RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus
Liberibacter asiaticus str. psy62]
(648 letters)
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding
protein, RNA polymerase, replication protein; HET: DNA;
1.60A {Escherichia coli} (A:1-145)
Length = 145
Score = 152 bits (386), Expect = 1e-37
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 4/149 (2%)
Query: 95 IAGVPLPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAI 154
+ G + L +L++ F+ SL+ YL++RG+ I
Sbjct: 1 MRGSHHH--HHHGSGSMHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVI 58
Query: 155 EMFKLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSR 214
F +G+AP ++ + + + +I+AG+L+ D SYDRFR R++FPIR R
Sbjct: 59 ARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQG-RSYDRFRERVMFPIRDKR 117
Query: 215 GQVIAFGGRTLSKGESVKYLNSPETILFH 243
G+VI FGGR L KYLNSPET +FH
Sbjct: 118 GRVIGFGGRVLGNDTP-KYLNSPETDIFH 145
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
replication, transferase; HET: DNA; 2.00A {Aquifex
aeolicus} (A:96-224)
Length = 129
Score = 134 bits (338), Expect = 4e-32
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 107 IEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSR 166
+EK K + + ++ DF+ SL R+ Y+ RGID F LGYAP S
Sbjct: 1 LEKISKDEK-VYVALDRVCDFYRESLLKNREAS--EYVKSRGIDPKVARKFDLGYAPSSE 57
Query: 167 YSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLS 226
+L + L++ E + LL D F R++ PI+ RG+VI FGGR +
Sbjct: 58 -ALVKVLKENDLLEAYLETKNLLSPTKGV--YRDLFLRRVVIPIKDPRGRVIGFGGRRIV 114
Query: 227 KGESVKYLNSPETIL 241
+ +S KY+NSP++ +
Sbjct: 115 EDKSPKYINSPDSRV 129
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding
protein, RNA polymerase, replication protein; HET: DNA;
1.60A {Escherichia coli} (A:146-285)
Length = 140
Score = 126 bits (318), Expect = 7e-30
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 10/148 (6%)
Query: 244 KGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALT 303
KG+ LY + A + R +++VEGYMDV++L Q G+ V+SLGT+ T
Sbjct: 1 KGRQLYGLYEAQQDNAEPNR----------LLVVEGYMDVVALAQYGINYAVASLGTSTT 50
Query: 304 EYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFI 363
++LL++ + ++ C+DGD G AA++A++ L ++ G ++ F+ L GEDPD+ +
Sbjct: 51 ADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV 110
Query: 364 RCYGKTAFEKLIVESLPLVDMLWKRETE 391
R GK AFE + +++PL L+
Sbjct: 111 RKEGKEAFEARMEQAMPLSAFLFNSLMP 138
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
replication, transferase; HET: DNA; 2.00A {Aquifex
aeolicus} (A:225-349)
Length = 125
Score = 117 bits (295), Expect = 3e-27
Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 13/137 (9%)
Query: 242 FHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTA 301
F KG+NL+ + A Y+++ ILVEGY D+L L G++NVV+ LGTA
Sbjct: 1 FKKGENLFGLYEAKEYIKEEGF----------AILVEGYFDLLRLFSEGIRNVVAPLGTA 50
Query: 302 LTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDS 361
LT+ Q LL K + ++ + +DGDD G +A AI L+L G V V L G DPD
Sbjct: 51 LTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSA---GVEVYPVYLPEGYDPDE 107
Query: 362 FIRCYGKTAFEKLIVES 378
FI+ +GK +LI S
Sbjct: 108 FIKEFGKEELRRLINSS 124
>1t6t_1 Putative protein; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG, unknown function; 1.80A {Aquifex
