQNLKNKTSNQEARTIITDRIERIQN----QWDEVQEHLQNRRQQLNEMLKDSTQ 2581 Query: 265 DVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFD-- 322 + + +L + + S + T+ + L + + + D Sbjct: 2582 WLEAKEEAEQVLGQARAKLESWKEGPYTIDAIQKKITETKQLAKDLHQWQINVDVANDLA 2641 Query: 323 ---------GDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEK 373 D + + I+ + L F Sbjct: 2642 LKLLRDYSADDTRKVHMITENINASWGSIQKRVSEREAALEETHRLLQQF-PLDLEKFLA 2700 Query: 374 LIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQ 433 + E+ ++L + R EL ++ I+ Y+ R+ Sbjct: 2701 WLTEAETTANVLQDATHKERLLEDSKGVKELMKQWQDLQGEIEAHTDIYHNLDENSQRIL 2760 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-I 492 + + R N + + + S + K+ L LL+ L + Sbjct: 2761 RSLEGSDDAVLLQRRLDNMNFKWSELRKKSLNIRSHLEASSDRWKRLHLSLQELLVWLQL 2820 Query: 493 NHPAILQE--QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGEL- 549 + ++ + ++ N+ + L + E + L E+ L Sbjct: 2821 KDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTK-EPVIMSTLETVRIFLTEQPLEGLE 2879 Query: 550 -LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 L Q R++ T + + L R+ +E +++ ++ Sbjct: 2880 KLYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDEALERLQELQEA 2939 Query: 609 GEA 611 + Sbjct: 2940 TDE 2942 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 76/236 (32%), Gaps = 32/236 (13%) Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L + +K + + K K S R ++L+ + L E + Sbjct: 1694 LLDESEKKKPQQKEDVLKRLKAELNDIRPKVDSTRDQAANLMANRGDHCRKLVEPQISEL 1753 Query: 491 -----LINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 I+H + L ++ N+++QKL L ++ + E+ ++ + E Sbjct: 1754 NHRFAAISHRIKTGKASIPLKELEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDN 1813 Query: 546 ---FGELLKQLDRQVRDAGLWSATTEANIVD------------------------VRQGY 578 ELL++ D + E I + Sbjct: 1814 EGTVKELLQRGDNLQQRITDERKREEIKIKQQLLQTKHNALKVRIFGLRSQRRKKALEIS 1873 Query: 579 QQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 Q ++ L + ++IEK++A + + K + L + +++ + Q Sbjct: 1874 HQWYQYKRQADDLLKCLDDIEKKLASLPEPRDERKVKEIDRELQKKKEELNAVRRQ 1929 >gi|295130340|ref|YP_003581003.1| DivIVA domain protein [Propionibacterium acnes SK137] gi|291375113|gb|ADD98967.1| DivIVA domain protein [Propionibacterium acnes SK137] gi|313772523|gb|EFS38489.1| DivIVA domain protein [Propionibacterium acnes HL074PA1] gi|313809759|gb|EFS47480.1| DivIVA domain protein [Propionibacterium acnes HL083PA1] gi|313830668|gb|EFS68382.1| DivIVA domain protein [Propionibacterium acnes HL007PA1] gi|313833888|gb|EFS71602.1| DivIVA domain protein [Propionibacterium acnes HL056PA1] gi|314973670|gb|EFT17766.1| DivIVA domain protein [Propionibacterium acnes HL053PA1] gi|314976263|gb|EFT20358.1| DivIVA domain protein [Propionibacterium acnes HL045PA1] gi|314983528|gb|EFT27620.1| DivIVA domain protein [Propionibacterium acnes HL005PA1] gi|315096290|gb|EFT68266.1| DivIVA domain protein [Propionibacterium acnes HL038PA1] gi|327325926|gb|EGE67716.1| putative immunogenic protein antigen 84 [Propionibacterium acnes HL096PA2] gi|327446194|gb|EGE92848.1| DivIVA domain protein [Propionibacterium acnes HL043PA2] gi|327447823|gb|EGE94477.1| DivIVA domain protein [Propionibacterium acnes HL043PA1] gi|328760577|gb|EGF74145.1| putative immunogenic protein antigen 84 [Propionibacterium acnes HL099PA1] Length = 361 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 45/148 (30%), Gaps = 3/148 (2%) Query: 489 LTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 I + + + +N L+ L + +++ Sbjct: 23 YRAIEVDDFVDKVEAAFMTLTDENERLKAQVEAL-RSGEPGEQRPDQDLLN--ENEHLRA 79 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 +++L Q + S + + ++A L + L Q EE+ + + Sbjct: 80 QVEELRSQQNGRSVNSGEVDRAKAAQQDAEKRARQLEQERVSLQSQIEELRQAARRPGQD 139 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + + A L S + Q+ +S A Sbjct: 140 IDPAEVARLRSENERLGAQLRDAQSLAA 167 >gi|164425771|ref|XP_001728267.1| hypothetical protein NCU10836 [Neurospora crassa OR74A] gi|157071058|gb|EDO65176.1| predicted protein [Neurospora crassa OR74A] Length = 940 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 16/148 (10%), Positives = 56/148 (37%), Gaps = 8/148 (5%) Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL--CERGFGELLKQL 553 ++ + + + ++ N L + ++ + ++ +RL + G ++++ Sbjct: 138 KLVADVFGQFIVLKEKNERLSISHREVLDEYHRYRS-ELDDWKKRLDKEKEGLEDVIQSK 196 Query: 554 DRQVRDAGLWSATTEANIVD-----VRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 ++V A + ++ D L + ++ +E++K + A Sbjct: 197 VQEVLHLHAMRAKLQGDLEDSAKRAAMAAENAERELVRLKEDKEKELDELKKDKERELAA 256 Query: 609 GEAEKTAILISILHEVHIQIHQIESQEA 636 + +K L ++ + Q+ ++ +A Sbjct: 257 LKEDKEKELAALKEDQEQQLTKLREDQA 284 >gi|149036515|gb|EDL91133.1| dynactin 1, isoform CRA_b [Rattus norvegicus] Length = 1276 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 238 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 297 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 298 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 357 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 358 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 417 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 418 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 477 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 478 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 537 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 538 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 39.9 bits (91), Expect = 1.3, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 >gi|311260123|ref|XP_003128353.1| PREDICTED: coiled-coil alpha-helical rod protein 1-like [Sus scrofa] Length = 844 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 25/272 (9%), Positives = 80/272 (29%), Gaps = 17/272 (6%) Query: 369 TAFEKLIVESLPLVDMLWKRETENRSFNTPD--ERAELEIHLKNCINHIKDQKLRYYYSQ 426 KL+ ++ + T + + ++ I+ R Sbjct: 492 EEQLKLVANAVSSFQAWLQSTMAEVERATARLPSLSARLSYAVRKVHTIRGLMARKL--- 548 Query: 427 AIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 A+ Q+ + Q + +++ E Sbjct: 549 ALAQLRQESCPPPPPATEMNLELEQLREERNRLDAELQLSAHIIQQEVGRAREQGEVERQ 608 Query: 487 LLLTLINHPA-ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L + LQ + LA + ++ ++ + Q L ++ Sbjct: 609 KLSEVAQQLEQELQHTQESLASLGLQLEAARQ--------GQQESTAEAAGLRQELTQQQ 660 Query: 546 F---GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 L +++ + +E + + R+ + +A+ ++ + + +++E +++ Sbjct: 661 EIYGQALQEKVAEVETRLREQLSESERRLNEARREHTKAVVSLRQMQRKATREKERNQEL 720 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ + E+ L L E+ + + + Sbjct: 721 RRLQEEARKEEGQRLTQRLKELERDKNLMLAT 752 >gi|149633353|ref|XP_001506575.1| PREDICTED: similar to restin [Ornithorhynchus anatinus] Length = 1264 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 15/255 (5%) Query: 394 SFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKN 453 D R + +D LR +R RL+ + S + Sbjct: 486 QRELEDTRVATVSEKSRIMELERDLALREKEVIELRRRLESSKPAGEVDASLSLLQEIGS 545 Query: 454 ARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNN 513 + + S + + +K + + L LI+ + +E + + + N Sbjct: 546 LQEKLTTISSDHQHEITSLKERFGANEETHQKELKALLISTEKLRKENESLKSKLDHANK 605 Query: 514 ELQ---KLWSFLFSDFVEQKYFLPEEIHQRLC------ERGFGELLKQLDRQVRDAGLWS 564 E LW + EE+ F EL Q+++ + Sbjct: 606 ENSDVIALWKSKLESAIASHQQAMEELKVSFSKGVGADSAEFAELKTQIEKLRLEYQSEM 665 Query: 565 ATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 T + R + Q + K L EE E+ + +K E + L E+ Sbjct: 666 ETFKLKRDSERSAHAQEIEALK--VKLKETIEEKERSLETFQSKLENAED----QHLVEM 719 Query: 625 HIQIHQIESQEAMIE 639 +++++ E ++ Sbjct: 720 EDTLNKLQEAEIKVK 734 >gi|149642611|ref|NP_001092404.1| dynactin subunit 1 [Bos taurus] gi|148745416|gb|AAI42510.1| DCTN1 protein [Bos taurus] Length = 1239 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 106/356 (29%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E + A L +E + L D D E ++KL + + + + R Sbjct: 383 ERTIDELKEQVDAALGAEEMVETLTDRNLDLEEKVRKLKETVGDLEAINEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L QVRDA + + D +Q ++ L + ++R ++ Sbjct: 443 ETELELREQLDMAGAQVRDAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRALTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 42.2 bits (97), Expect = 0.25, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 66/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSF--LFSDFVEQKYFLPEEIH 538 L + + + + D + L + + VE+ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEAEVLRERVEELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAERTIDELKEQVDAALGAEEMVE 404 >gi|145532266|ref|XP_001451894.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124419560|emb|CAK84497.1| unnamed protein product [Paramecium tetraurelia] Length = 912 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 82/261 (31%), Gaps = 17/261 (6%) Query: 381 LVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 ++ E + + L++ N+ +Q L Y I D + Sbjct: 160 YLNAEIVDLKEQLQQRETEFNRYRQQILRSTGNNNNNQDLIAQYLSTIDDLRSKNSSLSR 219 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 + + K +R + + ++ H +++E Sbjct: 220 QLRERDSKIQNQEYEIEQLKKQLERRNDNKQQIDQSNQNEE------------HARLIKE 267 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDA 560 +L + EL +F+ E + ++ + + + L+Q++ Sbjct: 268 LSSKLQMLESKVQELDH-KAFVEQKKREDREKEIGKLKETVSTQEHQIQLQQIEIDNDKK 326 Query: 561 GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILIS- 619 + E + + + + L R +E +++I + E +K L+ Sbjct: 327 IIKYIQEETSKNQGGNNSASFIPHFNQE--LQRLQENTQREIRERNRLEEEKKQNELMRQ 384 Query: 620 -ILHEVHIQIHQIESQEAMIE 639 +EV ++ + Q+A IE Sbjct: 385 KEQNEVQRKVKEERDQQAKIE 405 >gi|73980509|ref|XP_866394.