HHsearch alignment for GI: 254780836 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.37 E-value=4.9e-11 Score=91.48 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
T Consensus 181 ~~P~lAR~mVNLa----------~v~~G~~vlDPFcGTGgiLiEagl--------~----G~~viG~Did~~mv~gak~N 238 (347)
T COG1041 181 MDPRLARAMVNLA----------RVKRGELVLDPFCGTGGILIEAGL--------M----GARVIGSDIDERMVRGAKIN 238 (347)
T ss_pred CCHHHHHHHHHHH----------CCCCCCEEECCCCCCCHHHHHHHH--------C----CCEEEECCHHHHHHHHHHHH
T ss_conf 5989999987774----------164698764576783488883664--------2----75676032379998556641
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89808875334566668234754579998664189998168567653100011123442266665357777477065999
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF 338 (674)
T Consensus 239 l~~y~i~~~~------~~~~~Da~~lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly-------------------~~~ 292 (347)
T COG1041 239 LEYYGIEDYP------VLKVLDATNLP-LRDNSVDAIATDPPYGRSTKIKGEGLDELY-------------------EEA 292 (347)
T ss_pred HHHHCCCCEE------EEEECCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCHHHHH-------------------HHH
T ss_conf 5662767616------88730221277-887742358846998710024555289999-------------------999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 999999614665788079997389713477644326899999988494-68883176776557886169999946
Q gi|254780836|r 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWILSN 412 (674)
Q Consensus 339 lqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil~k 412 (674)
T Consensus 293 le~~~evLk----~gG~~vf~~p~-------------~~~~~~~~~~f~v~~~~~----~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 293 LESASEVLK----PGGRIVFAAPR-------------DPRHELEELGFKVLGRFT----MRVHGSLTRVIYVVRK 346 (347)
T ss_pred HHHHHHHHH----CCCEEEEECCC-------------CCHHHHHHCCCEEEEEEE----EEECCCEEEEEEEEEC
T ss_conf 999998730----48489996178-------------605567643965999997----7641746899999862