HHsearch alignment for GI: 254780836 and conserved domain: PRK00274

>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=95.75  E-value=0.043  Score=33.13  Aligned_cols=187  Identities=14%  Similarity=0.206  Sum_probs=101.4

Q ss_pred             HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf             999999862276657536-8179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r  161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI  239 (674)
Q Consensus       161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~  239 (674)
T Consensus         4 ~~l~~~~~~~kK~lGQnFL~d~~ii~kIv~~~~----------~~~~d~VlEIGpG~G~-LT~~---Ll~~~--------   61 (267)
T PRK00274          4 ELLEHYGHRAKKSLGQNFLIDENIIDKIVRAAD----------LQPGDRVLEIGPGLGA-LTEP---LLERA--------   61 (267)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCCH-HHHH---HHHHC--------
T ss_conf             999876999887778221489899999999608----------9999907996388888-9999---99626--------


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             25504666678899999998980887533456666823475457999--8664189998168567653100011123442
Q gi|254780836|r  240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK  317 (674)
Q Consensus       240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~--~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~  317 (674)
T Consensus        62 ~~v~aiEiD~~l~~~L------~~~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~Iss~----il~~~l~  124 (267)
T PRK00274         62 AKVTAIEIDRDLAPIL------RET-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYNISTP----LLFKLLE  124 (267)
T ss_pred             CCEEEEECCHHHHHHH------HHC-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCHHHHH----HHHHHHH
T ss_conf             8058863688999998------504-------7869996506647867745678727995588303128----9999985


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             26666535777747706599999999961466578807999738971347764432689999998849468883176776
Q gi|254780836|r  318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL  397 (674)
Q Consensus       318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~l  397 (674)
T Consensus       125 --~-------~~~~~~~vlmv-QkEv---------A~Ri~-a~p~~k~y-----~~LSv~~q~---~~~~~~~~~V~~~~  176 (267)
T PRK00274        125 --E-------APPIRDMVLML-QKEV---------AERIV-AKPGSKAY-----GRLSVLLQY---YADVEKVFDVPPSA  176 (267)
T ss_pred             --C-------CCCHHHHHHHH-HHHH---------HHHHH-CCCCCCCC-----CHHHHHHHH---HHHEEEEEEECHHH
T ss_conf             --4-------75412400111-5877---------77762-47999751-----688999999---86331211576776


Q ss_pred             CCC-CCCCEEEEEEECCC
Q ss_conf             557-88616999994688
Q gi|254780836|r  398 FFR-TNIATYLWILSNRK  414 (674)
Q Consensus       398 Fyn-TgI~t~Iwil~k~K  414 (674)
T Consensus       177 F~P~PkVdS~vi~l~p~~  194 (267)
T PRK00274        177 FYPPPKVDSAVVRLVPKE  194 (267)
T ss_pred             CCCCCCCEEEEEEEEECC
T ss_conf             567987417999999789