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 16 [Canis familiaris] Length = 1263 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 227 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 286 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 287 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 346 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 347 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 406 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 407 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 466 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 467 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 526 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 527 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 582 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 211 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 270 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 271 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 330 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 331 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 384 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 385 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 428 Score = 37.6 bits (85), Expect = 6.6, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 203 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 262 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 263 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 317 >gi|47210072|emb|CAF90125.1| unnamed protein product [Tetraodon nigroviridis] Length = 894 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%) Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462 ++ + D + Q +D+L+ +K+ + ++ + + Sbjct: 60 RRNDQIRRLEAKLSDYAEQLRVMQRTKDKLELALEKHQDSSIKKLQEQNESHQVNRTRMA 119 Query: 463 SQRLMQSSLVKGKLSKKPSLRE-------AALLLTLINHPAILQEQYQELADIRYDNNEL 515 + + +K ++ E A + + A+ Q++ + EL Sbjct: 120 ESMAVALEKKDQEWMEKMAVVEKEKTALSAQIEEMMDQSLALFQKRDDLDELEGFQQQEL 179 Query: 516 QKLWSFLF----SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANI 571 K+ L ++ +E +R E+ L + S Sbjct: 180 AKVKHMLLKKEEQLSQQEHQLQQKEAALHSAKRNLSEVQGSLQVLKQRHEESSRLNAELE 239 Query: 572 VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI--QIH 629 ++ + + R L RQ +++ I Q++ + L S L + Sbjct: 240 IEREELLLLKEESDSKVRSLERQCGDLQSAIQQLSEDFHKRTVSALESSLQALQSGHDSL 299 Query: 630 QIESQEA 636 +++ Q+A Sbjct: 300 RLQQQKA 306 >gi|85097119|ref|XP_960385.1| hypothetical protein NCU04826 [Neurospora crassa OR74A] gi|28921875|gb|EAA31149.1| predicted protein [Neurospora crassa OR74A] Length = 1422 Score = 44.9 bits (104), Expect = 0.043, Method: Composition-based stats. Identities = 32/274 (11%), Positives = 84/274 (30%), Gaps = 14/274 (5%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 ++ + + + + + + + +++ + D Sbjct: 477 LKTKFAEQQQDGDAGAAEAHEKAIQELKASHEGTIAELQKKIDDLSSAQAANDADATKLD 536 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 I + +L S K A + + + + K + Sbjct: 537 ALESQISELKAKLEAAEQNAESAKAELESKLASFASLEAKVADMEAELSAAKEEATKAAA 596 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 A L + + Q +A ++ + ++L + E + E +L Sbjct: 597 THAELQKRIDELTEETKSQEAIIAKLKEETASAEELQKRIEQLTEENTTY--EATLSKLK 654 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 E + L +++++ + EA I ++ + L KR L ++ E I Sbjct: 655 EE--SSAAEDLQKRIQELEAEAKDKEATIAQLKDNTTGSDELQKRIDELGNDLKDKEATI 712 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEA 636 AQ+ ++ E+ +I ++ ++EA Sbjct: 713 AQL---------KEELAAAEELQKRIEEL-TEEA 736 >gi|325690048|gb|EGD32052.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK115] Length = 641 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 17/158 (10%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + L + Sbjct: 482 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATQIIELSETGSTLYLGDYDYYLEK 541 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E L++ Q + ++ ++ L +R L Q E+++ QI+ Sbjct: 542 KAEQEALREETEQASPD---KPAPANDYQLQKENQKEQRRLARRLEQLEAQIEDLDSQIS 598 Query: 604 QVTAKGEAEKTAILISILHEVHIQIHQIES--QEAMIE 639 Q+ + + L E QI Q+ + +EAM+E Sbjct: 599 QLQKAM---QATNDAAELMESQQQIDQLTAAQEEAMLE 633 >gi|301122913|ref|XP_002909183.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262099945|gb|EEY57997.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 891 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 32/282 (11%), Positives = 90/282 (31%), Gaps = 9/282 (3%) Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQK 419 + F ++ E V+ + D + ++ +K + Sbjct: 111 ERFTSEDKLDEWKASAEEKKLAVERRRAHLHKT--QAELDSLNAILRQVEKYNEEMKHEI 168 Query: 420 LRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKK 479 R + + + +K + Y + + + + + + + Sbjct: 169 ARTQRAAEKAEESMTVAEKDKVKQDLYIDRLNEQVKTLQDQLAANASQLKTQRMETQAAE 228 Query: 480 PSLREA--ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEI 537 +LREA + +LQ+ L ++ + LQ + + ++ E+ Sbjct: 229 ETLREAAAQMEAVAFEKKQLLQQWKSALIGMQQRDTALQATQAAISKVVEDELALSAEQR 288 Query: 538 HQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEE 597 +L ++ + L + + E +++ ++ L R LL++ ++ Sbjct: 289 GYKLSIEKAQQIHETLIATIERFNVELRFVEEQTQNLQAEFE---RLAARHELLAKSLKQ 345 Query: 598 IEKQIAQVTAKGEAEKTAILI--SILHEVHIQIHQIESQEAM 637 E Q++ +G+ ++ L + H +E + A Sbjct: 346 TEAQVSSAALEGKKLESEAAQVAQHLETTQRERHLLEDEIAA 387 >gi|114578179|ref|XP_001156593.1| PREDICTED: dynactin 1 isoform 13 [Pan troglodytes] Length = 1258 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.6 bits (85), Expect = 6.3, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|32484289|gb|AAH54370.1| Cux1 protein [Mus musculus] Length = 667 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 34/282 (12%), Positives = 97/282 (34%), Gaps = 16/282 (5%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 92 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 151 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 152 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 211 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLF--SDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + + + + +E++ + + L + E E + ++L L Sbjct: 212 ELFDLKTKYDEETTAKADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQLASQ 271 Query: 554 DRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIEKQI 602 ++ + A E I + + Q+ A + R S Q ++E+Q+ Sbjct: 272 IQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLEQQL 331 Query: 603 AQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 + + E+ + EV +++ ++S E A EG G Sbjct: 332 NAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 373 >gi|73980513|ref|XP_866414.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 18 [Canis familiaris] Length = 1276 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.6 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|88800246|ref|ZP_01115813.1| replicative DNA helicase [Reinekea sp. MED297] gi|88776961|gb|EAR08169.1| replicative DNA helicase [Reinekea sp. MED297] Length = 472 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 3/130 (2%) Query: 467 MQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDF 526 L + K E ++L L+ + L + NE ++L+ L Sbjct: 18 APDDLHQIKSPPHSLEAEQSVLGALMVDNQQWDNVSEILMPDDFYRNEHRQLYRMLMKLA 77 Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + L + +LL+ + V L T + + +L + Sbjct: 78 EANSPMDVITLGETLEKE---KLLEAVGGMVYITELAENTPSISNLVAYAKIVHERSLLR 134 Query: 587 RFRLLSRQKE 596 + ++ Sbjct: 135 QLITVANDIA 144 >gi|296223516|ref|XP_002757643.1| PREDICTED: dynactin subunit 1 isoform 1 [Callithrix jacchus] Length = 1278 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 240 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 299 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 300 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 359 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 360 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 419 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 420 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 479 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 480 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 539 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 540 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 595 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 224 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 283 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 284 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 343 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 344 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 397 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 398 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 441 Score = 37.6 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 216 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 275 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 276 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 330 >gi|228923296|ref|ZP_04086584.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836250|gb|EEM81603.1| hypothetical protein bthur0011_42750 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 786 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 19/162 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREQVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVIDQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R ++++QI + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---DLQRQIIEFNED 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQI-ESQEAMIE 639 + EK + ++ Q+ ++Q A ++ Sbjct: 565 RDERLLKAQKEGEEKVEAAKKEAEGIIQELRQLRKAQLANVK 606 >gi|194716533|gb|ACF93198.1| hypothetical protein [Sphingobacterium sp. PM2-P1-29] Length = 274 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Query: 9 KDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFH--DEKTPSFHCNDSKGFYYCFS 66 +L IP+ +++ Y+ + N+ + + PF+ DE+T S + + +Y S Sbjct: 4 DELK-RIPLISIL-NYLQIPCARMNSREAWFK--NPFNGGDERTASTKLDIHRNIWYSHS 59 Query: 67 CHVKGDHLSFLSA---LLGCS 84 G+++ FL S Sbjct: 60 EGFGGNNIDFLMKFLDTENLS 80 >gi|168275870|dbj|BAG10655.1| serine/threonine-protein kinase MRCK alpha [synthetic construct] Length = 1691 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 486 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 545 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 546 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 592 >gi|119610415|gb|EAW90009.1| myosin, heavy polypeptide 8, skeletal muscle, perinatal, isoform CRA_b [Homo sapiens] Length = 1737 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 28/245 (11%), Positives = 77/245 (31%), Gaps = 14/245 (5%) Query: 398 PDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHR 457 + + +L L+ H++ + + + RLQ + + + + + Sbjct: 1390 EEAKKKLAQRLQEAEEHVEAVNAKCASLEKTKQRLQNEVEDLMLDVERSNAACAALDKKQ 1449 Query: 458 DQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQK 517 +L ++G+ K L + +LQ + +EL +K Sbjct: 1450 RNFDKETQLHLDDALRGQEDLKEQ------LAIVERRANLLQAEIEELRATLEQTERSRK 1503 Query: 518 LW-SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 + L + + ++ + QL +V + S E Sbjct: 1504 IAEQELLDASERVQLLHTQNTSLINTKKKLENDVSQLQSEVEEVIQESRNAEEKAKKAIT 1563 Query: 577 GYQQALALYKRFR----LLSRQKEEIEKQIAQVTAKGEAEKTAIL---ISILHEVHIQIH 629 K+ + L R K+ +E+ + + + + + L + ++ ++ Sbjct: 1564 DAAMMAEELKKEQDTSAHLERMKKNLEQTVKDLQHRLDEAEQLALKGGKKQIQKLEARVR 1623 Query: 630 QIESQ 634 ++E + Sbjct: 1624 ELEGE 1628 >gi|1141790|gb|AAB09051.1| nonmuscle myosin-II heavy chain [Drosophila melanogaster] Length = 1972 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 51/339 (15%), Positives = 109/339 (32%), Gaps = 15/339 (4%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPL 381 D + AA + + L + ED + + L Sbjct: 1605 DEERKQRTAAVASKKKLEGDLKEIETTMEMHNKVKEDALKHAKKLQAQVKDALRDAEEAK 1664 Query: 382 VDML-WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYI 440 + ++ AE+ ++ + + ++ + + + K Sbjct: 1665 AAKEELQALSKEADGKVKALEAEVLQLTEDLASSERARRAAETERDELAEEIANNANKGS 1724 Query: 441 TEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQE 500 R + A ++ Q + L + S+K L+ L L N + Q+ Sbjct: 1725 LMIDEKRRLEARIATLEEELEEEQSNSEVLLDR---SRKAQLQIEQLTTELANEKSNSQK 1781 Query: 501 QYQELADIRYDNNELQKLWSFL-------FSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 A + N EL+ + + + + ++L G LL+Q Sbjct: 1782 NENGRALLERQNKELKAKLAEIETAQRTKVKATIATLEAKIANLEEQLENEGKERLLQQK 1841 Query: 554 DRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRFRLLSRQKEEIEKQIA-QVTAKGE 610 + D + T V Q +Q L R +LL R +E E+++ + T K + Sbjct: 1842 ANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEKTQKRK 1901 Query: 611 AEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSGRL 648 ++ + E ++ +I+ ++++ G G S RL Sbjct: 1902 YQRECEDMIESQEAMNREINSLKTKLRRTGGIGLSSSRL 1940 >gi|73980507|ref|XP_866381.