HHsearch results for GI: 254780836 and protein with PDBid: 2pwy_A

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Probab=97.80  E-value=0.00028  Score=46.02  Aligned_cols=144  Identities=15%  Similarity=0.119  Sum_probs=90.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             65753681799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  173 GAEDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       173 ~aGeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      -..|---|.++..++..+=       +  .||  .+|+|.-||||++-....+.+..         ...++|.|++++..
T Consensus        75 r~~qiiyp~d~~~Ii~~l~-------i--~pG--~~VLEiG~GsG~lt~~lA~~v~~---------~g~V~~~d~~~~~~  134 (258)
T 2pwy_A           75 RSATPTYPKDASAMVTLLD-------L--APG--MRVLEAGTGSGGLTLFLARAVGE---------KGLVESYEARPHHL  134 (258)
T ss_dssp             CSSCCCCHHHHHHHHHHTT-------C--CTT--CEEEEECCTTSHHHHHHHHHHCT---------TSEEEEEESCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHCC-------C--CCC--CEEEECCCCHHHHHHHHHHHCCC---------CCEEEEEECCHHHH
T ss_conf             9876747799999999719-------8--999--99998777067999999997288---------73899984899999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             99999989808875334566668234754579998664189998168567653100011123442266665357777477
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKIS  332 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~s  332 (674)
                      .+|+.|+--.+...+      -.+..|| +.+..+....||.|+...|=  .|                           
T Consensus       135 ~~A~~n~~~~~~~~~------v~~~~~d-~~~~~~~~~~~d~v~ld~p~--p~---------------------------  178 (258)
T 2pwy_A          135 AQAERNVRAFWQVEN------VRFHLGK-LEEAELEEAAYDGVALDLME--PW---------------------------  178 (258)
T ss_dssp             HHHHHHHHHHCCCCC------EEEEESC-GGGCCCCTTCEEEEEEESSC--GG---------------------------
T ss_pred             HHHHHHHHHCCCCCC------EEEEECC-HHHCCCCCCCCCEEEECCCC--HH---------------------------
T ss_conf             999999998089985------5688365-78855556432389964889--99---------------------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEE
Q ss_conf             06599999999961466578807999738971347764432689999998849468
Q gi|254780836|r  333 DGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIE  388 (674)
Q Consensus       333 dg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ie  388 (674)
                          .++.|+...|||    ||++++..|.-   +    + -.++.+.+-+.++.+
T Consensus       179 ----~~l~~~~~~LKp----GG~lv~~~p~~---~----Q-~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          179 ----KVLEKAALALKP----DRFLVAYLPNI---T----Q-VLELVRAAEAHPFRL  218 (258)
T ss_dssp             ----GGHHHHHHHEEE----EEEEEEEESCH---H----H-HHHHHHHHTTTTEEE
T ss_pred             ----HHHHHHHHHCCC----CCEEEEEECCH---H----H-HHHHHHHHHHCCCEE
T ss_conf             ----999999986678----95999993988---9----9-999999999889837