HHsearch alignment for GI: 254780836 and conserved domain: TIGR03533
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=3.8e-09 Score=79.18 Aligned_cols=151 Identities=17% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCHH-HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 36817-99999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 177 FMTPR-DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 177 ffTPR-~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
T Consensus 98 VLIPR~~teeLv~~~l~----~~~--~~~~~~~iLDlGtGSG~Iai~la~~~----p------~~~v~a~DiS~~Al~~A 161 (284)
T TIGR03533 98 VLIPRSPIAELIEDGFA----PWL--EPEPVKRILDLCTGSGCIAIACAYAF----P------EAEVDAVDISPDALAVA 161 (284)
T ss_pred CEECCCCCHHHHHHHHH----HHH--CCCCCCEEEEECCCCHHHHHHHHHHC----C------CCEEEEEECCHHHHHHH
T ss_conf 54389971999999999----984--23677715552168079999999878----9------98799998999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCH
Q ss_conf 999898088753345666682347545799986641899981685676531000111234422666653577--774770
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sd 333 (674)
T Consensus 162 ~~N~~~~~l~~r------v~~~~~D~~~~--~~~~~fDlIVSNPPYI~~--~e~~~l~~ev------~~EP~~AL~gG~d 225 (284)
T TIGR03533 162 EINIERHGLEDR------VTLIQSDLFAA--LPGRKYDLIVSNPPYVDA--EDMADLPAEY------HHEPELALASGED 225 (284)
T ss_pred HHHHHHHCCCCC------EEEEECCHHHH--CCCCCCCEEEECCCCCCH--HHHHHCCHHH------CCCCHHHHCCCCC
T ss_conf 999986085433------68883514331--457777879977997884--6554497641------1586998758955
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 659999999996146657880799973
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
T Consensus 226 G-L~~yr~Ii~~a~~~L~pgG~l~lEi 251 (284)
T TIGR03533 226 G-LDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred H-HHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8-7999999998898425697899997