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 15 [Canis familiaris] Length = 1269 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 233 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 292 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 293 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 352 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 353 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 412 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 413 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 472 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 473 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 532 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 533 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 588 Score = 40.3 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 217 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 276 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 277 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 336 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 337 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 390 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 391 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 434 Score = 37.6 bits (85), Expect = 6.4, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 209 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 268 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 269 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 323 >gi|326531902|dbj|BAK01327.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 916 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + + L S E + I + + + + Sbjct: 393 AIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALE------KEKDKASKARLVE 446 Query: 567 TEANIVDVRQGYQQALALYKRFRL-------LSRQKEEIEKQIAQVTAKGEAEKTAIL-I 618 + D+R Q Y++ + L +++EE++ + + + + + A L Sbjct: 447 VRKELDDLRDKLQPLTMKYRKEKERIDEIRKLKQRREELQFTLQEAERRMDLARVADLKY 506 Query: 619 SILHEVHIQIHQIESQ 634 L E+ I ++E + Sbjct: 507 GALQEIDAAIAKLEGE 522 >gi|253575770|ref|ZP_04853105.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251844813|gb|EES72826.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 295 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 25/184 (13%), Positives = 68/184 (36%), Gaps = 12/184 (6%) Query: 461 GPSQRLMQSSLVKGKLSKKPSLREAALLLTL-INHPA---ILQEQYQELADIRYDNNELQ 516 P + S G E AL+ L + + + + L + + E+ Sbjct: 119 TPEEAAPAGSADPGWEQVLTEGLEEALIGLLGMREREGKHLAADLGERLQRLEAIHGEMV 178 Query: 517 KLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQ 576 +L + ++ + RL E G +Q + + ++ ++ Sbjct: 179 RLAPEVVKEY-------RSRLKNRLAELLEGNYDEQRFAMEVAVFADRSNIDEELIRLKS 231 Query: 577 GYQQALALYKRFRLLSRQKEEIEKQI-AQVTAKGEAEKTAILISILHEVHIQIHQIESQE 635 ++Q +L + + + R+ + + +++ + G L++++ E+ ++ +I Q Sbjct: 232 HFEQCRSLLQAYEPVGRKLDFLIQEMNRETNTIGSKANHLALVNLVVELKAELEKIREQA 291 Query: 636 AMIE 639 A +E Sbjct: 292 ANLE 295 >gi|261416662|ref|YP_003250345.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373118|gb|ACX75863.1| ATPase AAA-2 domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326252|gb|ADL25453.1| protein ClpB [Fibrobacter succinogenes subsp. succinogenes S85] Length = 855 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 22/212 (10%), Positives = 71/212 (33%), Gaps = 12/212 (5%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLIN 493 Q ++KYI + S R ++ + + +++ L + AL+ + Sbjct: 310 QEYRKYIEKDSALERRFQPVQVSEPSEDEAISILRGIKDGFDAHHGVRLHDNALVAAVKL 369 Query: 494 HPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQL 553 + +++ I + + + + + +E+ ++ E+ + + Sbjct: 370 SNRYISDRFLPDKAIDLIDEAASLVKTQMDTVPEALDTLQRKELQMKIEEQALSKETDE- 428 Query: 554 DRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEK 613 L + + D +Q ++ R + ++++K + + E + Sbjct: 429 ---ASVKRLKELREDLAVTDA--AVKQMQERWQDRRAAFAEVQDLKKALKAAKDEMEQAE 483 Query: 614 TAILISILHEVH------IQIHQIESQEAMIE 639 ++ E+ I+ + EA+ + Sbjct: 484 ARYDLNRAAELKYNKIVNIEKELAQKTEALRK 515 >gi|296816671|ref|XP_002848672.1| myosin-9 [Arthroderma otae CBS 113480] gi|238839125|gb|EEQ28787.1| myosin-9 [Arthroderma otae CBS 113480] Length = 2637 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 40/269 (14%), Positives = 86/269 (31%), Gaps = 29/269 (10%) Query: 384 MLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEH 443 + +R L +K + + + I+ + Q Sbjct: 885 RIIQRNFHLYLNLKSSPWWRLFAAMKPLLGETRTAGEVKKRDERIQQLEAKAQQDIADRQ 944 Query: 444 SGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL---LLTLINHPAILQE 500 K A + + + +L K ++ K+ LRE L L I L++ Sbjct: 945 RIEEERRKIEAEMQRVRKTLESERSLALDKEEIFKRLQLREVELSEKLAGAIADQESLED 1004 Query: 501 QYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ERGFGELLKQLDRQVR 558 Q EL + +K+ L D + +I +RL ++ E + L++Q++ Sbjct: 1005 QLDELIAAK------KKIEHEL--DLRRDQLEQAAQIMERLEGEKKEMQERISDLEKQLK 1056 Query: 559 DAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE------ 612 + I + + AL L ++ +++E ++ + + E Sbjct: 1057 SVENAHNQYDDKIEALNREIN---ALNSHLSLKDKKLQDLEAKLLTSDQQLDLELASTTK 1113 Query: 613 -------KTAILISILHEVHIQIHQIESQ 634 + L+ E+ QI + S Sbjct: 1114 ELDASKKQINQLLEENREIQRQIADLSST 1142 >gi|315139026|ref|NP_079418.1| serine/threonine-protein kinase TAO1 isoform 2 [Homo sapiens] gi|332848197|ref|XP_003315601.1| PREDICTED: serine/threonine-protein kinase TAO1 [Pan troglodytes] gi|219519599|gb|AAI44068.1| TAOK1 protein [Homo sapiens] Length = 853 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + + K+ + + K+ + Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 503 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479 R ++ + +++ E KK +H + Q+ S + +K Sbjct: 504 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 563 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+E+ L + + + L + L + + + Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591 RL E +L ++ +T + + ++ Q L + + L Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670 Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R+ E+E+++ + + E+ L + E + + +++E IE Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728 Query: 640 GFGKMSGRL 648 F S RL Sbjct: 729 AFDSESMRL 737 >gi|169832773|ref|YP_001694535.1| ABC transporter ATPase [Streptococcus pneumoniae Hungary19A-6] gi|168995275|gb|ACA35887.1| ATPase component of ABC transporter with duplicated ATPase domains [Streptococcus pneumoniae Hungary19A-6] Length = 633 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 60/160 (37%), Gaps = 19/160 (11%) Query: 493 NHPAILQEQYQELADIRY-------DNNEL--QKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 NH I ++ E A I + ++ ++ + + + + + Sbjct: 472 NHLDIDSKEVLENALIDFDGTLLFVSHDRYFINRVATHVLELSENGSALYLGDYDYYIEK 531 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIA 603 + E+ Q++ + A+ + ++ ++ L ++ L + EE+E Q Sbjct: 532 KVEVEM-SQIEEASTNNQAKEASPVNDYQAQKESQKEVRKLMRQIESLETEIEELESQSQ 590 Query: 604 ----QVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 Q+ +A+K L + L ++ + +EAM+E Sbjct: 591 AISEQMLETNDADKLMELQAELDKISHR-----QEEAMLE 625 >gi|86151788|ref|ZP_01070002.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 260.94] gi|85841417|gb|EAQ58665.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 260.94] Length = 458 Score = 44.9 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 2/122 (1%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I +++ + Q ++ + + ++ + + Sbjct: 10 LERAILSSCIMSEEAYANIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E V++ L R EI +I Sbjct: 68 KKIDEQILAEILATPSMIDLPAYVNELREKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127 Query: 603 AQ 604 + Sbjct: 128 GK 129 >gi|315057979|gb|ADT72308.1| Replicative DNA helicase [Campylobacter jejuni subsp. jejuni S3] Length = 458 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I +++ + Q ++ + + ++ + + Sbjct: 10 LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E + V++ L R EI +I Sbjct: 68 KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127 Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627 +V ++ + ++ + E Q Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160 >gi|311893360|ref|NP_001185796.1| dynactin subunit 1 isoform 3 [Mus musculus] Length = 1239 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 46/358 (12%), Positives = 108/358 (30%), Gaps = 15/358 (4%) Query: 303 TEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSF 362 L +L + + + + DL L ++ + Sbjct: 201 RSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEM 260 Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 L E ++E E + +LEI D Sbjct: 261 ADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASS 320 Query: 423 YYSQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 Y + + ++ +L + + + + +Q L + +L ++ S Sbjct: 321 YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELS 380 Query: 482 LREAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIH 538 E+ + A L +E + L D + E +++L + + + + Sbjct: 381 QAESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQEN 440 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 R E E L +VR+A + + D +Q ++ L + ++R+ Sbjct: 441 ARETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQ 500 Query: 599 EKQIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 ++ + + E K A + + +++ Q+E +A ++ F S Sbjct: 501 QEASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRSEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 >gi|257386976|ref|YP_003176749.1| hypothetical protein Hmuk_0913 [Halomicrobium mukohataei DSM 12286] gi|257169283|gb|ACV47042.1| conserved hypothetical protein [Halomicrobium mukohataei DSM 12286] Length = 330 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 11/119 (9%) Query: 527 VEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYK 586 + + I R+ F E L ++ D Y A Sbjct: 106 NSRGDWDEGRITVRVPPENFSEARDDLAVLGHV-----EDESVSVQDFTDEYNDREA--- 157 Query: 587 RFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMS 645 R L +++ +E +++ ++E+ + + + L EV ++ + Q++ +E MS Sbjct: 158 RIEDLQQEERALESLLSRAN---DSEEASEIRNDLREVRDELRTLRQQQSSLERREAMS 213 >gi|242006231|ref|XP_002423957.1| myosin-9, putative [Pediculus humanus corporis] gi|212507227|gb|EEB11219.1| myosin-9, putative [Pediculus humanus corporis] Length = 1978 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 29/261 (11%), Positives = 75/261 (28%), Gaps = 22/261 (8%) Query: 383 DMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITE 442 D + + E + + L+ + K + + + + +L Sbjct: 1573 DRRIQEKEEEFENTRKNHQRALDSMQASLEAEAKGRAEALRMKKKLEADINELEIALDHA 1632 Query: 443 HSGYGRYWKKNARHRDQ-KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQ 501 + K R++ Q K L + + ++ + E A+ E Sbjct: 1633 NKANAEAQKNIKRYQQQLKDVQTALEEEQRARDDAREQLGIAER-------RANALQNEL 1685 Query: 502 YQELADIRYDNNELQKLWSFLFSDFVEQKYFLPE---------EIHQRLCE--RGFGELL 550 + + + ++ L + + ++ L ELL Sbjct: 1686 EESRTLLEQADRGRRQAEQELSDAHEQLNELSAQNASMSAAKRKLESELQTLHSDLDELL 1745 Query: 551 KQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTA--- 607 + A ++R A K + L +Q ++++ ++ + A Sbjct: 1746 NEAKNSEEKAKKAMVDAARLADELRAEQDHAQTQEKLRKALEQQIKDLQVRLDEAEANAL 1805 Query: 608 KGEAEKTAILISILHEVHIQI 628 KG + L + E+ ++ Sbjct: 1806 KGGKKAIQKLEQRVRELENEL 1826 Score = 42.2 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 69/222 (31%), Gaps = 15/222 (6%) Query: 428 IRDRLQQLFQKYITEHSGYGRYWKKNARHRDQK--GPSQRLMQSSLVKGKLSKKPSLREA 485 I +R Q + E + R +Q+ ++L + S +S E+ Sbjct: 1673 IAERRANALQNELEESRTLLEQADRGRRQAEQELSDAHEQLNELSAQNASMSAAKRKLES 1732 Query: 486 ALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERG 545 L + +L E + + +L L + E++ + L ++ Sbjct: 1733 ELQTLHSDLDELLNEAKNSEEKAKKAMVDAARLADEL--RAEQDHAQTQEKLRKALEQQ- 1789 Query: 546 FGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA--------LYKRFRLLSRQKEE 597 +L +LD +A + + + L K R R+ +E Sbjct: 1790 IKDLQVRLDEAEANALKGGKKAIQKLEQRVRELENELDGEQRRHADAQKNLRKTERRIKE 1849 Query: 598 I--EKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + + + + + + L + QI + E A+ Sbjct: 1850 LSFQAEEDRKNHERMQDLVDKLQQKIKTYKRQIEEAEEIAAL 1891 >gi|156555881|ref|XP_001603577.1| PREDICTED: similar to transcription initiation factor [Nasonia vitripennis] Length = 1000 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 512 NNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLD--RQVRDAGLWSATTEA 569 QK+ + S +E+ + + L+++L + R + Sbjct: 793 TPLQQKINKIVSSYGLEEPNQEVASLISHAAQERLKNLVEKLAIIAEHRIDLVKVDPRYE 852 Query: 570 NIVDVRQGYQ--QALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI- 626 DVR + + L +R R +++E + K A+ AK E + A L + E+ Sbjct: 853 VTQDVRAQLKFLEELDRVERKRHEEQEREVLLKA-AKSRAKTEDPEQAKLKAKAKEMQRA 911 Query: 627 QIHQIESQEA 636 ++ + +EA Sbjct: 912 EMEEARQREA 921 >gi|148687361|gb|EDL19308.1| cut-like 1 (Drosophila), isoform CRA_a [Mus musculus] Length = 672 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 31/285 (10%), Positives = 93/285 (32%), Gaps = 19/285 (6%) Query: 377 ESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH-IKDQKLRYYYSQAIRDRLQQL 435 + +P +D+ + E + + + + + N + K + +A+++++++ Sbjct: 94 DPVPALDVGQQLEIKVQRLHDIETENQKLRETLEEYNKEFAEVKNQEVTIKALKEKIREY 153 Query: 436 FQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHP 495 Q ++ ++ ++ + + KL + + Sbjct: 154 EQTLKSQAETIALEKEQKLQNDFAEKERKLQETQMSTTSKLEEAEHKLQTLQTALEKTRT 213 Query: 496 AILQEQYQELADIRYDNNELQKLWSFLFSDFVEQK-----YFLPEEIHQRLCERGFGELL 550 + + + + + ++ + + E + ++L L Sbjct: 214 ELFDLKTKYDEETTANFPRADEIEMIMTDLERANQRAEVAQREAETLREQLSSANHSLQL 273 Query: 551 KQLDRQV----------RDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSR-QKEEIE 599 ++ + A E I + + Q+ A + R S Q ++E Sbjct: 274 ASQIQKAPDVAIEVLTRSSLEVELAAKEREIAQLVEDVQRLQASLTKLRENSASQISQLE 333 Query: 600 KQIAQVTAKGEA-EKTAILISILHEVHIQIHQIESQE-AMIEGFG 642 +Q+ + + E+ + EV +++ ++S E A EG G Sbjct: 334 QQLNAKNSTLKQLEEKLKGQADYEEVKKELNTLKSMEFAPSEGAG 378 >gi|73980491|ref|XP_866265.1| PREDICTED: similar to dynactin 1 isoform 1 isoform 9 [Canis familiaris] Length = 1202 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.6 bits (85), Expect = 7.0, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|66044174|ref|YP_234015.1| chromosome segregation ATPase [Pseudomonas syringae pv. syringae B728a] gi|63254881|gb|AAY35977.1| similar to Chromosome segregation ATPases [Pseudomonas syringae pv. syringae B728a] Length = 646 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 35/255 (13%), Positives = 78/255 (30%), Gaps = 19/255 (7%) Query: 389 ETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY---SQAIRDRLQQLFQKYITEHSG 445 +PD + I D Y +++ R ++ + Sbjct: 198 LFSVLHGVSPDYAIVAQKAAAPEQLEIFDAVFGKEYGMSLESLSRRYDSQVAGWVEKSDA 257 Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQEL 505 ++ Q+G + +L + + + LRE L + L++ + L Sbjct: 258 TCAELREQLNQVQQRGQELEQIVRALEESGTATETELREQ--LNQVQQRGQELEQIVRAL 315 Query: 506 ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSA 565 + +L L + E+I + L E G +L Q+ Sbjct: 316 EESGAATET--ELRQQLNQVQQRGQEL--EQIARTLEESG-AATHAELRDQLSHVQEQGK 370 Query: 566 TTEANIVDVRQGYQQALALYKRFRLLSRQKEE-------IEKQIAQVTAKGEAEKTAILI 618 E+++ ++ + R L + E + ++ AQ+ + Sbjct: 371 HLESSVHALQN--NDEVEARIREVTLRAELAESRVHSFQLGQEAAQLRMNESEARLNEAF 428 Query: 619 SILHEVHIQIHQIES 633 S L E+ Q+ Q++ Sbjct: 429 SYLKELQAQVTQLQQ 443 >gi|238504128|ref|XP_002383296.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357] gi|83764631|dbj|BAE54775.1| unnamed protein product [Aspergillus oryzae] gi|220690767|gb|EED47116.1| DNA repair protein Rad50 [Aspergillus flavus NRRL3357] Length = 1326 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 44/295 (14%), Positives = 94/295 (31%), Gaps = 23/295 (7%) Query: 355 RGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINH 414 ED + ++ E E +R EL L++ Sbjct: 721 DDEDVKNLEEDLEAARSASTSYDTWSRFQQTEIPELEKEEEQYVLQRDELLNQLEDRDKI 780 Query: 415 IKDQKLRYYYSQAIRD------RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLM- 467 + ++ + +A+ R + ++ + R + + + Sbjct: 781 VSEKTEKKRDVEALAKTVNTIVRYDGEIKSIRSQIQDLSSKQQDTTSARTLEDIQEEIAA 840 Query: 468 ---QSSLVKGKLSKKPSLREAALLLTLINHPAI-LQEQYQELADIRYDNNELQKLWSFLF 523 +S +K LSK +E T IN+ + L++ L + ++ L + + Sbjct: 841 IGEKSRALKKSLSKLTHEKEQT--QTEINNLELQLRDVKSNLDNAKFQLERKSDLLARI- 897 Query: 524 SDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA 583 ++ E I + +R +L +L + S EA +++Q Q Sbjct: 898 EEYKNLNNQQREAIAKA--DRDIEDLTPELLKVQAKYDDISQRAEAREREMQQTISQMSE 955 Query: 584 LYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMI 638 Q E ++I +G + L + QI Q+E+++A I Sbjct: 956 SVH-------QLELANEEIDAYNERGGPTQLERSKRELENIEKQIGQLEAEQANI 1003 >gi|332679035|gb|AEE88164.1| ClpB protein [Francisella cf. novicida Fx1] Length = 859 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 2/132 (1%) Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSAT 566 I + ++ + S + + I ++ + + ++ + Sbjct: 390 AIDLVDEAASQIRMEIDSKPEKMESLYRRIIQLKMQREQLKKEKDEATKKRLEILEEEIK 449 Query: 567 TEANIVDVRQGYQQALALYKRFRL-LSRQKEEIEKQIAQVTAKGEAEKTAIL-ISILHEV 624 + + +A L + L + E+ + ++ + G+ K A L + E+ Sbjct: 450 GLESEYKGFEELWKAEKLKMQGTSKLKEELEKAKFELEKYQRAGDLSKMAELQYGKIPEL 509 Query: 625 HIQIHQIESQEA 636 QI QIE+ EA Sbjct: 510 EAQIKQIENTEA 521 >gi|317133296|ref|YP_004092610.1| ATP-dependent chaperone ClpB [Ethanoligenens harbinense YUAN-3] gi|315471275|gb|ADU27879.1| ATP-dependent chaperone ClpB [Ethanoligenens harbinense YUAN-3] Length = 872 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 22/185 (11%), Positives = 66/185 (35%), Gaps = 9/185 (4%) Query: 440 ITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQ 499 I + + R ++ + + +++ K ++ + + AL+ + Sbjct: 325 IEKDAALERRFQPIVVDQPSVEDTISILRGLKEKFEIHHGVRITDGALIACAELSDRYIS 384 Query: 500 EQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRD 559 +++ I + L + + S E + + + LK+ D Sbjct: 385 DRFLPDKAIDLMDEAAAMLRTEIDSMPTELDEISRRVMQLEIE----RQALKKEDDPASQ 440 Query: 560 AGLWSATTEANI-----VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKT 614 + L + E ++ ++ R + + +Q E+++++I + + + EK Sbjct: 441 SRLVTLEKELAALKEKGDRMKAQWEMEKKDIGREKEIKQQIEDVKREIEEAERRYDLEKL 500 Query: 615 AILIS 619 A+L + Sbjct: 501 AVLQN 505 >gi|218667154|ref|YP_002425328.1| hypothetical protein AFE_0840 [Acidithiobacillus ferrooxidans ATCC 23270] gi|218519367|gb|ACK79953.1| hypothetical protein AFE_0840 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 937 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 7/153 (4%) Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556 + Q+ + L ++ ELQK + F + E R E + ++ Sbjct: 374 LSQDFVERLCSSDHEGTELQKAIEDVV--FAKLDEIQKEGYSSFGELRKAREAASNIQKE 431 Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616 L + + + +++ Q + + + +Q EE++KQ+ T + + Sbjct: 432 ALRGELATLHKK--VDRLQEAIDQRGSKIRAKAEVEKQVEELKKQLPDATQSVDQKILEE 489 Query: 617 LISI---LHEVHIQIHQIESQEAMIEGFGKMSG 646 L L E+ QI + IEG + G Sbjct: 490 LEKQQILLRELEEQIANRSRRRRTIEGAIESYG 522 >gi|218289474|ref|ZP_03493702.1| hypothetical protein AaLAA1DRAFT_1288 [Alicyclobacillus acidocaldarius LAA1] gi|218240342|gb|EED07524.1| hypothetical protein AaLAA1DRAFT_1288 [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 33/151 (21%) Query: 34 AVKGDYWACCP--------FHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSF 85 + G + A CP FH + + K +YC C KG ++F + L G SF Sbjct: 19 SRPGQWKAHCPACGDQGRNFH------LYVSSVKDTFYCHKCGEKGGAVAFHAWLRGISF 72 Query: 86 IESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLD 145 E+ + A + P+ +K + A L + Sbjct: 73 -EAAK--AELY--------PQGARKRN--------LHPAERLTAAQLAELGFIPSKPWRT 113 Query: 146 ERGIDSHAIEMFKLGYAPDSRYSLREHLRQK 176 +G++ + +EH R K Sbjct: 114 PKGMNPLEWRRQRKAMLDWIWEEWQEHERFK 144 >gi|195473854|ref|XP_002089207.1| GE25472 [Drosophila yakuba] gi|194175308|gb|EDW88919.1| GE25472 [Drosophila yakuba] Length = 624 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 78/226 (34%), Gaps = 23/226 (10%) Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R + + + L++L + ++ D + Q L + K ++ + Sbjct: 180 RKKINDDLNEALKELDRLRKQFDETRKNLEQETLSRVDLENTIQSLREELSFKDQIHSQE 239 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 + T E L+ + +L++ L + + EQ ++I Sbjct: 240 INESRRIKQT------EYSEIDGRLSSE--YDAKLKQSLQELRAQYEEQMRINRDDIESL 291 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 ++ + R A S +T +I ++R + L + L + ++ Sbjct: 292 YEDK--------IRRLQEAAARTSNSTHKSIEELRSTRVRIDGLNAKINDLEQTNADLNA 343 Query: 601 QIAQVTAKGEAEKTAI------LISILHEVHIQI-HQIESQEAMIE 639 +I ++ + + ++ L L + ++ Q++ + +++ Sbjct: 344 RIRELERQLDNDRERHGQEIALLEKELIRLREEMTQQLQEYQDLMD 389 >gi|194756334|ref|XP_001960434.1| GF11513 [Drosophila ananassae] gi|190621732|gb|EDV37256.1| GF11513 [Drosophila ananassae] Length = 2013 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 43/242 (17%), Positives = 85/242 (35%), Gaps = 18/242 (7%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + R ++ I + + AR + + +S V S Sbjct: 1745 ETERDELAEEIAN-------NANKGSLMIDEKRRLEARIATLEEELEEEQSNSEVLLDRS 1797 Query: 478 KKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL-------FSDFVEQK 530 +K L+ L L N + Q+ A + N EL+ + + + Sbjct: 1798 RKAQLQIEQLTTELANEKSNSQKNENGRALLERQNKELKAKLAEIETAQRTKVKATIATL 1857 Query: 531 YFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVD--VRQGYQQALALYKRF 588 + ++L G LL+Q + D + T V Q +Q L R Sbjct: 1858 EAKIANLEEQLENEGKERLLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRI 1917 Query: 589 RLLSRQKEEIEKQIA-QVTAKGEAEKTAILISILHE-VHIQIHQIESQEAMIEGFGKMSG 646 +LL R +E E+++ + T K + ++ + E ++ +I+ ++++ G G S Sbjct: 1918 KLLKRNLDETEEELQKEKTQKRKYQRECEDMIESQEAMNREINSLKTKLRRTGGMGLSSS 1977 Query: 647 RL 648 RL Sbjct: 1978 RL 1979 >gi|149690347|ref|XP_001503149.1| PREDICTED: similar to KIAA0583 protein [Equus caballus] Length = 2019 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 33/331 (9%), Positives = 89/331 (26%), Gaps = 34/331 (10%) Query: 293 NVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVN-FV 351 + + + L K V + D L + +L + Sbjct: 401 YDTAMDKLEVVKKDYDALRKRYSEKVAIHNSDLSRLEQLEEENQRLLKQTEMLTQQRDTA 460 Query: 352 LLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNC 411 + + + S R +L + D+ W+ E Sbjct: 461 IQLQHQCALSLRRFEAIH--HELNKATAQNKDLQWEMELLQSELTELRTTQVKTAKESEK 518 Query: 412 INHIKDQKLRYYYSQAIRDRLQQLFQ--KYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469 +D Y + +R Q + + K TE K + + +++ Sbjct: 519 YKEERDAVY-SEYKLIMSERDQVISELDKLQTEVELAESKLKSSTSEKAAASEEMEVLRQ 577 Query: 470 SLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQ 529 + + +EA +L + + L L E Sbjct: 578 IKDTVTMDAGRANKEAEILR-----------------------KQCKALCQELKEALQEA 614 Query: 530 KYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 + + + +++ + D + + ++ + + K+ Sbjct: 615 ---DVAKCRRDWAFQERDKIVAERDSIRTLCDNLRRERDRAVSELAEALRSLDDTRKQKN 671 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISI 620 +SR+ +E+++Q+ + + + L++ Sbjct: 672 DVSRELKELKEQME--SQLEKEARFRQLMAH 700 >gi|114578203|ref|XP_001156090.1| PREDICTED: dynactin 1 isoform 5 [Pan troglodytes] Length = 1101 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 220 EDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 279 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 280 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 339 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 340 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 399 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 400 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 459 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 460 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 519 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 520 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 575 Score = 39.9 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 204 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRRLKEARKEA 263 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 264 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 323 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 324 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 377 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 378 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 421 Score = 37.6 bits (85), Expect = 7.1, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-------ALYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 196 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLEQVQEWKSKMQEQQADLQRR 255 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 256 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 310 >gi|62087516|dbj|BAD92205.1| CDC42 binding protein kinase alpha variant [Homo sapiens] Length = 1702 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 48/107 (44%), Gaps = 12/107 (11%) Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEAN---IVDVRQGYQQALALYKRFRLLSRQKE 596 L + E +++L +QV ++ E ++ ++Q A K+ + L +++E Sbjct: 497 DLEIKNLKEEIEKLRKQVTESSHLEQQLEEANAVRQELDDAFRQIKAYEKQIKTLQQERE 556 Query: 597 EIEKQIAQVTAKGEAEKTAI---------LISILHEVHIQIHQIESQ 634 ++ K++ Q + + + + + + E++ ++ ++ +Q Sbjct: 557 DLNKELVQASERLKNQSKELKDAHCQRKLAMQEFMEINERLTELHTQ 603 >gi|307105686|gb|EFN53934.1| hypothetical protein CHLNCDRAFT_58396 [Chlorella variabilis] Length = 1348 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 30/228 (13%), Positives = 72/228 (31%), Gaps = 13/228 (5%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 Q + + Q+ + + R + V K Sbjct: 993 KQTLDTQYQEALSHQPLDVDVGAGDGEAAQRLAQLGNQIAEAEVQADVAEDALKAAQAEL 1052 Query: 485 AALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ-RLCE 543 L L+ A+ Q+ ++LA R L + E + + + + Sbjct: 1053 ERLARKLLEARAVPQQVAEQLATCRDAITTLAAEKEGVAQALAEAREASAGVLQKMAVVA 1112 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QGY------QQALALYKRFRLLSRQK 595 E ++ +RDA + EA + + + ++A+ + R+ Sbjct: 1113 AKLAEAEGHFEQSLRDAEGVCSREEAAAMRAQLVAEWHKEGQSEEAIRGLLEQPAMERRV 1172 Query: 596 EEIEKQI--AQVTAKGEAEKTAILISILHE--VHIQIHQIESQEAMIE 639 ++E +I + A+ ++ + ++ L ++ E +EA+ E Sbjct: 1173 AQVEHKIVKREADAQSSYDQLEVELADLRNKLAKRRLRHAEGEEALRE 1220 >gi|304414040|ref|ZP_07395408.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] gi|304283254|gb|EFL91650.1| poly(A) polymerase I [Candidatus Regiella insecticola LSR1] Length = 471 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 35/310 (11%), Positives = 93/310 (30%), Gaps = 27/310 (8%) Query: 322 DGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS--FIRCYGKTAFEKLIVESL 379 D D + L + G R + G D R + + K ++ Sbjct: 87 DFDIATNATPEQVRKLFRNCRLIGRRFRLAHIMFGRDVIEVATFRGHHEQELSKNSDKNA 146 Query: 380 PLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYY------YSQAIRDRLQ 433 +N + ++ + + + D LR Y Q + + Sbjct: 147 SQQAQSGMLLRDNIFGSIEEDAQRRDFTINSLYYGSSDFVLRDYCGGLHDLKQGVIRLIG 206 Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTL-- 491 +Y + R + A+ P + P+ L L Sbjct: 207 DPEVRYREDPVRMLRAVRFAAKLDMTISPETAEPIKRMASLLSDIPPARLFEESLKLLQG 266 Query: 492 ---------INHPAILQEQYQELAD--IRYDNNELQKLWSFLF----SDFVEQKYFLPEE 536 + + Q + +++ + ++ ++++ + K P Sbjct: 267 GYGYKSYLKLCEYQLFQPLFPLISNHFTEHQDSPMERILVQVLKNTDDRLHNDKQVNPAF 326 Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 + + E ++L ++ A + + + DV + ++LA+ KR +++R+ Sbjct: 327 LFATMLWYPLIEHAQKLKQESGLAYHEAFS--LAMNDVLELENRSLAIPKRITIVTREIW 384 Query: 597 EIEKQIAQVT 606 ++ ++ + Sbjct: 385 SLQLRLPRRE 394 >gi|302757125|ref|XP_002961986.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii] gi|300170645|gb|EFJ37246.1| hypothetical protein SELMODRAFT_164801 [Selaginella moellendorffii] Length = 618 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 50/404 (12%), Positives = 111/404 (27%), Gaps = 52/404 (12%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN---------FFGALNY 257 + ++RG R + + + + K + F+ A Sbjct: 95 VIKWFATRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGA 154 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL------------TEY 305 +++ +++VEG MD LS+ +AG+ N VS A + Sbjct: 155 ARRTFYGLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDK 214 Query: 306 QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 + LW RI L D D PGL A + V + +D Sbjct: 215 KFSYLWDCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVVDGKQLKDA 274 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRE---------TENRSFNTPDERAELEIHLKN 410 + + G A +++ +S + + + + L Sbjct: 275 NEVLLTLGPEALREVVAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDE 334 Query: 411 CINHIKDQ--KLRYYYSQAIRDRLQQLFQKYITEHSGY----GRYWKKNARHRDQKGPSQ 464 + + + + + + L K R Sbjct: 335 YYTVVPGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHY 394 Query: 465 RLMQSSLVKGKLSKKPSLREAAL-LLTLINHPAILQEQYQELADIRYDNNELQK------ 517 R + + + E A L L NH +++ + ++L + + + Sbjct: 395 RKPFFEAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYG 454 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + E + + ++L ++ R + Sbjct: 455 IRGLVIDPYNE---LDHQRSSSQTETEYVSQILTKIKRFAQHHD 495 >gi|297272261|ref|XP_001111098.2| PREDICTED: serine/threonine-protein kinase TAO1-like isoform 2 [Macaca mulatta] Length = 853 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 36/309 (11%), Positives = 89/309 (28%), Gaps = 42/309 (13%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + + K+ + + K+ + Sbjct: 450 QMQEHEQDSELREQMSGYKRMRRQHQKQLMTLENKLKAEMDEHRLRLDKDL------ETQ 503 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARH-RDQKGPSQRLMQSSLVKGKLSKK 479 R ++ + +++ E KK +H + Q+ S + +K Sbjct: 504 RNNFAAEMEKLIKKHQAAMEKEAKVMSNEEKKFQQHIQAQQKKELNSFLESQKREYKLRK 563 Query: 480 PSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQ 539 L+E+ L + + + L + L + + + Sbjct: 564 EQLKESKELQIKKQFQDTCK----------IQTRQYKALRNHLLE---TTPKSEHKAVLK 610 Query: 540 RLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLL-------- 591 RL E +L ++ +T + + ++ Q L + + L Sbjct: 611 RLKEEQTRKLAILAEQYDHSINEMLSTQALRLDEAQEAECQVLKMQLQQELELLNAYQSK 670 Query: 592 ---------SRQKEEIEKQI---AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 R+ E+E+++ + + E+ L + E + + +++E IE Sbjct: 671 IKMQAEAQHDRELRELEQRVSLRRALLEQKIEEEMLALQNERTERIRSLLERQARE--IE 728 Query: 640 GFGKMSGRL 648 F S RL Sbjct: 729 AFDSESMRL 737 >gi|296268776|ref|YP_003651408.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833] gi|296091563|gb|ADG87515.