HHsearch alignment for GI: 254780836 and conserved domain: pfam07021
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=96.57 E-value=0.0034 Score=40.30 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=51.0
Q ss_pred HHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999731784011013877640311766540468999999999853100533322550466667889999999898088
Q gi|254780836|r 185 HLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRL 264 (674)
Q Consensus 185 ~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~ 264 (674)
T Consensus 5 ~iI~~~I----------~~~--srVLDlGCG~G~ll~----~L~~---~----k~v~~~GvEid~~~v~~a~~----kg~ 57 (193)
T pfam07021 5 RYIARLI----------PPG--SRVLDLGCGDGSLLY----LLQE---E----KQVDGRGIELDAAGVAECVA----KGL 57 (193)
T ss_pred HHHHHHC----------CCC--CEEEEECCCCCHHHH----HHHH---C----CCCCEEEECCCHHHHHHHHH----CCC
T ss_conf 9999865----------896--989983688989999----9987---6----69876983389999999986----479
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECC
Q ss_conf 7533456666823475457-9998664189998168
Q gi|254780836|r 265 ESDPRRDLSKNIQQGSTLS-KDLFTGKRFHYCLSNP 299 (674)
Q Consensus 265 ~~d~~~~~~~NI~~GdTL~-~d~~~~~kFD~vlaNP 299 (674)
T Consensus 58 ~----------Vi~~D~d~~l~~f~d~sFD~VIls~ 83 (193)
T pfam07021 58 S----------VIQGDADKGLEHFPDKSFDYVILSQ 83 (193)
T ss_pred C----------EECCCHHHCHHHCCCCCCCEEEHHH
T ss_conf 5----------4507744597457767803786987