Query gi|254780836|ref|YP_003065249.1| putative type I restriction-modification system DNA methylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 674
No_of_seqs 263 out of 1074
Neff 5.3
Searched_HMMs 39220
Date Sun May 29 23:54:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780836.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0286 HsdM Type I restrictio 100.0 0 0 656.9 30.8 427 8-483 4-443 (489)
2 pfam02384 N6_Mtase N-6 DNA Met 100.0 0 0 616.5 27.8 285 151-472 2-290 (312)
3 TIGR00497 hsdM type I restrict 100.0 0 0 347.1 17.2 424 8-470 2-471 (516)
4 TIGR02987 met_A_Alw26 type II 99.8 2.5E-17 6.3E-22 132.6 14.9 245 172-426 1-295 (603)
5 pfam01170 UPF0020 Putative RNA 99.5 3.1E-13 8E-18 105.8 10.4 96 182-304 15-110 (171)
6 pfam12161 HsdM_N HsdM N-termin 99.4 7.6E-14 1.9E-18 109.8 3.1 85 11-139 1-92 (92)
7 COG1041 Predicted DNA modifica 99.4 4.9E-11 1.3E-15 91.5 14.8 165 179-412 181-346 (347)
8 COG4889 Predicted helicase [Ge 99.3 5.9E-10 1.5E-14 84.4 15.5 262 155-430 794-1102(1518)
9 COG0116 Predicted N6-adenine-s 99.2 4.1E-11 1.1E-15 92.0 7.3 87 206-304 192-312 (381)
10 TIGR03534 RF_mod_HemK protein- 99.0 8.6E-10 2.2E-14 83.4 7.5 168 177-387 66-235 (251)
11 TIGR03533 L3_gln_methyl protei 99.0 3.8E-09 9.7E-14 79.2 8.4 151 177-360 98-251 (284)
12 pfam05175 MTS Methyltransferas 99.0 1E-08 2.6E-13 76.4 10.3 110 207-362 33-142 (170)
13 PRK11805 N5-glutamine S-adenos 98.9 9.7E-09 2.5E-13 76.5 9.3 150 177-359 110-262 (307)
14 PRK01544 bifunctional N5-gluta 98.9 4.8E-08 1.2E-12 72.0 11.1 148 205-387 135-284 (503)
15 PRK09328 N5-glutamine S-adenos 98.9 3.6E-08 9.2E-13 72.8 10.3 168 177-388 88-257 (277)
16 PRK09329 N5-glutamine S-adenos 98.8 2E-06 5.2E-11 61.4 17.5 187 177-415 86-276 (285)
17 COG2890 HemK Methylase of poly 98.7 2.3E-07 5.9E-12 67.5 10.9 166 176-386 88-255 (280)
18 PRK11783 rlmL 23S rRNA m(2)G24 98.7 6.5E-08 1.7E-12 71.1 6.8 92 208-306 197-322 (716)
19 KOG2671 consensus 98.6 1.1E-07 2.9E-12 69.6 7.5 173 155-361 168-355 (421)
20 COG4123 Predicted O-methyltran 98.4 1.4E-06 3.7E-11 62.4 8.1 124 206-361 45-171 (248)
21 pfam07669 Eco57I Eco57I restri 98.4 2.9E-06 7.3E-11 60.4 9.5 103 290-415 1-105 (106)
22 COG2263 Predicted RNA methylas 98.4 1.4E-06 3.5E-11 62.5 7.7 166 174-411 21-195 (198)
23 pfam02475 Met_10 Met-10+ like- 98.4 2.6E-06 6.6E-11 60.7 8.8 111 176-348 81-193 (199)
24 PRK09489 rsmC 16S ribosomal RN 98.4 5.2E-06 1.3E-10 58.7 9.9 108 207-362 198-305 (342)
25 pfam09445 Methyltransf_15 RNA 98.3 2.2E-06 5.6E-11 61.1 7.2 79 207-303 2-83 (165)
26 pfam11599 AviRa RRNA methyltra 98.2 1.6E-05 4.2E-10 55.5 9.7 73 179-262 28-100 (249)
27 COG2813 RsmC 16S RNA G1207 met 98.1 7.1E-05 1.8E-09 51.3 10.3 109 208-363 161-269 (300)
28 PHA02056 putative methyltransf 98.0 6.6E-06 1.7E-10 58.0 4.6 182 159-410 30-222 (279)
29 KOG3420 consensus 98.0 1.8E-05 4.6E-10 55.2 6.0 105 174-304 23-127 (185)
30 cd02440 AdoMet_MTases S-adenos 97.8 0.0001 2.6E-09 50.3 7.0 103 208-359 1-103 (107)
31 PRK00216 ubiE ubiquinone/menaq 97.7 0.00057 1.5E-08 45.4 9.6 82 203-304 49-132 (239)
32 pfam01209 Ubie_methyltran ubiE 97.6 0.00044 1.1E-08 46.1 8.5 80 203-301 45-126 (233)
33 TIGR00537 hemK_rel_arch methyl 97.6 0.0011 2.8E-08 43.5 9.9 145 208-399 24-174 (183)
34 pfam05971 Methyltransf_10 Prot 97.5 0.0021 5.3E-08 41.7 9.9 153 207-393 67-238 (254)
35 KOG2904 consensus 97.4 0.00035 9E-09 46.7 5.5 112 177-303 123-234 (328)
36 PRK10909 rsmD 16S rRNA m(2)G96 97.4 0.00045 1.2E-08 46.0 5.9 99 179-304 35-133 (198)
37 PRK08317 hypothetical protein; 97.4 0.0025 6.4E-08 41.2 9.5 197 202-461 16-223 (241)
38 pfam06325 PrmA Ribosomal prote 97.4 0.001 2.5E-08 43.8 7.4 94 174-301 141-234 (294)
39 PRK05031 tRNA (uracil-5-)-meth 97.3 0.001 2.5E-08 43.8 7.1 165 174-413 182-363 (363)
40 PRK11873 arsM arsenite S-adeno 97.3 0.0031 7.9E-08 40.6 9.4 106 205-359 73-178 (258)
41 PRK06202 hypothetical protein; 97.3 0.0011 2.9E-08 43.4 7.1 82 203-301 59-140 (233)
42 PRK03522 rumB 23S rRNA methylu 97.2 0.00089 2.3E-08 44.1 5.4 166 174-412 207-374 (375)
43 TIGR01177 TIGR01177 conserved 97.1 0.00034 8.7E-09 46.8 3.0 126 155-304 159-289 (358)
44 TIGR02081 metW methionine bios 97.1 0.0014 3.7E-08 42.7 5.8 73 208-299 16-91 (205)
45 pfam05958 tRNA_U5-meth_tr tRNA 97.1 0.0019 4.9E-08 42.0 6.2 164 174-412 172-352 (353)
46 PRK05134 3-demethylubiquinone- 97.0 0.0068 1.7E-07 38.4 8.9 205 163-414 9-221 (233)
47 PRK00517 prmA ribosomal protei 97.0 0.0031 8E-08 40.6 7.0 94 174-300 143-236 (298)
48 pfam03602 Cons_hypoth95 Conser 97.0 0.0025 6.4E-08 41.2 6.2 101 179-304 24-126 (181)
49 pfam01555 N6_N4_Mtase DNA meth 96.9 0.0021 5.5E-08 41.6 5.5 59 175-256 160-220 (221)
50 COG0827 Adenine-specific DNA m 96.9 0.011 2.8E-07 37.0 8.7 199 176-413 126-339 (381)
51 PRK11727 putative SAM-dependen 96.8 0.012 3.2E-07 36.6 8.9 101 183-303 97-204 (326)
52 COG2226 UbiE Methylase involve 96.8 0.0092 2.3E-07 37.5 7.8 138 155-325 13-153 (238)
53 PRK10901 16S rRNA methyltransf 96.8 0.03 7.7E-07 34.1 10.3 164 177-386 226-394 (428)
54 COG1092 Predicted SAM-dependen 96.7 0.048 1.2E-06 32.8 10.8 182 171-408 196-384 (393)
55 PRK13168 rumA 23S rRNA 5-methy 96.6 0.0031 8E-08 40.5 4.6 166 174-412 268-439 (440)
56 smart00828 PKS_MT Methyltransf 96.6 0.012 3.1E-07 36.8 7.3 103 208-360 2-104 (224)
57 pfam07021 MetW Methionine bios 96.6 0.0034 8.7E-08 40.3 4.4 78 185-299 5-83 (193)
58 KOG2187 consensus 96.6 0.0036 9.1E-08 40.2 4.4 121 157-301 343-465 (534)
59 PRK01683 trans-aconitate 2-met 96.5 0.031 7.8E-07 34.1 9.0 117 180-363 17-133 (252)
60 COG2264 PrmA Ribosomal protein 96.4 0.021 5.3E-07 35.2 7.7 96 173-299 142-237 (300)
61 PRK11524 putative methyltransf 96.4 0.0062 1.6E-07 38.6 4.9 29 275-303 10-39 (284)
62 PRK07580 Mg-protoporphyrin IX 96.4 0.044 1.1E-06 33.1 9.0 157 206-400 64-221 (230)
63 PRK13699 putative methylase; P 96.3 0.006 1.5E-07 38.7 4.3 28 276-303 4-32 (227)
64 pfam01189 Nol1_Nop2_Fmu NOL1/N 96.3 0.035 8.9E-07 33.7 8.1 167 175-388 64-237 (277)
65 pfam10672 Methyltrans_SAM S-ad 96.2 0.053 1.4E-06 32.5 8.7 103 170-301 101-205 (286)
66 COG2520 Predicted methyltransf 96.2 0.0086 2.2E-07 37.7 4.6 97 176-302 169-267 (341)
67 COG0742 N6-adenine-specific me 96.2 0.012 3.1E-07 36.7 5.4 80 207-303 45-126 (187)
68 TIGR02085 meth_trns_rumB 23S r 96.0 0.011 2.7E-07 37.1 4.2 81 206-301 238-322 (386)
69 PRK10258 biotin biosynthesis p 95.9 0.097 2.5E-06 30.8 9.0 196 179-459 26-233 (251)
70 TIGR01934 MenG_MenH_UbiE ubiqu 95.9 0.12 3E-06 30.2 9.5 112 206-326 44-159 (242)
71 PTZ00338 dimethyladenosine tra 95.9 0.05 1.3E-06 32.7 7.5 206 170-444 12-220 (296)
72 PRK00274 ksgA dimethyladenosin 95.7 0.043 1.1E-06 33.1 6.6 187 161-414 4-194 (267)
73 PRK00377 cbiT cobalt-precorrin 95.7 0.041 1.1E-06 33.2 6.3 146 178-392 23-169 (198)
74 pfam00398 RrnaAD Ribosomal RNA 95.6 0.081 2.1E-06 31.3 7.6 102 171-304 5-107 (258)
75 COG0030 KsgA Dimethyladenosine 95.4 0.081 2.1E-06 31.3 7.0 103 171-304 5-108 (259)
76 pfam08241 Methyltransf_11 Meth 95.4 0.038 9.6E-07 33.5 5.2 95 210-358 1-95 (95)
77 COG2265 TrmA SAM-dependent met 95.3 0.031 7.9E-07 34.1 4.6 143 132-301 217-372 (432)
78 TIGR00536 hemK_fam methyltrans 95.2 0.027 6.8E-07 34.5 4.0 113 176-303 97-211 (311)
79 KOG1540 consensus 95.1 0.098 2.5E-06 30.8 6.6 151 202-374 97-250 (296)
80 PRK07402 precorrin-6B methylas 95.0 0.11 2.8E-06 30.5 6.7 69 177-265 22-90 (196)
81 PRK08287 cobalt-precorrin-6Y C 95.0 0.14 3.7E-06 29.7 7.2 69 177-265 12-80 (186)
82 KOG1270 consensus 94.9 0.054 1.4E-06 32.5 4.8 99 206-349 90-188 (282)
83 pfam08242 Methyltransf_12 Meth 94.8 0.042 1.1E-06 33.2 4.2 95 210-349 1-95 (98)
84 TIGR00406 prmA ribosomal prote 94.7 0.18 4.5E-06 29.1 7.2 100 174-300 175-275 (330)
85 TIGR01983 UbiG ubiquinone bios 94.7 0.077 2E-06 31.5 5.3 193 155-400 30-262 (275)
86 COG3129 Predicted SAM-dependen 94.7 0.14 3.6E-06 29.7 6.5 100 182-303 59-165 (292)
87 COG2230 Cfa Cyclopropane fatty 94.5 0.27 6.9E-06 27.9 7.6 77 204-301 71-147 (283)
88 PRK11933 yebU rRNA (cytosine-C 94.1 0.46 1.2E-05 26.4 8.3 169 174-385 90-261 (471)
89 PRK05785 hypothetical protein; 93.6 0.19 4.9E-06 28.9 5.4 67 207-304 53-119 (225)
90 COG4106 Tam Trans-aconitate me 93.5 0.42 1.1E-05 26.7 7.0 205 180-462 16-232 (257)
91 TIGR02752 MenG_heptapren 2-hep 93.5 0.53 1.4E-05 26.0 7.5 79 206-303 46-124 (231)
92 PTZ00098 phosphoethanolamine N 93.4 0.45 1.2E-05 26.5 7.0 184 207-461 54-246 (263)
93 pfam01135 PCMT Protein-L-isoas 93.3 0.64 1.6E-05 25.5 8.0 99 174-299 52-150 (205)
94 PRK00312 pcm protein-L-isoaspa 92.5 0.84 2.1E-05 24.7 8.4 99 173-301 56-154 (213)
95 pfam03291 Pox_MCEL mRNA cappin 92.2 0.44 1.1E-05 26.5 5.6 41 206-257 64-104 (327)
96 COG0144 Sun tRNA and rRNA cyto 92.0 0.96 2.4E-05 24.3 11.7 169 177-389 137-312 (355)
97 PRK11036 putative metallothion 91.7 0.74 1.9E-05 25.1 6.3 116 158-301 5-122 (256)
98 TIGR00479 rumA 23S rRNA (uraci 91.4 1.1 2.9E-05 23.9 8.9 225 104-402 156-431 (434)
99 pfam03848 TehB Tellurite resis 90.8 1.3 3.2E-05 23.5 9.1 123 173-361 12-134 (192)
100 PRK09522 bifunctional anthrani 90.3 0.58 1.5E-05 25.8 4.6 65 109-191 177-243 (531)
101 TIGR00095 TIGR00095 putative m 90.3 0.87 2.2E-05 24.6 5.6 83 208-304 58-145 (210)
102 COG2242 CobL Precorrin-6B meth 90.0 1.5 3.8E-05 23.1 7.6 140 173-386 13-153 (187)
103 KOG2730 consensus 89.9 0.27 6.9E-06 27.9 2.8 103 175-304 72-178 (263)
104 TIGR00755 ksgA dimethyladenosi 89.9 1.1 2.7E-05 24.0 5.8 178 171-415 4-197 (277)
105 COG2521 Predicted archaeal met 89.6 0.077 2E-06 31.5 -0.3 83 202-300 131-214 (287)
106 smart00650 rADc Ribosomal RNA 89.5 1.1 2.9E-05 23.8 5.7 165 184-412 2-167 (169)
107 PRK03612 spermidine synthase; 89.3 0.45 1.1E-05 26.5 3.5 136 207-383 295-430 (516)
108 PRK04338 N(2),N(2)-dimethylgua 89.3 1.7 4.2E-05 22.8 10.1 75 171-265 22-101 (376)
109 PRK11524 putative methyltransf 88.8 0.56 1.4E-05 25.9 3.7 62 175-259 187-250 (284)
110 TIGR02469 CbiT precorrin-6Y C5 87.5 2.2 5.6E-05 22.0 7.5 68 179-265 3-72 (135)
111 KOG3191 consensus 87.3 1.6 4E-05 22.9 5.2 106 176-303 17-122 (209)
112 cd01837 SGNH_plant_lipase_like 87.2 0.67 1.7E-05 25.4 3.3 52 276-346 4-56 (315)
113 pfam08123 DOT1 Histone methyla 87.2 1.8 4.7E-05 22.5 5.5 110 162-298 11-129 (205)
114 pfam02353 CMAS Cyclopropane-fa 86.8 2.4 6E-05 21.8 6.8 76 205-301 62-137 (273)
115 COG2227 UbiG 2-polyprenyl-3-me 86.7 0.86 2.2E-05 24.7 3.6 73 206-300 60-133 (243)
116 COG0863 DNA modification methy 86.2 2 5E-05 22.3 5.2 60 175-255 201-260 (302)
117 KOG2912 consensus 86.2 0.53 1.4E-05 26.0 2.3 60 240-302 127-189 (419)
118 pfam01861 DUF43 Protein of unk 86.0 2.2 5.6E-05 22.0 5.4 31 290-349 111-141 (243)
119 PRK11207 tellurite resistance 85.9 1.7 4.2E-05 22.8 4.7 92 173-301 12-105 (198)
120 PRK13942 protein-L-isoaspartat 84.8 2.9 7.5E-05 21.1 7.9 99 174-299 55-153 (214)
121 TIGR02021 BchM-ChlM magnesium 83.3 1.9 4.9E-05 22.4 4.1 157 203-402 52-220 (224)
122 PRK13944 protein-L-isoaspartat 82.9 3.5 9E-05 20.6 8.1 100 174-299 51-150 (205)
123 PRK01581 speE spermidine synth 82.6 2.4 6.2E-05 21.7 4.4 100 243-370 167-266 (363)
124 PRK00811 spermidine synthase; 82.6 3 7.6E-05 21.1 4.8 144 208-406 81-227 (283)
125 TIGR02072 BioC biotin biosynth 82.5 2.7 6.8E-05 21.4 4.6 213 181-465 17-257 (272)
126 KOG0820 consensus 82.4 3.7 9.4E-05 20.5 6.6 105 170-304 32-136 (315)
127 PRK11088 rrmA 23S rRNA methylt 81.4 4 0.0001 20.3 7.8 91 177-298 66-158 (272)
128 TIGR03587 Pse_Me-ase pseudamin 81.2 4.1 0.0001 20.2 6.3 72 203-298 41-112 (204)
129 COG2519 GCD14 tRNA(1-methylade 81.2 4.1 0.0001 20.2 10.1 125 173-362 73-197 (256)
130 KOG1122 consensus 80.8 3.1 7.8E-05 21.0 4.4 86 202-302 238-323 (460)
131 COG1867 TRM1 N2,N2-dimethylgua 80.4 4.3 0.00011 20.0 9.8 291 172-571 24-350 (380)
132 pfam02005 TRM N2,N2-dimethylgu 78.3 5 0.00013 19.6 9.3 80 172-265 16-100 (375)
133 KOG1541 consensus 76.9 3.9 9.9E-05 20.4 3.9 71 206-300 51-121 (270)
134 PRK11705 cyclopropane fatty ac 76.6 5.6 0.00014 19.3 6.7 73 204-301 166-238 (383)
135 pfam08704 GCD14 tRNA methyltra 76.5 5.6 0.00014 19.3 10.9 124 202-387 101-227 (309)
136 pfam01564 Spermine_synth Sperm 73.5 6.7 0.00017 18.8 6.8 149 209-411 79-231 (240)
137 pfam10923 DUF2791 Protein of u 71.1 6.4 0.00016 19.0 3.8 13 156-168 111-123 (267)
138 TIGR01135 glmS glucosamine--fr 70.0 7.7 0.0002 18.4 4.1 39 173-211 189-230 (628)
139 KOG1707 consensus 69.7 8.1 0.00021 18.3 4.6 19 208-226 248-266 (625)
140 KOG0919 consensus 69.5 2.1 5.4E-05 22.1 1.1 74 209-301 6-79 (338)
141 COG4076 Predicted RNA methylas 68.2 3.9 1E-04 20.3 2.3 69 208-298 35-103 (252)
142 COG3963 Phospholipid N-methylt 68.1 8.8 0.00022 18.1 5.9 102 170-302 22-128 (194)
143 KOG1271 consensus 67.0 9.2 0.00023 17.9 6.6 195 157-410 23-224 (227)
144 KOG2078 consensus 63.9 3.2 8.1E-05 20.9 1.1 47 207-265 251-297 (495)
145 TIGR01245 trpD anthranilate ph 63.7 5.7 0.00015 19.3 2.4 34 179-218 45-79 (331)
146 COG0421 SpeE Spermidine syntha 63.2 11 0.00028 17.5 7.5 118 207-368 78-197 (282)
147 COG2518 Pcm Protein-L-isoaspar 60.4 12 0.00031 17.1 7.9 108 155-299 38-146 (209)
148 PRK00121 trmB tRNA (guanine-N( 59.9 12 0.00031 17.1 6.0 117 208-365 57-175 (229)
149 pfam01596 Methyltransf_3 O-met 58.5 13 0.00033 16.9 9.2 157 175-395 24-194 (204)
150 pfam00145 DNA_methylase C-5 cy 58.2 13 0.00034 16.9 4.2 69 208-301 2-70 (319)
151 TIGR00653 GlnA glutamine synth 57.8 10 0.00026 17.6 2.9 64 393-469 265-339 (486)
152 KOG1544 consensus 57.8 9.8 0.00025 17.7 2.7 46 371-417 350-396 (470)
153 COG1871 CheD Chemotaxis protei 56.9 1.1 2.7E-05 24.0 -2.3 68 174-264 14-82 (164)
154 COG0270 Dcm Site-specific DNA 56.5 12 0.00032 17.1 3.1 132 207-387 4-141 (328)
155 TIGR01941 nqrF NADH:ubiquinone 55.8 14 0.00036 16.7 3.3 19 552-570 399-417 (425)
156 pfam05869 Dam DNA N-6-adenine- 53.9 5.8 0.00015 19.2 1.0 27 175-215 12-38 (179)
157 PRK09224 threonine dehydratase 53.7 12 0.0003 17.2 2.6 76 155-249 124-206 (504)
158 COG0338 Dam Site-specific DNA 53.3 9.3 0.00024 17.9 2.0 10 293-302 176-185 (274)
159 pfam12128 DUF3584 Protein of u 52.9 16 0.00041 16.3 6.0 11 26-36 140-150 (1192)
160 TIGR00742 yjbN TIM-barrel prot 51.0 14 0.00034 16.8 2.5 18 146-163 134-151 (326)
161 COG1565 Uncharacterized conser 50.9 17 0.00044 16.1 5.0 115 173-302 44-160 (370)
162 COG4982 3-oxoacyl-[acyl-carrie 50.2 18 0.00045 16.1 4.5 58 336-393 523-599 (866)
163 pfam10237 N6-adenineMlase Prob 49.5 7.2 0.00018 18.6 1.0 13 290-302 84-96 (161)
164 pfam03971 IDH Monomeric isocit 48.9 17 0.00044 16.2 2.8 84 352-450 427-521 (735)
165 COG1568 Predicted methyltransf 48.8 19 0.00047 15.9 4.0 47 289-365 219-265 (354)
166 COG1002 Type II restriction en 47.5 7.2 0.00018 18.6 0.7 25 206-230 245-269 (786)
167 PRK10717 cysteine synthase A; 47.4 14 0.00036 16.7 2.2 33 210-248 180-212 (334)
168 PRK08289 glyceraldehyde-3-phos 47.4 20 0.0005 15.8 3.6 57 133-191 73-148 (479)
169 pfam02390 Methyltransf_4 Putat 46.8 20 0.00051 15.7 6.6 127 208-385 23-154 (199)
170 PRK13943 protein-L-isoaspartat 46.7 20 0.00051 15.7 6.5 70 177-265 57-126 (317)
171 KOG1670 consensus 46.2 9.5 0.00024 17.8 1.1 121 292-430 41-169 (212)
172 COG1026 Predicted Zn-dependent 45.8 21 0.00053 15.6 3.6 61 374-461 437-497 (978)
173 KOG1478 consensus 44.7 21 0.00053 15.6 2.7 31 148-188 133-163 (341)
174 pfam01726 LexA_DNA_bind LexA D 43.9 16 0.00042 16.3 2.1 30 94-123 9-40 (65)
175 COG0220 Predicted S-adenosylme 42.8 23 0.00058 15.3 7.2 114 208-362 51-166 (227)
176 smart00596 PRE_C2HC PRE_C2HC d 42.4 18 0.00047 16.0 2.1 25 463-487 42-66 (69)
177 pfam09243 Rsm22 Mitochondrial 42.3 23 0.00059 15.3 9.3 127 207-386 36-162 (275)
178 PRK00188 trpD anthranilate pho 42.0 22 0.00055 15.5 2.4 34 179-218 51-84 (339)
179 KOG1932 consensus 42.0 24 0.0006 15.3 6.4 164 422-611 576-752 (1180)
180 pfam05442 Microvirus_A Microvi 41.6 5.1 0.00013 19.6 -0.8 29 630-658 129-157 (161)
181 pfam11394 DUF2875 Protein of u 41.4 24 0.00061 15.2 3.2 105 377-483 323-433 (451)
182 PTZ00295 glucosamine-fructose- 41.2 24 0.00062 15.2 4.4 24 354-384 376-399 (691)
183 PRK13760 putative RNA-associat 40.6 25 0.00063 15.1 4.3 42 352-398 162-210 (233)
184 KOG3350 consensus 40.0 13 0.00033 17.0 1.0 13 290-302 134-146 (217)
185 PRK12423 LexA repressor; Provi 39.9 17 0.00044 16.1 1.7 41 93-133 8-56 (202)
186 PRK11761 cysM cysteine synthas 39.6 7.3 0.00019 18.6 -0.3 33 209-247 170-202 (296)
187 pfam07530 PRE_C2HC Associated 39.0 22 0.00056 15.5 2.1 24 464-487 43-66 (68)
188 PRK13103 secA preprotein trans 38.3 11 0.00027 17.5 0.4 22 209-230 225-246 (913)
189 PRK12900 secA preprotein trans 38.3 11 0.00027 17.5 0.4 11 98-108 124-134 (983)
190 PRK00129 upp uracil phosphorib 37.2 22 0.00055 15.5 1.8 26 207-232 126-151 (208)
191 pfam01321 Creatinase_N Creatin 37.1 28 0.00071 14.8 5.6 57 375-437 3-62 (127)
192 TIGR03015 pepcterm_ATPase puta 36.4 29 0.00073 14.7 3.5 18 367-384 49-66 (269)
193 PRK13107 preprotein translocas 36.2 12 0.00031 17.2 0.4 10 98-107 112-121 (908)
194 PRK10696 C32 tRNA thiolase; Pr 36.1 29 0.00074 14.7 5.2 151 431-622 134-298 (311)
195 pfam02086 MethyltransfD12 D12 36.0 29 0.00074 14.7 4.6 10 293-302 178-187 (254)
196 PRK02006 murD UDP-N-acetylmura 35.8 27 0.00069 14.9 2.1 11 291-301 69-79 (501)
197 TIGR02204 MsbA_rel ABC transpo 35.4 12 0.00032 17.1 0.4 16 474-489 465-480 (576)
198 PRK12563 sulfate adenylyltrans 35.1 24 0.00062 15.2 1.8 38 374-427 201-238 (312)
199 KOG2198 consensus 34.8 30 0.00078 14.5 7.8 166 205-399 155-334 (375)
200 COG0031 CysK Cysteine synthase 33.4 20 0.00051 15.7 1.2 55 165-235 144-198 (300)
201 pfam03416 Peptidase_C54 Peptid 33.1 32 0.00083 14.4 3.8 50 133-191 73-122 (277)
202 TIGR01626 ytfJ_HI0045 conserve 32.8 33 0.00083 14.3 4.2 35 404-458 147-181 (184)
203 pfam05088 Bac_GDH Bacterial NA 32.5 4.7 0.00012 19.8 -2.2 76 376-454 987-1071(1526)
204 TIGR00979 fumC_II fumarate hyd 32.1 31 0.00079 14.5 1.9 14 31-44 32-46 (459)
205 TIGR02075 pyrH_bact uridylate 32.0 27 0.00069 14.9 1.6 31 173-220 107-137 (236)
206 PRK08639 threonine dehydratase 31.9 34 0.00086 14.2 2.6 49 185-248 165-213 (418)
207 PRK13489 chemoreceptor glutami 31.0 2.6 6.5E-05 21.5 -3.8 36 174-220 25-60 (237)
208 PRK12483 threonine dehydratase 30.6 35 0.0009 14.1 2.5 74 156-248 142-222 (521)
209 COG0114 FumC Fumarase [Energy 30.5 25 0.00064 15.1 1.3 11 242-252 195-205 (462)
210 KOG1252 consensus 30.3 28 0.00072 14.7 1.5 66 161-250 183-250 (362)
211 TIGR02090 LEU1_arch isopropylm 29.3 23 0.0006 15.3 0.9 43 143-191 130-182 (371)
212 PRK12335 tellurite resistance 28.6 38 0.00098 13.9 5.1 120 173-360 104-225 (289)
213 COG1899 DYS1 Deoxyhypusine syn 28.4 39 0.00099 13.8 5.1 72 150-223 130-201 (318)
214 TIGR03542 DAPAT_plant LL-diami 28.2 39 0.00099 13.8 5.6 61 155-222 12-83 (402)
215 COG3645 Uncharacterized phage- 27.7 7.9 0.0002 18.3 -1.7 19 372-390 59-77 (135)
216 TIGR00268 TIGR00268 conserved 27.5 21 0.00054 15.5 0.5 55 421-481 190-255 (263)
217 KOG4319 consensus 27.0 21 0.00053 15.6 0.3 18 209-226 17-38 (70)
218 COG0058 GlgP Glucan phosphoryl 26.8 41 0.0011 13.7 2.9 42 372-413 379-422 (750)
219 TIGR02938 nifL_nitrog nitrogen 26.7 41 0.0011 13.7 1.9 49 128-192 22-70 (496)
220 COG3823 Glutamine cyclotransfe 26.7 23 0.00059 15.3 0.5 55 372-431 65-122 (262)
221 pfam06450 NhaB Bacterial Na+/H 26.6 36 0.00092 14.0 1.5 16 176-191 292-307 (515)
222 PRK13497 chemoreceptor glutami 26.5 5.7 0.00015 19.3 -2.6 37 174-220 14-50 (184)
223 KOG0736 consensus 26.3 42 0.0011 13.6 2.5 38 341-379 412-449 (953)
224 pfam05401 NodS Nodulation prot 26.1 42 0.0011 13.6 5.0 71 205-298 43-113 (201)
225 cd00315 Cyt_C5_DNA_methylase C 25.9 43 0.0011 13.6 4.2 69 208-301 2-72 (275)
226 pfam01728 FtsJ FtsJ-like methy 25.2 44 0.0011 13.5 1.7 33 207-249 23-55 (176)
227 TIGR01485 SPP_plant-cyano sucr 24.8 28 0.00071 14.8 0.7 13 291-303 108-120 (257)
228 pfam00685 Sulfotransfer_1 Sulf 24.6 45 0.0012 13.4 2.6 22 437-458 227-248 (254)
229 PRK09547 nhaB sodium/proton an 24.3 40 0.001 13.8 1.4 16 176-191 292-307 (517)
230 KOG1503 consensus 24.1 34 0.00088 14.2 1.0 27 336-362 225-255 (354)
231 PRK13494 chemoreceptor glutami 24.0 7.3 0.00019 18.6 -2.4 76 163-263 6-82 (163)
232 PRK05926 hypothetical protein; 24.0 29 0.00075 14.6 0.6 31 156-186 131-161 (371)
233 pfam06134 RhaA L-rhamnose isom 23.8 32 0.00083 14.4 0.8 11 418-428 249-259 (416)
234 TIGR02978 phageshock_pspC phag 23.8 34 0.00086 14.2 0.9 41 634-674 74-117 (128)
235 PRK09234 fbiC FO synthase; Rev 23.7 25 0.00065 15.0 0.3 16 32-47 75-90 (846)
236 TIGR02814 pfaD_fam PfaD family 23.6 47 0.0012 13.3 2.4 88 356-456 249-338 (449)
237 PRK08638 threonine dehydratase 23.3 48 0.0012 13.2 2.2 30 213-248 182-211 (329)
238 cd00640 Trp-synth-beta_II Tryp 23.3 48 0.0012 13.2 2.0 28 213-246 160-187 (244)
239 PRK08526 threonine dehydratase 23.3 48 0.0012 13.2 2.1 76 156-248 125-204 (403)
240 TIGR01068 thioredoxin thioredo 23.1 46 0.0012 13.4 1.5 19 209-227 21-39 (101)
241 pfam08405 Calici_PP_N Viral po 23.0 49 0.0012 13.2 7.0 68 98-191 141-209 (358)
242 TIGR00235 udk uridine kinase; 22.9 49 0.0012 13.2 3.0 35 367-401 16-56 (220)
243 cd01327 KAZAL_PSTI Kazal-type 22.8 26 0.00066 15.0 0.2 12 208-219 7-18 (45)
244 PRK05253 sulfate adenylyltrans 22.8 49 0.0012 13.2 1.7 12 374-385 190-201 (300)
245 PRK00050 mraW S-adenosyl-methy 22.7 49 0.0013 13.2 4.3 41 208-257 26-66 (309)
246 TIGR01027 proB glutamate 5-kin 22.6 33 0.00085 14.3 0.7 31 213-246 210-240 (379)
247 PRK13345 superantigen-like pro 22.4 50 0.0013 13.1 2.0 45 376-429 171-223 (232)
248 PRK00215 LexA repressor; Valid 22.3 50 0.0013 13.1 2.4 29 94-122 7-37 (204)
249 PRK08198 threonine dehydratase 22.0 51 0.0013 13.1 2.2 35 207-248 174-208 (406)
250 PRK00770 deoxyhypusine synthas 22.0 51 0.0013 13.1 4.9 37 152-191 132-168 (386)
251 KOG2360 consensus 22.0 51 0.0013 13.1 6.4 87 202-304 210-297 (413)
252 TIGR02733 desat_CrtD C-3',4' d 21.8 35 0.0009 14.1 0.7 22 239-260 194-215 (499)
253 COG4262 Predicted spermidine s 21.6 52 0.0013 13.0 3.6 13 99-111 80-92 (508)
254 pfam04422 FrhB_FdhB_N Coenzyme 21.5 52 0.0013 13.0 2.1 21 374-394 23-43 (82)
255 PRK12443 uridylate kinase; Rev 21.3 52 0.0013 13.0 2.4 12 175-186 110-121 (247)
256 COG3673 Uncharacterized conser 21.0 53 0.0014 12.9 2.4 67 179-261 48-114 (423)
257 TIGR01066 rplM_bact ribosomal 20.9 53 0.0014 12.9 1.5 20 17-36 32-56 (145)
258 COG4122 Predicted O-methyltran 20.1 55 0.0014 12.8 9.9 143 157-370 25-173 (219)
No 1
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=100.00 E-value=0 Score=656.94 Aligned_cols=427 Identities=29% Similarity=0.467 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 88899999999987406888343087230548999896741233999999997202468896787653389610368036
Q gi|254780836|r 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYS 87 (674)
Q Consensus 8 ~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~F~n~s~~~ 87 (674)
.++|.++||++||.|||++++++|++|||+|+|||++++.++...++++++.. ......... . |+...+++
T Consensus 4 ~~~l~~~lw~~ad~lr~~~~~~~yk~~il~llflk~ls~~~~~~~~~~~~~~~-------~~~~~~~~~-~-~~i~~~~~ 74 (489)
T COG0286 4 QKELSDKLWKIADILRGDIDVSGYKDYILGLLFLKYLSDKFELEFEAELEEDN-------EAKYAYPAK-G-FFIPERYR 74 (489)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCC-------CHHHHCCCC-C-CCCCCCCH
T ss_conf 26799999999999862167655501034002799988887899999874222-------023322222-2-25663011
Q ss_pred HHHHHHH---HHHHHHHHH---HHHHCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 8861345---589999999---9752999899987177235775444236289999874024567333761144389999
Q gi|254780836|r 88 LSTLGST---NTRNNLESY---IASFSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEH 161 (674)
Q Consensus 88 ~~~l~~~---~~~~nl~~y---i~gfS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~ 161 (674)
|..+... ++..-+... |....++++++|..++|...+........+..++..|.+++.+ ..+.+.||++|||
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~G~~yE~ 152 (489)
T COG0286 75 FDDLKKNAEENLGDFLDNALRKIEEKNPDLKGVFADLDFNDALKLGSLLKLLNKVILKFDEIDGR--ALDRDLFGDAYEY 152 (489)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCCC--CCCCCCCHHHHHH
T ss_conf 99999753433778999999999874344315303461122221256599999999988502122--3354421588999
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99999862276657536817999999997317840110138776403117665404689999999998531005333225
Q gi|254780836|r 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 (674)
Q Consensus 162 LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~ 241 (674)
||++||+.+|++||||||||+|++|||++|.. ....+||||||||||||+++.+++.+.. . .+.
T Consensus 153 ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~----------~~~~~i~DpacGsgg~l~~a~~~~~~~~-~-----~~~ 216 (489)
T COG0286 153 LLRKFAEAEGKEAGEFYTPREVSELIVELLDP----------EPRNSIYDPACGSGGMLLQAAKYLKRHQ-D-----EIF 216 (489)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC----------CCCCCCCCCCCCCCHHHHHHHHHHHHHC-C-----CEE
T ss_conf 99998886275578605879999999997577----------6565234733540379999999997515-5-----504
Q ss_pred EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEEEEEECCCCC-CCCCCCHHHHHHHH
Q ss_conf 5046666788999999989808875334566668234754579998----664189998168567-65310001112344
Q gi|254780836|r 242 PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF----TGKRFHYCLSNPPFG-KKWEKDKDAVEKEH 316 (674)
Q Consensus 242 lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~----~~~kFD~vlaNPPFg-~~Wk~~~~~v~~e~ 316 (674)
+||||+|++||+||+|||++||++. ..+|.+||||++|.+ ...+||+|+|||||+ .+|.+... +
T Consensus 217 ~yGqE~~~~t~~l~~mN~~lhgi~~------~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~w~~~~~----~- 285 (489)
T COG0286 217 IYGQEINDTTYRLAKMNLILHGIEG------DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLL----E- 285 (489)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCC------CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC----C-
T ss_conf 9989566889999996116627874------2234334423687332346655501686579955444344331----0-
Q ss_pred HCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 2266665357777477065-999999999614665788079997389713477644326899999988494688831767
Q gi|254780836|r 317 KNGELGRFGPGLPKISDGS-MLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPT 395 (674)
Q Consensus 317 ~~~~~~Rf~~glP~~sdg~-~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~ 395 (674)
......+|.+|.|+.+.++ ++|+|||++++++ |||+|||++.|+||+|++ |..||+.|+++++++|||+||+
T Consensus 286 ~~~~~~~~~~g~~~~~~~~d~afi~h~~~~l~~----~g~aaivl~~gvlfr~~~---e~~IR~~l~~~~~~~~ii~lp~ 358 (489)
T COG0286 286 SEQDERFFFYGVFPTKNSADLAFLQHILYKLKP----GGRAAIVLPDGVLFRGGA---EKDIRKDLLEDNLLEAIIGLPT 358 (489)
T ss_pred CCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCC----CCCEEEEECCCCCCCCCC---HHHHHHHHHHHHHHEEEEECCC
T ss_conf 024320002577888952789999999997186----770589925886627772---2579999875031335342686
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEECCCCC
Q ss_conf 765578861699999468874348838997236776576404664420698999999999972102-5410474446630
Q gi|254780836|r 396 DLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN-GKFSRMLDYRTFG 474 (674)
Q Consensus 396 ~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e-~e~ski~~~~~Fg 474 (674)
++|||||||||||||+|+|+..++ +|+|||||.++. ++...+++ |+++||++|+.+|+.+++ ..+|++.+.++..
T Consensus 359 ~lF~~tgi~~~Il~l~k~k~~~~~-~~~fIdas~~~~--~~~~~~~~-l~~~~i~~i~~~~~~~~~~~~~~~~~~~~ei~ 434 (489)
T COG0286 359 GLFYNTGIPTNILFLTKNKPAERN-DVLFIDASKEHF--EKPLNKKR-LTEENIEKIVDTYREFKEIEGFSKSVSLEEIR 434 (489)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCC-CEEEEEHHHHHH--HCCHHHHC-CCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHH
T ss_conf 420357776089996158878777-569983345665--25635420-78767999999988632543221215899997
Q ss_pred EEEEEEECC
Q ss_conf 578997204
Q gi|254780836|r 475 YRRIKVLRP 483 (674)
Q Consensus 475 y~~vtverp 483 (674)
...+.+-.|
T Consensus 435 ~~~y~l~~~ 443 (489)
T COG0286 435 ENDYNLNPG 443 (489)
T ss_pred HCCCCCCCC
T ss_conf 367345754
No 2
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=100.00 E-value=0 Score=616.51 Aligned_cols=285 Identities=34% Similarity=0.626 Sum_probs=248.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 61144389999999998622766575368179999999973178401101387764031176654046899999999985
Q gi|254780836|r 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 (674)
Q Consensus 151 ~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~ 230 (674)
++|.||++|||||++||+++|++||||||||+|++|||+|+ .|....+||||||||||||++|.+|+++.
T Consensus 2 ~~D~~G~~yE~ll~~~a~~~g~~~GeffTPr~Vv~lmv~ll----------~p~~~~~V~DPacGtGgfLi~a~~~i~~~ 71 (312)
T pfam02384 2 SRDLFGDAYEYLLGKFANEEGKSGGEFYTPREVSKLIVELL----------EPKPGESIYDPACGSGGFLIQADKFVKSH 71 (312)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH----------CCCCCCEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 72033399999999999873875863588789999999982----------89999988216877337899999999984
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCCH
Q ss_conf 31005333225504666678899999998980887533456666823475457999866-41899981685676531000
Q gi|254780836|r 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDK 309 (674)
Q Consensus 231 ~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~-~kFD~vlaNPPFg~~Wk~~~ 309 (674)
.... ..+++||||+|+.+|+||+|||+|||++.. ..+|.+||||++|.+.. .+||+||||||||++|....
T Consensus 72 ~~~~---~~~~i~G~E~~~~~~~la~mNm~lhgi~~~-----~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~ 143 (312)
T pfam02384 72 DGDT---NDISIYGQELNPTTYRLARMNMILHGIEYN-----DFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDAND 143 (312)
T ss_pred CCCC---CCCEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 3785---565563688998999999999998479887-----45521477655767665455118983786466766543
Q ss_pred HHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 111234422666653-5777747706599999999961466578807999738971347764432689999998849468
Q gi|254780836|r 310 DAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674)
Q Consensus 310 ~~v~~e~~~~~~~Rf-~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674)
.... +.|| .+|+||++++++|||||++++|++ |||+|||+|+|+||+|++ |++||+||||+++|+
T Consensus 144 ~~~~-------~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~----~GraaiVlp~g~Lf~~~~---e~~iR~~lle~~~l~ 209 (312)
T pfam02384 144 NLEN-------DPRFRAYGVPPKSNADFAFLQHIIYHLSP----NGRAAVVLPNGVLFRGGA---EGDIRKALVEKDLIE 209 (312)
T ss_pred CCCC-------CCCHHCCCCCCCCCHHHHHHHHHHHHCCC----CCEEEEEECCCCCCCCCH---HHHHHHHHHHCCCEE
T ss_conf 2102-------72110368788874429999999985699----976999955823104650---889999999759769
Q ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC--CCCEE
Q ss_conf 8831767765578861699999468874348838997236776576404664420698999999999972102--54104
Q gi|254780836|r 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN--GKFSR 466 (674)
Q Consensus 389 aII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e--~e~sk 466 (674)
|||+||++|||+|||+||||||+|+|+ |+++|+|||||..|.+ .|+++|.|+++||++|+++|+++.+ .++|+
T Consensus 210 aVI~LP~~lF~~tgi~t~ilv~~k~k~--~~~~V~fida~~~~~~---~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~s~ 284 (312)
T pfam02384 210 AVIALPPNLFYNTGIPTCILFLTKNKA--RKGDVLFIDASNEFEK---KGRKLNPLTDEHIEKIVDTYGEWPEDVAGFAK 284 (312)
T ss_pred EEEECCCCCCCCCCCCEEEEEEECCCC--CCCCEEEEECCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999589775338998479999988988--9896899988854554---67778829999999999999753105587389
Q ss_pred EEECCC
Q ss_conf 744466
Q gi|254780836|r 467 MLDYRT 472 (674)
Q Consensus 467 i~~~~~ 472 (674)
+++.++
T Consensus 285 ~v~~~e 290 (312)
T pfam02384 285 VATLDE 290 (312)
T ss_pred EEEHHH
T ss_conf 963999
No 3
>TIGR00497 hsdM type I restriction-modification system, M subunit; InterPro: IPR004546 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements , , as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities , . The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognize asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the M subunit (HsdM) of type I restriction endonucleases such as EcoRI (3.1.21.3 from EC), which recognises the DNA sequence 5'-GAATTC. The M subunit (HsdM) functions in methylation of specific adenine residues, which is required for both restriction and modification activities , , . Methylation of specific residues prevents the host from digesting its own genome via its restriction enzymes. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0006306 DNA methylation.
Probab=100.00 E-value=0 Score=347.05 Aligned_cols=424 Identities=25% Similarity=0.448 Sum_probs=299.4
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHH-HHHHHCCCCCCCHHHHHH--------HCCC
Q ss_conf 8889999999998740688834308723054899989674123399999-999720246889678765--------3389
Q gi|254780836|r 8 AASLANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVR-EKYLAFGGSNIDLESFVK--------VAGY 78 (674)
Q Consensus 8 ~s~L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~-~~~~~~~~~~~~~~~~~~--------~~g~ 78 (674)
...+...+|.+|+.+||.++.++|+.|+|+.+|+|++..-+...-..-. .....+.-..+.++.+.. ....
T Consensus 2 ~~~~~~~~w~~~~~~~g~~dgwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 81 (516)
T TIGR00497 2 RNELEKKIWEIANDLRGSVDGWDFKQYVLGGLFYRFLSENLANYINDGERKNDPSFDYAKLPDDYIEKLPLGRKALLFTK 81 (516)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 42045688876665313335420367899999999886667765300210256554212133577776533344555442
Q ss_pred CCC-CCCCCCHHHH---HH----HHHHHHHHHHHH----------H-HCHHHHHHHHHCCHHHHHHHH-----HHCCHHH
Q ss_conf 610-3680368861---34----558999999997----------5-299989998717723577544-----4236289
Q gi|254780836|r 79 SFY-NTSEYSLSTL---GS----TNTRNNLESYIA----------S-FSDNAKAIFEDFDFSSTIARL-----EKAGLLY 134 (674)
Q Consensus 79 ~F~-n~s~~~~~~l---~~----~~~~~nl~~yi~----------g-fS~nv~dI~~~f~f~~~i~~L-----~~~~~L~ 134 (674)
.|| .++......+ .. ..+...+.+..+ + -..+++++|..|+.... +| .....|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~d~~~~~~--~~g~~~~~~~~~~~ 159 (516)
T TIGR00497 82 GFFLPPSRLFLNALKNACENKNNEDLNTTLRDIFDDIEKSTELGDGRSEENFKGLFKDLDVNEN--KLGSTLTNRTEKLK 159 (516)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH--HCCCHHHHHHHHHH
T ss_conf 1000068999999988751356311355688877665422014776421334334420342111--11411345688899
Q ss_pred HHHHHHCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCC
Q ss_conf 9998740245673337-611443899999999986227665753681799999999731784011013877640311766
Q gi|254780836|r 135 KICKNFSGIELHPDTV-PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPT 213 (674)
Q Consensus 135 ~vI~~F~~idL~p~~v-~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPa 213 (674)
.++..+....|..-.- .-+.+|++||+|+..++..+|+.+|+||||+++..|++.+.....+. +..+||||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~d~~gd~~~~~~~~~~~~~g~~gg~~~~p~~~~~~~~~~~~~~~~~--------~~~~~d~~ 231 (516)
T TIGR00497 160 ELLEAIGGLELGDFLKNGIDAFGDAYEFLLALYASNAGKSGGEFFTPQDVSELLAKIALGGKDT--------VDDVYDPC 231 (516)
T ss_pred HHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCH--------HHHHHHHC
T ss_conf 9987513300012433010010047899999875204656665446255898988764045200--------23444310
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 540468999999999853100533322550466667889999999898088753345666682347545799986-----
Q gi|254780836|r 214 CGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT----- 288 (674)
Q Consensus 214 CGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~----- 288 (674)
||+|.+|....+.+. .. .......||||+|..||.+|++||++|.++.. ..+|..||||..+.+.
T Consensus 232 cg~g~~~~~~~~~~g---~~--~~~~~~~~g~~~~~~~~~~c~~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~ 301 (516)
T TIGR00497 232 CGSGSLLLQFSKVLG---KD--KNSLKGYFGQEINLTTYNLCRLNLFLHDIDYA-----NFNIANGDTLLDPEWEKHYVN 301 (516)
T ss_pred CCCCHHHHHHHHHHC---CC--HHHHHHHCCCHHCCHHHHHHHHHHHHHHCCCC-----CCEECCCCCCCCCHHHHCCCC
T ss_conf 475136778787732---31--01122220210011034455554555312300-----100002310036201210012
Q ss_pred ---CCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCC-C-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CC
Q ss_conf ---64189998168567653100011123442266665357-7-774770659999999996146657880799973-89
Q gi|254780836|r 289 ---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP-G-LPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SS 362 (674)
Q Consensus 289 ---~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~-g-lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ng 362 (674)
...|+.+++||||+..|.++.+...- .+.||.+ | +.|.+.++++|.+|+++.+... |.+++|. ||
T Consensus 302 c~~~~~~~~~~~~pp~~~~w~gd~~~~~~-----~d~~~~~~g~~~p~~~~d~~~~~~~~~~~~~~----g~~~~~~~pg 372 (516)
T TIGR00497 302 CSDDEGFDAVVSNPPYSTKWAGDKNPNLV-----NDERFKPAGTLAPNNKADLAFTLHALYYLGNE----GTAAIVCFPG 372 (516)
T ss_pred CCCCCCCEEEECCCCCCEEECCCCCCCEE-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCC
T ss_conf 46777732455378742000466544200-----10102533222655113588888898873256----6423222142
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCC
Q ss_conf 71347764432689999998849468883176776557886169999946887434883899723677657640466442
Q gi|254780836|r 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRR 442 (674)
Q Consensus 363 s~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~ 442 (674)
.|++|++ |..||+++++.+.++|||+||.++|++|.|+|||+++.+++ .+++.++|||+++.|.+. .|++
T Consensus 373 -~~~~~~~---~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~d~~~~~d~~~~~~~~----~~~~ 442 (516)
T TIGR00497 373 -VLYRGGK---EAKIREYLVDENFVDCVIALPDNLFFGTSIATCILVLKKNK--DKDDPTLFIDGSNEFVKE----GKNN 442 (516)
T ss_pred -HHCCCCC---HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--CCCCCEEEEECCHHHHHC----CCCC
T ss_conf -1103750---35688776420134555430100110124555443321256--755635786162344430----1012
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CEEEEEC
Q ss_conf 069899999999997210254-1047444
Q gi|254780836|r 443 IINDDQRRQILDIYVSRENGK-FSRMLDY 470 (674)
Q Consensus 443 ~l~~~~i~~Iv~~y~~f~e~e-~ski~~~ 470 (674)
.+.+.++++|++.|...++.. +|+....
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (516)
T TIGR00497 443 KLKPKNREKILDCFNEKKEEKNFCKLAER 471 (516)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34523678899877545566777776544
No 4
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family; InterPro: IPR014329 Members of this entry are the m6-adenine DNA methyltransferase protein, or a fusion protein that also carries m5 cytosine methyltransferase activity of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A type II restriction endonuclease always accompanies a methyltransferase of this type from Alw26I/Eco31I/Esp3I(IPR014328 from INTERPRO) and by an adenine-specific modification methyltransferase. Members of this are unusual in that the regions of similarity to homologues outside this family are circularly permuted..
Probab=99.77 E-value=2.5e-17 Score=132.62 Aligned_cols=245 Identities=19% Similarity=0.219 Sum_probs=142.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCC--CCCCEEEECCCCCH
Q ss_conf 6657536817999999997317840110138776403117665404689999999998531005--33322550466667
Q gi|254780836|r 172 EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK--IPPILVPHGQELEP 249 (674)
Q Consensus 172 ~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~--~~~~~~lyGQEin~ 249 (674)
+..|.||||.+|...||.-+....+...++ .=...+|.|||||+|.|++.+..+..+.+.... ......+|=.++++
T Consensus 1 K~~G~yfT~~~~~~~m~~~l~~~~~~~~~~-nI~~~~~~DP~~G~G~Li~~~L~~~~~i~~~~~~i~~~~~~~~~~Di~~ 79 (603)
T TIGR02987 1 KAYGTYFTPLDLAKEMVKELVKEIDKNDKS-NIEKLKIIDPCCGDGRLIALLLKKFEEINLFKEQIEKVELNIYLADIDK 79 (603)
T ss_pred CCCCEEECCHHHHHHHHHHHHHHCCCCCCC-CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHEEEEECCCH
T ss_conf 984125276899999999998751765300-0415453357527649999999986643034023233111000231444
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCCC-------------CCCCCC----CEEEEEEECCCCC-CCCCCCHH
Q ss_conf 8899999998980887533456666-823475457-------------999866----4189998168567-65310001
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSK-NIQQGSTLS-------------KDLFTG----KRFHYCLSNPPFG-KKWEKDKD 310 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~-NI~~GdTL~-------------~d~~~~----~kFD~vlaNPPFg-~~Wk~~~~ 310 (674)
+.-.-+.++|=-.+......+.... ...+++++. ++.|++ +.||+|++||||+ +. .+.+
T Consensus 80 ~~L~~~~~~~~~~~k~~F~~~~~~~~~~~~~~~~~~~~~~~~~EYI~~~~~F~~EV~keGFD~~ItNPPy~~~K--~dk~ 157 (603)
T TIGR02987 80 TLLERASKLLSELAKLLFALEISIILTNSLSDVFLLIEEYKEKEYIKLEDVFGDEVKKEGFDIVITNPPYKNLK--PDKK 157 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCEEEEECCCCCCCC--CCCC
T ss_conf 79999999887876665423775100110234445455420102225450155320015741799778885544--4510
Q ss_pred HHH---HH-------HH---CCCCCC-CCCCCCCCC-------HH--HH-HHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 112---34-------42---266665-357777477-------06--59-999999996146657880799973897134
Q gi|254780836|r 311 AVE---KE-------HK---NGELGR-FGPGLPKIS-------DG--SM-LFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674)
Q Consensus 311 ~v~---~e-------~~---~~~~~R-f~~glP~~s-------dg--~~-lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674)
... .. .. .++..| |.+..|.+. .| .| .|...++.++- ..+|-++||+|.|-|
T Consensus 158 ~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~S~p~kKf~g~g~~~G~~~ysr~~~~~~~~~~---~~~G~v~i~~P~S~l- 233 (603)
T TIGR02987 158 ELSNLETLEKESYKDSLKELDDFLSRVFPYSDPRKKFAGVGTEKGILNYSRVGEEISLELV---KKNGLVSIVIPSSIL- 233 (603)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCC-
T ss_conf 0014682554445377641222233302421003443367866760679999999999873---459879996363010-
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCC--CCCCCCCCCEEEEEEE---CCCCCCCCCCEEEEE
Q ss_conf 77644326899999988494688831767--7655788616999994---688743488389972
Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLIEAIVALPT--DLFFRTNIATYLWILS---NRKTEERRGKVQLIN 426 (674)
Q Consensus 367 ~G~agsGEs~IRk~lie~d~ieaII~LP~--~lFynTgI~t~Iwil~---k~K~~~rkgkV~lID 426 (674)
||..| .+.|+||++|..|.+|=--|+ +||-+...|+++.+|+ +..+...+-.++..+
T Consensus 234 -~D~~~--~~LR~~~~~n~~I~~I~yf~e~aklF~~v~Qa~~~~~l~~~C~~~S~~~~~~~~~~~ 295 (603)
T TIGR02987 234 -ADKTS--ENLRKYILENSNINSINYFPEEAKLFGGVDQALTTILLRVKCDDESKEKKIELIVYD 295 (603)
T ss_pred -CCHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEE
T ss_conf -52346--788898761464231011012355557403658999985234622323540267740
No 5
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=99.49 E-value=3.1e-13 Score=105.82 Aligned_cols=96 Identities=16% Similarity=0.208 Sum_probs=69.9
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674)
Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674)
.+...|+++. .+....+|+||.||||++|++|...-. ....+|.|++++...+|+.|.-.
T Consensus 15 ~lAa~l~~la----------~~~~g~~vlDP~CGSGtilIEAa~~~~----------~~~~~G~Did~~~v~~A~~N~~~ 74 (171)
T pfam01170 15 TLARAMVNLA----------GWKPGDPLLDPFCGSGTILIEAALMGA----------NVALYGSDIDRRMVRGARINAEA 74 (171)
T ss_pred HHHHHHHHHH----------CCCCCCEEEECCCCCCHHHHHHHHHHC----------CCCCEEEECCHHHHHHHHHHHHH
T ss_conf 9999999985----------899999788689987899999999613----------58953675879999999999998
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 0887533456666823475457999866418999816856765
Q gi|254780836|r 262 RRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 262 ~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
.|.... -.+..+|...-+ ++...||.|++|||||..
T Consensus 75 ~g~~~~------i~~~~~D~~~l~-~~~~~~d~Iv~nPPYG~r 110 (171)
T pfam01170 75 AGVGDK------IEFVQADAADLP-LLNGSVDTIVTDPPYGIR 110 (171)
T ss_pred HCCCCC------EEEEECCHHHCC-CCCCCCEEEEECCCCCCC
T ss_conf 289984------699976665387-987883189988982011
No 6
>pfam12161 HsdM_N HsdM N-terminal domain. This domain is found at the N-terminus of the methylase subunit of Type I DNA methyltransferases. This domain family is found in bacteria and archaea, and is typically between 123 and 138 amino acids in length. The family is found in association with pfam02384. Mutations in this region of EcoKI methyltransferase abolish the normally strong preference of this system for methylating hemimethylated substrate. The structure of this domain has been shown to be all alpha-helical.
Probab=99.42 E-value=7.6e-14 Score=109.82 Aligned_cols=85 Identities=34% Similarity=0.589 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99999999987406888343087230548999896741233999999997202468896787653389610368036886
Q gi|254780836|r 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 (674)
Q Consensus 11 L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~F~n~s~~~~~~ 90 (674)
|+|+||++||.|||++++++|++|||||+|||| +++|+.