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833] Length = 378 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 12/112 (10%) Query: 537 IHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKE 596 I L G + + +L+ Q LW+ +A V R L+R+ E Sbjct: 20 IQDVLDIDGLRKQIAELEEQAAAPDLWNDPEKA--QRVTSRLSHLQGEVNRIEELARRLE 77 Query: 597 EIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIE----------SQEAMI 638 ++ +G+ E A L ++ I +E +EA+I Sbjct: 78 DLPVLFELAAEEGDQEALAEAERELAKLKSDIGALEVRTLLSGEYDEREALI 129 >gi|269213980|ref|ZP_05983302.2| putative phage P4 alpha, zinc-binding [Neisseria cinerea ATCC 14685] gi|269144884|gb|EEZ71302.1| putative phage P4 alpha, zinc-binding [Neisseria cinerea ATCC 14685] Length = 367 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 16/101 (15%) Query: 42 CCPFHDEKTPSFHCNDSKGF--YYCFSCH-VKGDHLSFLSALLGCSFIESVQRLAAIAGV 98 CP K F D K + C C G L L G F E+ + +A + G+ Sbjct: 54 PCPNCGGKD-RFRFTDHKQGGGFICNGCAPDGGSGFDLLMLLYGYDFTEAYKAVAGVLGM 112 Query: 99 -----------PLPVVDPK-IEKKEKIQTDLIRLIEVATDF 127 P P ++ E + L L E + Sbjct: 113 GGGSTAPAVMKQPPAPLPDTAKEDEAKRQRLAALWESCERW 153 >gi|170087748|ref|XP_001875097.1| hypothetical protein LACBIDRAFT_305228 [Laccaria bicolor S238N-H82] gi|164650297|gb|EDR14538.1| hypothetical protein LACBIDRAFT_305228 [Laccaria bicolor S238N-H82] Length = 1682 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 74/216 (34%), Gaps = 21/216 (9%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT--- 490 ++ + + R RL++ + + + +E +LL Sbjct: 1351 DDVRQQLQRVKQENLELETELRENINAEQKARLLEKRVAENAETIAQLRQERSLLAADHK 1410 Query: 491 -LINHPAILQEQYQELADI---RYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC--ER 544 L H + + E +L + + +++ ++ ++ + E++ L Sbjct: 1411 DLQRHYSEISENANKLREEHATHFTSHDNRR-------HQLDIQLLEIEDLRHALEHQAN 1463 Query: 545 GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQ 604 ++ D+ + + D+++ + A A K + L +KE +E ++ + Sbjct: 1464 ELQRTEQEKDKIFSEKNDVAEMVALLENDLKRVRRDAEAFGKDLKTLRAEKERVEGRLKE 1523 Query: 605 VTAKGEAEKTA-----ILISILHEVHIQIHQIESQE 635 AKGE + L++ E + +E Sbjct: 1524 EVAKGERARKQGAAQVRLLNEQLEKQKEKAGRAKEE 1559 >gi|149728368|ref|XP_001498719.1| PREDICTED: TATA element modulatory factor 1 [Equus caballus] Length = 1095 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 91/275 (33%), Gaps = 16/275 (5%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + K E+L +E + + +E +L N IK + Sbjct: 524 DAAKKEIKNMKEELATRLNSSETADLLKEKDEQIQGLMEEGEKLSKQQLQNSNIIKKLRA 583 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 + ++ I +L + ++ E + G + Q KL+ Sbjct: 584 KDKENENIIAKLNKKVKELEEELQHLK---------QVLDGKEEVEKQHRENIKKLNSVV 634 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 +E L ++ + ++ A + EL L + + + + Sbjct: 635 ERQEKDLGRLQVDMDELEEKNRSIQAALDSAYKELTDLHKA---NAAKDSEAQEAALSRE 691 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL-ALYKRFRLLSRQKEEIE 599 + + EL L++ +A T + D+R Q+A A ++ L + E++ Sbjct: 692 MKAK--EELSAALEKAQEEARQQQETLAIQVGDLRLALQRAEQAAARKEDYLRHEISELQ 749 Query: 600 KQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 +++ + + E + + + + QI +++ Sbjct: 750 QRLQEAENR-NQELSQNVSTTTRPLLRQIENLQAT 783 >gi|6013196|gb|AAF01280.1|AF174433_1 heat shock protein 101 [Triticum aestivum] Length = 913 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 25/205 (12%), Positives = 74/205 (36%), Gaps = 6/205 (2%) Query: 434 QLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAAL-LLTLI 492 + ++KY+ + + + R +++ + +++ K + +++ AL + + Sbjct: 320 EEYRKYVEKDAAFERRFQQVFVAEPSVPDTVSILRGLKEKYEGHHGVRIQDRALVIAAQL 379 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 + I+ + I + + L S E + I + + + Sbjct: 380 SSRYIMGRHLPD-KAIDLVDEACANVRVQLDSQPEEIDNLERKRIQLEVELHALEKEKDK 438 Query: 553 LDRQVRDAGLWSATTEANI--VDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGE 610 + R + + ++ Y++ R L +++EE++ + + + + Sbjct: 439 -ASKARLVDVRKELDDLRDKLQPLQMKYRKEKERIDEIRSLKQRREELQFTLQEAERRMD 497 Query: 611 AEKTAIL-ISILHEVHIQIHQIESQ 634 + A L L EV I ++E + Sbjct: 498 LARVADLRYGALQEVDAAIAKLEGE 522 >gi|50510675|dbj|BAD32323.1| mKIAA0866 protein [Mus musculus] Length = 1984 Score = 44.9 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 22/287 (7%) Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 + + + A EK +++ + E E ++ ELE L +++++ Sbjct: 889 ELEQKHTQLAEEKTLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEED 948 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 R QA R ++ Q + +K + + ++ ++ Sbjct: 949 RGQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDDILVMDDQNSK 1008 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKL---WSFLFSDFV------EQKY 531 +E LL + + LA+ L KL + S+ E+ Sbjct: 1009 LSKERKLLE------ERVSDLTTNLAEEEEKAKNLTKLKSKHESMISELEVRLKKEEKSR 1062 Query: 532 FLPEEIHQRLCER--GFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 E++ ++L F E + L Q+ + + A E + + +A + Sbjct: 1063 QELEKLKRKLEGDASDFHEQIADLQAQIAELKMQLAKKEEELQAALARLDEEIA---QKN 1119 Query: 590 LLSRQKEEIEKQIAQVTAKGEAEKTAILISILH--EVHIQIHQIESQ 634 ++ E+E I+ + ++E+ A + ++ ++ ++++ Sbjct: 1120 NALKKIRELEGHISDLQEDLDSERAARNKAEKQKRDLGEELEALKTE 1166 >gi|321453322|gb|EFX64568.1| hypothetical protein DAPPUDRAFT_266172 [Daphnia pulex] Length = 1009 Score = 44.9 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 74/206 (35%), Gaps = 2/206 (0%) Query: 433 QQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLI 492 ++L ++ E + R + N ++ + + + + ++ E + + Sbjct: 5 RELTREEKDEKNRKAREKRSNEDPEAKEVRLAANRERAKIAREEKRRRLNPEEVQVAKNL 64 Query: 493 NHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQ 552 N +E+ E D R L + Q QR+ ++ + +Q Sbjct: 65 NAKKAREERQAEAPDERALRQRLDAERKRVARANETQVEHEARLHDQRIRQQLLRQ--EQ 122 Query: 553 LDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAE 612 + + R L A +A + + LA +R +L +++E + +A+ + + Sbjct: 123 AEEENRARLLAEAERQAVFRQEEENRARLLAEAERQAVLRQEEENRARLLAEAERQADLR 182 Query: 613 KTAILISILHEVHIQIHQIESQEAMI 638 + + + L + + QEA I Sbjct: 183 QDEQIRARLQAEAERQAALRQQEAAI 208 >gi|297622895|ref|YP_003704329.1| type 11 methyltransferase [Truepera radiovictrix DSM 17093] gi|297164075|gb|ADI13786.1| methyltransferase type 11 [Truepera radiovictrix DSM 17093] Length = 452 Score = 44.9 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 84/234 (35%), Gaps = 29/234 (12%) Query: 429 RDRLQQLF--QKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAA 486 + L +L + I E R + R + ++R + ++ +++ L E + Sbjct: 143 AELLAELESARAEIAEREAQVREAEAAGDTRVEAVLAERDTARAELEALRAREAQLVEQS 202 Query: 487 --LLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCER 544 L L+ + E +E+ + +E ++L L S E +E L E Sbjct: 203 ERLRTQLVASEEAITEAGEEITRL---TDEQRRLTQELQSTRNELAALPTQEELNALLEE 259 Query: 545 ------GFGELLKQLDRQVRDAGLWSATTEANIVDVR-------------QGYQQALALY 585 + QL+ + A L +A EA + + + A+ Sbjct: 260 RDTLLNELESVRAQLNERPTQAQLTAAREEAEALRAQLRDRPTPEIVAALEAQVAAIQSE 319 Query: 586 KRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + R E E ++A++ + A T + L+E +I +E+Q IE Sbjct: 320 RDARPTQATLEAAEARVAELEERLNARPTQ---AQLNEAQARIRALEAQIQAIE 370 >gi|257066046|ref|YP_003152302.1| replicative DNA helicase [Anaerococcus prevotii DSM 20548] gi|256797926|gb|ACV28581.1| replicative DNA helicase [Anaerococcus prevotii DSM 20548] Length = 443 Score = 44.9 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 16/169 (9%), Positives = 55/169 (32%), Gaps = 19/169 (11%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 + L E A++ +++ Q + + + ++ Q+++ + F + Sbjct: 6 RPLPNDFLAEQAIIGSILAKNETFDSVNQIIKPVDFYDSRTQRIYKSILKMFEKDIKVDE 65 Query: 535 EEIHQRLCER------GFGELLKQL-------------DRQVRDAGLWSATTEANIVDVR 575 + +L G E + ++ + V++ + + A+ + Sbjct: 66 ISLISQLKNENILQEVGGEEFITEITLSSFYTPNIDTYAKSVKEKSILRSLIGASEDIID 125 Query: 576 QGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEV 624 Y+ + + EI + +E + + +++E+ Sbjct: 126 LSYRHDDKIDSILSEAESKIFEISQDTHNKGLVRLSETMSETLQMINEL 174 >gi|145539197|ref|XP_001455293.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124423092|emb|CAK87896.1| unnamed protein product [Paramecium tetraurelia] Length = 665 Score = 44.9 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 38/284 (13%), Positives = 102/284 (35%), Gaps = 17/284 (5%) Query: 363 IRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRY 422 +R + + +L E L + ++++ + E + L + ++ I D + Sbjct: 308 LRSFSEDEVRRLRNEMSRLQEQN--NHLQSQNQSLMSEISRLNMTMEQSQYAISDANKQK 365 Query: 423 YYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSL 482 Y + +++++Q K+ R +++ + +RL + Sbjct: 366 YIFEEYKEKIRQFELKFQELQMQNERLRQQDHKVAVLTTEIERLNNLIKQLNTDADDWKQ 425 Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 + + L L+++ I + + +E+++L L EQK + ++I +R Sbjct: 426 KYQRIELALMDYRQIEKTNRDAVTKNELLLDEIERLKKIL-----EQKQYDMDQIIKR-- 478 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + E+ + Q L ++ + +Q ++ Q+ Sbjct: 479 NDLIQSQISTYQVNASASVSRIQEYESTQRETSTILQDNERLNRQLQQYQQQISTLQIQV 538 Query: 603 AQVTAKGEAE--------KTAILISILHEVHIQIHQIESQEAMI 638 + T K + + + ++ QIH+ E++ AM+ Sbjct: 539 QEQTTKNQQLITQQQQSYLINNNSAEIDKLKRQIHEYENKIAML 582 >gi|255321531|ref|ZP_05362689.1| replicative DNA helicase [Campylobacter showae RM3277] gi|255301387|gb|EET80646.1| replicative DNA helicase [Campylobacter showae RM3277] Length = 469 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 10/98 (10%), Positives = 31/98 (31%) Query: 484 EAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCE 543 E A+L ++I L E + L+ + ++ + E + +L Sbjct: 17 ERAILASIIYSADNLSEIFDILSPFDFYLRAHGDVYDAMVKCLNENLPVETGFLKTKLGN 76 Query: 544 RGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQA 581 + ++ ++ + E +++ + Sbjct: 77 KFDENVMNEIIGTNSILDVKKYANEIKEKSIKRSLVKI 114 >gi|57238239|ref|YP_178680.1| replicative DNA helicase [Campylobacter jejuni RM1221] gi|86149026|ref|ZP_01067258.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596970|ref|ZP_01100206.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 84-25] gi|218562214|ref|YP_002343993.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|57167043|gb|AAW35822.1| replicative DNA helicase [Campylobacter jejuni RM1221] gi|85840384|gb|EAQ57641.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190659|gb|EAQ94632.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359920|emb|CAL34708.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925824|gb|ADC28176.