HHsearch alignment for GI: 254780836 and conserved domain: TIGR02085
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=95.95 E-value=0.011 Score=37.11 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=52.7
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
T Consensus 238 ~~~mWDLFCGVGGFgLHCAkalqek---w--~p~~~lTGIEI~~eAIa~A~~SA~~lGl~---------~~~F~-aLDsa 302 (386)
T TIGR02085 238 VKQMWDLFCGVGGFGLHCAKALQEK---W--GPDTQLTGIEIESEAIACAKQSAKILGLE---------NLSFA-ALDSA 302 (386)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH---C--CCCEEEEEEEECHHHHHHHHHHHHHHCHH---------HHHHH-HHHHH
T ss_conf 1103201046541278998987641---5--89704431343778999999999873533---------21045-44579
Q ss_pred CC---CC-CEEEEEEECCCC
Q ss_conf 98---66-418999816856
Q gi|254780836|r 286 LF---TG-KRFHYCLSNPPF 301 (674)
Q Consensus 286 ~~---~~-~kFD~vlaNPPF 301 (674)
T Consensus 303 ~f~~~~~e~~PeLVlVNPPR 322 (386)
T TIGR02085 303 KFATAQAESVPELVLVNPPR 322 (386)
T ss_pred HHHHHHCCCCCCEEEECCCC
T ss_conf 99986236889657767888