HHsearch alignment for GI: 254780836 and conserved domain: COG4889
>COG4889 Predicted helicase [General function prediction only].
Probab=99.27 E-value=5.9e-10 Score=84.45 Aligned_cols=262 Identities=16% Similarity=0.203 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCC-----CCCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 43899999999986227665753681799999999731784011013-----8776403117665404689999999998
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-----SPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~-----~p~~~~tIyDPaCGTGGmL~~a~~~i~~ 229 (674)
T Consensus 794 Ik~LY~~FFk~aFKkqsE~LGIVyTPiEVVDFIlra~----d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs 869 (1518)
T COG4889 794 IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRAT----DDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALIS 869 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHC----CHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 9999999999999876764150431466766788851----138898718886657706634778740789999998658
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCC---CC-----CCC----------C
Q ss_conf 53100533322550466667889999999898--0887533456666823475457---99-----986----------6
Q gi|254780836|r 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKNIQQGSTLS---KD-----LFT----------G 289 (674)
Q Consensus 230 ~~~~~~~~~~~~lyGQEin~~tyaIak~nMli--~g~~~d~~~~~~~NI~~GdTL~---~d-----~~~----------~ 289 (674)
T Consensus 870 ~ed-l~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~--~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ 946 (1518)
T COG4889 870 DED-LKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDL--KNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKE 946 (1518)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCEECCHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 899-9999985530778799999999862798765414871--1378715402354422354556545753789986137
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCC--CCC--CCCCCHHHH--HHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 41899981685676531000111234422-666653--577--774770659--99999999614665788079997389
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRF--GPG--LPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~-~~~~Rf--~~g--lP~~sdg~~--lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
T Consensus 947 ipI~VIiGNPPYS~gqks~nd-nn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyir-a~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 947 IPIRVIIGNPPYSAGQKSEND-NNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIR-AIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred CCEEEEECCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEECC
T ss_conf 854999179987656567676-554556622788999987202212023425899999-999876531568559999569
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC--------------CCCCC-CCCCCEEEEEEECCCCCCCCCCEEEEEC
Q ss_conf 71347764432689999998849468883176--------------77655-7886169999946887434883899723
Q gi|254780836|r 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALP--------------TDLFF-RTNIATYLWILSNRKTEERRGKVQLINA 427 (674)
Q Consensus 363 s~LF~G~agsGEs~IRk~lie~d~ieaII~LP--------------~~lFy-nTgI~t~Iwil~k~K~~~rkgkV~lIDA 427 (674)
T Consensus 1025 gfI-DgnsaDG---~R~sla~dfs~iYvlNLrGn~Rt~ge~sk~EGg~iFd~gsrvtvaIi~~vKd~~~~-~~~I~Y~di 1099 (1518)
T COG4889 1025 GFI-DGNSADG---FRKSLAQDFSHIYVLNLRGNQRTSGELSKKEGGNIFDSGSRVTVAIIFFVKDKDTP-GCRIFYYDI 1099 (1518)
T ss_pred CEE-CCCCCHH---HHHHHHHHHHHHEEEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEEH
T ss_conf 530-3754117---89999987555457743477554304667507860046764159999997268899-975899516
Q ss_pred HHH
Q ss_conf 677
Q gi|254780836|r 428 TDL 430 (674)
Q Consensus 428 s~~ 430 (674)
T Consensus 1100 gdy 1102 (1518)
T COG4889 1100 GDY 1102 (1518)
T ss_pred HHH
T ss_conf 556