HHsearch results for GI: 254780836 and protein with PDBid: 3lpm_A
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=98.79 E-value=1.3e-08 Score=74.27 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=80.8
Q ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40311766540468999999999853100533322550466667889999999898088753345666682347545799
Q gi|254780836|r 206 IRTLYDPTCGTGGFLTDAMNHVADCGSHHKIPPILVPHGQELEPETHAVCVAGMLIRRLESDPRRDLSKNIQQGSTLSKD 285 (674)
Q Consensus 206 ~~tIyDPaCGTGGmL~~a~~~i~~~~~~~~~~~~~~lyGQEin~~tyaIak~nMli~g~~~d~~~~~~~NI~~GdTL~~d 285 (674)
...|.|.+||||.+...... .. ...++|.|+++.+.++|+-|+-..++... -.+..||...-+
T Consensus 50 ~~~vLDlG~G~G~~~l~la~---------~~--~~~v~~vDi~~~~~~~A~~N~~~n~l~~~------v~~~~~D~~~~~ 112 (259)
T 3lpm_A 50 KGKIIDLCSGNGIIPLLLST---------RT--KAKIVGVEIQERLADMAKRSVAYNQLEDQ------IEIIEYDLKKIT 112 (259)
T ss_dssp CCEEEETTCTTTHHHHHHHT---------TC--CCEEEEECCSHHHHHHHHHHHHHTTCTTT------EEEECSCGGGGG
T ss_pred CCEEEEEECCCCHHHHHHHH---------CC--CCEEEEEECCHHHHHHHHHHHHHCCCCHH------HEEEEHHHHHHH
T ss_conf 99799972585899999986---------78--98899999989999999999986073301------123300111000
Q ss_pred -CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf -9866418999816856765310001112344226666535777747706599999999961466578807999738971
Q gi|254780836|r 286 -LFTGKRFHYCLSNPPFGKKWEKDKDAVEKEHKNGELGRFGPGLPKISDGSMLFLMHLANKLELPPNGGGRAAIVLSSSP 364 (674)
Q Consensus 286 -~~~~~kFD~vlaNPPFg~~Wk~~~~~v~~e~~~~~~~Rf~~glP~~sdg~~lFlqh~i~klk~~~~~ggr~aIV~ngs~ 364 (674)
.++..+||+|++||||-..- ..............|+...+ +---|+......|++ ||++.++.+-.-
T Consensus 113 ~~~~~~~fD~Iv~NPPy~~~~---~~~~~~~~~~~~~ar~~~~~-----~l~~~i~~a~~lLk~----~G~~~~~~~~~r 180 (259)
T 3lpm_A 113 DLIPKERADIVTCNPPYFATP---DTSLKNTNEHFRIARHEVMC-----TLEDTIRVAASLLKQ----GGKANFVHRPER 180 (259)
T ss_dssp GTSCTTCEEEEEECCCC--------------------------H-----HHHHHHHHHHHHEEE----EEEEEEEECTTT
T ss_pred HCCCCCCCCEEEECCCCCCCC---CCCCCCCCHHHHHCCCCCCC-----CHHHHHHHHHHHCCC----CCEEEEEECHHH
T ss_conf 103554254788578853687---30226823555321335544-----899999999986289----968999988899
Q ss_pred CCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 3477644326899999988494
Q gi|254780836|r 365 LFNGRAGSGESEIRRWLLENDL 386 (674)
Q Consensus 365 LF~G~agsGEs~IRk~lie~d~ 386 (674)
-.++-..+-+.++
T Consensus 181 ---------l~ei~~~~~~~gl 193 (259)
T 3lpm_A 181 ---------LLDIIDIMRKYRL 193 (259)
T ss_dssp ---------HHHHHHHHHHTTE
T ss_pred ---------HHHHHHHHHHCCC
T ss_conf ---------9999999997799