HHsearch results for GI: 254780836 and protein with PDBid: 3bt7_A

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=97.53  E-value=0.00092  Score=42.60  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             CCCCCCH-HHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH
Q ss_conf             5753681-799999999731784011013877640311766540468999999999853100533322550466667889
Q gi|254780836|r  174 AEDFMTP-RDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETH  252 (674)
Q Consensus       174 aGeffTP-R~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~ty  252 (674)
                      .+-||=+ +.+...|++.+.    +.+...+   ..|.|-+||+|.|=..       +.+..     ..++|.|+|+.+.
T Consensus       188 p~sFfQ~N~~~~~~l~~~v~----~~~~~~~---~~vlDLycG~Gt~sl~-------La~~~-----~~V~gvE~~~~av  248 (369)
T 3bt7_A          188 ENSFTQPNAAMNIQMLEWAL----DVTKGSK---GDLLELYCGNGNFSLA-------LARNF-----DRVLATEIAKPSV  248 (369)
T ss_dssp             TTSCCCSBHHHHHHHHHHHH----HHTTTCC---SEEEEESCTTSHHHHH-------HGGGS-----SEEEEECCCHHHH
T ss_pred             CCCEECCCHHHHHHHHHHHH----HHHCCCC---CEEEECCCCCCHHHHH-------HHHCC-----CEEEEEEECHHHH
T ss_conf             99770559899999999999----8715677---6488737896588999-------87308-----5788999702678


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCC------CCC---------CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf             99999989808875334566668234754------579---------998664189998168567653100011123442
Q gi|254780836|r  253 AVCVAGMLIRRLESDPRRDLSKNIQQGST------LSK---------DLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHK  317 (674)
Q Consensus       253 aIak~nMli~g~~~d~~~~~~~NI~~GdT------L~~---------d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~  317 (674)
                      +-|+.|..+.|++.-.       ...||.      ++.         -.....++|.|+.+||=                
T Consensus       249 ~~A~~Na~~n~i~N~~-------f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR----------------  305 (369)
T 3bt7_A          249 AAAQYNIAANHIDNVQ-------IIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR----------------  305 (369)
T ss_dssp             HHHHHHHHHTTCCSEE-------EECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT----------------
T ss_pred             HHHHHHHHHCCCCCEE-------EEECCHHHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCC----------------
T ss_conf             9999999975988718-------99725999998876314566530231012658779989796----------------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHCCC-EEEEEECCC
Q ss_conf             2666653577774770659999999996146657880799973-89713477644326899999988494-688831767
Q gi|254780836|r  318 NGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSPLFNGRAGSGESEIRRWLLENDL-IEAIVALPT  395 (674)
Q Consensus       318 ~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~LF~G~agsGEs~IRk~lie~d~-ieaII~LP~  395 (674)
                            -|.  -    .   .+.-++++  .     -|+.-|- |-++|-        ..+. +| .++| |+.|.  |=
T Consensus       306 ------~Gl--~----~---~v~~~~~~--~-----~~ivYVSCnP~Tla--------rDl~-~L-~~gy~l~~~~--~~  351 (369)
T 3bt7_A          306 ------SGL--D----S---ETEKMVQA--Y-----PRILYISCNPETLC--------KNLE-TL-SQTHKVERLA--LF  351 (369)
T ss_dssp             ------TCC--C----H---HHHHHHTT--S-----SEEEEEESCHHHHH--------HHHH-HH-HHHEEEEEEE--EE
T ss_pred             ------CCC--H----H---HHHHHHHC--C-----CCEEEEECCHHHHH--------HHHH-HH-HCCCEEEEEE--EE
T ss_conf             ------251--8----9---99999856--9-----95999908989999--------9999-98-5485687999--97


Q ss_pred             CCCCCCCCCEEEEEEEC
Q ss_conf             76557886169999946
Q gi|254780836|r  396 DLFFRTNIATYLWILSN  412 (674)
Q Consensus       396 ~lFynTgI~t~Iwil~k  412 (674)
                      +||-.|.===+|-+|.+
T Consensus       352 D~FP~T~HvE~v~~l~r  368 (369)
T 3bt7_A          352 DQFPYTHHMQCGVLLTA  368 (369)
T ss_dssp             CCSTTSSCCEEEEEEEE
T ss_pred             ECCCCCCEEEEEEEEEC
T ss_conf             12899980888999963