HHsearch alignment for GI: 254780836 and conserved domain: pfam12161
>pfam12161 HsdM_N HsdM N-terminal domain. This domain is found at the N-terminus of the methylase subunit of Type I DNA methyltransferases. This domain family is found in bacteria and archaea, and is typically between 123 and 138 amino acids in length. The family is found in association with pfam02384. Mutations in this region of EcoKI methyltransferase abolish the normally strong preference of this system for methylating hemimethylated substrate. The structure of this domain has been shown to be all alpha-helical.
Probab=99.42 E-value=7.6e-14 Score=109.82 Aligned_cols=85 Identities=34% Similarity=0.589 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCCCHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHH
Q ss_conf 99999999987406888343087230548999896741233999999997202468896787653389610368036886
Q gi|254780836|r 11 LANFIWKNAEDLWGDFKHTDFGKVILPFTLLRRLECALEPTRSAVREKYLAFGGSNIDLESFVKVAGYSFYNTSEYSLST 90 (674)
Q Consensus 11 L~s~iW~~Ad~LRg~~~~~eY~~~ILp~~~Lrrld~~le~~k~~v~~~~~~~~~~~~~~~~~~~~~g~~F~n~s~~~~~~ 90 (674)
T Consensus 1 l~~~lw~~ad~LRg~~~~~~y~~~il~LlFlK~-----------------------------------------~~~w~~ 39 (92)
T pfam12161 1 LESKLWNIADILRGDVDASEYKEYILPLLFLKR-----------------------------------------EYRWSN 39 (92)
T ss_pred CHHHHHHHHHHHHCCCCHHHCCCCEEEEEEEEC-----------------------------------------CCCHHH
T ss_conf 917999999998087997880161210121024-----------------------------------------880899
Q ss_pred HH----HHHHHHHHHHHHHHHCHH---HHHHHHHCCHHHHHHHHHHCCHHHHHHHH
Q ss_conf 13----455899999999752999---89998717723577544423628999987
Q gi|254780836|r 91 LG----STNTRNNLESYIASFSDN---AKAIFEDFDFSSTIARLEKAGLLYKICKN 139 (674)
Q Consensus 91 l~----~~~~~~nl~~yi~gfS~n---v~dI~~~f~f~~~i~~L~~~~~L~~vI~~ 139 (674)
T Consensus 40 l~~~~~~~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~---~~~~~~~~L~~vi~~ 92 (92)
T pfam12161 40 LKANDDGDELGENLNDALPGLEELNPDLKGIFFDADFN---TKLEKPDLLKKVIEK 92 (92)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCHHHHCCCCCCCCC---CCCCCHHHHHHHHCC
T ss_conf 98501589689999999999998787674412556587---755782689988509