HHsearch alignment for GI: 254780836 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.09 E-value=0.0014 Score=42.74 Aligned_cols=73 Identities=25% Similarity=0.431 Sum_probs=46.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 311766540468999999999853100533-32255046666788999999989808875334566668234754579--
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-- 284 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~-~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-- 284 (674)
T Consensus 16 RVLDLGCGdG~LL~~----L~d~k~v~GPPttehRL~G~Eid~~~v~Ac----~~RGv~V----------Iq~D-ld~GL 76 (205)
T TIGR02081 16 RVLDLGCGDGELLAL----LRDEKQVRGPPTTEHRLYGIEIDQDGVLAC----VARGVSV----------IQGD-LDEGL 76 (205)
T ss_pred EEEEECCCCHHHHHH----HHHHCCCCCCCCCCCEEEEEEECHHHHHHH----HHCCCCE----------ECCC-CCCCC
T ss_conf 364101688789999----997437898887120001023454459999----8625201----------3006-00340
Q ss_pred CCCCCCEEEEEEECC
Q ss_conf 998664189998168
Q gi|254780836|r 285 DLFTGKRFHYCLSNP 299 (674)
Q Consensus 285 d~~~~~kFD~vlaNP 299 (674)
T Consensus 77 ~~F~D~~FD~ViLsQ 91 (205)
T TIGR02081 77 EAFPDKSFDYVILSQ 91 (205)
T ss_pred CCCCCCCCCEEEECH
T ss_conf 116788766254213