HHsearch alignment for GI: 254780836 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=92.02 E-value=0.96 Score=24.34 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
T Consensus 137 ~~~vQd~sS~l~a~~L---------~p~pge~VlD~cAAPGGKTthla~~~~----~~----~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 137 LIYVQDEASQLPALVL---------DPKPGERVLDLCAAPGGKTTHLAELME----NE----GAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred EEEEECHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHCC----CC----CCEEEEECCCHHHHHHHH
T ss_conf 8999677876679971---------999979688807999769999999668----99----876997449878999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCC
Q ss_conf 9989808875334566668234754--57999866418999816856765--3100011123442266665357---777
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLP 329 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP 329 (674)
T Consensus 200 ~nl~RlG~~n-------v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~-----------Pd~~~~~~~~~i~ 261 (355)
T COG0144 200 ENLKRLGVRN-------VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRD-----------PDVKWRRTPEDIA 261 (355)
T ss_pred HHHHHHCCCC-------EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCC-----------CCHHCCCCHHHHH
T ss_conf 9999719983-------489951330143113455777859987999877113358-----------1232038999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 477065999999999614665788079997389713477644326899999988494688
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~iea 389 (674)
T Consensus 262 ~l~~lQ~~iL~~a~~~lk~----GG~LVYS--TCS~~~---eENE~vV~~~L~~~~~~~~ 312 (355)
T COG0144 262 ELAKLQKEILAAALKLLKP----GGVLVYS--TCSLTP---EENEEVVERFLERHPDFEL 312 (355)
T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEEEE--ECCCCH---HCCHHHHHHHHHHCCCCEE
T ss_conf 9999999999999984487----9889999--023750---0288999999985899544