HHsearch alignment for GI: 254780836 and conserved domain: TIGR03534
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.04 E-value=8.6e-10 Score=83.38 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
T Consensus 66 VLIPRpETE~Lve~~l~~----~~~---~~~~ilDlgtGSG~I~i~la~~~----------~~~~v~~~Dis~~Al~~A~ 128 (251)
T TIGR03534 66 VLIPRPDTEELVEAALER----LKK---GPLKVLDLGTGSGAIALALAKER----------PDARVTAVDISPEALAVAR 128 (251)
T ss_pred EEEECCCHHHHHHHHHHH----HCC---CCCEEEEECCCHHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf 786488339999999997----314---89869995567169999999967----------9978999989879999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 998980887533456666823475457999866418999816856765--310001112344226666535777747706
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674)
T Consensus 129 ~N~~~~~~~~-------v~~~~~d~~~~--~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~-----~EP~~--AL~gg~dG 192 (251)
T TIGR03534 129 KNAKRLGLEN-------VRFLKSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----HEPKL--ALFAGEDG 192 (251)
T ss_pred HHHHHCCCCE-------EEEEECCHHHC--CCCCCCCEEEECCCCCCHHHHHHCCCHHCC-----CCHHH--HHCCCCCH
T ss_conf 9999809982-------68651314321--568986689978998874566632860102-----67299--97179846
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 59999999996146657880799973897134776443268999999884946
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674)
T Consensus 193 -l~~~~~ii~~a~~~L~~~G~l~~Ei--g------~~q-~~~v~~l~~~~gf~ 235 (251)
T TIGR03534 193 -LDFYRRIIAQAPRYLKPGGWLLLEI--G------YDQ-GEAVRALFEAAGFA 235 (251)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEE--C------HHH-HHHHHHHHHHCCCC
T ss_conf -9999999999998536798899996--8------378-99999999968997