HHsearch results for GI: 254780836 and protein with PDBid: 1ne2_A
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Probab=99.17 E-value=8.5e-10 Score=82.00 Aligned_cols=163 Identities=13% Similarity=0.159 Sum_probs=93.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHH
Q ss_conf 57536817999999997317840110138776403117665404689999999998531005333225504666678899
Q gi|254780836|r 174 AEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHA 253 (674)
Q Consensus 174 aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tya 253 (674)
..||-||-+|..-|+..+... .+-. +.+|.|++||||.+-+.+.. .+ ...++|.|+++.+..
T Consensus 27 leQY~t~~~iaa~~~~~~~~~-----gd~~--Gk~VLDlGcGtG~l~i~a~~----~g-------a~~V~~vDid~~a~~ 88 (200)
T 1ne2_A 27 LEQYPTDASTAAYFLIEIYND-----GNIG--GRSVIDAGTGNGILACGSYL----LG-------AESVTAFDIDPDAIE 88 (200)
T ss_dssp ---CCCCHHHHHHHHHHHHHH-----TSSB--TSEEEEETCTTCHHHHHHHH----TT-------BSEEEEEESCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCCC--CCEEEECCCCHHHHHHHHHH----CC-------CCEEEEEECCHHHHH
T ss_conf 100799889999999999866-----9989--39899875751099999996----79-------987967508999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 99999898088753345666682347545799986641899981685676531000111234422666653577774770
Q gi|254780836|r 254 VCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISD 333 (674)
Q Consensus 254 Iak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sd 333 (674)
+|+.|.- . -++..+|-.. ...+||.|++|||||...+ .
T Consensus 89 ~a~~N~~--~----------~~~~~~d~~~----~~~~fD~Vi~NPPfg~~~~--------------------------~ 126 (200)
T 1ne2_A 89 TAKRNCG--G----------VNFMVADVSE----ISGKYDTWIMNPPFGSVVK--------------------------H 126 (200)
T ss_dssp HHHHHCT--T----------SEEEECCGGG----CCCCEEEEEECCCC--------------------------------
T ss_pred HHHHHHH--H----------CCCEEEEHHH----CCCCCCEEEECCCCCHHHC--------------------------C
T ss_conf 9999898--5----------7853765210----5775488987798631101--------------------------6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE----EECCCCCCCC----CCCCE
Q ss_conf 659999999996146657880799973897134776443268999999884946888----3176776557----88616
Q gi|254780836|r 334 GSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAI----VALPTDLFFR----TNIAT 405 (674)
Q Consensus 334 g~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaI----I~LP~~lFyn----TgI~t 405 (674)
.+..||...... + .+|.. +. .+ +.+.-|++.+-+.+.+... ..||.-..+. --|..
T Consensus 127 ~D~~fl~~a~~~--------~--~~vys---~h--~~-~~~~~i~~~~~~~g~i~~~~~~~f~lp~~y~~H~~~~~~i~v 190 (200)
T 1ne2_A 127 SDRAFIDKAFET--------S--MWIYS---IG--NA-KARDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRARIEA 190 (200)
T ss_dssp -CHHHHHHHHHH--------E--EEEEE---EE--EG-GGHHHHHHHHHHHEEEEEEEEEEEECCSCCC------CEEEE
T ss_pred CCHHHHHHHHCC--------C--CEEEE---EE--HH-HHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHCEEEEEEE
T ss_conf 649999998605--------8--58997---20--13-269999998642753999985167784013033130217999
Q ss_pred EEEEEEC
Q ss_conf 9999946
Q gi|254780836|r 406 YLWILSN 412 (674)
Q Consensus 406 ~Iwil~k 412 (674)
.+|.+.+
T Consensus 191 ~~~ri~~ 197 (200)
T 1ne2_A 191 VIFGVRN 197 (200)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
T ss_conf 9999932