HHsearch alignment for GI: 254780836 and conserved domain: COG2265
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].
Probab=95.33 E-value=0.031 Score=34.07 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCC-----CCCCCCCCCHHHHHHH----H-HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCC
Q ss_conf 289999874024-----5673337611443899----9-999999862276657536-8179999999973178401101
Q gi|254780836|r 132 LLYKICKNFSGI-----ELHPDTVPDRVMSNIY----E-HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFK 200 (674)
Q Consensus 132 ~L~~vI~~F~~i-----dL~p~~v~n~~mG~iy----E-~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~ 200 (674)
T Consensus 217 ~~~~~~~~~~~~~~i~~~i~~~~-~~~i~g~~~~~~~~~~~i~e~~~~~-~~~~sF~Q~N~~~~ekl~~~a~----~~~~ 290 (432)
T COG2265 217 ALRELLEAFPEIKGIVQNINRAK-TNVIEGDEEITLYGLESIREGVSFQ-ISPRSFFQVNPAVAEKLYETAL----EWLE 290 (432)
T ss_pred HHHHHHHHCCCCEEEEEEECCCC-CCEEECCCCEEEECCCCCCCCEEEE-ECCCCCEEECHHHHHHHHHHHH----HHHH
T ss_conf 99999984111304789951788-7458657423660553442563887-5799741339999999999999----9974
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 38776403117665404689999999998531005333225504666678899999998980887533456666823475
Q gi|254780836|r 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 (674)
Q Consensus 201 ~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd 280 (674)
T Consensus 291 --~~~~~~vlDlYCGvG~f~l~lA~~------------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~-------~f~~~~ 349 (432)
T COG2265 291 --LAGGERVLDLYCGVGTFGLPLAKR------------VKKVHGVEISPEAVEAAQENAAANGIDNV-------EFIAGD 349 (432)
T ss_pred --CCCCCEEEECCCCCCHHHHHHCCC------------CCEEEEEECCHHHHHHHHHHHHHCCCCCE-------EEEECC
T ss_conf --369977999355887013553124------------65799996489999999999997398877-------999586
Q ss_pred CCCC--CCCCCCEEEEEEECCCC
Q ss_conf 4579--99866418999816856
Q gi|254780836|r 281 TLSK--DLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 281 TL~~--d~~~~~kFD~vlaNPPF 301 (674)
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred HHHHHHHHCCCCCCCEEEECCCC
T ss_conf 88886510025799989989999