HHsearch results for GI: 254780836 and protein with PDBid: 1fbn_A
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A
Probab=95.36 E-value=0.092 Score=29.54 Aligned_cols=137 Identities=10% Similarity=0.045 Sum_probs=69.7
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC--CCCCC
Q ss_conf 7640311766540468999999999853100533322550466667889999999898088753345666682--34754
Q gi|254780836|r 204 GMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNI--QQGST 281 (674)
Q Consensus 204 ~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI--~~GdT 281 (674)
.++.+|+|-.||||.+.+...+.+ + ...+||.|++|+..+.++...- .. .|+ ..+|.
T Consensus 73 kpg~~VLDlGcGtG~~~~~la~~~----~------~G~V~aVDiSp~mi~~a~~~a~--~~---------~ni~~i~~d~ 131 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIA----D------KGIVYAIEYAPRIMRELLDACA--ER---------ENIIPILGDA 131 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHT----T------TSEEEEEESCHHHHHHHHHHTT--TC---------TTEEEEECCT
T ss_pred CCCCEEEEECCCCCHHHHHHHHHC----C------CCEEEEEECCHHHHHHHHHHHH--HC---------CCCEEEEEEC
T ss_conf 999999996797798999999758----9------9659999799899999998776--44---------8731798413
Q ss_pred CCCC--CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 5799--98664189998168567653100011123442266665357777477065999999999614665788079997
Q gi|254780836|r 282 LSKD--LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIV 359 (674)
Q Consensus 282 L~~d--~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV 359 (674)
...+ ......+|++..+-.+- .+ --.++.++-.-||+ ||+..++
T Consensus 132 ~~~~~~~~~~~~vd~i~~~~~~~-----------------------------~~-~~~~l~~~~~~LKp----gG~l~i~ 177 (230)
T 1fbn_A 132 NKPQEYANIVEKVDVIYEDVAQP-----------------------------NQ-AEILIKNAKWFLKK----GGYGMIA 177 (230)
T ss_dssp TCGGGGTTTSCCEEEEEECCCST-----------------------------TH-HHHHHHHHHHHEEE----EEEEEEE
T ss_pred CCCCCCCCCCCEEEEEEEECCCH-----------------------------HH-HHHHHHHHHHHCCC----CCEEEEE
T ss_conf 58642356663599997101242-----------------------------78-99999998864589----9689999
Q ss_pred CCCCCC-CCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf 389713-477644326899999988494-688831767
Q gi|254780836|r 360 LSSSPL-FNGRAGSGESEIRRWLLENDL-IEAIVALPT 395 (674)
Q Consensus 360 ~ngs~L-F~G~agsGEs~IRk~lie~d~-ieaII~LP~ 395 (674)
....+. -++....--.+.++.|-+.++ +.-++.|.+
T Consensus 178 ~k~~s~d~~~~~~~~~~~~~~~L~~aGF~ive~i~L~p 215 (230)
T 1fbn_A 178 IKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEP 215 (230)
T ss_dssp EEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEEEECTT
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 97145578778789999999999987994899975798