T Consensus 1 l~~~lw~~ad~LRg~~~~~~y~~~il~LlFlK~-----------------------------------------~~~w~~ 39 (92)
T pfam12161 1 LESKLWNIADILRGDVDASEYKEYILPLLFLKR-----------------------------------------EYRWSN 39 (92)
T ss_pred CHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEC-----------------------------------------CCCHHH
T ss_conf 917999999998087997880161210121024-----------------------------------------880899
Q ss_pred HH----HHHHHHHHHHHHHHHCHH---HHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 13----455899999999752999---89998717723577544423628999987
Q gi|254780836|r 91 LG----STNTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGLLYKICKN 139 (674)
Q Consensus 91 l~----~~~~~~nl~~yi~gfS~n---v~dI~~~f~f~~~i~~L~~~~~L~~vI~~ 139 (674)
+. ++++..++.+|+.++++. ++++|.+++|. .++.++++|..||++
T Consensus 40 l~~~~~~~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~L~~vi~~ 92 (92)
T pfam12161 40 LKANDDGDELGENLNDALPGLEELNPDLKGIFFDADFN---TKLEKPDLLKKVIEK 92 (92)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCC---CCCCCHHHHHHHHCC
T ss_conf 98501589689999999999998787674412556587---755782689988509
No 7
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.9e-11 Score=91.48 Aligned_cols=165 Identities=15% Similarity=0.203 Sum_probs=102.3
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
.|..++|.||+|- ....+..|+||.|||||||++|-- . ..+.+|.|+......-|++|
T Consensus 181 ~~P~lAR~mVNLa----------~v~~G~~vlDPFcGTGgiLiEagl--------~----G~~viG~Did~~mv~gak~N 238 (347)
T COG1041 181 MDPRLARAMVNLA----------RVKRGELVLDPFCGTGGILIEAGL--------M----GARVIGSDIDERMVRGAKIN 238 (347)
T ss_pred CCHHHHHHHHHHH----------CCCCCCEEECCCCCCCHHHHHHHH--------C----CCEEEECCHHHHHHHHHHHH
T ss_conf 5989999987774----------164698764576783488883664--------2----75676032379998556641
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89808875334566668234754579998664189998168567653100011123442266665357777477065999
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF 338 (674)
+==-++.... -...+|.-.-| +++.+||-|++.||||.+=+.....+..-+ .-|
T Consensus 239 l~~y~i~~~~------~~~~~Da~~lp-l~~~~vdaIatDPPYGrst~~~~~~l~~Ly-------------------~~~ 292 (347)
T COG1041 239 LEYYGIEDYP------VLKVLDATNLP-LRDNSVDAIATDPPYGRSTKIKGEGLDELY-------------------EEA 292 (347)
T ss_pred HHHHCCCCEE------EEEECCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCHHHHH-------------------HHH
T ss_conf 5662767616------88730221277-887742358846998710024555289999-------------------999
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 999999614665788079997389713477644326899999988494-68883176776557886169999946
Q gi|254780836|r 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYLWILSN 412 (674)
Q Consensus 339 lqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~Iwil~k 412 (674)
++-+-+-|+ .||+++.+.|- ..+.++++.++ +...+. ++-+-++.-+|.|+.+
T Consensus 293 le~~~evLk----~gG~~vf~~p~-------------~~~~~~~~~~f~v~~~~~----~~~H~sLtR~i~v~~~ 346 (347)
T COG1041 293 LESASEVLK----PGGRIVFAAPR-------------DPRHELEELGFKVLGRFT----MRVHGSLTRVIYVVRK 346 (347)
T ss_pred HHHHHHHHH----CCCEEEEECCC-------------CCHHHHHHCCCEEEEEEE----EEECCCEEEEEEEEEC
T ss_conf 999998730----48489996178-------------605567643965999997----7641746899999862
No 8
>COG4889 Predicted helicase [General function prediction only]
Probab=99.27 E-value=5.9e-10 Score=84.45 Aligned_cols=262 Identities=16% Similarity=0.203 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCC-----CCCCCEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 43899999999986227665753681799999999731784011013-----8776403117665404689999999998
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKE-----SPGMIRTLYDPTCGTGGFLTDAMNHVAD 229 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~-----~p~~~~tIyDPaCGTGGmL~~a~~~i~~ 229 (674)
+-.+||-+-+.-...-.+.-|-.|||-+||.++++-. +++++. -.....+|+||..|||.|.+....-+-.
T Consensus 794 Ik~LY~~FFk~aFKkqsE~LGIVyTPiEVVDFIlra~----d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs 869 (1518)
T COG4889 794 IKNLYNTFFKEAFKKQSEKLGIVYTPIEVVDFILRAT----DDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALIS 869 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHC----CHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 9999999999999876764150431466766788851----138898718886657706634778740789999998658
Q ss_pred HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCCCC---CC-----CCC----------C
Q ss_conf 53100533322550466667889999999898--0887533456666823475457---99-----986----------6
Q gi|254780836|r 230 CGSHHKIPPILVPHGQELEPETHAVCVAGMLI--RRLESDPRRDLSKNIQQGSTLS---KD-----LFT----------G 289 (674)
Q Consensus 230 ~~~~~~~~~~~~lyGQEin~~tyaIak~nMli--~g~~~d~~~~~~~NI~~GdTL~---~d-----~~~----------~ 289 (674)
... ...+-...|+.-|+---+|-||..|.-- ++.+.+. ....+|.++|||- +| -|+ .
T Consensus 870 ~ed-l~rKf~~eLhA~eIvLLsYYIAaiNIe~t~~~~~gd~--~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ 946 (1518)
T COG4889 870 DED-LKRKFQKELHAFEIVLLSYYIAAINIEQTAQNRDGDL--KNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKE 946 (1518)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCEECCHHHHHCCCCCCCCCCCCCHHHHHHHCC
T ss_conf 899-9999985530778799999999862798765414871--1378715402354422354556545753789986137
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHC-CCCCCC--CCC--CCCCCHHHH--HHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 41899981685676531000111234422-666653--577--774770659--99999999614665788079997389
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKN-GELGRF--GPG--LPKISDGSM--LFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~-~~~~Rf--~~g--lP~~sdg~~--lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
-...+|+.||||++.-+...+ -+..-.. .-++|- .+| -...+..++ -+|+ .+..-...-...|.+|.|.||
T Consensus 947 ipI~VIiGNPPYS~gqks~nd-nn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyir-a~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 947 IPIRVIIGNPPYSAGQKSEND-NNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIR-AIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred CCEEEEECCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHCCCHHHCCCCHHHHHHH-HHHHHHHHCCCCCEEEEEECC
T ss_conf 854999179987656567676-554556622788999987202212023425899999-999876531568559999569
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC--------------CCCCC-CCCCCEEEEEEECCCCCCCCCCEEEEEC
Q ss_conf 71347764432689999998849468883176--------------77655-7886169999946887434883899723
Q gi|254780836|r 363 SPLFNGRAGSGESEIRRWLLENDLIEAIVALP--------------TDLFF-RTNIATYLWILSNRKTEERRGKVQLINA 427 (674)
Q Consensus 363 s~LF~G~agsGEs~IRk~lie~d~ieaII~LP--------------~~lFy-nTgI~t~Iwil~k~K~~~rkgkV~lIDA 427 (674)
|-. -|.+.-| .|+-|.+.-----|.-|- .|+|- +++..+.|.++-|++... .+.|+.-|-
T Consensus 1025 gfI-DgnsaDG---~R~sla~dfs~iYvlNLrGn~Rt~ge~sk~EGg~iFd~gsrvtvaIi~~vKd~~~~-~~~I~Y~di 1099 (1518)
T COG4889 1025 GFI-DGNSADG---FRKSLAQDFSHIYVLNLRGNQRTSGELSKKEGGNIFDSGSRVTVAIIFFVKDKDTP-GCRIFYYDI 1099 (1518)
T ss_pred CEE-CCCCCHH---HHHHHHHHHHHHEEEECCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCC-CCEEEEEEH
T ss_conf 530-3754117---89999987555457743477554304667507860046764159999997268899-975899516
Q ss_pred HHH
Q ss_conf 677
Q gi|254780836|r 428 TDL 430 (674)
Q Consensus 428 s~~ 430 (674)
-+.
T Consensus 1100 gdy 1102 (1518)
T COG4889 1100 GDY 1102 (1518)
T ss_pred HHH
T ss_conf 556
No 9
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.21 E-value=4.1e-11 Score=91.98 Aligned_cols=87 Identities=23% Similarity=0.397 Sum_probs=60.6
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHH------------------------------HCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 403117665404689999999998531------------------------------00533322550466667889999
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGS------------------------------HHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~------------------------------~~~~~~~~~lyGQEin~~tyaIa 255 (674)
..+++||.||||.+|++|.-.-.+..+ ....... .+||-|+++....+|
T Consensus 192 ~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~-~~~G~Did~r~i~~A 270 (381)
T COG0116 192 DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP-IIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCHHHHHHH
T ss_conf 9834168877347999999734456876332200455432138889999999999865147666-589874898999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCC----CCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 999898088753345666682347----5457999866418999816856765
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQG----STLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~G----dTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
|+|-.--|+... |.+- ..|.++. +.+|+|++|||||..
T Consensus 271 k~NA~~AGv~d~--------I~f~~~d~~~l~~~~---~~~gvvI~NPPYGeR 312 (381)
T COG0116 271 KANARAAGVGDL--------IEFKQADATDLKEPL---EEYGVVISNPPYGER 312 (381)
T ss_pred HHHHHHCCCCCE--------EEEEECCHHHCCCCC---CCCCEEEECCCCHHH
T ss_conf 998997698832--------899974432166876---669989958983011
No 10
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=99.04 E-value=8.6e-10 Score=83.38 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
-+-||.=..++|+.+... +.. ...+|.|-|||||-..++..... ....++|.|+++.+..+|+
T Consensus 66 VLIPRpETE~Lve~~l~~----~~~---~~~~ilDlgtGSG~I~i~la~~~----------~~~~v~~~Dis~~Al~~A~ 128 (251)
T TIGR03534 66 VLIPRPDTEELVEAALER----LKK---GPLKVLDLGTGSGAIALALAKER----------PDARVTAVDISPEALAVAR 128 (251)
T ss_pred EEEECCCHHHHHHHHHHH----HCC---CCCEEEEECCCHHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf 786488339999999997----314---89869995567169999999967----------9978999989879999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 998980887533456666823475457999866418999816856765--310001112344226666535777747706
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674)
.|.-.+|... -++..+|-++. ++..+||+|+|||||=-. |..-...|.. +.++- .|=...||
T Consensus 129 ~N~~~~~~~~-------v~~~~~d~~~~--~~~~~fDlIvsNPPYI~~~e~~~l~~eV~~-----~EP~~--AL~gg~dG 192 (251)
T TIGR03534 129 KNAKRLGLEN-------VRFLKSDWFEP--LPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----HEPKL--ALFAGEDG 192 (251)
T ss_pred HHHHHCCCCE-------EEEEECCHHHC--CCCCCCCEEEECCCCCCHHHHHHCCCHHCC-----CCHHH--HHCCCCCH
T ss_conf 9999809982-------68651314321--568986689978998874566632860102-----67299--97179846
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 59999999996146657880799973897134776443268999999884946
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674)
+.|...++...+...+.||.+.+=+ + .++ ...+++.+-.+++-
T Consensus 193 -l~~~~~ii~~a~~~L~~~G~l~~Ei--g------~~q-~~~v~~l~~~~gf~ 235 (251)
T TIGR03534 193 -LDFYRRIIAQAPRYLKPGGWLLLEI--G------YDQ-GEAVRALFEAAGFA 235 (251)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEE--C------HHH-HHHHHHHHHHCCCC
T ss_conf -9999999999998536798899996--8------378-99999999968997
No 11
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.96 E-value=3.8e-09 Score=79.18 Aligned_cols=151 Identities=17% Similarity=0.300 Sum_probs=89.3
Q ss_pred CCCHH-HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 36817-99999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 177 FMTPR-DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 177 ffTPR-~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
-.-|| +--.|+++.+. +.. .+....+|.|-|||||-.-+...... + ...+.|.|+++.+.++|
T Consensus 98 VLIPR~~teeLv~~~l~----~~~--~~~~~~~iLDlGtGSG~Iai~la~~~----p------~~~v~a~DiS~~Al~~A 161 (284)
T TIGR03533 98 VLIPRSPIAELIEDGFA----PWL--EPEPVKRILDLCTGSGCIAIACAYAF----P------EAEVDAVDISPDALAVA 161 (284)
T ss_pred CEECCCCCHHHHHHHHH----HHH--CCCCCCEEEEECCCCHHHHHHHHHHC----C------CCEEEEEECCHHHHHHH
T ss_conf 54389971999999999----984--23677715552168079999999878----9------98799998999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCH
Q ss_conf 999898088753345666682347545799986641899981685676531000111234422666653577--774770
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sd 333 (674)
+.|.-.+|+... -++..||-++. .++.+||+|+|||||=-. .+...+..+. |+.+- |-.-.|
T Consensus 162 ~~N~~~~~l~~r------v~~~~~D~~~~--~~~~~fDlIVSNPPYI~~--~e~~~l~~ev------~~EP~~AL~gG~d 225 (284)
T TIGR03533 162 EINIERHGLEDR------VTLIQSDLFAA--LPGRKYDLIVSNPPYVDA--EDMADLPAEY------HHEPELALASGED 225 (284)
T ss_pred HHHHHHHCCCCC------EEEEECCHHHH--CCCCCCCEEEECCCCCCH--HHHHHCCHHH------CCCCHHHHCCCCC
T ss_conf 999986085433------68883514331--457777879977997884--6554497641------1586998758955
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 659999999996146657880799973
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
| |.|+..++.......+.||.+++=+
T Consensus 226 G-L~~yr~Ii~~a~~~L~pgG~l~lEi 251 (284)
T TIGR03533 226 G-LDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred H-HHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 8-7999999998898425697899997
No 12
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.95 E-value=1e-08 Score=76.42 Aligned_cols=110 Identities=22% Similarity=0.261 Sum_probs=75.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.+|.|-+||||-.-+.+.. ..+ ...+++.|+|+....+|+.|+-.+++.. ..+..+|.+..
T Consensus 33 g~vLDlGcG~G~i~~~la~----~~p------~~~v~~vDi~~~Al~~a~~N~~~n~l~~-------v~v~~~D~~~~-- 93 (170)
T pfam05175 33 GKVLDLGCGYGVLGAALAK----RSP------DLEVTMVDINARALESARANLAANGLEN-------GEVFWSDLYSA-- 93 (170)
T ss_pred CCEEEECCCCCHHHHHHHH----HCC------CCEEEECHHHHHHHHHHHHHHHHHCCCE-------EEEEECCCCCC--
T ss_conf 9499977648298999999----789------8679851544999999999999809984-------89997446665--
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
.+..+||+|++||||-.. + +.+ .+--..|++....+|+| ||++-+|.|.
T Consensus 94 ~~~~~fD~IvsNPP~h~g--~---------~~~------------~~~~~~~i~~A~~~L~p----gG~l~~V~n~ 142 (170)
T pfam05175 94 VEPGKFDLIISNPPFHAG--K---------ATD------------YDVAQRFIAGAARHLKP----GGELWIVANR 142 (170)
T ss_pred CCCCCEEEEEECCCCCCC--C---------CCC------------HHHHHHHHHHHHHHCCC----CCEEEEEEEC
T ss_conf 778866089989772114--2---------032------------89999999999996164----9799999989
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.92 E-value=9.7e-09 Score=76.52 Aligned_cols=150 Identities=17% Similarity=0.259 Sum_probs=89.1
Q ss_pred CCCHH-HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 36817-99999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 177 FMTPR-DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 177 ffTPR-~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
-.-|| +...|+++.+. ..+. . .....|.|-|||||-..+...... + ...+++.|+++...++|
T Consensus 110 VLIPRpp~~ELi~~~l~----~~~~-~-~~~~rilDlGtGSG~Iaisla~~~----p------~~~v~a~Dis~~AL~vA 173 (307)
T PRK11805 110 VLVPRSPIAELIEDGFA----PWLE-D-EQPTRILDLCTGSGCIAIACAYAF----P------DAEVDAVDISPDALAVA 173 (307)
T ss_pred EECCCCCCHHHHHHHHH----HHHC-C-CCCCEEEEECCCHHHHHHHHHHHC----C------CCEEEEEECCHHHHHHH
T ss_conf 01589984999999999----9733-5-788727774278279999999878----9------98899985899999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCH
Q ss_conf 999898088753345666682347545799986641899981685676531000111234422666653577--774770
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISD 333 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sd 333 (674)
+.|.-.+|.... -++..||-+.. .++.+||+|+|||||=-. .+...+..|. |+.+- |-.-.|
T Consensus 174 ~~N~~~~~l~~r------v~~~~~D~~~~--l~~~~fDlIvSNPPYI~~--~~~~~L~~ev------~~EP~~AL~gG~D 237 (307)
T PRK11805 174 EINIERHGLEDR------VTLIQSDLFAA--LPGRRYDLIVSNPPYVDA--EDMADLPAEY------RHEPELALAAGDD 237 (307)
T ss_pred HHHHHHHCCCCC------EEEEECCHHHC--CCCCCCCEEEECCCCCCH--HHHHHCCHHH------CCCCHHHHCCCCC
T ss_conf 999998388773------89980402212--688750779967997885--6563397753------1587888768924
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 65999999999614665788079997
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIV 359 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV 359 (674)
| |-|+..++..-....+.||..++=
T Consensus 238 G-Ld~~r~i~~~A~~~L~pgG~L~~E 262 (307)
T PRK11805 238 G-LDLVRRILAEAADYLTEDGVLVCE 262 (307)
T ss_pred H-HHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8-899999999889744769689999
No 14
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.86 E-value=4.8e-08 Score=71.96 Aligned_cols=148 Identities=14% Similarity=0.247 Sum_probs=89.8
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
...+|.|-|||||-..++-.... + ...+.|.++++.+.++|+.|...+++... -.+..+|-++.
T Consensus 135 ~~~~ILDLGTGSGcIaISLa~e~----p------~a~v~avDIS~~AL~vAk~Na~~~~v~~r------i~fi~sdwfe~ 198 (503)
T PRK01544 135 KFLNILELGTGSGCIAISLLCEL----P------NANVIATDISLDAIEVAKSNAIKYEVTDR------IQIIHSNWFEN 198 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCHHC
T ss_conf 57727884666799999999867----8------99899998989999999999998088201------79996553101
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 998664189998168567653100011123442266665357--777477065999999999614665788079997389
Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGP--GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~--glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
+.+.+||.|+|||||=.. .+...+..+-. +|.| .|-...|| |.|...++...+...+.||++.+=.
T Consensus 199 --l~~~kFDlIVSNPPYI~~--~e~~~L~~eV~-----~yEP~lAL~ggeDG-L~~Yr~Ia~~a~~~Lkp~G~l~lEI-- 266 (503)
T PRK01544 199 --IGKQKFDFIVSNPPYISH--SEKSEMAIETI-----NYEPSIALFAEEDG-LQAYFIIAENAKQFLKPNGKIILEI-- 266 (503)
T ss_pred --CCCCCCCEEEECCCCCCH--HHHHHCCHHHH-----CCCCHHHHCCCCCC-HHHHHHHHHHHHHHCCCCCEEEEEE--
T ss_conf --588872479838998875--66665276653-----16937886488762-8999999998898528898899997--
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 7134776443268999999884946
Q gi|254780836|r 363 SPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 363 s~LF~G~agsGEs~IRk~lie~d~i 387 (674)
| -.++| .+.+-++++++-
T Consensus 267 -----G-y~Q~e-~V~~IF~~~gy~ 284 (503)
T PRK01544 267 -----G-FKQAE-AVTQIFLDHGYN 284 (503)
T ss_pred -----C-CCHHH-HHHHHHHHCCCC
T ss_conf -----8-78689-999999965943
No 15
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=3.6e-08 Score=72.79 Aligned_cols=168 Identities=20% Similarity=0.242 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
-+-||+=..++|+.+... +... ..+|.|-|||||-..++..... ....++|.|++++..++|+
T Consensus 88 VLIPRPETE~LVe~~l~~----~~~~---~~~ilDlgtGSGcI~isLa~~~----------p~~~v~a~DiS~~Al~~A~ 150 (277)
T PRK09328 88 TLIPRPDTECLVEQALAR----LPEQ---PCRILDLGTGTGAIALALASER----------PDCEVTAVDRMPDAVALAQ 150 (277)
T ss_pred EEEECCCHHHHHHHHHHH----CCCC---CCEEEEECCCHHHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf 364088179999999996----4537---8818995455699999999867----------7989999648999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC--CCCCCHH
Q ss_conf 99898088753345666682347545799986641899981685676531000111234422666653577--7747706
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG--LPKISDG 334 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g--lP~~sdg 334 (674)
.|.--+|.+. -++..+|-+.. ..+.+||+|+|||||=-. .+...... .-||.+- |-...||
T Consensus 151 ~Na~~~~l~~-------v~~~~~d~~~~--~~~~~fDlIVSNPPYI~~--~~~~~~~~------~v~~EP~~AL~gg~dG 213 (277)
T PRK09328 151 RNAQHLAIKN-------VRILQSDWFSA--LSGQQFAMIVSNPPYIDA--QDPHLQQG------DVRFEPLSALVAADNG 213 (277)
T ss_pred HHHHHCCCCE-------EEEEECCCHHH--CCCCCCCEEEECCCCCCC--CHHHHCCH------HCCCCCHHHHHCCCCH
T ss_conf 9999809886-------99994475211--378777889978998770--00343824------2166838998179758
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 599999999961466578807999738971347764432689999998849468
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674)
+.|+..++.......+.||.+.+=+ | .+++ ..+.+.+-.+++.+
T Consensus 214 -l~~~~~ii~~a~~~L~~~G~l~~Ei-g-------~~Q~-~~v~~l~~~~gf~~ 257 (277)
T PRK09328 214 -MADLAHIIEQARQYLVPGGWLLLEH-G-------WQQG-EAVRQLFIRAGYSD 257 (277)
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEE-C-------HHHH-HHHHHHHHHCCCCE
T ss_conf -9999999999998446698999996-8-------1589-99999999679970
No 16
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.79 E-value=2e-06 Score=61.35 Aligned_cols=187 Identities=19% Similarity=0.356 Sum_probs=111.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
-+-||.=..++|+.+.. .+...+. ...+.|-|||||-..+...... ....++|.|+++.+..+|+
T Consensus 86 VLIPRpETE~LVe~~l~----~~~~~~~-~~~~lDlGtGSG~I~isla~~~----------p~~~v~avDiS~~Al~~A~ 150 (285)
T PRK09329 86 VLIPRQETEILVEKIIG----YLQSHKE-IQTFYDVCCGSGCIGLAIKKHC----------PHVHVVLSDICPQALAVAK 150 (285)
T ss_pred CEECCCHHHHHHHHHHH----HHHHCCC-CCEEEEECCCHHHHHHHHHHHC----------CCCEEEHHHCCHHHHHHHH
T ss_conf 42059609999999999----9861877-7778884541799999999858----------9865880337699999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC--CCCCCHHHHHHHHHCCCCCCCCC--CCCCCC
Q ss_conf 99898088753345666682347545799986641899981685676--53100011123442266665357--777477
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK--KWEKDKDAVEKEHKNGELGRFGP--GLPKIS 332 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~--~Wk~~~~~v~~e~~~~~~~Rf~~--glP~~s 332 (674)
.|.-.++... ++..||-+.. + ..+||+|+|||||=- +|..-...|.. |.+ .|-.-.
T Consensus 151 ~Na~~~~~~v--------~~~~~dl~~~--~-~~~~DlIvSNPPYI~~~e~~~l~~eV~~---------~EP~~AL~gg~ 210 (285)
T PRK09329 151 SNAKSNGLDV--------DFLLGDLFAP--F-SRPADAFVCNPPYLSFKEFFHVDPEVRC---------HEPWKALVGGS 210 (285)
T ss_pred HHHHHCCCCE--------EEEECCHHHH--H-CCCCCEEEECCCCCCHHHHHHCCHHHHH---------CCCHHHHHCCC
T ss_conf 9999729947--------9997630033--3-4767889989998884445449875543---------67099884797
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEC
Q ss_conf 06599999999961466578807999738971347764432689999998849468883176776557886169999946
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSN 412 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k 412 (674)
|| |.|+..++.........||.+.+=+ | .+++ ..+++.+-++++-..|+ .++ +|++-++ ++.|
T Consensus 211 dG-l~~~r~i~~~a~~~L~~~G~l~~Ei-g-------~~Q~-~~v~~l~~~~g~~~~v~---kDl---~G~~R~l-~~~~ 273 (285)
T PRK09329 211 SG-LEFYQRIAQELPKILVPGGVGWLEI-G-------SSQG-ESVKKIFAKHGISGRVL---QDL---AGLDRFF-FLEN 273 (285)
T ss_pred CH-HHHHHHHHHHHHHHCCCCCEEEEEE-C-------CHHH-HHHHHHHHHCCCCCEEE---ECC---CCCCCEE-EEEE
T ss_conf 38-9999999999999600498899996-8-------5489-99999999669964281---179---9995389-9983
Q ss_pred CCC
Q ss_conf 887
Q gi|254780836|r 413 RKT 415 (674)
Q Consensus 413 ~K~ 415 (674)
..+
T Consensus 274 ~~~ 276 (285)
T PRK09329 274 QAS 276 (285)
T ss_pred CCC
T ss_conf 688
No 17
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.3e-07 Score=67.54 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 53681799999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
.-|-||+=..++++.+. ..+...+. +|+|-|||||-.=+...... ....++|-|+|+...++|
T Consensus 88 ~vliPr~dTe~Lve~~l----~~~~~~~~---~ilDlGTGSG~iai~la~~~----------~~~~V~a~Dis~~Al~~A 150 (280)
T COG2890 88 GVLIPRPDTELLVEAAL----ALLLQLDK---RILDLGTGSGAIAIALAKEG----------PDAEVIAVDISPDALALA 150 (280)
T ss_pred CCCCCCCCHHHHHHHHH----HHHHCCCC---CEEEECCCCCHHHHHHHHHC----------CCCEEEEEECCHHHHHHH
T ss_conf 86688976799999999----75111589---18996588319999999618----------988799998999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC--CCCH
Q ss_conf 99989808875334566668234754579998664189998168567653100011123442266665357777--4770
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP--KISD 333 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP--~~sd 333 (674)
+.|.-.+|.. + -....+|-+ +. ..+ +||+|++||||=-. + +.. .....-++.+-.. .-.|
T Consensus 151 ~~Na~~~~l~-~------~~~~~~dlf-~~-~~~-~fDlIVsNPPYip~-~-~~~------~~~~~~~~EP~~Al~~g~d 212 (280)
T COG2890 151 RENAERNGLV-R------VLVVQSDLF-EP-LRG-KFDLIVSNPPYIPA-E-DPE------LLPEVVRYEPLLALVGGGD 212 (280)
T ss_pred HHHHHHHCCC-C------EEEEECCHH-HC-CCC-CCCEEEECCCCCCC-C-CCC------CCCCCCCCCHHHHHHCCCC
T ss_conf 9999982897-4------798740033-34-688-85779968998888-5-211------3742135897998724877
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 65999999999614665788079997389713477644326899999988494
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674)
| +.++.+++.........||.+++-. |. ++ ...+++.+.+.+.
T Consensus 213 G-l~~~~~i~~~a~~~l~~~g~l~le~-g~-------~q-~~~v~~~~~~~~~ 255 (280)
T COG2890 213 G-LEVYRRILGEAPDILKPGGVLILEI-GL-------TQ-GEAVKALFEDTGF 255 (280)
T ss_pred H-HHHHHHHHHHHHHHCCCCCEEEEEE-CC-------CC-HHHHHHHHHHCCC
T ss_conf 7-8999999998998728682899997-69-------84-8999999997498
No 18
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.67 E-value=6.5e-08 Score=71.13 Aligned_cols=92 Identities=22% Similarity=0.319 Sum_probs=60.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHH-------------------------C----C---CCCCEEEECCCCCHHHHHHH
Q ss_conf 31176654046899999999985310-------------------------0----5---33322550466667889999
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSH-------------------------H----K---IPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~-------------------------~----~---~~~~~~lyGQEin~~tyaIa 255 (674)
..+||.||||.+|++|.-...+..+. + . ......+||.++++.+..+|
T Consensus 197 pLvDPMCGSGTllIEAAliA~~iAPGl~R~~fgF~~W~~~d~~lW~~l~~eA~~r~~~~~~~~~~~i~G~D~D~~ai~~A 276 (716)
T PRK11783 197 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSAWLGHDEALWQELLEEAQERARAGLAECSPKFYGSDIDPRVIQAA 276 (716)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHH
T ss_conf 13446668437899999998477988654545641156889999999999999865422346887189995998999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 99989808875334566668234754--5799986641899981685676531
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKKWE 306 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~Wk 306 (674)
+.|.---|+.... .+..+|- +..+... ..--+|++|||||...+
T Consensus 277 r~Na~~AGv~~~I------~f~~~d~~~l~~p~~~-~~~Gliv~NPPYGERLg 322 (716)
T PRK11783 277 RRNARRAGVEELI------TFEVKDVADLKNPLPK-GPTGLVISNPPYGERLG 322 (716)
T ss_pred HHHHHHCCCCCCC------EEEECCHHHCCCCCCC-CCCCEEEECCCHHCCCC
T ss_conf 9999981998862------9995678985798777-89828996785220136
No 19
>KOG2671 consensus
Probab=98.65 E-value=1.1e-07 Score=69.56 Aligned_cols=173 Identities=21% Similarity=0.280 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 43899999999986227665753681799999999731784011013877640311766540468999999999853100
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~ 234 (674)
+|.-=-+||.+|.--.-.=-|--=--.+.+-+|+++... .||.+ ||||..||||+|+.|..+-
T Consensus 168 ig~g~R~li~~y~LK~R~yiGnTSmDAeLSli~AN~Amv--------~pGdi--vyDPFVGTGslLvsaa~FG------- 230 (421)
T KOG2671 168 IGEGQRELIEKYDLKKRCYIGNTSMDAELSLIMANQAMV--------KPGDI--VYDPFVGTGSLLVSAAHFG------- 230 (421)
T ss_pred HCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCC--------CCCCE--EECCCCCCCCEEEEHHHHC-------
T ss_conf 122447676540611253237766555678887555306--------79988--7447656674266622306-------
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CC------CCCCCC-----CCCCCEEEEEEECCCCC
Q ss_conf 5333225504666678899999998980887533456666823-47------545799-----98664189998168567
Q gi|254780836|r 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ-QG------STLSKD-----LFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~-~G------dTL~~d-----~~~~~kFD~vlaNPPFg 302 (674)
-.++|-||+-.+.. + -+|.+... .+|.+ .| |+|+.| ......||.|++.||||
T Consensus 231 -----a~viGtDIDyr~vr---a---grg~~~si----~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fDaIvcDPPYG 295 (421)
T KOG2671 231 -----AYVIGTDIDYRTVR---A---GRGEDESI----KANFKQYGSSSQFLDVLTADFSNPPLRSNLKFDAIVCDPPYG 295 (421)
T ss_pred -----CEEECCCCCHHEEE---C---CCCCCCCH----HHHHHHHCCCCHHHHEEEECCCCCCHHHCCEEEEEEECCCCC
T ss_conf -----35641245312011---3---45777426----676877477532032045105676301032333787279811
Q ss_pred CCCCCCHHHHHHHHH--CCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECC
Q ss_conf 653100011123442--26666535777747706599999999961-466578807999738
Q gi|254780836|r 303 KKWEKDKDAVEKEHK--NGELGRFGPGLPKISDGSMLFLMHLANKL-ELPPNGGGRAAIVLS 361 (674)
Q Consensus 303 ~~Wk~~~~~v~~e~~--~~~~~Rf~~glP~~sdg~~lFlqh~i~kl-k~~~~~ggr~aIV~n 361 (674)
+.=+. ++...+.-. .+.+.| +.-.|..+--++.=+.|-+-.+ .+....|||++.-+|
T Consensus 296 VRe~~-rk~~~k~~~r~~~~~~~-~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671 296 VREGA-RKTGKKKSVRTTEESSR-GDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred HHHHH-HHHCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 45666-65414576557521243-35577644667999975088763766302855898347
No 20
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.42 E-value=1.4e-06 Score=62.35 Aligned_cols=124 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 4031176654046899999999985310053332255046666788999999989808875334566668234754579-
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK- 284 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~- 284 (674)
..+|.|.+||+|..-.... .+.. ...+.|.|+.++.+.+|.-|.-+.+.... -+|..+|-..-
T Consensus 45 ~~~IlDlGaG~G~l~L~la---------~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~r------i~v~~~Di~~~~ 108 (248)
T COG4123 45 KGRILDLGAGNGALGLLLA---------QRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEER------IQVIEADIKEFL 108 (248)
T ss_pred CCEEEEECCCCCHHHHHHH---------CCCC-CCCEEEEEECHHHHHHHHHHHHHCCCHHH------EEEEHHHHHHHH
T ss_conf 8769883689468999974---------5587-78079998179999999998861861340------167643088765
Q ss_pred CCCCCCEEEEEEECCCCCCCCCC-CHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 99866418999816856765310-00111234422666653577774770659-9999999961466578807999738
Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEK-DKDAVEKEHKNGELGRFGPGLPKISDGSM-LFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~-~~~~v~~e~~~~~~~Rf~~glP~~sdg~~-lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
..+...+||+|++||||-..=+. ..+.... -.|+-.. +++ -|++-.-+-|| .||++++|++
T Consensus 109 ~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~------~Ar~e~~------~~le~~i~~a~~~lk----~~G~l~~V~r 171 (248)
T COG4123 109 KALVFASFDLIICNPPYFKQGSRLNENPLRA------IARHEIT------LDLEDLIRAAAKLLK----PGGRLAFVHR 171 (248)
T ss_pred HCCCCCCCCEEEECCCCCCCCCCCCCCHHHH------HHHHHHC------CCHHHHHHHHHHHCC----CCCEEEEEEC
T ss_conf 4236565478995989878753348674665------5663222------889999999999746----7978999955
No 21
>pfam07669 Eco57I Eco57I restriction endonuclease. Homologues of the Escherichia coli Eco57I restriction endonuclease are found in several phylogenetically diverse bacteria.
Probab=98.42 E-value=2.9e-06 Score=60.38 Aligned_cols=103 Identities=21% Similarity=0.380 Sum_probs=68.0
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 41899981685676531000111234422666653577774770659999999996146657880799973897134776
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGR 369 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~ 369 (674)
.+||+|+.||||-.. + ..+.+ .+ +..+..+==.+|+...+.-+ + |-++.|.|.+=++ |
T Consensus 1 mKFDvVIGNPPY~~~---~------~~~~~----~~-~~~~~~~iY~~F~e~a~~l~-~-----~~l~~I~P~rw~~-~- 58 (106)
T pfam07669 1 MKFDVVIGNPPYQES---D------NDKEG----GG-GGNSAAPIYQLFVELALKLA-P-----KYLGMITPARWLF-G- 58 (106)
T ss_pred CCCCEEEECCCCCCC---C------CCCCC----CC-CCCCCCCHHHHHHHHHHHHC-C-----CCEEEEECCHHHH-C-
T ss_conf 975889708999433---5------77565----67-77778768999999999856-6-----8569995461001-3-
Q ss_pred CCCCHHHHHHHHHHCCCEEEEEECC--CCCCCCCCCCEEEEEEECCCC
Q ss_conf 4432689999998849468883176--776557886169999946887
Q gi|254780836|r 370 AGSGESEIRRWLLENDLIEAIVALP--TDLFFRTNIATYLWILSNRKT 415 (674)
Q Consensus 370 agsGEs~IRk~lie~d~ieaII~LP--~~lFynTgI~t~Iwil~k~K~ 415 (674)
|.|-++.|++||++..|..|+--| .++|-|++|.+.|.++.+++.
T Consensus 59 -gkg~~~fR~~mL~d~~i~~i~df~~~~~vF~~v~i~ggv~~f~~d~~ 105 (106)
T pfam07669 59 -GKGLKKFREKMLNDKHLRELIDFPDSKDVFPNVDIKGGICYFLKDAN 105 (106)
T ss_pred -CCCHHHHHHHHHCCCCEEEEEECCCHHHCCCCCCCCCCEEEEEECCC
T ss_conf -88699999997568866699963836646899804763799997488
No 22
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.4e-06 Score=62.46 Aligned_cols=166 Identities=17% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
--||-||-+++.-|+...... .+=.+.+|.|-+||||-+=+.| -.+ + .-.++|.|+.++...
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~-------g~l~g~~V~DlG~GTG~La~ga-~~l---G-------a~~V~~vdiD~~a~e 82 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLR-------GDLEGKTVLDLGAGTGILAIGA-ALL---G-------ASRVLAVDIDPEALE 82 (198)
T ss_pred CEECCCCHHHHHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHHHH-HHC---C-------CCEEEEEECCHHHHH
T ss_conf 333479848999999999873-------8847888888278847889999-862---9-------717999936989999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674)
+|+.|.-=-+.+.+ ...+|- ..-..+||.+++|||||.. . . -
T Consensus 83 i~r~N~~~l~g~v~--------f~~~dv----~~~~~~~dtvimNPPFG~~-~-----------r--------------h 124 (198)
T COG2263 83 IARANAEELLGDVE--------FVVADV----SDFRGKFDTVIMNPPFGSQ-R-----------R--------------H 124 (198)
T ss_pred HHHHHHHHHCCCEE--------EEECCH----HHCCCCCCEEEECCCCCCC-C-----------C--------------C
T ss_conf 99988886088469--------998210----1147766669978997322-1-----------3--------------6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCE-----EEEEECCCCCCCCC----CCC
Q ss_conf 659999999996146657880799973897134776443268999999884946-----88831767765578----861
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLI-----EAIVALPTDLFFRT----NIA 404 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~i-----eaII~LP~~lFynT----gI~ 404 (674)
+|..||+-.+.- +-.+--+++ ||+ +.-+++..=+.+.. .+-+.+|....++. -|+
T Consensus 125 aDr~Fl~~Ale~-------s~vVYsiH~--------a~~-~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH~k~~~~I~ 188 (198)
T COG2263 125 ADRPFLLKALEI-------SDVVYSIHK--------AGS-RDFVEKFAADLGGTVTHIERARFPIPRTYPFHRKRVRRIE 188 (198)
T ss_pred CCHHHHHHHHHH-------HHEEEEEEC--------CCC-HHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHEEEEEE
T ss_conf 888999999974-------014787401--------660-7999999885497089999999714765740141255645
Q ss_pred EEEEEEE
Q ss_conf 6999994
Q gi|254780836|r 405 TYLWILS 411 (674)
Q Consensus 405 t~Iwil~ 411 (674)
.-|..+.
T Consensus 189 v~i~r~~ 195 (198)
T COG2263 189 VDIFRFE 195 (198)
T ss_pred EEEEEEE
T ss_conf 9999998
No 23
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=98.39 E-value=2.6e-06 Score=60.66 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=74.4
Q ss_pred CCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 5368179999--99997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 176 DFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 176 effTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
=||.||-... -|++++ .+ ..+|+||.||.|+|-+.+..+- ....+|+.|+||.++.
T Consensus 81 vyfs~rl~~Er~ri~~~~----------~~--ge~VlD~faGvG~f~l~~ak~~----------~~~~V~a~DlNp~a~~ 138 (199)
T pfam02475 81 VYFSPRLIGERERIAKLV----------KE--GEVVVDMFAGIGPFSIPIAKHS----------KAKRVYAVELNPEAVK 138 (199)
T ss_pred EEEECCCHHHHHHHHHHC----------CC--CCEEEECCCCCCHHHHHHHHCC----------CCCEEEEEECCHHHHH
T ss_conf 799547658899999744----------89--9889981688657789986407----------8648999828999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674)
.++-|+-+.++.... .+..||... -.+..+||.|++|||-+.
T Consensus 139 ~l~~N~~lN~v~~~i------~~~~gD~~~--~~~~~~~DrvimnlP~~a------------------------------ 180 (199)
T pfam02475 139 YLKENIKLNKVEGVI------SPILGDVRD--VILEGVADRVIMNLPKSA------------------------------ 180 (199)
T ss_pred HHHHHHHHHCCCCCE------EEEECCHHH--HCCCCCCCEEEECCCCCH------------------------------
T ss_conf 999999980999836------999287878--604674009994897316------------------------------
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 659999999996146
Q gi|254780836|r 334 GSMLFLMHLANKLEL 348 (674)
Q Consensus 334 g~~lFlqh~i~klk~ 348 (674)
.-||.+.+..+++
T Consensus 181 --~~fL~~A~~~lk~ 193 (199)
T pfam02475 181 --HEFLDKALRAVKD 193 (199)
T ss_pred --HHHHHHHHHHHCC
T ss_conf --9999999998558
No 24
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.37 E-value=5.2e-06 Score=58.67 Aligned_cols=108 Identities=20% Similarity=0.304 Sum_probs=71.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
..|.|-.||.|=+=+. +...++. ..+...|+|....+.|+.|+-..++.. .+...|.+++-
T Consensus 198 g~VLDlGCG~Gvi~~~----la~~~p~------~~v~l~Dv~a~Al~~ar~nl~~N~l~~--------~v~~sd~~~~v- 258 (342)
T PRK09489 198 GKVLDVGCGAGVLSAV----LAQHSPK------IRLTLCDVSAPAVEASRATLAANGLEG--------EVFASNVFSEI- 258 (342)
T ss_pred CCEEEECCCHHHHHHH----HHHHCCC------CEEEEEECCHHHHHHHHHHHHHHCCCC--------EEEECCCCCCC-
T ss_conf 8478606781799999----9986999------769999688999999999899809886--------89975644565-
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
..+||.|++||||-.--+.+. +---.||.-.-.+|++ ||+.-+|-|.
T Consensus 259 --~~~fD~IvsNPPFH~G~~~~~-----------------------~i~~~fi~~A~~~L~~----gG~L~iVANr 305 (342)
T PRK09489 259 --KGRFDMIISNPPFHDGIQTSL-----------------------DAAQTLIRGAVRHLNS----GGELRIVANA 305 (342)
T ss_pred --CCCCCEEEECCCCCCCCCCCH-----------------------HHHHHHHHHHHHHHHC----CCEEEEEECC
T ss_conf --567898996885215752658-----------------------9999999999986124----9889999818
No 25
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=98.33 E-value=2.2e-06 Score=61.12 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=58.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457---
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--- 283 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~--- 283 (674)
+.|.|++||+||..++...+. -+++|.|+++....+|+-|--+.|+.... ...+||-+.
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~------------~~Vi~vDi~~~~l~~A~~NA~iyGV~drI------~fi~gD~f~~~~ 63 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVF------------CSVIGIDINPEHLACAQHNAEVYGVSDRI------WFILGDWFELLA 63 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHC------------CEEEEEECCHHHHHHHHHHHHHCCCCCEE------EEEECCHHHHHH
T ss_conf 799993778079999999758------------98999979899999999989983987317------999775999978
Q ss_pred CCCCCCCEEEEEEECCCCCC
Q ss_conf 99986641899981685676
Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~ 303 (674)
.-.....+||+|++.||+|-
T Consensus 64 ~l~~~~~~~DvVf~sPPWGG 83 (165)
T pfam09445 64 KLKFGKIPYDCVFLSPPWGG 83 (165)
T ss_pred HHHHCCCCCCEEEECCCCCC
T ss_conf 87635887558997799999
No 26
>pfam11599 AviRa RRNA methyltransferase AviRa. This family of proteins represents the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA.
Probab=98.22 E-value=1.6e-05 Score=55.46 Aligned_cols=73 Identities=16% Similarity=0.187 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
+|---|||.+++. ...-.. ....+ -.|+||||||+|.||+.-. +...+ ..-.++|-++|++...||..|
T Consensus 28 ~P~FPVRLAsEif-qRal~~-~~g~~-p~tlwDpCCG~gYlLTvlg--LLhr~------~i~~v~aSDVd~~al~LA~~N 96 (249)
T pfam11599 28 EPAFPVRLALEIF-ERALAR-LIGDA-EISLWDCCCGGAYLLSILG--LLHRN------SIANLIASDIDPAPIELAADN 96 (249)
T ss_pred CCCCCHHHHHHHH-HHHHHH-CCCCC-CCCEEECCCCCHHHHHHHH--HHCHH------HHHHHHHCCCCHHHHHHHHHH
T ss_conf 9884189999999-999986-26888-7303305777118999999--85315------787777425887899999864
Q ss_pred HHHH
Q ss_conf 8980
Q gi|254780836|r 259 MLIR 262 (674)
Q Consensus 259 Mli~ 262 (674)
+.|-
T Consensus 97 L~LL 100 (249)
T pfam11599 97 LALL 100 (249)
T ss_pred HHHH
T ss_conf 5440
No 27
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=7.1e-05 Score=51.27 Aligned_cols=109 Identities=19% Similarity=0.227 Sum_probs=68.7
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
+|.|-.||.|=+=+.. ...++. ..+.=.|+|......|+-|+-..+.+.. -|...|..++- .
T Consensus 161 ~vlDlGCG~Gvlg~~l----a~~~p~------~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-------~v~~s~~~~~v-~ 222 (300)
T COG2813 161 KVLDLGCGYGVLGLVL----AKKSPQ------AKLTLVDVNARAVESARKNLAANGVENT-------EVWASNLYEPV-E 222 (300)
T ss_pred CEEEECCCCCHHHHHH----HHHCCC------CEEEEEECCHHHHHHHHHHHHHCCCCCC-------EEEEECCCCCC-C
T ss_conf 6887078842999999----986898------7289982669999998876997398763-------79981244665-4
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 6641899981685676531000111234422666653577774770659999999996146657880799973897
Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSS 363 (674)
Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs 363 (674)
+ +||.|+|||||-.. ..+.. +....++.....+|+ .||++=||-|+.
T Consensus 223 -~-kfd~IisNPPfh~G-----~~v~~------------------~~~~~ii~~A~~~L~----~gGeL~iVan~~ 269 (300)
T COG2813 223 -G-KFDLIISNPPFHAG-----KAVVH------------------SLAQEIIAAAARHLK----PGGELWIVANRH 269 (300)
T ss_pred -C-CCCEEEECCCCCCC-----CCHHH------------------HHHHHHHHHHHHHHC----CCCEEEEEECCC
T ss_conf -4-00689848884677-----10167------------------889999999997604----597799997588
No 28
>PHA02056 putative methyltransferase
Probab=98.03 E-value=6.6e-06 Score=58.01 Aligned_cols=182 Identities=24% Similarity=0.328 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHH-HHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999986227665753681799999-999731784011013877640311766540468999999999853100533
Q gi|254780836|r 159 YEHLIRRFGSEVSEGAEDFMTPRDVVHL-ATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 (674)
Q Consensus 159 yE~LIrkFae~~~~~aGeffTPR~Vi~L-mv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~ 237 (674)
=|..++.|.+.+-...|-||||-.+..= .++. +..-+|.|-|+|-|+ |+-++-+- . +
T Consensus 30 KeFv~~Nf~e~~~~a~GAFFTP~~lA~DF~IDa-------------~~tG~iiDLCAGIG~-LSy~~~~r---~---k-- 87 (279)
T PHA02056 30 KEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDA-------------HCTGKVLDLCAGIGR-LSFCMLHR---C---K-- 87 (279)
T ss_pred HHHHHHCCCCCCCCCCCCEECHHHHHHHEEEEC-------------CCCCEEEEECCCCCH-HHHHHHHC---C---C--
T ss_conf 677875155444456553435156430225502-------------578538882146123-57999850---6---8--
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC-CCCCCHHHHHHHH
Q ss_conf 322550466667889999999898088753345666682347545799986641899981685676-5310001112344
Q gi|254780836|r 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK-KWEKDKDAVEKEH 316 (674)
Q Consensus 238 ~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~-~Wk~~~~~v~~e~ 316 (674)
...+--.|+|++-+.++|- ++ +. +.-..+|.|.-.. ..+||.+++|||||. +-+ +.
T Consensus 88 -p~~ivCVErN~~y~~vGkk--il----Pe------AtWI~~Dv~~~~~--~~~FD~aIsNPPFG~i~~~-~s------- 144 (279)
T PHA02056 88 -PEKIVCVELNPEFARIGKR--LL----PE------AEWITSDVFEFES--NEKFDVVISNPPFGKINTT-DT------- 144 (279)
T ss_pred -CCCEEEEEECHHHHHHHHH--CC----CC------CEEEECCEECCCC--CCCEEEEECCCCCCCCCCC-CC-------
T ss_conf -8635899408579886432--07----64------0277323130356--6620045338997643333-35-------
Q ss_pred HCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCC--------CCCCCCCHHHHHHHHHHCCCE
Q ss_conf 2266665357777477065999-9999996146657880799973897134--------776443268999999884946
Q gi|254780836|r 317 KNGELGRFGPGLPKISDGSMLF-LMHLANKLELPPNGGGRAAIVLSSSPLF--------NGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 317 ~~~~~~Rf~~glP~~sdg~~lF-lqh~i~klk~~~~~ggr~aIV~ngs~LF--------~G~agsGEs~IRk~lie~d~i 387 (674)
+ +.|+-+-+.+-| +....+++... | .-||+.+|+=| .+..+|+ +--||+=+.+++
T Consensus 145 K---------~~~~ytg~~FE~~Vi~~a~~~Ad~---G--~FIiPqmSA~F~YSG~~~y~~~~~s~--k~~Kf~~qTGl~ 208 (279)
T PHA02056 145 K---------DVFEYTGGEFEFKVMTLGQKFADV---G--YFIVPSGSAGFAYSGRPYYDGTMKSN--KYLKWSKQTGLV 208 (279)
T ss_pred C---------CCCCCCCCCEEEEEEHHHHHHHCC---C--EEEEECCCCCCCCCCCCCCCCCCCCH--HHHHHHHHCCEE
T ss_conf 7---------886645761157732456676306---3--49961466676757873336666642--667678644747
Q ss_pred EEEEECCCCCCCCCCCCEEEEEE
Q ss_conf 88831767765578861699999
Q gi|254780836|r 388 EAIVALPTDLFFRTNIATYLWIL 410 (674)
Q Consensus 388 eaII~LP~~lFynTgI~t~Iwil 410 (674)
+--|-||-|++.+=
T Consensus 209 ---------~~~gCGiDTs~y~d 222 (279)
T PHA02056 209 ---------TYAGCGIDTSIYRD 222 (279)
T ss_pred ---------ECCCCCCCCEEEHH
T ss_conf ---------40797744004241
No 29
>KOG3420 consensus
Probab=97.98 E-value=1.8e-05 Score=55.18 Aligned_cols=105 Identities=21% Similarity=0.318 Sum_probs=71.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
-.||-||.++.--|+..+-..-+|. .| +++.|-+||+| ||+.|..+. . .-.+-|-++.|++.-
T Consensus 23 LEQY~T~p~iAasM~~~Ih~Tygdi----Eg--kkl~DLgcgcG-mLs~a~sm~-----~-----~e~vlGfDIdpeALE 85 (185)
T KOG3420 23 LEQYPTRPHIAASMLYTIHNTYGDI----EG--KKLKDLGCGCG-MLSIAFSMP-----K-----NESVLGFDIDPEALE 85 (185)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHCCC----CC--CCHHHHCCCHH-HHHHHHHCC-----C-----CCEEEEEECCHHHHH
T ss_conf 5517996789999999998620120----47--46225247611-567775057-----8-----733786405889999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 999998980887533456666823475457999866418999816856765
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
||.-|..---+.. +....| ..+..+.+..||..+.|||||..
T Consensus 86 If~rNaeEfEvqi--------dlLqcd-ildle~~~g~fDtaviNppFGTk 127 (185)
T KOG3420 86 IFTRNAEEFEVQI--------DLLQCD-ILDLELKGGIFDTAVINPPFGTK 127 (185)
T ss_pred HHHHCHHHHHHHH--------HEEEEE-CCCHHCCCCEEEEEEECCCCCCC
T ss_conf 9861668752334--------212222-15511058767667866898764
No 30
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.78 E-value=0.0001 Score=50.28 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=66.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
+|.|-.||||.+.....++ ....++|.|+++.....|+-+..-.+.. .-.+..+|....+.+
T Consensus 1 rVLDiGcG~G~~~~~l~~~-----------~~~~v~~iD~s~~~~~~a~~~~~~~~~~-------~~~~~~~d~~~~~~~ 62 (107)
T cd02440 1 RVLDLGCGTGALALALASG-----------PGARVTGVDISPVALELARKAAAALLAD-------NVEVLKGDAEELPPE 62 (107)
T ss_pred CEEEEECCCCHHHHHHHHC-----------CCCEEEEEECCHHHHHHHHHHHHHCCCC-------CEEEECCCHHHCCHH
T ss_conf 9999988879999999956-----------8988999989888999999987532788-------646714886788632
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674)
Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674)
+..+||+|++|++|.- |..+ ...++..+...||| ||++.+.
T Consensus 63 ~~~~fD~V~~~~~~~~-~~~~--------------------------~~~~l~~~~~~Lkp----gG~~~is 103 (107)
T cd02440 63 ADESFDVIISDPPLHH-LVED--------------------------LARFLEEARRLLKP----GGVLVLT 103 (107)
T ss_pred HCCCEEEEEEECCEEC-CCCC--------------------------HHHHHHHHHHHCCC----CCEEEEE
T ss_conf 0575319999175010-6518--------------------------99999999987485----8199999
No 31
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=97.68 E-value=0.00057 Score=45.36 Aligned_cols=82 Identities=23% Similarity=0.274 Sum_probs=52.5
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCC
Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682--3475
Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGS 280 (674)
Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~Gd 280 (674)
+.+..+|.|-|||||-+.....+.+ . ...+++|-|+++.+-++|+...--.+.. .|| ..||
T Consensus 49 ~~~g~~vLDvgcGTG~~~~~l~~~~---~------~~~~v~g~D~S~~ML~~A~~k~~~~~~~--------~~i~~~~~d 111 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAV---G------ETGEVVGLDFSEGMLAVGREKLLDKGLS--------GNVEFVQGD 111 (239)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHC---C------CCCEEEEEECCHHHHHHHHHHHHHCCCC--------CCCEEEEEC
T ss_conf 8999989884577638799999972---9------9767999919889999999999973898--------885079823
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 457999866418999816856765
Q gi|254780836|r 281 TLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 281 TL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
...- .|++..||.|.+. ||..
T Consensus 112 a~~l-pf~d~sfD~v~~~--f~l~ 132 (239)
T PRK00216 112 AEAL-PFPDNSFDAVTIA--FGLR 132 (239)
T ss_pred CCCC-CCCCCCCCCCCCC--CEEE
T ss_conf 5568-8876667650026--1567
No 32
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=97.63 E-value=0.00044 Score=46.11 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=52.5
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCC
Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682--3475
Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGS 280 (674)
Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~Gd 280 (674)
+.+...|+|-|||||-+.....+.+. ....++|.|+++..-++|+...--.+. .|| ..||
T Consensus 45 ~~~g~~vLDl~cGTG~~~~~l~~~~~---------~~~~v~gvD~S~~ML~~a~~k~~~~~~---------~~i~~~~~d 106 (233)
T pfam01209 45 VKRGNKFLDVAGGTGDWTFGLSDSAG---------SSGKVVGLDINENMLKEGEKKAKEEGK---------YNIEFLQGN 106 (233)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHCCC---------CCCEEEEEC
T ss_conf 99999899825405889999999849---------997499996999999999999985699---------983699821
Q ss_pred CCCCCCCCCCEEEEEEECCCC
Q ss_conf 457999866418999816856
Q gi|254780836|r 281 TLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 281 TL~~d~~~~~kFD~vlaNPPF 301 (674)
...- .|++..||.|.++--+
T Consensus 107 a~~l-pf~d~sfD~v~~~fgl 126 (233)
T pfam01209 107 AEEL-PFEDDSFDIVTISFGL 126 (233)
T ss_pred CCCC-CCCCCCCCHHHHHHHH
T ss_conf 6668-8666565731421012
No 33
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=97.58 E-value=0.0011 Score=43.52 Aligned_cols=145 Identities=30% Similarity=0.371 Sum_probs=83.3
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
.|..--.||| |++- + ...+....+-|.++||-....++-|-.|.|.+.+ -+..|-|
T Consensus 24 eVlEiG~GtG--lvai----r-----~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~-------------v~~~Dlf 79 (183)
T TIGR00537 24 EVLEIGAGTG--LVAI----R-----LKEKGKKKILTTDINPFAVKLLRENAKLNNVELD-------------VLETDLF 79 (183)
T ss_pred EEEEEECCHH--HHHH----H-----HHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEE-------------EEECCCC
T ss_conf 2899716804--8999----9-----8515882078863687999987731000266404-------------7611135
Q ss_pred ---CCCEEEEEEECCCCCCCCCCCH--HHHHHHH-HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf ---6641899981685676531000--1112344-226666535777747706599999999961466578807999738
Q gi|254780836|r 288 ---TGKRFHYCLSNPPFGKKWEKDK--DAVEKEH-KNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 288 ---~~~kFD~vlaNPPFg~~Wk~~~--~~v~~e~-~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
.++|||+||=||||=- -..+. ..+-+-+ .-|.+||-- =| =||-.+=.+|+ .|||+-+|-
T Consensus 80 ~~v~geKFdviLFNpPYlp-~~~d~~~gd~Ld~A~dGGkdGr~v------id---rFldelp~~lk----~gGrv~l~~- 144 (183)
T TIGR00537 80 EGVRGEKFDVILFNPPYLP-LEDDEKRGDYLDLAIDGGKDGRKV------ID---RFLDELPEYLK----EGGRVQLIQ- 144 (183)
T ss_pred CCCCCCCEEEEEECCCCCC-CCCCCCCCCEEEEEECCCCCCHHH------HH---HHHHHHHHHHC----CCCEEEEEE-
T ss_conf 7855551027730789888-876523476644333178730578------88---88765688870----599899996-
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 97134776443268999999884946888317677655
Q gi|254780836|r 362 SSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 (674)
Q Consensus 362 gs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy 399 (674)
|+| +||.+.=+.|=+.++=-.|++ -..+|+
T Consensus 145 -SSl------~~e~~~~~kl~~~GF~~ei~a-~~~~fF 174 (183)
T TIGR00537 145 -SSL------SDEKDTLDKLDELGFKVEIVA-ERKLFF 174 (183)
T ss_pred -ECC------CCCHHHHHHHHHCCCCEEEEE-CCCCCE
T ss_conf -066------886889988761588479986-367871
No 34
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=97.45 E-value=0.0021 Score=41.73 Aligned_cols=153 Identities=17% Similarity=0.185 Sum_probs=73.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH-CCCCCC---CCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980-887533---45666682347545
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDP---RRDLSKNIQQGSTL 282 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~-g~~~d~---~~~~~~NI~~GdTL 282 (674)
.+++|--||.....- +-+.... ..++.|-|+++.++..|+.|.-.. ++.... +.....+|..|
T Consensus 67 v~gLDIGtGAscIYP--------LLg~~~y--~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~if~g--- 133 (254)
T pfam05971 67 RRALDIGTGANCIYP--------LLGVTEY--GWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQSTLIFNG--- 133 (254)
T ss_pred CEEEEECCCHHHHHH--------HHCCCCC--CCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCCCCCC---
T ss_conf 467773366415777--------5404004--863797627989999999999858332311699963781102234---
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC------------CHHHHHHHHHHHHHHCCCC
Q ss_conf 7999866418999816856765310001112344226666535777747------------7065999999999614665
Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI------------SDGSMLFLMHLANKLELPP 350 (674)
Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~------------sdg~~lFlqh~i~klk~~~ 350 (674)
--.++++||++|+||||=.+ .++........ .+| .||. .-|...|+..||.-=.
