HHsearch results for GI: 254780836 and protein with PDBid: 2vdw_A

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}
Probab=94.42  E-value=0.038  Score=32.05  Aligned_cols=117  Identities=13%  Similarity=0.129  Sum_probs=60.6

Q ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHH--HHCCCCCC-CCCCCCCCCCCCCC
Q ss_conf             4031176654046899999999985310053332255046666788999999989--80887533-45666682347545
Q gi|254780836|r  206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGML--IRRLESDP-RRDLSKNIQQGSTL  282 (674)
Q Consensus       206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMl--i~g~~~d~-~~~~~~NI~~GdTL  282 (674)
                      ..+|+|-|||.||-|.   ++++     .+   ...+.|.++++++...|+.-.-  -.+..... ..+.......+|.+
T Consensus        49 ~~~VLDlgcG~GgDl~---K~~~-----~~---~~~vvGiDiS~~~I~~A~~R~~~~~~~~~~~~~~~~~~~~~~~~d~~  117 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLE---KYFY-----GE---IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTF  117 (302)
T ss_dssp             CCEEEETTCTTTTTHH---HHHH-----TT---CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSH
T ss_pred             CCEEEEEEEEECHHHH---HHHH-----CC---CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHCCCCHHHHHHCCHH
T ss_conf             9979999500045279---9996-----69---98899997989999999999997212433100013305999861132


Q ss_pred             CC---CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEE-
Q ss_conf             79---99866418999816856765310001112344226666535777747706599999999961466578807999-
Q gi|254780836|r  283 SK---DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAI-  358 (674)
Q Consensus       283 ~~---d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aI-  358 (674)
                      ..   ..+++.+||+|.+.--+-  +--+                    | ..  ...|++++-..|+|    ||+..+ 
T Consensus       118 ~~~~~~~~~~~~FDvVs~qfalH--y~f~--------------------~-~~--~~~~l~ni~~~Lkp----gG~fi~t  168 (302)
T 2vdw_A          118 VSSVREVFYFGKFNIIDWQFAIH--YSFH--------------------P-RH--YATVMNNLSELTAS----GGKVLIT  168 (302)
T ss_dssp             HHHHHTTCCSSCEEEEEEESCGG--GTCS--------------------T-TT--HHHHHHHHHHHEEE----EEEEEEE
T ss_pred             HHHHHHHCCCCCEEEEEECCHHH--HHCC--------------------C-HH--HHHHHHHHHHHCCC----CCEEEEE
T ss_conf             44455304789756999814065--6088--------------------5-89--99999999961389----9689999


Q ss_pred             ECCC
Q ss_conf             7389
Q gi|254780836|r  359 VLSS  362 (674)
Q Consensus       359 V~ng  362 (674)
                      +++|
T Consensus       169 ~~~~  172 (302)
T 2vdw_A          169 TMDG  172 (302)
T ss_dssp             EECH
T ss_pred             ECCH
T ss_conf             8069