HHsearch results for GI: 254780836 and protein with PDBid: 1uwv_A

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.14  E-value=0.0016  Score=41.12  Aligned_cols=168  Identities=20%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             575368-1799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      ++.||- -+.....|++.+.    +.+  .+....+|+|-.||+|.|=....       ..     .-.++|.|+++.+.
T Consensus       260 p~sFfQ~N~~~~~~l~~~v~----~~l--~~~~~~~vlDLYcG~G~fsl~La-------~~-----~~~V~gvE~~~~Av  321 (433)
T 1uwv_A          260 PRDFIQVNAGVNQKMVARAL----EWL--DVQPEDRVLDLFCGMGNFTLPLA-------TQ-----AASVVGVEGVPALV  321 (433)
T ss_dssp             SSSCCCSBHHHHHHHHHHHH----HHH--TCCTTCEEEEESCTTTTTHHHHH-------TT-----SSEEEEEESCHHHH
T ss_pred             CCHHHHCCHHHHHHHHHHHH----HHH--CCCCCCEEEEECCCCCHHHHHHH-------HH-----CCEEEEEECCHHHH
T ss_conf             74131125888999999999----984--45688779995688517778766-------50-----56245663549999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP  329 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP  329 (674)
                      .-|+.|.-+.|++.-       ....||.   |........+||.|+.+||                      |-|  +.
T Consensus       322 ~~A~~na~~n~~~n~-------~f~~~~~~~~~~~~~~~~~~~d~vilDPP----------------------R~G--~~  370 (433)
T 1uwv_A          322 EKGQQNARLNGLQNV-------TFYHENLEEDVTKQPWAKNGFDKVLLDPA----------------------RAG--AA  370 (433)
T ss_dssp             HHHHHHHHHTTCCSE-------EEEECCTTSCCSSSGGGTTCCSEEEECCC----------------------TTC--CH
T ss_pred             HHHHHHHHHCCCCCE-------EEEECCHHHHHHHHHHHCCCCCEEEECCC----------------------CCC--HH
T ss_conf             999999998499756-------99914756664430665279998998999----------------------807--09


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf             4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r  330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL  407 (674)
Q Consensus       330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I  407 (674)
                             -+++.++ ++++     -|++-|- |-.+|-|        .++ .|++.+| |+.|.  |=+||-.|.==-+|
T Consensus       371 -------~~~~~l~-~~~p-----~~IvYVSCnP~TlaR--------Dl~-~L~~~gy~l~~i~--~~D~FP~T~HvE~v  426 (433)
T 1uwv_A          371 -------GVMQQII-KLEP-----IRIVYVSCNPATLAR--------DSE-ALLKAGYTIARLA--MLDMFPHTGHLESM  426 (433)
T ss_dssp             -------HHHHHHH-HHCC-----SEEEEEESCHHHHHH--------HHH-HHHHTTCEEEEEE--EECCSTTSSCCEEE
T ss_pred             -------HHHHHHH-HCCC-----CEEEEEECCHHHHHH--------HHH-HHHHCCCEEEEEE--EEECCCCCCEEEEE
T ss_conf             -------9999998-3697-----959999089899998--------999-9987896685999--95338998618999


Q ss_pred             EEEECCC
Q ss_conf             9994688
Q gi|254780836|r  408 WILSNRK  414 (674)
Q Consensus       408 wil~k~K  414 (674)
                      -+|++-|
T Consensus       427 ~~l~R~~  433 (433)
T 1uwv_A          427 VLFSRVK  433 (433)
T ss_dssp             EEEEC--
T ss_pred             EEEEECC
T ss_conf             9999769