T Consensus 134 --ii~~~e~fdftmCNPPF~~S---~~ea~~~~~rk--~~~----~~p~~~f~G~~~El~~~GGE~~Fi~rMI~ES~--- 199 (254)
T pfam05971 134 --LIGENERYDFTLCNPPFHAS---LAEAKGGSSRK--PGR----PPPSLNFGGQIAELWCEGGEAAFIKKMIEESL--- 199 (254)
T ss_pred --CCCCCCCEEEEECCCCCCCC---HHHHHHHHHCC--CCC----CCCCCCCCCCCCEEEECCCHHHHHHHHHHHHH---
T ss_conf --46876606663037986678---88887776446--678----99730356753066746845999999999999---
Q ss_pred CCCCEEEEECCCCCCCCCCCCC--CHHHHHHHHHHCCCEE-EEEEC
Q ss_conf 7880799973897134776443--2689999998849468-88317
Q gi|254780836|r 351 NGGGRAAIVLSSSPLFNGRAGS--GESEIRRWLLENDLIE-AIVAL 393 (674)
Q Consensus 351 ~~ggr~aIV~ngs~LF~G~ags--GEs~IRk~lie~d~ie-aII~L 393 (674)
.-..|+.. ||.--|. .=..+++.|-+.+.-+ +++.+
T Consensus 200 ~~~~~v~W-------fTsmvgKks~l~~l~~~L~~~~~~~~~~~em 238 (254)
T pfam05971 200 QFAKQVRW-------FTTLVSKGCNLPPLKEELRILGAPKVTVTEM 238 (254)
T ss_pred HHCCCCEE-------ECCCCCCCCCHHHHHHHHHHCCCCEEEEEEE
T ss_conf 86447579-------8313666214999999999769977999983
No 35
>KOG2904 consensus
Probab=97.40 E-value=0.00035 Score=46.73 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
.|-||.=....|+++....... .--+..-|+|-+||||-+=+....-+ . ...+-..|..+...++|+
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~---~~~~~~~ildlgtGSGaIslsll~~L---~-------~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904 123 VLIPRPETEEWVEAVIDALNNS---EHSKHTHILDLGTGSGAISLSLLHGL---P-------QCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred EEECCCCHHHHHHHHHHHHHHH---HHCCCCEEEEECCCCCHHHHHHHHCC---C-------CCEEEEEECCHHHHHHHH
T ss_conf 4326846799999999997556---53266668870578318899998347---8-------734899853288999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 99898088753345666682347545799986641899981685676
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674)
-|+..-+...-. ....||..+|-+.+-.....+.|.+++||||-.
T Consensus 190 eN~qr~~l~g~i--~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~ 234 (328)
T KOG2904 190 ENAQRLKLSGRI--EVIHNIMESDASDEHPLLEGKIDLLVSNPPYIR 234 (328)
T ss_pred HHHHHHHHCCCE--EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCC
T ss_conf 889987415846--898412220125655454575248853899655
No 36
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.39 E-value=0.00045 Score=46.04 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
|+--|-.-+-++|.. .+. + ..|.|-+||||.|=.+|..+ .+ ..++-.|.|..+.++.+-|
T Consensus 35 T~drvREalFn~L~~----~i~---~--~~vLDLFAGSGalGlEALSR------GA-----~~v~fVE~~~~~~~~i~~N 94 (198)
T PRK10909 35 TTDRVRETLFNWLAP----VIV---D--ARCLDCFAGSGALGLEALSR------YA-----AGATLLEMDRAVSQQLIKN 94 (198)
T ss_pred CCHHHHHHHHHHHHH----HCC---C--CEEEECCCCCCHHHHHHHHC------CC-----CEEEEEECCHHHHHHHHHH
T ss_conf 838899999987576----429---9--87998277746889999987------99-----7899997899999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8980887533456666823475457999866418999816856765
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
+-.-+.+ ...|..+|.+.--.....+||+|.+.|||+..
T Consensus 95 ~~~l~~~-------~~~ii~~da~~~L~~~~~~fDlIF~DPPY~~~ 133 (198)
T PRK10909 95 LATLKAG-------NARVVNTNALSFLAQPGTPHNVVFVDPPFRKG 133 (198)
T ss_pred HHHHCCC-------CEEEEEHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 9984888-------67999556999862559952189989997655
No 37
>PRK08317 hypothetical protein; Provisional
Probab=97.37 E-value=0.0025 Score=41.20 Aligned_cols=197 Identities=17% Similarity=0.159 Sum_probs=102.1
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
...++.+|.|-.||+|.+.....+.+ . ....++|.|+++.....|+...--.+.+. ....||.
T Consensus 16 ~l~pG~~vLDiGcG~G~~~~~la~~~---g------~~~~v~gvD~s~~~l~~a~~~~~~~~~~v--------~~~~~d~ 78 (241)
T PRK08317 16 AVQPGERVLDVGCGPGNDLRELADRV---G------PEGRVVGIDRSEAMLALARERAAGLLSNV--------EFVRGDA 78 (241)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHH---C------CCCEEEEEECCHHHHHHHHHHHHHCCCCE--------EEEECCH
T ss_conf 99997999996641749999999974---9------99789999698899999999986228964--------9995546
Q ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 57999866418999816856765310001112344226666535777747706599999999961466578807999738
Q gi|254780836|r 282 LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 282 L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
. +-.|++..||.|++.=-+- + +| |- -..|..|..-||| |||++|+-.
T Consensus 79 ~-~lp~~d~sfD~v~~~~~l~--h----------------------~~---d~-~~~l~e~~RvLkP----GG~~vi~d~ 125 (241)
T PRK08317 79 D-GLPFPDESFDAVRSDRVLQ--H----------------------LE---DP-RRALAEMARVLRP----GGRAVVLDT 125 (241)
T ss_pred H-HCCCCCCCCCEEEHHHHHH--H----------------------CC---CH-HHHHHHHHHHCCC----CCEEEEEEC
T ss_conf 4-3589888704562211576--2----------------------25---89-9999999998188----838999966
Q ss_pred --CCCCCCCCCCCCHHHHHHHHHHC---CCEEEEEE--CCCC----CCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHH
Q ss_conf --97134776443268999999884---94688831--7677----6557886169999946887434883899723677
Q gi|254780836|r 362 --SSPLFNGRAGSGESEIRRWLLEN---DLIEAIVA--LPTD----LFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 (674)
Q Consensus 362 --gs~LF~G~agsGEs~IRk~lie~---d~ieaII~--LP~~----lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~ 430 (674)
+|.++.+. +..+-+.+++- ..-+.-|+ ||.- =|-+..+..+.++.+...+.. .+..+ ...
T Consensus 126 Dw~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~gr~L~~~l~~aG~~~v~~~~~~~~~~~~~~~~---~~~~l--~~~ 196 (241)
T PRK08317 126 DWDTLVIHSG----DRALMRKILNFWSDHFANPWLGRRLPGLFREAGLTDIEVEPYTLIETDLKEAD---KGFDL--IRI 196 (241)
T ss_pred CCCCCCCCCC----CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC---HHHHH--HHH
T ss_conf 7886742898----88999999999997478920789999999986990568888778426866353---48799--999
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 6576404664420698999999999972102
Q gi|254780836|r 431 WTSIRNEGKKRRIINDDQRRQILDIYVSREN 461 (674)
Q Consensus 431 ~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e 461 (674)
-..+-. ...+++++++....-.....+
T Consensus 197 ~~~~~~----~g~~t~~e~~~w~~~l~~~~~ 223 (241)
T PRK08317 197 ARYAVE----AGAISADEADAWLADLAELAR 223 (241)
T ss_pred HHHHHH----CCCCCHHHHHHHHHHHHHHHH
T ss_conf 999998----399999999999999999873
No 38
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=97.37 E-value=0.001 Score=43.80 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
-|.|=|-|-..++|-+++ .++ .+|+|--||||= |..|...+ + + .+++|.++.|.+..
T Consensus 141 TG~H~TT~lcl~~l~~~~----------~~~--~~vlD~GcGSGI-LaIaA~kl---G--a-----~~v~a~DiDp~Av~ 197 (294)
T pfam06325 141 TGTHPTTALCLEALESLV----------KPG--ETVLDVGCGSGI-LAIAALKL---G--A-----KKVVGVDIDPVAVR 197 (294)
T ss_pred CCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCHHH-HHHHHHHC---C--C-----CCEEEEECCHHHHH
T ss_conf 777757999999998650----------369--867850565089-99999975---9--9-----96899988899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 999998980887533456666823475457999866418999816856
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
.|+-|.-+.++.. ++.... ..+ ....+||.|+||==.
T Consensus 198 ~a~eN~~~N~v~~--------~~~~~~--~~~-~~~~~~DlIvANIla 234 (294)
T pfam06325 198 AAKENAELNGVEA--------QLEVYL--PGD-LPEGKADVVVANILA 234 (294)
T ss_pred HHHHHHHHCCCCC--------CEEEEC--CCC-CCCCCCCEEEEHHCH
T ss_conf 9999999769983--------179964--431-556645789841089
No 39
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.33 E-value=0.001 Score=43.80 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=93.8
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
.|.|| +-+.+.+.|++.+. +.+... .. .|+|-.||+|.|=....... ..++|.|+++++.
T Consensus 182 p~sFfQvN~~~~e~l~~~a~----~~~~~~--~~-~vlDLYcG~Gtfsl~LA~~~------------~~V~gVE~~~~aV 242 (363)
T PRK05031 182 ENSFTQPNAAVNEKMLEWAL----DATKGS--KG-DLLELYCGNGNFTLALARNF------------RRVLATEISKPSV 242 (363)
T ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHCC--CC-CEEEEECCCCHHHHHHHHHC------------CEEEEEECCHHHH
T ss_conf 99842479899999999999----976138--98-28986058664269988626------------8799995389999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------C---------CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999989808875334566668234754------5---------79998664189998168567653100011123442
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------L---------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L---------~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
.-|+.|.-+.|++.-. ...|+. + ..-......||.|+.+||=.
T Consensus 243 ~~A~~NA~~N~i~N~~-------fi~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~d~vvvDPPR~--------------- 300 (363)
T PRK05031 243 AAAQYNIAANGIDNVQ-------IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNFSTIFVDPPRA--------------- 300 (363)
T ss_pred HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEECCCCC---------------
T ss_conf 9999999986998649-------996589999998734310100124664435586489899988---------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2666653577774770659999999996146657880799973-897134776443268999999884946888317677
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~ 396 (674)
| +-+ -.+ +.|.++ -|+.=|- |-++|= -.++ .|.+.-.|+.|. |-+
T Consensus 301 -------G--l~~------~~~-~~i~~~-------~rIVYVSCnP~Tla--------RDl~-~L~~~y~l~~v~--~vD 346 (363)
T PRK05031 301 -------G--LDE------ETL-KLVQNY-------ERILYISCNPETLK--------ENLE-TLSQTHKVERFA--LFD 346 (363)
T ss_pred -------C--CCH------HHH-HHHHCC-------CEEEEEECCHHHHH--------HHHH-HHHHCCEEEEEE--EEC
T ss_conf -------8--749------999-998368-------90999928989999--------9999-987446588999--842
Q ss_pred CCCCCCCCEEEEEEECC
Q ss_conf 65578861699999468
Q gi|254780836|r 397 LFFRTNIATYLWILSNR 413 (674)
Q Consensus 397 lFynTgI~t~Iwil~k~ 413 (674)
||-.|.=-=+|-+|+++
T Consensus 347 mFPqT~HvE~valL~rk 363 (363)
T PRK05031 347 QFPYTHHMECGVLLEKK 363 (363)
T ss_pred CCCCCCCEEEEEEEEEC
T ss_conf 69999727899999809
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.31 E-value=0.0031 Score=40.60 Aligned_cols=106 Identities=22% Similarity=0.128 Sum_probs=70.5
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
++.+|.|=.||||-....+...+- ....++|.++++++.+.|+.|.--.|... -..+.||-- +
T Consensus 73 pGe~VLDLGcG~G~d~~~aA~~VG---------~~G~ViGVD~s~~ML~~Ar~~a~~~G~~N-------VeF~~Gdae-~ 135 (258)
T PRK11873 73 PGETVLDLGSGAGFDCFLAARRVG---------PTGKVIGVDMTPEMLAKARANARKAGYTN-------VEFRLGEIE-A 135 (258)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHC---------CCCEEEEECCCHHHHHHHHHHHHHCCCCC-------EEEEEECCC-C
T ss_conf 999899947887775999999869---------99779998599999999999999759975-------599995553-1
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 998664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r 285 DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674)
Q Consensus 285 d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674)
-.+++..||+|+||==++. -.++. ..+..+..-||| |||++|.
T Consensus 136 LPl~D~SfDvViSncVlnl--~pDk~--------------------------~vl~E~~RVLKP----GGRl~IS 178 (258)
T PRK11873 136 LPVADGSVDVIISNCVINL--SPDKE--------------------------RVFREAFRVLKP----GGRFAIS 178 (258)
T ss_pred CCCCCCCEEEEEECCEEEC--CCCHH--------------------------HHHHHHHHHCCC----CCEEEEE
T ss_conf 3689883519988246760--79879--------------------------999999996288----9789999
No 41
>PRK06202 hypothetical protein; Provisional
Probab=97.30 E-value=0.0011 Score=43.41 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674)
Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674)
|+...+|.|-+||+|.++..-..+.+.. + ..+++.|.++||.+.++|+.+---.|+.. .....+.|
T Consensus 59 ~~r~~~VLDlGcG~Gdl~~~lar~a~~~----g--~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~--------~~~~~d~l 124 (233)
T PRK06202 59 PDRPLTVLDLGCGGGDLAIDLARWARRD----G--LRLEVTAIDPDPRAIRFARANARRRGVTF--------RFAVSDEL 124 (233)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC----C--CCEEEEEECCCHHHHHHHHHHCCCCCCCE--------EEEEHHHH
T ss_conf 7887289983478757999999999755----9--96389997798899999987340369836--------99734320
Q ss_pred CCCCCCCCEEEEEEECCCC
Q ss_conf 7999866418999816856
Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 283 ~~d~~~~~kFD~vlaNPPF 301 (674)
. +.+..||+|++|==.
T Consensus 125 ~---~~~~~~DvV~~sl~L 140 (233)
T PRK06202 125 V---AEGERFDVVYSNHFL 140 (233)
T ss_pred C---CCCCCCCEEEHHHHH
T ss_conf 2---457887576032468
No 42
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.17 E-value=0.00089 Score=44.11 Aligned_cols=166 Identities=18% Similarity=0.170 Sum_probs=94.2
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
++.|| +-..+...|++.+. +.+...+ ..+|+|-.||+|.|-.....+ ...++|.|+++++.
T Consensus 207 p~sFfQvN~~~~~~L~~~~~----~~~~~~~--~~~vlDlycG~G~~sl~lA~~------------~~~V~gvE~~~~av 268 (375)
T PRK03522 207 PQSFFQTNPAVAAQLYATAR----DWVRELP--PKSMWDLFCGVGGFGLHCATP------------DMQLTGIEISAEAI 268 (375)
T ss_pred CCCCCCCCHHHHHHHHHHHH----HHHHCCC--CCEEEEECCCCCHHHHHHHHC------------CCEEEEEEECHHHH
T ss_conf 53214659999999999999----9863158--978999657853888987641------------78899998459999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674)
+-|+.|.-..|++.- ....||+..--.-...++|.|+.+||-. | +-
T Consensus 269 ~~A~~na~~ngi~nv-------~f~~~d~~~~~~~~~~~~d~vvvDPPR~----------------------G--l~--- 314 (375)
T PRK03522 269 ACAKQSAAELGLTNV-------QFQALDSTQFATAQGEVPELVLVNPPRR----------------------G--IG--- 314 (375)
T ss_pred HHHHHHHHHCCCCCE-------EEEECCHHHHHHHCCCCCCEEEECCCCC----------------------C--CH---
T ss_conf 999999998699876-------9997377888763456897899899977----------------------7--51---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEE
Q ss_conf 0659999999996146657880799973-897134776443268999999884946888317677655788616999994
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILS 411 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~ 411 (674)
-.++ +.|.+++| -|++-|- |-++|-| .+. .+ .+|= -.-.-|=+||-.|.==-+|-+|.
T Consensus 315 ---~~~~-~~l~~~~p-----~~IvYVSCnP~TlaR--------Dl~--~L-~gy~-l~~v~~~DmFPqT~HvE~v~lL~ 373 (375)
T PRK03522 315 ---KPLC-DYLSQMAP-----RFILYSSCNAQTMAK--------DLA--HL-PGYR-IERVQLFDMFPHTAHYEVLTLLV 373 (375)
T ss_pred ---HHHH-HHHHHCCC-----CEEEEEECCHHHHHH--------HHH--HH-CCCE-EEEEEEECCCCCCCCEEEEEEEE
T ss_conf ---9999-99986599-----969999079899999--------988--84-3976-88999953698997189999999
Q ss_pred C
Q ss_conf 6
Q gi|254780836|r 412 N 412 (674)
Q Consensus 412 k 412 (674)
+
T Consensus 374 R 374 (375)
T PRK03522 374 R 374 (375)
T ss_pred E
T ss_conf 5
No 43
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=97.14 E-value=0.00034 Score=46.84 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=77.9
Q ss_pred HHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43899999999-98622766575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r 155 MSNIYEHLIRR-FGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674)
Q Consensus 155 mG~iyE~LIrk-Fae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674)
+|.+-+..-++ |.+. ....-.||.|-.+.-.+++.+..-. .-.....+.||.|||||+|+++.-.
T Consensus 159 ~~~~~~~~~~~~~~~~-~p~~~p~~~p~~~~p~~~~~~~~~~------~~~~g~~~~dp~~g~gg~~~~~gl~------- 224 (358)
T TIGR01177 159 LGRLLAERDKEQFGER-KPDRRPFFKPGSLDPKLARALVNLA------GVKEGDRLLDPFCGTGGFLIEAGLL------- 224 (358)
T ss_pred EEHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHHHHHHHH------HCCCCCCEECCCCCCCCHHHHHHHH-------
T ss_conf 4112234201343212-6554643256555546777776542------0246751004222666033233332-------
Q ss_pred CCCCCCEEEECC-CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CC--CEEEEEEECCCCCCC
Q ss_conf 053332255046-666788999999989808875334566668234754579998-66--418999816856765
Q gi|254780836|r 234 HKIPPILVPHGQ-ELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF-TG--KRFHYCLSNPPFGKK 304 (674)
Q Consensus 234 ~~~~~~~~lyGQ-Ein~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~-~~--~kFD~vlaNPPFg~~ 304 (674)
....+|. ++.....+=|+.|+--.+.... .-.+..+|.-.-+.. ++ +.+|-+.+.||||..
T Consensus 225 -----g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~p~g~~ 289 (358)
T TIGR01177 225 -----GAKPIGCGDLDWKLVEGARLNLEHYGIEDK-----VFSVKRGDAKDLPLRLPGLDESVDAIATDPPYGRS 289 (358)
T ss_pred -----CCCCCCCCHHHHHHHCCCHHHHHHCCCCCC-----EEEEEECCCHHCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf -----110002440356764252111333055431-----56764033001110035310112222125654531
No 44
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.09 E-value=0.0014 Score=42.74 Aligned_cols=73 Identities=25% Similarity=0.431 Sum_probs=46.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 311766540468999999999853100533-32255046666788999999989808875334566668234754579--
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIP-PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-- 284 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~-~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-- 284 (674)
+|.|==||.|.+|-. |++...-.+.+ ..-.+||-|+....-+=| +.||++- ..|| |..
T Consensus 16 RVLDLGCGdG~LL~~----L~d~k~v~GPPttehRL~G~Eid~~~v~Ac----~~RGv~V----------Iq~D-ld~GL 76 (205)
T TIGR02081 16 RVLDLGCGDGELLAL----LRDEKQVRGPPTTEHRLYGIEIDQDGVLAC----VARGVSV----------IQGD-LDEGL 76 (205)
T ss_pred EEEEECCCCHHHHHH----HHHHCCCCCCCCCCCEEEEEEECHHHHHHH----HHCCCCE----------ECCC-CCCCC
T ss_conf 364101688789999----997437898887120001023454459999----8625201----------3006-00340
Q ss_pred CCCCCCEEEEEEECC
Q ss_conf 998664189998168
Q gi|254780836|r 285 DLFTGKRFHYCLSNP 299 (674)
Q Consensus 285 d~~~~~kFD~vlaNP 299 (674)
+.|.+++||||+-|=
T Consensus 77 ~~F~D~~FD~ViLsQ 91 (205)
T TIGR02081 77 EAFPDKSFDYVILSQ 91 (205)
T ss_pred CCCCCCCCCEEEECH
T ss_conf 116788766254213
No 45
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=97.06 E-value=0.0019 Score=41.95 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=93.2
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
.|.|| +-+.+...|++.+.. .+... .. .|+|--||+|.|=....+.. -.+.|.|+++++.
T Consensus 172 p~sFfQvN~~~~~~l~~~a~~----~~~~~--~~-~vlDlYcG~Gtfsl~lA~~~------------~~V~GvE~~~~AV 232 (353)
T pfam05958 172 ENSFTQPNAAVNIKMLEWACE----VTQGS--KG-DLLELYCGNGNFSLALAQNF------------RRVLATEIAKPSV 232 (353)
T ss_pred CCCEECCCHHHHHHHHHHHHH----HHHCC--CC-CEEEEECCCCHHHHHHHHHC------------CEEEEEECCHHHH
T ss_conf 999778698999999999999----86268--99-58998468888889998647------------8799996259999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------C---------CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 99999989808875334566668234754------5---------79998664189998168567653100011123442
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------L---------SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L---------~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
.-|+.|.-+.|++.-. ...+++ + ..-...+..||.|+-+||=.
T Consensus 233 ~~A~~Na~~N~i~Nv~-------f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR~--------------- 290 (353)
T pfam05958 233 NAAQYNIAANNIDNVQ-------IIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA--------------- 290 (353)
T ss_pred HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCCC---------------
T ss_conf 9999989986998649-------997289999998752422332036663224677258489877---------------
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2666653577774770659999999996146657880799973-897134776443268999999884946888317677
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTD 396 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~ 396 (674)
| + +. -+++ .+.++ .|++=|- |-++|= -.+. .|.+.--|+.| -|-+
T Consensus 291 -------G--~----~~--~~~~-~i~~~-------~rIvYVSCnP~Tla--------RDl~-~L~~~Y~l~~v--~pvD 336 (353)
T pfam05958 291 -------G--L----DP--DTCK-LVQAY-------ERILYISCNPETLK--------ANLE-QLSETHRVERF--ALFD 336 (353)
T ss_pred -------C--C----HH--HHHH-HHHCC-------CCEEEEECCHHHHH--------HHHH-HHHCCCEEEEE--EEEC
T ss_conf -------7--7----39--9999-98469-------96899948999999--------9999-98406478799--9823
Q ss_pred CCCCCCCCEEEEEEEC
Q ss_conf 6557886169999946
Q gi|254780836|r 397 LFFRTNIATYLWILSN 412 (674)
Q Consensus 397 lFynTgI~t~Iwil~k 412 (674)
||-.|.=-=+|-+|.+
T Consensus 337 mFPqT~HvE~V~lL~r 352 (353)
T pfam05958 337 QFPYTHHMECGVLLER 352 (353)
T ss_pred CCCCCCEEEEEEEEEC
T ss_conf 6999971898999980
No 46
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=97.04 E-value=0.0068 Score=38.36 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=95.8
Q ss_pred HHHHHHHCC---CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999986227---66575368179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r 163 IRRFGSEVS---EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 (674)
Q Consensus 163 IrkFae~~~---~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~ 239 (674)
|.+|+..+. ..-|.|.+=+..-.+-+..+-. .+ .|-.+.+|.|--|| ||.|+++.-.+ +
T Consensus 9 i~~F~~la~~WWd~~g~~~~Lh~~N~~R~~~i~~----~~--~~l~G~~ILDVGCG-gG~lse~LAr~-------G---- 70 (233)
T PRK05134 9 IAKFSALAARWWDPNGEFKPLHRINPLRLNYIRE----HA--GGLFGKRVLDVGCG-GGILSESMARL-------G---- 70 (233)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH----HC--CCCCCCEEEEECCC-CCHHHHHHHHC-------C----
T ss_conf 9999988998479999960788836999999997----51--46689989997558-97112899967-------9----
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH-HHHHHHH-
Q ss_conf 25504666678899999998980887533456666823475457999866418999816856765310001-1123442-
Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKD-AVEKEHK- 317 (674)
Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~-~v~~e~~- 317 (674)
-.+-|.+..++.-.+|+.----.|.+.+ -+.++.-.-......+||.|++-==. .+=.+.. .+..-.+
T Consensus 71 a~VtGID~S~~~I~~Ar~ha~~~~l~i~--------y~~~~~e~l~~~~~~~FDvV~~~EVl--EHV~d~~~~l~~~~rl 140 (233)
T PRK05134 71 ATVTGIDASEENIEVARLHALESGLKID--------YRQITAEELAAEHPGQFDVVTCMEML--EHVPDPASFIRACAKL 140 (233)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCE--------EEECCHHHHHHHCCCCEEEEEEEHHH--HHCCCHHHHHHHHHHH
T ss_conf 9799987998999999998564434511--------67514766543057863477442147--7538999999999997
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CCCCCCCCCHHHHHHHHHHCCCEEEEEECC
Q ss_conf 26666535777747706599999999961466578807999738971---347764432689999998849468883176
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP---LFNGRAGSGESEIRRWLLENDLIEAIVALP 394 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~---LF~G~agsGEs~IRk~lie~d~ieaII~LP 394 (674)
..+.|++-..++..+--++++---+.-.+ ..+|+.|.- .|- .++++++++-++++- +.--
T Consensus 141 LKPGG~l~lsTiNrt~~S~l~~i~~AEyi---------l~~vP~gTH~w~kFi-----~P~el~~~l~~~~~~---~~~~ 203 (233)
T PRK05134 141 VKPGGLVFFSTLNRNLKSYLLAIVGAEYI---------LRMLPKGTHDYKKFI-----KPSELAAWLRQAGLE---VQDI 203 (233)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHH---------HCCCCCCCCCHHHCC-----CHHHHHHHHHHCCCE---EEEE
T ss_conf 38991499972678989999999999888---------604999985866679-----999999999987995---7210
Q ss_pred CCCCCCCCCCEEEEEEECCC
Q ss_conf 77655788616999994688
Q gi|254780836|r 395 TDLFFRTNIATYLWILSNRK 414 (674)
Q Consensus 395 ~~lFynTgI~t~Iwil~k~K 414 (674)
.+++||-- +.-|.++++-
T Consensus 204 ~G~~ynp~--~~~w~~~~~~ 221 (233)
T PRK05134 204 KGLTYNPL--TNRWKLSDDV 221 (233)
T ss_pred EEEEEECC--CCEEEECCCC
T ss_conf 00799656--7938988999
No 47
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=97.01 E-value=0.0031 Score=40.57 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
-|.|=|-|-.+++|-+++ .++ .+|+|--||||=+-+.|.. + + ...++|.++.|.+..
T Consensus 143 TG~H~TT~lcl~~l~~~~----------~~~--~~vLDvG~GSGILaIaA~k-l---G-------a~~v~a~DiD~~Av~ 199 (298)
T PRK00517 143 TGTHPTTRLCLEWLEKLV----------LPG--KTVLDVGCGSGILAIAAAK-L---G-------AKPVLAIDIDPQAVE 199 (298)
T ss_pred CCCCHHHHHHHHHHHHHC----------CCC--CEEEEECCCCHHHHHHHHH-C---C-------CCEEEEEECCHHHHH
T ss_conf 777747999999998435----------468--8688715770699999997-4---9-------984999989899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 99999898088753345666682347545799986641899981685
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPP 300 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPP 300 (674)
.|+-|+-+.++... ..+..++ ......+||+|+||==
T Consensus 200 ~a~eN~~lN~v~~~------~~~~~~~----~~~~~~~~DlvvANIl 236 (298)
T PRK00517 200 AARENAELNGVDDR------LELYLPE----DQPLEGKADVIVANIL 236 (298)
T ss_pred HHHHHHHHCCCCCC------EEEECCC----CCCCCCCCCEEEEECC
T ss_conf 99999998699842------6896166----4344676468997315
No 48
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=96.97 E-value=0.0025 Score=41.20 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
|+--|-.-+-++|-... .-....|.|-.||||.|=.+|..+ .+ -.++-.|.|..+..+++.|
T Consensus 24 T~~rvrEalFniL~~~~-------~i~~~~~LDLFaGSGslglEAlSR------GA-----~~v~fvE~~~~a~~~i~~N 85 (181)
T pfam03602 24 TTDRVREALFNILAPYF-------ELGGARVLDLFAGSGALGLEALSR------GA-----SSVVFVEKDKKAVATLKEN 85 (181)
T ss_pred CCHHHHHHHHHHHCCCC-------CCCCCEEEECCCCCCHHHHHHHHC------CC-----CEEEEEECCHHHHHHHHHH
T ss_conf 84889999997501345-------548987998278726989999976------99-----8899996999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 89808875334566668234754--57999866418999816856765
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
+-.-+.... .+...+. +..-.....+||+|.+.|||+.+
T Consensus 86 ~~~l~~~~~-------~~~~~~~~~~~~~~~~~~~fdiIF~DPPY~~~ 126 (181)
T pfam03602 86 LEALGLEGA-------VLRMDAARALLRLAGKGPPFDLVFLDPPYAKG 126 (181)
T ss_pred HHHHCCCCE-------EEECCHHHHHHHHCCCCCCCCEEECCCCCCCH
T ss_conf 998589977-------99810899998753357888766359975420
No 49
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=96.92 E-value=0.0021 Score=41.62 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=39.0
Q ss_pred CCCCCHH--HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 7536817--99999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 175 EDFMTPR--DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 175 GeffTPR--~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
..|-||. ++++.++.+. ..+| ..|+||.||||.-+++|.+- + -...|.|++++-+
T Consensus 160 ~~hpt~kP~~L~~~~I~~~---------s~~g--d~VlDpF~GSGTT~~Aa~~l----~--------R~~iG~E~~~~y~ 216 (221)
T pfam01555 160 GAHPTQKPEALLERLILAS---------TNPG--DIVLDPFAGSGTTGAAAKEL----G--------RNFIGIEIEEEYV 216 (221)
T ss_pred CCCCCCCCHHHHHHHHHHC---------CCCC--CEEEECCCCCHHHHHHHHHH----C--------CEEEEEECCHHHH
T ss_conf 7889989599999999970---------9997--99998999827999999982----9--------9599995899999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780836|r 253 AVCV 256 (674)
Q Consensus 253 aIak 256 (674)
.+|+
T Consensus 217 ~~a~ 220 (221)
T pfam01555 217 EIAK 220 (221)
T ss_pred HHHH
T ss_conf 9961
No 50
>COG0827 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.011 Score=37.00 Aligned_cols=199 Identities=19% Similarity=0.252 Sum_probs=104.8
Q ss_pred CCCCHHHHHHHHH-HHHCCCCCHHCCCCCCCCEEECCCCCCH-HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 5368179999999-9731784011013877640311766540-4689999999998531005333225504666678899
Q gi|254780836|r 176 DFMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGT-GGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 176 effTPR~Vi~Lmv-~ll~~~~~~~~~~~p~~~~tIyDPaCGT-GGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
+..||.++.-+|. +.+... +...+..-.|+.|||+|. |+.+..+...+...+ ....-+|-|.++.--.
T Consensus 126 ~~~~p~~~~~~~~~~~~~~~----~~~~~~~e~t~~~~~~~~~~~~f~~~~~~~~~~~------~~~~~~~~e~~~~l~~ 195 (381)
T COG0827 126 QLITPDEIGLLIDYDEILEE----FKANDKREITILDFCSGDFGNLFQTVILNLVKKG------LKLDNFGKEVDDLLIK 195 (381)
T ss_pred EEECHHHHHHHHHHHHHHHH----HHHCCCCCEEEECHHHCCCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_conf 01151888888659999999----9725344415403432342013268887642655------5443000331478888
Q ss_pred HHH-HHHHHH---CCCCCCCCCCCCCCCCCCCCCCCCC-------CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 999-998980---8875334566668234754579998-------66418999816856765310001112344226666
Q gi|254780836|r 254 VCV-AGMLIR---RLESDPRRDLSKNIQQGSTLSKDLF-------TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 (674)
Q Consensus 254 Iak-~nMli~---g~~~d~~~~~~~NI~~GdTL~~d~~-------~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~ 322 (674)
.|. +.-++. .+.. ...+..|-|..+..+ .-..||+-+.+||+-. ...
T Consensus 196 ~~~~~~~~~~~~~~l~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Pig~~~~~~----------------~~~ 253 (381)
T COG0827 196 LALLTAYFLELQQILKE------VDAVKVGITGRNSYFLGPKANSDIVIFDLPIGFYPNDL----------------AAK 253 (381)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCCHH----------------HHH
T ss_conf 87757779999874214------65410032343023214555677368853656776045----------------423
Q ss_pred CCCCCCCC--CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 53577774--7706599999999961466578807999738971347764432689999998849468883176776557
Q gi|254780836|r 323 RFGPGLPK--ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 (674)
Q Consensus 323 Rf~~glP~--~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn 400 (674)
||.. .|. ..-...+|+...+.+.+ ..+|++..|-|-+ +|+..+. ...++.|+=..-.+.+.+.||.++|+.
T Consensus 254 ~f~~-~~~~~~~~~h~~~iE~~~~~~~---k~~~~~~fl~p~~-~~~~~~~--~~~l~~f~~~~~~l~~~~~lp~~if~~ 326 (381)
T COG0827 254 RFDL-EPNDGHLLAHILFIEQSLLHLK---KPGGYAIFLAPKD-LFNKNAS--TQKLNIFIDKKADLFANSELPGGIFKL 326 (381)
T ss_pred HHCC-CCCCCHHHHHHHHHHHHCCCCC---CCCCCEEEECCHH-HHCCHHH--HHHHHHHHCCCHHHHHHHHCCHHHHCC
T ss_conf 3125-5677327779999986413356---8875479971146-4164146--768998737502201164478244135
Q ss_pred CCCCEEEEEEECC
Q ss_conf 8861699999468
Q gi|254780836|r 401 TNIATYLWILSNR 413 (674)
Q Consensus 401 TgI~t~Iwil~k~ 413 (674)
-.=.-.||+|.++
T Consensus 327 ~~~~~sv~~l~~~ 339 (381)
T COG0827 327 EKGEKSVLDLQKK 339 (381)
T ss_pred CCCCCCEEEEECC
T ss_conf 6557727885246
No 51
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=96.85 E-value=0.012 Score=36.64 Aligned_cols=101 Identities=19% Similarity=0.262 Sum_probs=52.3
Q ss_pred HHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 99999997317840110138776403117665404689999999998531005333225504666678899999998980
Q gi|254780836|r 183 VVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR 262 (674)
Q Consensus 183 Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~ 262 (674)
.|+-+.+||.......+ ..+...+++|--||.-... -+-+.... .-++.|-|+++.+...|+.|.-..
T Consensus 97 YIh~iaDLL~~~~~~~~--p~g~~v~gLDIGtGAncIY--------PLLG~~~y--gW~fvgtDId~~sl~~A~~~v~~N 164 (326)
T PRK11727 97 YIHHLADLLAEDNSGVI--PKGANVRVLDIGVGANCIY--------PIIGVQEY--GWRFVGSDIDPQALASAQAIISAN 164 (326)
T ss_pred HHHHHHHHHCCCCCCCC--CCCCCCEEEECCCCCCEEE--------EECCCEEC--CCEEEEECCCHHHHHHHHHHHHHC
T ss_conf 99999998611366778--8888723675056743112--------10143001--763799617989999999999848
Q ss_pred -CCCCCCCCCCCCCCCC---CC---CCCCCCCCCCEEEEEEECCCCCC
Q ss_conf -8875334566668234---75---45799986641899981685676
Q gi|254780836|r 263 -RLESDPRRDLSKNIQQ---GS---TLSKDLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 263 -g~~~d~~~~~~~NI~~---Gd---TL~~d~~~~~kFD~vlaNPPFg~ 303 (674)
++. ..|.. .+ -|..--.++++||+.|+||||=.
T Consensus 165 ~~L~--------~~I~lr~q~~~~~If~gii~~~e~fdftmCNPPF~~ 204 (326)
T PRK11727 165 PGLN--------GAIRLRLQKDSKAIFKGIIHKNERFDLTLCNPPFHA 204 (326)
T ss_pred CCCC--------CCEEEEECCCHHHHHCCCCCCCCEEEEEECCCCCCC
T ss_conf 2010--------527999627867653245887665777851898767
No 52
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.77 E-value=0.0092 Score=37.50 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 43899999999986227-66575368179999999973178401101387764031176654046899999999985310
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSH 233 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~-~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~ 233 (674)
.-.+|+-+..++--.+. =..|.|.+=|.. ++.++ ..+++.+|.|-|||||-|.....+.+.
T Consensus 13 v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~---~i~~~----------~~~~g~~vLDva~GTGd~a~~~~k~~g----- 74 (238)
T COG2226 13 VQKVFDKVAKKYDLMNDLMSFGLHRLWRRA---LISLL----------GIKPGDKVLDVACGTGDMALLLAKSVG----- 74 (238)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHH---HHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHCC-----
T ss_conf 999987657788754212037403999999---99860----------789998799966873199999999658-----
Q ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHH
Q ss_conf 05333225504666678899999998980887533456666823475457999866418999816856765310001112
Q gi|254780836|r 234 HKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVE 313 (674)
Q Consensus 234 ~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~ 313 (674)
...+.|-++|+.+-++++--.-=.|.. .-....||...=| |++..||++.+. ||..+=.+.+.+-
T Consensus 75 -----~g~v~~~D~s~~ML~~a~~k~~~~~~~-------~i~fv~~dAe~LP-f~D~sFD~vt~~--fglrnv~d~~~aL 139 (238)
T COG2226 75 -----TGEVVGLDISESMLEVAREKLKKKGVQ-------NVEFVVGDAENLP-FPDNSFDAVTIS--FGLRNVTDIDKAL 139 (238)
T ss_pred -----CCEEEEEECCHHHHHHHHHHHHCCCCC-------CEEEEEECHHHCC-CCCCCCCEEEEE--EHHHCCCCHHHHH
T ss_conf -----844999979999999999874324766-------3279970565498-888765889865--1235278789999
Q ss_pred HHHH--CCCCCCCC
Q ss_conf 3442--26666535
Q gi|254780836|r 314 KEHK--NGELGRFG 325 (674)
Q Consensus 314 ~e~~--~~~~~Rf~ 325 (674)
.|.. ..+.||+.
T Consensus 140 ~E~~RVlKpgG~~~ 153 (238)
T COG2226 140 KEMYRVLKPGGRLL 153 (238)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99987626874999
No 53
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.76 E-value=0.03 Score=34.13 Aligned_cols=164 Identities=13% Similarity=0.165 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHH-HHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 368179999999-9731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 177 FMTPRDVVHLAT-ALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 177 ffTPR~Vi~Lmv-~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
+||.++..-.++ .++ .|..+.+|.|.|||-||=-+.. .+.... ..+...|+++.-....
T Consensus 226 ~~~VQD~aSql~~~ll----------~p~~g~~VLD~CAaPGGKt~~l----a~~~~~------~~v~A~D~~~~Rl~~l 285 (428)
T PRK10901 226 WVTVQDASAQGCVTLL----------APQNGEHILDLCAAPGGKTTHI----LEVAPE------AQVLAVDIDEQRLSRV 285 (428)
T ss_pred EEEEECHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHH----HHHCCC------CCEEEEECCHHHHHHH
T ss_conf 1898172767899864----------9888987987168876689999----996458------9289996988899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC---CCCC
Q ss_conf 9998980887533456666823475457999-86641899981685676531000111234422666653577---7747
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDL-FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG---LPKI 331 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~-~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g---lP~~ 331 (674)
+-||---|++. ++..+|....+. ..+.+||.||...|-+-. + +- ...++.||.-. +..-
T Consensus 286 ~~n~~Rlg~~~--------~v~~~d~~~~~~~~~~~~fD~ILlDaPCSg~-G-----~l---rR~Pdikw~~~~~di~~l 348 (428)
T PRK10901 286 YDNLKRLGMKA--------TVKQGDGRYPSQWCGEQQFDRILLDAPCSAT-G-----VI---RRHPDIKWLRRDRDIAEL 348 (428)
T ss_pred HHHHHHCCCCE--------EEEECCCCCHHHHCCCCCCCEEEECCCCCCC-E-----EE---CCCCCHHHCCCHHHHHHH
T ss_conf 99999759973--------9997765572331344567879975898887-2-----44---468542112899999999
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 7065999999999614665788079997389713477644326899999988494
Q gi|254780836|r 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674)
Q Consensus 332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674)
..=|..-|.+....+++ ||+++-.. -+|+.- -+|..|++.|=++.-
T Consensus 349 ~~lQ~~iL~~a~~~lk~----gG~LvYsT--CSi~~e---ENe~~I~~FL~~~~d 394 (428)
T PRK10901 349 AQLQSEILDAIWPHLKS----GGTLVYAT--CSVLPE---ENSQQIKAFLQRTPD 394 (428)
T ss_pred HHHHHHHHHHHHHHCCC----CCEEEEEE--CCCCHH---HHHHHHHHHHHHCCC
T ss_conf 99999999999986688----98899998--999957---789999999985999
No 54
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.67 E-value=0.048 Score=32.80 Aligned_cols=182 Identities=19% Similarity=0.196 Sum_probs=102.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf 76657536817999999997317840110138776403117665404689999999998531005333225504666678
Q gi|254780836|r 171 SEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674)
Q Consensus 171 ~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674)
+...|=|---|+..+.+.+++ + +.+|+|-+|=||||=+.|.. + .+ -...+.+++..
T Consensus 196 g~kTGfFlDqR~~R~~l~~~~----------~---GkrvLNlFsYTGgfsv~Aa~-----g-GA-----~~vt~VD~S~~ 251 (393)
T COG1092 196 GLKTGFFLDQRDNRRALGELA----------A---GKRVLNLFSYTGGFSVHAAL-----G-GA-----SEVTSVDLSKR 251 (393)
T ss_pred CCCCEEEHHHHHHHHHHHHHC----------C---CCEEEEECCCCCHHHHHHHH-----C-CC-----CCEEEEECCHH
T ss_conf 420045287679999986131----------6---87678864667699999986-----6-99-----71489826578
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEEEEEECCC-CCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 899999998980887533456666823475457---99986641899981685-67653100011123442266665357
Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS---KDLFTGKRFHYCLSNPP-FGKKWEKDKDAVEKEHKNGELGRFGP 326 (674)
Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~---~d~~~~~kFD~vlaNPP-Fg~~Wk~~~~~v~~e~~~~~~~Rf~~ 326 (674)
.-..|+-|+-+.|++.+.+ .+..+|.+. .-.-.+.+||+|+..|| |+.+ ++....+.+.+.
T Consensus 252 al~~a~~N~~LNg~~~~~~-----~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~-k~~~~~~~rdy~--------- 316 (393)
T COG1092 252 ALEWARENAELNGLDGDRH-----RFIVGDVFKWLRKAERRGEKFDLIILDPPSFARS-KKQEFSAQRDYK--------- 316 (393)
T ss_pred HHHHHHHHHHHCCCCCCCE-----EEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCC-CCCCHHHHHHHH---------
T ss_conf 9999999998629971010-----5672239999999985599556899788100358-210053898999---------
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEE---ECCCCCCCCCCC
Q ss_conf 77747706599999999961466578807999738971347764432689999998849468883---176776557886
Q gi|254780836|r 327 GLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIV---ALPTDLFFRTNI 403 (674)
Q Consensus 327 glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII---~LP~~lFynTgI 403 (674)
.+ +...+.-|+| ||.+ ++.+.|..|.-+. =-..|++-....+.-..+| .+|.+-=.++++
T Consensus 317 --------~l--~~~~~~lL~p----gG~l-~~~s~~~~~~~~~--f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~~~ 379 (393)
T COG1092 317 --------DL--NDLALRLLAP----GGTL-VTSSCSRHFSSDL--FLEIIARAAAAAGRRAQEIEGEGQPPDHPRNAQI 379 (393)
T ss_pred --------HH--HHHHHHHCCC----CCEE-EEEECCCCCCHHH--HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf --------99--9999997079----9689-9993677669899--9999999998648757996146789876543468
Q ss_pred CEEEE
Q ss_conf 16999
Q gi|254780836|r 404 ATYLW 408 (674)
Q Consensus 404 ~t~Iw 408 (674)
|-+.+
T Consensus 380 ~~~~y 384 (393)
T COG1092 380 PETLY 384 (393)
T ss_pred CCHHE
T ss_conf 53021
No 55
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=96.64 E-value=0.0031 Score=40.54 Aligned_cols=166 Identities=18% Similarity=0.203 Sum_probs=95.5
Q ss_pred CCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 57536-81799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
.+-|| +-+.+...|++.+. +.+ .+....+|+|--||+|.|=....+ .. -.++|.|.++.+.
T Consensus 268 p~sFfQvN~~~ae~L~~~a~----~~l--~~~~~~~VlDLYcGvGtfsl~LA~-------~~-----~~V~gvE~~~~av 329 (440)
T PRK13168 268 PTDFIQVNAQVNQKMVARAL----EWL--DPQPGDRVLDLFCGLGNFTLPLAR-------QA-----AEVVGVEGVPAMV 329 (440)
T ss_pred CCCEEEECHHHHHHHHHHHH----HHH--CCCCCCEEEEEECCCCCCCHHHHH-------CC-----CEEEEEECCHHHH
T ss_conf 99878659999999999999----985--267898899862385621111353-------06-----7688760579999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
.-|+.|.-+.|++.- ....||. |..-.....+||.|+.+||= -| +
T Consensus 330 ~~A~~Na~~n~i~n~-------~f~~~d~~~~l~~~~~~~~~~D~vi~DPPR----------------------~G--~- 377 (440)
T PRK13168 330 ERARENARRNGLDNV-------TFYHANLFEDFTDQPWAKGGFDKVLLDPPR----------------------AG--A- 377 (440)
T ss_pred HHHHHHHHHCCCCCC-------EEEECCHHHHHHHHHHHCCCCCEEEECCCC----------------------CC--H-
T ss_conf 999999997499987-------899746456635578637999989999885----------------------27--8-
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf 4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL 407 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I 407 (674)
--.+.. |.++++ -|++-|- |-++|- ..++ .|.+.+| |+.| -|=+||-+|.===+|
T Consensus 378 ------~~~i~~-l~~~~p-----~~IvYVSCnPaTlA--------RDl~-~L~~~GY~l~~i--~~vDmFP~T~HvE~v 434 (440)
T PRK13168 378 ------FEVMQA-LAKLKP-----KRIVYVSCNPATLA--------RDAG-VLVEAGYRLKRA--GVLDMFPHTGHVESM 434 (440)
T ss_pred ------HHHHHH-HHHCCC-----CEEEEECCCHHHHH--------HHHH-HHHHCCCEEEEE--EEEECCCCCCEEEEE
T ss_conf ------999999-984798-----97999938989999--------9999-998789489599--996069999838999
Q ss_pred EEEEC
Q ss_conf 99946
Q gi|254780836|r 408 WILSN 412 (674)
Q Consensus 408 wil~k 412 (674)
-+|++
T Consensus 435 all~R 439 (440)
T PRK13168 435 ALFER 439 (440)
T ss_pred EEEEE
T ss_conf 99983
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=96.60 E-value=0.012 Score=36.75 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=67.8
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
.|.|--||+|+.+....+. .+ ...+.|.++++...+.|+...--.|.... -.+..||.... .|
T Consensus 2 rVLDiGCG~G~~~~~LA~~----~p------~~~v~GvDiS~~~ie~Ar~r~~~~gl~~r------v~~~~~Da~~l-pf 64 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER----HP------HLQLHGYTISPEQAEVGRERIRALGLQGR------IRIFYRDSAKD-PF 64 (224)
T ss_pred EEEEEECCCCHHHHHHHHH----CC------CCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCHHCC-CC
T ss_conf 0899836688889999997----79------98899997999999999999997299865------14785211039-99
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 6641899981685676531000111234422666653577774770659999999996146657880799973
Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
++ +||+|++.=-+. | +|.. -.++..+-..||| ||+..+.=
T Consensus 65 ~d-~FD~V~s~evl~-------------H-----------i~D~----~~~l~ei~RvLKP----GG~lviaD 104 (224)
T smart00828 65 PD-TYDLVFGFEVIH-------------H-----------IKDK----MDLFSNISRHLKD----GGHLVLAD 104 (224)
T ss_pred CC-CCCEEEHHHHHH-------------C-----------CCCH----HHHHHHHHHHCCC----CEEEEEEE
T ss_conf 99-835676853576-------------5-----------3999----9999999987179----84999998
No 57
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=96.57 E-value=0.0034 Score=40.30 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999731784011013877640311766540468999999999853100533322550466667889999999898088
Q gi|254780836|r 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 (674)
Q Consensus 185 ~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~ 264 (674)
+++.+++ .|+ ..|.|--||.|.+|- ++++ . .....||.|++++..+.|.. +|+
T Consensus 5 ~iI~~~I----------~~~--srVLDlGCG~G~ll~----~L~~---~----k~v~~~GvEid~~~v~~a~~----kg~ 57 (193)
T pfam07021 5 RYIARLI----------PPG--SRVLDLGCGDGSLLY----LLQE---E----KQVDGRGIELDAAGVAECVA----KGL 57 (193)
T ss_pred HHHHHHC----------CCC--CEEEEECCCCCHHHH----HHHH---C----CCCCEEEECCCHHHHHHHHH----CCC
T ss_conf 9999865----------896--989983688989999----9987---6----69876983389999999986----479
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECC
Q ss_conf 7533456666823475457-9998664189998168
Q gi|254780836|r 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNP 299 (674)
Q Consensus 265 ~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNP 299 (674)
+ +..||-=. -..|++..||+|+..=
T Consensus 58 ~----------Vi~~D~d~~l~~f~d~sFD~VIls~ 83 (193)
T pfam07021 58 S----------VIQGDADKGLEHFPDKSFDYVILSQ 83 (193)
T ss_pred C----------EECCCHHHCHHHCCCCCCCEEEHHH
T ss_conf 5----------4507744597457767803786987
No 58
>KOG2187 consensus
Probab=96.56 E-value=0.0036 Score=40.19 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999999862276657536-817999999997317840110138776403117665404689999999998531005
Q gi|254780836|r 157 NIYEHLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 (674)
Q Consensus 157 ~iyE~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~ 235 (674)
+|+|+|..-= -.=.+|.|| |--++...+...+ .+... .|.. ..+.|-|||||-+=.+....
T Consensus 343 ~I~E~l~~lt---F~iSp~AFFQ~Nt~~aevLys~i----~e~~~-l~~~-k~llDv~CGTG~iglala~~--------- 404 (534)
T KOG2187 343 YITESLLGLT---FRISPGAFFQTNTSAAEVLYSTI----GEWAG-LPAD-KTLLDVCCGTGTIGLALARG--------- 404 (534)
T ss_pred EEEEECCCEE---EEECCCHHHCCCCHHHHHHHHHH----HHHHC-CCCC-CEEEEEEECCCCEEHHHHCC---------
T ss_conf 7773007768---99776314114708889999999----99708-9988-47998630688400001026---------
Q ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 3332255046666788999999989808875334566-66823475457999866418999816856
Q gi|254780836|r 236 IPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDL-SKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 236 ~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~-~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
...++|.|+++++..=|+-|-.+.|+..-....+ ++++ ..+|-.+.+.... =+++.+||=
T Consensus 405 ---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~--~~sl~~~~~~~~~-~v~iiDPpR 465 (534)
T KOG2187 405 ---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL--FPSLLTPCCDSET-LVAIIDPPR 465 (534)
T ss_pred ---CCCEEEEECCHHHCCHHHHCCHHCCCCCCEEEECCHHHC--CCHHCCCCCCCCC-EEEEECCCC
T ss_conf ---661210233845444355400115865402430642001--5012056788875-689978886
No 59
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=96.52 E-value=0.031 Score=34.09 Aligned_cols=117 Identities=16% Similarity=0.215 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674)
Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674)
.|....|+..|- +.....|.|--||||. |+.. +.+.-+. .++.|.+.++++.+.|+...
T Consensus 17 ~rp~~DLl~~l~-----------~~~~~~vlDlGCG~G~-~t~~---l~~r~p~------a~v~GiD~S~~Ml~~Ar~~~ 75 (252)
T PRK01683 17 TRPAVELLARVP-----------LENVEYVADLGCGPGN-STAL---LHQRWPA------ARITGIDSSPAMLAEARQAL 75 (252)
T ss_pred HCHHHHHHHCCC-----------CCCCCEEEEECCCCCH-HHHH---HHHHCCC------CEEEEEECCHHHHHHHHHHC
T ss_conf 463999984188-----------8899989993774989-9999---9997799------87999989899999999758
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98088753345666682347545799986641899981685676531000111234422666653577774770659999
Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674)
Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674)
-+ .....||.-.-+ +...||.|+||--+ -|=.+. -..+
T Consensus 76 --~~----------~~f~~~D~~~~~--~~~~~D~ifSNaal--hW~~d~--------------------------~~~~ 113 (252)
T PRK01683 76 --PD----------CQFVEADIRNWQ--PEQALDLIYANASL--QWLPDH--------------------------YELF 113 (252)
T ss_pred --CC----------CEEEECCHHCCC--CCCCCCEEEEEEEH--HHCCCH--------------------------HHHH
T ss_conf --99----------838725042078--76787889561004--507877--------------------------9999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 999996146657880799973897
Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVLSSS 363 (674)
Q Consensus 340 qh~i~klk~~~~~ggr~aIV~ngs 363 (674)
.++...|+| ||+.|+-++|.
T Consensus 114 ~~~~~~L~P----GG~la~Q~p~n 133 (252)
T PRK01683 114 PHLVSLLAP----QGVLAVQMPDN 133 (252)
T ss_pred HHHHHHCCC----CCEEEEECCCC
T ss_conf 999982487----87999988987
No 60
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.44 E-value=0.021 Score=35.21 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=64.7
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
+-|-|=|-+--++++-+++ . ..++|.|--||||=+=+.|. .+ + ....+|.++.|.+.
T Consensus 142 GTG~HpTT~lcL~~Le~~~----------~--~g~~vlDvGcGSGILaIAa~-kL-------G---A~~v~g~DiDp~AV 198 (300)
T COG2264 142 GTGTHPTTSLCLEALEKLL----------K--KGKTVLDVGCGSGILAIAAA-KL-------G---AKKVVGVDIDPQAV 198 (300)
T ss_pred CCCCCHHHHHHHHHHHHHH----------C--CCCEEEEECCCHHHHHHHHH-HC-------C---CCEEEEECCCHHHH
T ss_conf 7887801799999999860----------5--89879982678159999999-81-------9---86689971888999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 99999989808875334566668234754579998664189998168
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674)
..|+-|..+.++... .....++.+. .-.+.+||+|+||=
T Consensus 199 ~aa~eNa~~N~v~~~------~~~~~~~~~~--~~~~~~~DvIVANI 237 (300)
T COG2264 199 EAARENARLNGVELL------VQAKGFLLLE--VPENGPFDVIVANI 237 (300)
T ss_pred HHHHHHHHHCCCCHH------HHCCCCCCHH--HCCCCCCCEEEEHH
T ss_conf 999999997699602------2003456300--01368656898605
No 61
>PRK11524 putative methyltransferase; Provisional
Probab=96.42 E-value=0.0062 Score=38.62 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=23.9
Q ss_pred CCCCCCCCCC-CCCCCCEEEEEEECCCCCC
Q ss_conf 8234754579-9986641899981685676
Q gi|254780836|r 275 NIQQGSTLSK-DLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 275 NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~ 303 (674)
.|.+||+|.- ...++..+|.|++-|||+.
