HHsearch results for GI: 254780836 and protein with PDBid: 3gnl_A
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=97.46 E-value=0.0015 Score=41.15 Aligned_cols=119 Identities=8% Similarity=0.046 Sum_probs=68.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03117665404689999999998531005333225504666678899999998980887533456666823475457999
Q gi|254780836|r 207 RTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKDL 286 (674)
Q Consensus 207 ~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d~ 286 (674)
.+|.|-+||+|-+-+.+. ..+ ....++|.|+++.....|+.|+-..|.... -.+..||.+....
T Consensus 23 ~~vlDiGcg~G~l~~~l~----~~~------~~~~V~avDi~~~~l~~A~~n~~~~gl~~~------I~~~~~D~~~~~~ 86 (244)
T 3gnl_A 23 ERIADIGSDHAYLPCFAV----KNQ------TASFAIAGEVVDGPFQSAQKQVRSSGLTEQ------IDVRKGNGLAVIE 86 (244)
T ss_dssp EEEEEETCSTTHHHHHHH----HTT------SEEEEEEEESSHHHHHHHHHHHHHTTCTTT------EEEEECSGGGGCC
T ss_pred CEEEEECCCHHHHHHHHH----HCC------CCCEEEEEECCHHHHHHHHHHHHHCCCCCC------EEEEECCCHHHHC
T ss_conf 989997186489999999----809------998899963889999999999998299986------7999887504321
Q ss_pred CCCCEEEE-EEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 86641899-98168567653100011123442266665357777477065999999999614665788079997389713
Q gi|254780836|r 287 FTGKRFHY-CLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSPL 365 (674)
Q Consensus 287 ~~~~kFD~-vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~L 365 (674)
....||. +++..+. -.+..++.........||+..+-.+
T Consensus 87 -~~~~~d~~viag~g~-----------------------------------~~i~~il~~~~~~l~~~g~liL~p~---- 126 (244)
T 3gnl_A 87 -KKDAIDTIVIAGMGG-----------------------------------TLIRTILEEGAAKLAGVTKLILQPN---- 126 (244)
T ss_dssp -GGGCCCEEEEEEECH-----------------------------------HHHHHHHHHTGGGGTTCCEEEEEES----
T ss_pred -CCCCCCEEEECCCCH-----------------------------------HHHHHHHHHHHHHHCCCCEEEEECC----
T ss_conf -557876899848888-----------------------------------9999999998997077987999638----
Q ss_pred CCCCCCCCHHHHHHHHHHCCCE
Q ss_conf 4776443268999999884946
Q gi|254780836|r 366 FNGRAGSGESEIRRWLLENDLI 387 (674)
Q Consensus 366 F~G~agsGEs~IRk~lie~d~i 387 (674)
++...+|+||.+++|.
T Consensus 127 ------~~~~~lR~~L~~~gf~ 142 (244)
T 3gnl_A 127 ------IAAWQLREWSEQNNWL 142 (244)
T ss_dssp ------SCHHHHHHHHHHHTEE
T ss_pred ------CCHHHHHHHHHHCCCE
T ss_conf ------7779999999988797