HHsearch alignment for GI: 254780836 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=100.00 E-value=0 Score=616.51 Aligned_cols=285 Identities=34% Similarity=0.626 Sum_probs=248.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 61144389999999998622766575368179999999973178401101387764031176654046899999999985
Q gi|254780836|r 151 PDRVMSNIYEHLIRRFGSEVSEGAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADC 230 (674)
Q Consensus 151 ~n~~mG~iyE~LIrkFae~~~~~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~ 230 (674)
T Consensus 2 ~~D~~G~~yE~ll~~~a~~~g~~~GeffTPr~Vv~lmv~ll----------~p~~~~~V~DPacGtGgfLi~a~~~i~~~ 71 (312)
T pfam02384 2 SRDLFGDAYEYLLGKFANEEGKSGGEFYTPREVSKLIVELL----------EPKPGESIYDPACGSGGFLIQADKFVKSH 71 (312)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHH----------CCCCCCEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 72033399999999999873875863588789999999982----------89999988216877337899999999984
Q ss_pred HHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEECCCCCCCCCCCH
Q ss_conf 31005333225504666678899999998980887533456666823475457999866-41899981685676531000
Q gi|254780836|r 231 GSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTG-KRFHYCLSNPPFGKKWEKDK 309 (674)
Q Consensus 231 ~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~-~kFD~vlaNPPFg~~Wk~~~ 309 (674)
T Consensus 72 ~~~~---~~~~i~G~E~~~~~~~la~mNm~lhgi~~~-----~~~i~~gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~ 143 (312)
T pfam02384 72 DGDT---NDISIYGQELNPTTYRLARMNMILHGIEYN-----DFGIRHGDTLLSPKFEEDKKFDVVVANPPFNQKWDAND 143 (312)
T ss_pred CCCC---CCCEEECCCCCHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 3785---565563688998999999999998479887-----45521477655767665455118983786466766543
Q ss_pred HHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 111234422666653-5777747706599999999961466578807999738971347764432689999998849468
Q gi|254780836|r 310 DAVEKEHKNGELGRF-GPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674)
Q Consensus 310 ~~v~~e~~~~~~~Rf-~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674)
T Consensus 144 ~~~~-------~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~----~GraaiVlp~g~Lf~~~~---e~~iR~~lle~~~l~ 209 (312)
T pfam02384 144 NLEN-------DPRFRAYGVPPKSNADFAFLQHIIYHLSP----NGRAAVVLPNGVLFRGGA---EGDIRKALVEKDLIE 209 (312)
T ss_pred CCCC-------CCCHHCCCCCCCCCHHHHHHHHHHHHCCC----CCEEEEEECCCCCCCCCH---HHHHHHHHHHCCCEE
T ss_conf 2102-------72110368788874429999999985699----976999955823104650---889999999759769
Q ss_pred EEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCC--CCCEE
Q ss_conf 8831767765578861699999468874348838997236776576404664420698999999999972102--54104
Q gi|254780836|r 389 AIVALPTDLFFRTNIATYLWILSNRKTEERRGKVQLINATDLWTSIRNEGKKRRIINDDQRRQILDIYVSREN--GKFSR 466 (674)
Q Consensus 389 aII~LP~~lFynTgI~t~Iwil~k~K~~~rkgkV~lIDAs~~~~~~rk~G~Kr~~l~~~~i~~Iv~~y~~f~e--~e~sk 466 (674)
T Consensus 210 aVI~LP~~lF~~tgi~t~ilv~~k~k~--~~~~V~fida~~~~~~---~~~~~~~l~~~~i~~i~~~~~~~~~~~~~~s~ 284 (312)
T pfam02384 210 AVIALPPNLFYNTGIPTCILFLTKNKA--RKGDVLFIDASNEFEK---KGRKLNPLTDEHIEKIVDTYGEWPEDVAGFAK 284 (312)
T ss_pred EEEECCCCCCCCCCCCEEEEEEECCCC--CCCCEEEEECCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999589775338998479999988988--9896899988854554---67778829999999999999753105587389
Q ss_pred EEECCC
Q ss_conf 744466
Q gi|254780836|r 467 MLDYRT 472 (674)
Q Consensus 467 i~~~~~ 472 (674)
T Consensus 285 ~v~~~e 290 (312)
T pfam02384 285 VATLDE 290 (312)
T ss_pred EEEHHH
T ss_conf 963999