T Consensus 10 kIy~gDcle~lk~lpd~SIDLIiTDPPYn~ 39 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNI 39 (284)
T ss_pred EEEECCHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 899531899985385577387998999988
No 62
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=96.36 E-value=0.044 Score=33.08 Aligned_cols=157 Identities=15% Similarity=0.141 Sum_probs=87.6
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
+.+|+|-.||||.+=+....+ + ..+.|.++.+...++|+...--.|...+ -+...|| | ++
T Consensus 64 G~rVLDaGCGtG~la~~LA~~--------G----a~V~avDiS~~mi~~A~~Ra~~~g~~~~------v~F~~gD-l-e~ 123 (230)
T PRK07580 64 GLSILDAGCGTGSLSIPLARR--------G----AKVVASDISPQMVEEARERAPEAGLDGN------ITFEVGD-L-ES 123 (230)
T ss_pred CCEEEECCCCCCHHHHHHHHC--------C----CEEEEEECCHHHHHHHHHHHHHHCCCCC------CEEEECC-C-CC
T ss_conf 998988187867879999977--------9----9899983899999999975586278767------5389667-6-54
Q ss_pred CCCCCEEEEEEECCCCC-CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 98664189998168567-65310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r 286 LFTGKRFHYCLSNPPFG-KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPFg-~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674)
. ...||+|++-=-+- .+=..-...+. ..-.-..+++-.-..|.. -+|-++|.|-+|-|. +.|.-.+.+++
T Consensus 124 ~--~G~FD~Vv~mdvLiHYp~~d~~~~l~-~la~~~~~~~ifTfAP~T--~lL~~m~~iGklFP~---~drsp~~~p~~- 194 (230)
T PRK07580 124 L--LGSFDTVVCLDVLIHYPQEDAERMLA-HLASLTRGSLIFTFAPYT--PLLALLHWIGGFFPG---PSRTTRIYPHR- 194 (230)
T ss_pred C--CCCCCCHHHCCCEEECCHHHHHHHHH-HHHHCCCCEEEEEECCCC--HHHHHHHHHHHHCCC---CCCCCCEEECC-
T ss_conf 5--79866023337155457889999999-997255885999968986--999999998643899---99997269738-
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 347764432689999998849468883176776557
Q gi|254780836|r 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR 400 (674)
Q Consensus 365 LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn 400 (674)
|..|++-|-+.+|--+=...=..-||.
T Consensus 195 ---------~~~l~~~l~~~g~~v~r~~ri~~gFY~ 221 (230)
T PRK07580 195 ---------EKGIRRALAEAGFKVVRTERISSGFYF 221 (230)
T ss_pred ---------HHHHHHHHHHCCCEEEECCCCCCCCHH
T ss_conf ---------899999999669867512332561159
No 63
>PRK13699 putative methylase; Provisional
Probab=96.31 E-value=0.006 Score=38.71 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=12.5
Q ss_pred CCCCCCCC-CCCCCCCEEEEEEECCCCCC
Q ss_conf 23475457-99986641899981685676
Q gi|254780836|r 276 IQQGSTLS-KDLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 276 I~~GdTL~-~d~~~~~kFD~vlaNPPFg~ 303 (674)
|.+||.|. -...++..+|.|++.|||++
T Consensus 4 ii~GDcle~l~~lpd~SVDliiTDPPY~~ 32 (227)
T PRK13699 4 FILGNCVDVMARFPDNAVDFILTDPPYLV 32 (227)
T ss_pred EEHHHHHHHHHHCCCCCCCEEEECCCCCC
T ss_conf 43301999995288877297998989988
No 64
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=96.26 E-value=0.035 Score=33.71 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=86.5
Q ss_pred CCCCCHHHHHH-HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 75368179999-99997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 175 EDFMTPRDVVH-LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 175 GeffTPR~Vi~-Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
|.| ..++... +.+.+| .|.++.+|+|-|||-||-.+...+.+ .. ...++..|+++.-..
T Consensus 64 G~~-~vQD~aS~l~~~~L----------~p~~g~~VLD~CAaPGgKt~~la~l~----~~-----~g~i~A~D~~~~Rl~ 123 (277)
T pfam01189 64 GAV-TVQDASSQLDAIAL----------NPQEDEFILDMCAAPGGKTTHIAELM----KN-----EGTVVAVDRNKQRLK 123 (277)
T ss_pred CEE-EEECHHHHHHHHHH----------CCCCCCEEEEECCCCCCHHHHHHHHC----CC-----CCEEEEECCCHHHHH
T ss_conf 179-99880677899971----------88999989883678881699999875----89-----877998379789999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---C
Q ss_conf 9999989808875334566668234754579-99866418999816856765--3100011123442266665357---7
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---G 327 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---g 327 (674)
..+.|+--.|...- .+...|.... +.....+||.||..+|=+-. |... .+.++.. -
T Consensus 124 ~l~~~~~r~g~~~~-------~~~~~d~~~~~~~~~~~~fD~vLvDaPCSg~G~~rr~-----------p~~~~~~~~~~ 185 (277)
T pfam01189 124 RVYANIQRLGVFNI-------IVQEGDARQIDQKLLGGEFDRILLDAPCSGTGVIRRD-----------PDIKWLRREAD 185 (277)
T ss_pred HHHHHHHHCCCCCE-------EEEECCCCCCCCCCCCCCCCEEEECCCCCCCCEECCC-----------CCHHHCCCHHH
T ss_conf 99999997599747-------9996644455743466666579972898898634558-----------53121199999
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 7747706599999999961466578807999738971347764432689999998849468
Q gi|254780836|r 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674)
Q Consensus 328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674)
+.+-+.-|.-.|.+....+++ ||+++-.. -+++. .-+|..|.+.|=++.-.+
T Consensus 186 ~~~l~~~Q~~iL~~a~~~lk~----gG~lvYsT--CSi~~---eENe~vV~~fL~~~~~~~ 237 (277)
T pfam01189 186 IAQLAELQKELLKAAWDLVKP----GGVLVYST--CSVLP---EENEAVIKYFLQKRPDVE 237 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHCC----CCEEEEEE--CCCCH---HHHHHHHHHHHHHCCCCE
T ss_conf 999999999999999997176----99899994--99998---998999999998699989
No 65
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=96.21 E-value=0.053 Score=32.54 Aligned_cols=103 Identities=10% Similarity=0.044 Sum_probs=71.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 27665753681799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
.|.+.|=|+--|+.-+++.++. .| ++|.|-+|=||||=+.|.. + .+ ..+...+++.
T Consensus 101 ~gqktG~flDqR~nR~~~~~~~-----------~g--~rvLn~Fsytg~fsv~A~~-----~-GA-----~~v~~vD~S~ 156 (286)
T pfam10672 101 RNQNFGLFLDMRLGRRWVQENA-----------KG--KNVLNLFAYTCGFSVAAIA-----G-GA-----SQVVNVDMAR 156 (286)
T ss_pred CCCCCEEEHHHHHHHHHHHHHC-----------CC--CCEEEECCCCCHHHHHHHH-----C-CC-----CEEEEEECCH
T ss_conf 5866678342388899999872-----------89--8325311478699999876-----7-98-----7799991988
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CC-CCCCEEEEEEECCCC
Q ss_conf 88999999989808875334566668234754579-99-866418999816856
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK-DL-FTGKRFHYCLSNPPF 301 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~-d~-~~~~kFD~vlaNPPF 301 (674)
..-+.|+.|+-+.|.+...+ .+..+|.+.. .. -...+||+|+..||=
T Consensus 157 ~al~~a~~N~~lN~~~~~~~-----~~~~~D~f~~l~~~~~~~~fD~VilDPPs 205 (286)
T pfam10672 157 GSLSKGRDNHRLNGHDLGRV-----SFLGHDIFKSWGKIKKLGPYDLVIIDPPS 205 (286)
T ss_pred HHHHHHHHHHHHCCCCCCCE-----EEEEEHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 99999999999769995436-----99983099999998617999879987999
No 66
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.19 E-value=0.0086 Score=37.71 Aligned_cols=97 Identities=12% Similarity=0.083 Sum_probs=64.0
Q ss_pred CCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 5368179999--99997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 176 DFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 176 effTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
-||+||-... -|++++ ..+.+|+|+.||-|-|=+.+..+- ...+|..|+||.++.
T Consensus 169 v~Fsprl~~ER~Rva~~v------------~~GE~V~DmFAGVGpfsi~~Ak~g-----------~~~V~A~diNP~A~~ 225 (341)
T COG2520 169 VYFSPRLSTERARVAELV------------KEGETVLDMFAGVGPFSIPIAKKG-----------RPKVYAIDINPDAVE 225 (341)
T ss_pred EEECCCCHHHHHHHHHHH------------CCCCEEEECCCCCCCCHHHHHHCC-----------CCEEEEEECCHHHHH
T ss_conf 487787447899998630------------699889983578654012466547-----------863999945989999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 9999989808875334566668234754579998664189998168567
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674)
..+-|+-+.+...- --+.+||.-.-.... ..||.|++|-|-+
T Consensus 226 ~L~eNi~LN~v~~~------v~~i~gD~rev~~~~-~~aDrIim~~p~~ 267 (341)
T COG2520 226 YLKENIRLNKVEGR------VEPILGDAREVAPEL-GVADRIIMGLPKS 267 (341)
T ss_pred HHHHHHHHCCCCCE------EEEEECCHHHHHHCC-CCCCEEEECCCCC
T ss_conf 99999985576551------567966488850204-6678898389872
No 67
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.012 Score=36.68 Aligned_cols=80 Identities=16% Similarity=0.228 Sum_probs=53.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
..+.|.++|||+|=.+|... .+ ....-.|.|..++++.+-|.-.-+.... ..+..+|.+.--.
T Consensus 45 ~~~LDlFAGSGaLGlEAlSR------GA-----~~~~~vE~~~~a~~~l~~N~~~l~~~~~------~~~~~~da~~~L~ 107 (187)
T COG0742 45 ARVLDLFAGSGALGLEALSR------GA-----ARVVFVEKDRKAVKILKENLKALGLEGE------ARVLRNDALRALK 107 (187)
T ss_pred CEEEEECCCCCHHHHHHHHC------CC-----CEEEEEECCHHHHHHHHHHHHHHCCCCC------EEEEEECHHHHHH
T ss_conf 88999468764768999857------88-----5699996598999999999998487612------5998400899987
Q ss_pred CCCC--EEEEEEECCCCCC
Q ss_conf 8664--1899981685676
Q gi|254780836|r 287 FTGK--RFHYCLSNPPFGK 303 (674)
Q Consensus 287 ~~~~--kFD~vlaNPPFg~ 303 (674)
-.+. .||+|...|||..
T Consensus 108 ~~~~~~~FDlVflDPPy~~ 126 (187)
T COG0742 108 QLGTREPFDLVFLDPPYAK 126 (187)
T ss_pred HCCCCCCCCEEEECCCCCC
T ss_conf 2277885128996899753
No 68
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB; InterPro: IPR011825 This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA .; GO: 0016436 rRNA (uridine) methyltransferase activity, 0016070 RNA metabolic process.
Probab=95.95 E-value=0.011 Score=37.11 Aligned_cols=81 Identities=27% Similarity=0.395 Sum_probs=52.7
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
+..+.|=.||-|||=..+++.+.+. . ...+.+-|.||+++..|=|+-.--+-|++ |+.+. +|-.-
T Consensus 238 ~~~mWDLFCGVGGFgLHCAkalqek---w--~p~~~lTGIEI~~eAIa~A~~SA~~lGl~---------~~~F~-aLDsa 302 (386)
T TIGR02085 238 VKQMWDLFCGVGGFGLHCAKALQEK---W--GPDTQLTGIEIESEAIACAKQSAKILGLE---------NLSFA-ALDSA 302 (386)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH---C--CCCEEEEEEEECHHHHHHHHHHHHHHCHH---------HHHHH-HHHHH
T ss_conf 1103201046541278998987641---5--89704431343778999999999873533---------21045-44579
Q ss_pred CC---CC-CEEEEEEECCCC
Q ss_conf 98---66-418999816856
Q gi|254780836|r 286 LF---TG-KRFHYCLSNPPF 301 (674)
Q Consensus 286 ~~---~~-~kFD~vlaNPPF 301 (674)
.| .. ..=|.||.|||=
T Consensus 303 ~f~~~~~e~~PeLVlVNPPR 322 (386)
T TIGR02085 303 KFATAQAESVPELVLVNPPR 322 (386)
T ss_pred HHHHHHCCCCCCEEEECCCC
T ss_conf 99986236889657767888
No 69
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=95.93 E-value=0.097 Score=30.82 Aligned_cols=196 Identities=15% Similarity=0.142 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
--|.|.+-|++++ .+....+|.|-.||||-+- . .+.+. ...+.|-++++.+-+.|+..
T Consensus 26 ~Q~~~a~~Ll~~l----------~~~~~~~vLDlGcGtG~~t-~---~l~~~--------~~~v~~~Dls~~Ml~~a~~~ 83 (251)
T PRK10258 26 LQRQSADALLAML----------PQRKFTHVLDAGCGPGWMS-R---YWRER--------GSQVTALDLSPPMLAQARQK 83 (251)
T ss_pred HHHHHHHHHHHHC----------CCCCCCCEEEEEEHHHHHH-H---HHHHC--------CCEEEEEECCHHHHHHHHHH
T ss_conf 9999999999736----------6578993999831002789-9---99974--------99699995989999999874
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 89808875334566668234754579998664189998168567653100011123442266665357777477065999
Q gi|254780836|r 259 MLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF 338 (674)
Q Consensus 259 Mli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF 338 (674)
+.. .+...||- ..=.|++..||.|+||--+ -|-.+.. .+
T Consensus 84 ----~~~--------~~~~~~D~-e~Lp~~~~sfDli~S~~~l--qW~~d~~--------------------------~~ 122 (251)
T PRK10258 84 ----DAA--------DHYLAGDI-ESLPLATATFDLAWSNLAV--QWCGNLS--------------------------TA 122 (251)
T ss_pred ----CCC--------HHHHHCHH-HHCCCCCCCCCEEEECCCH--HHCCCHH--------------------------HH
T ss_conf ----863--------34353606-3099987882178550404--5259999--------------------------99
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEC-CC----CCCCCCCCCEEEEEEECC
Q ss_conf 9999996146657880799973897134776443268999999884946888317-67----765578861699999468
Q gi|254780836|r 339 LMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVAL-PT----DLFFRTNIATYLWILSNR 413 (674)
Q Consensus 339 lqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~L-P~----~lFynTgI~t~Iwil~k~ 413 (674)
+..+..-||| ||+.++-..|. + + =.|+|+-.-+-|--..+-.. |. ..+.+.+..-..
T Consensus 123 l~e~~rvLkP----gG~l~fst~g~-----~--t-l~ELr~a~~~vd~~~h~~~f~~~~~~~~~l~~~~~~~~~------ 184 (251)
T PRK10258 123 LRELYRVVRP----GGVVAFTTLVQ-----G--S-LPELHQAWQAVDERPHANRFLPPDAIEQALNGVRYQHHI------ 184 (251)
T ss_pred HHHHHHHCCC----CCEEEEECCCC-----C--C-HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEE------
T ss_conf 9999964589----94999981575-----7--6-899999999831677667889999999998626662466------
Q ss_pred CCCCCCCCEEEEECHHHHHHHHHCCC-------CCCCCCHHHHHHHHHHHHHC
Q ss_conf 87434883899723677657640466-------44206989999999999721
Q gi|254780836|r 414 KTEERRGKVQLINATDLWTSIRNEGK-------KRRIINDDQRRQILDIYVSR 459 (674)
Q Consensus 414 K~~~rkgkV~lIDAs~~~~~~rk~G~-------Kr~~l~~~~i~~Iv~~y~~f 459 (674)
+ .=.+.|=|.......+|+.|- .+..++...+.+....|...
T Consensus 185 ---~-~~~l~f~~~~~lLr~LK~iGa~~~~~~r~~~~~~r~~l~~~~~~y~~~ 233 (251)
T PRK10258 185 ---Q-PITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQ 233 (251)
T ss_pred ---E-EEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf ---7-899975999999999998437887778888997799999999985044
No 70
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=95.93 E-value=0.12 Score=30.25 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=64.0
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682--3475457
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGSTLS 283 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdTL~ 283 (674)
..+|.|=|||||-+...-.+...+....+ ......+-|-|+|+++-++|+--.-=.. ......|| ..||.+.
T Consensus 44 ~~~~LDvA~GTGD~a~~~~k~~~~~~~a~-~~~~~~vtg~D~S~~ML~~a~kk~~~~~-----r~~~~~~~~f~~~dA~~ 117 (242)
T TIGR01934 44 GQKVLDVACGTGDLAIELAKKAGKVGKAA-ETERAKVTGVDFSEEMLEVAKKKAPNEE-----RKALSANVSFIEADAEA 117 (242)
T ss_pred CCCEEEEECCHHHHHHHHHHHCCCCCCCC-CCCCEEEEEEECCHHHHHHHHHHHHHHH-----HHHHHCCCHHEECHHHC
T ss_conf 89778872383999999986357555335-7763378987079889999987413420-----03332164211000550
Q ss_pred CCCCCCCEEEEEEECCCCCCC-CCCCHHHHHHHHH-CCCCCCCCC
Q ss_conf 999866418999816856765-3100011123442-266665357
Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHK-NGELGRFGP 326 (674)
Q Consensus 284 ~d~~~~~kFD~vlaNPPFg~~-Wk~~~~~v~~e~~-~~~~~Rf~~ 326 (674)
=| |++..||++ -==||.- -...++.+++-++ .-+.||+..
T Consensus 118 LP-F~D~sFD~~--TiaFGlRN~~d~~~aL~E~~RVLKpgG~l~i 159 (242)
T TIGR01934 118 LP-FEDNSFDAV--TIAFGLRNVTDIQKALREMYRVLKPGGRLVI 159 (242)
T ss_pred CC-CCCCCEEEE--EEECCCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 87-998624446--6402554746867898773110188987998
No 71
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.91 E-value=0.05 Score=32.71 Aligned_cols=206 Identities=13% Similarity=0.135 Sum_probs=104.8
Q ss_pred CCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 276657536-8179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r 170 VSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 170 ~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
.++.-|||| +-..|++-+|+..- .....+|..--+|+|. ||.. +.+ .. ..+...|+.
T Consensus 12 ~~K~lGQnFL~D~~i~~~Iv~~a~----------~~~~d~VlEIGPG~G~-LT~~---Ll~---~~-----~~v~aiEiD 69 (296)
T PTZ00338 12 FNKKFGQHILKNPLVLDKIVEKAA----------IKPTDTVLEIGPGTGN-LTEK---LLQ---LA-----KKVIAIEID 69 (296)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCHH-HHHH---HHH---CC-----CCEEEEEEC
T ss_conf 898776220589899999999607----------8989957996685429-9999---983---58-----917999948
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 78899999998980887533456666823475457999866418999816856765310001112344226666535777
Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGL 328 (674)
Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~gl 328 (674)
+.....-+-...-.+.. ..-.|..||-|..|. ..||.|++|=||+++=. .+..-.. . .
T Consensus 70 ~~l~~~L~~~~~~~~~~------~n~~ii~~D~Lk~d~---~~~~~vVaNLPY~ISSp----ii~kll~--~-------~ 127 (296)
T PTZ00338 70 PRMVAELKKRFQNSPLA------SKLQVIEGDALKTEF---PYFDVCVANVPYQISSP----LVFKLLS--H-------R 127 (296)
T ss_pred HHHHHHHHHHHHCCCCC------CCCEEECCHHHHCCC---CCCCEEEECCCCHHHHH----HHHHHHH--C-------C
T ss_conf 89999999998514456------673577050531856---41144663587044799----9999985--5-------9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCEEE
Q ss_conf 747706599999999961466578807999738971347764432689999998849468883176776557-8861699
Q gi|254780836|r 329 PKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYL 407 (674)
Q Consensus 329 P~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~t~I 407 (674)
|..+..-++|-.-. +-|++- -||+.-+ | .=|-.-++. .-++-+...|.+.|+- -.+-.+|
T Consensus 128 ~~~~~~vlM~QkEv----------A~Rl~A-~pg~k~Y----g-~LSV~~q~~---~~~~~~~~V~~~~F~P~PkVdSav 188 (296)
T PTZ00338 128 PLFRCAVLMFQKEF----------ALRLLA-QPGDEAY----C-RLSVNTQLL---SRVTHLMKVSKNSFNPPPKVESSV 188 (296)
T ss_pred CCCCCEEEEEHHHH----------HHHHHC-CCCCCCC----C-HHHHHHHHH---CCCCEEEEECHHHCCCCCCCEEEE
T ss_conf 85320356540877----------788844-7898751----3-899999997---075376898744378999840799
Q ss_pred EEEECCCCCCCCCCEEEEECHHHHHHHHHC-CCCCCCC
Q ss_conf 999468874348838997236776576404-6644206
Q gi|254780836|r 408 WILSNRKTEERRGKVQLINATDLWTSIRNE-GKKRRII 444 (674)
Q Consensus 408 wil~k~K~~~rkgkV~lIDAs~~~~~~rk~-G~Kr~~l 444 (674)
.-|..+++.- -+|-..++.-.|.. +.+|+.|
T Consensus 189 v~l~p~~~~~------~~~~~~~~~lvr~~F~~RRKtL 220 (296)
T PTZ00338 189 VRIEPKNPPP------DVDFEEWDGLVRICFSRKNKTL 220 (296)
T ss_pred EEEEECCCCC------CCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999899999------9899999999999972648899
No 72
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=95.75 E-value=0.043 Score=33.13 Aligned_cols=187 Identities=14% Similarity=0.206 Sum_probs=101.4
Q ss_pred HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999862276657536-8179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 (674)
Q Consensus 161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~ 239 (674)
++++.++--..+.-|||| +-..+++-||+.+- ......|..--+|.|. ||.+ +.+.+
T Consensus 4 ~~l~~~~~~~kK~lGQnFL~d~~ii~kIv~~~~----------~~~~d~VlEIGpG~G~-LT~~---Ll~~~-------- 61 (267)
T PRK00274 4 ELLEHYGHRAKKSLGQNFLIDENIIDKIVRAAD----------LQPGDRVLEIGPGLGA-LTEP---LLERA-------- 61 (267)
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC----------CCCCCEEEEECCCCCH-HHHH---HHHHC--------
T ss_conf 999876999887778221489899999999608----------9999907996388888-9999---99626--------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 25504666678899999998980887533456666823475457999--8664189998168567653100011123442
Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL--FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK 317 (674)
Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~--~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~ 317 (674)
..+.+.|+.+.....- +.. ..-+|.+||-|.-|. +.....-.|++|.||++.=. .+..-..
T Consensus 62 ~~v~aiEiD~~l~~~L------~~~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~Iss~----il~~~l~ 124 (267)
T PRK00274 62 AKVTAIEIDRDLAPIL------RET-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYNISTP----LLFKLLE 124 (267)
T ss_pred CCEEEEECCHHHHHHH------HHC-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCHHHHH----HHHHHHH
T ss_conf 8058863688999998------504-------7869996506647867745678727995588303128----9999985
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 26666535777747706599999999961466578807999738971347764432689999998849468883176776
Q gi|254780836|r 318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDL 397 (674)
Q Consensus 318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~l 397 (674)
. .+...++-++| |.=+ +-|++ --+|+--+ |.=|-+=++ -.-++-+-..|++.
T Consensus 125 --~-------~~~~~~~vlmv-QkEv---------A~Ri~-a~p~~k~y-----~~LSv~~q~---~~~~~~~~~V~~~~ 176 (267)
T PRK00274 125 --E-------APPIRDMVLML-QKEV---------AERIV-AKPGSKAY-----GRLSVLLQY---YADVEKVFDVPPSA 176 (267)
T ss_pred --C-------CCCHHHHHHHH-HHHH---------HHHHH-CCCCCCCC-----CHHHHHHHH---HHHEEEEEEECHHH
T ss_conf --4-------75412400111-5877---------77762-47999751-----688999999---86331211576776
Q ss_pred CCC-CCCCEEEEEEECCC
Q ss_conf 557-88616999994688
Q gi|254780836|r 398 FFR-TNIATYLWILSNRK 414 (674)
Q Consensus 398 Fyn-TgI~t~Iwil~k~K 414 (674)
||- ..+-..|.-+..++
T Consensus 177 F~P~PkVdS~vi~l~p~~ 194 (267)
T PRK00274 177 FYPPPKVDSAVVRLVPKE 194 (267)
T ss_pred CCCCCCCEEEEEEEEECC
T ss_conf 567987417999999789
No 73
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.69 E-value=0.041 Score=33.24 Aligned_cols=146 Identities=15% Similarity=0.054 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 68179999999973178401101387764031176654046899999999985310053332255046666788999999
Q gi|254780836|r 178 MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 178 fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
.|.++|--+....| .+.+...|+|--||||+.=+++...+. ....+|..|.+++...+++.
T Consensus 23 mTK~EVRa~~l~~L----------~l~~~~~vwDIGaGsGsvsiEaa~~~~---------~~~~V~aIE~~~e~~~~~~~ 83 (198)
T PRK00377 23 MTKEEIRALALSKL----------RLFKGGKLVDVGCGTGSVSVEAALIVG---------EGGKVYAIDKDELAVELTKK 83 (198)
T ss_pred CCHHHHHHHHHHHH----------CCCCCCEEEEECCCEEHHHHHHHHHCC---------CCCEEEEEECCHHHHHHHHH
T ss_conf 66799999999970----------999989999917703299999999669---------78759999678889999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHH-
Q ss_conf 9898088753345666682347545799986641899981685676531000111234422666653577774770659-
Q gi|254780836|r 258 GMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSM- 336 (674)
Q Consensus 258 nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~- 336 (674)
|+--.|...+ -.+..|+....-.--...+|.|+- | -|.|++
T Consensus 84 N~~kfg~~~n------v~~i~G~ap~~l~~l~p~pD~vFI----G----------------------------G~~g~l~ 125 (198)
T PRK00377 84 NAEKFGVGDN------VVLIEGEAPEVLPKLNPKSDRYFI----G----------------------------GGGEELP 125 (198)
T ss_pred HHHHCCCCCC------EEEEECCHHHHHHCCCCCCCEEEE----E----------------------------CCCCCHH
T ss_conf 9998099988------599952548877208998898999----7----------------------------8877789
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 99999999614665788079997389713477644326899999988494688831
Q gi|254780836|r 337 LFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 (674)
Q Consensus 337 lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~ 392 (674)
-.|....++|++ |||+++ |- ++.. ......+++-+.++---|++
T Consensus 126 ~il~~~~~~L~~----gGriVi--na-Vtle-----t~~~~~~~l~~~~~~~ev~q 169 (198)
T PRK00377 126 EIIQAALEKIGK----GGRIVA--DA-ILLE-----SLNKALSALEELGYKYEVTE 169 (198)
T ss_pred HHHHHHHHHCCC----CCEEEE--EE-ECHH-----HHHHHHHHHHHCCCCCEEEE
T ss_conf 999999985799----989999--83-6298-----89999999997699814999
No 74
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=95.61 E-value=0.081 Score=31.33 Aligned_cols=102 Identities=14% Similarity=0.144 Sum_probs=68.4
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 76657536-81799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
.+.-||+| +-..|++-+|+.+ .+....+|.+--+|.|. ||.. +.+. . ..+...|+++
T Consensus 5 kK~lGQnFL~d~~i~~kIv~~~----------~~~~~d~VlEIGPG~G~-LT~~---L~~~---~-----~~v~aiE~D~ 62 (258)
T pfam00398 5 RRSYGQNFLTNKKVINRIVDKA----------NLQESDTVLEIGPGKGA-LTEE---LAKR---A-----KQVVAIEIDP 62 (258)
T ss_pred CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCHHH-HHHH---HHHC---C-----CCEEEEECCH
T ss_conf 5667753138999999999970----------89999979997996239-9999---9961---6-----9479995447
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
..+..-+....- +..-.|.+||-|.-|.....++ .|++|-||+++
T Consensus 63 ~l~~~L~~~~~~---------~~~~~ii~~D~l~~d~~~~~~~-~vvgNLPY~Is 107 (258)
T pfam00398 63 RLAKRLQKKLAL---------HPNVEVVHQDFLKFSFPKHEPF-LVVGNIPYNIT 107 (258)
T ss_pred HHHHHHHHHHCC---------CCCEEEEECCHHCCCCCCCCCE-EEEECCCCCCC
T ss_conf 799999986442---------8977999663010575457861-68944886341
No 75
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.081 Score=31.32 Aligned_cols=103 Identities=10% Similarity=0.076 Sum_probs=65.9
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 76657536-81799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
++.-|||| +-+.+++-+|+.. .+....+|..--+|.|++= .. +.+ .. -.+...|+.+
T Consensus 5 ~K~~GQnFL~d~~v~~kIv~~a----------~~~~~d~VlEIGpG~GaLT-~~---Ll~---~~-----~~v~aiEiD~ 62 (259)
T COG0030 5 NKRLGQNFLIDKNVIDKIVEAA----------NISPGDNVLEIGPGLGALT-EP---LLE---RA-----ARVTAIEIDR 62 (259)
T ss_pred CCCCCCCCCCCHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HH---HHH---HC-----CEEEEEEECH
T ss_conf 8776645414787999999855----------7899986999789877889-99---996---06-----9579999688
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
....+-+--+- . ...-+|..||-|.-|.-.-.+++.|+||-||+++
T Consensus 63 ~l~~~L~~~~~----~-----~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~Is 108 (259)
T COG0030 63 RLAEVLKERFA----P-----YDNLTVINGDALKFDFPSLAQPYKVVANLPYNIS 108 (259)
T ss_pred HHHHHHHHHHC----C-----CCCEEEEECCHHCCCCHHHCCCCEEEECCCCCCC
T ss_conf 99999997506----5-----6655999472424751351578889980897656
No 76
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=95.36 E-value=0.038 Score=33.51 Aligned_cols=95 Identities=26% Similarity=0.329 Sum_probs=56.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17665404689999999998531005333225504666678899999998980887533456666823475457999866
Q gi|254780836|r 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 (674)
Q Consensus 210 yDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~ 289 (674)
.|-.||+|.++.... +. ....++|.|+++.....|+.+.--.+. +...+|. .+-.+++
T Consensus 1 LDiGcG~G~~~~~l~----~~-------~~~~v~giD~s~~~i~~a~~~~~~~~~----------~~~~~d~-~~~~~~~ 58 (95)
T pfam08241 1 LDVGCGTGLLTEALA----RL-------PGAQVTGVDLSPEMLALARKRAQEDGL----------TFVVGDA-EDLPFPD 58 (95)
T ss_pred CCCCCCCCHHHHHHH----HC-------CCCEEEEEECCHHHHHHHHHHCCCCCC----------EEEEECC-CCCCCCC
T ss_conf 964624999999998----45-------799999994978998776631026694----------7998033-2467554
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 418999816856765310001112344226666535777747706599999999961466578807999
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674)
.+||+|++.--+- | ++ | .-.+++.+...||| ||++.|
T Consensus 59 ~~fD~I~~~~~l~--~----------------------~~---~-~~~~l~~~~r~Lkp----gG~l~i 95 (95)
T pfam08241 59 ESFDVVVSSLVLH--H----------------------LP---D-PERALREIARVLKP----GGKLVI 95 (95)
T ss_pred CCCCEEEECCCHH--H----------------------CC---C-HHHHHHHHHHHCCC----CEEEEC
T ss_conf 5685999833066--4----------------------68---9-99999999987786----949979
No 77
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.33 E-value=0.031 Score=34.07 Aligned_cols=143 Identities=16% Similarity=0.196 Sum_probs=79.3
Q ss_pred HHHHHHHHHCCC-----CCCCCCCCCHHHHHHH----H-HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCC
Q ss_conf 289999874024-----5673337611443899----9-999999862276657536-8179999999973178401101
Q gi|254780836|r 132 LLYKICKNFSGI-----ELHPDTVPDRVMSNIY----E-HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFK 200 (674)
Q Consensus 132 ~L~~vI~~F~~i-----dL~p~~v~n~~mG~iy----E-~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~ 200 (674)
.+..+.+.|..+ .+.+.. .+...|.-- . ..|+.+..-. =.++.|| +-..+..-|.+.+. +.+.
T Consensus 217 ~~~~~~~~~~~~~~i~~~i~~~~-~~~i~g~~~~~~~~~~~i~e~~~~~-~~~~sF~Q~N~~~~ekl~~~a~----~~~~ 290 (432)
T COG2265 217 ALRELLEAFPEIKGIVQNINRAK-TNVIEGDEEITLYGLESIREGVSFQ-ISPRSFFQVNPAVAEKLYETAL----EWLE 290 (432)
T ss_pred HHHHHHHHCCCCEEEEEEECCCC-CCEEECCCCEEEECCCCCCCCEEEE-ECCCCCEEECHHHHHHHHHHHH----HHHH
T ss_conf 99999984111304789951788-7458657423660553442563887-5799741339999999999999----9974
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 38776403117665404689999999998531005333225504666678899999998980887533456666823475
Q gi|254780836|r 201 ESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGS 280 (674)
Q Consensus 201 ~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~Gd 280 (674)
+....+++|--||.|+|=...... ...++|-|+++++-+-|+-|--+.|++.- .+..|+
T Consensus 291 --~~~~~~vlDlYCGvG~f~l~lA~~------------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~-------~f~~~~ 349 (432)
T COG2265 291 --LAGGERVLDLYCGVGTFGLPLAKR------------VKKVHGVEISPEAVEAAQENAAANGIDNV-------EFIAGD 349 (432)
T ss_pred --CCCCCEEEECCCCCCHHHHHHCCC------------CCEEEEEECCHHHHHHHHHHHHHCCCCCE-------EEEECC
T ss_conf --369977999355887013553124------------65799996489999999999997398877-------999586
Q ss_pred CCCC--CCCCCCEEEEEEECCCC
Q ss_conf 4579--99866418999816856
Q gi|254780836|r 281 TLSK--DLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 281 TL~~--d~~~~~kFD~vlaNPPF 301 (674)
.-.- -...+.+||.|+-+||=
T Consensus 350 ae~~~~~~~~~~~~d~VvvDPPR 372 (432)
T COG2265 350 AEEFTPAWWEGYKPDVVVVDPPR 372 (432)
T ss_pred HHHHHHHHCCCCCCCEEEECCCC
T ss_conf 88886510025799989989999
No 78
>TIGR00536 hemK_fam methyltransferase, HemK family; InterPro: IPR004556 The gene hemK from Escherichia coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase . Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity . Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both Escherichia coli and Haemophilus influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=95.21 E-value=0.027 Score=34.48 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred CCCCHHHHHHHHHHHHCC-CCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 536817999999997317-8401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 176 DFMTPRDVVHLATALLLD-PDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 176 effTPR~Vi~Lmv~ll~~-~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
....||.-...++..+.. ....... .+.....+.|-+||||..-+....... . ....+++.++.+...++
T Consensus 97 ~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~d~~~g~g~~~~~~~~~~~-------p-c~~~~~~~d~~~~~~~~ 167 (311)
T TIGR00536 97 GVLIPRPETEELVEKVLLAALASLLS-QPPLPLHILDLGTGSGCIALALAYEFP-------P-CNAEVIAVDLSPDALAL 167 (311)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHC-CCCCCCHHHHCCCCCHHHHHHHHHCCC-------C-CCCEEEEECCCHHHHHH
T ss_conf 51125763789999999998875411-477650111014563156665543046-------6-66226641122367888
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEECCCCCC
Q ss_conf 999989808875334566668234754579998664-1899981685676
Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGK 303 (674)
Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~-kFD~vlaNPPFg~ 303 (674)
+..|+..++.... ..+..++-+..-..... ++|.+++||||-.
T Consensus 168 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~~~~~ppy~~ 211 (311)
T TIGR00536 168 AEENAEKLGLEGR------VELLQSDLLEPLPGLGGPKLDLLVSNPPYID 211 (311)
T ss_pred HHHHHHHHHHHCC------CEEEHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 8876776432012------0010112444332036652236645886544
No 79
>KOG1540 consensus
Probab=95.07 E-value=0.098 Score=30.80 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=87.3
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
.|+..+.+.|-|||||-.-..-.+|+....... ...+.+.++||...+.++---.-+++..+. ..--..||.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~----~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~----~~~w~~~dA 168 (296)
T KOG1540 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDR----ESKVTVLDINPHMLAVGKQRAKKRPLKASS----RVEWVEGDA 168 (296)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCC----CEEEEECCC
T ss_conf 877787589834775256777987611345777----761799938989999998777515977687----169994770
Q ss_pred CCCCCCCCCEEEEEEECCCCCCC-CCCCHHHHHHHHH-CCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 57999866418999816856765-3100011123442-2666653577-7747706599999999961466578807999
Q gi|254780836|r 282 LSKDLFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHK-NGELGRFGPG-LPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674)
Q Consensus 282 L~~d~~~~~kFD~vlaNPPFg~~-Wk~~~~~v~~e~~-~~~~~Rf~~g-lP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674)
-.-| |++..||.... -||.. |-.-++.++.-+. ..+.|||..- .+...+..+.|+-..- +-=.|
T Consensus 169 E~Lp-Fdd~s~D~yTi--afGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~y----------sf~Vl 235 (296)
T KOG1540 169 EDLP-FDDDSFDAYTI--AFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQY----------SFDVL 235 (296)
T ss_pred CCCC-CCCCCCEEEEE--ECCEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHH----------HHHHH
T ss_conf 1089-99775115888--42111478778999999875277867999973545407789999712----------22321
Q ss_pred ECCCCCCCCCCCCCCH
Q ss_conf 7389713477644326
Q gi|254780836|r 359 VLSSSPLFNGRAGSGE 374 (674)
Q Consensus 359 V~ngs~LF~G~agsGE 374 (674)
...| .+-.|+..|++
T Consensus 236 pvlG-~~iagd~~sYq 250 (296)
T KOG1540 236 PVLG-EIIAGDRKSYQ 250 (296)
T ss_pred CHHH-HHHHHHHHHHH
T ss_conf 1055-76652176545
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=95.03 E-value=0.11 Score=30.46 Aligned_cols=69 Identities=20% Similarity=0.080 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
-.|.++|--+...-| .+.+..+++|--||||+.=+++.... ....+|..|.+++..++++
T Consensus 22 PmTK~EVRa~~l~kL----------~l~~~~~vwDIGaGtGsVsiEaa~~~----------~~g~V~AIE~~~~a~~li~ 81 (196)
T PRK07402 22 PLTKREVRLLLISQL----------RLEPDSVLWDIGAGTGTIPVEAALLC----------PKGRVIAIERDEEVANLIR 81 (196)
T ss_pred CCCHHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf 878899999999970----------89999999994788779999999878----------9988999976888999999
Q ss_pred HHHHHHCCC
Q ss_conf 998980887
Q gi|254780836|r 257 AGMLIRRLE 265 (674)
Q Consensus 257 ~nMli~g~~ 265 (674)
.|.--.|..
T Consensus 82 ~N~~rfgv~ 90 (196)
T PRK07402 82 RNCDRFGVK 90 (196)
T ss_pred HHHHHHCCC
T ss_conf 989972999
No 81
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=94.96 E-value=0.14 Score=29.72 Aligned_cols=69 Identities=22% Similarity=0.152 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
-.|.++|--+...-| .+.+...++|--||||+.=+++.... ....+|..|.+++..++.+
T Consensus 12 pmTK~EIRai~LskL----------~l~~~~vvwDIGaGsGsvsiEaa~~~----------p~~~V~AvE~~~~~~~~i~ 71 (186)
T PRK08287 12 PMTKEEVRALSLSKL----------ELHRAKHLIDVGAGTGSVSIEAALQF----------PSLQVTAIERNPAALRLIK 71 (186)
T ss_pred CCCHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHHHHHHHHC----------CCCEEEEEECCHHHHHHHH
T ss_conf 977899999999971----------99999999995788778999999978----------9988999937989999999
Q ss_pred HHHHHHCCC
Q ss_conf 998980887
Q gi|254780836|r 257 AGMLIRRLE 265 (674)
Q Consensus 257 ~nMli~g~~ 265 (674)
.|.--.|.+
T Consensus 72 ~N~~~fg~~ 80 (186)
T PRK08287 72 ENRQRFGCG 80 (186)
T ss_pred HHHHHHCCC
T ss_conf 989972999
No 82
>KOG1270 consensus
Probab=94.89 E-value=0.054 Score=32.48 Aligned_cols=99 Identities=16% Similarity=0.261 Sum_probs=52.1
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
+++|+|-.||+| +|++..-.+ . -++-|.++.+.....|++- +-.++-......-.|.+-++-.++
T Consensus 90 g~~ilDvGCGgG-LLSepLArl---g--------a~V~GID~s~~~V~vA~~h---~~~dP~~~~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270 90 GMKILDVGCGGG-LLSEPLARL---G--------AQVTGIDASDDMVEVANEH---KKMDPVLEGAIAYRLEYEDTDVEG 154 (282)
T ss_pred CCEEEEECCCCC-CCCHHHHHH---C--------CEEEEECCHHHHHHHHHHH---HHCCCHHCCCCCEEEEHHHCCHHH
T ss_conf 864787236755-023235750---8--------8568526559999999875---104903305641463020153321
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9866418999816856765310001112344226666535777747706599999999961466
Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~ 349 (674)
...+||.|++---+ ||-.+.. -|+.++.++|+|.
T Consensus 155 --~~~~fDaVvcsevl-------------eHV~dp~---------------~~l~~l~~~lkP~ 188 (282)
T KOG1270 155 --LTGKFDAVVCSEVL-------------EHVKDPQ---------------EFLNCLSALLKPN 188 (282)
T ss_pred --CCCCCCEEEEHHHH-------------HHHHCHH---------------HHHHHHHHHHCCC
T ss_conf --45656454419899-------------9874789---------------9999999984889
No 83
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=94.84 E-value=0.042 Score=33.20 Aligned_cols=95 Identities=17% Similarity=0.182 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 17665404689999999998531005333225504666678899999998980887533456666823475457999866
Q gi|254780836|r 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG 289 (674)
Q Consensus 210 yDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~ 289 (674)
+|-.||||.++....+. .+ ...++|.|+++...+.|+.++--.+.... ..+.. +......++.
T Consensus 1 LDvGcG~G~~~~~l~~~----~~------~~~v~giD~s~~~l~~a~~~~~~~~~~~~------~~~~~-~~~~~~~~~~ 63 (98)
T pfam08242 1 LDIGCGTGTLLRALLEA----LP------GLEYTGVDISPAALEAAAERLAALGLLDA------VRVRL-DVLDAIDLDP 63 (98)
T ss_pred CCCCCCCCHHHHHHHHH----CC------CCEEEEEECCHHHHHHHHHHHHHHCCCCC------HHHEE-ECCCHHHCCC
T ss_conf 98863379999999987----89------98899985988999999999987134531------11000-0000222035
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 418999816856765310001112344226666535777747706599999999961466
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~ 349 (674)
.+||+|+++--+- |= | + .-.+++++...|||.
T Consensus 64 ~~fD~I~~~~vl~--~~----------------------~---~-~~~~l~~~~r~Lkpg 95 (98)
T pfam08242 64 GSFDVVVASNVLH--HL----------------------A---D-PRAVLRNLRRLLKPG 95 (98)
T ss_pred CCCCEEEECCCHH--HC----------------------C---C-HHHHHHHHHHHCCCC
T ss_conf 8988996104177--25----------------------8---9-999999999974999
No 84
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=94.74 E-value=0.18 Score=29.12 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
.|-|=|-. |+.+.+ +.+. .+++..+|.|--||||= |+.|...+- .-.++|.++.|.+..
T Consensus 175 TGtH~TT~----LCLe~L-----~~~d-~k~kh~~viD~GCGSGI-L~IAa~~LG----------a~~~~g~D~DP~Ave 233 (330)
T TIGR00406 175 TGTHPTTS----LCLELL-----EDLD-LKDKHKKVIDVGCGSGI-LSIAALKLG----------AAKVVGIDIDPLAVE 233 (330)
T ss_pred CCCCHHHH----HHHHHH-----HCCC-CCCCCCEEEEECCCHHH-HHHHHHHHH----------HHHEEEECCCHHHHH
T ss_conf 89745789----999987-----4014-77766547871267178-999999751----------231122137728999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCC
Q ss_conf 999998980887533456666823475457-99986641899981685
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNPP 300 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNPP 300 (674)
=++-|+-+.++.... .++.-++.- ..+....++|+|+||==
T Consensus 234 ~~r~N~~lN~v~~~~------~~~~~~~vPe~~~~~e~~~DViVANiL 275 (330)
T TIGR00406 234 SARKNAELNQVSDRL------QVKLENSVPELEQPIEGKADVIVANIL 275 (330)
T ss_pred HHHHHHHHCCCCHHH------HHHHCCCCCCCCCCCCCCCCEEEECCH
T ss_conf 999768745886457------643205787534532256675788002
No 85
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=94.73 E-value=0.077 Score=31.49 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC-------HHCCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 438999999999862276657536817999999997317840-------1101387764031176654046899999999
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD-------ALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~-------~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i 227 (674)
|+||=+.+-++|..+. ..+-|-|-|-=-+.|+=+-+-.+-. +.+...|| .+|.|==|| ||+|++++-+.
T Consensus 30 l~YI~~~~~~~~~~~~-~~~~E~y~P~F~~~lLP~~~~~~l~E~QE~~~~~~~~~~G--~~vLDVGCG-GGlLsE~lAR~ 105 (275)
T TIGR01983 30 LDYIRDTIRKNFKRNP-SPDDEVYVPGFSKDLLPEYVAKPLKEDQESIRDELLKDSG--LRVLDVGCG-GGLLSEPLARL 105 (275)
T ss_pred HHHHHHHHHHHCCCCC-CCCCCEEECCCCHHCCCHHHCCCCHHHHHHHHHHHHCCCC--CEEEEECCC-HHHHHHHHHHC
T ss_conf 7899999986237788-8888156089871117254336701025567763411789--779984278-57888999755
Q ss_pred HHHHHHCCCCCCEE-EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCC---CCCCCCCCCEEEEEEECCCCC
Q ss_conf 98531005333225-5046666788999999989808875334566668234-754---579998664189998168567
Q gi|254780836|r 228 ADCGSHHKIPPILV-PHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-GST---LSKDLFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 228 ~~~~~~~~~~~~~~-lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~-GdT---L~~d~~~~~kFD~vlaNPPFg 302 (674)
+ .. +-|.+...+.-.+||.--.-.++..+ ....|.+ ..| |.+++|...+||+|++==
T Consensus 106 -------G----a~~V~GID~~~~~i~~Ak~Ha~~~~~~~~----~~K~i~Y~~~~~E~l~~~~h~~~~FD~V~~mE--- 167 (275)
T TIGR01983 106 -------G----ANKVTGIDASEENIEVAKLHAKKDPLQEA----LDKKIEYRCTSVEELAEEQHTKKSFDVVTCME--- 167 (275)
T ss_pred -------C----CCEEEEEECHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE---
T ss_conf -------8----84257752117799999988873340233----11114544430788730557841573376432---
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEE--------------E---------E
Q ss_conf 6531000111234422666653577774770659999999996146657880799--------------9---------7
Q gi|254780836|r 303 KKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAA--------------I---------V 359 (674)
Q Consensus 303 ~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~a--------------I---------V 359 (674)
| =||-.+. + .||+++.+.+||. |.+- | |
T Consensus 168 ---------v-lEHV~dp--------------~-~f~~~c~~llkPg----G~lF~STINRt~kS~~~aIvgAEYiLr~v 218 (275)
T TIGR01983 168 ---------V-LEHVPDP--------------Q-AFIKACAQLLKPG----GILFFSTINRTPKSYLLAIVGAEYILRWV 218 (275)
T ss_pred ---------E-EECCCCH--------------H-HHHHHHHHHCCCC----CCEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf ---------0-0002788--------------8-9999999850899----84897300021899999999999985168
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHH----HCCC-EEEEEECCCCCCCC
Q ss_conf 38971347764432689999998----8494-68883176776557
Q gi|254780836|r 360 LSSSPLFNGRAGSGESEIRRWLL----ENDL-IEAIVALPTDLFFR 400 (674)
Q Consensus 360 ~ngs~LF~G~agsGEs~IRk~li----e~d~-ieaII~LP~~lFyn 400 (674)
+.|.==|.--- ..+||.+||- .+++ |..|.+|==|.+.|
T Consensus 219 PKGTH~~~KFi--~P~EL~~~l~d~N~~~~l~~~~~~G~~YnP~~~ 262 (275)
T TIGR01983 219 PKGTHDWEKFI--KPSELTSWLEDDNRSAGLRVKDVKGLVYNPIKN 262 (275)
T ss_pred CCCCCCCCCCC--CHHHHHHHHHHCCCCCCEEEEEECCEEEEECCC
T ss_conf 98724710153--879999998512646764899750507630138
No 86
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.66 E-value=0.14 Score=29.72 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 99999999731784011013877640311766540468999999999853100533322550466667889999999898
Q gi|254780836|r 182 DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLI 261 (674)
Q Consensus 182 ~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli 261 (674)
+.|+-+++||...... .+++...++|--.|.-- |.-+-+.... ...+-|-|+.+.+..-|+|+...
T Consensus 59 dYih~laDLL~s~~g~----~~~~~i~~LDIGvGAnC--------IYPliG~~eY--gwrfvGseid~~sl~sAk~ii~~ 124 (292)
T COG3129 59 DYIHHLADLLASTSGQ----IPGKNIRILDIGVGANC--------IYPLIGVHEY--GWRFVGSEIDSQSLSSAKAIISA 124 (292)
T ss_pred HHHHHHHHHHHHCCCC----CCCCCEEEEEECCCCCC--------CCCCCCCEEE--CCEEECCCCCHHHHHHHHHHHHC
T ss_conf 7999999998743898----77676478850457642--------0021332121--22001574687788888999870
Q ss_pred H-CCCCCCCCCCCCCCCC-----CCCCCCC-CCCCCEEEEEEECCCCCC
Q ss_conf 0-8875334566668234-----7545799-986641899981685676
Q gi|254780836|r 262 R-RLESDPRRDLSKNIQQ-----GSTLSKD-LFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 262 ~-g~~~d~~~~~~~NI~~-----GdTL~~d-~~~~~kFD~vlaNPPFg~ 303 (674)
. +... .|+. -+.+-++ -..+++||++++||||--
T Consensus 125 N~~l~~--------~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 125 NPGLER--------AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred CCCHHH--------HEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCH
T ss_conf 904153--------33677526854341651034433305751898302
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=94.50 E-value=0.27 Score=27.93 Aligned_cols=77 Identities=26% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76403117665404689999999998531005333225504666678899999998980887533456666823475457
Q gi|254780836|r 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 (674)
Q Consensus 204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~ 283 (674)
.++++|+|--||-|||++-|.+.. + ..+.|-.++++-++.|+.-.--.|... ||.. -|.
T Consensus 71 ~~G~~lLDiGCGWG~l~~~aA~~y-------~----v~V~GvTlS~~Q~~~~~~r~~~~gl~~--------~v~v--~l~ 129 (283)
T COG2230 71 KPGMTLLDIGCGWGGLAIYAAEEY-------G----VTVVGVTLSEEQLAYAEKRIAARGLED--------NVEV--RLQ 129 (283)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCC--------CCEE--EEC
T ss_conf 999989874788449999999984-------9----979996689999999999999759976--------6079--965
Q ss_pred CCCCCCCEEEEEEECCCC
Q ss_conf 999866418999816856
Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 284 ~d~~~~~kFD~vlaNPPF 301 (674)
+.....++||.|+|==-|
T Consensus 130 d~rd~~e~fDrIvSvgmf 147 (283)
T COG2230 130 DYRDFEEPFDRIVSVGMF 147 (283)
T ss_pred CCCCCCCCCCEEEEHHHH
T ss_conf 621032434205560068
No 88
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=94.15 E-value=0.46 Score=26.40 Aligned_cols=169 Identities=17% Similarity=0.137 Sum_probs=87.7
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
+|-||---.-+-+-|..+.. .|.++.+|.|-||.-||=-+.....+. . ...+...|+++.-..
T Consensus 90 aG~~yiQe~ssm~~~~~l~~--------~p~pge~VLDlCAAPGGKtt~la~~m~----~-----~G~lvAnd~~~~R~~ 152 (471)
T PRK11933 90 SGLFYIQEASSMLPVAALFA--------DDNAPQRVLDMAAAPGSKTTQIAALMN----N-----QGALVANEYSASRVK 152 (471)
T ss_pred CCEEEEECHHHHHHHHHHCC--------CCCCCCEEEEECCCCCHHHHHHHHHCC----C-----CCEEEEEECCHHHHH
T ss_conf 85499977688557888524--------889999899957785489999999758----9-----966999838899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCC-CCC
Q ss_conf 999998980887533456666823475457999866418999816856765--31000111234422666653577-774
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPG-LPK 330 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~g-lP~ 330 (674)
+-+.|+---|+..- .+...|.-.-.......||.||...|-+-. +.++.+.+ .+|... +..
T Consensus 153 ~L~~n~~r~G~~n~-------~vt~~d~~~~~~~~~~~FD~ILvDaPCSG~G~~rk~p~~~---------~~w~~~~~~~ 216 (471)
T PRK11933 153 VLHANISRCGVSNV-------ALTHFDGRVFGAALPEMFDAILLDAPCSGEGTVRKDPDAL---------KNWSPESNLE 216 (471)
T ss_pred HHHHHHHHCCCCCE-------EEEECCHHHHHHHCCCCCCEEEECCCCCCCEEECCCHHHH---------HCCCHHHHHH
T ss_conf 99999997199847-------9993586674032301066799878888873355597576---------4189879999
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 7706599999999961466578807999738971347764432689999998849
Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEND 385 (674)
Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d 385 (674)
-..-|.-.|.+...-||| ||++ |-.--++. ..-.| .+=.|++++.
T Consensus 217 ~~~~Q~~iL~~A~~~Lkp----GG~L--VYSTCT~~---peENE-~vv~~~l~~~ 261 (471)
T PRK11933 217 IAATQRELIESAFHALKP----GGTL--VYSTCTLN---REENQ-AVCLWLKETY 261 (471)
T ss_pred HHHHHHHHHHHHHHHCCC----CCEE--EEECCCCC---HHHHH-HHHHHHHHHC
T ss_conf 999999999999987388----9689--99817999---56679-9999999868
No 89
>PRK05785 hypothetical protein; Provisional
Probab=93.56 E-value=0.19 Score=28.86 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=41.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.+|.|-|||||-+.. .+ ++. ..+.|.++++.+-.+++.. . + . ..||.. .=+
T Consensus 53 ~~vLDva~GTGd~a~----~l---~~~------~~v~~~D~s~~ML~~a~~~----~---~-------~-v~~~ae-~LP 103 (225)
T PRK05785 53 LKVLDAGAGPGNMAY----HL---RKI------RYVVALDYTEEMLRLNLVA----D---D-------K-VVGSFE-AMP 103 (225)
T ss_pred CEEEEECCCCHHHHH----HH---HCC------CEEEEEECCHHHHHHHHHC----C---C-------C-EEEHHH-HCC
T ss_conf 828995688439999----96---347------8699998899999987643----2---1-------1-373185-399
Q ss_pred CCCCEEEEEEECCCCCCC
Q ss_conf 866418999816856765
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~ 304 (674)
|++..||.|.+- ||..
T Consensus 104 f~d~sFD~vt~~--FglR 119 (225)
T PRK05785 104 FRDKSFDLVMSG--YALH 119 (225)
T ss_pred CCCCCEEEEEEE--EEEE
T ss_conf 998825277634--4300
No 90
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=93.49 E-value=0.42 Score=26.68 Aligned_cols=205 Identities=18% Similarity=0.229 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH
Q ss_conf 17999999997317840110138776403117665404689999999998531005333225504666678899999998
Q gi|254780836|r 180 PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGM 259 (674)
Q Consensus 180 PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nM 259 (674)
-|....|++.+- ......|+|--||+|.- -+.+.+.-+. -.++|.+-++++.+-|+.
T Consensus 16 tRPa~dLla~Vp-----------~~~~~~v~DLGCGpGns----TelL~~RwP~------A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 16 TRPARDLLARVP-----------LERPRRVVDLGCGPGNS----TELLARRWPD------AVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHCC-----------CCCCCEEEECCCCCCHH----HHHHHHHCCC------CEEEECCCCHHHHHHHHH--
T ss_conf 573889986478-----------66641034557788778----8999986888------867604699999999997--
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 98088753345666682347545799986641899981685676531000111234422666653577774770659999
Q gi|254780836|r 260 LIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFL 339 (674)
Q Consensus 260 li~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFl 339 (674)
+..+. +...||- ...-+...+|.+.||--| .|-.+ -. --+
T Consensus 73 --rlp~~--------~f~~aDl--~~w~p~~~~dllfaNAvl--qWlpd----------------------H~----~ll 112 (257)
T COG4106 73 --RLPDA--------TFEEADL--RTWKPEQPTDLLFANAVL--QWLPD----------------------HP----ELL 112 (257)
T ss_pred --HCCCC--------CEECCCH--HHCCCCCCCCHHHHHHHH--HHCCC----------------------CH----HHH
T ss_conf --48997--------3210527--544998763303344366--44364----------------------08----999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCC------CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCC----CCCCCCCCEEEEE
Q ss_conf 9999961466578807999738971------34776443268999999884946888317677----6557886169999
Q gi|254780836|r 340 MHLANKLELPPNGGGRAAIVLSSSP------LFNGRAGSGESEIRRWLLENDLIEAIVALPTD----LFFRTNIATYLWI 409 (674)
Q Consensus 340 qh~i~klk~~~~~ggr~aIV~ngs~------LF~G~agsGEs~IRk~lie~d~ieaII~LP~~----lFynTgI~t~Iwi 409 (674)
++.++.|.| ||..||-||+.- |-+--|.+++ --+.+=.-...-+.+ +|.. ++..++.-.-||=
T Consensus 113 ~rL~~~L~P----gg~LAVQmPdN~depsH~~mr~~A~~~p--~~~~l~~~~~~r~~v-~s~a~Yy~lLa~~~~rvDiW~ 185 (257)
T COG4106 113 PRLVSQLAP----GGVLAVQMPDNLDEPSHRLMRETADEAP--FAQELGGRGLTRAPL-PSPAAYYELLAPLACRVDIWH 185 (257)
T ss_pred HHHHHHHCC----CCEEEEECCCCCCCHHHHHHHHHHHCCC--HHHHHCCCCCCCCCC-CCHHHHHHHHCCCCCEEEEEE
T ss_conf 999985088----8569997887647645799999874283--666627665446778-998999998576543255454
Q ss_pred EECCCCCCCCCCEEEEECHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 946887434883899723677657640466--44206989999999999721025
Q gi|254780836|r 410 LSNRKTEERRGKVQLINATDLWTSIRNEGK--KRRIINDDQRRQILDIYVSRENG 462 (674)
Q Consensus 410 l~k~K~~~rkgkV~lIDAs~~~~~~rk~G~--Kr~~l~~~~i~~Iv~~y~~f~e~ 462 (674)
-.-. .++-+|-.+.+=.+.+|= -.-.|++++.+...+.|...-..
