HHsearch alignment for GI: 254780836 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=98.06 E-value=7.1e-05 Score=51.27 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
T Consensus 161 ~vlDlGCG~Gvlg~~l----a~~~p~------~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-------~v~~s~~~~~v-~ 222 (300)
T COG2813 161 KVLDLGCGYGVLGLVL----AKKSPQ------AKLTLVDVNARAVESARKNLAANGVENT-------EVWASNLYEPV-E 222 (300)
T ss_pred CEEEECCCCCHHHHHH----HHHCCC------CEEEEEECCHHHHHHHHHHHHHCCCCCC-------EEEEECCCCCC-C
T ss_conf 6887078842999999----986898------7289982669999998876997398763-------79981244665-4
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 6641899981685676531000111234422666653577774770659999999996146657880799973897
Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 (674)
Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs 363 (674)
T Consensus 223 -~-kfd~IisNPPfh~G-----~~v~~------------------~~~~~ii~~A~~~L~----~gGeL~iVan~~ 269 (300)
T COG2813 223 -G-KFDLIISNPPFHAG-----KAVVH------------------SLAQEIIAAAARHLK----PGGELWIVANRH 269 (300)
T ss_pred -C-CCCEEEECCCCCCC-----CCHHH------------------HHHHHHHHHHHHHHC----CCCEEEEEECCC
T ss_conf -4-00689848884677-----10167------------------889999999997604----597799997588