aeolicus VF5} (1:)
Length = 118
Score = 109 bits (275), Expect = 7e-25
Identities = 32/135 (23%), Positives = 49/135 (36%), Gaps = 23/135 (17%)
Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGTALTEY 305
K N K++++ S +ILVEG D +L + ++NV+ G +
Sbjct: 3 KEPRNLSEW--------IKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADV 54
Query: 306 QLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPDSFIRC 365
L K +++L FD D G R K +L L S+G D R
Sbjct: 55 VDXLEGKW-EKVILLFDLDTHGERINQKXKEL--------------LSSQGFLVDENFRN 99
Query: 366 YGKTAFEKLIVESLP 380
+ K I E
Sbjct: 100 FLKKWNIIHIEEING 114
>2fcj_A Small toprim domain protein; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MES; 1.30A {Geobacillus
stearothermophilus} (A:)
Length = 119
Score = 98.0 bits (244), Expect = 3e-21
Identities = 14/119 (11%), Positives = 33/119 (27%), Gaps = 19/119 (15%)
Query: 274 IILVEGYMDVLSLCQAGVQNVVSSL-GTALTEYQLRLLWKLS--PRIVLCFDGDDPGLRA 330
+I+VEG D + + VV +++ +L L + L D D+ G +
Sbjct: 7 VIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKL 66
Query: 331 AYKAIDLVLCHLIPGNRVNFVLLSRG---------EDPDSFIRCYGKTAFEKLIVESLP 380
+ + + + R + + ++
Sbjct: 67 R-RQFRRMFPE------AEHLYIDRAYREVAAAPIWHLAQVLLRARFDVRIESLMRGRG 118
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase;
HET: DNA; 3.45A {Enterobacteria phage T7} (A:75-203)
Length = 129
Score = 95.0 bits (236), Expect = 2e-20
Identities = 21/143 (14%), Positives = 48/143 (33%), Gaps = 26/143 (18%)
Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVS---SLGTAL 302
L+ N I++ EG +D+L++ + G +
Sbjct: 2 DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47
Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
+ ++ +I+L FD D+ G +A +A ++P +V +L +D
Sbjct: 48 AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKVRVAVLP-CKDA 101
Query: 360 DSFIRCYGKTAFEKLIVESLPLV 382
+ + + + P +
Sbjct: 102 NECHLNGHDREIMEQVWNAGPWI 124
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA
replication, DNA- directed RNA polymerase, primosome,
late protein; HET: DNA; 2.90A {Enterobacteria phage T7}
(A:138-255)
Length = 118
Score = 90.4 bits (224), Expect = 6e-19
Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 26/136 (19%)
Query: 246 KNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVV---SSLGTAL 302
L+ N I++ EG +D+L++ + G +
Sbjct: 2 DALFGKHLW--------------NGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASA 47
Query: 303 TEYQLRLLWKLSP---RIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDP 359
+ ++ +I+L FD D+ G +A +A ++P +V V + +D
Sbjct: 48 AKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQ-----VLPAGKV-RVAVLPCKDA 101
Query: 360 DSFIRCYGKTAFEKLI 375
+ + +
Sbjct: 102 NECHLNGHDREIMEQV 117
>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A
{Bacillus stearothermophilus} (A:23-69)
Length = 47
Score = 85.0 bits (211), Expect = 3e-17
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
IG+YV R+ N Y+ CPFH EKTPSF + K ++CF C G+
Sbjct: 1 IGEYVQLKRQGRN-----YFGLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGN 47
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA
replication, transferase; HET: DNA; 2.00A {Aquifex
aeolicus} (A:20-66)
Length = 47
Score = 83.9 bits (208), Expect = 5e-17