T Consensus 186 T~Y~--------h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~ 232 (257)
T COG4106 186 TTYY--------HQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAE 232 (257)
T ss_pred EECC--------CCCCCCCCHHHHEECCCCCEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 1234--------3379863222110024542002015989999999999999997
No 91
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=93.46 E-value=0.53 Score=26.00 Aligned_cols=79 Identities=16% Similarity=0.245 Sum_probs=52.8
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
+.+..|-||||+-.-+...+.+ +. ...+.|-+.......+++...--.... .-.+.+||.+.-|
T Consensus 46 G~~~ldvCCGt~dW~~~l~~~~-------G~--~G~v~Gldfs~nml~~~~~k~~~~~~~-------~~~l~hGnam~lP 109 (231)
T TIGR02752 46 GKKALDVCCGTADWAIALAEAV-------GK--EGEVKGLDFSENMLSVGKQKVKDAKLS-------NVELVHGNAMELP 109 (231)
T ss_pred CCHHHHHCCCCHHHHHHHHHHH-------CC--CCCEEEEHHHHHHHHHHHHHHHHHHHH-------HEEEECCCHHCCC
T ss_conf 4121121037337888988861-------77--771674003588999999888754320-------0222305200178
Q ss_pred CCCCCEEEEEEECCCCCC
Q ss_conf 986641899981685676
Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPFg~ 303 (674)
|.+..||||. =-||.
T Consensus 110 -~~~~~fdyvt--iGfGl 124 (231)
T TIGR02752 110 -YDDNSFDYVT--IGFGL 124 (231)
T ss_pred -CCCCCCCEEE--ECCCC
T ss_conf -7766612577--52551
No 92
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=93.37 E-value=0.45 Score=26.47 Aligned_cols=184 Identities=14% Similarity=0.181 Sum_probs=99.8
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.+|.|-.||.||-- .|+.+ +.+ .++.|.++.+....+|+.-. .. .+ ...+..+|-+.- .
T Consensus 54 ~kVLDvGCG~GG~a----~~LA~---~yg----~~V~GiDls~~~~~~A~er~--~~--~~-----~v~f~~~d~~~~-~ 112 (263)
T PTZ00098 54 SKVLDIGSGLGGGC----KYINE---KYG----AHTHGIDICEKIVNIAKERN--QD--KA-----KIEFEAKDILKK-D 112 (263)
T ss_pred CEEEEECCCCCHHH----HHHHH---HCC----CEEEEEECCHHHHHHHHHHC--CC--CC-----CEEEEECCCCCC-C
T ss_conf 86888688878899----99999---749----87999858899999999855--12--58-----548996785367-7
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674)
|++..||+|.|-=-| . | +|+. |-. .++..+..-||| ||+.+|-- -.
T Consensus 113 f~d~sFDvV~S~dai-----------l--H-----------ip~~-DK~-~l~~e~~RvLKP----GG~llitD----w~ 158 (263)
T PTZ00098 113 FPENNFDLIYSRDAI-----------L--H-----------LSLA-DKK-KLFEKCYKWLKP----NGILLITD----YC 158 (263)
T ss_pred CCCCCEEEEEEEHHH-----------H--C-----------CCHH-HHH-HHHHHHHHHCCC----CCEEEEEE----EC
T ss_conf 886745589875022-----------3--0-----------8824-399-999999998468----87899975----01
Q ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHH-HH----C-CCC
Q ss_conf 77644326899999988494688831767765578861699999468874348838997236776576-40----4-664
Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSI-RN----E-GKK 440 (674)
Q Consensus 367 ~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~-rk----~-G~K 440 (674)
++....--.+...||..+++--+-+.--.++.-++|- . .|++.|-+.+|..+ ++ + ++|
T Consensus 159 ~~~~~~~s~~~~~yi~~r~~~l~s~~~Y~~~l~~aGF---------------~-~v~~~Drt~~~~~~~~~el~~le~~~ 222 (263)
T PTZ00098 159 ADEIENWDDEFKAYIKKRKYTLIPIEEYADIIKACKF---------------K-NVEAKDISDYWLELLELEHKKLEEKK 222 (263)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCC---------------C-EEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 3578997398999998468766799999999997799---------------6-67875142899999999999998609
Q ss_pred C---CCCCHHHHHHHHHHHHHCCC
Q ss_conf 4---20698999999999972102
Q gi|254780836|r 441 R---RIINDDQRRQILDIYVSREN 461 (674)
Q Consensus 441 r---~~l~~~~i~~Iv~~y~~f~e 461 (674)
. ..+++++++.|++.+...-+
T Consensus 223 ~e~~~~~s~ed~~~~v~gW~~ki~ 246 (263)
T PTZ00098 223 EEFLKLFSEKEFISLDDGWSRKIK 246 (263)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 998763599999999999999985
No 93
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=93.33 E-value=0.64 Score=25.47 Aligned_cols=99 Identities=10% Similarity=-0.005 Sum_probs=60.1
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
.|++-....++-.|.++| ...+..+|+|-.||||=+- ...-++- +. ...+++.|.+++...
T Consensus 52 ~~~tis~P~~~a~ml~~L----------~l~~g~~VLeIGtGsGY~t-AlLa~l~---~~-----~g~V~~iE~~~~l~~ 112 (205)
T pfam01135 52 YGQTISAPHMHAMMLELL----------ELKPGMRVLEIGSGSGYLT-ACFARMV---GE-----VGRVVSIEHIPELVE 112 (205)
T ss_pred CCCEECHHHHHHHHHHHC----------CCCCCCEEEEECCCCCHHH-HHHHHHH---CC-----CCEEEEEECCHHHHH
T ss_conf 998886389999999970----------7899998999669965999-9999983---87-----876999835899999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9999989808875334566668234754579998664189998168
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674)
.|+.++--.|++. -.+..||-..-. -....||.|+..-
T Consensus 113 ~A~~~l~~~~~~n-------V~~~~gdg~~g~-~~~apfD~Iiv~a 150 (205)
T pfam01135 113 IARRNLEKLGLEN-------VIVVVGDGRQGW-PEFAPYDAIHVGA 150 (205)
T ss_pred HHHHHHHHHCCCC-------EEEEECCCCCCC-CCCCCCCEEEEEE
T ss_conf 9999999848886-------589845645588-3339805899975
No 94
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=92.49 E-value=0.84 Score=24.71 Aligned_cols=99 Identities=14% Similarity=0.101 Sum_probs=61.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
..|++-.+..++-.|.++| ...+..+|++--|||| .+++..-++- .++|+.|..+...
T Consensus 56 ~~g~~is~P~~~A~ml~~L----------~l~~~~~VLeIGtGsG-Y~tAlLa~l~-----------~~V~siE~~~~l~ 113 (213)
T PRK00312 56 GCGQTISQPYMVARMTELL----------ELKPGDRVLEIGTGSG-YQAAVLAHLV-----------ERVFSVERIKTLQ 113 (213)
T ss_pred CCCCEECHHHHHHHHHHHH----------CCCCCCEEEEECCCCC-HHHHHHHHHC-----------CCEEEEECCHHHH
T ss_conf 8998976799999999984----------3689975999659860-9999999862-----------9289994289999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 9999998980887533456666823475457999866418999816856
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
..++.++--.|... -.+..||-. +..-....||.|+.+-..
T Consensus 114 ~~a~~~l~~~~~~n-------v~~~~gdg~-~g~~~~~pfD~Iii~~a~ 154 (213)
T PRK00312 114 WQAKRRLKQLGLHN-------VSVRHGDGW-KGWPAYAPFDRILVTAAA 154 (213)
T ss_pred HHHHHHHHHCCCCC-------EEEEECCCC-CCCCCCCCCCEEEEEECC
T ss_conf 99999999849987-------699968876-678766972489998434
No 95
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=92.15 E-value=0.44 Score=26.52 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=28.7
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 4031176654046899999999985310053332255046666788999999
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
..+|.|-|||-||=|. +|.. .+ .-.++|.++.+.+..=|+.
T Consensus 64 ~~~VLDl~CGkGGDL~---Kw~~-----~~---i~~~vgiDis~~sI~~A~~ 104 (327)
T pfam03291 64 KRKVLDLDCGKGGDLE---KYFK-----GG---ISGLIGTDIAEVSIEQAQE 104 (327)
T ss_pred CCEEEEECCCCCCCHH---HHHH-----CC---CCEEEEECCCHHHHHHHHH
T ss_conf 9879983686644578---8974-----79---8689996689999999999
No 96
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.02 E-value=0.96 Score=24.34 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=92.2
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
+|++++....++..++ .|.++.+|.|.|++-||=-+...+.+. +. ...++.-|+++.--..-+
T Consensus 137 ~~~vQd~sS~l~a~~L---------~p~pge~VlD~cAAPGGKTthla~~~~----~~----~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 137 LIYVQDEASQLPALVL---------DPKPGERVLDLCAAPGGKTTHLAELME----NE----GAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred EEEEECHHHHHHHHHC---------CCCCCCEEEECCCCCCHHHHHHHHHCC----CC----CCEEEEECCCHHHHHHHH
T ss_conf 8999677876679971---------999979688807999769999999668----99----876997449878999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCC---CCC
Q ss_conf 9989808875334566668234754--57999866418999816856765--3100011123442266665357---777
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQQGST--LSKDLFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGP---GLP 329 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~~GdT--L~~d~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~---glP 329 (674)
.|+---|... ..+...|. +.+....+.+||.||..||=+.. |.++ ++-+|.. -+.
T Consensus 200 ~nl~RlG~~n-------v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~-----------Pd~~~~~~~~~i~ 261 (355)
T COG0144 200 ENLKRLGVRN-------VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRD-----------PDVKWRRTPEDIA 261 (355)
T ss_pred HHHHHHCCCC-------EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCC-----------CCHHCCCCHHHHH
T ss_conf 9999719983-------489951330143113455777859987999877113358-----------1232038999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
Q ss_conf 477065999999999614665788079997389713477644326899999988494688
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEA 389 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~iea 389 (674)
.-+.-|.-.|.+.+..+|+ ||++.-. .-+++. .=+|..|.+.|-++.-.+-
T Consensus 262 ~l~~lQ~~iL~~a~~~lk~----GG~LVYS--TCS~~~---eENE~vV~~~L~~~~~~~~ 312 (355)
T COG0144 262 ELAKLQKEILAAALKLLKP----GGVLVYS--TCSLTP---EENEEVVERFLERHPDFEL 312 (355)
T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEEEE--ECCCCH---HCCHHHHHHHHHHCCCCEE
T ss_conf 9999999999999984487----9889999--023750---0288999999985899544
No 97
>PRK11036 putative metallothionein SmtA; Provisional
Probab=91.69 E-value=0.74 Score=25.07 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999986227665753681799999999731784011013877640311766540468999999999853100533
Q gi|254780836|r 158 IYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIP 237 (674)
Q Consensus 158 iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~ 237 (674)
-|..|-.||+.+ -|-|++--+|+-|= -..-...+.+-|+....|.|--||+|.|=.. +.+. +
T Consensus 5 nFd~ia~kF~~~------iYgt~KG~iR~avl--~~dl~~~l~~l~~~plrVLDvG~G~G~~a~~----lA~~----G-- 66 (256)
T PRK11036 5 NFDDIAEKFSRN------IYGTTKGQIRQAIV--WQDLDRLLAELGPRPLRVLDAGGGEGQTAIK----MAEL----G-- 66 (256)
T ss_pred CHHHHHHHHHHH------CCCCCCHHHHHHHH--HHHHHHHHHHCCCCCCEEEEECCCCCHHHHH----HHHC----C--
T ss_conf 466789999984------54777228999999--9999999984699998399837987798999----9977----9--
Q ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 3225504666678899999998980887533456666823--475457999866418999816856
Q gi|254780836|r 238 PILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQ--QGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 238 ~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~--~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
-.+-+.|+++++-+.|+.+.-=.|+.. ++. .++.-.-..+....||.|++.---
T Consensus 67 --h~Vt~~D~S~~mL~~A~~~a~~~gv~~--------~~~~v~~~~q~l~~~~~~~fDlVlcHaVL 122 (256)
T PRK11036 67 --HQVTLCDLSAEMIQRAKQAAEAKGVSD--------NMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (256)
T ss_pred --CEEEEECCCHHHHHHHHHHHHHCCCCC--------EEEEEECCHHHHHHHCCCCCCEEEEEHHH
T ss_conf --979986699999999999988649661--------27988568998854236886678651367
No 98
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=91.36 E-value=1.1 Score=23.89 Aligned_cols=225 Identities=21% Similarity=0.273 Sum_probs=121.8
Q ss_pred HHHHCHHHHHHHHHCCHHHHHHHHH-------------------------------HCCHHHHHHHHHC---CC--CCCC
Q ss_conf 9752999899987177235775444-------------------------------2362899998740---24--5673
Q gi|254780836|r 104 IASFSDNAKAIFEDFDFSSTIARLE-------------------------------KAGLLYKICKNFS---GI--ELHP 147 (674)
Q Consensus 104 i~gfS~nv~dI~~~f~f~~~i~~L~-------------------------------~~~~L~~vI~~F~---~i--dL~p 147 (674)
+|..-+.|+.|+++|......++.. +..+...+...|- +| |..|
T Consensus 156 ~n~ll~~V~~~le~~~~~~y~e~~~~g~~~~~~~r~g~~Tge~~~~~~t~~~~fph~E~~~~~~~~~~P~vksI~~Ninp 235 (434)
T TIGR00479 156 LNKLLPKVKAILENFGVSVYNEEKEKGKLRHIVLRIGRETGELLLVLITALEKFPHKEELVLELQERYPDVKSIVQNINP 235 (434)
T ss_pred HHHHHHHHHHHHHHCCCEEECCEEEEEEEEEEEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 66789999999985497011372334443457888522523046565566523853368999998518844608860378
Q ss_pred CCCCCHHHHHHHH-----HHHHHH-HHHC-CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHH
Q ss_conf 3376114438999-----999999-8622-76657536-81799999999731784011013877640311766540468
Q gi|254780836|r 148 DTVPDRVMSNIYE-----HLIRRF-GSEV-SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGF 219 (674)
Q Consensus 148 ~~v~n~~mG~iyE-----~LIrkF-ae~~-~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGm 219 (674)
+. .|..+|..-| ..++.+ ++-+ .=.|=.|| -=.++...|++=+. +-+.=. .-.+|.|--||-|.|
T Consensus 236 ~k-tnvIFG~~t~~i~G~~~~y~~~~d~~f~lsaR~F~QVN~~~~~~l~~~a~----~~l~Lq--g~e~V~DayCG~Gtf 308 (434)
T TIGR00479 236 EK-TNVIFGEETEVIAGEEPIYELSGDVKFELSARDFFQVNSEQTEKLVDRAL----EALELQ--GEEKVVDAYCGVGTF 308 (434)
T ss_pred CC-CCEECCCCEEEEECCEEHHHHHCCEEEEECCCCCEECCHHHHHHHHHHHH----HHHHCC--CCCEEEEEECCCCCC
T ss_conf 98-74220771168877700322128846875576502018767799999999----997159--865578631575520
Q ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCC----CCCCCCEEEE
Q ss_conf 999999999853100533322550466667889999999898088753345666682347-54579----9986641899
Q gi|254780836|r 220 LTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQG-STLSK----DLFTGKRFHY 294 (674)
Q Consensus 220 L~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~G-dTL~~----d~~~~~kFD~ 294 (674)
=.=- +..++ ..+|.|+++++.-=|+=|-=++|+. |+.+- -++.. =..++..||.
T Consensus 309 tLpL-------A~qak-----~v~G~E~v~e~v~~a~~NAe~Ng~~---------N~~F~~g~~E~~~p~~~~e~~~~D~ 367 (434)
T TIGR00479 309 TLPL-------AKQAK-----SVVGVEVVPESVEDAKRNAELNGIA---------NVEFLAGTLETVLPKQPWEGISPDV 367 (434)
T ss_pred HHHH-------HHCCC-----EEEEEECCHHHHHHHHHHHHHCCCC---------CHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf 0444-------40121-----8888714376789998888860353---------2013331232110144222677898
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCC
Q ss_conf 981685676531000111234422666653577774770659999999996146657880799973-8971347764432
Q gi|254780836|r 295 CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSG 373 (674)
Q Consensus 295 vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsG 373 (674)
||-.|| |- +.+ .+++.-|-+||| -|++=|- |=++|=|
T Consensus 368 ~llDPP----------------------R~-------GCa--~~~L~~I~~~kP-----~rivYVSCNP~TLAR------ 405 (434)
T TIGR00479 368 VLLDPP----------------------RK-------GCA--AEVLRTIIKLKP-----KRIVYVSCNPATLAR------ 405 (434)
T ss_pred EEECCC----------------------CC-------CCH--HHHHHHHHHCCC-----EEEEEEECCCHHHHH------
T ss_conf 888888----------------------98-------745--899998862077-----059998448534799------
Q ss_pred HHHHHHHHHHCC-CEEEEEECCCCCCCCCC
Q ss_conf 689999998849-46888317677655788
Q gi|254780836|r 374 ESEIRRWLLEND-LIEAIVALPTDLFFRTN 402 (674)
Q Consensus 374 Es~IRk~lie~d-~ieaII~LP~~lFynTg 402 (674)
. -+.|...+ |.=.=|+ |-+||-.||
T Consensus 406 D---l~~L~~~GfY~i~~~q-~~DmFPhT~ 431 (434)
T TIGR00479 406 D---LEVLCKEGFYKIEKVQ-PVDMFPHTA 431 (434)
T ss_pred H---HHHHHHCCCEEEEEEE-EEECCCCCC
T ss_conf 9---9999737962678885-430578876
No 99
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=90.79 E-value=1.3 Score=23.54 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
+.|---|+.+|+..+-. + .||+ ++|.+||.|-=-+ |+.. .+ ..+-+-++|+.+
T Consensus 12 ky~lt~~HSev~~a~~~-i----------~pgk---~LDlgcG~GRNsl----yLa~----~G----~~VtavD~n~~a- 64 (192)
T pfam03848 12 KYNTTPTHSEVLEAVKT-V----------KPGK---ALDLGCGQGRNSL----FLSL----LG----YDVTAVDHNENS- 64 (192)
T ss_pred HCCCCCCCHHHHHHHHH-C----------CCCC---EEEECCCCCHHHH----HHHH----CC----CEEEEEECCHHH-
T ss_conf 24899880999999863-7----------9974---6660478973189----9986----89----917999799999-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674)
|.+.+-++.-.+.+. +...-| |....+ .++||+|++-=-|- .+..+
T Consensus 65 -L~~l~~ia~~e~l~i------~~~~~D-in~~~~-~e~YD~IisTVvfm--------FL~~~----------------- 110 (192)
T pfam03848 65 -IANLQDIKEKENLDI------PTALYD-INSASI-DENYDFILSTVVLM--------FLQAE----------------- 110 (192)
T ss_pred -HHHHHHHHHHCCCCC------EEEEEC-CCCCCC-CCCCCEEEEEEEEE--------ECCHH-----------------
T ss_conf -999999999709975------268731-555687-67768798888777--------31867-----------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 06599999999961466578807999738
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLS 361 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~n 361 (674)
-+.+.|.-|+..++.||-..||-.
T Consensus 111 -----~ip~iI~~mq~~T~pGGynlIv~a 134 (192)
T pfam03848 111 -----RIPAIIANMQEHTNVGGYNLIVAA 134 (192)
T ss_pred -----HHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf -----877999999985289988999976
No 100
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=90.28 E-value=0.58 Score=25.78 Aligned_cols=65 Identities=12% Similarity=0.295 Sum_probs=36.3
Q ss_pred HHHHHHHHHC-CHHHHHHHHHHCCHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 9989998717-723577544423628999987402-45673337611443899999999986227665753681799999
Q gi|254780836|r 109 DNAKAIFEDF-DFSSTIARLEKAGLLYKICKNFSG-IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 (674)
Q Consensus 109 ~nv~dI~~~f-~f~~~i~~L~~~~~L~~vI~~F~~-idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~L 186 (674)
++-+.|++|| ++.. .++...+.+..++++..+ -||+.+ ++-.+|..++. |+ .||-.+.-+
T Consensus 177 ~~G~~il~NFLn~~~--~~~~~~~~~k~~l~kl~~g~~Lt~~-----ea~~~m~~im~----------G~-~t~~qi~a~ 238 (531)
T PRK09522 177 TQGARLLEQTLAWAQ--QKLEPTNTLQPILEKLYQAQTLSQQ-----ESHQLFSAVVR----------GE-LKPEQLAAA 238 (531)
T ss_pred CCHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHCCCCCCHH-----HHHHHHHHHHC----------CC-CCHHHHHHH
T ss_conf 777999999856543--4355444089999998669999999-----99999999968----------99-999999999
Q ss_pred HHHHH
Q ss_conf 99973
Q gi|254780836|r 187 ATALL 191 (674)
Q Consensus 187 mv~ll 191 (674)
++.|-
T Consensus 239 L~~lr 243 (531)
T PRK09522 239 LVSMK 243 (531)
T ss_pred HHHHH
T ss_conf 99998
No 101
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=90.27 E-value=0.87 Score=24.59 Aligned_cols=83 Identities=13% Similarity=0.150 Sum_probs=49.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808--8753345666682347545799
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR--LESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g--~~~d~~~~~~~NI~~GdTL~~d 285 (674)
.+.|-++|||+|=++|.-+ .+. +..=.|.|...+.+-+-|+-.=. +.... .......++.+..+
T Consensus 58 ~~LD~FAGsG~LG~EALSR------gA~-----~~~f~E~d~~~~~~l~~N~~~L~nrlk~~~---~~~~~~~~~~~~~~ 123 (210)
T TIGR00095 58 HFLDLFAGSGSLGLEALSR------GAK-----SAVFVEQDKKVAQTLKENLSTLKNRLKLSG---EQATVLNDAERALL 123 (210)
T ss_pred EEEEEECCCHHHHHHHHHH------CCC-----EEEEEECCHHHHHHHHHHHHHHHHHHCCCC---CEEEEHHHHHHHHH
T ss_conf 2788540644653766401------416-----237873686799999999999888715853---00000002566657
Q ss_pred C--CCCC-EEEEEEECCCCCCC
Q ss_conf 9--8664-18999816856765
Q gi|254780836|r 286 L--FTGK-RFHYCLSNPPFGKK 304 (674)
Q Consensus 286 ~--~~~~-kFD~vlaNPPFg~~ 304 (674)
. -.+. -||+|...|||+.+
T Consensus 124 ~~~~~~ts~~d~iylDPPf~~~ 145 (210)
T TIGR00095 124 FLAKKQTSPFDIIYLDPPFNTG 145 (210)
T ss_pred HHHCCCCCCEEEEEECCCCCCC
T ss_conf 7651799611478714888876
No 102
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=89.96 E-value=1.5 Score=23.09 Aligned_cols=140 Identities=17% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
++|+ .|-++|--+...-| .|.+...+.|--||||++=+++. .+ . ...+.|..|.+++..
T Consensus 13 ~~~p-~TK~EIRal~ls~L----------~~~~g~~l~DIGaGtGsi~iE~a-~~---~------p~~~v~AIe~~~~a~ 71 (187)
T COG2242 13 EGGP-MTKEEIRALTLSKL----------RPRPGDRLWDIGAGTGSITIEWA-LA---G------PSGRVIAIERDEEAL 71 (187)
T ss_pred CCCC-CCHHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHHHHH-HH---C------CCCEEEEEECCHHHH
T ss_conf 8999-86799899889860----------88999989995788668999999-73---9------885599992588899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664-18999816856765310001112344226666535777747
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGK-RFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKI 331 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~-kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~ 331 (674)
.+.+.|.--.|.+. -.|..|+.-. .+++. +||.|.-+== + ++
T Consensus 72 ~~~~~N~~~fg~~n-------~~vv~g~Ap~--~L~~~~~~daiFIGGg-~------------------------~i--- 114 (187)
T COG2242 72 ELIERNAARFGVDN-------LEVVEGDAPE--ALPDLPSPDAIFIGGG-G------------------------NI--- 114 (187)
T ss_pred HHHHHHHHHHCCCC-------EEEEECCCHH--HHCCCCCCCEEEECCC-C------------------------CH---
T ss_conf 99999999849996-------7999546457--6369999999998798-7------------------------77---
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 7065999999999614665788079997389713477644326899999988494
Q gi|254780836|r 332 SDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDL 386 (674)
Q Consensus 332 sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ 386 (674)
=.-|++...+|++ ||| +|+|-..|=+ +..+=+++=+.++
T Consensus 115 ----~~ile~~~~~l~~----ggr--lV~naitlE~------~~~a~~~~~~~g~ 153 (187)
T COG2242 115 ----EEILEAAWERLKP----GGR--LVANAITLET------LAKALEALEQLGG 153 (187)
T ss_pred ----HHHHHHHHHHCCC----CCE--EEEEEECHHH------HHHHHHHHHHCCC
T ss_conf ----8999999997186----876--9998600888------9999999997298
No 103
>KOG2730 consensus
Probab=89.94 E-value=0.27 Score=27.90 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCC-CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 753-6817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 175 EDF-MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 175 Gef-fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
|+| +||-.|...++.-+..-. .+ .-|.|-+||-||=-++-.-+ --.+++.|+.|.-.|
T Consensus 72 ~wfsvTpe~ia~~iA~~v~~~~------~~---~~iidaf~g~gGntiqfa~~------------~~~VisIdiDPikIa 130 (263)
T KOG2730 72 GWFSVTPEKIAEHIANRVVACM------NA---EVIVDAFCGVGGNTIQFALQ------------GPYVIAIDIDPVKIA 130 (263)
T ss_pred CEEEECCHHHHHHHHHHHHHHC------CC---CHHHHHHHCCCCHHHHHHHH------------CCEEEEEECCHHHHH
T ss_conf 5477251899999987888733------74---30025453688428899871------------880799852678888
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEEEEECCCCCCC
Q ss_conf 99999898088753345666682347545---7999866418999816856765
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTL---SKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL---~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
+|+-|+-+-|+.... -...||-| +.=++.....|.|..-||.|-+
T Consensus 131 ~AkhNaeiYGI~~rI------tFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp 178 (263)
T KOG2730 131 CARHNAEVYGVPDRI------TFICGDFLDLASKLKADKIKYDCVFLSPPWGGP 178 (263)
T ss_pred HHHCCCEEECCCCEE------EEEECHHHHHHHHHHHHHHEEEEEECCCCCCCC
T ss_conf 776065032577505------888330999999886410104566169999996
No 104
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=89.87 E-value=1.1 Score=24.01 Aligned_cols=178 Identities=16% Similarity=0.226 Sum_probs=102.4
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE-EECCCCC
Q ss_conf 76657536-817999999997317840110138776403117665404689999999998531005333225-5046666
Q gi|254780836|r 171 SEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV-PHGQELE 248 (674)
Q Consensus 171 ~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~-lyGQEin 248 (674)
.+.-|||| .=..|++=+|+.+- +.....|.-=-||+|. ||.. +.+ . ... +++.|+.
T Consensus 4 ~K~lGQnFL~D~~~~~~Iv~~~~----------~~~~~~vlEIGPG~G~-LT~~---Ll~---~-----~~~~v~aiEiD 61 (277)
T TIGR00755 4 RKSLGQNFLIDESVIQKIVEAAN----------VLENDVVLEIGPGLGA-LTEP---LLK---R-----AKKLVTAIEID 61 (277)
T ss_pred CCCCCCCEEECHHHHHHHHHHHC----------CCCCCEEEEECCCCHH-HHHH---HHH---H-----CCCEEEEEEEC
T ss_conf 64227602408789999999743----------7899779997388207-8999---998---2-----59848999726
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE-----EEEECCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 788999999989808875334566668234754579998664189-----998168567653100011123442266665
Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFH-----YCLSNPPFGKKWEKDKDAVEKEHKNGELGR 323 (674)
Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD-----~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~R 323 (674)
+..-..-+ +-.. + .....-.|..||-|.-|.-....|+ .|+||=||.++=
T Consensus 62 ~~l~~~L~-----~~~~-~-~~~~~~~~i~~Dalk~~~~~~~~~~~~~~~~vv~NLPY~Iss------------------ 116 (277)
T TIGR00755 62 PRLAEILR-----KLLS-E-KLYENLEVIEGDALKVDLNSLEDFPKEDKLKVVSNLPYNISS------------------ 116 (277)
T ss_pred HHHHHHHH-----HHCC-C-CCCCCEEEEECCEEEECCCHHHHCCCCCCCEEEEECCCCHHH------------------
T ss_conf 78999987-----5215-4-332425787144454123204331678985798507743248------------------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCC--CC-CCCCCCCCH----HHHHHHHHHCCCEEEEEECCC
Q ss_conf 35777747706599999999961-46657880799973897--13-477644326----899999988494688831767
Q gi|254780836|r 324 FGPGLPKISDGSMLFLMHLANKL-ELPPNGGGRAAIVLSSS--PL-FNGRAGSGE----SEIRRWLLENDLIEAIVALPT 395 (674)
Q Consensus 324 f~~glP~~sdg~~lFlqh~i~kl-k~~~~~ggr~aIV~ngs--~L-F~G~agsGE----s~IRk~lie~d~ieaII~LP~ 395 (674)
-++.|.+.+. ++ .-+.+|||=.- +. .++..||-+ |=+=|++ .-|+-|.-.|+
T Consensus 117 -------------p~~~~Ll~~~~~~----~~~~~vlM~QkEvA~Rl~A~p~sk~Yg~LSV~~q~~---~~V~~v~~V~P 176 (277)
T TIGR00755 117 -------------PLIFKLLKEEEKP----KFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYL---ANVEIVFKVPP 176 (277)
T ss_pred -------------HHHHHHHHHHCCC----CCCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHH---HEEEEEEEECC
T ss_conf -------------9999999861364----447778874267777651899984100698887465---22268687378
Q ss_pred CCCCCC-CCCEEEEEEECCCC
Q ss_conf 765578-86169999946887
Q gi|254780836|r 396 DLFFRT-NIATYLWILSNRKT 415 (674)
Q Consensus 396 ~lFynT-gI~t~Iwil~k~K~ 415 (674)
+.||-- -+-+.|.-|.+++.
T Consensus 177 ~aF~P~PkV~Savv~l~~~~~ 197 (277)
T TIGR00755 177 SAFYPPPKVDSAVVRLIPREN 197 (277)
T ss_pred CCCCCCCCCEEEEEEEEECCC
T ss_conf 344288820489999987589
No 105
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=89.61 E-value=0.077 Score=31.48 Aligned_cols=83 Identities=17% Similarity=0.207 Sum_probs=56.2
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
.|..+.+|+|.|.|-|=+-++|.+. ...+++-.|.||...-||+.|=.=++.-. ..-.|.+||+
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~r-----------GA~~VitvEkdp~VLeLa~lNPwSr~l~~-----~~i~iilGD~ 194 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALER-----------GAIHVITVEKDPNVLELAKLNPWSRELFE-----IAIKIILGDA 194 (287)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHC-----------CCCEEEEEEECCCEEEEECCCCCCCCCCC-----CCCEEECCCH
T ss_conf 4366878443246713899999875-----------87489999608772774135889842020-----0317861659
Q ss_pred CCC-CCCCCCEEEEEEECCC
Q ss_conf 579-9986641899981685
Q gi|254780836|r 282 LSK-DLFTGKRFHYCLSNPP 300 (674)
Q Consensus 282 L~~-d~~~~~kFD~vlaNPP 300 (674)
..- ..|.+..||+|+-.||
T Consensus 195 ~e~V~~~~D~sfDaIiHDPP 214 (287)
T COG2521 195 YEVVKDFDDESFDAIIHDPP 214 (287)
T ss_pred HHHHHCCCCCCCCEEEECCC
T ss_conf 99974188653016860797
No 106
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=89.55 E-value=1.1 Score=23.85 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=82.6
Q ss_pred HHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHC
Q ss_conf 99999973178401101387764031176654046899999999985310053332255046666788999999989808
Q gi|254780836|r 184 VHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRR 263 (674)
Q Consensus 184 i~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g 263 (674)
++-+|+.+ .+....+|.+--+|+|. ||.. +.+.. ..+...|+++.....-+..+ .+
T Consensus 2 i~kIv~~a----------~~~~~d~VlEIGPG~G~-LT~~---Ll~~~--------~~v~aiE~D~~l~~~L~~~~--~~ 57 (169)
T smart00650 2 IDKIVRAA----------NLRPGDTVLEIGPGKGA-LTEE---LLERA--------ARVTAIEIDPRLAPRLREKF--AA 57 (169)
T ss_pred HHHHHHHH----------CCCCCCEEEEECCCHHH-HHHH---HHHHC--------CCCCEEECCHHHHHHHHHHH--CC
T ss_conf 88998863----------89994979996897029-9999---99731--------63531637889999999864--10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 87533456666823475457999866418999816856765310001112344226666535777747706599999999
Q gi|254780836|r 264 LESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLA 343 (674)
Q Consensus 264 ~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i 343 (674)
. ..-+|.+||-|.-|. +......|++|.||+.+=. .+..-... + +....+-+++-.-+.
T Consensus 58 ~-------~n~~ii~~D~L~~~~-~~~~~~~iv~NLPY~Iss~----il~~ll~~----~-----~~~~~~~lm~QkEvA 116 (169)
T smart00650 58 A-------DNLTVIHGDALKFDL-PKLQPYKVVGNLPYNISTP----ILFKLLEE----P-----PAFRDAVLMVQKEVA 116 (169)
T ss_pred C-------CCEEEEECCHHCCCC-CCCCCCEEEECCCCCCHHH----HHHHHHHC----C-----CCHHHHHHHHHHHHH
T ss_conf 7-------977999571112553-1158736993476301189----99999862----6-----541266655399999
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCEEEEEEEC
Q ss_conf 961466578807999738971347764432689999998849468883176776557-886169999946
Q gi|254780836|r 344 NKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFR-TNIATYLWILSN 412 (674)
Q Consensus 344 ~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFyn-TgI~t~Iwil~k 412 (674)
.+|- | -+|+.-+ |.=|-+=++ -.-++-+...|.+.||- -.+-.++.-|..
T Consensus 117 ~Ri~---------a--~p~~k~y-----~~LSv~~q~---~~~~~~~~~V~~~~F~P~PkVdS~vv~l~p 167 (169)
T smart00650 117 RRLA---------A--KPGSKDY-----GRLSVLLQP---YFDVKILFKVPPEAFRPPPKVDSAVVRLER 167 (169)
T ss_pred HHHH---------C--CCCCCCC-----CHHHHHHHH---HEEEEEEEEECHHHCCCCCCCEEEEEEEEE
T ss_conf 9986---------3--7898551-----499999998---740789789986657899984089999997
No 107
>PRK03612 spermidine synthase; Provisional
Probab=89.31 E-value=0.45 Score=26.48 Aligned_cols=136 Identities=18% Similarity=0.160 Sum_probs=71.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
++|.=-.-|.|+-+-+..+ ...+ .++--.|+.|+.-.+|+.+-.+...+.+..++.--++..+|-..-=.
T Consensus 295 ~~VLiiGGGdG~a~revLk-------~~~v---e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~ 364 (516)
T PRK03612 295 RRVLILGGGDGLALREVLK-------YPDV---EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR 364 (516)
T ss_pred CEEEEECCCCCHHHHHHHC-------CCCC---CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHH
T ss_conf 7389983776087999864-------8996---63789951889999998572144441232349964898537899998
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674)
-..++||+|+..+|=- +... .. + -+ | --|-+.+-.+|++ +| +.++..|||.|
T Consensus 365 ~~~~~yDvIi~D~pdP--~~~~---~~---~--LY----------s---~eFY~~~~~~L~~----~G-~~v~qs~Sp~~ 416 (516)
T PRK03612 365 KLPETFDAIIVDLPDP--SNPA---LG---K--LY----------S---VEFYRLLKRRLAP----DG-LLVVQSTSPYF 416 (516)
T ss_pred HCCCCCCEEEEECCCC--CCCC---CC---C--CC----------C---HHHHHHHHHHCCC----CC-EEEEECCCCCC
T ss_conf 6888788899818997--9952---24---6--75----------3---9999999984499----95-89993689755
Q ss_pred CCCCCCCHHHHHHHHHH
Q ss_conf 77644326899999988
Q gi|254780836|r 367 NGRAGSGESEIRRWLLE 383 (674)
Q Consensus 367 ~G~agsGEs~IRk~lie 383 (674)
+-.+ -..|.+-|=+
T Consensus 417 ~~~~---f~~i~~T~~~ 430 (516)
T PRK03612 417 APKA---FWSIEATLEA 430 (516)
T ss_pred CCHH---HHHHHHHHHH
T ss_conf 2203---4689999998
No 108
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=89.30 E-value=1.7 Score=22.77 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCCCCCCCCHH-----HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
Q ss_conf 76657536817-----9999999973178401101387764031176654046899999999985310053332255046
Q gi|254780836|r 171 SEGAEDFMTPR-----DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQ 245 (674)
Q Consensus 171 ~~~aGeffTPR-----~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQ 245 (674)
.+.+.=||-|+ ++.=+++.... +....+|+|+-|||| +.+..|.++.+. ..+.-.
T Consensus 22 ~~~~pVFYNP~~~~nRDlsvl~~~~~~----------~~~~~~ilDalsasG---iR~iRy~~E~~~-------~~v~~N 81 (376)
T PRK04338 22 SKWAPVFYNPAMELNRDISVLALKAFG----------PKRRKSVLDALSASG---IRGIRYALETGV-------EKVILN 81 (376)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHH----------CCCCCEEEECCCCCC---HHHHHHHHHCCC-------CEEEEE
T ss_conf 878862238513043429999999974----------206976874067654---999999872799-------879995
Q ss_pred CCCHHHHHHHHHHHHHHCCC
Q ss_conf 66678899999998980887
Q gi|254780836|r 246 ELEPETHAVCVAGMLIRRLE 265 (674)
Q Consensus 246 Ein~~tyaIak~nMli~g~~ 265 (674)
|+|+.+..+.+.|+-+.|++
T Consensus 82 Di~~~a~~~i~~N~~~N~~~ 101 (376)
T PRK04338 82 DINPDAVELIKKNLELNGLE 101 (376)
T ss_pred CCCHHHHHHHHHHHHHHCCC
T ss_conf 69999999999999982998
No 109
>PRK11524 putative methyltransferase; Provisional
Probab=88.81 E-value=0.56 Score=25.86 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCCCCHH--HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 7536817--99999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 175 EDFMTPR--DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 175 GeffTPR--~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
..|-|+- ++++-++.+. ..+| ..|+||+||||.-+++|.+. + -.+.|.|++++-+
T Consensus 187 ~~HPt~kP~~L~e~lI~~~---------S~eg--DlVLDPF~GSGTT~~aA~~l----g--------R~~IGiEi~~eY~ 243 (284)
T PRK11524 187 ENHPTQKPEALLKRIILAS---------SNPG--DIVLDPFAGSFTTGAVAKAS----G--------RKFIGIEINEEYI 243 (284)
T ss_pred CCCCCCCHHHHHHHHHHHH---------CCCC--CEEEECCCCCCHHHHHHHHC----C--------CCEEEEECCHHHH
T ss_conf 6889879299999999974---------8899--98995798886899999982----9--------9589996899999
Q ss_pred HHHHHHH
Q ss_conf 9999998
Q gi|254780836|r 253 AVCVAGM 259 (674)
Q Consensus 253 aIak~nM 259 (674)
.||+--+
T Consensus 244 ~iA~~Ri 250 (284)
T PRK11524 244 KMGLRRL 250 (284)
T ss_pred HHHHHHH
T ss_conf 9999998
No 110
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=87.47 E-value=2.2 Score=22.01 Aligned_cols=68 Identities=25% Similarity=0.179 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCE-EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 81799999999731784011013877640-31176654046899999999985310053332255046666788999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIR-TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~-tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
|=++|=-|.-..| .+.+.. .+.|==||||++=+++...+ +...++|+-|.|++...+-++
T Consensus 3 TK~EvR~l~L~~L----------~l~~~~~v~wDIGaGtGS~~iE~~~~~---------p~~g~v~aiEr~~~~~~~~~~ 63 (135)
T TIGR02469 3 TKREVRALTLAKL----------RLRPGDSVLWDIGAGTGSVTIEAARLV---------PNSGRVYAIERNPEALRLIER 63 (135)
T ss_pred CHHHHHHHHHHHH----------CCCCCCCEEEEECCCCCHHHHHHHHHC---------CCCCEEEEEECCHHHHHHHHH
T ss_conf 4788999999871----------789999468896057483899999735---------986079998537689879999
Q ss_pred HHHHH-CCC
Q ss_conf 98980-887
Q gi|254780836|r 258 GMLIR-RLE 265 (674)
Q Consensus 258 nMli~-g~~ 265 (674)
|.-=. +..
T Consensus 64 N~~~~c~~~ 72 (135)
T TIGR02469 64 NLRRFCGVS 72 (135)
T ss_pred HHHHHCCCC
T ss_conf 999828999
No 111
>KOG3191 consensus
Probab=87.27 E-value=1.6 Score=22.94 Aligned_cols=106 Identities=19% Similarity=0.275 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHH
Q ss_conf 53681799999999731784011013877640311766540468999999999853100533322550466667889999
Q gi|254780836|r 176 DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVC 255 (674)
Q Consensus 176 effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIa 255 (674)
+.|-|-+=.-|+.+.|-..........|. -+.+--||||=--+ ++... .. ......-.++||..-+-.
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~---i~lEIG~GSGvvst----fL~~~---i~--~~~~~latDiNp~A~~~T 84 (209)
T KOG3191 17 DVYEPAEDTFLLLDALEKDAAELKGHNPE---ICLEIGCGSGVVST----FLASV---IG--PQALYLATDINPEALEAT 84 (209)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHCCCE---EEEEECCCCCHHHH----HHHHH---CC--CCCEEEEECCCHHHHHHH
T ss_conf 13476410538999999999998614860---58993488465999----99974---17--771699954998999887
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 999898088753345666682347545799986641899981685676
Q gi|254780836|r 256 VAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGK 303 (674)
Q Consensus 256 k~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~ 303 (674)
+--...++...+ ....|-+ +....++.|+++-||||=.
T Consensus 85 l~TA~~n~~~~~--------~V~tdl~--~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191 85 LETARCNRVHID--------VVRTDLL--SGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred HHHHHHCCCCCC--------EEEHHHH--HHHCCCCCCEEEECCCCCC
T ss_conf 999985577520--------5652577--6633277308997899676
No 112
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=87.24 E-value=0.67 Score=25.35 Aligned_cols=52 Identities=23% Similarity=0.348 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCEEEE-EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 2347545799986641899-9816856765310001112344226666535777747706599999999961
Q gi|254780836|r 276 IQQGSTLSKDLFTGKRFHY-CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKL 346 (674)
Q Consensus 276 I~~GdTL~~d~~~~~kFD~-vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~kl 346 (674)
+.+||||++...-..-.-. .-..||||++|-. ...|||. ||- +|+.++..+|
T Consensus 4 ~vFGDSlsD~GN~~~~~~~~~~~~pPYG~~f~~-----------~ptGRFS-------nG~-~~~D~lA~~l 56 (315)
T cd01837 4 FVFGDSLVDTGNNNYLPTLAKANFPPYGIDFPG-----------RPTGRFS-------NGR-LIIDFIAEAL 56 (315)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCC-------CCC-HHHHHHHHHC
T ss_conf 993674543374613576566789998878899-----------9998878-------988-3999999982
No 113
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=87.19 E-value=1.8 Score=22.49 Aligned_cols=110 Identities=13% Similarity=0.088 Sum_probs=64.3
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 99999862276657536817999999997317840110138776403117665404689999999998531005333225
Q gi|254780836|r 162 LIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 (674)
Q Consensus 162 LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~ 241 (674)
.++++..-+.+..||- .|.-|.+++-.+- -+...+.+|=-||-|..+.+++-+. +. -.
T Consensus 11 ~L~~Y~~fs~~vYGEl-lp~fis~ii~~~~-----------l~~~dvF~DLGSGVGnvv~QaAl~t-------gc---~~ 68 (205)
T pfam08123 11 KLNHYKAFSNEVYGEL-LPEFLSDVLDKCN-----------LGPQDVFVDLGSGVGNCVLQAALEF-------GC---KL 68 (205)
T ss_pred HHCCCCCCCCCCCCCC-CHHHHHHHHHHHC-----------CCCCCEEEECCCCCCHHHHHHHHHH-------CC---CE
T ss_conf 8606789997551135-8899999999839-----------8976889985888329999999870-------96---53
Q ss_pred EECCCCCHHHHHHHHHHH-------HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC--CEEEEEEEC
Q ss_conf 504666678899999998-------980887533456666823475457999866--418999816
Q gi|254780836|r 242 PHGQELEPETHAVCVAGM-------LIRRLESDPRRDLSKNIQQGSTLSKDLFTG--KRFHYCLSN 298 (674)
Q Consensus 242 lyGQEin~~tyaIak~nM-------li~g~~~d~~~~~~~NI~~GdTL~~d~~~~--~kFD~vlaN 298 (674)
.+|.|+.+....+|.... -+-|...- .-.+..||=+.+..... .+-|+|+.|
T Consensus 69 s~GiEi~~~~a~~A~~~~~~~~~~~~~~G~~~~-----~~~l~~gdFl~~~~~~~~~~~a~VI~vN 129 (205)
T pfam08123 69 SFGCEIMDNASNLAELQDEEFKKRCKLFGKKLG-----KIEFIRGSFLDNERVEEIIPEADVILVN 129 (205)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCC-----CEEEEECCCCCCHHHHHHHCCCCEEEEE
T ss_conf 888886566899999999999999999588768-----7389977778858899863479889994
No 114
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=86.79 E-value=2.4 Score=21.76 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=44.1
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
++.+|+|--||-|||...+.+.- + ..+-|.-++++-++.++.-.--.|+... -.+...|--
T Consensus 62 ~g~~vLDiGCGWG~~a~~~a~~~-------g----~~v~giTlS~~Q~~~~~~r~~~~gl~~~------v~v~~~Dyr-- 122 (273)
T pfam02353 62 PGMTLLDIGCGWGGLMRRAAERY-------D----VNVVGLTLSKNQYKLARQRVAAEGLQRK------VEVLLQDYR-- 122 (273)
T ss_pred CCCEEEEECCCCHHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHHHHHCCCCCC------CCEEECCHH--
T ss_conf 99989997888089999999847-------9----5189997978999999999987087432------120006265--
Q ss_pred CCCCCCEEEEEEECCCC
Q ss_conf 99866418999816856
Q gi|254780836|r 285 DLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 285 d~~~~~kFD~vlaNPPF 301 (674)
| ...+||.|+|-=-|
T Consensus 123 d--~~~~fD~IvSiem~ 137 (273)
T pfam02353 123 D--FDEPFDRIVSVGMF 137 (273)
T ss_pred H--CCCCCCEEEEEHHH
T ss_conf 4--76666667765168
No 115
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=86.71 E-value=0.86 Score=24.66 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=45.2
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
..+|+|-.||-| .|++.+-.. + ..++|.++.......|+.--...|+..+... ...+|
T Consensus 60 g~~vLDvGCGgG-~Lse~mAr~-------G----a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----------~~~ed 117 (243)
T COG2227 60 GLRVLDVGCGGG-ILSEPLARL-------G----ASVTGIDASEKPIEVAKLHALESGVNIDYRQ----------ATVED 117 (243)
T ss_pred CCEEEEECCCCC-HHHHHHHHC-------C----CEEEEECCCHHHHHHHHHHHHHCCCCCCCHH----------HHHHH
T ss_conf 770887458832-864999977-------9----9469743876778999875442463225223----------32999
Q ss_pred -CCCCCEEEEEEECCC
Q ss_conf -986641899981685
Q gi|254780836|r 286 -LFTGKRFHYCLSNPP 300 (674)
Q Consensus 286 -~~~~~kFD~vlaNPP 300 (674)
...+.+||+|++.--
T Consensus 118 l~~~~~~FDvV~cmEV 133 (243)
T COG2227 118 LASAGGQFDVVTCMEV 133 (243)
T ss_pred HHHCCCCCCEEEEHHH
T ss_conf 9724897448977358
No 116
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=86.24 E-value=2 Score=22.30 Aligned_cols=60 Identities=23% Similarity=0.154 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
..|.|+.++. |+..++-. .......|+||.||||..+++|..-- -.+.|.|++++-..+
T Consensus 201 ~~hp~~~P~~-l~~r~i~~--------~s~~~diVlDpf~GsGtt~~aa~~~~------------r~~ig~e~~~~y~~~ 259 (302)
T COG0863 201 KLHPAQKPLA-LIERLIRD--------YSFPGDIVLDPFAGSGTTGIAAKNLG------------RRFIGIEINPEYVEV 259 (302)
T ss_pred CCCCCCCHHH-HHHHHHHH--------CCCCCCEEEECCCCCCCHHHHHHHHC------------CCEECCCCCHHHHHH
T ss_conf 5787415588-99999995--------58877788741768871999999811------------413435234889999
Q ss_pred H
Q ss_conf 9
Q gi|254780836|r 255 C 255 (674)
Q Consensus 255 a 255 (674)
+
T Consensus 260 ~ 260 (302)
T COG0863 260 A 260 (302)
T ss_pred H
T ss_conf 9
No 117
>KOG2912 consensus
Probab=86.16 E-value=0.53 Score=26.01 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=36.0
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC---CCCEEEEEEECCCCC
Q ss_conf 255046666788999999989808875334566668234754579998---664189998168567
Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF---TGKRFHYCLSNPPFG 302 (674)
Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~---~~~kFD~vlaNPPFg 302 (674)
..+-+.|+...++..|+.|..=.+......- -....-+||..|.. ++..|||+++||||=
T Consensus 127 ~~f~~teidd~s~~~a~snV~qn~lss~ikv---V~~~~~ktll~d~~~~~~e~~ydFcMcNPPFf 189 (419)
T KOG2912 127 WYFLATEIDDMSFNYAKSNVEQNNLSSLIKV---VKVEPQKTLLMDALKEESEIIYDFCMCNPPFF 189 (419)
T ss_pred CEEEEEECCCCCCCHHHCCCCCCCCCCCEEE---EEECCHHHCCHHHHCCCCCCEEEEEECCCCHH
T ss_conf 3236641210235545424000366010357---78453332012132267653246883287033
No 118
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=86.03 E-value=2.2 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=23.4
Q ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 418999816856765310001112344226666535777747706599999999961466
Q gi|254780836|r 290 KRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELP 349 (674)
Q Consensus 290 ~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~ 349 (674)
.+||.+++.|||-.. |--||+...|+-||..
T Consensus 111 ~~FD~f~TDPPyT~~-----------------------------G~~LFlsRgi~~Lk~e 141 (243)
T pfam01861 111 HKFDVFITDPPETVD-----------------------------GLKAFLGRGIATLKGE 141 (243)
T ss_pred CCCCEEECCCCCCHH-----------------------------HHHHHHHHHHHHHCCC
T ss_conf 167989718998778-----------------------------9999999999982668
No 119
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=85.90 E-value=1.7 Score=22.77 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=49.4
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
+.|==-||.+|+..+ ..+ .|| .+.|-+||.|.-=+ |+... ...+-+.++|+..
T Consensus 12 ~Y~~~~~hs~~~~~~-~~~----------~~g---~~LDlgcG~Grna~----~La~~--------G~~VtavD~s~~a- 64 (198)
T PRK11207 12 KYGLTRTHSEVLEAV-KVV----------KPG---RTLDLGCGNGRNSL----YLAAN--------GYDVTAWDKNPMS- 64 (198)
T ss_pred CCCCCCCCHHHHHHH-CCC----------CCC---CEEEECCCCCHHHH----HHHHC--------CCEEEEEECCHHH-
T ss_conf 488899978999873-358----------997---47772478878699----99868--------9859999799999-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 9999998980887533456666823--475457999866418999816856
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQ--QGSTLSKDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~--~GdTL~~d~~~~~kFD~vlaNPPF 301 (674)
|++++-+......+ +|. ..|- ..-. .+..||+|+|.-=|
T Consensus 65 -l~~~~~~a~~~~l~-------~v~~~~~Dl-~~~~-~~~~yDlIlstvv~ 105 (198)
T PRK11207 65 -IANLERIKAAENLD-------NLHTRVVDL-NNLT-FDGEYDFILSTVVL 105 (198)
T ss_pred -HHHHHHHHHHCCCC-------EEEEEEECC-CCCC-CCCCCCEEEEEEEE
T ss_conf -99999999875998-------246562031-2388-77770589786452
No 120
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=84.84 E-value=2.9 Score=21.15 Aligned_cols=99 Identities=10% Similarity=0.051 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
.|++-....++-.|.++| ...+..+|+|--||||=+-. ..-++- +. ..++++.|.+++...
T Consensus 55 ~g~tis~P~~~a~ml~~L----------~l~~~~~VLeIGtGsGY~tA-lla~lv---g~-----~g~V~siE~~~~l~~ 115 (214)
T PRK13942 55 YGQTISAIHMVAIMCELL----------DLDEGQKVLEIGTGSGYHAA-VVAEIV---GK-----SGKVTTIERIPELAE 115 (214)
T ss_pred CCCEECHHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHHH-HHHHHH---CC-----CCCEEEEECCHHHHH
T ss_conf 997887499999999972----------79999979996799529999-999974---76-----785799971799999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9999989808875334566668234754579998664189998168
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674)
.|+.|+--.|.+. -.+..||-.. ..-....||.|+..-
T Consensus 116 ~A~~~l~~~~~~n-------v~~~~gdg~~-G~~~~apfD~Iiv~a 153 (214)
T PRK13942 116 KAKKNLKKLGYEN-------VEVILGDGTK-GYEENAPYDRIYVTA 153 (214)
T ss_pred HHHHHHHHHCCCC-------EEEEECCCCC-CCCCCCCCCEEEEEE
T ss_conf 9999998637687-------5898567566-784459812799985
No 121
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=83.27 E-value=1.9 Score=22.38 Aligned_cols=157 Identities=15% Similarity=0.095 Sum_probs=83.7
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCC--C
Q ss_conf 7764031176654046899999999985310053332255046666788999999989808875334566668-234--7
Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQ--G 279 (674)
Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N-I~~--G 279 (674)
+-.+.+|+|--||||=|=+. +.+ .+ -++-+.+|.+...++|++..-= . +...| +.+ |
T Consensus 52 ~l~G~~vlDAGCGtGllsi~-------LAk-~G----A~V~A~DIS~~mv~~A~~r~~~--~------~~~~nl~~FeV~ 111 (224)
T TIGR02021 52 SLKGKKVLDAGCGTGLLSIE-------LAK-RG----AIVKAVDISEQMVELARERAEK--E------DEAGNLVEFEVN 111 (224)
T ss_pred CCCCCEEEECCCCCCHHHHH-------HHH-CC----CEEEEEHHHHHHHHHHHHHCCC--C------CCCCCCCEEEEC
T ss_conf 98767777558893154498-------884-79----8686623768999999862100--2------101670035453
Q ss_pred CCCCCCCCCCCEEEEEEEC-----CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 5457999866418999816-----85676531000111234422666653577774770659999999996146657880
Q gi|254780836|r 280 STLSKDLFTGKRFHYCLSN-----PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGG 354 (674)
Q Consensus 280 dTL~~d~~~~~kFD~vlaN-----PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~gg 354 (674)
|=++.+ +.+||+|||= -|= +.-.+.+..-.-. ...|----..|+. .++=.+|+|-+|=|-. .
T Consensus 112 Dl~s~~---~G~fD~VV~mDvlIHYp~----~d~~~~l~~Lasl-t~~~~~ftfAP~T--~~l~~~~~IG~lFP~s---~ 178 (224)
T TIGR02021 112 DLESLE---LGKFDAVVAMDVLIHYPA----EDIAKALEHLASL-TKERVIFTFAPKT--AYLAFLKAIGELFPRS---D 178 (224)
T ss_pred CHHHHC---CCCCCEEEEEHHHHHCCH----HHHHHHHHHHHHH-HCCCEEEEECCCC--HHHHHHHHHHHCCCCC---C
T ss_conf 044413---898555675212232022----2279999998874-3586489867876--7899999851027889---8
Q ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHC----CCEEEEEECCCCCCCCCC
Q ss_conf 799973897134776443268999999884----946888317677655788
Q gi|254780836|r 355 RAAIVLSSSPLFNGRAGSGESEIRRWLLEN----DLIEAIVALPTDLFFRTN 402 (674)
Q Consensus 355 r~aIV~ngs~LF~G~agsGEs~IRk~lie~----d~ieaII~LP~~lFynTg 402 (674)
|.-.+-+++ +.+++|-|=+- ||==.=.++=++-||+|-
T Consensus 179 R~t~~~~h~----------~~~~~R~l~~~eallG~~i~~~~~vS~gFY~S~ 220 (224)
T TIGR02021 179 RATAIYLHP----------EKDLERALGELEALLGWKISKEGRVSTGFYISM 220 (224)
T ss_pred CCCEEEECC----------CCHHHHHHHHHHHHHCCEEEEECCEEHHHHHHH
T ss_conf 885152078----------603889976676663315663110322435567
No 122
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=82.91 E-value=3.5 Score=20.63 Aligned_cols=100 Identities=11% Similarity=0.026 Sum_probs=60.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
.|++-....++-.|.++| ...+..+|++--||||=.- +..-++- +. ...+|+.|+.++...
