HHsearch results for GI: 254780836 and protein with PDBid: 2pwy_A
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Probab=97.80 E-value=0.00028 Score=46.02 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=90.8
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf 65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r 173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH 252 (674)
Q Consensus 173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty 252 (674)
-..|---|.++..++..+= + .|| .+|+|.-||||++-....+.+.. ...++|.|++++..
T Consensus 75 r~~qiiyp~d~~~Ii~~l~-------i--~pG--~~VLEiG~GsG~lt~~lA~~v~~---------~g~V~~~d~~~~~~ 134 (258)
T 2pwy_A 75 RSATPTYPKDASAMVTLLD-------L--APG--MRVLEAGTGSGGLTLFLARAVGE---------KGLVESYEARPHHL 134 (258)
T ss_dssp CSSCCCCHHHHHHHHHHTT-------C--CTT--CEEEEECCTTSHHHHHHHHHHCT---------TSEEEEEESCHHHH
T ss_pred CCCCCCCHHHHHHHHHHCC-------C--CCC--CEEEECCCCHHHHHHHHHHHCCC---------CCEEEEEECCHHHH
T ss_conf 9876747799999999719-------8--999--99998777067999999997288---------73899984899999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r 253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS 332 (674)
Q Consensus 253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s 332 (674)
.+|+.|+--.+...+ -.+..|| +.+..+....||.|+...|= .|
T Consensus 135 ~~A~~n~~~~~~~~~------v~~~~~d-~~~~~~~~~~~d~v~ld~p~--p~--------------------------- 178 (258)
T 2pwy_A 135 AQAERNVRAFWQVEN------VRFHLGK-LEEAELEEAAYDGVALDLME--PW--------------------------- 178 (258)
T ss_dssp HHHHHHHHHHCCCCC------EEEEESC-GGGCCCCTTCEEEEEEESSC--GG---------------------------
T ss_pred HHHHHHHHHCCCCCC------EEEEECC-HHHCCCCCCCCCEEEECCCC--HH---------------------------
T ss_conf 999999998089985------5688365-78855556432389964889--99---------------------------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 06599999999961466578807999738971347764432689999998849468
Q gi|254780836|r 333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE 388 (674)
Q Consensus 333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie 388 (674)
.++.|+...||| ||++++..|.- + + -.++.+.+-+.++.+
T Consensus 179 ----~~l~~~~~~LKp----GG~lv~~~p~~---~----Q-~~~~~~~l~~~gf~~ 218 (258)
T 2pwy_A 179 ----KVLEKAALALKP----DRFLVAYLPNI---T----Q-VLELVRAAEAHPFRL 218 (258)
T ss_dssp ----GGHHHHHHHEEE----EEEEEEEESCH---H----H-HHHHHHHHTTTTEEE
T ss_pred ----HHHHHHHHHCCC----CCEEEEEECCH---H----H-HHHHHHHHHHCCCEE
T ss_conf ----999999986678----95999993988---9----9-999999999889837