HHsearch alignment for GI: 254780836 and conserved domain: COG0144

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=92.02  E-value=0.96  Score=24.34  Aligned_cols=169  Identities=15%  Similarity=0.169  Sum_probs=92.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
T Consensus       137 ~~~vQd~sS~l~a~~L---------~p~pge~VlD~cAAPGGKTthla~~~~----~~----~~iV~A~D~~~~Rl~~l~  199 (355)
T COG0144         137 LIYVQDEASQLPALVL---------DPKPGERVLDLCAAPGGKTTHLAELME----NE----GAIVVAVDVSPKRLKRLR  199 (355)
T ss_pred             EEEEECHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHCC----CC----CCEEEEECCCHHHHHHHH
T ss_conf             8999677876679971---------999979688807999769999999668----99----876997449878999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCC
Q ss_conf             9989808875334566668234754--57999866418999816856765--3100011123442266665357---777
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLP  329 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP  329 (674)
T Consensus       200 ~nl~RlG~~n-------v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~-----------Pd~~~~~~~~~i~  261 (355)
T COG0144         200 ENLKRLGVRN-------VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRD-----------PDVKWRRTPEDIA  261 (355)
T ss_pred             HHHHHHCCCC-------EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCC-----------CCHHCCCCHHHHH
T ss_conf             9999719983-------489951330143113455777859987999877113358-----------1232038999999


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf             477065999999999614665788079997389713477644326899999988494688
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA  389 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~iea  389 (674)
T Consensus       262 ~l~~lQ~~iL~~a~~~lk~----GG~LVYS--TCS~~~---eENE~vV~~~L~~~~~~~~  312 (355)
T COG0144         262 ELAKLQKEILAAALKLLKP----GGVLVYS--TCSLTP---EENEEVVERFLERHPDFEL  312 (355)
T ss_pred             HHHHHHHHHHHHHHHHCCC----CCEEEEE--ECCCCH---HCCHHHHHHHHHHCCCCEE
T ss_conf             9999999999999984487----9889999--023750---0288999999985899544