T Consensus 51 ~~~tis~P~~~a~ml~~L----------~~~~~~~VLeIGtGsGY~t-Alla~l~---~~-----~g~V~siE~~~~L~~ 111 (205)
T PRK13944 51 AGATISAPHMVAMMCELI----------EPRPGMKILEVGTGSGYQA-AVCAEAI---ER-----RGKVYTVEIVKELAI 111 (205)
T ss_pred CCCEECHHHHHHHHHHHH----------CCCCCCEEEEECCCCCHHH-HHHHHHH---CC-----CCEEEEEECCHHHHH
T ss_conf 998997799999999970----------6899998999789851999-9999983---74-----771799953699999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 9999989808875334566668234754579998664189998168
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNP 299 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNP 299 (674)
.|+.|+.-.|.... -.+..||-..- .-....||.|+..-
T Consensus 112 ~A~~~l~~l~~~n~------v~v~~gdg~~G-~~~~apfD~Iiv~a 150 (205)
T PRK13944 112 YAAQNIERLGYWGV------VEVYHGDGKRG-LEKHAPFDAIIVTA 150 (205)
T ss_pred HHHHHHHHCCCCCC------CEEEECCCCCC-CCCCCCCCEEEEEE
T ss_conf 99999998598633------06797655657-74349804899985
No 123
>PRK01581 speE spermidine synthase; Validated
Probab=82.64 E-value=2.4 Score=21.68 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=53.7
Q ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 04666678899999998980887533456666823475457999866418999816856765310001112344226666
Q gi|254780836|r 243 HGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELG 322 (674)
Q Consensus 243 yGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~ 322 (674)
-=.|+.|+.-.+|+.+-.|..++.+...+.--++..+|.+.-=.-...+||+|+..-|= ++.-.+.+-+
T Consensus 167 TLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDvIIVDlPD-----P~n~~L~KLY------ 235 (363)
T PRK01581 167 DLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDVIIIDFPD-----PATELLSTLY------ 235 (363)
T ss_pred EEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCEEEEECCC-----CCCHHHHHHH------
T ss_conf 89956999999875197998751200149804999210899986167544289995899-----9862466673------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 535777747706599999999961466578807999738971347764
Q gi|254780836|r 323 RFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 (674)
Q Consensus 323 Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~a 370 (674)
| -.|-..+-..|.+ +|+ ++|-.+||.|.-.|
T Consensus 236 ---------S---~eFY~Ll~~~La~----dG~-~vVQSTSPyfApka 266 (363)
T PRK01581 236 ---------T---SELFARIATFLTE----DGA-FVCQSNSPADAPLV 266 (363)
T ss_pred ---------H---HHHHHHHHHHCCC----CCE-EEEEECCCCCCCCC
T ss_conf ---------5---9999999986198----853-99960797657623
No 124
>PRK00811 spermidine synthase; Provisional
Probab=82.55 E-value=3 Score=21.11 Aligned_cols=144 Identities=17% Similarity=0.207 Sum_probs=72.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989-80887533456666823475457999
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.|+=---|.||-+-+..+| ..+ ..+--.|+.++...+|+--+- +++. ...+.--++..+|...-=.
T Consensus 81 ~VLIiGGGDGg~~rE~lkh-------~~v---~~v~~VeiD~~Vi~~~~~~lp~~~~~---~~~dprv~~~~~Dg~~fv~ 147 (283)
T PRK00811 81 KVLIIGGGDGGTLREVLKH-------PSV---EKITMVEIDERVVEMSRKYLPEISGG---AWDDPRVELVIGDGVKFVR 147 (283)
T ss_pred EEEEECCCCHHHHHHHHCC-------CCC---CEEEEEECCHHHHHHHHHHHHHHHHH---HCCCCCEEEEHHHHHHHHH
T ss_conf 4899568747999998427-------885---67999946899999999983886313---3029715998278999998
Q ss_pred CCCCEEEEEEEC--CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 866418999816--856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r 287 FTGKRFHYCLSN--PPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674)
Q Consensus 287 ~~~~kFD~vlaN--PPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674)
-...+||+|+.. .|.|-. ..-+ + --|.+.+-..|++ +| +.|+-.|||
T Consensus 148 ~~~~~yDvII~D~tDP~gpa------------~~Lf-----------t---~~Fy~~~~~~L~~----~G-i~v~Q~~sp 196 (283)
T PRK00811 148 ETENSFDVIIVDSTDPVGPA------------EGLF-----------T---KEFYENCKRALKE----GG-IFVAQSESP 196 (283)
T ss_pred HCCCCCCEEEEECCCCCCHH------------HHHC-----------C---HHHHHHHHHHCCC----CC-EEEECCCCH
T ss_conf 45235548998089988644------------5534-----------5---9999999985399----95-899927983
Q ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE
Q ss_conf 347764432689999998849468883176776557886169
Q gi|254780836|r 365 LFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY 406 (674)
Q Consensus 365 LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~ 406 (674)
+|.... -..|.+-|=+. -|.=..|.+-||||
T Consensus 197 ~~~~~~---~~~~~~~l~~~--------F~~v~~y~~~vPty 227 (283)
T PRK00811 197 FLQADE---IKDLHKKLREV--------FPIVRPYQAAVPTY 227 (283)
T ss_pred HHCHHH---HHHHHHHHHHH--------CCCEEEEEEECCCC
T ss_conf 206999---99999999986--------88668999955568
No 125
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=82.51 E-value=2.7 Score=21.41 Aligned_cols=213 Identities=21% Similarity=0.212 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH
Q ss_conf 79999999973178401101387764031176654046899999999985310053332255046666788999999989
Q gi|254780836|r 181 RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML 260 (674)
Q Consensus 181 R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl 260 (674)
|++..=|+++|-. .... .-...+|.|--||||= |+.+ +.+..+ ..+++.-|+.+.+.+.|+...=
T Consensus 17 r~~~~~Ll~~L~~----~~~~-~~~~~~vLd~GcGTG~-~t~~---l~~~~~------~~~~~a~D~~~~ml~~a~~~~~ 81 (272)
T TIGR02072 17 REMAKRLLALLKE----KRPS-HFEPASVLDIGCGTGY-LTRA---LLKRFP------QAELIALDISEEMLAQAKEKLS 81 (272)
T ss_pred HHHHHHHHHHHHH----CCCC-CCCCCCEEEECCCCHH-HHHH---HHHHCC------CCEEHHHHCCHHHHHHHHHHCC
T ss_conf 9999999998874----0765-4455435651268548-9999---998688------0012333325678999997446
Q ss_pred ----HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCE--EEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf ----8088753345666682347545799986641--8999816856765310001112344226666535777747706
Q gi|254780836|r 261 ----IRRLESDPRRDLSKNIQQGSTLSKDLFTGKR--FHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDG 334 (674)
Q Consensus 261 ----i~g~~~d~~~~~~~NI~~GdTL~~d~~~~~k--FD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg 334 (674)
.+.. ..-....||-=.- .+.+.+ ||.|+||-=+ -|=.+..
T Consensus 82 ~GWW~~~~-------~~~~f~~gD~E~l-~~~~~~~~~DLI~Sn~a~--QW~~~~~------------------------ 127 (272)
T TIGR02072 82 EGWWQKNL-------KAVQFICGDIEKL-PLEDSSFKFDLIVSNLAL--QWCDDLS------------------------ 127 (272)
T ss_pred CCCCCCCC-------HHHHHHHHHHHHC-CCCCCCCEEEHHHHHHHH--HHCCCHH------------------------
T ss_conf 78865760-------4566666377717-887663034127563588--7104788------------------------
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHC----CCEEEEEECC--C-----CCCCCCCC
Q ss_conf 59999999996146657880799973897134776443268999999884----9468883176--7-----76557886
Q gi|254780836|r 335 SMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLEN----DLIEAIVALP--T-----DLFFRTNI 403 (674)
Q Consensus 335 ~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~----d~ieaII~LP--~-----~lFynTgI 403 (674)
-+|.++-+.||+ ||..+. |++ +.|+ =.|||+---.- | +..++|| + .++-++|-
T Consensus 128 --~~l~~l~~~lk~----gG~l~F----Stf---~~~~-l~El~~~~~~~~~~ID--~~~~~~~y~~~~~~~~~l~~~~f 191 (272)
T TIGR02072 128 --QALSELARVLKP----GGLLAF----STF---GPGT-LKELRQSFGQVSELID--ERSHGLRYLSLDELKALLKNDGF 191 (272)
T ss_pred --HHHHHHHHHCCC----CCEEEE----EEC---CCHH-HHHHHHHHHHHHHHHC--CCCCCCCCCCHHHHHHHHHHCCC
T ss_conf --999999975287----968998----613---5413-4999999999997407--65467899898999999861598
Q ss_pred CEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCC-----C------CCCCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 169999946887434883899723677657640466-----4------4206989999999999721025410
Q gi|254780836|r 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGK-----K------RRIINDDQRRQILDIYVSRENGKFS 465 (674)
Q Consensus 404 ~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~-----K------r~~l~~~~i~~Iv~~y~~f~e~e~s 465 (674)
. ...+... .=.+-|=|..+...-+|+.|. + +...+..++....+.|..+-.++-.
T Consensus 192 ~--~~~~~~~-----~~~l~F~~~~~~l~~lK~~Ga~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~g 257 (272)
T TIGR02072 192 E--LLKLEEE-----LITLSFDDPLDVLRHLKKTGANGLSQGSVTSENRGLWTRKQLKAFLERYEQEFQPGQG 257 (272)
T ss_pred C--EEEEEEE-----EEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 4--1578886-----5652357889999998874324246773021456667847789999998862389986
No 126
>KOG0820 consensus
Probab=82.42 E-value=3.7 Score=20.51 Aligned_cols=105 Identities=16% Similarity=0.267 Sum_probs=61.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 27665753681799999999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 170 VSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 170 ~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
.++.-|||++-+.. ....|+ .. ..-....+|..---|||.|-.. +.+.++ .+-..|+.|
T Consensus 32 fnkd~GQHilkNp~--v~~~I~-~k------a~~k~tD~VLEvGPGTGnLT~~----lLe~~k--------kVvA~E~Dp 90 (315)
T KOG0820 32 FNKDFGQHILKNPL--VIDQIV-EK------ADLKPTDVVLEVGPGTGNLTVK----LLEAGK--------KVVAVEIDP 90 (315)
T ss_pred CCCCCCHHHHCCHH--HHHHHH-HC------CCCCCCCEEEEECCCCCHHHHH----HHHHCC--------EEEEEECCC
T ss_conf 55430145554778--899998-60------4789987799957987789999----997208--------489994080
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 8899999998980887533456666823475457999866418999816856765
Q gi|254780836|r 250 ETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKK 304 (674)
Q Consensus 250 ~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~ 304 (674)
...+-- .-..+|.+. ...-.|..||-|..|. -.||.|++|-||.++
T Consensus 91 rmvael--~krv~gtp~----~~kLqV~~gD~lK~d~---P~fd~cVsNlPyqIS 136 (315)
T KOG0820 91 RMVAEL--EKRVQGTPK----SGKLQVLHGDFLKTDL---PRFDGCVSNLPYQIS 136 (315)
T ss_pred HHHHHH--HHHHCCCCC----CCEEEEEECCCCCCCC---CCCCEEECCCCCCCC
T ss_conf 789999--998669986----5604688503125788---510311226985336
No 127
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=81.44 E-value=4 Score=20.28 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
||.|- +.-|++++.. . .++...+|.|--||.|-.|....+.+.+. ....+||-++.......|-
T Consensus 66 ~y~pl--~~~i~~~~~~----~---~~~~~~~ilD~GCGEGyYl~~l~~~l~~~-------~~~~~~G~DiSK~ai~~Aa 129 (272)
T PRK11088 66 HYQPL--RDAVANLLAE----R---LDEKATAILDIGCGEGYYTHALADALPEV-------TTCQLFGLDISKVAIKYAA 129 (272)
T ss_pred CCHHH--HHHHHHHHHH----H---CCCCCCEEEEECCCCCHHHHHHHHHHHCC-------CCCCEEEEECCHHHHHHHH
T ss_conf 84799--9999999997----5---67778648881587778999999974115-------7873799811799999996
Q ss_pred HHHHHHCCCCCCCCCCCCCCC--CCCCCCCCCCCCCEEEEEEEC
Q ss_conf 998980887533456666823--475457999866418999816
Q gi|254780836|r 257 AGMLIRRLESDPRRDLSKNIQ--QGSTLSKDLFTGKRFHYCLSN 298 (674)
Q Consensus 257 ~nMli~g~~~d~~~~~~~NI~--~GdTL~~d~~~~~kFD~vlaN 298 (674)
+.. .++. .+| +.+=.+.+..+|+|++-
T Consensus 130 -----k~~---------~~~~~~Va~-~~~lP~~d~s~D~vl~v 158 (272)
T PRK11088 130 -----KRY---------PQVTFCVAS-SHRLPFADQSLDAIIRI 158 (272)
T ss_pred -----CCC---------CCCEEEEEE-CCCCCCCCCCCEEEEEE
T ss_conf -----268---------885499961-00188876654089998
No 128
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=81.24 E-value=4.1 Score=20.24 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=48.2
Q ss_pred CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77640311766540468999999999853100533322550466667889999999898088753345666682347545
Q gi|254780836|r 203 PGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTL 282 (674)
Q Consensus 203 p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL 282 (674)
-+.+.||..--|.-|-=|.+ ++.+-+ ...++|.|+|..+...++.. +. ..+|..|+-|
T Consensus 41 ~~~ikSilE~GcNIGlNL~A----Lk~L~P------~~~l~gIEIN~~A~~~lk~~--~~----------~~~i~n~SIl 98 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAA----LKRLLP------FKHIYGVEINEYAVEKAKAY--LP----------NINIIQGSLF 98 (204)
T ss_pred CCCCCEEEEECCCCCHHHHH----HHHHCC------CCEEEEEECCHHHHHHHHHH--CC----------CCEEEECCCC
T ss_conf 78888268966884776999----987487------44049995399999999865--89----------7269965334
Q ss_pred CCCCCCCCEEEEEEEC
Q ss_conf 7999866418999816
Q gi|254780836|r 283 SKDLFTGKRFHYCLSN 298 (674)
Q Consensus 283 ~~d~~~~~kFD~vlaN 298 (674)
. .++..+||.|++.
T Consensus 99 d--~~~~~~~DLv~t~ 112 (204)
T TIGR03587 99 D--PFKDNFFDLVLTK 112 (204)
T ss_pred C--CCCCCCEEEEEEE
T ss_conf 6--6778742389983
No 129
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=81.19 E-value=4.1 Score=20.23 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=81.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
-..|---|.++...|..+= -.++..|.+--.|||-|-..-...+ ++ ..+++.-|+-.+.+
T Consensus 73 R~tQiIyPKD~~~I~~~~g-----------i~pg~rVlEAGtGSG~lt~~La~~v---g~------~G~v~tyE~r~d~~ 132 (256)
T COG2519 73 RRTQIIYPKDAGYIVARLG-----------ISPGSRVLEAGTGSGALTAYLARAV---GP------EGHVTTYEIREDFA 132 (256)
T ss_pred CCCCEECCCCHHHHHHHCC-----------CCCCCEEEECCCCCHHHHHHHHHHH---CC------CCEEEEEEECHHHH
T ss_conf 7873335777999998709-----------9988789981568059999999964---88------84599999527899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674)
..|+-|+--.|+... --++.||. ++..+. +.||.|+..-|= +|
T Consensus 133 k~A~~Nl~~~~l~d~------v~~~~~Dv-~~~~~~-~~vDav~LDmp~--PW--------------------------- 175 (256)
T COG2519 133 KTARENLSEFGLGDR------VTLKLGDV-REGIDE-EDVDAVFLDLPD--PW--------------------------- 175 (256)
T ss_pred HHHHHHHHHHCCCCC------EEEEECCC-CCCCCC-CCCCEEEECCCC--HH---------------------------
T ss_conf 999999998424561------37870540-002465-546779975898--48---------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 065999999999614665788079997389
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
-.|+|.-..|++ ||++++..|-
T Consensus 176 ----~~le~~~~~Lkp----gg~~~~y~P~ 197 (256)
T COG2519 176 ----NVLEHVSDALKP----GGVVVVYSPT 197 (256)
T ss_pred ----HHHHHHHHHHCC----CCEEEEECCC
T ss_conf ----999999987179----9679998397
No 130
>KOG1122 consensus
Probab=80.78 E-value=3.1 Score=21.04 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=58.0
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
.|.++..|.|.||--||=-+ ||..+-++. ..+|.-+.|..-...-++|+.-.|++.-.. -..-|..
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt----~IAalMkn~-----G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv-----~n~D~~e 303 (460)
T KOG1122 238 DPQPGERILDMCAAPGGKTT----HIAALMKNT-----GVIFANDSNENRLKSLKANLHRLGVTNTIV-----SNYDGRE 303 (460)
T ss_pred CCCCCCEECCHHCCCCCHHH----HHHHHHCCC-----CEEEECCCCHHHHHHHHHHHHHHCCCCEEE-----ECCCCCC
T ss_conf 79988711212107995077----899987277-----469961354377999998899748774489-----7367632
Q ss_pred CCCCCCCCCEEEEEEECCCCC
Q ss_conf 579998664189998168567
Q gi|254780836|r 282 LSKDLFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 282 L~~d~~~~~kFD~vlaNPPFg 302 (674)
+.+--|++ .||.||-.-|-+
T Consensus 304 f~~~~~~~-~fDRVLLDAPCS 323 (460)
T KOG1122 304 FPEKEFPG-SFDRVLLDAPCS 323 (460)
T ss_pred CCCCCCCC-CCCEEEECCCCC
T ss_conf 55333676-423145348777
No 131
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=80.35 E-value=4.3 Score=20.05 Aligned_cols=291 Identities=17% Similarity=0.233 Sum_probs=136.9
Q ss_pred CCCCCCCCHHHHHH--HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 66575368179999--9999731784011013877640311766540468999999999853100533322550466667
Q gi|254780836|r 172 EGAEDFMTPRDVVH--LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 172 ~~aGeffTPR~Vi~--Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
+.+-=||-|+.-.. |-|..+ ..+. ......|+|+-|||| +.+..|..+.... .++=.|+||
T Consensus 24 ~~~pVFYNP~m~~NRDlsV~~l-----~~~~--~~~~~~v~DalsatG---iRgIRya~E~~~~-------~v~lNDisp 86 (380)
T COG1867 24 KRAPVFYNPAMEFNRDLSVLVL-----KAFG--KLLPKRVLDALSATG---IRGIRYAVETGVV-------KVVLNDISP 86 (380)
T ss_pred CCCCCEECCHHHHCCCHHHHHH-----HHHH--CCCCEEEEECCCCCC---HHHHHHHHHCCCC-------EEEECCCCH
T ss_conf 7786022804663642668999-----9860--347738864355533---6675453425761-------799715898
Q ss_pred HHHHHHHHHHHHH-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 8899999998980-887533456666823-47545799986641899981685676531000111234422666653577
Q gi|254780836|r 250 ETHAVCVAGMLIR-RLESDPRRDLSKNIQ-QGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPG 327 (674)
Q Consensus 250 ~tyaIak~nMli~-g~~~d~~~~~~~NI~-~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~g 327 (674)
.++.+.+-|..+. +.+.. .|. -.|.|-...+ ..||+|=-. |||.+
T Consensus 87 ~Avelik~Nv~~N~~~~~~-------v~n~DAN~lm~~~~--~~fd~IDiD-PFGSP----------------------- 133 (380)
T COG1867 87 KAVELIKENVRLNSGEDAE-------VINKDANALLHELH--RAFDVIDID-PFGSP----------------------- 133 (380)
T ss_pred HHHHHHHHHHHHCCCCCCE-------EECCHHHHHHHHCC--CCCCEEECC-CCCCC-----------------------
T ss_conf 9999999999834766632-------55342899987258--876378138-99997-----------------------
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHC----------------------
Q ss_conf 774770659999999996146657880799973-897134776443268999999884----------------------
Q gi|254780836|r 328 LPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLEN---------------------- 384 (674)
Q Consensus 328 lP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~---------------------- 384 (674)
. =|+.-.+..++. ||-++|-- ..|||- |. .-++-.|||....
T Consensus 134 a--------PFlDaA~~s~~~----~G~l~vTATD~a~L~-G~--~p~~c~rkY~a~~~~~~~~hE~glR~Lig~vaR~A 198 (380)
T COG1867 134 A--------PFLDAALRSVRR----GGLLCVTATDTAPLC-GS--YPRKCRRKYGAVPLKTEFCHEVGLRILIGYVARTA 198 (380)
T ss_pred C--------HHHHHHHHHHHC----CCEEEEEECCCCCCC-CC--CHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 2--------679999997222----988999851552102-78--80789998536267786226788999999999999
Q ss_pred ----CCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCC----CCCCCCCHHHHHHHHHHH
Q ss_conf ----946888317677655788616999994688743488389972367765764046----644206989999999999
Q gi|254780836|r 385 ----DLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEG----KKRRIINDDQRRQILDIY 456 (674)
Q Consensus 385 ----d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G----~Kr~~l~~~~i~~Iv~~y 456 (674)
--++-++++-.+ || +=++-+-+...|+ |-+..+ ++| ..+|- +++..+
T Consensus 199 Akyd~~i~Plls~~~d-hY-------~Rvfv~v~rga~~-------ad~~~e---~~g~~~~c~~cg-------~~~~~~ 253 (380)
T COG1867 199 AKYDKAIEPLLSLSID-HY-------VRVFVEVRRGARR-------ADKLLE---NLGYIYHCSRCG-------EIVGSF 253 (380)
T ss_pred HHHCCCCEEEEEEEEC-EE-------EEEEEEECCCCHH-------HHHHHH---HCCCEEECCCCC-------CEECCC
T ss_conf 8635661367773533-18-------9999998147305-------778997---547078826641-------000355
Q ss_pred HHCCC-CCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72102-54104744466305789972044212100888997655322110028454889999999999865320014567
Q gi|254780836|r 457 VSREN-GKFSRMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITWRKLSPLHQSFWLDILKPMMQQIYPYGWAESF 535 (674)
Q Consensus 457 ~~f~e-~e~ski~~~~~Fgy~~vtverplr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (674)
...++ .+.| |+ ++.+--||++-=.-+++-++.+.....-..+.. +......++.+.+..... .
T Consensus 254 ~~~~~~c~~C--------g~-~~~~~GPlW~GpL~d~~f~e~~l~~~~~~~l~~--~~~~~klL~~i~~E~~~~-----p 317 (380)
T COG1867 254 REVDEKCPHC--------GG-KVHLAGPLWLGPLHDEEFIEEMLEIAEGLELGT--KKRALKLLKLIKKELDIS-----P 317 (380)
T ss_pred CCCCCCCCCC--------CC-CCEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCCC-----C
T ss_conf 5444557766--------65-200225741475467999999998764022320--799999999887650788-----6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 776544323443587777189999986542077899
Q gi|254780836|r 536 VKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRA 571 (674)
Q Consensus 536 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~d~~a 571 (674)
.+..+. .-..+++.+++-+..++++|...-=+|
T Consensus 318 ~fydl~---~ias~l~~s~p~~~~vv~~L~~~G~~a 350 (380)
T COG1867 318 LFYDLH---RIASKLGLSAPPLEEVVEALRSAGYEA 350 (380)
T ss_pred EEEEHH---HHHHHHCCCCCCHHHHHHHHHHCCCEE
T ss_conf 277789---999985789999899999998547216
No 132
>pfam02005 TRM N2,N2-dimethylguanosine tRNA methyltransferase. This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA. The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs. The enzyme is found in both eukaryotes and archaebacteria
Probab=78.31 E-value=5 Score=19.64 Aligned_cols=80 Identities=14% Similarity=0.180 Sum_probs=52.4
Q ss_pred CCCCCCCCHH-----HHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 6657536817-----99999999731784011013877640311766540468999999999853100533322550466
Q gi|254780836|r 172 EGAEDFMTPR-----DVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674)
Q Consensus 172 ~~aGeffTPR-----~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674)
+++-=||-|+ ++.=+++..+-. .........+|+|+-+||| +.+..|.++.... ..++-.|
T Consensus 16 ~~~pVFYNP~~~~NRDlsvl~i~~~~~-----~~~~~~~~~~iLDalsasG---iR~iRya~E~~~~------~~V~~ND 81 (375)
T pfam02005 16 SKNPVFYNPRMEFNRDLSVTVIRQLNL-----LHKKLGRGIIVLDALSASG---IRAIRFALEVPGV------EEVFAND 81 (375)
T ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHH-----HHHCCCCCCEEEECCCCCH---HHHHHHHHHCCCC------CEEEEEC
T ss_conf 878511585010232199999999998-----6430258866975467541---9999999746998------6699955
Q ss_pred CCHHHHHHHHHHHHHHCCC
Q ss_conf 6678899999998980887
Q gi|254780836|r 247 LEPETHAVCVAGMLIRRLE 265 (674)
Q Consensus 247 in~~tyaIak~nMli~g~~ 265 (674)
+||....+.+.|+-+.++.
T Consensus 82 i~~~a~~~i~~N~~lN~~~ 100 (375)
T pfam02005 82 ISPKAVELIKENVKLNEVE 100 (375)
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 9989999999988865998
No 133
>KOG1541 consensus
Probab=76.89 E-value=3.9 Score=20.38 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=41.4
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
..-|+|-.|||| |+.+. +. + ......|.+++|.+..+|.... +.| + ..++|-=.-=
T Consensus 51 ~~~iLDIGCGsG--LSg~v--L~----~----~Gh~wiGvDiSpsML~~a~~~e-~eg---d--------lil~DMG~Gl 106 (270)
T KOG1541 51 SGLILDIGCGSG--LSGSV--LS----D----SGHQWIGVDISPSMLEQAVERE-LEG---D--------LILCDMGEGL 106 (270)
T ss_pred CCEEEEECCCCC--CCHHE--EC----C----CCCEEEEECCCHHHHHHHHHHH-HHC---C--------EEEEECCCCC
T ss_conf 717998345777--43200--21----6----8955886228989999999766-404---7--------6631247887
Q ss_pred CCCCCEEEEEEECCC
Q ss_conf 986641899981685
Q gi|254780836|r 286 LFTGKRFHYCLSNPP 300 (674)
Q Consensus 286 ~~~~~kFD~vlaNPP 300 (674)
+|...+||-+++=--
T Consensus 107 pfrpGtFDg~ISISA 121 (270)
T KOG1541 107 PFRPGTFDGVISISA 121 (270)
T ss_pred CCCCCCCCEEEEEEE
T ss_conf 889974124788620
No 134
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=76.63 E-value=5.6 Score=19.34 Aligned_cols=73 Identities=19% Similarity=0.179 Sum_probs=44.6
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76403117665404689999999998531005333225504666678899999998980887533456666823475457
Q gi|254780836|r 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS 283 (674)
Q Consensus 204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~ 283 (674)
.++.+|.|--||-|||...|.++. + ..+-|.-++.+-++.|+.- +.|.+. +|...|-
T Consensus 166 ~~G~~VLeIGcGWGgla~~aA~~~-------g----~~VtgiTlS~eQ~~~a~~r--~~gl~v--------~v~l~DY-- 222 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY-------G----VSVVGVTISAEQQKLAQER--CAGLPV--------EIRLQDY-- 222 (383)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-------C----CEEEEEECCHHHHHHHHHH--HCCCCC--------EEEECCH--
T ss_conf 999979885787499999999974-------9----7599985889999999999--738987--------8997152--
Q ss_pred CCCCCCCEEEEEEECCCC
Q ss_conf 999866418999816856
Q gi|254780836|r 284 KDLFTGKRFHYCLSNPPF 301 (674)
Q Consensus 284 ~d~~~~~kFD~vlaNPPF 301 (674)
.....+||.|+|==-|
T Consensus 223 --Rd~~g~fD~IvSIeM~ 238 (383)
T PRK11705 223 --RDLNGQFDRIVSVGMF 238 (383)
T ss_pred --HHCCCCCCEEEEEEHH
T ss_conf --4436773559997148
No 135
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=76.49 E-value=5.6 Score=19.31 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=74.0
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
.|| ..|.+--.|||+|-..-...+. ...++|.-|+..+-+.+|+-|+--+|..... .+.++|-
T Consensus 101 ~PG--~~VlEaGtGSGsLT~~Laravg---------p~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v------~~~~rDv 163 (309)
T pfam08704 101 KPG--SVVCESGTGSGSLSHAIARTVA---------PTGHLYTFEFHEQRADKAREEFREHGLDSLV------TVTHRDV 163 (309)
T ss_pred CCC--CEEEEECCCCCHHHHHHHHHHC---------CCCEEEEEECCHHHHHHHHHHHHHCCCCCCE------EEEECCH
T ss_conf 999--9999836784299999999748---------8865999844789999999999874987505------8898520
Q ss_pred CCCCCCC---CCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 5799986---6418999816856765310001112344226666535777747706599999999961466578807999
Q gi|254780836|r 282 LSKDLFT---GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI 358 (674)
Q Consensus 282 L~~d~~~---~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI 358 (674)
. .+.|. ...+|.|+-.-|= +| .-|-|..+.||.. ||++++
T Consensus 164 ~-~~gf~~~~~~~~D~VfLDlp~--PW-------------------------------~ai~~~~~~Lk~~---Gg~l~~ 206 (309)
T pfam08704 164 C-KSGFDTEVSNKADAVFLDLPA--PW-------------------------------EAIPHAAKALKVE---GGRLCS 206 (309)
T ss_pred H-CCCCCCCCCCCCCEEEECCCC--HH-------------------------------HHHHHHHHHHCCC---CCEEEE
T ss_conf 0-136664456643589975899--79-------------------------------9889999860689---968999
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 73897134776443268999999884946
Q gi|254780836|r 359 VLSSSPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 359 V~ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674)
-.|- .+ + =+.+-+.|-+++|.
T Consensus 207 f~P~---ie----Q-v~r~~~aL~~~gF~ 227 (309)
T pfam08704 207 FSPC---IE----Q-VQRTCLALAALGFT 227 (309)
T ss_pred ECCC---HH----H-HHHHHHHHHHCCCC
T ss_conf 9198---99----9-99999999977997
No 136
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=73.50 E-value=6.7 Score=18.82 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=73.7
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1176654046899999999985310053332255046666788999999989-808875334566668234754579998
Q gi|254780836|r 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML-IRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 209 IyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl-i~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
|+=---|.||.+-+..+| .. ..++--.|+.++.-.+|+.-+- +++. ..+.--++..+|-..-=.-
T Consensus 79 VLIiGGGDG~~~rEvlk~-------~~---v~~v~~VEiD~~Vv~~~~~~lp~~~~~----~~dprv~l~~~Dg~~~l~~ 144 (240)
T pfam01564 79 VLIIGGGDGGALREVVKH-------PS---VEKITLVEIDEKVIEFSKKFLPSLAGG----FDDPRVKVVIGDGFKFLKD 144 (240)
T ss_pred EEEECCCCHHHHHHHHCC-------CC---CCEEEEECCCHHHHHHHHHHHHHHCCC----CCCCCEEEEEHHHHHHHHH
T ss_conf 676458657999998567-------99---538999757889999999987985243----4798559998168999985
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
Q ss_conf 66418999816856765310001112344226666535777747706599999999961466578807999738971347
Q gi|254780836|r 288 TGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFN 367 (674)
Q Consensus 288 ~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~ 367 (674)
...+||+|+...|--. .. . .+.| +--|.+.+-..|++ ||. .++-.|||.+.
T Consensus 145 ~~~~yDvII~D~~DP~---------~~-~----~~Lf----------s~eFy~~~~~~L~~----~Gi-~v~Q~~sp~~~ 195 (240)
T pfam01564 145 YLVKFDVIIVDSTDPV---------GP-A----ENLF----------SKEFYDLLKRALKE----DGV-FVTQAESPWLH 195 (240)
T ss_pred CCCCCCEEEEECCCCC---------CH-H----HHHH----------HHHHHHHHHHHCCC----CCE-EEEECCCHHHC
T ss_conf 7254458999589976---------53-3----4442----------29999999986599----978-99924883437
Q ss_pred CCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEE---EEEEE
Q ss_conf 764432689999998849468883176776557886169---99994
Q gi|254780836|r 368 GRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATY---LWILS 411 (674)
Q Consensus 368 G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~---Iwil~ 411 (674)
... -..|.+.+=+. -|.-..|.+-|||| .|-+.
T Consensus 196 ~~~---~~~i~~~l~~~--------F~~v~~y~~~vPsy~~g~w~f~ 231 (240)
T pfam01564 196 LEL---IINILKNGKKV--------FPVVMPYVVPVPTYPSGGWGFA 231 (240)
T ss_pred HHH---HHHHHHHHHHH--------CCCCEEEEEECCCCCCCHHHEE
T ss_conf 999---99999999977--------8982699867466897830105
No 137
>pfam10923 DUF2791 Protein of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=71.12 E-value=6.4 Score=18.97 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3899999999986
Q gi|254780836|r 156 SNIYEHLIRRFGS 168 (674)
Q Consensus 156 G~iyE~LIrkFae 168 (674)
...||.|++-+++
T Consensus 111 ~knye~il~i~nd 123 (267)
T pfam10923 111 DKNYEALLQILND 123 (267)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8789999999989
No 138
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase, isomerizing; InterPro: IPR005855 Glucosamine:fructose-6-phosphate aminotransferase (2.6.1.16 from EC) catalyses the formation of glucosamine 6-phosphate and is the first and rate-limiting enzyme of the hexosamine biosynthetic pathway. The final product of the hexosamine pathway, UDP-N-acetyl glucosamine, is an active precursor of numerous macromolecules containing amino sugars. This family of sequences belong to the MEROPS peptidase family C44 (clan PB(C)), and are classified as non-peptidase homologs.; GO: 0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity, 0016051 carbohydrate biosynthetic process, 0005737 cytoplasm.
Probab=69.96 E-value=7.7 Score=18.43 Aligned_cols=39 Identities=15% Similarity=0.289 Sum_probs=16.2
Q ss_pred CCCCCCCHHHH---HHHHHHHHCCCCCHHCCCCCCCCEEECC
Q ss_conf 65753681799---9999997317840110138776403117
Q gi|254780836|r 173 GAEDFMTPRDV---VHLATALLLDPDDALFKESPGMIRTLYD 211 (674)
Q Consensus 173 ~aGeffTPR~V---i~Lmv~ll~~~~~~~~~~~p~~~~tIyD 211 (674)
+-||.|==-|| +...-+.++..|.|...-.+.....|||
T Consensus 189 G~gE~F~ASD~~All~~T~~~~~L~dGd~a~~~~d~~~~i~n 230 (628)
T TIGR01135 189 GDGENFVASDVTALLPYTRRVIYLEDGDIAILTKDGVREIYN 230 (628)
T ss_pred CCCCEEEECCHHHHHHHCCEEEEECCCCEEEEECCCEEEEEE
T ss_conf 571269833827887327889995068889980486589972
No 139
>KOG1707 consensus
Probab=69.65 E-value=8.1 Score=18.27 Aligned_cols=19 Identities=21% Similarity=0.196 Sum_probs=10.6
Q ss_pred EECCCCCCHHHHHHHHHHH
Q ss_conf 3117665404689999999
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNH 226 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~ 226 (674)
.||+-.----|||.--..+
T Consensus 248 gv~~~~ltl~GFLfL~~lf 266 (625)
T KOG1707 248 GVYERGLTLPGFLFLNTLF 266 (625)
T ss_pred HHHHCCCCCCCHHHHHHHH
T ss_conf 1210333323068888999
No 140
>KOG0919 consensus
Probab=69.50 E-value=2.1 Score=22.08 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=39.9
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11766540468999999999853100533322550466667889999999898088753345666682347545799986
Q gi|254780836|r 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFT 288 (674)
Q Consensus 209 IyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~ 288 (674)
|..--+|-|||--+- + .+..+.. .+-..++|+..-++-+-| -|+.- ....|| .||+--.|.
T Consensus 6 Vlelysg~ggmhyal-----~---~a~ipaq-iVaAiDvNtvANevY~~N--~h~~L-----~k~~~I---~~lt~kefd 66 (338)
T KOG0919 6 VLELYSGHGGMHYAL-----E---DAQIPAQ-IVAAIDVNTVANEVYAHN--YHSNL-----VKTRNI---QSLTVKEFD 66 (338)
T ss_pred HHHHHHCCCHHHHHH-----H---HHCCCHH-HEEEEECCHHHHHHHHCC--CCCCH-----HHCCCC---CEEEHHHHH
T ss_conf 335554321456567-----6---5168645-278773342677888418--54312-----201354---411286641
Q ss_pred CCEEEEEEECCCC
Q ss_conf 6418999816856
Q gi|254780836|r 289 GKRFHYCLSNPPF 301 (674)
Q Consensus 289 ~~kFD~vlaNPPF 301 (674)
.-.|+.+++-||-
T Consensus 67 ~l~~~m~lMSPpC 79 (338)
T KOG0919 67 KLQANMLLMSPPC 79 (338)
T ss_pred HCCCCEEEECCCC
T ss_conf 0145558507999
No 141
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=68.22 E-value=3.9 Score=20.35 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=46.6
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
++||--+|||=+-..|.++- -.+|..|.+|.++++++-|+-+.|.+. -.+..||.+.-+-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A------------~rViAiE~dPk~a~~a~eN~~v~g~~n-------~evv~gDA~~y~f- 94 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAA------------ERVIAIEKDPKRARLAEENLHVPGDVN-------WEVVVGDARDYDF- 94 (252)
T ss_pred CEEECCCCCCHHHHHHHHHH------------CEEEEEECCCHHHHHHHHCCCCCCCCC-------EEEEECCCCCCCC-
T ss_conf 05634688632889887532------------027887418078777650577788764-------6898055321332-
Q ss_pred CCCEEEEEEEC
Q ss_conf 66418999816
Q gi|254780836|r 288 TGKRFHYCLSN 298 (674)
Q Consensus 288 ~~~kFD~vlaN 298 (674)
+..|+|++-
T Consensus 95 --e~ADvvicE 103 (252)
T COG4076 95 --ENADVVICE 103 (252)
T ss_pred --CCCCEEHHH
T ss_conf --345340877
No 142
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=68.09 E-value=8.8 Score=18.06 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=62.9
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 27665753-68179999999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r 170 VSEGAEDF-MTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 170 ~~~~aGef-fTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
+-++-|-- =|..-..+.|++.+ .|..+.-|..---|||-+- .| +.++... ...++-.|.+
T Consensus 22 ~PrtVGaI~PsSs~lA~~M~s~I----------~pesglpVlElGPGTGV~T-ka---IL~~gv~-----~~~L~~iE~~ 82 (194)
T COG3963 22 NPRTVGAILPSSSILARKMASVI----------DPESGLPVLELGPGTGVIT-KA---ILSRGVR-----PESLTAIEYS 82 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHCC----------CCCCCCEEEEECCCCCHHH-HH---HHHCCCC-----CCCEEEEEEC
T ss_conf 97311135578579999998434----------8445976477769866768-99---9965799-----5436899827
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CCCCCEEEEEEECCCCC
Q ss_conf 7889999999898088753345666682347545799----98664189998168567
Q gi|254780836|r 249 PETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD----LFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 249 ~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d----~~~~~kFD~vlaNPPFg 302 (674)
++-+++ |.+- ....||..||...-+ .|.+..||+|+|--|+-
T Consensus 83 ~dF~~~-----L~~~-------~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 83 PDFVCH-----LNQL-------YPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred HHHHHH-----HHHH-------CCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 799999-----9975-------887513054056578778652797401688656002
No 143
>KOG1271 consensus
Probab=66.98 E-value=9.2 Score=17.92 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC--HHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999999862276657536817999999997317840--11013877640311766540468999999999853100
Q gi|254780836|r 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDD--ALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 (674)
Q Consensus 157 ~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~--~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~ 234 (674)
.+||-=|+.|-+ -| ..||-+---++-.-|+.-|..... -+-++++ .|.|--||-|.||..-.+ .
T Consensus 23 ~~Y~~El~Nfr~-hg-d~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~----~VlDLGtGNG~~L~~L~~-------e- 88 (227)
T KOG1271 23 AAYELELTNFRE-HG-DEGEVWFGEDAEERIVDWLKDLIVISRVSKQAD----RVLDLGTGNGHLLFQLAK-------E- 88 (227)
T ss_pred HHHHHHHHHCCC-CC-CCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEECCCCCHHHHHHHHH-------H-
T ss_conf 899999860366-78-763356077389999999986544411022432----116615796188999887-------1-
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCC-CCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHH
Q ss_conf 53332255046666788999999989808875334566668-2347-545799986641899981685676531000111
Q gi|254780836|r 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKN-IQQG-STLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAV 312 (674)
Q Consensus 235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~N-I~~G-dTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v 312 (674)
+. ...|-|.+..+.+.-+|+ |..-+.. .+| |++- .-+..|.+...+||+|+----| ++|
T Consensus 89 gf--~~~L~GvDYs~~AV~LA~-niAe~~~--------~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~--------DAi 149 (227)
T KOG1271 89 GF--QSKLTGVDYSEKAVELAQ-NIAERDG--------FSNEIRFQQLDITDPDFLSGQFDLVLDKGTL--------DAI 149 (227)
T ss_pred CC--CCCCCCCCCCHHHHHHHH-HHHHHCC--------CCCCEEEEEEECCCCCCCCCCEEEEEECCCE--------EEE
T ss_conf 38--888645315788999998-7887527--------8853168873225775555432389605741--------225
Q ss_pred HHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Q ss_conf 23442266665357777477065999999999614665788079997389713477644326899999988494688831
Q gi|254780836|r 313 EKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVA 392 (674)
Q Consensus 313 ~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~ 392 (674)
.-. -.+..+|-.. =+-++..++ + .||+..|- |-=||- -++-. .++++-++-.-.
T Consensus 150 sLs-~d~~~~r~~~--------Y~d~v~~ll---~----~~gifvIt---SCN~T~------dELv~-~f~~~~f~~~~t 203 (227)
T KOG1271 150 SLS-PDGPVGRLVV--------YLDSVEKLL---S----PGGIFVIT---SCNFTK------DELVE-EFENFNFEYLST 203 (227)
T ss_pred ECC-CCCCCCCEEE--------EHHHHHHCC---C----CCCEEEEE---ECCCCH------HHHHH-HHHCCCEEEEEE
T ss_conf 507-7776654344--------355686303---8----89679998---557658------99999-972597499996
Q ss_pred CCCCCC--C-CCCCCEEEEEE
Q ss_conf 767765--5-78861699999
Q gi|254780836|r 393 LPTDLF--F-RTNIATYLWIL 410 (674)
Q Consensus 393 LP~~lF--y-nTgI~t~Iwil 410 (674)
.|.-.| - .+|-.++-.++
T Consensus 204 vp~ptF~FgG~~G~tvt~vaF 224 (227)
T KOG1271 204 VPTPTFMFGGSVGSTVTSVAF 224 (227)
T ss_pred ECCCEEEECCCCCCEEEEEEE
T ss_conf 055258865621547889999
No 144
>KOG2078 consensus
Probab=63.89 E-value=3.2 Score=20.92 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=35.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLE 265 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~ 265 (674)
..|||++||-|-|-+-|... ...+|..++||+++..-+.|.-+.-++
T Consensus 251 evv~D~FaGvGPfa~Pa~kK------------~crV~aNDLNpesik~Lk~ni~lNkv~ 297 (495)
T KOG2078 251 EVVCDVFAGVGPFALPAAKK------------GCRVYANDLNPESIKWLKANIKLNKVD 297 (495)
T ss_pred CHHHHHHCCCCCCCCCHHHC------------CCEEEECCCCHHHHHHHHHHCCCCCCC
T ss_conf 13344404767433502225------------858993479978999999756536656
No 145
>TIGR01245 trpD anthranilate phosphoribosyltransferase; InterPro: IPR005940 In many widely different species, including Escherichia coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzyme is a C-terminal part of a multifunctional protein together with glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (4.1.3.27 from EC).; GO: 0004048 anthranilate phosphoribosyltransferase activity, 0000162 tryptophan biosynthetic process.
Probab=63.66 E-value=5.7 Score=19.26 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCC-CCEEECCCCCCHHH
Q ss_conf 81799999999731784011013877-64031176654046
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPG-MIRTLYDPTCGTGG 218 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~-~~~tIyDPaCGTGG 218 (674)
||-||.=+.--|.-.- ..-|. ...-+-| +|||||
T Consensus 45 t~~Ei~GfA~amr~~a-----~~~~~~~~~~lvD-~vGTGG 79 (331)
T TIGR01245 45 TPEEIAGFAKAMREHA-----VKVPGEPVEDLVD-IVGTGG 79 (331)
T ss_pred CHHHHHHHHHHHHHHC-----CCCCCCCCCCEEE-EECCCC
T ss_conf 9999999999999836-----7578888751367-501477
No 146
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=63.16 E-value=11 Score=17.45 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
+.|.=---|.||+|=+..+|. +.. ..-=.|+++.--.+|+--+-+.....+ +.-.+|..+|-..==.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~----~ve------~i~~VEID~~Vi~~ar~~l~~~~~~~~---dpRv~i~i~Dg~~~v~ 144 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL----PVE------RITMVEIDPAVIELARKYLPEPSGGAD---DPRVEIIIDDGVEFLR 144 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCC----CCC------EEEEEECCHHHHHHHHHHCCCCCCCCC---CCCEEEEECCHHHHHH
T ss_conf 769998897669999998368----843------379997088999999986667543357---9736899610799987
Q ss_pred CCCCEEEEEEECCC--CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 86641899981685--6765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r 287 FTGKRFHYCLSNPP--FGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674)
Q Consensus 287 ~~~~kFD~vlaNPP--Fg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674)
-...+||+|+.+-- -|- . .+|. +.-|.+++-+.|+++ |- .++-+|||
T Consensus 145 ~~~~~fDvIi~D~tdp~gp-----------------~----~~Lf-----t~eFy~~~~~~L~~~----Gi-~v~q~~~~ 193 (282)
T COG0421 145 DCEEKFDVIIVDSTDPVGP-----------------A----EALF-----TEEFYEGCRRALKED----GI-FVAQAGSP 193 (282)
T ss_pred HCCCCCCEEEECCCCCCCC-----------------C----CCCC-----CHHHHHHHHHHCCCC----CE-EEEECCCC
T ss_conf 4887677899858899884-----------------3----0237-----799999999862889----68-99944784
Q ss_pred CCCC
Q ss_conf 3477
Q gi|254780836|r 365 LFNG 368 (674)
Q Consensus 365 LF~G 368 (674)
.+..
T Consensus 194 ~~~~ 197 (282)
T COG0421 194 FLQD 197 (282)
T ss_pred CCCH
T ss_conf 3240
No 147
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.40 E-value=12 Score=17.14 Aligned_cols=108 Identities=11% Similarity=0.046 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 43899999999986227665753681799999999731784011013877640311766540468999999999853100
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHH 234 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~ 234 (674)
.+++|+.. +- --..|+.-...+++-.|+++| .+.+..+|.+--||||= .++..-.+ .
T Consensus 38 ~~~AY~d~----~l--pi~~gqtis~P~~vA~m~~~L----------~~~~g~~VLEIGtGsGY-~aAvla~l---~--- 94 (209)
T COG2518 38 KHLAYEDR----AL--PIGCGQTISAPHMVARMLQLL----------ELKPGDRVLEIGTGSGY-QAAVLARL---V--- 94 (209)
T ss_pred HCCCCCCC----CC--CCCCCCEECCCHHHHHHHHHH----------CCCCCCEEEEECCCCHH-HHHHHHHH---H---
T ss_conf 42564687----64--478993505747999999974----------89999868887778309-99999997---4---
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEECC
Q ss_conf 5333225504666678899999998980887533456666823475457999866-4189998168
Q gi|254780836|r 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNP 299 (674)
Q Consensus 235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~-~kFD~vlaNP 299 (674)
.++|..|+.++-...|+.|+-.-|... -.+++||--. .++. ..||.|+.+=
T Consensus 95 -----~~V~siEr~~~L~~~A~~~L~~lg~~n-------V~v~~gDG~~--G~~~~aPyD~I~Vta 146 (209)
T COG2518 95 -----GRVVSIERIEELAEQARRNLETLGYEN-------VTVRHGDGSK--GWPEEAPYDRIIVTA 146 (209)
T ss_pred -----CEEEEEEECHHHHHHHHHHHHHCCCCC-------EEEEECCCCC--CCCCCCCCCEEEEEE
T ss_conf -----849999971999999999999769873-------4999788556--887779847899950
No 148
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=59.93 E-value=12 Score=17.09 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=69.1
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754--5799
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSKD 285 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~d 285 (674)
-+.|-.||.|.+|+..+ ..++ ...+-|.|+.....+-|...+.-.++.. -.|..||. +.+.
T Consensus 57 ~~lEIGfG~G~~l~~~A----~~~P------~~~fIGiE~~~~gv~~~~~~~~~~~l~N-------i~i~~~da~~~l~~ 119 (229)
T PRK00121 57 IHLEIGFGRGEFLVEMA----KANP------DINFIGIEIHEPGVAKALKKIEEAGLKN-------LRLLCGDAVEVLEH 119 (229)
T ss_pred EEEEECCCCCHHHHHHH----HHCC------CCCEEEEEEEHHHHHHHHHHHHHCCCCC-------EEEEECCHHHHHHH
T ss_conf 39996158969999999----8688------8868999961699999999999829983-------89883478999997
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674)
.+++..+|-|.-|-|= +|-+.+ .++. |.- +-.||..+..+|++ ||.+-+......+
T Consensus 120 ~~~~~s~~~i~i~FPD--PWpKkr-----H~KR----Rli---------~~~fl~~~~~~Lk~----~G~i~~~TD~~~Y 175 (229)
T PRK00121 120 FLPDGSLDRIYLNFPD--PWPKKR-----HHKR----RLV---------QPEFLELYARVLKP----GGEFHFATDWEEY 175 (229)
T ss_pred HCCCCCCCEEEECCCC--CCCCCC-----CCCC----CCC---------CHHHHHHHHHHCCC----CCEEEEEECCHHH
T ss_conf 1464541404671799--997632-----0240----128---------99999999985799----9889998187999
No 149
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=58.49 E-value=13 Score=16.93 Aligned_cols=157 Identities=11% Similarity=0.156 Sum_probs=83.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
++---+.++.+|+.-|+-. .+| .+|+.--+++|= +. .-..+.+. ....+...|.+++.+++
T Consensus 24 ~~m~i~~~~g~~L~~l~~~-------~~a---k~iLEiGT~~Gy--Sa-l~lA~~l~------~~g~i~tiE~~~~~~~~ 84 (204)
T pfam01596 24 SQMQISPEEGQFLSMLVKL-------VGA---KRTLEIGVFTGY--SL-LATALALP------EDGKITACDIDREAYEI 84 (204)
T ss_pred CCCCCCHHHHHHHHHHHHH-------HCC---CEEEEEECCCCH--HH-HHHHHHCC------CCCEEEEEEECHHHHHH
T ss_conf 7661499999999999997-------598---789998343259--99-99998489------99689999804899999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 999989808875334566668234754579-----998664189998168567653100011123442266665357777
Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSK-----DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~-----d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
|+-+.--.|.... -.+..||.+.. +..+..+||+|.-.- +|. .+
T Consensus 85 A~~~~~~ag~~~~------I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDa-----dK~-------~Y------------- 133 (204)
T pfam01596 85 GLPFIQKAGVADK------IEFRVGDALKTLEQLVEDKPLGEFDFAFVDA-----DKS-------SY------------- 133 (204)
T ss_pred HHHHHHHCCCCCE------EEEEEECHHHHHHHHHHCCCCCCCCEEEEEC-----CHH-------HH-------------
T ss_conf 9999997798744------7999874999999998447777643899818-----887-------77-------------
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCH------HHHH---HHHHHCCCEEEEEECCC
Q ss_conf 477065999999999614665788079997389713477644326------8999---99988494688831767
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGE------SEIR---RWLLENDLIEAIVALPT 395 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGE------s~IR---k~lie~d~ieaII~LP~ 395 (674)
..|+.+.+..|++ || .||..+ +||.|.-..-. ..|| +++.++.-+++++ ||-
T Consensus 134 ------~~y~e~~~~lL~~----gG--iii~DN-vL~~G~V~~~~~~~~~~~~ir~fn~~i~~d~r~~~~l-lPi 194 (204)
T pfam01596 134 ------PNYYERLLELVKV----GG--LIAIDN-TLWFGKVAEPDDEVPETVRVRELNKLLASDERVEISL-LPV 194 (204)
T ss_pred ------HHHHHHHHHHHCC----CE--EEEEEC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE-EEE
T ss_conf ------9999999986369----80--999944-5346856786668778899999999985399969999-862
No 150
>pfam00145 DNA_methylase C-5 cytosine-specific DNA methylase.
Probab=58.24 E-value=13 Score=16.90 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=39.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754579998
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLF 287 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~ 287 (674)
+|.|-.||-|||=. +.+. ++. -.+++.|+++..-+.-+.|- + +...||--.-+.-
T Consensus 2 ~vidlF~G~GG~s~-G~~~-------aG~---~~~~a~e~d~~a~~ty~~N~---~-----------~~~~~Di~~~~~~ 56 (319)
T pfam00145 2 KFIDLFAGIGGFRL-GLEQ-------AGF---ECVAANEIDKSAAKTYEANF---P-----------KVPIGDITLIDIK 56 (319)
T ss_pred CEEEECCCCCHHHH-HHHH-------CCC---EEEEEEECCHHHHHHHHHHC---C-----------CCCCCCCCCCCHH
T ss_conf 58997807078999-9998-------799---29999838999999999877---9-----------9961775408874
Q ss_pred CCCEEEEEEECCCC
Q ss_conf 66418999816856
Q gi|254780836|r 288 TGKRFHYCLSNPPF 301 (674)
Q Consensus 288 ~~~kFD~vlaNPPF 301 (674)
.-..+|++++-||-
T Consensus 57 ~~~~~Dvl~ggpPC 70 (319)
T pfam00145 57 DIPDIDILTGGFPC 70 (319)
T ss_pred HCCCCCEEEECCCC
T ss_conf 78886889868999
No 151
>TIGR00653 GlnA glutamine synthetase, type I; InterPro: IPR004809 Glutamine synthetase type I (or glutamate-ammonia ligase) has a dodecameric form, which can be subdivided into 1-alpha and 1-beta forms. The phylogeny of the 1-alpha and 1-beta forms appears polyphyletic. Escherichia coli, Synechocystis sp. (strain PCC 6803) , Aquifex aeolicus, and the crenarcheon Sulfolobus acidocaldarius have form 1-beta, while Bacillus subtilis, Thermotoga maritima, and various euryarchaea has form 1-alpha. The 1-beta dodecamer from the crenarcheon S. acidocaldarius differs from that in E. coli in that it is not regulated by adenylation. ; GO: 0004356 glutamate-ammonia ligase activity, 0009399 nitrogen fixation, 0005737 cytoplasm.
Probab=57.83 E-value=10 Score=17.58 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCCCCCC--CCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH------HHHHHCCC---
Q ss_conf 7677655--788616999994688743488389972367765764046644206989999999------99972102---
Q gi|254780836|r 393 LPTDLFF--RTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL------DIYVSREN--- 461 (674)
Q Consensus 393 LP~~lFy--nTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv------~~y~~f~e--- 461 (674)
||-=||= +.|.=|.+-+- |++---|.=+|-|=...| .-||+...-=|- ++..+|.+
T Consensus 265 MPKPlfGdNGSGMH~H~SLW---K~ePf~GenlF~g~~~~y----------~GLSe~ALyyIGGiLkHA~AL~A~tNPTv 331 (486)
T TIGR00653 265 MPKPLFGDNGSGMHCHQSLW---KGEPFDGENLFAGEEGEY----------AGLSETALYYIGGILKHAKALAAFTNPTV 331 (486)
T ss_pred CCCCCCCCCCCCCEEEEEEE---ECCCCCCCEECCCCCCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 58788772668554835563---277888840006858876----------54358888875208777788889765660
Q ss_pred CCCEEEEE
Q ss_conf 54104744
Q gi|254780836|r 462 GKFSRMLD 469 (674)
Q Consensus 462 ~e~ski~~ 469 (674)
|-|=|.+.
T Consensus 332 NSYKRLVP 339 (486)
T TIGR00653 332 NSYKRLVP 339 (486)
T ss_pred CCCCCCCC
T ss_conf 55223688
No 152
>KOG1544 consensus
Probab=57.78 E-value=9.8 Score=17.73 Aligned_cols=46 Identities=28% Similarity=0.419 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCEEEEEEECCCCCC
Q ss_conf 4326899999988494688831767765-5788616999994688743
Q gi|254780836|r 371 GSGESEIRRWLLENDLIEAIVALPTDLF-FRTNIATYLWILSNRKTEE 417 (674)
Q Consensus 371 gsGEs~IRk~lie~d~ieaII~LP~~lF-ynTgI~t~Iwil~k~K~~~ 417 (674)
.|.|.+|-+.|++|+-|-|+...-++.| |-|||-...= +++.|+++
T Consensus 350 SSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~-~~~~~~e~ 396 (470)
T KOG1544 350 SSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTP-VSLGRPER 396 (470)
T ss_pred CCCHHHHHHHHHHCCCCCEEEEEHHHHHHHCCCEEECCC-CCCCCCHH
T ss_conf 666799999998679811033302335422365133251-22466433
No 153
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=56.85 E-value=1.1 Score=24.04 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEC-CCCCHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504-66667889
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHG-QELEPETH 252 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyG-QEin~~ty 252 (674)
-||++.-++-..+++..| ..-....+|||..|.|||+ |+ +-+.. ..+| |+-|+.-|
T Consensus 14 ~ge~~v~~~p~~i~ttgL----------GSCV~v~l~D~~~~vgGm~-----H~--mLP~s------~~~~~~~~~~~kY 70 (164)
T COG1871 14 IGEYKVTKDPDVIITTGL----------GSCVGVCLRDPVNGVGGMN-----HF--MLPDS------ALSGSPLSNPAKY 70 (164)
T ss_pred EEEEEEECCCCEEEEECC----------CCEEEEEEECCCCCCCCEE-----EE--ECCCC------CCCCCCCCCHHHH
T ss_conf 113787369978999625----------6669999985635745556-----79--62678------8888767762567
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999898088
Q gi|254780836|r 253 AVCVAGMLIRRL 264 (674)
Q Consensus 253 aIak~nMli~g~ 264 (674)
+...|.+||..+
T Consensus 71 ~d~ame~Lin~l 82 (164)
T COG1871 71 GDTAMELLINEL 82 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 888999999999
No 154
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=56.51 E-value=12 Score=17.08 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=69.3
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.++.|-+||.|||= .+.+. ++ .-.++..|+++..-+.-+.|.-- .-+..+|.-.-+.