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni IA3902] gi|315929739|gb|EFV08911.1| replicative DNA helicase [Campylobacter jejuni subsp. jejuni 305] Length = 458 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 49/153 (32%), Gaps = 10/153 (6%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E A+L + I +++ + Q ++ + + ++ + + Sbjct: 10 LERAILSSCIMSEEAYASIAGDISPKDFSLKAHQDIFKAVIACSNNKEPISVSFLRKH-- 67 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 ++ ++L ++ L + E + V++ L R EI +I Sbjct: 68 KKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQLLSFAHLLPTRINEDRAVSEIADEI 127 Query: 603 --------AQVTAKGEAEKTAILISILHEVHIQ 627 +V ++ + ++ + E Q Sbjct: 128 GKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ 160 >gi|291405037|ref|XP_002719006.1| PREDICTED: myosin, heavy chain 1, skeletal muscle, adult [Oryctolagus cuniculus] Length = 1937 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 30/272 (11%), Positives = 82/272 (30%), Gaps = 15/272 (5%) Query: 371 FEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRD 430 + + + +D + E + +E I+ + + + Sbjct: 1564 IQLELNQVKSEIDRKIAEKDEEIDQLKRNHIRVVETMQSTLDAEIRSRNDALRVKKKMEG 1623 Query: 431 RLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLT 490 L ++ + + + +N R+ +L ++G+ K L Sbjct: 1624 DLNEM-EIQLNHANRLAAESLRNYRNTQGVLKETQLHLDDALRGQEDLKEQ------LAI 1676 Query: 491 LINHPAILQEQYQELADIRYDNNELQKLW-SFLFSDFVEQKYFLPEEIHQRLCERGFGEL 549 + +LQ + +EL +KL L + + ++ Sbjct: 1677 VERRANLLQAEIEELRATLEQTERARKLAEQELLDASERVQLLHTQNTSLINTKKKLEND 1736 Query: 550 LKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR----LLSRQKEEIEKQIAQV 605 + QL +V + S E K+ + L R K+ +E+ + + Sbjct: 1737 VSQLQSEVEEVIQESRNAEEKAKKAITDAAMMAEELKKEQDTSAHLERMKKNLEQTVKDL 1796 Query: 606 TAKGEAEKTAIL---ISILHEVHIQIHQIESQ 634 + + + L + ++ ++ ++E + Sbjct: 1797 QHRLDEAEQLALKGGKKQIQKLEARVRELEGE 1828 >gi|317133380|ref|YP_004092694.1| hypothetical protein Ethha_2469 [Ethanoligenens harbinense YUAN-3] gi|315471359|gb|ADU27963.1| hypothetical protein Ethha_2469 [Ethanoligenens harbinense YUAN-3] Length = 331 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 25/201 (12%), Positives = 57/201 (28%), Gaps = 19/201 (9%) Query: 3 YPRDFIKDLLIHIPISNLIGQY-VDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGF 61 + ++ ++ I + + + V+ + + HD SF N Sbjct: 4 FSKEIVQKAKN-ISLLEYLQRKGVEMVKDGRYYRMKE-------HD----SFVVNPETNL 51 Query: 62 YYCFSCHVKG-DHLSFLSALLGCSFIESVQRLAAIA-GVPLPVVDPKIEKKEKIQTDLIR 119 + S ++ G + + +L + +F+ +V L+ IA +PL Sbjct: 52 WIWNSRNISGKNAIDYLERIEKMTFVSAVSELSQIAPDMPLERSQAADTHPPPDDNKSFV 111 Query: 120 LIEVA--TDFFHHSLKNARD--KRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQ 175 L + A L R + + + G E + L H + Sbjct: 112 LPQAAPDNRRCFAYLHTHRGILPSVINHFIKAGALYEGAEYHDAVFVGFDDKGLPRHAHK 171 Query: 176 KGFSEEKIIEAGLLIDGDNSA 196 + + + Sbjct: 172 RSTNTYLPKTGTDGKRKHDRW 192 >gi|194386386|dbj|BAG59757.1| unnamed protein product [Homo sapiens] Length = 1236 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 46/356 (12%), Positives = 108/356 (30%), Gaps = 15/356 (4%) Query: 305 YQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIR 364 L +L + + + + DL L ++ + Sbjct: 203 EDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRRLKEARKEAKEALEAKERYMEEMAD 262 Query: 365 CYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYY 424 L E ++E E + +LEI D Y Sbjct: 263 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQ 322 Query: 425 SQAIRDRLQQLFQKYIT-EHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLR 483 + + ++ +L + + + + +Q L + +L ++ S Sbjct: 323 LKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEKKNQELEVVRQQRERLQEELSQA 382 Query: 484 EAALLLTLINHPAIL--QEQYQELADIRYDNNE-LQKLWSFLFSDFVEQKYFLPEEIHQR 540 E+ + A L +E + L D + E +++L + + + + R Sbjct: 383 ESTIDELKEQVDAALGAEEMVEMLTDRNLNLEEKVRELRETVGDLEAMNEMNDELQENAR 442 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 E E L +VR+A + + D +Q ++ L + ++R+ ++ Sbjct: 443 ETELELREQLDMAGARVREAQKRVEAAQETVADYQQTIKKYRQLTAHLQDVNRELTNQQE 502 Query: 601 QIAQVTAKGEAE------KTAILISILHEVHIQIHQIESQEA-----MIEGFGKMS 645 + + E K A + + +++ Q+E +A ++ F S Sbjct: 503 ASVERQQQPPPETFDFKIKFAETKAHAKAIEMELRQMEVAQANRHMSLLTAFMPDS 558 Score = 39.9 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 24/224 (10%), Positives = 67/224 (29%), Gaps = 15/224 (6%) Query: 425 SQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLRE 484 + + ++L+ L K + + K + + ++ + + K+ Sbjct: 187 VRDLEEKLETLRLKRAEDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRRLKEARKEA 246 Query: 485 AALLLTLINHPAILQEQYQELA----DIRYDNNELQKLWSFL--FSDFVEQKYFLPEEIH 538 L + + + + D + L + + V++ E + Sbjct: 247 KEALEAKERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELTTDLEILK 306 Query: 539 QRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEI 598 + E+G A + D + + K+ + ++ E Sbjct: 307 AEIEEKGSDGAASS------YQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQKLMEK 360 Query: 599 EKQ---IAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIE 639 + Q + + + E+ + S + E+ Q+ E M+E Sbjct: 361 KNQELEVVRQQRERLQEELSQAESTIDELKEQVDAALGAEEMVE 404 Score = 38.3 bits (87), Expect = 4.5, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 43/117 (36%), Gaps = 21/117 (17%) Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALA-------LYKRFRLLSRQ 594 E G ++ L+ ++ L A +A + ++ + Q + ++ L R+ Sbjct: 179 EEEGLRAQVRDLEEKLETLRLKRAEDKAKLKELEKHKIQLERVQEWKSKMQEQQADLQRR 238 Query: 595 KEEIEKQIAQVTAKGEAEKTAILIS------ILHEVHIQIHQIESQ------EAMIE 639 +E K+ + E+ ++ + + ++ + ++ EA+ E Sbjct: 239 LKEARKEAKEALEA--KERYMEEMADTADAIEMATLDKEMAEERAESLQQEVEALKE 293 >gi|118104637|ref|XP_424414.2| PREDICTED: similar to coiled-coil domain containing 100 [Gallus gallus] Length = 987 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 91/296 (30%), Gaps = 28/296 (9%) Query: 362 FIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKLR 421 E L ++ +++ + + + + L +D++ Sbjct: 636 CASEKQTEPRETLEYKAALELELWKEMQEDIFENQLKKKEMARMQALAEEWKK-RDEERE 694 Query: 422 YYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS 481 + + + Q T R + + + + L + + Sbjct: 695 ALVKKKVAEYTALEEQLQKTLRDLDKRERQLLTAESEIQRVKKELQAEHEQNKQELQDSV 754 Query: 482 LREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRL 541 R + E + I+ + ++ L+ E KY + E+ Q+ Sbjct: 755 RRTRE---------ECAHQVELERSKIKQLGEDRLRIQQQLYE--AENKYKILEKEFQQY 803 Query: 542 CERGFGELLKQLDRQVRDAGLWSATTEANIVDV-------RQGYQQALALYKRFRLLSRQ 594 E+ + QL ++ L A E + +Q + +AL R + ++ Sbjct: 804 KEQQSSKPEIQLQSEINLLTLEKAELERKLESATKSKLHYKQQWARALKELARLKQREQE 863 Query: 595 --KEEIEKQIAQVT-------AKGEAEKTAILISILHEVHIQIHQIESQEAMIEGF 641 ++KQ ++ A E E L ++ ++++++ QE + F Sbjct: 864 SAMARLKKQQQELEHMRLCYLAAEEKELGKTDRQELEDIRNELNRLKQQEEERKQF 919 >gi|72080971|ref|YP_288029.1| replicative DNA helicase [Mycoplasma hyopneumoniae 7448] gi|71914095|gb|AAZ54006.1| replicative DNA helicase [Mycoplasma hyopneumoniae 7448] Length = 463 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 EA ++ L+ +P + L + L ++ + + + K + Q L Sbjct: 11 LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70 Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 G + + L ++ + L + + D+++ + Sbjct: 71 RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129 Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 S + EI ++I + + E + I ++ + ++ + + +I+G Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181 >gi|300311394|ref|YP_003775486.1| replicative DNA helicase [Herbaspirillum seropedicae SmR1] gi|300074179|gb|ADJ63578.1| replicative DNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 478 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 19/201 (9%) Query: 463 SQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFL 522 + + ++ E ++L L+ A ++ + + + ++ + Sbjct: 15 QKESSDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSAEDFYRYDHRIIFEHI 74 Query: 523 FSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQAL 582 K +++ + G E + L +A + + ANI + + Sbjct: 75 VKLINSTKPADVITVYEAMSTSGKAEEVGGL--VYLNALAQNTPSAANIRRYAEIVRDRG 132 Query: 583 ALYK---------------RFRLLSRQKEEIEKQIAQVTAKGE--AEKTAILISILHEVH 625 L K + + + +E E +I + +G ++ + +L +V Sbjct: 133 ILRKLITVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQGFMEIQPLLTQVV 192 Query: 626 IQIHQIESQEAMIEGFGKMSG 646 +I ++ ++++ + G +G Sbjct: 193 ERIDELYNRDSSSDITGVPTG 213 >gi|229175259|ref|ZP_04302774.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3] gi|228608091|gb|EEK65398.1| hypothetical protein bcere0006_43390 [Bacillus cereus MM3] Length = 786 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 52/155 (33%), Gaps = 18/155 (11%) Query: 493 NHPAI--LQEQYQEL--ADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGE 548 ++P + +++ A + +D N L + L F + L +R + Sbjct: 449 HYPELKAYGYNREKVINASVEFDVNTLSPTYKLLIGVPGRSNAFEISKRLG-LSDRVINQ 507 Query: 549 LLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK 608 + A E + + + + +A AL K+ L R E+++QI + + Sbjct: 508 ARNHISTDTNKIENMIAKLEESQKNAERDWNEAEALRKQSEKLHR---ELQRQIIEFNDE 564 Query: 609 GE----------AEKTAILISILHEVHIQIHQIES 633 + EK + ++ Q+ Sbjct: 565 RDEKLLKAQKEGEEKVEAAKKEAEGIIRELRQLRK 599 >gi|197294762|ref|YP_001799303.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] gi|171854089|emb|CAM12066.1| Replicative DNA helicase, prophage [Candidatus Phytoplasma australiense] Length = 427 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 53/160 (33%), Gaps = 27/160 (16%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 E ALL TL+ +P + + + N + + ++ + ++ + + L Sbjct: 4 AERALLGTLLLNPEKMDAVINLVNTNNFSNPKNRCIFETMKRLKLQNREIDYVTVGSVLD 63 Query: 543 ERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQI 602 + + +D + + A + + Y + R L +++ ++ Sbjct: 64 NNLYK--IGGIDYLIELVEM------APASEYLETYIDLIKENALKRDLLGLIKQLPTEL 115 Query: 603 AQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFG 642 + K+ + + L V Q +EGF Sbjct: 116 S---------KSKNIHNYLQTVKNQ----------VEGFM 136 >gi|71893992|ref|YP_279438.1| replicative DNA helicase [Mycoplasma hyopneumoniae J] gi|71852119|gb|AAZ44727.1| replicative DNA helicase [Mycoplasma hyopneumoniae J] gi|312601586|gb|ADQ90841.1| Replicative DNA helicase [Mycoplasma hyopneumoniae 168] Length = 463 Score = 44.9 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 15/172 (8%) Query: 483 REAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLC 542 EA ++ L+ +P + L + L ++ + + + K + Q L Sbjct: 11 LEAFIISFLLANPEKVVNFIDILNPDDFSVRNLAEIVRAIKNVANQTKNPEVTLVLQELE 70 Query: 543 ERGFGELLK-------------QLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFR 589 G + + L ++ + L + + D+++ + Sbjct: 71 RTGKLDQIGGRNYIVNLYNSNFSLPSEITE-HLRIINEKKTLRDLKKIVDDSTKELNSGT 129 Query: 590 LLSRQK-EEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEG 640 S + EI ++I + + E + I ++ + ++ + + +I+G Sbjct: 130 KFSYEITTEILQKINLLNFNTKNETFIPIYEIAVQIFAYLTELRTSQNLIKG 181 >gi|302775366|ref|XP_002971100.