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 21 IGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGD 72
I +Y++ ++ +N Y CPFH + TPSF+ + SK + CF C V GD
Sbjct: 1 ISEYLNLEKVGSN-----YRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGD 47
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 36.7 bits (84), Expect = 0.008
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 530 KYFLPEEIHQRLCERGFGELLKQL------DRQVRDAGLWSATTEANIVDVRQGY 578
K F+ +E L ++G G+ ++ + Q+ L+SAT + + +
Sbjct: 261 KVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI---VLFSATFSERVEKYAERF 312
Score = 35.1 bits (80), Expect = 0.026
Identities = 16/149 (10%), Positives = 43/149 (28%), Gaps = 14/149 (9%)
Query: 100 LPVVDPKIEKKEKIQTDLIR-LIEVATDFFHHSLKNARDKRLHYYLDERGIDSHA-IEMF 157
L ++ K Q + E+A + + + +
Sbjct: 177 LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDA 236
Query: 158 KLGYAPDSRYSLREHLRQKGFSEEKIIEAGLLIDGDNSATSYDRFR---NRLIFPIRSSR 214
++ + + ++++ I +L + DN R+ + +
Sbjct: 237 QIVIGTPGT--VMDLMKRRQLDARDIKVF-VLDEADN-MLDQQGLGDQSMRIKHLLPRNT 292
Query: 215 GQVIAFGGRTLSKG-ESV--KYLNSPETI 240
Q++ F T S+ E ++ + I
Sbjct: 293 -QIVLFSA-TFSERVEKYAERFAPNANEI 319
>3hoa_A Thermostable carboxypeptidase 1; proline-rich loop,
hydrolase; 2.10A {Thermus thermophilus HB27} PDB: 1wgz_A
(A:1-100)
Length = 100
Score = 32.5 bits (74), Expect = 0.17
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546
+ YQ L + + + L L + D Q L +HQR+ +
Sbjct: 4 EAAYQNLLEFQRETAYLASLGALAAWDQRTMIPKKGHEHRARQMAALARLLHQRMTDPRI 63
Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
GE L++++ + N+ + RQ Y++A A+
Sbjct: 64 GEWLEKVEGSPLVQDP-LSDAAVNVREWRQAYERARAI 100
>1d0q_A DNA primase; zinc-binding motif, protein; HET: DNA; 1.71A
{Bacillus stearothermophilus} (A:1-22,A:70-103)
Length = 56
Score = 31.5 bits (71), Expect = 0.37
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 74 LSFLSALLGCSFIESVQRLAAIAGVPLPVVD 104
+FL + G F+E+ +RLAA AGV L V +
Sbjct: 24 FTFLMDIEGIPFVEAAKRLAAKAGVDLSVYE 54
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair,
10123K, structural genomics, protein structure
initiative; 2.35A {Lactobacillus reuteri 100-23}
(A:1-107)
Length = 107
Score = 29.7 bits (67), Expect = 1.2
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 21/81 (25%)
Query: 106 KIEKKEKIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDS 165
++ K ++ I I A A + L Y L Y +
Sbjct: 39 RLMKGTELDEKQIAAIATADQQ-----AKAYSRMLDY----------------LSYQMRT 77
Query: 166 RYSLREHLRQKGFSEEKIIEA 186
+ + L++ EE +
Sbjct: 78 ESDIVKKLKEIDTPEEFVEPI 98
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens}
(A:)
Length = 150
Score = 29.4 bits (65), Expect = 1.3
Identities = 13/72 (18%), Positives = 19/72 (26%)
Query: 410 NCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQS 469
+ + S L F K E +G +W N +R S
Sbjct: 77 FKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEATGKSSWWMLNPEGGKSGKAPRRRAAS 136
Query: 470 SLVKGKLSKKPS 481
KL + S
Sbjct: 137 MDSSSKLLRGRS 148
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor
domain, ADP, NECK linker, motor protein; HET: ADP; 3.25A
{Neurospora crassa} (A:)
Length = 443
Score = 29.1 bits (63), Expect = 1.7
Identities = 17/133 (12%), Positives = 30/133 (22%), Gaps = 7/133 (5%)
