HHsearch results for GI: 254780836 and protein with PDBid: 3fut_A
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus HB8} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=95.90 E-value=0.015 Score=34.76 Aligned_cols=182 Identities=14% Similarity=0.118 Sum_probs=97.7
Q ss_pred HHHHHHHHHCCCCCCCCC-CHHHHHHHHHHHHCCCCCHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999862276657536-8179999999973178401101387764031176654046899999999985310053332
Q gi|254780836|r 161 HLIRRFGSEVSEGAEDFM-TPRDVVHLATALLLDPDDALFKESPGMIRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPI 239 (674)
Q Consensus 161 ~LIrkFae~~~~~aGeff-TPR~Vi~Lmv~ll~~~~~~~~~~~p~~~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~ 239 (674)
.+++++.--..+.-|||| .-+.|++-+++.+-. .. .+|.+--+|+|.+ |.+ +.+..
T Consensus 12 ~~l~~~~~~~kK~lGQnFL~d~~i~~~iv~~~~~----------~~-~~VlEIGpG~G~L-T~~---L~~~~-------- 68 (271)
T 3fut_A 12 ALLERHGLFADKRFGQNFLVSEAHLRRIVEAARP----------FT-GPVFEVGPGLGAL-TRA---LLEAG-------- 68 (271)
T ss_dssp HHHHHTTCCCSTTSSCCEECCHHHHHHHHHHHCC----------CC-SCEEEECCTTSHH-HHH---HHHTT--------
T ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----------CC-CCEEEECCCCCHH-HHH---HHHCC--------
T ss_conf 9999769998877784503898999999996589----------99-9889967977199-999---99608--------
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 25504666678899999998980887533456666823475457999866418999816856765310001112344226
Q gi|254780836|r 240 LVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDLFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNG 319 (674)
Q Consensus 240 ~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~ 319 (674)
-.++..|+.+..+..-+... .+.. ..+..++-+..+.....+...|++|.||+++=
T Consensus 69 ~~v~avE~D~~l~~~L~~~~--~~~~--------~~~i~~~~~~~~~~~~~~~~~vv~NLPY~Ist-------------- 124 (271)
T 3fut_A 69 AEVTAIEKDLRLRPVLEETL--SGLP--------VRLVFQDALLYPWEEVPQGSLLVANLPYHIAT-------------- 124 (271)
T ss_dssp CCEEEEESCGGGHHHHHHHT--TTSS--------EEEEESCGGGSCGGGSCTTEEEEEEECSSCCH--------------
T ss_pred CCEEEEEECHHHHHHHHHHH--HHCC--------HHHHHHHHHHHHHHCCCCCEEEECCCCHHHHH--------------
T ss_conf 96799983706788887543--3301--------03334655531033077642672365213267--------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEC-CCCC--CCCCCCCCCH----HHHHHHHHHCCCEEEEEE
Q ss_conf 66653577774770659999999996146657880799973-8971--3477644326----899999988494688831
Q gi|254780836|r 320 ELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVL-SSSP--LFNGRAGSGE----SEIRRWLLENDLIEAIVA 392 (674)
Q Consensus 320 ~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~-ngs~--LF~G~agsGE----s~IRk~lie~d~ieaII~ 392 (674)
-++.+.++.... .+ +|+| .--+ =+.+..|+.. |-+-++ -.-++-+..
T Consensus 125 -----------------~ii~~ll~~~~~-----~~-~vlm~QkEvA~Ri~a~~~~k~y~~lSv~~q~---~~~~~~~~~ 178 (271)
T 3fut_A 125 -----------------PLVTRLLKTGRF-----AR-LVFLVQKEVAERMTARPKTPAYGVLTLRVAH---HAVAERLFD 178 (271)
T ss_dssp -----------------HHHHHHHHHCCE-----EE-EEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH---HEEEEEEEE
T ss_pred -----------------HHHHHHCCCCCC-----CC-CEEEEHHHHHHHHHCCCCCCCCCCCHHHHHH---HHHCCCCCC
T ss_conf -----------------999860345655-----44-1343108999998637997565824677666---340354654
Q ss_pred CCCCCCCC-CCCCEEEEEEECCCC
Q ss_conf 76776557-886169999946887
Q gi|254780836|r 393 LPTDLFFR-TNIATYLWILSNRKT 415 (674)
Q Consensus 393 LP~~lFyn-TgI~t~Iwil~k~K~ 415 (674)
.|.+-||- -.+-..|+-+..+++
T Consensus 179 V~~~~F~P~PkVdS~vv~l~~k~~ 202 (271)
T 3fut_A 179 LPPGAFFPPPKVWSSLVRLTPTGA 202 (271)
T ss_dssp ECGGGEESCCSSCEEEEEEEECSC
T ss_pred CCCCCCCCCCCEEEEEEEECCCCC
T ss_conf 588789999953688885325665