HHsearch alignment for GI: 254780836 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=98.37 E-value=5.2e-06 Score=58.67 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=71.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
T Consensus 198 g~VLDlGCG~Gvi~~~----la~~~p~------~~v~l~Dv~a~Al~~ar~nl~~N~l~~--------~v~~sd~~~~v- 258 (342)
T PRK09489 198 GKVLDVGCGAGVLSAV----LAQHSPK------IRLTLCDVSAPAVEASRATLAANGLEG--------EVFASNVFSEI- 258 (342)
T ss_pred CCEEEECCCHHHHHHH----HHHHCCC------CEEEEEECCHHHHHHHHHHHHHHCCCC--------EEEECCCCCCC-
T ss_conf 8478606781799999----9986999------769999688999999999899809886--------89975644565-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
T Consensus 259 --~~~fD~IvsNPPFH~G~~~~~-----------------------~i~~~fi~~A~~~L~~----gG~L~iVANr 305 (342)
T PRK09489 259 --KGRFDMIISNPPFHDGIQTSL-----------------------DAAQTLIRGAVRHLNS----GGELRIVANA 305 (342)
T ss_pred --CCCCCEEEECCCCCCCCCCCH-----------------------HHHHHHHHHHHHHHHC----CCEEEEEECC
T ss_conf --567898996885215752658-----------------------9999999999986124----9889999818