HHsearch alignment for GI: 254780836 and conserved domain: COG4889

>COG4889 Predicted helicase [General function prediction only].
Probab=99.27  E-value=5.9e-10  Score=84.45  Aligned_cols=262  Identities=16%  Similarity=0.203  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCC-----CCCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             43899999999986227665753681799999999731784011013-----8776403117665404689999999998
Q gi|254780836|r  155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-----SPGMIRTLYDPTCGTGGFLTDAMNHVAD  229 (674)
Q Consensus       155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~-----~p~~~~tIyDPaCGTGGmL~~a~~~i~~  229 (674)
T Consensus       794 Ik~LY~~FFk~aFKkqsE~LGIVyTPiEVVDFIlra~----d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs  869 (1518)
T COG4889         794 IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRAT----DDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALIS  869 (1518)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHC----CHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf             9999999999999876764150431466766788851----138898718886657706634778740789999998658


Q ss_pred             HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCC---CC-----CCC----------C
Q ss_conf             53100533322550466667889999999898--0887533456666823475457---99-----986----------6
Q gi|254780836|r  230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKNIQQGSTLS---KD-----LFT----------G  289 (674)
Q Consensus       230 ~~~~~~~~~~~~lyGQEin~~tyaIak~nMli--~g~~~d~~~~~~~NI~~GdTL~---~d-----~~~----------~  289 (674)
T Consensus       870 ~ed-l~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~--~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~  946 (1518)
T COG4889         870 DED-LKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDL--KNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKE  946 (1518)
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCEECCHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf             899-9999985530778799999999862798765414871--1378715402354422354556545753789986137


Q ss_pred             CEEEEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCC--CCC--CCCCCHHHH--HHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             41899981685676531000111234422-666653--577--774770659--99999999614665788079997389
Q gi|254780836|r  290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRF--GPG--LPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSS  362 (674)
Q Consensus       290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~-~~~~Rf--~~g--lP~~sdg~~--lFlqh~i~klk~~~~~ggr~aIV~ng  362 (674)
T Consensus       947 ipI~VIiGNPPYS~gqks~nd-nn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyir-a~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889         947 IPIRVIIGNPPYSAGQKSEND-NNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIR-AIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred             CCEEEEECCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEECC
T ss_conf             854999179987656567676-554556622788999987202212023425899999-999876531568559999569


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC--------------CCCCC-CCCCCEEEEEEECCCCCCCCCCEEEEEC
Q ss_conf             71347764432689999998849468883176--------------77655-7886169999946887434883899723
Q gi|254780836|r  363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALP--------------TDLFF-RTNIATYLWILSNRKTEERRGKVQLINA  427 (674)
Q Consensus       363 s~LF~G~agsGEs~IRk~lie~d~ieaII~LP--------------~~lFy-nTgI~t~Iwil~k~K~~~rkgkV~lIDA  427 (674)
T Consensus      1025 gfI-DgnsaDG---~R~sla~dfs~iYvlNLrGn~Rt~ge~sk~EGg~iFd~gsrvtvaIi~~vKd~~~~-~~~I~Y~di 1099 (1518)
T COG4889        1025 GFI-DGNSADG---FRKSLAQDFSHIYVLNLRGNQRTSGELSKKEGGNIFDSGSRVTVAIIFFVKDKDTP-GCRIFYYDI 1099 (1518)
T ss_pred             CEE-CCCCCHH---HHHHHHHHHHHHEEEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEEH
T ss_conf             530-3754117---89999987555457743477554304667507860046764159999997268899-975899516


Q ss_pred             HHH
Q ss_conf             677
Q gi|254780836|r  428 TDL  430 (674)
Q Consensus       428 s~~  430 (674)
T Consensus      1100 gdy 1102 (1518)
T COG4889        1100 GDY 1102 (1518)
T ss_pred             HHH
T ss_conf             556