T Consensus 4 ~~~idLFsG~GG~~-lGf~~-------ag---f~~~~a~Eid~~a~~ty~~n~~~------------~~~~~~di~~~~~ 60 (328)
T COG0270 4 MKVIDLFAGIGGLS-LGFEE-------AG---FEIVFANEIDPPAVATYKANFPH------------GDIILGDIKELDG 60 (328)
T ss_pred CEEEEECCCCCHHH-HHHHH-------CC---CEEEEEEECCHHHHHHHHHHCCC------------CCCHHHHHHHHCH
T ss_conf 54998658756588-99986-------49---84899874698899999985888------------7420303766052
Q ss_pred --CCCCEEEEEEECCCC---CCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCCCCEEEEEC
Q ss_conf --866418999816856---7653100011123442266665357777477065999-9999996146657880799973
Q gi|254780836|r 287 --FTGKRFHYCLSNPPF---GKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLF-LMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 287 --~~~~kFD~vlaNPPF---g~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lF-lqh~i~klk~~~~~ggr~aIV~ 360 (674)
+....+|++++-||= ++-.+. +...+. .|+|.| ...+|..++| +..|+-
T Consensus 61 ~~~~~~~~DvligGpPCQ~FS~aG~r---------~~~~D~----------R~~L~~~~~r~I~~~~P------~~fv~E 115 (328)
T COG0270 61 EALRKSDVDVLIGGPPCQDFSIAGKR---------RGYDDP----------RGSLFLEFIRLIEQLRP------KFFVLE 115 (328)
T ss_pred HHCCCCCCCEEEECCCCCCHHHHCCC---------CCCCCC----------HHHHHHHHHHHHHHHCC------CEEEEE
T ss_conf 22355676379858997213340776---------677673----------34769999999996389------879996
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 897134776443268999999884946
Q gi|254780836|r 361 SSSPLFNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 361 ngs~LF~G~agsGEs~IRk~lie~d~i 387 (674)
|---|-+. -|.....|.+.|-+.++-
T Consensus 116 NV~gl~~~-~~~~~~~i~~~L~~~GY~ 141 (328)
T COG0270 116 NVKGLLSS-KGQTFDEIKKELEELGYG 141 (328)
T ss_pred CCHHHHHC-CHHHHHHHHHHHHHCCCC
T ss_conf 64666654-416999999999875885
No 155
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit; InterPro: IPR010205 This entry represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria.; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0051537 2 iron 2 sulfur cluster binding, 0006814 sodium ion transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=55.80 E-value=14 Score=16.69 Aligned_cols=19 Identities=5% Similarity=0.267 Sum_probs=10.3
Q ss_pred CCHHHHHHHHHHHHCCCCC
Q ss_conf 7718999998654207789
Q gi|254780836|r 552 ASKSFIVAFINAFGRKDPR 570 (674)
Q Consensus 552 ~~~~~~~~~~~~~~~~d~~ 570 (674)
+.++-...++.-+|+.++.
T Consensus 399 ~mn~av~kmL~~lGVe~~~ 417 (425)
T TIGR01941 399 LMNAAVIKMLEDLGVEREN 417 (425)
T ss_pred HHHHHHHHHHHHCCCCCHH
T ss_conf 2379999998853897001
No 156
>pfam05869 Dam DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.
Probab=53.85 E-value=5.8 Score=19.21 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCC
Q ss_conf 75368179999999973178401101387764031176654
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCG 215 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCG 215 (674)
-+..||.++..-+.+.. |. -.+|+||-
T Consensus 12 D~W~TP~~lf~~l~~~f------------g~--f~LD~cA~ 38 (179)
T pfam05869 12 DQWQTPDELFWGLNAEF------------GP--FDLDAAAD 38 (179)
T ss_pred CCCCCCHHHHHHHHHHH------------CC--CCEECCCC
T ss_conf 76779699999999883------------88--32632779
No 157
>PRK09224 threonine dehydratase; Reviewed
Probab=53.67 E-value=12 Score=17.23 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHH----HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHH
Q ss_conf 4389999999998622766575368---179999----999973178401101387764031176654046899999999
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEGAEDFMT---PRDVVH----LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHV 227 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~aGeffT---PR~Vi~----Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i 227 (674)
+..++++- ++++++.| .-|-- -.+||- +..+|+ .+.|+....|+=| +|.||+++-..-++
T Consensus 124 ~dea~~~A-~~la~e~g---~~fIhPfDdp~VIaGQGTiglEIl--------eQ~~~~~D~V~vp-VGGGGLiaGia~~~ 190 (504)
T PRK09224 124 FDEAYAHA-IELAEEEG---LTFIHPFDDPDVIAGQGTIAMEIL--------QQHPHPLDAIFVP-VGGGGLIAGVAAYI 190 (504)
T ss_pred HHHHHHHH-HHHHHHCC---CEEECCCCCHHHHHCCCHHHHHHH--------HHCCCCCCEEEEE-CCCCHHHHHHHHHH
T ss_conf 89999999-99998649---785067788868626755999999--------8576888889995-58437889999999
Q ss_pred HHHHHHCCCCCCEEEECCCCCH
Q ss_conf 9853100533322550466667
Q gi|254780836|r 228 ADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 228 ~~~~~~~~~~~~~~lyGQEin~ 249 (674)
+..+++. .++|.|-..
T Consensus 191 K~~~P~i------kVIGVEpe~ 206 (504)
T PRK09224 191 KQLRPEI------KVIGVEPED 206 (504)
T ss_pred HHHCCCC------EEEEEEECC
T ss_conf 8639987------389999568
No 158
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=53.35 E-value=9.3 Score=17.88 Aligned_cols=10 Identities=20% Similarity=0.790 Sum_probs=8.1
Q ss_pred EEEEECCCCC
Q ss_conf 9998168567
Q gi|254780836|r 293 HYCLSNPPFG 302 (674)
Q Consensus 293 D~vlaNPPFg 302 (674)
|+|-..|||-
T Consensus 176 dfvY~DPPY~ 185 (274)
T COG0338 176 DFVYCDPPYL 185 (274)
T ss_pred CEEEECCCCC
T ss_conf 1899589987
No 159
>pfam12128 DUF3584 Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP.
Probab=52.86 E-value=16 Score=16.34 Aligned_cols=11 Identities=9% Similarity=0.437 Sum_probs=6.8
Q ss_pred CCHHHCCCEEE
Q ss_conf 88343087230
Q gi|254780836|r 26 FKHTDFGKVIL 36 (674)
Q Consensus 26 ~~~~eY~~~IL 36 (674)
....+|+++|.
T Consensus 140 i~~~eYR~IIq 150 (1192)
T pfam12128 140 LNTDEYRAIIQ 150 (1192)
T ss_pred CCHHHHHHHHC
T ss_conf 78899999980
No 160
>TIGR00742 yjbN TIM-barrel protein, yjbN family; InterPro: IPR004653 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) although NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA . They show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=50.97 E-value=14 Score=16.83 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=8.4
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 733376114438999999
Q gi|254780836|r 146 HPDTVPDRVMSNIYEHLI 163 (674)
Q Consensus 146 ~p~~v~n~~mG~iyE~LI 163 (674)
+-+..+.+--.+-||.|.
T Consensus 134 GId~~ssdykndSYe~l~ 151 (326)
T TIGR00742 134 GIDELSSDYKNDSYEELC 151 (326)
T ss_pred CCCCCCCCCCCCCHHHHH
T ss_conf 756443322323378999
No 161
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=50.87 E-value=17 Score=16.14 Aligned_cols=115 Identities=22% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCC--CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHH
Q ss_conf 65753681799999999731784011013--8776403117665404689999999998531005333225504666678
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKE--SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPE 250 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~--~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ 250 (674)
..|+|+|-.+|..+--++|..-.-..+.+ .|. ..+++.--.|+|-|...-..++.++.+..-. ..+++=.|.+++
T Consensus 44 ~~GDFiTApels~lFGella~~~~~~wq~~g~p~-~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~--~~~~~iiE~s~~ 120 (370)
T COG1565 44 RKGDFITAPELSQLFGELLAEQFLQLWQELGRPA-PLKLVEIGAGRGTLASDILRTLRRLYPELYE--ALSYYIIEPSPE 120 (370)
T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCHHHHH--HCEEEEEECCHH
T ss_conf 4587452442688999999999999999836899-8448996799676999999999875978773--055999925989
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 8999999989808875334566668234754579998664189998168567
Q gi|254780836|r 251 THAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFG 302 (674)
Q Consensus 251 tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg 302 (674)
--+.-|..+ .+.. + -+.+- +.- +.+++.-.-+|++|==|-
T Consensus 121 L~~~Qk~~L--~~~~-~-------~~~~~-~~~-e~~p~~~~~i~~~NElfD 160 (370)
T COG1565 121 LRARQKETL--KATE-D-------LIRWV-EWV-EDLPKKFPGIVVSNELFD 160 (370)
T ss_pred HHHHHHHHH--HCCC-C-------CHHHH-HHH-HHCCCCCCEEEEECHHHC
T ss_conf 999999987--4332-1-------11667-668-754466756998510002
No 162
>COG4982 3-oxoacyl-[acyl-carrier protein]
Probab=50.23 E-value=18 Score=16.07 Aligned_cols=58 Identities=29% Similarity=0.564 Sum_probs=37.4
Q ss_pred HHH-HHHHHHHH---CCCCCCCCEEEEECCCCC---CCCCCCCCCHHH------HHHHHHHCCC------EEEEEEC
Q ss_conf 999-99999961---466578807999738971---347764432689------9999988494------6888317
Q gi|254780836|r 336 MLF-LMHLANKL---ELPPNGGGRAAIVLSSSP---LFNGRAGSGESE------IRRWLLENDL------IEAIVAL 393 (674)
Q Consensus 336 ~lF-lqh~i~kl---k~~~~~ggr~aIV~ngs~---LF~G~agsGEs~------IRk~lie~d~------ieaII~L 393 (674)
||| +|.+|.-| +....-++|+-||+|||| .|-||-.=||++ .-||--|..| ..|+|+-
T Consensus 523 lLw~V~Rliggl~~~~s~r~v~~R~hVVLPgSPNrG~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGW 599 (866)
T COG4982 523 LLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGSPNRGMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGW 599 (866)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEE
T ss_conf 99999999987654122257665248981489887763787512467888999998750410156777775430122
No 163
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=49.49 E-value=7.2 Score=18.61 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=11.7
Q ss_pred CEEEEEEECCCCC
Q ss_conf 4189998168567
Q gi|254780836|r 290 KRFHYCLSNPPFG 302 (674)
Q Consensus 290 ~kFD~vlaNPPFg 302 (674)
.+||+||+.|||=
T Consensus 84 ~~fD~vi~DPPFL 96 (161)
T pfam10237 84 GKFDRVIADPPFL 96 (161)
T ss_pred CCCCEEEECCCCC
T ss_conf 8678899899998
No 164
>pfam03971 IDH Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.
Probab=48.91 E-value=17 Score=16.16 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=36.8
Q ss_pred CCCEEEEEC-CCCCCCCCCCCCCH---------HHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 880799973-89713477644326---------89999998849468883176776557886169999946887434883
Q gi|254780836|r 352 GGGRAAIVL-SSSPLFNGRAGSGE---------SEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGK 421 (674)
Q Consensus 352 ~ggr~aIV~-ngs~LF~G~agsGE---------s~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgk 421 (674)
..|.+-||- +|.+|+.-.-..|. .-||-|+ .|.-+-=--||-|+..|. +.++.. +
T Consensus 427 ~~G~v~vvd~~g~vl~~h~Ve~GDIwR~cq~kd~pI~dWv----------kLav~Rar~t~~pavFWL-D~~RaH----D 491 (735)
T pfam03971 427 ADGVVRVVDAAGEVLLEHSVEAGDIWRMCQTKDAPIRDWV----------KLAVTRARLSNTPAVFWL-DPARAH----D 491 (735)
T ss_pred CCCEEEEEECCCCEEEECCCCCCCEEHHCCCCCCHHHHHH----------HHHHHHHHHHCCCEEEEC-CCCCCC----H
T ss_conf 9937999979998999711058885112114671799999----------999999897499768952-888862----6
Q ss_pred EEEEECHHHHHHHHH-CCCCCCCCCHHHHH
Q ss_conf 899723677657640-46644206989999
Q gi|254780836|r 422 VQLINATDLWTSIRN-EGKKRRIINDDQRR 450 (674)
Q Consensus 422 V~lIDAs~~~~~~rk-~G~Kr~~l~~~~i~ 450 (674)
.++|--.+.|-+--. .|-.-+.+++..--
T Consensus 492 ~~li~kV~~yL~~hdt~gldi~I~~p~~A~ 521 (735)
T pfam03971 492 VELIKKVKRYLKDHDTNGLDIRIMSPVEAM 521 (735)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECHHHHH
T ss_conf 999999999987548988851740899999
No 165
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=48.77 E-value=19 Score=15.93 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=27.5
Q ss_pred CCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 64189998168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r 289 GKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674)
Q Consensus 289 ~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674)
..+||+.++.||.-++ |=-|||-..|+-||..+-+ |-.+|-...|++
T Consensus 219 ~~kFDvfiTDPpeTi~-----------------------------alk~FlgRGI~tLkg~~~a-GyfgiT~ressi 265 (354)
T COG1568 219 KRKFDVFITDPPETIK-----------------------------ALKLFLGRGIATLKGEGCA-GYFGITRRESSI 265 (354)
T ss_pred HHHCCEEECCCHHHHH-----------------------------HHHHHHHCCHHHHCCCCCC-CEEEEEECCCCH
T ss_conf 8507764359633579-----------------------------9999985118873588745-368664142628
No 166
>COG1002 Type II restriction enzyme, methylase subunits [Defense mechanisms]
Probab=47.54 E-value=7.2 Score=18.61 Aligned_cols=25 Identities=40% Similarity=0.907 Sum_probs=19.8
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 4031176654046899999999985
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADC 230 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~ 230 (674)
...+.+|+||+|.++..+.+.+...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (786)
T COG1002 245 IKIFLDPACGSGNFLKVALEQLEDL 269 (786)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5552145554344013589999987
No 167
>PRK10717 cysteine synthase A; Provisional
Probab=47.43 E-value=14 Score=16.69 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 176654046899999999985310053332255046666
Q gi|254780836|r 210 YDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 210 yDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
+=.++||||+++-...++++++++. .++|.|-.
T Consensus 180 ~V~~vGtGG~i~Gi~~~lk~~~p~~------~vi~vep~ 212 (334)
T PRK10717 180 FVCAVGTGGTLAGVSRYLKETNPKI------RIVLADPT 212 (334)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCC------EEEEEECC
T ss_conf 7631158623899999999759998------89998017
No 168
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=47.37 E-value=20 Score=15.79 Aligned_cols=57 Identities=25% Similarity=0.385 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCHHHHH--------HHHHHHH
Q ss_conf 8999987402456733376114438-----------999999999862276657536817999--------9999973
Q gi|254780836|r 133 LYKICKNFSGIELHPDTVPDRVMSN-----------IYEHLIRRFGSEVSEGAEDFMTPRDVV--------HLATALL 191 (674)
Q Consensus 133 L~~vI~~F~~idL~p~~v~n~~mG~-----------iyE~LIrkFae~~~~~aGeffTPR~Vi--------~Lmv~ll 191 (674)
-+.+++.++++||.|..++--.|-. +-+++..+.++.-+.... ..||+|| |||+++|
T Consensus 73 t~pil~~l~~l~L~p~~iDiG~La~~~~~~~~~~~~~~~fv~~~l~~~~~~~~~--~~p~DVVLYGFGRIGRLlAR~L 148 (479)
T PRK08289 73 TFPILEALSKLDLGPARVDIGKLAVKYKAEHGDGSDIEAFVREELADVIGSADD--EAPRDVVLYGFGRIGRLLARLL 148 (479)
T ss_pred HHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCEEEECCCHHHHHHHHHH
T ss_conf 999999998589987566699999999862478788999999999886478988--9987579976737999999999
No 169
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=46.75 E-value=20 Score=15.73 Aligned_cols=127 Identities=24% Similarity=0.326 Sum_probs=71.2
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHH-CCCCCCCCCCCCC--CCCCCCC--
Q ss_conf 3117665404689999999998531005333225504666678899999998980-8875334566668--2347545--
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIR-RLESDPRRDLSKN--IQQGSTL-- 282 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~-g~~~d~~~~~~~N--I~~GdTL-- 282 (674)
-+.|-.||.|++|+..+. .++ ...+.|.|+-....+-+...+.-+ ++ .| +..||..
T Consensus 23 i~lEIG~G~G~~l~~~A~----~~p------~~n~iGiEi~~~~v~~~~~k~~~~~~l---------~Ni~~~~~da~~~ 83 (199)
T pfam02390 23 LFLEIGCGMGDFLVAMAK----KNP------DKLFIGIEIRVPGVDKALKKIIALRGL---------QNLRILCGDAMKL 83 (199)
T ss_pred EEEEECCCCCHHHHHHHH----HCC------CCCEEEEEECHHHHHHHHHHHHHHCCC---------CCEEEECCCHHHH
T ss_conf 499973688899999999----789------987899995059999999999984577---------7378760479999
Q ss_pred CCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 79998664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r 283 SKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 283 ~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
-...++...+|-|.-|-|= +|-+.+ .++. |.- +.-|++-+...|++ ||.+-+....
T Consensus 84 l~~~~~~~~l~~i~i~FPD--PWpKkr-----H~KR----Rli---------~~~fl~~~~~~Lk~----gG~l~~~TD~ 139 (199)
T pfam02390 84 LPNLFPDGSLQKIFINFPD--PWPKKR-----HHKR----RLL---------QPEFLKEYARVLKP----GGVLHLATDV 139 (199)
T ss_pred HHHHCCCCCEEEEEEECCC--CCCCCC-----CCCC----CCC---------CHHHHHHHHHHCCC----CCEEEEEECC
T ss_conf 9975798864279996799--987644-----2440----007---------99999999996388----9899998289
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 71347764432689999998849
Q gi|254780836|r 363 SPLFNGRAGSGESEIRRWLLEND 385 (674)
Q Consensus 363 s~LF~G~agsGEs~IRk~lie~d 385 (674)
..+| ..+...+-++.
T Consensus 140 ~~y~--------~~~~e~~~~~~ 154 (199)
T pfam02390 140 EEYF--------EWMLEHLSENH 154 (199)
T ss_pred HHHH--------HHHHHHHHHCC
T ss_conf 9999--------99999999656
No 170
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=46.74 E-value=20 Score=15.72 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHH
Q ss_conf 36817999999997317840110138776403117665404689999999998531005333225504666678899999
Q gi|254780836|r 177 FMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCV 256 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak 256 (674)
--+-..++-.|.+++ ...+..+|.+--||||= .+|. +.++.+. ...+|..|+.++-...|+
T Consensus 57 TISqP~iVA~MlElL----------~l~pg~rVLEIGTGSGY--qAAl--LA~Lvg~-----~G~V~TIE~~~~L~~~Ar 117 (317)
T PRK13943 57 TSSQPSLMALFMEWV----------GLDKGMRVLEIGGGTGY--NAAV--MSRVVGE-----KGLVVSVEYSRKICEIAK 117 (317)
T ss_pred EECHHHHHHHHHHHH----------CCCCCCEEEEECCCCCH--HHHH--HHHHHCC-----CCEEEEEEECHHHHHHHH
T ss_conf 741689999999971----------78999868996577438--9999--9998487-----875999986799999999
Q ss_pred HHHHHHCCC
Q ss_conf 998980887
Q gi|254780836|r 257 AGMLIRRLE 265 (674)
Q Consensus 257 ~nMli~g~~ 265 (674)
.++--.|.+
T Consensus 118 ~~L~~lG~~ 126 (317)
T PRK13943 118 RNVERLGIE 126 (317)
T ss_pred HHHHHCCCC
T ss_conf 999977998
No 171
>KOG1670 consensus
Probab=46.19 E-value=9.5 Score=17.84 Aligned_cols=121 Identities=22% Similarity=0.169 Sum_probs=70.5
Q ss_pred EEEEEECCCCCCCCCCCHHHHHH-----HHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEECCCC
Q ss_conf 89998168567653100011123-----4422666-65357777477065999999999614665--7880799973897
Q gi|254780836|r 292 FHYCLSNPPFGKKWEKDKDAVEK-----EHKNGEL-GRFGPGLPKISDGSMLFLMHLANKLELPP--NGGGRAAIVLSSS 363 (674)
Q Consensus 292 FD~vlaNPPFg~~Wk~~~~~v~~-----e~~~~~~-~Rf~~glP~~sdg~~lFlqh~i~klk~~~--~~ggr~aIV~ngs 363 (674)
--+=.-||+=..+|+...+.|.. |.-.-+. -.-..+|++.+|-. +| -+.|.-|-.+. ..|||-.+++++|
T Consensus 41 WTlW~l~~d~~ksW~d~Lk~v~tF~TVeeFW~Ly~~I~~ps~L~~~sDy~-lF-k~gI~PmWED~~N~~GGrW~~~~~k~ 118 (212)
T KOG1670 41 WTLWFLKNDRNKSWEDMLKEVTTFDTVEEFWSLYNNIKPPSGLNRGSDYS-LF-KKGIRPMWEDPANKNGGRWLITVPKS 118 (212)
T ss_pred EEEEEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHCCCCCCHH-HH-HCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 45786538755557887542202353999999985268811078665377-77-52788044573336787479984676
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHH
Q ss_conf 1347764432689999998849468883176776557886169999946887434883899723677
Q gi|254780836|r 364 PLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDL 430 (674)
Q Consensus 364 ~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~ 430 (674)
|+-.|+.-||+...+|=.+-|- ++=..|=.|+|-++...|- -|..=||++.
T Consensus 119 --------------~k~~lD~~WL~tLlalIGE~fd-~~deICGaV~NiR~k~~KI-SvWT~~~~ne 169 (212)
T KOG1670 119 --------------GKAELDELWLETLLALIGEQFD-HSDEICGAVVNIRGKGDKI-SVWTKNAGNE 169 (212)
T ss_pred --------------CHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCCCEE-EEEECCCCCH
T ss_conf --------------3445778899999999740003-4444104899840577568-8985577754
No 172
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=45.84 E-value=21 Score=15.64 Aligned_cols=61 Identities=21% Similarity=0.305 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 68999999884946888317677655788616999994688743488389972367765764046644206989999999
Q gi|254780836|r 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQIL 453 (674)
Q Consensus 374 Es~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv 453 (674)
|.-||||+|+|..=-.||.+|+-.|+- ..+|. +| ++ +-+.++.|++++.++|.
T Consensus 437 e~LI~ky~l~N~h~~~v~~~Ps~~~~~----------~~eke-e~-------------e~---L~~~~~~l~de~~~ki~ 489 (978)
T COG1026 437 EKLIRKYFLDNPHYVTVIVLPSPELEE----------KLEKE-ER-------------EL---LQKRSSELTDEDLEKII 489 (978)
T ss_pred HHHHHHHHHCCCCCEEEEEECCHHHHH----------HHHHH-HH-------------HH---HHHHHHHCCHHHHHHHH
T ss_conf 999999960289617999906757888----------87799-99-------------99---99998623878999999
Q ss_pred HHHHHCCC
Q ss_conf 99972102
Q gi|254780836|r 454 DIYVSREN 461 (674)
Q Consensus 454 ~~y~~f~e 461 (674)
+-....++
T Consensus 490 ~~~~~lke 497 (978)
T COG1026 490 KDSKKLKE 497 (978)
T ss_pred HHHHHHHH
T ss_conf 99999988
No 173
>KOG1478 consensus
Probab=44.72 E-value=21 Score=15.61 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 33761144389999999998622766575368179999999
Q gi|254780836|r 148 DTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLAT 188 (674)
Q Consensus 148 ~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv 188 (674)
..++++.||.|||-= --|-||--|++.-|.+
T Consensus 133 G~is~D~lg~iFetn----------VFGhfyli~~l~pll~ 163 (341)
T KOG1478 133 GKISADGLGEIFETN----------VFGHFYLIRELEPLLC 163 (341)
T ss_pred CEECCCCHHHHHHHC----------CCCHHHHHHHHHHHHH
T ss_conf 513355366675204----------4411024865536764
No 174
>pfam01726 LexA_DNA_bind LexA DNA binding domain. This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins. The aligned region contains a variant form of the helix-turn-helix DNA binding motif. This domain is found associated with pfam00717 the auto-proteolytic domain of LexA EC:3.4.21.88.
Probab=43.91 E-value=16 Score=16.28 Aligned_cols=30 Identities=10% Similarity=0.256 Sum_probs=21.7
Q ss_pred HHHHHHHHHHH--HHHCHHHHHHHHHCCHHHH
Q ss_conf 55899999999--7529998999871772357
Q gi|254780836|r 94 TNTRNNLESYI--ASFSDNAKAIFEDFDFSST 123 (674)
Q Consensus 94 ~~~~~nl~~yi--~gfS~nv~dI~~~f~f~~~ 123 (674)
..+-+-+.+|+ +|++|.++||-+.|.|...
T Consensus 9 ~~il~~I~~~~~~~G~~Pt~rEI~~~~g~~S~ 40 (65)
T pfam01726 9 REVLDFIKASIEETGYPPSRREIAQALGLRSP 40 (65)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCH
T ss_conf 99999999999982889879999999389980
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=42.77 E-value=23 Score=15.33 Aligned_cols=114 Identities=20% Similarity=0.240 Sum_probs=65.9
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCC
Q ss_conf 31176654046899999999985310053332255046666788999999989808875334566668234754--5799
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST--LSKD 285 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT--L~~d 285 (674)
.+.+-.||.|.||+..+ ..+++ ..+-|.|+-....+-|..-+.-.|++ + -+|..+|. +.+.
T Consensus 51 i~lEIGfG~G~~l~~~A----~~nP~------~nfiGiEi~~~~v~~~l~k~~~~~l~-N------lri~~~DA~~~l~~ 113 (227)
T COG0220 51 IVLEIGFGMGEFLVEMA----KKNPE------KNFLGIEIRVPGVAKALKKIKELGLK-N------LRLLCGDAVEVLDY 113 (227)
T ss_pred EEEEECCCCCHHHHHHH----HHCCC------CCEEEEEEEHHHHHHHHHHHHHCCCC-C------EEEEECCHHHHHHH
T ss_conf 69996888987899999----87898------77899997348999999999982998-4------69980779999973
Q ss_pred CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 98664189998168567653100011123442266665357777477065999999999614665788079997389
Q gi|254780836|r 286 LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSS 362 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ng 362 (674)
.+++...|-|.-|-| -+|-+. .|. ..|.- |--|++-...+|++ ||.+-.-...
T Consensus 114 ~~~~~sl~~I~i~FP--DPWpKk------RH~---KRRl~---------~~~fl~~~a~~Lk~----gG~l~~aTD~ 166 (227)
T COG0220 114 LIPDGSLDKIYINFP--DPWPKK------RHH---KRRLT---------QPEFLKLYARKLKP----GGVLHFATDN 166 (227)
T ss_pred CCCCCCEEEEEEECC--CCCCCC------CCC---CCCCC---------CHHHHHHHHHHCCC----CCEEEEEECC
T ss_conf 589885657999799--999876------643---32147---------88999999997268----9789997267
No 176
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=42.40 E-value=18 Score=15.97 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 4104744466305789972044212
Q gi|254780836|r 463 KFSRMLDYRTFGYRRIKVLRPLRMS 487 (674)
Q Consensus 463 e~ski~~~~~Fgy~~vtverplr~~ 487 (674)
+.+.||+-...|-.+|+||||.+.+
T Consensus 42 ~~~~Il~ik~l~~~rV~VEr~~K~~ 66 (69)
T smart00596 42 NGKEILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred CCCCEEEEHHHCCEEEEEECCCCCC
T ss_conf 8674577314177589985465568
No 177
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=42.28 E-value=23 Score=15.28 Aligned_cols=127 Identities=16% Similarity=0.086 Sum_probs=71.6
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.||.|--+|+|.-+..+.+...+ ...+...|-++..-++++ -++++.... .+......+....
T Consensus 36 ~slLD~GsGpGt~~wAa~~~w~~---------l~~~~~vd~s~~m~~l~~--~L~~~~~~~------~~~~~~~~~~~~~ 98 (275)
T pfam09243 36 LSHLDVGAGPGTALWAASELWPG---------LEPATVIDASEAALAIGE--ELARHIPAL------KHAWRARDVIGAA 98 (275)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC---------CEEEEEECCCHHHHHHHH--HHHHCCCCC------CCCEECCCCCCCC
T ss_conf 75777277579999999988424---------768999748999999999--998518434------5431114310112
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 86641899981685676531000111234422666653577774770659999999996146657880799973897134
Q gi|254780836|r 287 FTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLF 366 (674)
Q Consensus 287 ~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF 366 (674)
..-..+|.|++ +|... | +++ +.-...++++-+++. |-+.+|-||.|-
T Consensus 99 ~~~~~~DLVi~--sy~L~----------E------------l~~--~~R~~~v~~LW~~~~------g~LVlVEpGtp~- 145 (275)
T pfam09243 99 LDFEPADLVTI--SYVLD----------E------------LTP--ASREKVIDNLWAKAA------QALVIVEPGTPA- 145 (275)
T ss_pred CCCCCCCEEEE--ECHHC----------C------------CCH--HHHHHHHHHHHHHCC------CEEEEEECCCHH-
T ss_conf 45898788996--14220----------7------------997--899999999999539------979999189817-
Q ss_pred CCCCCCCHHHHHHHHHHCCC
Q ss_conf 77644326899999988494
Q gi|254780836|r 367 NGRAGSGESEIRRWLLENDL 386 (674)
Q Consensus 367 ~G~agsGEs~IRk~lie~d~ 386 (674)
|.. -=.+.|..||+.+.
T Consensus 146 -Gf~--~I~~aR~~ll~~g~ 162 (275)
T pfam09243 146 -GWR--RVLEARERLIAAGF 162 (275)
T ss_pred -HHH--HHHHHHHHHHHCCC
T ss_conf -999--99999999986899
No 178
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=42.01 E-value=22 Score=15.51 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHH
Q ss_conf 8179999999973178401101387764031176654046
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGG 218 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGG 218 (674)
|+.|++-+.-.+.-... .+. .+. ..+.| +|||||
T Consensus 51 t~~El~g~~~am~~~~~--~~~-~~~--~~~~D-~~GTGG 84 (339)
T PRK00188 51 TVDEIAGAARAMREHAT--PVP-VPP--GDAVD-IVGTGG 84 (339)
T ss_pred CHHHHHHHHHHHHHHCC--CCC-CCC--CCCEE-ECCCCC
T ss_conf 99999999999999589--789-998--88221-468999
No 179
>KOG1932 consensus
Probab=41.99 E-value=24 Score=15.26 Aligned_cols=164 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred EEEEECH----HH-H-HHHHHCCCCC-CCCCHHHHHHHHHHHHHCC-CCCCEEEEECCCCCE-EEEEEECCCCCC-CCC-
Q ss_conf 8997236----77-6-5764046644-2069899999999997210-254104744466305-789972044212-100-
Q gi|254780836|r 422 VQLINAT----DL-W-TSIRNEGKKR-RIINDDQRRQILDIYVSRE-NGKFSRMLDYRTFGY-RRIKVLRPLRMS-FIL- 490 (674)
Q Consensus 422 V~lIDAs----~~-~-~~~rk~G~Kr-~~l~~~~i~~Iv~~y~~f~-e~e~ski~~~~~Fgy-~~vtverplr~~-~~~- 490 (674)
++.||.+ ++ | .|-|+.++|+ --+++|.++ --|.+.. +..+-+|=---|+-+ ++|+|++|..+- +|+
T Consensus 576 ~lqi~~~~~k~dI~chsK~R~~kkKk~~l~sgEE~e---~dl~~~d~~spllWIRiDpd~e~i~~i~i~QPd~Mw~~QLr 652 (1180)
T KOG1932 576 TLQIDGDFTKLDIQCHSKSRRQKKKKVPLMSGEEIE---MDLTNMDEESPLLWIRIDPDMEWIREIHIEQPDFMWVYQLR 652 (1180)
T ss_pred EEEECCCCCCCCEEECCCCCCCCCCCCCCCCHHHHC---CCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCHHHHHHHHH
T ss_conf 588557620030152340013677678889835524---63224575686058996765553534100583189999987
Q ss_pred -CHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf -88899765532211002845488999999-9999865320014567776544323443587777189999986542077
Q gi|254780836|r 491 -DKTGLARLEADITWRKLSPLHQSFWLDIL-KPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKD 568 (674)
Q Consensus 491 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~d 568 (674)
+.+-++++++-..+.++.... ...++ +.+.+.-.-|.-+-...+...+-.... ........++..+..-++.++
T Consensus 653 ~drDVvAQ~EAI~~le~~p~~~---s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~~-~dwtG~~~Li~~F~~~fc~k~ 728 (1180)
T KOG1932 653 QDRDVVAQMEAIESLEALPSTA---SRSALTRTLEDERYFYRIRIAAAFALAKTANGE-SDWTGPPHLIQFFRKKFCSKD 728 (1180)
T ss_pred HCCCHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHCCCC
T ss_conf 6004999999999987078511---589999987523023688999999999862565-334374999999999862244
Q ss_pred CCCCEEECCCCCEEECCCCCCCEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8997655678867156542532007886998999997488878
Q gi|254780836|r 569 PRADPVTDVNGEWIPDTNLTEYENVPYLESIQDYFVREVSPHV 611 (674)
Q Consensus 569 ~~a~~~~d~kg~~~~D~~lrD~E~vpl~e~i~~yf~rEV~P~~ 611 (674)
-+ + | ...|+++ ++.||-+++.|++
T Consensus 729 st--I---------p--KsNnF~~------~q~Yfvq~~iP~a 752 (1180)
T KOG1932 729 ST--I---------P--KSNNFSN------FQEYFVQCAIPVA 752 (1180)
T ss_pred CC--C---------C--CCCCCCC------HHHHHHHHHHHHH
T ss_conf 78--7---------8--7676441------8999998763899
No 180
>pfam05442 Microvirus_A Microvirus A protein. Microvirus A protein is a specific endonuclease that cleaves the viral strand of supertwisted, closed circular DNA at a unique site in the A gene. The A protein also causes relaxation of supertwisted DNA and forms a complex with viral DNA that has a discontinuity in gene A of the viral strand. The C terminal region of the sequence contains the cleavage site for A/A* protein.
Probab=41.60 E-value=5.1 Score=19.59 Aligned_cols=29 Identities=31% Similarity=0.497 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 65464258666650179989899999999
Q gi|254780836|r 630 RVGYEINFNRFFYQYQPSRKLQDIDAELK 658 (674)
Q Consensus 630 kvGyEI~F~r~FY~y~~~r~l~ei~~~i~ 658 (674)
-|-||=|.|+|.|++..-||+..|.+|..
T Consensus 129 gv~yeK~v~k~w~klaa~rPlK~IR~dyn 157 (161)
T pfam05442 129 GVRYEKPLNKHWSKLAANRPEKDIRADLD 157 (161)
T ss_pred CCCCCCHHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 51126719999999987182778898744
No 181
>pfam11394 DUF2875 Protein of unknown function (DUF2875). This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=41.45 E-value=24 Score=15.20 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=68.8
Q ss_pred HHHHHHHCCCEEEEEECCCC-----CCCCCC-CCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 99999884946888317677-----655788-616999994688743488389972367765764046644206989999
Q gi|254780836|r 377 IRRWLLENDLIEAIVALPTD-----LFFRTN-IATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRR 450 (674)
Q Consensus 377 IRk~lie~d~ieaII~LP~~-----lFynTg-I~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~ 450 (674)
.+-.-|..+|.-|+=.||++ +||-|+ =+..+.-|++--....-.-+-+=|-.+-|.--|.+|+ .-+|..=++
T Consensus 323 ~qa~aL~agW~qA~~tLp~g~kP~RvFYDtt~~~~~~i~L~qALh~~~~~~~~l~d~~egYDigrRlGn--TGvSs~lVq 400 (451)
T pfam11394 323 LQAEALKAGWQQALDTLPEGEKPVRVFYDTTGDREWEIPLNQALHDLNGQGPELGDVKEGYDIGRRIGN--TGVSSALVQ 400 (451)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCHHHHHHCC--CCCCHHHHH
T ss_conf 999999999999985389988863688648998211321348876328888766871002235454247--654328899
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCEEEEEEECC
Q ss_conf 999999721025410474446630578997204
Q gi|254780836|r 451 QILDIYVSRENGKFSRMLDYRTFGYRRIKVLRP 483 (674)
Q Consensus 451 ~Iv~~y~~f~e~e~ski~~~~~Fgy~~vtverp 483 (674)
-=+.+-..+.++..|-++....=|+-.|..-+|
T Consensus 401 I~La~iasY~dGg~SAtv~~r~dg~ativMvsP 433 (451)
T pfam11394 401 IGLALIASYHDGGASATVNRRPDGTATIVMVSP 433 (451)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCEEEEEEECC
T ss_conf 999988631279713688747898068998569
No 182
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=41.23 E-value=24 Score=15.18 Aligned_cols=24 Identities=4% Similarity=0.229 Sum_probs=13.6
Q ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 0799973897134776443268999999884
Q gi|254780836|r 354 GRAAIVLSSSPLFNGRAGSGESEIRRWLLEN 384 (674)
Q Consensus 354 gr~aIV~ngs~LF~G~agsGEs~IRk~lie~ 384 (674)
-|+-||=-|++..- +-+=++++|.
T Consensus 376 ~rI~iVACGTSyhA-------glvaky~~E~ 399 (691)
T PTZ00295 376 ENLILTGCGTSFYA-------ALFAKYLMRY 399 (691)
T ss_pred CEEEEEECCHHHHH-------HHHHHHHHHH
T ss_conf 85999985488999-------9999999999
No 183
>PRK13760 putative RNA-associated protein; Provisional
Probab=40.56 E-value=25 Score=15.11 Aligned_cols=42 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred CCCEEEEECCCCCCCCCCCCCCHHHHHHH--HHHCCC-----EEEEEECCCCCC
Q ss_conf 88079997389713477644326899999--988494-----688831767765
Q gi|254780836|r 352 GGGRAAIVLSSSPLFNGRAGSGESEIRRW--LLENDL-----IEAIVALPTDLF 398 (674)
Q Consensus 352 ~ggr~aIV~ngs~LF~G~agsGEs~IRk~--lie~d~-----ieaII~LP~~lF 398 (674)
.--|++|.+|++ .+|..-+.++++ +...+| +.||+..|+++|
T Consensus 162 ~~~~l~v~iP~~-----~a~~a~~~l~~~g~v~kEeW~~dGs~~~vv~ipaG~~ 210 (233)
T PRK13760 162 EKARIAVKIPGE-----YAGKAYGELAKFGEIKKEEWQSDGSWVAVLEIPAGLQ 210 (233)
T ss_pred HHEEEEEEECHH-----HHHHHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCH
T ss_conf 327999996789-----9889999999747201010158984899999897548
No 184
>KOG3350 consensus
Probab=39.98 E-value=13 Score=16.99 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=11.4
Q ss_pred CEEEEEEECCCCC
Q ss_conf 4189998168567
Q gi|254780836|r 290 KRFHYCLSNPPFG 302 (674)
Q Consensus 290 ~kFD~vlaNPPFg 302 (674)
.+||+|++.|||=
T Consensus 134 ~~fdiivaDPPfL 146 (217)
T KOG3350 134 AHFDIIVADPPFL 146 (217)
T ss_pred HCCCEEEECCCCC
T ss_conf 4016897178654
No 185
>PRK12423 LexA repressor; Provisional
Probab=39.87 E-value=17 Score=16.11 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH--HHHCHHHHHHHHHCCHHHH------HHHHHHCCHH
Q ss_conf 455899999999--7529998999871772357------7544423628
Q gi|254780836|r 93 STNTRNNLESYI--ASFSDNAKAIFEDFDFSST------IARLEKAGLL 133 (674)
Q Consensus 93 ~~~~~~nl~~yi--~gfS~nv~dI~~~f~f~~~------i~~L~~~~~L 133 (674)
+..+-+-+.+|+ +|++|.+++|-+.|+|.+. +..|.+.+.|
T Consensus 8 Q~~iL~fI~~~~~~~G~~Pt~rEI~~~~g~~S~~~v~~hl~~L~~kG~i 56 (202)
T PRK12423 8 RAAILAFIRERIAQAGQPPSLAEIAQAFGFASRSVARKHVQALAEAGLI 56 (202)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCE
T ss_conf 9999999999999629898899999982999867899999999988799
No 186
>PRK11761 cysM cysteine synthase B; Provisional
Probab=39.64 E-value=7.3 Score=18.59 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=24.8
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
Q ss_conf 117665404689999999998531005333225504666
Q gi|254780836|r 209 LYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQEL 247 (674)
Q Consensus 209 IyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEi 247 (674)
.+=.++||||.++-...|+++.++. +.++|.|-
T Consensus 170 ~~V~~vGtGGti~Gia~~lK~~~p~------vkvvgveP 202 (296)
T PRK11761 170 HFVSSMGTTGTIMGVSRYLKEQNPA------VQIVGLQP 202 (296)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCC------CEEEEEEC
T ss_conf 9998427708899999999975899------98999812
No 187
>pfam07530 PRE_C2HC Associated with zinc fingers. This function of this domain is unknown and is often found associated with pfam00096.
Probab=39.04 E-value=22 Score=15.47 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.1
Q ss_pred CEEEEECCCCCEEEEEEECCCCCC
Q ss_conf 104744466305789972044212
Q gi|254780836|r 464 FSRMLDYRTFGYRRIKVLRPLRMS 487 (674)
Q Consensus 464 ~ski~~~~~Fgy~~vtverplr~~ 487 (674)
..+||.-...|-.+|+||||.+.+
T Consensus 43 ~~~I~~ik~l~~~~V~VEr~~k~~ 66 (68)
T pfam07530 43 HKEILKIKTLGGQRVTVERPHKRR 66 (68)
T ss_pred CCCEEEEHHHCCEEEEEECCCCCC
T ss_conf 774788703177379982455567
No 188
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=38.35 E-value=11 Score=17.51 Aligned_cols=22 Identities=0% Similarity=0.009 Sum_probs=9.2
Q ss_pred ECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1176654046899999999985
Q gi|254780836|r 209 LYDPTCGTGGFLTDAMNHVADC 230 (674)
Q Consensus 209 IyDPaCGTGGmL~~a~~~i~~~ 230 (674)
|--|+-.+..+...+...+..+
T Consensus 225 Isg~~~~~~~~y~~~~~~~~~l 246 (913)
T PRK13103 225 ISGQAEDSSKLYIEINRLIPRL 246 (913)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 5068764257899999999999
No 189
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=38.26 E-value=11 Score=17.50 Aligned_cols=11 Identities=9% Similarity=0.564 Sum_probs=4.9
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999997529
Q gi|254780836|r 98 NNLESYIASFS 108 (674)
Q Consensus 98 ~nl~~yi~gfS 108 (674)
..|-.|+|+.+
T Consensus 124 atlp~ylnaL~ 134 (983)
T PRK12900 124 STLPTFLNALT 134 (983)
T ss_pred HHHHHHHHHHC
T ss_conf 99999998636
No 190
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=37.15 E-value=22 Score=15.50 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=22.9
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03117665404689999999998531
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGS 232 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~ 232 (674)
.-+.||-+.|||=++.|.+.+++++.
T Consensus 126 VlllDPmlATG~s~~~ai~~L~~~G~ 151 (208)
T PRK00129 126 VIVVDPMLATGGSMIAAIDLLKKRGA 151 (208)
T ss_pred EEEECCHHHCCHHHHHHHHHHHHCCC
T ss_conf 99878556437669999999996699
No 191
>pfam01321 Creatinase_N Creatinase/Prolidase N-terminal domain. This family includes the N-terminal non-catalytic domains from creatinase and prolidase. The exact function of this domain is uncertain.
Probab=37.08 E-value=28 Score=14.77 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHHHHCCCEEEEEECCCCCCCCCCCCE---EEEEEECCCCCCCCCCEEEEECHHHHHHHHHC
Q ss_conf 8999999884946888317677655788616---99999468874348838997236776576404
Q gi|254780836|r 375 SEIRRWLLENDLIEAIVALPTDLFFRTNIAT---YLWILSNRKTEERRGKVQLINATDLWTSIRNE 437 (674)
Q Consensus 375 s~IRk~lie~d~ieaII~LP~~lFynTgI~t---~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~ 437 (674)
.++|++|-++++=-.+|.=|.|+||=||.+. ++++++.+ +.+++++..+.....+++
T Consensus 3 ~kl~~~m~~~~iDa~li~~~~n~~YlTGf~~~~~~~l~i~~~------~~~~i~~~~~~~~a~~~~ 62 (127)
T pfam01321 3 ERLRELMAEAGLDALLLTSPENIRYLTGFTGSRGLALVVTAD------GATLLTDALRYTEAAEES 62 (127)
T ss_pred HHHHHHHHHCCCCEEEECCHHHHHHHCCCCCCCCEEEEECCC------CCEEEEECCHHHHHHHHC
T ss_conf 999999998699999985678712531887654369998399------788999283489999848
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=36.44 E-value=29 Score=14.70 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=12.6
Q ss_pred CCCCCCCHHHHHHHHHHC
Q ss_conf 776443268999999884
Q gi|254780836|r 367 NGRAGSGESEIRRWLLEN 384 (674)
Q Consensus 367 ~G~agsGEs~IRk~lie~ 384 (674)
||.+|+|-+.+-|.+++.
T Consensus 49 tGe~GtGKTtllr~l~~~ 66 (269)
T TIGR03015 49 TGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 729989889999999984
No 193
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=36.17 E-value=12 Score=17.15 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999752
Q gi|254780836|r 98 NNLESYIASF 107 (674)
Q Consensus 98 ~nl~~yi~gf 107 (674)
..|-.|+|+.
T Consensus 112 atlp~ylnal 121 (908)
T PRK13107 112 ATLPAYLNAL 121 (908)
T ss_pred HHHHHHHHHH
T ss_conf 9999999875
No 194
>PRK10696 C32 tRNA thiolase; Provisional
Probab=36.14 E-value=29 Score=14.67 Aligned_cols=151 Identities=17% Similarity=0.241 Sum_probs=77.6
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHH--HHCCCCCCE----EEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 65764046644206989999999999--721025410----474446630578997204421210088899765532211
Q gi|254780836|r 431 WTSIRNEGKKRRIINDDQRRQILDIY--VSRENGKFS----RMLDYRTFGYRRIKVLRPLRMSFILDKTGLARLEADITW 504 (674)
Q Consensus 431 ~~~~rk~G~Kr~~l~~~~i~~Iv~~y--~~f~e~e~s----ki~~~~~Fgy~~vtverplr~~~~~~~~~~~~~~~~~~~ 504 (674)
|...++.|-. ..-..-|.+.+++++ +-|-.+..+ |... ++ .+++|-|||- .+.+..|++......|
T Consensus 134 y~~A~e~G~n-KIALGHH~DDi~ETfLMNlf~gG~LktM~Pkl~~-d~---g~~~VIRPL~---y~~E~di~~~a~~~~f 205 (311)
T PRK10696 134 YRTATELGAT-KIALGHHRDDILQTLFLNMFYGGKMKGMPPKLMS-DD---GKHIVIRPLA---YCREKDIERFADAKAF 205 (311)
T ss_pred HHHHHHCCCC-EEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEC-CC---CCEEEEEECC---CCCHHHHHHHHHHCCC
T ss_conf 9999986998-7986065055899999999966876367976674-89---9759983042---0159999999997599
Q ss_pred H----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf 0----028454889999999999865320014567776544323443587777189999986542077899765567886
Q gi|254780836|r 505 R----KLSPLHQSFWLDILKPMMQQIYPYGWAESFVKESIKSNEAKTLKVKASKSFIVAFINAFGRKDPRADPVTDVNGE 580 (674)
Q Consensus 505 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~d~~a~~~~d~kg~ 580 (674)
. +++-+........++.+....... ....+..+..+++..-|.
T Consensus 206 PiIpcnlcgsq~~lqR~~ik~ml~~~~~~-----------------------~p~r~~~~~~al~nv~ps---------- 252 (311)
T PRK10696 206 PIIPCNLCGSQPNLQRQVIADMLRDWDKR-----------------------YPGRIETMFSAMQNVVPS---------- 252 (311)
T ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHHHH-----------------------CCCCHHHHHHHHHCCCCC----------
T ss_conf 87416677883678999999999999998-----------------------888289999997548940----------
Q ss_pred EEECCCCCCCEECCCC----CCHHHHHHHHCCCCCCHHHCCCCCCC
Q ss_conf 7156542532007886----99899999748887872222322123
Q gi|254780836|r 581 WIPDTNLTEYENVPYL----ESIQDYFVREVSPHVPDAYIDKIFID 622 (674)
Q Consensus 581 ~~~D~~lrD~E~vpl~----e~i~~yf~rEV~P~~pdAwid~~~~~ 622 (674)
--.|.+|=|+++.--+ ++=+.-|..|-+|-.|.+|.+....+
T Consensus 253 hl~D~~l~~f~~l~~~~~~~~~g~~~f~~~~~~~~~~~~~~~~~~~ 298 (311)
T PRK10696 253 HLCDTNLFDFKGITHGSEVVDGGDLAFDREEIPLQPAGWQPEEDEN 298 (311)
T ss_pred HHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 1047102374467756677888762457643457873333122113
No 195
>pfam02086 MethyltransfD12 D12 class N6 adenine-specific DNA methyltransferase.
Probab=36.00 E-value=29 Score=14.66 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=6.2
Q ss_pred EEEEECCCCC
Q ss_conf 9998168567
Q gi|254780836|r 293 HYCLSNPPFG 302 (674)
Q Consensus 293 D~vlaNPPFg 302 (674)
|+|-..|||-
T Consensus 178 dfvYlDPPY~ 187 (254)
T pfam02086 178 DFVYLDPPYN 187 (254)
T ss_pred CEEEECCCCC
T ss_conf 6899789987
No 196
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.83 E-value=27 Score=14.87 Aligned_cols=11 Identities=9% Similarity=0.156 Sum_probs=6.3
Q ss_pred EEEEEEECCCC
Q ss_conf 18999816856
Q gi|254780836|r 291 RFHYCLSNPPF 301 (674)
Q Consensus 291 kFD~vlaNPPF 301 (674)
.+|+|+..|=.
T Consensus 69 ~~d~vV~SPGI 79 (501)
T PRK02006 69 GVELVALSPGL 79 (501)
T ss_pred CCCEEEECCEE
T ss_conf 89999989900
No 197
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=35.39 E-value=12 Score=17.06 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=10.9
Q ss_pred CEEEEEEECCCCCCCC
Q ss_conf 0578997204421210
Q gi|254780836|r 474 GYRRIKVLRPLRMSFI 489 (674)
Q Consensus 474 gy~~vtverplr~~~~ 489 (674)
||...-=||=.+||-=
T Consensus 465 GY~T~LGERGv~LSGG 480 (576)
T TIGR02204 465 GYDTYLGERGVTLSGG 480 (576)
T ss_pred CCCCCCCCCCCCCCCH
T ss_conf 5467655443026742
No 198
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=35.08 E-value=24 Score=15.18 Aligned_cols=38 Identities=18% Similarity=0.396 Sum_probs=20.1
Q ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEC
Q ss_conf 689999998849468883176776557886169999946887434883899723
Q gi|254780836|r 374 ESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINA 427 (674)
Q Consensus 374 Es~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDA 427 (674)
|-.|=+||...+ |-+|+=-| -..++--+|-|..+++|-
T Consensus 201 ElDIW~YI~~E~-----Ipi~~LYF-----------a~~R~vv~RdG~li~vdd 238 (312)
T PRK12563 201 ELDVWQYIAREK-----IPLVPLYF-----------AKRRPVVERDGLLIMVDD 238 (312)
T ss_pred HHHHHHHHHHHC-----CCCCCCEE-----------CCCCCEEEECCEEEECCC
T ss_conf 789999999828-----89886121-----------156642755894883577
No 199
>KOG2198 consensus
Probab=34.78 E-value=30 Score=14.53 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
++.+|.|-|+--||==.+-.+.+.. ... ...+-..+.+ -.+.|||+|-...-. ...-.+..++...-
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~---~~~---~g~vvaND~d-----~~R~~~L~~q~~~l~--~~~~~v~~~~~~~~ 221 (375)
T KOG2198 155 PGDKVLDMCAAPGGKTAQLLEALHK---DPT---RGYVVANDVD-----PKRLNMLVHQLKRLP--SPNLLVTNHDASLF 221 (375)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHC---CCC---CCEEEECCCC-----HHHHHHHHHHHHCCC--CCCEEEECCCCEEC
T ss_conf 9984442013898448999999723---777---7736753457-----889999999985269--84333431211005
Q ss_pred ------C--CCCCCEEEEEEECCCCCCC-CCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf ------9--9866418999816856765-310001112344226666535777747706599999999961466578807
Q gi|254780836|r 285 ------D--LFTGKRFHYCLSNPPFGKK-WEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGR 355 (674)
Q Consensus 285 ------d--~~~~~kFD~vlaNPPFg~~-Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr 355 (674)
+ .....+||-||+.-|-+.| |-.....+-.+... ..| +.|||.. |+--|...+..||+ ||+
T Consensus 222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~--~~~-~~~L~~L---Q~~iL~rgl~lLk~----GG~ 291 (375)
T KOG2198 222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWK--TQR-ALGLHAL---QLRILRRGLRLLKV----GGR 291 (375)
T ss_pred CCCCCCCCCHHHHHHCCEEEEECCCCCCCCCCCCCHHHHHHHH--HHH-CCCCHHH---HHHHHHHHHHHHCC----CCE
T ss_conf 6410146760334412536871456898430228027666555--411-3597389---99999999987257----877
Q ss_pred EEEE-CCCCCCCCCCCCCCHHH----HHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 9997-38971347764432689----99999884946888317677655
Q gi|254780836|r 356 AAIV-LSSSPLFNGRAGSGESE----IRRWLLENDLIEAIVALPTDLFF 399 (674)
Q Consensus 356 ~aIV-~ngs~LF~G~agsGEs~----IRk~lie~d~ieaII~LP~~lFy 399 (674)
++-= ...||.= -|.- +++.=-.-.+++....||.-.|.
T Consensus 292 lVYSTCSLnpie------NEaVV~~~L~~~~~~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198 292 LVYSTCSLNPIE------NEAVVQEALQKVGGAVELVDVSGDLPGLKRM 334 (375)
T ss_pred EEEECCCCCCHH------HHHHHHHHHHHHCCCCCCEEECCCCCCCEEC
T ss_conf 999425787200------2799999999836854322303656552514
No 200
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=33.45 E-value=20 Score=15.71 Aligned_cols=55 Identities=15% Similarity=0.189 Sum_probs=33.6
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99862276657536817999999997317840110138776403117665404689999999998531005
Q gi|254780836|r 165 RFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHK 235 (674)
Q Consensus 165 kFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~ 235 (674)
+|.-..|-.|=.+-|-++|.+-+-.. ...+=..|||||-++-..+|+++.++..+
T Consensus 144 Qf~NpaN~~aH~~tT~~EI~~~~~~~----------------~d~fVagvGTGGTitGvar~Lk~~~p~i~ 198 (300)
T COG0031 144 QFENPANPEAHYETTGPEIWQQTDGK----------------VDAFVAGVGTGGTITGVARYLKERNPNVR 198 (300)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHCCC----------------CCEEEEECCCCHHHHHHHHHHHHHCCCCE
T ss_conf 43896478989761289999973799----------------99899937852658999999986289837
No 201
>pfam03416 Peptidase_C54 Peptidase family C54.
Probab=33.05 E-value=32 Score=14.35 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=32.7
Q ss_pred HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 89999874024567333761144389999999998622766575368179999999973
Q gi|254780836|r 133 LYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 (674)
Q Consensus 133 L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll 191 (674)
...+++.|.+..-.| .|-|. +++.-....|+.+||.|.|-.+++.+-.|+
T Consensus 73 ~~~Il~~F~D~~~aP--FSIH~-------iv~~g~~~~gk~~GeWfgPs~~a~~lk~L~ 122 (277)
T pfam03416 73 YKKILAWFGDSPDAP--FSIHQ-------FVQMGKSLCGKKPGEWFGPNTVARILKKLV 122 (277)
T ss_pred HHHHHHHHCCCCCCC--CHHHH-------HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 999999847798798--20999-------999889870998655018899999999998
No 202
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626; InterPro: IPR006513 These are sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ. .
Probab=32.79 E-value=33 Score=14.32 Aligned_cols=35 Identities=20% Similarity=0.534 Sum_probs=25.4
Q ss_pred CEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 1699999468874348838997236776576404664420698999999999972
Q gi|254780836|r 404 ATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVS 458 (674)
Q Consensus 404 ~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~ 458 (674)
...|.|++ ..|+|+|+ |.| .|++.+|+.++.+-+.
T Consensus 147 ~SAiIVlD------K~G~V~fV----------KeG----aL~~~diQtV~~L~~~ 181 (184)
T TIGR01626 147 DSAIIVLD------KDGKVKFV----------KEG----ALSEADIQTVVDLVQK 181 (184)
T ss_pred CCEEEEEC------CCCCEEEE----------ECC----CCCHHHHHHHHHHHHH
T ss_conf 86588972------77735577----------557----6681357789999976
No 203
>pfam05088 Bac_GDH Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyse the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.
