BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] (648 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 1340 bits (3468), Expect = 0.0, Method: Compositional matrix adjust. Identities = 648/648 (100%), Positives = 648/648 (100%) Query: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG Sbjct: 1 MNYPRDFIKDLLIHIPISNLIGQYVDWDRRKTNAVKGDYWACCPFHDEKTPSFHCNDSKG 60 Query: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL Sbjct: 61 FYYCFSCHVKGDHLSFLSALLGCSFIESVQRLAAIAGVPLPVVDPKIEKKEKIQTDLIRL 120 Query: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE Sbjct: 121 IEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKLGYAPDSRYSLREHLRQKGFSE 180 Query: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI Sbjct: 181 EKIIEAGLLIDGDNSATSYDRFRNRLIFPIRSSRGQVIAFGGRTLSKGESVKYLNSPETI 240 Query: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT Sbjct: 241 LFHKGKNLYNFFGALNYLQKSIRKDVRRNSSSFIILVEGYMDVLSLCQAGVQNVVSSLGT 300 Query: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD Sbjct: 301 ALTEYQLRLLWKLSPRIVLCFDGDDPGLRAAYKAIDLVLCHLIPGNRVNFVLLSRGEDPD 360 Query: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL Sbjct: 361 SFIRCYGKTAFEKLIVESLPLVDMLWKRETENRSFNTPDERAELEIHLKNCINHIKDQKL 420 Query: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP Sbjct: 421 RYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKGPSQRLMQSSLVKGKLSKKP 480 Query: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR Sbjct: 481 SLREAALLLTLINHPAILQEQYQELADIRYDNNELQKLWSFLFSDFVEQKYFLPEEIHQR 540 Query: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK Sbjct: 541 LCERGFGELLKQLDRQVRDAGLWSATTEANIVDVRQGYQQALALYKRFRLLSRQKEEIEK 600 Query: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL Sbjct: 601 QIAQVTAKGEAEKTAILISILHEVHIQIHQIESQEAMIEGFGKMSGRL 648 >gi|254781007|ref|YP_003065420.1| hypothetical protein CLIBASIA_04540 [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 141 HYYLDERGIDSHAIEMFKLGYAP--DSRYSLRE 171 HY AI +F +G++P D+RY+LR+ Sbjct: 333 HYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQ 365 >gi|254780929|ref|YP_003065342.1| hypothetical protein CLIBASIA_04140 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 141 HYYLDERGIDSHAIEMFKLGYAP--DSRYSLRE 171 HY AI +F +G++P D+RY+LR+ Sbjct: 333 HYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQ 365 >gi|254780914|ref|YP_003065327.1| hypothetical protein CLIBASIA_04065 [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 26.6 bits (57), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%) Query: 141 HYYLDERGIDSHAIEMFKLGYAP--DSRYSLRE 171 HY AI +F +G++P D+RY+LR+ Sbjct: 333 HYMHKRHRTGRDAITIFSVGFSPDQDTRYTLRQ 365 >gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus str. psy62] Length = 398 Score = 26.2 bits (56), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Query: 408 LKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWKKNARHRDQKG 461 L C + + D+ ++ ++ +D+ +F+K I +H G Y ++NA QK Sbjct: 38 LSGCASIVSDRTIKDPTTK--KDQTSTIFKKQIKKHLKQGSYIRENAGDIAQKA 89 >gi|254780364|ref|YP_003064777.1| ferredoxin-NADP+ reductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 25.4 bits (54), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 19/120 (15%) Query: 336 DLVLCHLIPGNRVNFVLLSRGEDP-DSFIR---CYGKTAFEKLIVESLPLVDMLWKRETE 391 DL+L LIPGNR+ + G P S IR Y K F+++I+ + Sbjct: 106 DLILDSLIPGNRLYLFSMGTGIAPFASMIRDPETYKK--FDEVII-----THTCGRVAEL 158 Query: 392 NRSFNTPDERAELEIHLKNCINHIKDQKLRYYYSQAIRDRLQQLFQKYITEHSGYGRYWK 451 + E ++ EI LK+ I QKL++Y + D L++ IT H G +++ Sbjct: 159 QYGIDVMHEISQDEI-LKDLIG----QKLKFYRTVTQED---YLYKGRITNHILSGEFYR 210 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 24.6 bits (52), Expect = 5.7, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 7 FIKDLLIHIPISNLIGQYVDWDR 29 F K LL H+P+ NLI + +D R Sbjct: 362 FAKQLLQHVPLVNLIRRVLDERR 384 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.413 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 425,430 Number of Sequences: 1233 Number of extensions: 18351 Number of successful extensions: 37 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 8 length of query: 648 length of database: 328,796 effective HSP length: 80 effective length of query: 568 effective length of database: 230,156 effective search space: 130728608 effective search space used: 130728608 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)