HHsearch results for GI: 254780836 and protein with PDBid: 3ajd_A
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=96.76 E-value=0.026 Score=33.11 Aligned_cols=177 Identities=14% Similarity=0.136 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHH
Q ss_conf 75368179999999973178401101387764031176654046899999999985310053332255046666788999
Q gi|254780836|r 175 EDFMTPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAV 254 (674)
Q Consensus 175 GeffTPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaI 254 (674)
|.+ +..+....++-.++ .|.+...|.|.|||.||-.+.....+. . ...++..|++..-...
T Consensus 63 G~~-~iQD~sS~l~~~~l---------~~~~g~~vLD~CaapGgKt~~i~~~~~----~-----~~~i~a~d~~~~rl~~ 123 (274)
T 3ajd_A 63 GYY-MPQSISSMIPPIVL---------NPREDDFILDMCAAPGGKTTHLAQLMK----N-----KGTIVAVEISKTRTKA 123 (274)
T ss_dssp TSE-EECCSGGGHHHHHH---------CCCTTCEEEETTCTTCHHHHHHHHHTT----T-----CSEEEEEESCHHHHHH
T ss_pred CEE-EEECHHHHCHHHHC---------CCCCCCEEEEECCCCCHHHHHHHHHHH----C-----CCCEEEECCCHHHHHH
T ss_conf 809-99455651589758---------999999799907888688999999853----8-----6833873277889999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCEEEEEEECCCCCCC--CCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999898088753345666682347545799---9866418999816856765--3100011123442266665357777
Q gi|254780836|r 255 CVAGMLIRRLESDPRRDLSKNIQQGSTLSKD---LFTGKRFHYCLSNPPFGKK--WEKDKDAVEKEHKNGELGRFGPGLP 329 (674)
Q Consensus 255 ak~nMli~g~~~d~~~~~~~NI~~GdTL~~d---~~~~~kFD~vlaNPPFg~~--Wk~~~~~v~~e~~~~~~~Rf~~glP 329 (674)
.+.|+--.|.... .+..+|...-+ .....+||.||..||=+-. |....+ +..+ .+.
T Consensus 124 l~~~~~r~g~~~~-------~~~~~d~~~~~~~~~~~~~~fD~ILlDaPCSg~G~~~~~~~-~~~~-----------~~~ 184 (274)
T 3ajd_A 124 LKSNINRMGVLNT-------IIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRN-VSEE-----------DIK 184 (274)
T ss_dssp HHHHHHHTTCCSE-------EEEESCHHHHHHHHHHTTCCEEEEEEEECCC-------------HH-----------HHT
T ss_pred HHHHHHHHHCCCC-------CEECCCHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHH-HHHH-----------HHH
T ss_conf 9887876511441-------00224376766653145445767996388766633131012-1123-----------678
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 4770659999999996146657880799973897134776443268999999884946888317677655
Q gi|254780836|r 330 KISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPLFNGRAGSGESEIRRWLLENDLIEAIVALPTDLFF 399 (674)
Q Consensus 330 ~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~LF~G~agsGEs~IRk~lie~d~ieaII~LP~~lFy 399 (674)
.-+.-|.-.|.|.+.-+++ ||++. -.--+++.- -.|..|++.|=++.-.+ ++.++...+.
T Consensus 185 ~l~~~Q~~lL~~a~~~lk~----gG~lv--YsTCSl~~e---ENE~vV~~~L~~~~~~~-l~~~~~~~~~ 244 (274)
T 3ajd_A 185 YCSLRQKELIDIGIDLLKK----DGELV--YSTCSMEVE---ENEEVIKYILQKRNDVE-LIIIKANEFK 244 (274)
T ss_dssp GGGTCHHHHHHHHHHHEEE----EEEEE--EEESCCCTT---SSHHHHHHHHHHCSSEE-EECCCSTTCT
T ss_pred HHHHHHHHHHHHHHHHCCC----CCEEE--EEEECCCHH---HHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf 8999999999999974088----83899--973058778---86999999998689839-9706720035