Probab=32.46 E-value=4.7 Score=19.83 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=46.2
Q ss_pred HHHHHH-HH------CCCEEEEEECCCCCCCCCCCCEEEEEEECC--CCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCH
Q ss_conf 999999-88------494688831767765578861699999468--874348838997236776576404664420698
Q gi|254780836|r 376 EIRRWL-LE------NDLIEAIVALPTDLFFRTNIATYLWILSNR--KTEERRGKVQLINATDLWTSIRNEGKKRRIIND 446 (674)
Q Consensus 376 ~IRk~l-ie------~d~ieaII~LP~~lFynTgI~t~Iwil~k~--K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~ 446 (674)
++|++| |+ +.+|.||...|-+|+||-||.|||=-=+-. --.+|-++-.=|||++.--++ .|.--| |.=
T Consensus 987 e~~~~lg~~~~~~~p~eli~aiL~a~vDLlwnGGIGTYvkas~E~~~~vgDkaNd~~Rv~~~elr~kv--vgEGgN-LG~ 1063 (1526)
T pfam05088 987 EVRAALGIEKDSLTPNELIRAILKAPVDLLWNGGIGTYVKASTETHADVGDRANDALRVNGRELRAKV--VGEGGN-LGV 1063 (1526)
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHCCCHHEEEECCCCCEEECCCCCCHHHCCCCCCCEEECHHHCEEEE--EECCCC-CCC
T ss_conf 99998499956549899999997195140673674133624776622106755642545157843579--951443-133
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780836|r 447 DQRRQILD 454 (674)
Q Consensus 447 ~~i~~Iv~ 454 (674)
.|..+|--
T Consensus 1064 TQ~gRiE~ 1071 (1526)
T pfam05088 1064 TQLGRIEY 1071 (1526)
T ss_pred CCHHHHHH
T ss_conf 10899999
No 204
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=32.07 E-value=31 Score=14.49 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=8.3
Q ss_pred CC-CEEEHHHHHHHH
Q ss_conf 08-723054899989
Q gi|254780836|r 31 FG-KVILPFTLLRRL 44 (674)
Q Consensus 31 Y~-~~ILp~~~Lrrl 44 (674)
|+ .--+|.-++|=|
T Consensus 32 iG~~e~MP~~lI~Af 46 (459)
T TIGR00979 32 IGGKEKMPKELIRAF 46 (459)
T ss_pred CCCCCCCCHHHHHHH
T ss_conf 688877878899999
No 205
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=32.02 E-value=27 Score=14.85 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=19.0
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 657536817999999997317840110138776403117665404689
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL 220 (674)
.-.|.|+||..++.|=+ +. |-=.|.|||.=+
T Consensus 107 ~i~E~Y~~~~a~~~le~--------------g~---vVIF~gGtGnPf 137 (236)
T TIGR02075 107 QICESYIRRKAIKHLEK--------------GK---VVIFSGGTGNPF 137 (236)
T ss_pred CCCCCCCHHHHHHHHHC--------------CC---EEEEECCCCCCC
T ss_conf 41323227899998535--------------97---899955898696
No 206
>PRK08639 threonine dehydratase; Validated
Probab=31.90 E-value=34 Score=14.23 Aligned_cols=49 Identities=14% Similarity=0.256 Sum_probs=32.5
Q ss_pred HHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 9999973178401101387764031176654046899999999985310053332255046666
Q gi|254780836|r 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 185 ~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
.+..+++ .+-|+....|+ -++|.||+++-..-+++..+++. .++|.|-.
T Consensus 165 TiglEI~--------eq~~~~~D~vv-vpvGGGGLiaGia~~lK~~~P~i------kIiGVEp~ 213 (418)
T PRK08639 165 TVAVEIL--------EQLEEEPDYVF-VPVGGGGLISGVTTYLKEVSPKT------KVIGVEPA 213 (418)
T ss_pred HHHHHHH--------HHCCCCCCEEE-EEECCCHHHHHHHHHHHHHCCCC------EEEEEEEC
T ss_conf 6999999--------85688788899-96187368999999998509997------18998158
No 207
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=30.97 E-value=2.6 Score=21.55 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL 220 (674)
-||||+-.+ -.+++.+| +.-+...||||..|-|||=
T Consensus 25 PGE~yvT~~-d~vi~TvL----------GSCVAaCl~Dp~~~IGGMN 60 (237)
T PRK13489 25 PNEFYTTRE-DMVLVTVL----------GSCVAACLHDPVAGIGGMN 60 (237)
T ss_pred CCEEEEECC-CEEEEEEC----------CCEEEEEEECCCCCEEEEE
T ss_conf 971699689-85999616----------6256788865867840154
No 208
>PRK12483 threonine dehydratase; Reviewed
Probab=30.64 E-value=35 Score=14.09 Aligned_cols=74 Identities=22% Similarity=0.404 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCH---HHHHH----HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 3899999999986227665753681---79999----9999731784011013877640311766540468999999999
Q gi|254780836|r 156 SNIYEHLIRRFGSEVSEGAEDFMTP---RDVVH----LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVA 228 (674)
Q Consensus 156 G~iyE~LIrkFae~~~~~aGeffTP---R~Vi~----Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~ 228 (674)
...+++- ++++++.|- -|--| .+||- +-.+|+ .+.|+....|+= +||.||+++-..-+++
T Consensus 142 dea~~~A-~~la~e~g~---~~IhPfDDp~VIaGQGTiglEIl--------eq~p~~lD~V~v-pVGGGGLiaGia~~~K 208 (521)
T PRK12483 142 PDALAHA-LKLAEEEGL---TFVPPFDDPDVIAGQGTVAMEIL--------RQHPGPLDAIFV-PVGGGGLIAGIAAYVK 208 (521)
T ss_pred HHHHHHH-HHHHHHCCC---EEECCCCCHHHHHCCCHHHHHHH--------HHCCCCCCEEEE-CCCCCCHHHHHHHHHH
T ss_conf 9999999-999997498---86076689877214406999999--------867899888997-6787417889999998
Q ss_pred HHHHHCCCCCCEEEECCCCC
Q ss_conf 85310053332255046666
Q gi|254780836|r 229 DCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 229 ~~~~~~~~~~~~~lyGQEin 248 (674)
..+++. .++|.|-.
T Consensus 209 ~~~P~i------kVIGVEpe 222 (521)
T PRK12483 209 YLRPEI------KVIGVEPD 222 (521)
T ss_pred HHCCCC------EEEEEEEC
T ss_conf 619997------08999967
No 209
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=30.53 E-value=25 Score=15.08 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=7.0
Q ss_pred EECCCCCHHHH
Q ss_conf 50466667889
Q gi|254780836|r 242 PHGQELEPETH 252 (674)
Q Consensus 242 lyGQEin~~ty 252 (674)
-+|||+..-..
T Consensus 195 TlGQE~sGy~~ 205 (462)
T COG0114 195 TLGQEFSGYAA 205 (462)
T ss_pred HHHHHHHHHHH
T ss_conf 24435678999
No 210
>KOG1252 consensus
Probab=30.29 E-value=28 Score=14.72 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHCCCCCCCCC--CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999862276657536--817999999997317840110138776403117665404689999999998531005333
Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFM--TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPP 238 (674)
Q Consensus 161 ~LIrkFae~~~~~aGeff--TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~ 238 (674)
+++.+|...+|-.+ || |-+||.+=+. +++ .++=--.||||-++-.-+|+++.++..+
T Consensus 183 ~~l~Qf~np~Np~~--hy~ttg~EI~~q~~---------------g~v-Di~V~gaGTGGTitgvGRylke~~~~~k--- 241 (362)
T KOG1252 183 YILDQFHNPGNPLA--HYETTGPEIWRQLD---------------GKV-DIFVAGAGTGGTITGVGRYLKEQNPNIK--- 241 (362)
T ss_pred HHHHHHCCCCCCCC--CCCCCCHHHHHHHC---------------CCC-CEEEECCCCCCEEEHHHHHHHHHCCCCE---
T ss_conf 87887428888530--12564289999826---------------997-7899626888502006688997589977---
Q ss_pred CEEEECCCCCHH
Q ss_conf 225504666678
Q gi|254780836|r 239 ILVPHGQELEPE 250 (674)
Q Consensus 239 ~~~lyGQEin~~ 250 (674)
+||.|-...
T Consensus 242 ---Vv~vdp~~S 250 (362)
T KOG1252 242 ---VVGVDPQES 250 (362)
T ss_pred ---EEEECCCCC
T ss_conf ---998568733
No 211
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=29.29 E-value=23 Score=15.27 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC----------CCCHHHHHHHHHHHH
Q ss_conf 4567333761144389999999998622766575----------368179999999973
Q gi|254780836|r 143 IELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED----------FMTPRDVVHLATALL 191 (674)
Q Consensus 143 idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGe----------ffTPR~Vi~Lmv~ll 191 (674)
+.||++.-+..+ -++||+=|... ++||- -.||+..-.|+=+|.
T Consensus 130 VEfSAEDATRtd----~dfLIk~~k~A--~eAGADRi~~~DTVGV~~P~km~~l~k~~k 182 (371)
T TIGR02090 130 VEFSAEDATRTD----IDFLIKVFKKA--EEAGADRINVADTVGVLTPQKMEELIKKIK 182 (371)
T ss_pred EEECCCCCCCCC----HHHHHHHHHHH--HHCCCCEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 531778876586----78999998713--321677755078556368267999999999
No 212
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=28.58 E-value=38 Score=13.87 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
+.|---|-.+|+..+- .+ .|+ ++.|-.||.|-=-. |+.. .+ ..+-+-++|+.+
T Consensus 104 KY~lt~tHSev~~a~~-~i----------~pg---kaLDLGCG~GRNsL----yLa~----~G----fdVTA~D~N~~s- 156 (289)
T PRK12335 104 KYNLTPTHSEVLEAAK-TV----------KPG---KALDLGCGQGRNSL----YLAL----LG----FDVTAVDINQAS- 156 (289)
T ss_pred HCCCCCCCHHHHHHHH-HC----------CCC---CEEEECCCCCCCHH----HHHH----CC----CCEEEEECCHHH-
T ss_conf 3389986199999875-26----------887---46660478882278----8975----79----842588689999-
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234--7545799986641899981685676531000111234422666653577774
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQ--GSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPK 330 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~--GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~ 330 (674)
|.+.+-++.-.+. ||.. -| +....++ +.||+|+|---|- .++.
T Consensus 157 -l~~L~~ia~~E~L--------~i~~~~yD-IN~a~l~-~~YDfI~STVV~m--------FL~~---------------- 201 (289)
T PRK12335 157 -LENLQQIAEKENL--------NIRAGSYD-INSASLQ-EEYDFILSTVVLM--------FLNP---------------- 201 (289)
T ss_pred -HHHHHHHHHHCCC--------CCCCEEEC-CCCCCCC-CCCCEEEEEEEEE--------EECH----------------
T ss_conf -9999999997198--------87725751-6666667-7767899967886--------4287----------------
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf 770659999999996146657880799973
Q gi|254780836|r 331 ISDGSMLFLMHLANKLELPPNGGGRAAIVL 360 (674)
Q Consensus 331 ~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ 360 (674)
--+..+|.-|...+..||---||.
T Consensus 202 ------~~ip~iI~nMQ~~T~~gGyNlIV~ 225 (289)
T PRK12335 202 ------ERIPDIIKNMQEHTNPGGYNLIVC 225 (289)
T ss_pred ------HHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf ------786999999998447998689998
No 213
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=28.37 E-value=39 Score=13.84 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 76114438999999999862276657536817999999997317840110138776403117665404689999
Q gi|254780836|r 150 VPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDA 223 (674)
Q Consensus 150 v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a 223 (674)
+.+... ..+|+.|+.|.+.--....| +|||+.++.|-.-|-..+...+...-....-||=|+-.-|.+=...
T Consensus 130 vp~e~y-~~~E~~i~~i~~~l~~~~~~-~s~~efi~elGk~l~~~e~SiL~~A~~~~VPIf~Pai~DssiG~~L 201 (318)
T COG1899 130 VPNEEY-EVFEEFIREILEKLLGIKKE-WSTREFIYELGKRLNDDESSILYTAAKNGVPIFCPAITDSSIGDML 201 (318)
T ss_pred CCHHHH-HHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHH
T ss_conf 370778-99999999999986402454-4399999999754076503599999984998776875531077889
No 214
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=28.25 E-value=39 Score=13.83 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHCCCC---------CC--CCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 4389999999998622766---------57--53681799999999731784011013877640311766540468999
Q gi|254780836|r 155 MSNIYEHLIRRFGSEVSEG---------AE--DFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTD 222 (674)
Q Consensus 155 mG~iyE~LIrkFae~~~~~---------aG--effTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~ 222 (674)
-+|.|+.+-+|.++...+. .| +|-||.+|++-|.+.+-.. ..+...+=|-|+.|.-.+--.
T Consensus 12 ~~y~f~~i~~~~~~~~~~~~~~dvI~L~iGePdf~~P~~i~~a~~~ai~~~-------~~~~~~~gY~~~~G~~~LRea 83 (402)
T TIGR03542 12 SGYLFSEINRRVNEFRKKNPSASVIRLGIGDTTQPLPASVIEAFHEAVDEL-------ASEETYRGYGPEQGLPALREA 83 (402)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCHHHHHHH
T ss_conf 998608999999999985889985589899989998999999999999712-------246786777974064999999
No 215
>COG3645 Uncharacterized phage-encoded protein [Function unknown]
Probab=27.73 E-value=7.9 Score=18.34 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=13.6
Q ss_pred CCHHHHHHHHHHCCCEEEE
Q ss_conf 3268999999884946888
Q gi|254780836|r 372 SGESEIRRWLLENDLIEAI 390 (674)
Q Consensus 372 sGEs~IRk~lie~d~ieaI 390 (674)
-||-+.++||+||.++-..
T Consensus 59 ige~~l~~~L~e~~~l~~~ 77 (135)
T COG3645 59 IGENRLFAWLRENKYLIKR 77 (135)
T ss_pred CCHHHHHHHHHHCCEEEEE
T ss_conf 3778999999987878970
No 216
>TIGR00268 TIGR00268 conserved hypothetical protein TIGR00268; InterPro: IPR005232 This family of conserved hypothetical proteins has no known function but is predicted to be part of the wider PP-loop superfamily ..
Probab=27.45 E-value=21 Score=15.53 Aligned_cols=55 Identities=16% Similarity=0.407 Sum_probs=30.0
Q ss_pred CEEEEECHH-HHHH--------HHH-CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCEEEEEEE
Q ss_conf 389972367-7657--------640-4664420698999999999972102541047444-66305789972
Q gi|254780836|r 421 KVQLINATD-LWTS--------IRN-EGKKRRIINDDQRRQILDIYVSRENGKFSRMLDY-RTFGYRRIKVL 481 (674)
Q Consensus 421 kV~lIDAs~-~~~~--------~rk-~G~Kr~~l~~~~i~~Iv~~y~~f~e~e~ski~~~-~~Fgy~~vtve 481 (674)
|.+.||-.. .|-. +|+ .|=.+-|+.+++|.+|+.--.. ++ |.+. .+|||+.|+|.
T Consensus 190 kL~~v~eaE~~~l~~~g~~qvRVR~y~nlAviE~~~~~l~kl~~~~~~---Ge---~~~~~k~~GF~~V~~d 255 (263)
T TIGR00268 190 KLKKVDEAEEIVLRRAGVKQVRVRNYDNLAVIEVAEDELSKLLNEAEE---GE---VVDKLKDIGFRKVLID 255 (263)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEECHHHHHHHHHHHHH---HH---HHHHHHHCCCEEEEEE
T ss_conf 877699999999998356605765267657996285889999863132---17---9999974473157763
No 217
>KOG4319 consensus
Probab=27.02 E-value=21 Score=15.64 Aligned_cols=18 Identities=39% Similarity=0.781 Sum_probs=11.5
Q ss_pred ECCCCCCHHH----HHHHHHHH
Q ss_conf 1176654046----89999999
Q gi|254780836|r 209 LYDPTCGTGG----FLTDAMNH 226 (674)
Q Consensus 209 IyDPaCGTGG----mL~~a~~~ 226 (674)
-+||+||+|- -++++.++
T Consensus 17 ~hd~~~gsGrsKgrtksEaaeh 38 (70)
T KOG4319 17 RHDPACGSGRSKGRTKSEAAEH 38 (70)
T ss_pred CCCCCCCCCCCCCCCHHHHHHH
T ss_conf 7673446763234427899874
No 218
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=26.84 E-value=41 Score=13.67 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCC--CCCCEEEEEEECC
Q ss_conf 32689999998849468883176776557--8861699999468
Q gi|254780836|r 372 SGESEIRRWLLENDLIEAIVALPTDLFFR--TNIATYLWILSNR 413 (674)
Q Consensus 372 sGEs~IRk~lie~d~ieaII~LP~~lFyn--TgI~t~Iwil~k~ 413 (674)
.|-|++-..++.+.+..---.++++=|-| -||...=|+.-.+
T Consensus 379 NGVsklH~el~k~~~~~~~~~~~p~~i~nvTNGIt~rrWl~~~n 422 (750)
T COG0058 379 NGVSKLHSELSKKMWFADFHGLYPEKINNVTNGITPRRWLAPAN 422 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 86999999999988788724048665316668838736651334
No 219
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=26.70 E-value=41 Score=13.65 Aligned_cols=49 Identities=29% Similarity=0.298 Sum_probs=35.4
Q ss_pred HHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 42362899998740245673337611443899999999986227665753681799999999731
Q gi|254780836|r 128 EKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLL 192 (674)
Q Consensus 128 ~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~ 192 (674)
.|+|+|| +=.-|+.| =||.=|+.|+|- |+- --.+-|||+|=.-+...|.
T Consensus 22 lKANILy-aN~AF~~i-----------TGY~~eE~iGkN-ES~---LSn~tTPpeVYQaLWg~la 70 (496)
T TIGR02938 22 LKANILY-ANDAFSEI-----------TGYAKEEVIGKN-ESV---LSNRTTPPEVYQALWGSLA 70 (496)
T ss_pred HHHHHHH-HHHHHCCC-----------CCCCCCCCCCCC-CCC---CCCCCCCHHHHHHHHHHHH
T ss_conf 1456999-95663215-----------586562111255-401---2685887179999998863
No 220
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=23 Score=15.33 Aligned_cols=55 Identities=24% Similarity=0.202 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHCCCEEEEEECCCCCCCCCC---CCEEEEEEECCCCCCCCCCEEEEECHHHH
Q ss_conf 3268999999884946888317677655788---61699999468874348838997236776
Q gi|254780836|r 372 SGESEIRRWLLENDLIEAIVALPTDLFFRTN---IATYLWILSNRKTEERRGKVQLINATDLW 431 (674)
Q Consensus 372 sGEs~IRk~lie~d~ieaII~LP~~lFynTg---I~t~Iwil~k~K~~~rkgkV~lIDAs~~~ 431 (674)
-|+|.||++=++++.+..-..||+.-+++-| ..-++|.|+=+ .|.-+-+||..+-
T Consensus 65 yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~-----egvaf~~d~~t~~ 122 (262)
T COG3823 65 YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWK-----EGVAFKYDADTLE 122 (262)
T ss_pred CCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCEEEEEEEC-----CCEEEEECHHHHH
T ss_conf 155236788436750899740697320023500305558999942-----5604898767865
No 221
>pfam06450 NhaB Bacterial Na+/H+ antiporter B (NhaB). This family consists of several bacterial Na+/H+ antiporter B (NhaB) proteins. The exact function of this family is unknown.
Probab=26.57 E-value=36 Score=14.03 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=9.8
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 5368179999999973
Q gi|254780836|r 176 DFMTPRDVVHLATALL 191 (674)
Q Consensus 176 effTPR~Vi~Lmv~ll 191 (674)
+-.|+|+..+|.++-+
T Consensus 292 ~krT~~~ka~L~vQa~ 307 (515)
T pfam06450 292 EKRTNQDKIKLIVQAI 307 (515)
T ss_pred HHCCHHHHHHHHHHHH
T ss_conf 8389998889999999
No 222
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=26.50 E-value=5.7 Score=19.26 Aligned_cols=37 Identities=22% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFL 220 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL 220 (674)
.||||--++--.+++.+| ..-....+|||..+-|||.
T Consensus 14 ~GE~~Vs~~p~~~itT~L----------GSCVavclyD~~~~IGGMn 50 (184)
T PRK13497 14 QGEYKVLSDPNAVLSTIL----------GSCVAACLRDPVAGVGGMN 50 (184)
T ss_pred CCEEEEECCCCEEEEEEC----------CCEEEEEEECCCCCEEEEE
T ss_conf 660799759986999815----------4438999997877860277
No 223
>KOG0736 consensus
Probab=26.28 E-value=42 Score=13.60 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=22.3
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 999961466578807999738971347764432689999
Q gi|254780836|r 341 HLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRR 379 (674)
Q Consensus 341 h~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk 379 (674)
-+.+-+.|....+++ ++-++-++|-+|..|+|-...=+
T Consensus 412 ~l~~vl~p~~~~s~~-~~~~~~~vLLhG~~g~GK~t~V~ 449 (953)
T KOG0736 412 ELVAVLSPQKQPSGA-LLTLNPSVLLHGPPGSGKTTVVR 449 (953)
T ss_pred HHHHHHCCCCCCCHH-CCCCCEEEEEECCCCCCHHHHHH
T ss_conf 999984865585300-13355379986799987579999
No 224
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=26.14 E-value=42 Score=13.59 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=42.6
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64031176654046899999999985310053332255046666788999999989808875334566668234754579
Q gi|254780836|r 205 MIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSK 284 (674)
Q Consensus 205 ~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~ 284 (674)
...+.+.|.|+.|-|=-.-..+. -.+-..++++...+.|+-.+ .+. +||...-.--.
T Consensus 43 ry~~alE~GCa~G~lT~~LA~RC------------drLla~Dvs~~Av~~Ar~Rl--a~~---------~hV~v~~~~vp 99 (201)
T pfam05401 43 TIANALEVGCAAGAFTERLAPYC------------QRLTVIDVMPEAIARARLRM--KKW---------SHISWIVSDVQ 99 (201)
T ss_pred HHHHHCCCCCCCCHHHHHHHHHH------------HHHHHHCCCHHHHHHHHHHH--CCC---------CCCEEEECCCC
T ss_conf 33002043566248789999987------------46732136299999999985--579---------98289825666
Q ss_pred CCCCCCEEEEEEEC
Q ss_conf 99866418999816
Q gi|254780836|r 285 DLFTGKRFHYCLSN 298 (674)
Q Consensus 285 d~~~~~kFD~vlaN 298 (674)
..++..+||.|+.-
T Consensus 100 ~~wP~~~FDLIV~S 113 (201)
T pfam05401 100 QFSTNELFDLIVVA 113 (201)
T ss_pred CCCCCCCEEEEEEE
T ss_conf 65998886279751
No 225
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=25.91 E-value=43 Score=13.56 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=40.4
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CC
Q ss_conf 3117665404689999999998531005333225504666678899999998980887533456666823475457--99
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLS--KD 285 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~--~d 285 (674)
.|.|-.||-|||= .+.+ .++ .-.+++.|+++..-+.-+.|- +. .+..||--. ..
T Consensus 2 ~v~dLFsG~GG~s-~Gl~-------~aG---~~~~~a~e~d~~a~~t~~~N~---~~----------~~~~~Di~~~~~~ 57 (275)
T cd00315 2 RVIDLFAGIGGFR-LGLE-------KAG---FEIVAANEIDKSAAETYEANF---PN----------KLIEGDITKIDEK 57 (275)
T ss_pred CEEEECCCCCHHH-HHHH-------HCC---CEEEEEEECCHHHHHHHHHHC---CC----------CCCCCCHHHCCCC
T ss_conf 5999767807899-9999-------869---989999968999999999887---99----------9525886446532
Q ss_pred CCCCCEEEEEEECCCC
Q ss_conf 9866418999816856
Q gi|254780836|r 286 LFTGKRFHYCLSNPPF 301 (674)
Q Consensus 286 ~~~~~kFD~vlaNPPF 301 (674)
.+ ...+|++++-||-
T Consensus 58 ~~-~~~vDll~ggpPC 72 (275)
T cd00315 58 DF-IPDIDLLTGGFPC 72 (275)
T ss_pred CC-CCCCCEEEECCCC
T ss_conf 13-7887889868999
No 226
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=25.16 E-value=44 Score=13.48 Aligned_cols=33 Identities=21% Similarity=0.261 Sum_probs=23.4
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCH
Q ss_conf 0311766540468999999999853100533322550466667
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEP 249 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~ 249 (674)
.+|.|=+|+.||+.-.+.+.. . ...++|.++.+
T Consensus 23 ~~vlDLg~aPGgwsq~~~~~~----~------~~~v~~vDl~~ 55 (176)
T pfam01728 23 KTVLDLGAAPGGFSQVLLERG----A------KGRVVAVDLGP 55 (176)
T ss_pred CEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCC
T ss_conf 999996899976999999856----6------87399997344
No 227
>TIGR01485 SPP_plant-cyano sucrose phosphatase; InterPro: IPR012847 This entry describes the sucrose phosphate phosphohydrolase from plants and cyanobacteria (SPP). However, a closely related group of sequences from bacteria and archaea may prove to catalyze the same reaction. SPP is a member of the Class IIB subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain, which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain..
Probab=24.82 E-value=28 Score=14.79 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=6.1
Q ss_pred EEEEEEECCCCCC
Q ss_conf 1899981685676
Q gi|254780836|r 291 RFHYCLSNPPFGK 303 (674)
Q Consensus 291 kFD~vlaNPPFg~ 303 (674)
+|.-..-=||-.+
T Consensus 108 ~F~~L~~Qp~~eQ 120 (257)
T TIGR01485 108 KFEELKPQPDSEQ 120 (257)
T ss_pred CHHHHCCCCCCCC
T ss_conf 5023057972104
No 228
>pfam00685 Sulfotransfer_1 Sulfotransferase domain.
Probab=24.62 E-value=45 Score=13.41 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=18.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4664420698999999999972
Q gi|254780836|r 437 EGKKRRIINDDQRRQILDIYVS 458 (674)
Q Consensus 437 ~G~Kr~~l~~~~i~~Iv~~y~~ 458 (674)
.|+.++.|+++++++|-+.+.+
T Consensus 227 ~g~Wk~~ls~e~~~~i~~~~~~ 248 (254)
T pfam00685 227 VGDWKNYFTVEQAEKFDEIYQE 248 (254)
T ss_pred CCCCHHHCCHHHHHHHHHHHHH
T ss_conf 8985123989999999999999
No 229
>PRK09547 nhaB sodium/proton antiporter; Reviewed
Probab=24.26 E-value=40 Score=13.78 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=10.4
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 5368179999999973
Q gi|254780836|r 176 DFMTPRDVVHLATALL 191 (674)
Q Consensus 176 effTPR~Vi~Lmv~ll 191 (674)
+-.|+|+..+|.++-+
T Consensus 292 ~~rt~~~~~~L~vQ~~ 307 (517)
T PRK09547 292 AKRTRQDKAKLIVQAL 307 (517)
T ss_pred HCCCHHHHHHHHHHHH
T ss_conf 7089998789999999
No 230
>KOG1503 consensus
Probab=24.10 E-value=34 Score=14.18 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHCCCC----CCCCEEEEECCC
Q ss_conf 999999999614665----788079997389
Q gi|254780836|r 336 MLFLMHLANKLELPP----NGGGRAAIVLSS 362 (674)
Q Consensus 336 ~lFlqh~i~klk~~~----~~ggr~aIV~ng 362 (674)
.+++--+++|-||+. .-|||+||+...
T Consensus 225 ~~~lp~~~~k~kppltvvgdvggriaimvdd 255 (354)
T KOG1503 225 SLELPAQISKEKPPLTVVGDVGGRIAIMVDD 255 (354)
T ss_pred CCCCCHHHCCCCCCEEEEECCCCEEEEEEHH
T ss_conf 5457144325699837982268658998533
No 231
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=24.02 E-value=7.3 Score=18.57 Aligned_cols=76 Identities=17% Similarity=0.161 Sum_probs=38.6
Q ss_pred HHHHHHHCC-CCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 999986227-6657536817999999997317840110138776403117665404689999999998531005333225
Q gi|254780836|r 163 IRRFGSEVS-EGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILV 241 (674)
Q Consensus 163 IrkFae~~~-~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~ 241 (674)
=++|..+.- =-.||||.-.+. +++.+| ..-...++|||..+-|||.- ++. +....
T Consensus 6 ~~~~~~~~v~i~pGe~~vs~d~--~I~TvL----------GSCVav~L~Dp~~~iGGM~H----fmL---P~~~~----- 61 (163)
T PRK13494 6 NFKLKRDVTIIVPGEAFVSNDR--VISTIL----------GSCVAVVLYDESRNLIGMNH----YVL---VKSDL----- 61 (163)
T ss_pred HHHCCCCEEEECCCEEEEECCC--EEEEEC----------CCEEEEEEECCCCCEEEEEE----EEC---CCCCC-----
T ss_conf 1321764799829817973895--899863----------33489999989878436888----960---58877-----
Q ss_pred EECCCCCHHHHHHHHHHHHHHC
Q ss_conf 5046666788999999989808
Q gi|254780836|r 242 PHGQELEPETHAVCVAGMLIRR 263 (674)
Q Consensus 242 lyGQEin~~tyaIak~nMli~g 263 (674)
-....++.-|+-.-|.+||..
T Consensus 62 -~~~~~~~~rYgd~Am~~Li~~ 82 (163)
T PRK13494 62 -VISPLQRGRYGVYAIPMLIDA 82 (163)
T ss_pred -CCCCCCCCCHHHHHHHHHHHH
T ss_conf -889653323299999999999
No 232
>PRK05926 hypothetical protein; Provisional
Probab=23.97 E-value=29 Score=14.62 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf 3899999999986227665753681799999
Q gi|254780836|r 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVHL 186 (674)
Q Consensus 156 G~iyE~LIrkFae~~~~~aGeffTPR~Vi~L 186 (674)
.+-|+++++.--+....-.=--|||-||..+
T Consensus 131 ~~yY~~l~~~ik~~~P~v~ihaft~~EI~~~ 161 (371)
T PRK05926 131 LAYYEELFSKIKENFPDIHIKALTAIEYAYL 161 (371)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf 6999999999997589874144889999999
No 233
>pfam06134 RhaA L-rhamnose isomerase (RhaA). This family consists of several bacterial L-rhamnose isomerase proteins (EC:5.3.1.14).
Probab=23.84 E-value=32 Score=14.35 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=6.9
Q ss_pred CCCCEEEEECH
Q ss_conf 48838997236
Q gi|254780836|r 418 RRGKVQLINAT 428 (674)
Q Consensus 418 rkgkV~lIDAs 428 (674)
++++++.+|+-
T Consensus 249 ~~~~~~~lD~G 259 (416)
T pfam06134 249 TRDKLCCLDAG 259 (416)
T ss_pred HCCCEEEEECC
T ss_conf 44957885368
No 234
>TIGR02978 phageshock_pspC phage shock protein C; InterPro: IPR014320 All members of this protein are the phage shock protein PspC. The phage shock regulon is restricted to the Proteobacteria and somewhat sparsely distributed there. It is expressed, under positive control of a sigma-54-dependent transcription factor; PspF, which binds and is modulated by PspA. Stresses that induce the psp regulon include phage secretin over expression, ethanol, heat shock and protein export defects..
Probab=23.75 E-value=34 Score=14.24 Aligned_cols=41 Identities=20% Similarity=0.430 Sum_probs=25.9
Q ss_pred EECCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 425866665017---99898999999999999999999987139
Q gi|254780836|r 634 EINFNRFFYQYQ---PSRKLQDIDAELKGVEAQIATLLEEMATE 674 (674)
Q Consensus 634 EI~F~r~FY~y~---~~r~l~ei~~~i~~le~~i~~ll~~~~~~ 674 (674)
|+.--+=||+.. |-+.|.+|++++..+|.+++.+-+=|+|+
T Consensus 74 ~~~vk~k~Wq~g~~~p~~~L~~~~~~~~~~e~RLr~mE~yVTS~ 117 (128)
T TIGR02978 74 EHEVKSKFWQAGQTSPKQALREVKRELRRLERRLRNMERYVTSD 117 (128)
T ss_pred CCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCEEECC
T ss_conf 01145410022057888999999999999888989768532068
No 235
>PRK09234 fbiC FO synthase; Reviewed
Probab=23.68 E-value=25 Score=15.04 Aligned_cols=16 Identities=44% Similarity=0.686 Sum_probs=12.4
Q ss_pred CCEEEHHHHHHHHHHH
Q ss_conf 8723054899989674
Q gi|254780836|r 32 GKVILPFTLLRRLECA 47 (674)
Q Consensus 32 ~~~ILp~~~Lrrld~~ 47 (674)
++|.+|+|.|-|=.|-
T Consensus 75 ~kVFiPLT~lCrd~C~ 90 (846)
T PRK09234 75 RKVFIPLTRLCRDRCH 90 (846)
T ss_pred CCCCCCCCHHHHCCCC
T ss_conf 8643143068763688
No 236
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=23.60 E-value=47 Score=13.28 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=50.7
Q ss_pred EEEECCCCCC-CCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE-ECHHHHHH
Q ss_conf 9997389713-477644326899999988494688831767765578861699999468874348838997-23677657
Q gi|254780836|r 356 AAIVLSSSPL-FNGRAGSGESEIRRWLLENDLIEAIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLI-NATDLWTS 433 (674)
Q Consensus 356 ~aIV~ngs~L-F~G~agsGEs~IRk~lie~d~ieaII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lI-DAs~~~~~ 433 (674)
+.-|+.||+= -+=.||+.+ ++|+-|=.-+.=|+=-+=-.+||= +..=|=|| +|| |+|= =|-++|+-
T Consensus 249 A~FiVTGSvNQc~~EAGtSd-~Vk~lLa~~~v~DtayAPAgDMFE---~GvklQVL-------KrG-tlFP~RANkLY~L 316 (449)
T TIGR02814 249 ADFIVTGSVNQCTVEAGTSD-EVKKLLAKADVQDTAYAPAGDMFE---LGVKLQVL-------KRG-TLFPARANKLYEL 316 (449)
T ss_pred CCEEECCCHHHCCCCCCCCH-HHHHHHHCCCCCCCCCCCCHHHHH---CCCEEEEE-------ECC-CCCHHHCCHHHHH
T ss_conf 42574186120033458886-799998158976501365200544---27768884-------025-2321011115798
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 64046644206989999999999
Q gi|254780836|r 434 IRNEGKKRRIINDDQRRQILDIY 456 (674)
Q Consensus 434 ~rk~G~Kr~~l~~~~i~~Iv~~y 456 (674)
.|+=|+= .+|.+.-+++|=+.|
T Consensus 317 Yr~YdSl-e~l~~~~r~~lE~~~ 338 (449)
T TIGR02814 317 YRRYDSL-EELDAKTRAQLEKKY 338 (449)
T ss_pred HCCCCCH-HHCCHHHHHHHHHHH
T ss_conf 6389884-214879999999986
No 237
>PRK08638 threonine dehydratase; Validated
Probab=23.32 E-value=48 Score=13.25 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 654046899999999985310053332255046666
Q gi|254780836|r 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 213 aCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
+||+||+++-...++++.++. ..++|-|-.
T Consensus 182 pvGgGGl~~Gi~~~lk~~~p~------~~vigVepe 211 (329)
T PRK08638 182 PIGGGGLIAGIAVALKSINPT------IHIIGVQSE 211 (329)
T ss_pred EECCHHHHHHHHHHHHHHCCC------CEEEEEEEC
T ss_conf 427438999999999974999------879999879
No 238
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=23.31 E-value=48 Score=13.25 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 6540468999999999853100533322550466
Q gi|254780836|r 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674)
Q Consensus 213 aCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674)
++|+||+++-...++++.++. ..++|.|
T Consensus 160 ~vG~Gg~~~G~~~~~k~~~~~------~~ii~ve 187 (244)
T cd00640 160 PVGGGGNIAGIARALKELLPN------VKVIGVE 187 (244)
T ss_pred EECCHHHHHHHHHHHHHCCCC------CEEEEEE
T ss_conf 768448799999999962999------9699996
No 239
>PRK08526 threonine dehydratase; Provisional
Probab=23.27 E-value=48 Score=13.24 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHH----HHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 389999999998622766575368179999----9999731784011013877640311766540468999999999853
Q gi|254780836|r 156 SNIYEHLIRRFGSEVSEGAEDFMTPRDVVH----LATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCG 231 (674)
Q Consensus 156 G~iyE~LIrkFae~~~~~aGeffTPR~Vi~----Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~ 231 (674)
-..+++- ++++++.|-.-=.-|-..+|+- +..+|+ .+.|. ...|.= +||.||+++-..-+++..+
T Consensus 125 ~ea~~~A-~~~a~~~g~~~ihpfdd~~vIaGqGTiglEil--------eq~~d-~D~vvv-pvGGGGLisGia~a~K~~~ 193 (403)
T PRK08526 125 DEAYAFA-LEYAKENNLTFIHPFEDEEVMAGQGTIALEML--------DEISD-LDMIVV-PVGGGGLISGIASAAKQIN 193 (403)
T ss_pred HHHHHHH-HHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHH--------HHCCC-CCEEEE-CCCCCCHHHHHHHHHHHHC
T ss_conf 8999999-99998604305483578657625323899999--------75568-998998-5888616899999998629
Q ss_pred HHCCCCCCEEEECCCCC
Q ss_conf 10053332255046666
Q gi|254780836|r 232 SHHKIPPILVPHGQELE 248 (674)
Q Consensus 232 ~~~~~~~~~~lyGQEin 248 (674)
++. .++|.|-.
T Consensus 194 P~i------kViGVEpe 204 (403)
T PRK08526 194 PNI------KIIGVGAK 204 (403)
T ss_pred CCC------CEEEECCC
T ss_conf 988------38996647
No 240
>TIGR01068 thioredoxin thioredoxin; InterPro: IPR005746 Thioredoxins , , , are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. TR-S_2 + NADPH + H^+ -> TR-(SH)_2 + NADP^+ (1) trx-S_2 + TR-(SH)_2 -> trx-(SH)_2 + TR-S_2 (2) Protein-S_2 + trx-(SH)_2 -> Protein-(SH)_2 + trx-S_2 (3) In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide (steps 1 and 2). Reduced thioredoxin then directly reduces the disulphide in the substrate protein (step 3) . Protein disulphide isomerase (PDI), a resident foldase of the endoplasmic recticulum, is a multi-functional protein that catalyses the formation and isomerisation of disulphide bonds during protein folding , . PDI contains 2 redox active domains, near the N- and C-termini, that are similar to thioredoxin: both contribute to disulphide isomerase activity, but are functionally non-equivalent . Interestingly, a mutant PDI, with all 4 of the active cysteines replaced by serine, displays a low but detectable level of disulphide isomerase activity . Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity . A number of endoplasmic reticulum proteins that differ from the PDI major isozyme contain 2 (ERp60, ERp5) or 3 (ERp72 ) thioredoxin domains; all of them seem to be PDIs. 3D-structures have been determined for a number of thioredoxins . The molecule has a doubly-wound alternating alpha/beta fold, consisting of a 5-stranded parallel beta-sheet core, enclosed by 4 alpha-helices. The active site disulphide is located at the N-terminus of helix 2 in a short segment that is separated from the rest of the helix by a kink caused by a conserved proline. The 4-membered disulphide ring is located on the surface of the protein. A flat hydrophobic surface lies adjacent to the disulphide, which presumably facilitates interaction with other proteins. One invariant feature of all thioredoxins is a cis-proline located in a loop preceding beta-strand 4. This residue is positioned in van der Waals contact with the active site cysteines and is important both for stability and function . Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase . Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0006662 glycerol ether metabolic process, 0045454 cell redox homeostasis.
Probab=23.15 E-value=46 Score=13.36 Aligned_cols=19 Identities=16% Similarity=0.604 Sum_probs=9.9
Q ss_pred ECCCCCCHHHHHHHHHHHH
Q ss_conf 1176654046899999999
Q gi|254780836|r 209 LYDPTCGTGGFLTDAMNHV 227 (674)
Q Consensus 209 IyDPaCGTGGmL~~a~~~i 227 (674)
-|=|-||-.=|+.=-.+-+
T Consensus 21 FWA~WCGPCKm~aP~lee~ 39 (101)
T TIGR01068 21 FWAPWCGPCKMIAPILEEL 39 (101)
T ss_pred EECCCCCCCCCHHHHHHHH
T ss_conf 4359998734424688888
No 241
>pfam08405 Calici_PP_N Viral polyprotein N-terminal. This domain is found at the N-terminus of non-structural viral polyproteins of the Caliciviridae subfamily.
Probab=23.00 E-value=49 Score=13.21 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHHHHHH-HCHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999975-2999899987177235775444236289999874024567333761144389999999998622766575
Q gi|254780836|r 98 NNLESYIAS-FSDNAKAIFEDFDFSSTIARLEKAGLLYKICKNFSGIELHPDTVPDRVMSNIYEHLIRRFGSEVSEGAED 176 (674)
Q Consensus 98 ~nl~~yi~g-fS~nv~dI~~~f~f~~~i~~L~~~~~L~~vI~~F~~idL~p~~v~n~~mG~iyE~LIrkFae~~~~~aGe 176 (674)
..+-.-|+| ||.-+++++.+. .-= +|++..++.|+.- || |-|-+| -.+|.- |-
T Consensus 141 daiL~al~~lvsrP~k~ll~kl---------KPL----NiLnils~CDWTF-------~G-iVe~~i-LlaELF----gv 194 (358)
T pfam08405 141 DAILAALNGLVSRPIKDLLGKL---------KPL----NVLNILSSCDWTF-------MG-IVETVI-LLAELF----GV 194 (358)
T ss_pred HHHHHHHHHHHCCHHHHHHHHC---------CCH----HHHHHHHHCCCCH-------HH-HHHHHH-HHHHHH----CC
T ss_conf 9999998766421289997434---------753----7999987088513-------76-999999-999995----45
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 368179999999973
Q gi|254780836|r 177 FMTPRDVVHLATALL 191 (674)
Q Consensus 177 ffTPR~Vi~Lmv~ll 191 (674)
|+||.+|..+|++|+
T Consensus 195 fWtPPDVsnfiasll 209 (358)
T pfam08405 195 FWTPPDVSNFIASLL 209 (358)
T ss_pred CCCCCHHHHHHHHHC
T ss_conf 179820889999866
No 242
>TIGR00235 udk uridine kinase; InterPro: IPR000764 Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP A cDNA for uridine kinase from mouse brain was found which encodes a protein of 277 amino acids. A truncated form of the cDNA was expressed in Escherichia coli, and shown to display uridine kinase activity and to readily form a tetramer, the most active form of the wild-type enzyme. Sequence analysis has identified three ATP-binding site consensus motifs. The predicted secondary structure, and sequence comparison with kinases of known structure, is consistent with uridine kinase having the alpha/beta core nucleotide-binding fold common to many kinases .; GO: 0005524 ATP binding, 0016773 phosphotransferase activity alcohol group as acceptor.
Probab=22.90 E-value=49 Score=13.19 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred CCCCCCCH----HHHHHHHHHCCC--EEEEEECCCCCCCCC
Q ss_conf 77644326----899999988494--688831767765578
Q gi|254780836|r 367 NGRAGSGE----SEIRRWLLENDL--IEAIVALPTDLFFRT 401 (674)
Q Consensus 367 ~G~agsGE----s~IRk~lie~d~--ieaII~LP~~lFynT 401 (674)
+|+.|||- +.+-+.|.+.=- ++.|+-+|.+.||+-
T Consensus 16 ~GgSgSGKs~iATtV~~~i~~~~~~kv~~~~~I~~D~YYK~ 56 (220)
T TIGR00235 16 SGGSGSGKSLIATTVARKIYEQLGKKVLEIVLISQDNYYKD 56 (220)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf 17661015678999999999983140014577503244588
No 243
>cd01327 KAZAL_PSTI Kazal-type pancreatic secretory trypsin inhibitors (PSTI) and related proteins, including the second domain of the ovomucoid turkey inhibitor and the C-terminal domain of the esophagus cancer-related gene-2 protein (ECRG-2), are members of the superfamily of kazal-type proteinase inhibitors and follistatin-like proteins.
Probab=22.84 E-value=26 Score=14.98 Aligned_cols=12 Identities=58% Similarity=1.210 Sum_probs=10.0
Q ss_pred EECCCCCCHHHH
Q ss_conf 311766540468
Q gi|254780836|r 208 TLYDPTCGTGGF 219 (674)
Q Consensus 208 tIyDPaCGTGGm 219 (674)
.+|+|-|||-|.
T Consensus 7 ~~~~PVCGtDG~ 18 (45)
T cd01327 7 KDYDPVCGTDGV 18 (45)
T ss_pred CCCCCCCCCCCC
T ss_conf 767762578998
No 244
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=22.79 E-value=49 Score=13.18 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.9
Q ss_pred HHHHHHHHHHCC
Q ss_conf 689999998849
Q gi|254780836|r 374 ESEIRRWLLEND 385 (674)
Q Consensus 374 Es~IRk~lie~d 385 (674)
|-.|=+||...+
T Consensus 190 ElDIW~YI~~E~ 201 (300)
T PRK05253 190 ELDIWQYIYREN 201 (300)
T ss_pred HHHHHHHHHHHC
T ss_conf 778999999848
No 245
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=22.71 E-value=49 Score=13.17 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=23.0
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHH
Q ss_conf 31176654046899999999985310053332255046666788999999
Q gi|254780836|r 208 TLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVA 257 (674)
Q Consensus 208 tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~ 257 (674)
+..|.|.|.||-=-. .+..+++ ...++|-+..+++...|+-
T Consensus 26 ~yvD~T~G~GGHS~~---iL~~l~~------~~~li~iDrD~~ai~~a~~ 66 (309)
T PRK00050 26 IYVDGTFGRGGHSRA---ILSQLGP------GGRLIAIDRDPQAIAAAKE 66 (309)
T ss_pred EEEEECCCCCHHHHH---HHHHCCC------CCEEEEEECCHHHHHHHHH
T ss_conf 999938898399999---9972799------9889999898899999999
No 246
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=22.61 E-value=33 Score=14.26 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
Q ss_conf 6540468999999999853100533322550466
Q gi|254780836|r 213 TCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQE 246 (674)
Q Consensus 213 aCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQE 246 (674)
+.|||||.|--.- .+.....+++.. -.-|+.
T Consensus 210 ~~GTGGM~sK~~A--A~~A~~~Gv~v~-i~~g~~ 240 (379)
T TIGR01027 210 KVGTGGMRSKIEA--ARLATRAGVPVI-IASGSK 240 (379)
T ss_pred CCCCCHHHHHHHH--HHHHHHCCCCEE-EECCCC
T ss_conf 7566467899999--999986899589-944889
No 247
>PRK13345 superantigen-like protein; Reviewed
Probab=22.41 E-value=50 Score=13.13 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=29.1
Q ss_pred HHHHHHHHCCCEE--------EEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHH
Q ss_conf 9999998849468--------88317677655788616999994688743488389972367
Q gi|254780836|r 376 EIRRWLLENDLIE--------AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATD 429 (674)
Q Consensus 376 ~IRk~lie~d~ie--------aII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~ 429 (674)
+||++|||+.-|- -+|.|-.+-|| -+=|+++-..+|-|.| ||.++
T Consensus 171 KLRK~LIe~~~LYk~~~k~GkI~I~MKdg~~y-------tfeL~kKLq~~RMgDv--Idg~~ 223 (232)
T PRK13345 171 KIRKMLVEKYRLYKGASDKGRIVINMKDEKKH-------EIDLSEKLSFDRMFDV--MDSKQ 223 (232)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEEECCCCEE-------EEEHHHHHHHHHHHCC--CCCCE
T ss_conf 99999998638544788775499997279779-------9982242214553151--04324
No 248
>PRK00215 LexA repressor; Validated
Probab=22.29 E-value=50 Score=13.12 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHH--HHHCHHHHHHHHHCCHHH
Q ss_conf 55899999999--752999899987177235
Q gi|254780836|r 94 TNTRNNLESYI--ASFSDNAKAIFEDFDFSS 122 (674)
Q Consensus 94 ~~~~~nl~~yi--~gfS~nv~dI~~~f~f~~ 122 (674)
..+-+.+.+|+ +|++|.+++|-+.|++.+
T Consensus 7 ~~il~fI~~~~~~~g~~Ps~rEI~~~~g~~S 37 (204)
T PRK00215 7 QEILDFIKDRIEETGYPPSRREIADALGLRS 37 (204)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC
T ss_conf 9999999999997488998999999809998
No 249
>PRK08198 threonine dehydratase; Provisional
Probab=22.00 E-value=51 Score=13.08 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
Q ss_conf 031176654046899999999985310053332255046666
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELE 248 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin 248 (674)
..|+=| ||.||+++-..-+++.++++. .++|.|-.
T Consensus 174 D~vvvp-vGGGGLiaGia~a~K~~~P~i------kViGVEpe 208 (406)
T PRK08198 174 DTVVVP-IGGGGLISGVATAVKALRPNV------RVIGVQAE 208 (406)
T ss_pred CEEEEC-CCCHHHHHHHHHHHHHHCCCC------CEEEEEEC
T ss_conf 878863-786268899999999868997------08999657
No 250
>PRK00770 deoxyhypusine synthase-like protein; Provisional
Probab=22.00 E-value=51 Score=13.08 Aligned_cols=37 Identities=14% Similarity=0.068 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1144389999999998622766575368179999999973
Q gi|254780836|r 152 DRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALL 191 (674)
Q Consensus 152 n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll 191 (674)
+..+-. +|.+|+++.+.. ....-|++++..++|-+.+
T Consensus 132 ee~~~~-~e~~i~~i~~~~--~~~~~~~~~ef~~~lgk~l 168 (386)
T PRK00770 132 YDVLLE-TDAFIREILKAE--PFQKRMGTAEFHYLLGKYV 168 (386)
T ss_pred HHHHHH-HHHHHHHHHHCC--HHCCCCCCHHHHHHHHHHH
T ss_conf 799999-999999998600--2068758099999999998
No 251
>KOG2360 consensus
Probab=21.99 E-value=51 Score=13.08 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=50.3
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 87764031176654046899999999985310053332255046666788999999989808875334566668234754
Q gi|254780836|r 202 SPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGST 281 (674)
Q Consensus 202 ~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdT 281 (674)
+|+.+-+|.|+||--|-=-+.....+.. ...+||-|..+.-++--+.-+-+.|.... -...||-
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n---------~gki~afe~d~~r~~tl~~~l~~ag~~~~-------~~~~~df 273 (413)
T KOG2360 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRN---------QGKIYAFERDAKRAATLRKLLKIAGVSIV-------ESVEGDF 273 (413)
T ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHC---------CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
T ss_conf 8999882355414665321129988622---------48721323416889999999987178745-------3201444
Q ss_pred CCCCCCCC-CEEEEEEECCCCCCC
Q ss_conf 57999866-418999816856765
Q gi|254780836|r 282 LSKDLFTG-KRFHYCLSNPPFGKK 304 (674)
Q Consensus 282 L~~d~~~~-~kFD~vlaNPPFg~~ 304 (674)
+....+.. +...|+|..|+-+.+
T Consensus 274 ~~t~~~~~~~~v~~iL~DpscSgS 297 (413)
T KOG2360 274 LNTATPEKFRDVTYILVDPSCSGS 297 (413)
T ss_pred CCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 477781002650599857987877
No 252
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=21.78 E-value=35 Score=14.10 Aligned_cols=22 Identities=36% Similarity=0.161 Sum_probs=15.1
Q ss_pred CEEEECCCCCHHHHHHHHHHHH
Q ss_conf 2255046666788999999989
Q gi|254780836|r 239 ILVPHGQELEPETHAVCVAGML 260 (674)
Q Consensus 239 ~~~lyGQEin~~tyaIak~nMl 260 (674)
.+.||-||--++|-||--|--|
T Consensus 194 QLKLYSQ~~Ad~TAaLYgATvL 215 (499)
T TIGR02733 194 QLKLYSQEDADETAALYGATVL 215 (499)
T ss_pred HHHHHCCCCHHHHHHHHHHHHH
T ss_conf 4223322203678999999999
No 253
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=21.63 E-value=52 Score=13.03 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=6.8
Q ss_pred HHHHHHHHHCHHH
Q ss_conf 9999997529998
Q gi|254780836|r 99 NLESYIASFSDNA 111 (674)
Q Consensus 99 nl~~yi~gfS~nv 111 (674)
-+-..|-|+|..+
T Consensus 80 lllgligg~Sa~~ 92 (508)
T COG4262 80 LLLGLIGGVSAAA 92 (508)
T ss_pred HHHHHHCCCHHHH
T ss_conf 9998850316999
No 254
>pfam04422 FrhB_FdhB_N Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term. Coenzyme F420 hydrogenase (EC:1.12.99.1) reduces the low-potential two-electron acceptor coenzyme F420. This family contains the N termini of F420 hydrogenase and dehydrogenase beta subunits. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (EC:1.2.1.2) is also a member of this family. This region is often found in association with the 4Fe-4S binding domain, fer4 (pfam00037).
Probab=21.48 E-value=52 Score=13.01 Aligned_cols=21 Identities=19% Similarity=0.558 Sum_probs=17.8
Q ss_pred HHHHHHHHHHCCCEEEEEECC
Q ss_conf 689999998849468883176
Q gi|254780836|r 374 ESEIRRWLLENDLIEAIVALP 394 (674)
Q Consensus 374 Es~IRk~lie~d~ieaII~LP 394 (674)
=+.+=.++||++.|++||..-
T Consensus 23 vTall~~lLe~g~vD~vv~v~ 43 (82)
T pfam04422 23 VTALLKYLLESGLVDGVLVVG 43 (82)
T ss_pred HHHHHHHHHHCCCCCEEEEEE
T ss_conf 999999999859966899983
No 255
>PRK12443 uridylate kinase; Reviewed
Probab=21.28 E-value=52 Score=12.98 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=6.4
Q ss_pred CCCCCHHHHHHH
Q ss_conf 753681799999
Q gi|254780836|r 175 EDFMTPRDVVHL 186 (674)
Q Consensus 175 GeffTPR~Vi~L 186 (674)
.|-|.++..++.
T Consensus 110 ~e~y~~~rA~~~ 121 (247)
T PRK12443 110 AEPYIRLRAVHH 121 (247)
T ss_pred CCCCCHHHHHHH
T ss_conf 677778999999
No 256
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=20.99 E-value=53 Score=12.95 Aligned_cols=67 Identities=24% Similarity=0.156 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHH
Q ss_conf 81799999999731784011013877640311766540468999999999853100533322550466667889999999
Q gi|254780836|r 179 TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAG 258 (674)
Q Consensus 179 TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~n 258 (674)
+|..|++|-..|--. .+....--|||-.|||||=-....+ +.+...+ ..+.|||-+.. .||-+-
T Consensus 48 p~TNVv~Ly~sl~r~--------d~~~qv~yYd~GVGt~Gfdavvdvr-rrl~~~~----~gsmFg~gL~~---nI~~AY 111 (423)
T COG3673 48 PPTNVVLLYASLQRA--------DGVTQVIYYDEGVGTGGFDAVVDVR-RRLEKLS----GGSMFGQGLVQ---NIREAY 111 (423)
T ss_pred CCCHHHHHHHHHHCC--------CCCEEEEEECCCCCCCCCHHHHHHH-HHHHHHH----HHHHHHHHHHH---HHHHHH
T ss_conf 960299999987547--------9824899866886655511467888-7656654----47788888898---799999
Q ss_pred HHH
Q ss_conf 898
Q gi|254780836|r 259 MLI 261 (674)
Q Consensus 259 Mli 261 (674)
.+|
T Consensus 112 rFL 114 (423)
T COG3673 112 RFL 114 (423)
T ss_pred HHH
T ss_conf 999
No 257
>TIGR01066 rplM_bact ribosomal protein L13; InterPro: IPR005823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L13 is one of the proteins from the large ribosomal subunit . In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit. This entry represents ribosomal protein L13 from bacteria, mitochondria and chloroplasts.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome.
Probab=20.91 E-value=53 Score=12.94 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHCCC----CCHH-HCCCEEE
Q ss_conf 999874068----8834-3087230
Q gi|254780836|r 17 KNAEDLWGD----FKHT-DFGKVIL 36 (674)
Q Consensus 17 ~~Ad~LRg~----~~~~-eY~~~IL 36 (674)
.+|.+|||. |-|+ |-||||.
T Consensus 32 ~vA~~LRGKHKp~YTP~~D~GD~VI 56 (145)
T TIGR01066 32 EVAKLLRGKHKPTYTPHVDCGDYVI 56 (145)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 8999843788884347861487269
No 258
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=20.12 E-value=55 Score=12.83 Aligned_cols=143 Identities=16% Similarity=0.145 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCC--CCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999998622766575368179999999973178401101387764031176--6540468999999999853100
Q gi|254780836|r 157 NIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDP--TCGTGGFLTDAMNHVADCGSHH 234 (674)
Q Consensus 157 ~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDP--aCGTGGmL~~a~~~i~~~~~~~ 234 (674)
...-..+++|+...|-..= +++..+++.-|+..- +|+. |..- +-|=+++.. ...+..
T Consensus 25 ~~~~~~~~e~a~~~~~pi~----~~e~g~~L~~L~~~~-------~~k~---iLEiGT~~GySal~m-----A~~l~~-- 83 (219)
T COG4122 25 PALLAELEEFARENGVPII----DPETGALLRLLARLS-------GPKR---ILEIGTAIGYSALWM-----ALALPD-- 83 (219)
T ss_pred CHHHHHHHHHHHHCCCCCC----CHHHHHHHHHHHHHC-------CCCE---EEEEECCCCHHHHHH-----HHHCCC--
T ss_conf 2689999987676289987----814899999999734-------9864---999635237999999-----963888--
Q ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCC---CCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf 53332255046666788999999989808875334566668234-7545---7999866418999816856765310001
Q gi|254780836|r 235 KIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQ-GSTL---SKDLFTGKRFHYCLSNPPFGKKWEKDKD 310 (674)
Q Consensus 235 ~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~-GdTL---~~d~~~~~kFD~vlaNPPFg~~Wk~~~~ 310 (674)
...++..|+|++-..+|+.|+---|..... -... ||+| +. +....||+|...- ||..
T Consensus 84 ----~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i------~~~~~gdal~~l~~--~~~~~fDliFIDa-----dK~~-- 144 (219)
T COG4122 84 ----DGRLTTIERDEERAEIARENLAEAGVDDRI------ELLLGGDALDVLSR--LLDGSFDLVFIDA-----DKAD-- 144 (219)
T ss_pred ----CCEEEEEECCHHHHHHHHHHHHHCCCCCEE------EEEECCCHHHHHHH--CCCCCCCEEEEEC-----CHHH--
T ss_conf ----976999707989999999999975976528------98835747999973--3478856899837-----8435--
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 112344226666535777747706599999999961466578807999738971347764
Q gi|254780836|r 311 AVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRA 370 (674)
Q Consensus 311 ~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~a 370 (674)
+ --|+...+..|++ || .||.. .+||.|..
T Consensus 145 ----------y--------------p~~le~~~~lLr~----GG--liv~D-Nvl~~G~v 173 (219)
T COG4122 145 ----------Y--------------PEYLERALPLLRP----GG--LIVAD-NVLFGGRV 173 (219)
T ss_pred ----------C--------------HHHHHHHHHHHCC----CC--EEEEE-ECCCCCCC
T ss_conf ----------9--------------9999999997378----96--89983-03567866
Done!