HHsearch alignment for GI: 254780836 and conserved domain: TIGR03534

>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.04  E-value=8.6e-10  Score=83.38  Aligned_cols=168  Identities=17%  Similarity=0.191  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf             36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r  177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV  256 (674)
Q Consensus       177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak  256 (674)
T Consensus        66 VLIPRpETE~Lve~~l~~----~~~---~~~~ilDlgtGSG~I~i~la~~~----------~~~~v~~~Dis~~Al~~A~  128 (251)
T TIGR03534        66 VLIPRPDTEELVEAALER----LKK---GPLKVLDLGTGSGAIALALAKER----------PDARVTAVDISPEALAVAR  128 (251)
T ss_pred             EEEECCCHHHHHHHHHHH----HCC---CCCEEEEECCCHHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf             786488339999999997----314---89869995567169999999967----------9978999989879999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             998980887533456666823475457999866418999816856765--310001112344226666535777747706
Q gi|254780836|r  257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDG  334 (674)
Q Consensus       257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg  334 (674)
T Consensus       129 ~N~~~~~~~~-------v~~~~~d~~~~--~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~-----~EP~~--AL~gg~dG  192 (251)
T TIGR03534       129 KNAKRLGLEN-------VRFLKSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----HEPKL--ALFAGEDG  192 (251)
T ss_pred             HHHHHCCCCE-------EEEEECCHHHC--CCCCCCCEEEECCCCCCHHHHHHCCCHHCC-----CCHHH--HHCCCCCH
T ss_conf             9999809982-------68651314321--568986689978998874566632860102-----67299--97179846


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf             59999999996146657880799973897134776443268999999884946
Q gi|254780836|r  335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI  387 (674)
Q Consensus       335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i  387 (674)
T Consensus       193 -l~~~~~ii~~a~~~L~~~G~l~~Ei--g------~~q-~~~v~~l~~~~gf~  235 (251)
T TIGR03534       193 -LDFYRRIIAQAPRYLKPGGWLLLEI--G------YDQ-GEAVRALFEAAGFA  235 (251)
T ss_pred             -HHHHHHHHHHHHHHCCCCCEEEEEE--C------HHH-HHHHHHHHHHCCCC
T ss_conf             -9999999999998536798899996--8------378-99999999968997