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii] gi|300161082|gb|EFJ27698.1| hypothetical protein SELMODRAFT_171959 [Selaginella moellendorffii] Length = 618 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 51/404 (12%), Positives = 111/404 (27%), Gaps = 52/404 (12%) Query: 207 IFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKGKNLYN---------FFGALNY 257 + ++RG R + + + + K + F+ A Sbjct: 95 VIKWFATRGISQKVLQRNRVEQIYSGSELAIAFPYYKENKIIDCKYRTIPEKRFWKARGA 154 Query: 258 LQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTAL------------TEY 305 +++ +++VEG MD LS+ +AG+ N VS A + Sbjct: 155 ARRTFYGLEDIKGRDEVVIVEGEMDKLSMEEAGIINCVSVPDGAPVKAADGETPDPEEDK 214 Query: 306 QLRLLWKLSP------RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359 + LW RI L D D PGL A + V + +D Sbjct: 215 KFSYLWDCKEQFGKVTRIFLATDADGPGLALAEELARRFGRERCWRVNWPVVDGKQLKDA 274 Query: 360 DSFIRCYGKTAFEKLIVESLPLVDMLWKRE---------TENRSFNTPDERAELEIHLKN 410 + + G A ++I +S + + + + L Sbjct: 275 NEVLLTLGPEALREVIAKSELYPIRGLFQFSNFFKEIDDYYHMRVEEAEGASTGWKGLDE 334 Query: 411 CINHIKDQ--KLRYYYSQAIRDRLQQLFQKYITEHSGY----GRYWKKNARHRDQKGPSQ 464 + + + + + + L K R Sbjct: 335 YYTVVPGELTIVTGVPNSGKSEWIDALVCNLNRSKGWSFALCSMENKVTDHARKLIEKHY 394 Query: 465 RLMQSSLVKGKLSKKPSLREAAL-LLTLINHPAILQEQYQELADIRYDNNELQK------ 517 R + + + E A L L NH +++ + ++L + + + Sbjct: 395 RKPFFEAKYSNSTPRLTPEEFAAGLEWLDNHFYLIRCENEKLPSADWVLDRAKAAVQRYG 454 Query: 518 LWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAG 561 + + + E + + ++L ++ R + Sbjct: 455 IRGLVIDPYNE---LDHQRSSSQTETEYVSQILTKIKRFAQHHD 495 >gi|299141677|ref|ZP_07034813.1| toprim domain protein [Prevotella oris C735] gi|298577013|gb|EFI48883.1| toprim domain protein [Prevotella oris C735] Length = 341 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 49/355 (13%), Positives = 98/355 (27%), Gaps = 69/355 (19%) Query: 44 PFHDEKTPSFHCNDSKGFY-------YCFS----CHVKGDHLSFLSALLGC----SFIES 88 PF ++ PS H ++G Y F C G+ + + L +F E Sbjct: 34 PFREDSRPSCHLYANRGGYGNGQYYLQDFGDSSFC---GNCFAIVGRLCNINPKTNFREV 90 Query: 89 VQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERG 148 +Q + G+ + E++ + HH L + Y Sbjct: 91 LQVIDRDLGLGI-----FDEQRSE----------------HHVLMKRKATPSQKYKCSSI 129 Query: 149 IDSHAIEMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIF 208 + + + + L K I + Sbjct: 130 ASFEVVTQPFMPWEEEYWGQYGIGLSTLERYNVKSISS---------------------C 168 Query: 209 PIRSSRGQVIAFGGRTLSKGESVKYLNSPETILFHKG---KNLYNFFGALNYLQKSIRKD 265 + S G A G + + ++ + +Y Y+ ++ Sbjct: 169 TFKKSSGGNFAVYGSKAIPTYGYFFDDGCRLKIYRPKAKTRFMYAGHFPKPYI---FGRE 225 Query: 266 VRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLSPRIVLCFDGD 324 + + + G DV+SL G + + + E + L K RI+ +D D Sbjct: 226 QLPEEGALVFVTGGEKDVMSLSAHGFPALTFNSETANIPEDVMDELSKRFLRIIFLYDTD 285 Query: 325 DPGLRAAYKAIDLVLCHLIPGNRVNFVL-LSRGEDPDSFIR-CYGKTAFEKLIVE 377 + G R + I + +D F R + + +I + Sbjct: 286 ETGQRESALRIQQYGEKYNVQKLDLPLSGEKSEKDISDFFRLGHTAEELQAMIEK 340 >gi|282900031|ref|ZP_06307990.1| DnaB helicase [Cylindrospermopsis raciborskii CS-505] gi|281195063|gb|EFA70001.1| DnaB helicase [Cylindrospermopsis raciborskii CS-505] Length = 724 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 47/139 (33%), Gaps = 10/139 (7%) Query: 475 KLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLP 534 +L + E A+L ++ P + L + N ++++ + K Sbjct: 14 QLPPQNIEAEEAILGGILLDPEAMGRIRDRLLPQAFYVNAHREIYQAAIILNNQNKPTDL 73 Query: 535 EEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQ 594 + + L L ++ + + A L T + +DV + L RQ Sbjct: 74 LSLTEWLTNNDK---LSRIGGRNKLANLIDRTVSSVNIDVLADLVMD-------KYLRRQ 123 Query: 595 KEEIEKQIAQVTAKGEAEK 613 + +I ++ + + E Sbjct: 124 LIKAGNEIVKLGFEAQTEL 142 >gi|148688184|gb|EDL20131.1| coiled-coil domain containing 18, isoform CRA_b [Mus musculus] Length = 1450 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 25/253 (9%), Positives = 85/253 (33%), Gaps = 4/253 (1%) Query: 388 RETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYG 447 R+ + +E +++E + + +++ ++ + D+ + +K Sbjct: 863 RQAKLEMDQYKEELSKMEKEIIHLKRDGENKSMQLSQLDMVLDQTKTELEKTTNSVKELE 922 Query: 448 RYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELAD 507 R + + +++ L K +LR+ L ++ + E ++ Sbjct: 923 RLQHHTETELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLE--EKYTT 980 Query: 508 IRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATT 567 I+ EL++ + E + + + LD +R+ Sbjct: 981 IKDLTAELRECKMEIEDKKQELIEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQK 1040 Query: 568 EANIV-DVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHI 626 + + + + K+ L+ + + ++Q+ + + + + E+ Sbjct: 1041 IIKLEGTLEKSELELKECNKQVESLNEKLQNAKEQLREKEFIMLQNE-QEISQLKKEIER 1099 Query: 627 QIHQIESQEAMIE 639 +++ E++I+ Sbjct: 1100 TQQRMKEMESVIK 1112 >gi|327267205|ref|XP_003218393.1| PREDICTED: rootletin-like [Anolis carolinensis] Length = 1922 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 23/231 (9%), Positives = 74/231 (32%), Gaps = 17/231 (7%) Query: 418 QKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLS 477 + + + + + Q+L + ++ +++ + + + Sbjct: 1044 EAEKNLLLEKVSELQQELLASRSEVDRVKLEAQSRQEHDKNIVSSITSELRTFQSQFEDA 1103 Query: 478 KKPSLREAALL----LTLINHPAILQEQYQEL-ADIRYDNNELQKLWSFLFSDFVEQKYF 532 +E L L + ++ ++L A +R + L L + + Sbjct: 1104 MAAHQKEVKRLNEHVKELAREKEHVVKEAEQLKAQLRLAEDTHSGLRKELGEL--QHRLQ 1161 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 EEI ++ E+ + + + R+ + +++ + L+L + Sbjct: 1162 ETEEIRAH-QQKELQEIHRAVADESREKEALQKSNTDLRAAIKKAENERLSLQRTKEEKE 1220 Query: 593 RQKEEIEKQIA---------QVTAKGEAEKTAILISILHEVHIQIHQIESQ 634 ++ +E+ A + + + L E+ Q+ ++S+ Sbjct: 1221 QKIAVLEEAKAAIASEVGELRANLREVDKSRMEARRELQELRRQLKALDSE 1271 >gi|309360901|emb|CAP30592.2| CBR-MYO-5 protein [Caenorhabditis briggsae AF16] Length = 1979 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 81/285 (28%), Gaps = 9/285 (3%) Query: 353 LSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCI 412 + +DP K L ++ + ++ + + ++ Sbjct: 1139 MKDNQDPRLRRLEMKCNWSWKSWETDLMKLEEQLRHKSSSTRREAELAKLRQDLEDAAIN 1198 Query: 413 NHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLV 472 LR ++ A+ + QL +KN + R+ Q + Sbjct: 1199 AETSMAALRKKHNDAVAELSDQLDTVQKMR---GKLEREKNDKQREVDELQQSADVEAKQ 1255 Query: 473 KGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYF 532 + + EA L + + + ++E L L + Sbjct: 1256 RQNCERMAKQLEAQLTDITLKSDEQARLIQELTMSKNKIHSENHDLNRQLEDAESQLSAL 1315 Query: 533 LPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLS 592 + Q L Q R+ + + + +R+ ++ + Sbjct: 1316 NRIKQQQHNQMEELKRTLDQETRERQSLHSQVSNYQLECEQLRESLEEEQDA---KTDVQ 1372 Query: 593 RQKEEIEKQIAQVTAKGEAE---KTAILISILHEVHIQIHQIESQ 634 RQ + +I Q AK E E + L ++ ++ +++ Q Sbjct: 1373 RQLSKANSEIQQWRAKFEGEGVTRAEELEETRRKLTHKVQEMQEQ 1417 Score = 40.6 bits (93), Expect = 0.82, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 82/242 (33%), Gaps = 28/242 (11%) Query: 400 ERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQ 459 ++A+LE + N + + D++ + + +++Q + S KK + Sbjct: 926 QKADLEKQMANLNDQLCDEEEKNAALVKQKKKIEQDNEGLKKTVSDLETTIKKQESEKQS 985 Query: 460 KGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLW 519 K R +Q + +E + +E+ +KL Sbjct: 986 KDHQIRSLQDEIQSQDEVISKLNKEK--------------KHQEEV---------NRKLL 1022 Query: 520 SFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVR--QG 577 + E K + +L EL L+R+ R +++ Q Sbjct: 1023 EDI--QAEEDKVNHLNKTKAKLEST-LDELEDTLEREKRGRQDCEKQKRKVEGELKIAQE 1079 Query: 578 YQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAM 637 + L +K + +K++IE Q + E A L + E+ +I ++E + M Sbjct: 1080 LIEELNRHKHEQEQVLKKKDIELNSLQSRLEDEQSLVAKLQRQIKELLARIQELEEEPTM 1139 Query: 638 IE 639 + Sbjct: 1140 KD 1141 >gi|256000843|gb|ACU51762.1| RE63495p [Drosophila melanogaster] Length = 1094 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 38/249 (15%), Positives = 75/249 (30%), Gaps = 31/249 (12%) Query: 390 TENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRY 449 E ++T +E L + + D + + + + LFQ R Sbjct: 398 MEETHYSTNEELQATLQELADLQTQLTDTQTEN---ERLAEEKDALFQSLC-------RQ 447 Query: 450 WKKNARHRDQKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509 +K R Q Q L+ + S RE LL +++ +E + Sbjct: 448 TEKLNESRTQISTLQELLLRDTKQPAPEVSASEREQKLL-------DLIKTSQEEREAVL 500 Query: 510 YDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEA 569 EL + + +L + E + LD Q+ A EA Sbjct: 501 LKQEELGAELAEMKQAREAG----------QLELQRQRERIALLDSQLDAANAERRQGEA 550 Query: 570 NIVDVRQGYQQALALYKRFRLLSR----QKEEIEKQIAQVTAKGEAEKTAILISILHEVH 625 + Q R L + EE+E +++ +E + + Sbjct: 551 QFSQAMEEISQRAIEISRLSTLLENARSKIEELEADLSRGDKTDLSEVLDVARKEKDALE 610 Query: 626 IQIHQIESQ 634 ++ +++ Q Sbjct: 611 ERVAELQDQ 619 >gi|225444055|ref|XP_002264075.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 902 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 60/557 (10%), Positives = 162/557 (29%), Gaps = 38/557 (6%) Query: 109 KKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYS 168 + ++++ L L A + F K R + S L +++ Sbjct: 135 EHDRLRESLGNLKSSAREQFKKLQKEISGIRGSSPMRRINSSSEVGLCGILQEKASEKWT 194 Query: 169 LREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKG 228 + + + + S S + F VI R+L + Sbjct: 195 DVDKTIDTLMTTLDTVYEQVNNIVYLSKASVSEWLQDWEFQ-GEIEAMVIEHSIRSLREE 253 Query: 229 ESVKYLNSPETILFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQ 288 + N + F ++Y + D +L L Sbjct: 254 FEERLWN--QNAHFCGNGSVYWPEKTKEISRLRQELDAISK-----MLSTSEFGQLISHG 306 Query: 289 AGVQNVVSSLGTALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRV 348 + + + ++L ++G+ + + + + + Sbjct: 307 SCEIGEEWNNTKGTDHFHRKVLSNHVSPATSVWEGNGKHEESKTSMPENLESSSLLKHMS 366 Query: 349 NFVLLSRGEDPDSFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHL 408 L + + + +R ++ +++ + + L K + E + + Sbjct: 367 KEELFNHFKTEMTKMRRNHESQVQEMAEQYISLKGKFLKERGSSLPLRKDKEFDAMRKKI 426 Query: 409 KNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQ 468 I + D + A + + L + + D+K + L Sbjct: 427 PEVILKLDDILVENEKLPAFSNNAESLGSLKDRLDTLLSENHQLRDSLTDRKKEVRYLST 486 Query: 469 SSLVKGKLSKKPSLREAALLLTL------INHPAILQEQYQEL----------------A 506 V + + SL EA LL + I I +++ Sbjct: 487 QLSVAAEKMSQHSLAEAKLLKIIGNLKSAIEDAKIEASISEDVNKCILSEVTNQIKCDTE 546 Query: 507 DIRYDNNELQKLWSFLFSDFVEQKYFL-----PEEIHQRLCERGFGELL-KQLDRQVRDA 560 + ++ +Q+++ + + + + + + +G ++ +++ + Sbjct: 547 ESNMESTLMQQIYEVILREAAQNAETTSKYEIEDSDMEFIIMQGLSAIIYREVMKDAEAK 606 Query: 561 -GLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAK-GEAEKTAILI 618 + + + + + K RL +KE ++++I + A E E++A+ I Sbjct: 607 LNIMNVKYDCANEARVSIEIKVVEKEKALRLEFDEKERLKQEIILLEASLEEKERSALEI 666 Query: 619 SILHEVHIQIHQIESQE 635 + + ++ SQE Sbjct: 667 ADALVKEKEQFELASQE 683 >gi|217039390|gb|ACJ76854.1| DNA primase [Streptococcus agalactiae] Length = 105 Score = 44.9 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 2/102 (1%) Query: 403 ELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGP 462