HHsearch alignment for GI: 254780836 and conserved domain: TIGR00406
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=94.74 E-value=0.18 Score=29.12 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
T Consensus 175 TGtH~TT~----LCLe~L-----~~~d-~k~kh~~viD~GCGSGI-L~IAa~~LG----------a~~~~g~D~DP~Ave 233 (330)
T TIGR00406 175 TGTHPTTS----LCLELL-----EDLD-LKDKHKKVIDVGCGSGI-LSIAALKLG----------AAKVVGIDIDPLAVE 233 (330)
T ss_pred CCCCHHHH----HHHHHH-----HCCC-CCCCCCEEEEECCCHHH-HHHHHHHHH----------HHHEEEECCCHHHHH
T ss_conf 89745789----999987-----4014-77766547871267178-999999751----------231122137728999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCC
Q ss_conf 999998980887533456666823475457-99986641899981685
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPP 300 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNPP 300 (674)
T Consensus 234 ~~r~N~~lN~v~~~~------~~~~~~~vPe~~~~~e~~~DViVANiL 275 (330)
T TIGR00406 234 SARKNAELNQVSDRL------QVKLENSVPELEQPIEGKADVIVANIL 275 (330)
T ss_pred HHHHHHHHCCCCHHH------HHHHCCCCCCCCCCCCCCCCEEEECCH
T ss_conf 999768745886457------643205787534532256675788002