Query: 386 WKRETENRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSG 445
+R E + N L I + D K + +
Sbjct: 313 GQRLREGSNINKS------LTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVP 366
Query: 446 YGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKPS-LREAALLLTLINHPAILQEQYQE 504
Y G S+ M + + + S LR A + + Q
Sbjct: 367 YRDSVLTWLLKDSLGGNSKTAMIACISPTDYDETLSTLRYADQAKRIRTRAVVNQVDGVS 426
Query: 505 LADIRYDNNELQK 517
A+ +
Sbjct: 427 AAERDAQIPSIVH 439
>3hq2_A Bacillus subtilis M32 carboxypeptidase; hydrolase,
metal-binding, metalloprotease, protease, zinc; 2.90A
{Bacillus subtilis} (A:1-157)
Length = 157
Score = 29.0 bits (65), Expect = 1.9
Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 25/125 (20%)
Query: 499 QEQYQELADIRYDNNELQKLWSFLFSD------------FVEQKYFLPEEIHQRLCERGF 546
+E D+ + + + + D E L +I
Sbjct: 4 HTYEKEFFDLLKRISHYSEAVALMHWDSRTGAPKNGSEDRAESIGQLSTDIFNIQTSDRM 63
Query: 547 GELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVT 606
EL+ L + D S T+ + ++ Y++ + E K+ +
Sbjct: 64 KELIDVLYERFDDL---SEDTKKAVELAKKEYEENKKI----------PEAEYKEYVILC 110
Query: 607 AKGEA 611
+K E
Sbjct: 111 SKAET 115
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural
genomics, protein structure initiative; 2.04A
{Lactobacillus salivarius UCC118} (A:1-64)
Length = 64
Score = 28.8 bits (65), Expect = 2.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 159 LGYAPDSRYSLREHLRQKGFSEEKIIEA 186
L Y +R + + LR E+ I E
Sbjct: 28 LSYQLRTRKEVEDKLRSLDIHEDYISEI 55
>3dwc_A TCMCP-1, metallocarboxypeptidase; cowrin family of
metallocarboxypeptidases, hydrolase; 2.10A {Trypanosoma
cruzi} (A:1-97)
Length = 97
Score = 28.6 bits (64), Expect = 2.6
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
L +H + L+++ ++ V D AN+ ++R+ ++ L
Sbjct: 44 AAMAELQLHMHDTITAPKIRALIEEAEKSVGDL---EKLQRANLREMRRAWELENLL 97
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics,
joint center for structural genomics, JCSG; HET: FMN;
1.99A {Bacteroides fragilis nctc 9343} (A:)
Length = 248
Score = 28.0 bits (61), Expect = 3.6
Identities = 17/169 (10%), Positives = 40/169 (23%), Gaps = 29/169 (17%)
Query: 39 YWACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGC------SFIESVQRL 92
C + + N + L+ G + + Q +
Sbjct: 82 RRFCKYCQERNAVPGYGNLXSFLNAAXDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQXI 141
Query: 93 AAIAGVP--------LPVVDPKIEKKEKIQTDLIRLIEVATDFFHHSLKNAR------DK 138
+P + V P K+ + + +I + +H +
Sbjct: 142 IDALHLPELVFPITTVTVGYPAESPKQVDRLPIEGIIHE--ESYHDYTAEDINRLYAYKE 199
Query: 139 RLHYYLDERGID-------SHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180
L + + +L + LR++GF +
Sbjct: 200 SLPENKLFIEENQKETLPQVFTDVRYTKKDNEFXSENLLKVLRRQGFXD 248
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I
HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium}
(A:221-230,A:310-364)
Length = 65
Score = 28.1 bits (62), Expect = 3.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 251 FFGALNYLQKSIRKDVRRNSSSFIIL 276
F+ AL YLQK I++ + + S F+ L
Sbjct: 16 FYCALKYLQKDIKERXKSDDSPFLSL 41
>1muk_A Minor core protein lambda 3; single subunit polymerase fold,
fingers, PALM, thumb, right hand configuration, viral
protein; 2.50A {Reovirus SP}
(A:881-931,A:1026-1107,A:1196-1267)
Length = 205
Score = 27.7 bits (61), Expect = 4.6
