HHsearch results for GI: 254780836 and protein with PDBid: 1uwv_A
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=97.14 E-value=0.0016 Score=41.12 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=98.5
Q ss_pred CCCCCC-HHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 575368-1799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 174 AEDFMT-PRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 174 aGeffT-PR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
++.||- -+.....|++.+. +.+ .+....+|+|-.||+|.|=.... .. .-.++|.|+++.+.
T Consensus 260 p~sFfQ~N~~~~~~l~~~v~----~~l--~~~~~~~vlDLYcG~G~fsl~La-------~~-----~~~V~gvE~~~~Av 321 (433)
T 1uwv_A 260 PRDFIQVNAGVNQKMVARAL----EWL--DVQPEDRVLDLFCGMGNFTLPLA-------TQ-----AASVVGVEGVPALV 321 (433)
T ss_dssp SSSCCCSBHHHHHHHHHHHH----HHH--TCCTTCEEEEESCTTTTTHHHHH-------TT-----SSEEEEEESCHHHH
T ss_pred CCHHHHCCHHHHHHHHHHHH----HHH--CCCCCCEEEEECCCCCHHHHHHH-------HH-----CCEEEEEECCHHHH
T ss_conf 74131125888999999999----984--45688779995688517778766-------50-----56245663549999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754---579998664189998168567653100011123442266665357777
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGST---LSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdT---L~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
.-|+.|.-+.|++.- ....||. |........+||.|+.+|| |-| +.
T Consensus 322 ~~A~~na~~n~~~n~-------~f~~~~~~~~~~~~~~~~~~~d~vilDPP----------------------R~G--~~ 370 (433)
T 1uwv_A 322 EKGQQNARLNGLQNV-------TFYHENLEEDVTKQPWAKNGFDKVLLDPA----------------------RAG--AA 370 (433)
T ss_dssp HHHHHHHHHTTCCSE-------EEEECCTTSCCSSSGGGTTCCSEEEECCC----------------------TTC--CH
T ss_pred HHHHHHHHHCCCCCE-------EEEECCHHHHHHHHHHHCCCCCEEEECCC----------------------CCC--HH
T ss_conf 999999998499756-------99914756664430665279998998999----------------------807--09
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCEEE
Q ss_conf 4770659999999996146657880799973-89713477644326899999988494-688831767765578861699
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPTDLFFRTNIATYL 407 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~~lFynTgI~t~I 407 (674)
-+++.++ ++++ -|++-|- |-.+|-| .++ .|++.+| |+.|. |=+||-.|.==-+|
T Consensus 371 -------~~~~~l~-~~~p-----~~IvYVSCnP~TlaR--------Dl~-~L~~~gy~l~~i~--~~D~FP~T~HvE~v 426 (433)
T 1uwv_A 371 -------GVMQQII-KLEP-----IRIVYVSCNPATLAR--------DSE-ALLKAGYTIARLA--MLDMFPHTGHLESM 426 (433)
T ss_dssp -------HHHHHHH-HHCC-----SEEEEEESCHHHHHH--------HHH-HHHHTTCEEEEEE--EECCSTTSSCCEEE
T ss_pred -------HHHHHHH-HCCC-----CEEEEEECCHHHHHH--------HHH-HHHHCCCEEEEEE--EEECCCCCCEEEEE
T ss_conf -------9999998-3697-----959999089899998--------999-9987896685999--95338998618999
Q ss_pred EEEECCC
Q ss_conf 9994688
Q gi|254780836|r 408 WILSNRK 414 (674)
Q Consensus 408 wil~k~K 414 (674)
-+|++-|
T Consensus 427 ~~l~R~~ 433 (433)
T 1uwv_A 427 VLFSRVK 433 (433)
T ss_dssp EEEEC--
T ss_pred EEEEECC
T ss_conf 9999769