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 254 ALNYLQKSIRKDVRRNSSSFIILVEGYMDV-LSLCQA 289
L + +++ + R + SSF L+E Y+ V +C+A
Sbjct: 56 ELAEMDETLMRARRHSYSSFSKLLEAYLLVKWRMCEA 92
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione
biosynthesis, beta-hairpin, redox regulation; HET: GLU;
2.09A {Brassica juncea} PDB: 2gwc_A* (A:1-422)
Length = 422
Score = 27.1 bits (59), Expect = 6.9
Identities = 15/117 (12%), Positives = 32/117 (27%), Gaps = 5/117 (4%)
Query: 41 ACCPFHDEKTPSFHCNDSKGFYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIA---- 96
A PF + K F S + F + +++ +
Sbjct: 211 ANSPFTEGKPNGFLSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFAYRN 270
Query: 97 GVPLPVVDPKIEKKEKIQTDLIRLIEVATD-FFHHSLKNARDKRLHYYLDERGIDSH 152
G + + + + + + +H + RL Y++ RG D
Sbjct: 271 GKYVDCTGMTFRQFLAGKLPCLPGELPTYNDWENHLTTIFPEVRLKRYMEMRGADGG 327
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family,
metallopeptidase; 2.20A {Pyrococcus furiosus} (A:1-100)
Length = 100
Score = 27.1 bits (60), Expect = 7.4
Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 528 EQKYFLPEEIHQRLCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALAL 584
+ L H+ L F L+++ L + + + + + A A
Sbjct: 48 VAQGELSVLSHELLLHPEFVNLVEKAKGL---ENL-NEYERGIVRVLDRSIRIARAF 100
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous
activities, enzyme evolution, hyperthermophilic,
lactonase, hydrolase; HET: KCX GOL HT5; 2.05A
{Sulfolobus solfataricus} PDB: 2vc5_A* (A:)
Length = 314
Score = 26.6 bits (57), Expect = 8.6
Identities = 14/111 (12%), Positives = 26/111 (23%)
Query: 399 DERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRD 458
E K I H+ D Y + +Y + +
Sbjct: 184 ILTEEGVDPGKILIGHLGDTDNIDYIKKIADKGSFIGLDRYGLDLFLPVDKRNETTLRLI 243
Query: 459 QKGPSQRLMQSSLVKGKLSKKPSLREAALLLTLINHPAILQEQYQELADIR 509
+ G S ++M S + + E L ++ E
Sbjct: 244 KDGYSDKIMISHDYCCTIDWGTAKPEYKPKLAPRWSITLIFEDTIPFLKRN 294
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil,
actin capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
(A:140-323)
Length = 184
Score = 26.7 bits (58), Expect = 9.4
Identities = 14/143 (9%), Positives = 38/143 (26%), Gaps = 17/143 (11%)
Query: 497 ILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQRLCERGFGELLKQLDRQ 556
+ DI+ NE+ + W L ++ L + + +L+
Sbjct: 40 QAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLW---- 95
Query: 557 VRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEKQIAQVTAKGEAEKTAI 616
+ + + + L + + + + G+
Sbjct: 96 -----MEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGK------ 144
Query: 617 LISILHEVHIQIHQIESQEAMIE 639
S+L H +I+ + +
Sbjct: 145 --SLLARKHYASEEIKEKLLQLT 165
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.322 0.139 0.413
Gapped
Lambda K H
0.267 0.0492 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 5,031,314
Number of extensions: 236517
Number of successful extensions: 951
Number of sequences better than 10.0: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 46
Length of query: 648
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 554
Effective length of database: 1,778,379
Effective search space: 985221966
Effective search space used: 985221966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)